BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005357
(700 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359477208|ref|XP_002279515.2| PREDICTED: flowering time control protein FCA [Vitis vinifera]
Length = 785
Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/730 (68%), Positives = 554/730 (75%), Gaps = 47/730 (6%)
Query: 2 GGGFRPMSGPRSGM--NYPLPQSLPVPQLSGQKRGFSGRGGP-SPDLVDGSSFAKLFVGS 58
G G RPM G G NY +P LSGQKRGF G SPD DG FAKLFVGS
Sbjct: 72 GAGLRPMGGGGGGFASNYQVP-------LSGQKRGFGFPGRGGSPDRYDGGGFAKLFVGS 124
Query: 59 VPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHT 118
VP+TA EEDIRPLFEEHGNV+EVALIKDK+TGQQQGCCFIKYATSEEA+RAIRALHNQ+T
Sbjct: 125 VPRTATEEDIRPLFEEHGNVLEVALIKDKRTGQQQGCCFIKYATSEEAERAIRALHNQYT 184
Query: 119 LPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE 178
LPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV+EIFSPYG+VEDVYLMRDE
Sbjct: 185 LPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVKEIFSPYGQVEDVYLMRDE 244
Query: 179 LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFG 238
LKQSRGCGFVK+SHRDMA+AAINALNGIYTMRGCDQPLTVRFADPKRPRPG+SR P FG
Sbjct: 245 LKQSRGCGFVKFSHRDMAMAAINALNGIYTMRGCDQPLTVRFADPKRPRPGESRGAPAFG 304
Query: 239 GPGFGPRFQPPSPRPPPNFGDPI-TDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRS 297
GPGFGPRFQ P RP N GDPI + +IP NAW PMSP+N+GP SN GI GFGNQ PRS
Sbjct: 305 GPGFGPRFQAPGVRPTMNQGDPIGSGRIPPNAWRPMSPQNLGPSSNAGIHGFGNQSLPRS 364
Query: 298 GDLGMP-------LNPGGPADVPLPGLAVSSTSSALQQNFCQPESQAPSLGQQISPLQKP 350
GD + GG AD L G+AVSS++++ QQ+F QP Q PS+G+QISPLQK
Sbjct: 365 GDGSISSTPGVPLGGLGGSADGSLSGIAVSSSATS-QQSFNQPMLQVPSIGEQISPLQKS 423
Query: 351 LQSPQHMPP-LQLHPQVPSSYSHTQNSH--LR---QLQI---PGQTSFSQALPSQHLLGM 401
LQSPQH+PP LQL Q P+SY+ Q H LR QLQI GQT F+Q LPSQ LLG+
Sbjct: 424 LQSPQHLPPSLQLQSQTPASYTQPQTPHSSLRQFGQLQISHSAGQTPFNQTLPSQQLLGL 483
Query: 402 SGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQQQLHQPYQQSPS 461
SG L SQPQ QQ ASS+TA TP+N+ Q ++ NQ Q+PAP QQQL QP QSPS
Sbjct: 484 SGQLSGSQPQVQQSASSATAQQTPVNLNLQQHAVSVMANQHQVPAPSQQQLVQPLHQSPS 543
Query: 462 QLAQMLSQQTQTLQATFQSSQQAFSQLQQQLQLMQPSNQNLPLQQGSQGTKQQSQWAGIA 521
QLAQ+LSQQTQ LQA+FQSSQQAFSQLQQQLQLMQPSNQ L QQGSQ TKQ QW G
Sbjct: 544 QLAQLLSQQTQALQASFQSSQQAFSQLQQQLQLMQPSNQTLTSQQGSQTTKQ--QWPGTV 601
Query: 522 PQTVASAPASAPAADLPVSTSIGPAAPVSSQTVAPAKSSWTEHTSPDGYKYYYNCVTGVS 581
PQTVAS PA D+P +TS A PV++Q VAP K +WTEHTSPDGYKYY+N VTG S
Sbjct: 602 PQTVASTATITPATDVPSTTS---AVPVTTQAVAPVKCNWTEHTSPDGYKYYHNSVTGES 658
Query: 582 KWEKPEELTLFEQQQQQQKPPVQQPPSQLHSQVLPAQHIPQTQQVQLQTQLRQQQQQQLQ 641
+WEKPEELTL EQQQQQQK VQQ +Q H+QVL Q IPQ QQVQLQTQL+ Q QLQ
Sbjct: 659 RWEKPEELTLLEQQQQQQKSSVQQSQAQSHTQVLSTQQIPQAQQVQLQTQLQAHLQAQLQ 718
Query: 642 H-----------PFSSSYQAPVVRGQHNAQELGYTQLPPVAAGSVNNPTRFQQGLQAAQD 690
P SSS A V GQ N QELGY Q V A SVN+P RFQQGLQAAQ+
Sbjct: 719 SQLRQHQQMQQPPVSSS--ASGVMGQQNVQELGYAQA-QVGASSVNDPARFQQGLQAAQE 775
Query: 691 WMWKNKPSGT 700
WMWKNKP+G+
Sbjct: 776 WMWKNKPAGS 785
>gi|296083224|emb|CBI22860.3| unnamed protein product [Vitis vinifera]
Length = 708
Score = 795 bits (2052), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/714 (69%), Positives = 547/714 (76%), Gaps = 45/714 (6%)
Query: 16 NYPLPQSLPVPQLSGQKRGFSGRGGP-SPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEE 74
NY +P LSGQKRGF G SPD DG FAKLFVGSVP+TA EEDIRPLFEE
Sbjct: 11 NYQVP-------LSGQKRGFGFPGRGGSPDRYDGGGFAKLFVGSVPRTATEEDIRPLFEE 63
Query: 75 HGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGE 134
HGNV+EVALIKDK+TGQQQGCCFIKYATSEEA+RAIRALHNQ+TLPGGVGPIQVRYADGE
Sbjct: 64 HGNVLEVALIKDKRTGQQQGCCFIKYATSEEAERAIRALHNQYTLPGGVGPIQVRYADGE 123
Query: 135 RERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRD 194
RERLGAVEYKLFVGSLNKQATEKEV+EIFSPYG+VEDVYLMRDELKQSRGCGFVK+SHRD
Sbjct: 124 RERLGAVEYKLFVGSLNKQATEKEVKEIFSPYGQVEDVYLMRDELKQSRGCGFVKFSHRD 183
Query: 195 MALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGPRFQPPSPRPP 254
MA+AAINALNGIYTMRGCDQPLTVRFADPKRPRPG+SR P FGGPGFGPRFQ P RP
Sbjct: 184 MAMAAINALNGIYTMRGCDQPLTVRFADPKRPRPGESRGAPAFGGPGFGPRFQAPGVRPT 243
Query: 255 PNFGDPI-TDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMP-------LNP 306
N GDPI + +IP NAW PMSP+N+GP SN GI GFGNQ PRSGD +
Sbjct: 244 MNQGDPIGSGRIPPNAWRPMSPQNLGPSSNAGIHGFGNQSLPRSGDGSISSTPGVPLGGL 303
Query: 307 GGPADVPLPGLAVSSTSSALQQNFCQPESQAPSLGQQISPLQKPLQSPQHMPP-LQLHPQ 365
GG AD L G+AVSS++++ QQ+F QP Q PS+G+QISPLQK LQSPQH+PP LQL Q
Sbjct: 304 GGSADGSLSGIAVSSSATS-QQSFNQPMLQVPSIGEQISPLQKSLQSPQHLPPSLQLQSQ 362
Query: 366 VPSSYSHTQNSH--LR---QLQI---PGQTSFSQALPSQHLLGMSGNLPASQPQGQQIAS 417
P+SY+ Q H LR QLQI GQT F+Q LPSQ LLG+SG L SQPQ QQ AS
Sbjct: 363 TPASYTQPQTPHSSLRQFGQLQISHSAGQTPFNQTLPSQQLLGLSGQLSGSQPQVQQSAS 422
Query: 418 SSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQQQLHQPYQQSPSQLAQMLSQQTQTLQAT 477
S+TA TP+N+ Q ++ NQ Q+PAP QQQL QP QSPSQLAQ+LSQQTQ LQA+
Sbjct: 423 SATAQQTPVNLNLQQHAVSVMANQHQVPAPSQQQLVQPLHQSPSQLAQLLSQQTQALQAS 482
Query: 478 FQSSQQAFSQLQQQLQLMQPSNQNLPLQQGSQGTKQQSQWAGIAPQTVASAPASAPAADL 537
FQSSQQAFSQLQQQLQLMQPSNQ L QQGSQ TKQ QW G PQTVAS PA D+
Sbjct: 483 FQSSQQAFSQLQQQLQLMQPSNQTLTSQQGSQTTKQ--QWPGTVPQTVASTATITPATDV 540
Query: 538 PVSTSIGPAAPVSSQTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQQQQ 597
P +TS A PV++Q VAP K +WTEHTSPDGYKYY+N VTG S+WEKPEELTL EQQQQ
Sbjct: 541 PSTTS---AVPVTTQAVAPVKCNWTEHTSPDGYKYYHNSVTGESRWEKPEELTLLEQQQQ 597
Query: 598 QQKPPVQQPPSQLHSQVLPAQHIPQTQQVQLQTQLRQQQQQQLQH-----------PFSS 646
QQK VQQ +Q H+QVL Q IPQ QQVQLQTQL+ Q QLQ P SS
Sbjct: 598 QQKSSVQQSQAQSHTQVLSTQQIPQAQQVQLQTQLQAHLQAQLQSQLRQHQQMQQPPVSS 657
Query: 647 SYQAPVVRGQHNAQELGYTQLPPVAAGSVNNPTRFQQGLQAAQDWMWKNKPSGT 700
S A V GQ N QELGY Q V A SVN+P RFQQGLQAAQ+WMWKNKP+G+
Sbjct: 658 S--ASGVMGQQNVQELGYAQ-AQVGASSVNDPARFQQGLQAAQEWMWKNKPAGS 708
>gi|356565014|ref|XP_003550740.1| PREDICTED: flowering time control protein FCA-like [Glycine max]
Length = 733
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/713 (63%), Positives = 511/713 (71%), Gaps = 28/713 (3%)
Query: 2 GGGFRPMSGPRSGMNYPLPQSLPVPQLSGQKRGF--SGRGGPSPDLVDGSSFAKLFVGSV 59
GGGFRPM G + P L+GQKRGF SGRGG SPD +DG SFAKLFVGSV
Sbjct: 35 GGGFRPM-GAEGPAEFGFNGHQAPPPLAGQKRGFPFSGRGGGSPDRLDGGSFAKLFVGSV 93
Query: 60 PKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTL 119
P+TA EEDIRPLFEEHGNVIEVALIKDKKTGQ QGCCFIKYATSEEAD+AIRALHNQHTL
Sbjct: 94 PRTASEEDIRPLFEEHGNVIEVALIKDKKTGQHQGCCFIKYATSEEADQAIRALHNQHTL 153
Query: 120 PGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDEL 179
PGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQAT KEVEEIFS YGRVEDVYLMRDE
Sbjct: 154 PGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATVKEVEEIFSKYGRVEDVYLMRDEK 213
Query: 180 KQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGG 239
KQSRGCGFVKYSHRDMALAAINALNGIYTMRGC+QPL VRFADPKRPR GDSR G FGG
Sbjct: 214 KQSRGCGFVKYSHRDMALAAINALNGIYTMRGCEQPLIVRFADPKRPRQGDSR-GLAFGG 272
Query: 240 PGFGPRFQPPSPRPPPNFGDPITDQI-PQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSG 298
PGFGPRF P R P N DPI D++ P NAW PM P N+GP SN G++G G L RSG
Sbjct: 273 PGFGPRFDAPGTRHPSNITDPIGDRMPPPNAWRPMHPPNVGPPSNAGLQGMGPPLISRSG 332
Query: 299 DLGMPLNPGGPADV---PLPGLAVSSTSSALQQNFCQPESQAPSLGQQISPLQKPLQSPQ 355
D+ +P N GGP P+ G + QQNF QP Q P + QQISPLQKP+QS Q
Sbjct: 333 DMALPTNAGGPMTSLGGPIDGRFQVQSMPMSQQNFNQPMPQIPPVNQQISPLQKPVQSSQ 392
Query: 356 HMP-PLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQGQQ 414
+P QL+PQ P Y T Q Q+P LPSQ + G+SG P SQPQ QQ
Sbjct: 393 ELPHSHQLYPQAPVPYPQTSLRQHAQPQLP--------LPSQQVHGVSGQFPTSQPQTQQ 444
Query: 415 IASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQQQLHQPYQQSPSQLAQMLSQQTQTL 474
A S+ T L QS++ NQQQ+P VQQQ QQSPS LAQMLSQQTQTL
Sbjct: 445 SALSAAIPQTNLETGMQSNAALTTPNQQQVPPSVQQQP---LQQSPSPLAQMLSQQTQTL 501
Query: 475 QATFQSSQQAFSQLQQQLQLMQPSNQNLPLQQGSQGTKQQSQWAG---IAPQTVASAPAS 531
QA+F SSQQAFSQLQQQLQ+MQPS+Q L QQ ++ TK+QSQWAG Q VAS A+
Sbjct: 502 QASFHSSQQAFSQLQQQLQMMQPSSQALTFQQNAEATKKQSQWAGPGTAVAQAVASTRAA 561
Query: 532 APAADLPVSTSIGPAAPVSSQTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTL 591
APAAD+P ST A P +Q +A K +WTEH SP+G+KYYYN VTG S+WEKPEEL L
Sbjct: 562 APAADVPSSTPANSALPAINQNMALVKCNWTEHISPEGFKYYYNSVTGESRWEKPEELVL 621
Query: 592 FEQQQQQQKPPVQQPPSQLHSQVLPAQHIPQTQQVQLQTQLRQQ--QQQQLQHP--FSSS 647
+EQ++QQQ+P VQQ +Q +LPAQ +PQ Q VQ Q+ L+ Q QQQ+QHP SSS
Sbjct: 622 YEQKKQQQRPSVQQSQTQSQPSILPAQQVPQIQHVQPQSHLQGQVLHQQQIQHPSSLSSS 681
Query: 648 YQAPVVRGQHNAQELGYTQLPPVAAGSVNNPTRFQQGLQAAQDWMWKNKPSGT 700
+QA V G N QE+GY QL + S +P R+ QG+ + Q+ MWKNKP+G
Sbjct: 682 FQAYGVTGPQNVQEVGYKQL-QASVISAGDPGRYSQGIHSTQELMWKNKPAGV 733
>gi|255556436|ref|XP_002519252.1| Flowering time control protein FCA, putative [Ricinus communis]
gi|223541567|gb|EEF43116.1| Flowering time control protein FCA, putative [Ricinus communis]
Length = 811
Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/674 (68%), Positives = 505/674 (74%), Gaps = 50/674 (7%)
Query: 28 LSGQKRGF--SGRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIK 85
LSGQKRGF SGRG SPD + SFAKLFVGSVP+TA EEDIRPLFE+HGNVIEVALIK
Sbjct: 136 LSGQKRGFPFSGRGN-SPDHTECGSFAKLFVGSVPRTASEEDIRPLFEQHGNVIEVALIK 194
Query: 86 DKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKL 145
DK+TGQQQGCCF+KYATSEEADRAIRALHNQHTLPGG+GPIQVR+ADGERERLGAVEYKL
Sbjct: 195 DKRTGQQQGCCFVKYATSEEADRAIRALHNQHTLPGGIGPIQVRFADGERERLGAVEYKL 254
Query: 146 FVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNG 205
FVGSLNKQATEKEVEEIFSPYG VEDVYLMRDE+KQSRGCGFVKYS R+MALAAINALNG
Sbjct: 255 FVGSLNKQATEKEVEEIFSPYGHVEDVYLMRDEMKQSRGCGFVKYSSREMALAAINALNG 314
Query: 206 IYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGPRFQPPSPRPPPNFGDPITDQI 265
IY MRGCDQPLTVRFADPKRPRPGDSR GP FGGPGFGPRFQ P PR PPNFGD + D++
Sbjct: 315 IYKMRGCDQPLTVRFADPKRPRPGDSRGGPAFGGPGFGPRFQAPGPRLPPNFGDAVGDRV 374
Query: 266 PQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNP----GGPADVPLPGLAVSS 321
P +AW PMSP++MGP N I GFG+QL PR G+L P N GGP+D PG +SS
Sbjct: 375 PPSAWRPMSPQDMGPSPNAAIHGFGSQLIPRPGELAAPPNQGGPFGGPSDGARPGHMISS 434
Query: 322 TSSALQQNFCQPESQAPSLGQQISPLQKPLQSPQHMPP-LQLHPQVPSSYSHTQNSHLRQ 380
T+ QQ+F AP +GQQISPLQKPLQSPQH+PP LQLHPQV +SYS TQ SH
Sbjct: 435 TA---QQSFNPSLQHAPPVGQQISPLQKPLQSPQHLPPSLQLHPQV-TSYSQTQTSHA-- 488
Query: 381 LQIPGQTSFSQALPSQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTN 440
GQ FSQALPSQ +GMSG L ASQPQ QQ T L PLN+ Q S+ TN
Sbjct: 489 ----GQAPFSQALPSQQYVGMSGQLSASQPQLQQ----GTPLQPPLNVNLQPHSMSAVTN 540
Query: 441 QQQLPAPVQQQLHQPYQQSPSQLAQMLSQQTQTLQATFQSSQQAFSQLQQQLQLMQPSNQ 500
QQQ+PA VQQQL P QQSPSQLAQMLSQQTQTLQATFQSSQQAFSQLQQQLQ+MQPSNQ
Sbjct: 541 QQQMPALVQQQLPPPLQQSPSQLAQMLSQQTQTLQATFQSSQQAFSQLQQQLQMMQPSNQ 600
Query: 501 NLPLQQGSQGTKQQSQWAGIAPQTVASAPASAPAADLPVSTSIGPAAPVSSQTVAPAKSS 560
N L Q SQ TKQQ QW GIAPQTVAS +A AAD+P STS APV +Q V
Sbjct: 601 N--LHQNSQPTKQQ-QWPGIAPQTVASTAPAALAADVPPSTST---APVIAQPV------ 648
Query: 561 WTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFE------------QQQQQQKPPVQQPPS 608
WTEHTSP+G+KYYYN VT S+WEKPEELTLFE + QQ P +
Sbjct: 649 WTEHTSPEGFKYYYNSVTRESRWEKPEELTLFEQQPTQQLQQMQQKPPIQQPQTQSNPQA 708
Query: 609 QLHSQVLPAQHIPQTQQVQLQTQLRQQQQQQLQHPFSSSYQAPVVRGQHNAQELGYTQLP 668
QV Q +P Q Q QTQ R QQQ Q F SSY AP VR Q +AQEL Y QL
Sbjct: 709 LPTQQVPQVQQMP--HQSQFQTQFRHQQQMQPAS-FPSSYAAPGVRVQQDAQELSYAQL- 764
Query: 669 PVAAGSVNNPTRFQ 682
P A+ S N+P+R Q
Sbjct: 765 PAASSSANDPSRIQ 778
>gi|449462184|ref|XP_004148821.1| PREDICTED: flowering time control protein FCA-like [Cucumis
sativus]
gi|449511891|ref|XP_004164081.1| PREDICTED: flowering time control protein FCA-like [Cucumis
sativus]
Length = 675
Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/709 (61%), Positives = 496/709 (69%), Gaps = 51/709 (7%)
Query: 2 GGGFRPMSGPRSGMNYPLPQSLPVPQLSGQKRG--FSGRGGPSPDLVDGSSFAKLFVGSV 59
GGFRP+ GP G Q PV GQKRG F+GRG SPD DGS+FAKLFVGSV
Sbjct: 4 AGGFRPIPGPGDGGFGSGFQPPPV---VGQKRGYPFAGRGS-SPDHSDGSNFAKLFVGSV 59
Query: 60 PKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTL 119
P+TA EE IRPLFEEHGNVIEVALIKDK+TGQQQGCCF+KY TSEEADRAIR LHNQHTL
Sbjct: 60 PRTATEEIIRPLFEEHGNVIEVALIKDKRTGQQQGCCFVKYTTSEEADRAIRNLHNQHTL 119
Query: 120 PGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDEL 179
PGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQA+EKEV+EIFSPYG VEDVYLMRDE+
Sbjct: 120 PGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQASEKEVKEIFSPYGVVEDVYLMRDEM 179
Query: 180 KQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGG 239
KQSRGCGFVKYSHRDMALAAINALNGI+TMRGCDQPL+VRFADPK+PRPGDSR P FGG
Sbjct: 180 KQSRGCGFVKYSHRDMALAAINALNGIFTMRGCDQPLSVRFADPKKPRPGDSRGTPAFGG 239
Query: 240 PGFGPRFQPPSPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGD 299
PGFG RFQPP PRP PNFG+ + D+IP + R P + GI FG QLPPRS +
Sbjct: 240 PGFGSRFQPPGPRPTPNFGEFMGDRIPIDV------RGFRPPIDAGIHPFGGQLPPRSSE 293
Query: 300 LGMPLNPGGPAD---VPLPGLAVSSTSSALQQNFCQPESQAPSLGQQISPLQKPLQSPQH 356
+G+PLN GG A P GL V+ SSA QQNF Q SQ P G Q+SP+ K QSP+
Sbjct: 294 MGLPLNLGGLAGGFRGPNQGL-VNPASSASQQNFNQSASQHPPPGLQVSPVLKTSQSPKQ 352
Query: 357 MPPL-QLHPQVPSSYSHTQNS--------HLRQLQIPGQTSFSQALPSQHLLGMSGNLPA 407
+PP QLH +YS TQ S + GQ FSQ PSQ G+ G L
Sbjct: 353 LPPSNQLHSHA-LTYSQTQTSPALAQQHNQPQNFNSSGQLPFSQPAPSQESPGLGGQLAV 411
Query: 408 SQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQQQLHQPYQQSPSQLAQML 467
SQ G ASS+ A TPL++ QS + +QQQLP P+ QP Q SPSQLA ML
Sbjct: 412 SQSMG---ASSAAATHTPLSMNLQSHA--AAPSQQQLPTPI-----QPPQNSPSQLAHML 461
Query: 468 SQQTQTLQATFQSSQQAFSQLQQQLQLMQPSNQNLPLQQGSQGTKQQSQWAGIAPQTVAS 527
SQQ QTLQA FQSSQQAFSQLQQQLQL+QP NQ+ LQ SQ KQQ WAG+ V
Sbjct: 462 SQQKQTLQARFQSSQQAFSQLQQQLQLIQPPNQSSTLQPSSQTIKQQPHWAGV----VTH 517
Query: 528 APASAPAADLPVSTSIGPAAPVSSQTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPE 587
ASA +A TS P A +++Q VAP K +WTEHTSPDGYKYYYN VTG SKWE+PE
Sbjct: 518 TAASAASATSDAHTSTVPPAAINTQVVAPVKCNWTEHTSPDGYKYYYNSVTGESKWERPE 577
Query: 588 ELTLFEQQQQQQKPPVQQPPSQLHSQVLPAQHIPQTQQVQLQTQLRQQQQQQLQHPFSSS 647
EL++ E QQQQKPP+ QP +Q H Q+L Q + QT Q QLQTQ Q Q Q+ HP
Sbjct: 578 ELSVIE--QQQQKPPILQPHNQPHPQLLSTQQLSQTPQAQLQTQF--QTQSQMPHP---- 629
Query: 648 YQAPVVRGQHNAQELGYTQLPPVAAGSVNNPTRFQQGLQAAQDWMWKNK 696
P+ + ++QE YTQ+ P A S+N+PTRF QG Q+W WKNK
Sbjct: 630 --QPLQQPSFHSQEGAYTQMQP-ANNSINDPTRFHQGFPTTQEWAWKNK 675
>gi|356521753|ref|XP_003529516.1| PREDICTED: flowering time control protein FCA-like [Glycine max]
Length = 737
Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/715 (63%), Positives = 508/715 (71%), Gaps = 28/715 (3%)
Query: 2 GGGFRPMSGPRSGMNYPLPQSLPVPQLSGQKRGF--SGRGGPSPDLVDGSSFAKLFVGSV 59
GGGFRPM G G P P L+GQKRGF SGRGG SPD +DG +FAKLFVGSV
Sbjct: 35 GGGFRPMGGEGPGEFGFNGHQAP-PPLAGQKRGFPFSGRGGGSPDHLDGGNFAKLFVGSV 93
Query: 60 PKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTL 119
P+TA EEDIRPLFEEHGNVIEVALIKDKKTGQ QGCCFIKYATSEEAD+AIRALHNQHTL
Sbjct: 94 PRTATEEDIRPLFEEHGNVIEVALIKDKKTGQHQGCCFIKYATSEEADQAIRALHNQHTL 153
Query: 120 PGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDEL 179
PGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQAT KEVEEIFS YGRVEDVYLMRDE
Sbjct: 154 PGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATVKEVEEIFSKYGRVEDVYLMRDEK 213
Query: 180 KQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGG 239
KQSRGCGFVKYSHRDMALAAINALNGIYTMRGC+QPL VRFADPKRPR GDSR G FGG
Sbjct: 214 KQSRGCGFVKYSHRDMALAAINALNGIYTMRGCEQPLIVRFADPKRPRQGDSR-GLAFGG 272
Query: 240 PGFGPRFQPPSPRPPPNFGDPITDQI-PQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSG 298
PGFGPRF P R P N DP+ D++ P NAWHP+ P NMGP SN G G G+ L PRSG
Sbjct: 273 PGFGPRFDAPGTRHPSNITDPMGDRMPPSNAWHPLHPPNMGPSSNAGFHGMGSPLLPRSG 332
Query: 299 DLGMPLNPGGPADV---PLPGLAVSSTSSALQQNFCQPESQAPSLGQQISPLQKPLQSPQ 355
D+ +P + GGP P+ G + QQNF QP Q P + QQISPLQKP+QS Q
Sbjct: 333 DMALPTDAGGPMTSLGGPIDGRFQVQSIPMSQQNFNQPMPQIPPVNQQISPLQKPVQSSQ 392
Query: 356 HMPP-LQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQGQQ 414
+PP QL+PQ P Y T LRQ P + + LPSQ + G+SG SQPQ QQ
Sbjct: 393 ELPPSHQLYPQAPVPYPQTS---LRQHGQPQLSLSAGPLPSQKIHGVSGQFLTSQPQTQQ 449
Query: 415 IASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQQQLHQPYQQSPSQLAQMLSQQTQTL 474
A S+ T L+ QS + T Q P Q QP QQSPS LAQMLSQQTQTL
Sbjct: 450 SALSAAIPQTHLDTGMQSHTTL--TTPNQQQVPPSVQQQQPLQQSPSPLAQMLSQQTQTL 507
Query: 475 QATFQSSQQAFSQLQQQLQLMQPSNQNLPLQQGSQGTKQQSQWAGIAP--QTVASAPASA 532
QA+F SSQQAFSQLQQQLQ+MQPS+Q L LQQ ++ K+QSQWAG P QTVAS A+A
Sbjct: 508 QASFHSSQQAFSQLQQQLQMMQPSSQALTLQQNAEANKKQSQWAGPGPVAQTVASTLAAA 567
Query: 533 PAADLPVSTSIGPAAPVSSQTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLF 592
PAAD+P ST A P +Q +A K +WTEH SP+G+KYYYN VTG S+WEKPEELTL
Sbjct: 568 PAADVPSSTPANSALPAINQNMALVKCNWTEHISPEGFKYYYNSVTGESRWEKPEELTLH 627
Query: 593 EQQQQQQKPPVQQPPSQLHSQVLPAQHIPQTQQVQLQTQLRQQQQQQLQHP-------FS 645
EQQ+QQQ+P VQQ +Q +LPAQ +PQ QQVQ Q+ L Q Q+ H S
Sbjct: 628 EQQKQQQRPSVQQSQTQSQPSILPAQQVPQIQQVQPQSHL----QGQVLHQQQIQQPSLS 683
Query: 646 SSYQAPVVRGQHNAQELGYTQLPPVAAGSVNNPTRFQQGLQAAQDWMWKNKPSGT 700
S +QA V G N QE+GY QL + S +P R+ QG+ + Q+ MWKNKP+G
Sbjct: 684 SLFQAYGVTGPQNVQEVGYKQL-QASVISAGDPGRYSQGIHSTQELMWKNKPAGV 737
>gi|60459259|gb|AAX20016.1| FCA gamma [Pisum sativum]
Length = 743
Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/717 (58%), Positives = 479/717 (66%), Gaps = 33/717 (4%)
Query: 2 GGGFRPMSGPRSGMNYPLPQSLPVPQLSGQKRGF--SGRGGPSPDLVDGSSFAKLFVGSV 59
G GFRPM G G ++ P P +SGQKRGF SGRG SPD DG +FAKLFVGSV
Sbjct: 42 GEGFRPMGGEGPG-DFGFNNHQP-PVMSGQKRGFPFSGRGA-SPDHFDGGNFAKLFVGSV 98
Query: 60 PKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTL 119
P+TA EEDIRPLFEEHGNVIEVALIKD+KTGQ QGCCFIKYATSEEAD+AIRALHNQHTL
Sbjct: 99 PRTATEEDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYATSEEADQAIRALHNQHTL 158
Query: 120 PGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDEL 179
PGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQA KEVEE+FS YGRVEDVYLMRD+
Sbjct: 159 PGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQALVKEVEEVFSKYGRVEDVYLMRDDK 218
Query: 180 KQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGG 239
KQSRGCGFVKYSHRDMALAAIN LNGIYTMRGCDQPL VRFADPKRPR GDSR GP G
Sbjct: 219 KQSRGCGFVKYSHRDMALAAINGLNGIYTMRGCDQPLIVRFADPKRPRQGDSR-GPVLGA 277
Query: 240 PGFGPRFQPPSPRPPPNFGDPITDQI-PQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSG 298
GFGPR P R P N DP+ D++ P NAW P+ N GP N G G G PRSG
Sbjct: 278 AGFGPRLDAPGTRLPSNNSDPMGDRMPPPNAWRPIHQPNTGPSFNAGFHGMGPPSMPRSG 337
Query: 299 DLGMPLNPGGPADVPLPGLAVS--------STSSALQQNFCQPESQAPSLGQQISPLQKP 350
D+ +P+N GGP + G+ VS S S+ QQNF QP SQ P + QQI P QKP
Sbjct: 338 DMALPINAGGPMN----GMGVSLDVRFQAQSPSAMPQQNFNQPRSQIPPVNQQIPPSQKP 393
Query: 351 LQSPQHMPP-LQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQ 409
+QS Q PP QL+PQ P Y Q S L L+ GQ A Q LG++ Q
Sbjct: 394 IQSSQEFPPSHQLYPQAPMPYP--QKSTLPSLRQHGQPQPLSA--GQQGLGINAQFSVPQ 449
Query: 410 PQGQQIASSSTALPTPLNIKPQSSSLPGGTNQ------QQLPAPVQQQLHQPYQQSPSQL 463
PQ Q+ S+T T L+ QS++ N+ Q QQQ QP QQSPSQL
Sbjct: 450 PQAQKSVLSATFPQTSLDTNIQSNTALTTPNRQQIPPSMQQQQQQQQQPLQPLQQSPSQL 509
Query: 464 AQMLSQQTQTLQATFQSSQQAFSQLQQQLQLMQPSNQNLPLQQGSQGTKQQSQWAGIAPQ 523
AQ++SQQTQTLQA+F SSQQAFSQLQQQLQ++QPS+Q + LQ ++ TK QSQW G
Sbjct: 510 AQLVSQQTQTLQASFHSSQQAFSQLQQQLQMIQPSSQAMTLQHHAEATKTQSQWGGPVSH 569
Query: 524 TVASAPASAPAADLPVSTSIGPAAPVSSQTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKW 583
A +APAA P ST+ + SQ K +WTEH SP+G+KYYYN VTG S+W
Sbjct: 570 AATGAHVAAPAAGTPSSTAATSSVQAISQNTTLPKCNWTEHLSPEGFKYYYNSVTGESRW 629
Query: 584 EKPEELTLFEQQQQQQKPPVQQPPSQLHSQVLPAQHIPQTQQVQLQTQLRQQQQQQLQHP 643
EKPEELTLF QQ++Q QQ +Q + P Q I Q QQV+ Q+ R+Q Q
Sbjct: 630 EKPEELTLFGQQKRQHSQSDQQSQNQSQPSIPPTQQIAQNQQVKPQSHFREQVLHHQQLQ 689
Query: 644 FSSSYQAPVVRGQHNAQELGYTQLPPVAAGSVNNPTRFQQGLQAAQDWMWKNKPSGT 700
SS+QA V G + QELGY Q V+AG P R+ QG+ AQ+ MWKN+P+G
Sbjct: 690 QLSSFQAYGVTGHQSVQELGYKQTSFVSAGG---PGRYSQGINTAQELMWKNRPAGV 743
>gi|357479035|ref|XP_003609803.1| FCA [Medicago truncatula]
gi|355510858|gb|AES92000.1| FCA [Medicago truncatula]
Length = 862
Score = 639 bits (1649), Expect = e-180, Method: Compositional matrix adjust.
Identities = 421/714 (58%), Positives = 481/714 (67%), Gaps = 42/714 (5%)
Query: 2 GGGFRPMSGPRSGMNYPLPQSLPVPQLSGQKRGF--SGRGGPSPDLVDGSSFAKLFVGSV 59
G GFRP+ G G N LP P LSGQKRGF SGRG SPD DG +FAKLFVGSV
Sbjct: 112 GDGFRPVGGDEFGFN------LPPPPLSGQKRGFPFSGRGA-SPDHSDGGNFAKLFVGSV 164
Query: 60 PKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTL 119
P+TA EEDIRPLFEEHGNV+EVALIKD+KTGQ QGCCFIKYATSEEAD+AIRALHN+HTL
Sbjct: 165 PRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIRALHNRHTL 224
Query: 120 PGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDEL 179
PGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQA+ KEVEE+FS YGR+EDVYLMRD+
Sbjct: 225 PGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQASVKEVEEVFSKYGRIEDVYLMRDDQ 284
Query: 180 KQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGG 239
KQSRGCGFVKYSHRDMALAAINALNGIYTMRGC+QPL VRFADPKRPR GDSR GP FG
Sbjct: 285 KQSRGCGFVKYSHRDMALAAINALNGIYTMRGCEQPLIVRFADPKRPRQGDSR-GPAFGS 343
Query: 240 PGFGPRFQPPSPRPPPNFGDPITDQI-PQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSG 298
GFGPR P R P N DP+ D I P NAW P+ N G N G G G L PRSG
Sbjct: 344 AGFGPRLDSPGTRLPSNNSDPMGDHIPPPNAWRPIPQPNTGTSFNAGFHGMGPPLIPRSG 403
Query: 299 DLGMPLNPGGPADVPLPGLAVS--------STSSALQQNFCQPESQAPSLGQQISPLQKP 350
D+ +P+N GG P+ G+ VS S S+ QQNF QP+ Q P + QQI P QKP
Sbjct: 404 DMALPINAGG----PMTGMGVSIDGRFQTQSPSAMPQQNFNQPQPQIPPVNQQIPPSQKP 459
Query: 351 LQSPQHMPP-LQLHPQVPSSYSHTQNS-HLRQLQIPGQTSFSQALPSQ-HLLGMSGNLPA 407
+QS Q PP QL+PQ P Y T RQ P Q LP+ LG++
Sbjct: 460 IQSSQEFPPSHQLYPQAPIPYPQTSTRPSFRQHGQP------QPLPAGPQGLGINAQFSV 513
Query: 408 SQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPV--QQQLHQPYQQSPSQLAQ 465
SQPQ QQ S+T T L+ QS++ +QQQ+P + QQ QP QSPSQLAQ
Sbjct: 514 SQPQSQQGVLSATFPQTSLDTSMQSNTALTTPSQQQIPPSMQQQQHPLQPLPQSPSQLAQ 573
Query: 466 MLSQQTQTLQATFQSSQQAFSQLQQQLQLMQPSNQNLPLQQGSQGTKQQSQWAGIAPQTV 525
+LSQQTQTLQA+F SSQQAFSQLQQQLQ+MQPS+Q PLQ ++ TK QSQW G Q
Sbjct: 574 LLSQQTQTLQASFHSSQQAFSQLQQQLQMMQPSSQASPLQHHAEATKTQSQWGGTVSQAA 633
Query: 526 ASAPASAPAADLPVSTSIGPAAPVSSQTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEK 585
+APAA +P ST + SQ +WTEH SP+G+KYYYN VTG S+WEK
Sbjct: 634 TGTHVAAPAAGVPSSTPATSSVQPISQNTTLGNCNWTEHLSPEGFKYYYNSVTGESRWEK 693
Query: 586 PEELTLFEQQQQQQKPPVQQPPSQLHSQVLPAQHIPQTQQVQLQTQLR-QQQQQQLQHPF 644
PEELT EQQ+Q VQQ Q + P Q + Q QQVQ Q+ R Q QQ+Q P
Sbjct: 694 PEELTSSEQQKQLLNQSVQQSQIQGQPSIPPTQQVAQNQQVQPQSHFRGQVHHQQIQQP- 752
Query: 645 SSSYQAPVVRGQHNAQELGY--TQLPPVAAGSVNNPTRFQQGLQAAQDWMWKNK 696
SS+QA V G N QELGY +Q V+AG +P R+ QG+ Q+ MWKN+
Sbjct: 753 -SSFQAYGVTGHQNVQELGYKQSQTSFVSAG---DPGRYSQGINNTQELMWKNR 802
>gi|18150431|gb|AAL61622.1|AF414188_1 FCA gamma [Brassica napus]
Length = 715
Score = 576 bits (1485), Expect = e-161, Method: Compositional matrix adjust.
Identities = 361/701 (51%), Positives = 424/701 (60%), Gaps = 111/701 (15%)
Query: 28 LSGQKRG--------FSGRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVI 79
LSGQKRG F+G DL D SS KLFVGSVP+TA EE++RP FE+HGNV+
Sbjct: 75 LSGQKRGRPLSEQSSFTGT-----DLTDRSSMVKLFVGSVPRTATEEEVRPFFEQHGNVL 129
Query: 80 EVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLG 139
EVA IKDK+TGQQQGCCF+KYATSE+ADRAIRALHNQ TLPGG G +QVRYADGERER+G
Sbjct: 130 EVAFIKDKRTGQQQGCCFVKYATSEDADRAIRALHNQITLPGGTGLVQVRYADGERERIG 189
Query: 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAA 199
AVE+KLFVGSLNKQATE EVEE+F +GRVEDVYLMRDE +QSRGCGFVKYS ++ A+AA
Sbjct: 190 AVEFKLFVGSLNKQATENEVEELFLQFGRVEDVYLMRDEYRQSRGCGFVKYSSKETAMAA 249
Query: 200 INALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGPRFQPPSPRPPPNFGD 259
I+ LNG YTMRGC+QPL VRFADPKRP+PG+SR G GPRFQ PRP N GD
Sbjct: 250 IDGLNGTYTMRGCNQPLIVRFADPKRPKPGESREVAHPVGLCSGPRFQASGPRPTSNLGD 309
Query: 260 PITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNPGG-------PADV 312
D N W PM+ NMGP N GIRG G+ L PR G +P N GG PA
Sbjct: 310 LSVDVSHTNPWRPMNSPNMGPPGNTGIRGTGSDLAPRPGQATLPSNQGGPLGGYVVPAIN 369
Query: 313 PLPGLAVSSTSSALQQNFCQPESQAPSLGQQISPLQKPLQSPQHMPPLQLHPQVPSSYSH 372
PLP VSS++++ QQN GQ +SPLQKPL SPQ +P L P
Sbjct: 370 PLP---VSSSATSQQQNR--------GAGQHMSPLQKPLHSPQDVP---LRP-------- 407
Query: 373 TQNSHLRQLQIPGQTSFSQALPS-QHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQ 431
QT+F A S Q+ G S LP SQ + QQ + +TA PLNI +
Sbjct: 408 -------------QTNFPGAQASLQNPYGYSSQLPTSQLRPQQNVTPATAPQAPLNINLR 454
Query: 432 SSSLPGGTNQQQLPAPVQQQLHQPYQQSPSQLAQMLSQQTQTLQATFQSSQQAFSQLQQQ 491
+ + T+ QL QQ Q Q PS+L Q+LSQQTQTLQATFQSSQQAFSQLQ+Q
Sbjct: 455 PTPVSSATD--QLRPRAQQPPPQKMQHPPSELVQLLSQQTQTLQATFQSSQQAFSQLQEQ 512
Query: 492 LQLMQPSNQNLPLQQGSQGTKQQSQWAGIAPQTVASAPASAPAADLPVSTSIGPAAPVSS 551
+Q MQ NQ LP GSQ + QWAG A TV S AS P + + AAP ++
Sbjct: 513 VQSMQQPNQKLP---GSQTGHGKQQWAGSAIPTVVSTTASTPVSYMQT------AAPAAT 563
Query: 552 QTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQQQQQQKPPVQQPPSQ-- 609
Q+V K +WTEHTSPDG+KYYYN TG SKWEKPEE+ LFE+QQQQ P + QP +Q
Sbjct: 564 QSVVSRKCNWTEHTSPDGFKYYYNGQTGESKWEKPEEMVLFERQQQQ--PTINQPQTQSQ 621
Query: 610 ---------------------------LHSQVLPAQHIPQTQQVQLQTQLRQQQQQQLQH 642
++S V P + Q Q + Q Q
Sbjct: 622 QALYSQPMQQQPQQVHQQYQGQYVQQPIYSSVYPTPGVSQNAQYPPPLGVSQNS----QF 677
Query: 643 PFSSSYQAPVVRGQHNAQELGYTQLPPVAAGSVNNPTRFQQ 683
P S + Q NAQE G T PV S+NNP+R QQ
Sbjct: 678 PMSGTGQ--------NAQEFGRTDT-PVGVASINNPSRTQQ 709
>gi|334302803|sp|O04425.2|FCA_ARATH RecName: Full=Flowering time control protein FCA
gi|2244986|emb|CAB10407.1| FCA gamma protein [Arabidopsis thaliana]
gi|7268377|emb|CAB78670.1| FCA gamma protein [Arabidopsis thaliana]
Length = 747
Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust.
Identities = 367/703 (52%), Positives = 439/703 (62%), Gaps = 66/703 (9%)
Query: 20 PQSLPVPQ-LSGQKRGF--SGRGG-PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEH 75
P + PV Q LSGQKRG+ S G D+ D SS KLFVGSVP+TA EE+IRP FE+H
Sbjct: 84 PTTPPVQQPLSGQKRGYPISDHGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQH 143
Query: 76 GNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGER 135
GNV+EVALIKDK+TGQQQGCCF+KYATS++ADRAIRALHNQ TLPGG GP+QVRYADGER
Sbjct: 144 GNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGER 203
Query: 136 ERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDM 195
ER+G +E+KLFVGSLNKQATEKEVEEIF +G VEDVYLMRDE +QSRGCGFVKYS ++
Sbjct: 204 ERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKET 263
Query: 196 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGPRFQPPSPRPPP 255
A+AAI+ LNG YTMRGC+QPL VRFA+PKRP+PG+SR G G GPRFQ PRP
Sbjct: 264 AMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGESREMAPPVGLGSGPRFQASGPRPTS 323
Query: 256 NFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNPGGP------ 309
NFGD D N W P + RN+GP SN GIRG G+ PP+ G +P N GGP
Sbjct: 324 NFGDSSGDVSHTNPWRPATSRNVGPPSNTGIRGAGSDFPPKPGQATLPSNQGGPLGGYGV 383
Query: 310 -ADVPLPGLAVSSTSSALQQNFCQPESQAPSLGQQISPLQKPLQSPQHMPPLQLHPQVPS 368
PLP VSS+++ QQN + GQ I+PL+KPL SPQ + PL L PQ
Sbjct: 384 PPLNPLPVPGVSSSATLQQQNR--------AAGQHITPLKKPLHSPQGL-PLPLRPQT-- 432
Query: 369 SYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQGQQIASSSTALPTPLNI 428
PG +QA P Q+ S LP SQ QQ S +TA TPLNI
Sbjct: 433 -------------NFPG----AQA-PLQNPYAYSSQLPTSQLPPQQNISRATAPQTPLNI 474
Query: 429 KPQSSSLPGGTNQQQLPAPVQQQLHQPYQQSPSQLAQMLSQQTQTLQATFQSSQQAFSQL 488
+ +++ T Q P QQQ Q Q PS+LAQ+LSQQTQ+LQATFQSSQQA SQL
Sbjct: 475 NLRPTTVSSAT--VQFPPRSQQQPLQKMQHPPSELAQLLSQQTQSLQATFQSSQQAISQL 532
Query: 489 QQQLQLMQPSNQNLPLQQGSQGTKQQSQWAGIAPQTVASAPASAPAADLPVSTSIGPAAP 548
QQQ+Q MQ NQNLPL Q + KQ QWAG A VAS S P + + AAP
Sbjct: 533 QQQVQSMQQPNQNLPLSQNGRAGKQ--QWAGSAIPRVASTTGSTPV------SYVQTAAP 584
Query: 549 VSSQTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQQQQQQKPPVQQPPS 608
SQ+V K +WTEHTSPDG+KYYYN +TG SKWEKPEE+ +FE++QQ+Q+ ++P
Sbjct: 585 AVSQSVGSVKCTWTEHTSPDGFKYYYNGLTGESKWEKPEEMIVFEREQQKQQQHQEKPTI 644
Query: 609 QLHSQVLPAQHIPQTQQVQLQ---------------TQLRQQQQQQLQHPFSSSYQAPVV 653
Q L Q Q T Q P + Q P+
Sbjct: 645 QQSQTQLQPLQQQPQQVQQQYQGQQLQQPFYSSLYPTPGASHNTQYPSLPVGQNSQFPMS 704
Query: 654 RGQHNAQELGYTQLPPVAAGSVNNPTRFQQGLQAAQDWMWKNK 696
NAQ+ T + PV A S+N+ +R QQ Q+ Q+ MWKNK
Sbjct: 705 GIGQNAQDYARTHI-PVGAASMNDISRTQQSRQSPQELMWKNK 746
>gi|332658328|gb|AEE83728.1| RNA binding / abscisic acid binding protein [Arabidopsis thaliana]
Length = 672
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 366/703 (52%), Positives = 438/703 (62%), Gaps = 66/703 (9%)
Query: 20 PQSLPVPQ-LSGQKRGF--SGRGG-PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEH 75
P + PV Q LSGQKRG+ S G D+ D SS KLFVGSVP+TA EE+IRP FE+H
Sbjct: 9 PTTPPVQQPLSGQKRGYPISDHGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQH 68
Query: 76 GNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGER 135
GNV+EVALIKDK+TGQQQGCCF+KYATS++ADRAIRALHNQ TLPGG GP+QVRYADGER
Sbjct: 69 GNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGER 128
Query: 136 ERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDM 195
ER+G +E+KLFVGSLNKQATEKEVEEIF +G VEDVYLMRDE +QSRGCGFVKYS ++
Sbjct: 129 ERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKET 188
Query: 196 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGPRFQPPSPRPPP 255
A+AAI+ LNG YTMRGC+QPL VRFA+PKRP+PG+SR G G GPRFQ PRP
Sbjct: 189 AMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGESREMAPPVGLGSGPRFQASGPRPTS 248
Query: 256 NFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNPGGP------ 309
NFGD D N W P + RN+GP SN GIRG G+ P+ G +P N GGP
Sbjct: 249 NFGDSSGDVSHTNPWRPATSRNVGPPSNTGIRGAGSDFSPKPGQATLPSNQGGPLGGYGV 308
Query: 310 -ADVPLPGLAVSSTSSALQQNFCQPESQAPSLGQQISPLQKPLQSPQHMPPLQLHPQVPS 368
PLP VSS+++ QQN + GQ I+PL+KPL SPQ + PL L PQ
Sbjct: 309 PPLNPLPVPGVSSSATLQQQNR--------AAGQHITPLKKPLHSPQGL-PLPLRPQT-- 357
Query: 369 SYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQGQQIASSSTALPTPLNI 428
PG +QA P Q+ S LP SQ QQ S +TA TPLNI
Sbjct: 358 -------------NFPG----AQA-PLQNPYAYSSQLPTSQLPPQQNISRATAPQTPLNI 399
Query: 429 KPQSSSLPGGTNQQQLPAPVQQQLHQPYQQSPSQLAQMLSQQTQTLQATFQSSQQAFSQL 488
+ +++ T Q P QQQ Q Q PS+LAQ+LSQQTQ+LQATFQSSQQA SQL
Sbjct: 400 NLRPTTVSSAT--VQFPPRSQQQPLQKMQHPPSELAQLLSQQTQSLQATFQSSQQAISQL 457
Query: 489 QQQLQLMQPSNQNLPLQQGSQGTKQQSQWAGIAPQTVASAPASAPAADLPVSTSIGPAAP 548
QQQ+Q MQ NQNLPL Q + KQ QWAG A VAS S P + + AAP
Sbjct: 458 QQQVQSMQQPNQNLPLSQNGRAGKQ--QWAGSAIPRVASTTGSTPV------SYVQTAAP 509
Query: 549 VSSQTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQQQQQQKPPVQQPPS 608
SQ+V K +WTEHTSPDG+KYYYN +TG SKWEKPEE+ +FE++QQ+Q+ ++P
Sbjct: 510 AVSQSVGSVKCTWTEHTSPDGFKYYYNGLTGESKWEKPEEMIVFEREQQKQQQHQEKPTI 569
Query: 609 QLHSQVLPAQHIPQTQQVQLQ---------------TQLRQQQQQQLQHPFSSSYQAPVV 653
Q L Q Q T Q P + Q P+
Sbjct: 570 QQSQTQLQPLQQQPQQVQQQYQGQQLQQPFYSSLYPTPGASHNTQYPSLPVGQNSQFPMS 629
Query: 654 RGQHNAQELGYTQLPPVAAGSVNNPTRFQQGLQAAQDWMWKNK 696
NAQ+ T + PV A S+N+ +R QQ Q+ Q+ MWKNK
Sbjct: 630 GIGQNAQDYARTHI-PVGAASMNDISRTQQSRQSPQELMWKNK 671
>gi|2204089|emb|CAB05388.1| FCA gamma [Arabidopsis thaliana]
gi|57169178|gb|AAW38964.1| FCA [Arabidopsis thaliana]
Length = 747
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 366/703 (52%), Positives = 438/703 (62%), Gaps = 66/703 (9%)
Query: 20 PQSLPVPQ-LSGQKRGF--SGRGG-PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEH 75
P + PV Q LSGQKRG+ S G D+ D SS KLFVGSVP+TA EE+IRP FE+H
Sbjct: 84 PTTPPVQQPLSGQKRGYPISDHGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQH 143
Query: 76 GNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGER 135
GNV+EVALIKDK+TGQQQGCCF+KYATS++ADRAIRALHNQ TLPGG GP+QVRYADGER
Sbjct: 144 GNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGER 203
Query: 136 ERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDM 195
ER+G +E+KLFVGSLNKQATEKEVEEIF +G VEDVYLMRDE +QSRGCGFVKYS ++
Sbjct: 204 ERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKET 263
Query: 196 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGPRFQPPSPRPPP 255
A+AAI+ LNG YTMRGC+QPL VRFA+PKRP+PG+SR G G GPRFQ PRP
Sbjct: 264 AMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGESRDMAPPVGLGSGPRFQASGPRPTS 323
Query: 256 NFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNPGGP------ 309
NFGD D N W P + RN+GP SN GIRG G+ P+ G +P N GGP
Sbjct: 324 NFGDSSGDVSHTNPWRPATSRNVGPPSNTGIRGAGSDFSPKPGQATLPSNQGGPLGGYGV 383
Query: 310 -ADVPLPGLAVSSTSSALQQNFCQPESQAPSLGQQISPLQKPLQSPQHMPPLQLHPQVPS 368
PLP VSS+++ QQN + GQ I+PL+KPL SPQ + PL L PQ
Sbjct: 384 PPLNPLPVPGVSSSATLQQQNR--------AAGQHITPLKKPLHSPQGL-PLPLRPQT-- 432
Query: 369 SYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQGQQIASSSTALPTPLNI 428
PG +QA P Q+ S LP SQ QQ S +TA TPLNI
Sbjct: 433 -------------NFPG----AQA-PLQNPYAYSSQLPTSQLPPQQNISRATAPQTPLNI 474
Query: 429 KPQSSSLPGGTNQQQLPAPVQQQLHQPYQQSPSQLAQMLSQQTQTLQATFQSSQQAFSQL 488
+ +++ T Q P QQQ Q Q PS+LAQ+LSQQTQ+LQATFQSSQQA SQL
Sbjct: 475 NLRPTTVSSAT--VQFPPRSQQQPLQKMQHPPSELAQLLSQQTQSLQATFQSSQQAISQL 532
Query: 489 QQQLQLMQPSNQNLPLQQGSQGTKQQSQWAGIAPQTVASAPASAPAADLPVSTSIGPAAP 548
QQQ+Q MQ NQNLPL Q + KQ QWAG A VAS S P + + AAP
Sbjct: 533 QQQVQSMQQPNQNLPLSQNGRAGKQ--QWAGSAIPRVASTTGSTPV------SYVQTAAP 584
Query: 549 VSSQTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQQQQQQKPPVQQPPS 608
SQ+V K +WTEHTSPDG+KYYYN +TG SKWEKPEE+ +FE++QQ+Q+ ++P
Sbjct: 585 AVSQSVGSVKCTWTEHTSPDGFKYYYNGLTGESKWEKPEEMIVFEREQQKQQQHQEKPTI 644
Query: 609 QLHSQVLPAQHIPQTQQVQLQ---------------TQLRQQQQQQLQHPFSSSYQAPVV 653
Q L Q Q T Q P + Q P+
Sbjct: 645 QQSQTQLQPLQQQPQQVQQQYQGQQLQQPFYSSLYPTPGASHNTQYPSLPVGQNSQFPMS 704
Query: 654 RGQHNAQELGYTQLPPVAAGSVNNPTRFQQGLQAAQDWMWKNK 696
NAQ+ T + PV A S+N+ +R QQ Q+ Q+ MWKNK
Sbjct: 705 GIGQNAQDYARTHI-PVGAASMNDISRTQQSRQSPQELMWKNK 746
>gi|186511879|ref|NP_849543.2| RNA binding / abscisic acid binding protein [Arabidopsis thaliana]
gi|332658325|gb|AEE83725.1| RNA binding / abscisic acid binding protein [Arabidopsis thaliana]
Length = 747
Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust.
Identities = 366/703 (52%), Positives = 438/703 (62%), Gaps = 66/703 (9%)
Query: 20 PQSLPVPQ-LSGQKRGF--SGRGG-PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEH 75
P + PV Q LSGQKRG+ S G D+ D SS KLFVGSVP+TA EE+IRP FE+H
Sbjct: 84 PTTPPVQQPLSGQKRGYPISDHGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQH 143
Query: 76 GNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGER 135
GNV+EVALIKDK+TGQQQGCCF+KYATS++ADRAIRALHNQ TLPGG GP+QVRYADGER
Sbjct: 144 GNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGER 203
Query: 136 ERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDM 195
ER+G +E+KLFVGSLNKQATEKEVEEIF +G VEDVYLMRDE +QSRGCGFVKYS ++
Sbjct: 204 ERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKET 263
Query: 196 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGPRFQPPSPRPPP 255
A+AAI+ LNG YTMRGC+QPL VRFA+PKRP+PG+SR G G GPRFQ PRP
Sbjct: 264 AMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGESREMAPPVGLGSGPRFQASGPRPTS 323
Query: 256 NFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNPGGP------ 309
NFGD D N W P + RN+GP SN GIRG G+ P+ G +P N GGP
Sbjct: 324 NFGDSSGDVSHTNPWRPATSRNVGPPSNTGIRGAGSDFSPKPGQATLPSNQGGPLGGYGV 383
Query: 310 -ADVPLPGLAVSSTSSALQQNFCQPESQAPSLGQQISPLQKPLQSPQHMPPLQLHPQVPS 368
PLP VSS+++ QQN + GQ I+PL+KPL SPQ + PL L PQ
Sbjct: 384 PPLNPLPVPGVSSSATLQQQNR--------AAGQHITPLKKPLHSPQGL-PLPLRPQT-- 432
Query: 369 SYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQGQQIASSSTALPTPLNI 428
PG +QA P Q+ S LP SQ QQ S +TA TPLNI
Sbjct: 433 -------------NFPG----AQA-PLQNPYAYSSQLPTSQLPPQQNISRATAPQTPLNI 474
Query: 429 KPQSSSLPGGTNQQQLPAPVQQQLHQPYQQSPSQLAQMLSQQTQTLQATFQSSQQAFSQL 488
+ +++ T Q P QQQ Q Q PS+LAQ+LSQQTQ+LQATFQSSQQA SQL
Sbjct: 475 NLRPTTVSSAT--VQFPPRSQQQPLQKMQHPPSELAQLLSQQTQSLQATFQSSQQAISQL 532
Query: 489 QQQLQLMQPSNQNLPLQQGSQGTKQQSQWAGIAPQTVASAPASAPAADLPVSTSIGPAAP 548
QQQ+Q MQ NQNLPL Q + KQ QWAG A VAS S P + + AAP
Sbjct: 533 QQQVQSMQQPNQNLPLSQNGRAGKQ--QWAGSAIPRVASTTGSTPV------SYVQTAAP 584
Query: 549 VSSQTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQQQQQQKPPVQQPPS 608
SQ+V K +WTEHTSPDG+KYYYN +TG SKWEKPEE+ +FE++QQ+Q+ ++P
Sbjct: 585 AVSQSVGSVKCTWTEHTSPDGFKYYYNGLTGESKWEKPEEMIVFEREQQKQQQHQEKPTI 644
Query: 609 QLHSQVLPAQHIPQTQQVQLQ---------------TQLRQQQQQQLQHPFSSSYQAPVV 653
Q L Q Q T Q P + Q P+
Sbjct: 645 QQSQTQLQPLQQQPQQVQQQYQGQQLQQPFYSSLYPTPGASHNTQYPSLPVGQNSQFPMS 704
Query: 654 RGQHNAQELGYTQLPPVAAGSVNNPTRFQQGLQAAQDWMWKNK 696
NAQ+ T + PV A S+N+ +R QQ Q+ Q+ MWKNK
Sbjct: 705 GIGQNAQDYARTHI-PVGAASMNDISRTQQSRQSPQELMWKNK 746
>gi|2204095|emb|CAB05391.1| FCA gamma [Arabidopsis thaliana]
Length = 747
Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust.
Identities = 366/703 (52%), Positives = 438/703 (62%), Gaps = 66/703 (9%)
Query: 20 PQSLPVPQ-LSGQKRGF--SGRGG-PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEH 75
P + PV Q LSGQKRG+ S G D+ D SS KLFVGSVP+TA EE+IRP FE+H
Sbjct: 84 PTTPPVQQPLSGQKRGYPISDHGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQH 143
Query: 76 GNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGER 135
GNV+EVALIKDK+TGQQQGCCF+KYATS++ADRAIRALHNQ TLPGG GP+QVRYADGER
Sbjct: 144 GNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGER 203
Query: 136 ERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDM 195
ER+G +E+KLFVGSLNKQATEKEVEEIF +G VEDVYLMRDE +QSRGCGFVKYS ++
Sbjct: 204 ERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKET 263
Query: 196 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGPRFQPPSPRPPP 255
A+AAI+ LNG YTMRGC+QPL VRFA+PKRP+PG+SR G G GPRFQ PRP
Sbjct: 264 AMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGESREMAPPVGLGSGPRFQASGPRPTS 323
Query: 256 NFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNPGGP------ 309
NFGD D N W P + RN+GP SN GIRG G+ PP+ G +P N GGP
Sbjct: 324 NFGDSSGDVSHTNPWRPATSRNVGPPSNTGIRGAGSDFPPKPGQATLPSNQGGPLGGYGV 383
Query: 310 -ADVPLPGLAVSSTSSALQQNFCQPESQAPSLGQQISPLQKPLQSPQHMPPLQLHPQVPS 368
PLP VSS+++ QQN + GQ I+PL+KPL SPQ + PL L PQ
Sbjct: 384 PPLNPLPVPGVSSSATLQQQNR--------AAGQHITPLKKPLHSPQGL-PLPLRPQT-- 432
Query: 369 SYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQGQQIASSSTALPTPLNI 428
PG +QA P Q+ S LP SQ QQ S +TA TPLNI
Sbjct: 433 -------------NFPG----AQA-PLQNPYAYSSQLPTSQLPPQQNISRATAPQTPLNI 474
Query: 429 KPQSSSLPGGTNQQQLPAPVQQQLHQPYQQSPSQLAQMLSQQTQTLQATFQSSQQAFSQL 488
+ +++ T Q P QQQ Q Q PS+LAQ+LSQQTQ+LQATFQSSQQA SQL
Sbjct: 475 NLRPTTVSSAT--VQFPPRSQQQPLQKMQHPPSELAQLLSQQTQSLQATFQSSQQAISQL 532
Query: 489 QQQLQLMQPSNQNLPLQQGSQGTKQQSQWAGIAPQTVASAPASAPAADLPVSTSIGPAAP 548
QQQ+Q MQ NQNLPL Q + KQ QWAG A VAS S P + + AAP
Sbjct: 533 QQQVQSMQQPNQNLPLSQNGRAGKQ--QWAGSAIPRVASTTGSTPV------SYVQTAAP 584
Query: 549 VSSQTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQQQQQQKPPVQQPPS 608
SQ+V K +WTEHTSPDG+KYYYN +TG SKWEKPEE+ +FE++QQ+Q+ ++P
Sbjct: 585 AVSQSVGSVKCTWTEHTSPDGFKYYYNGLTGESKWEKPEEMIVFEREQQKQQQHQEKPTI 644
Query: 609 QLHSQVLPAQHIPQTQQVQLQ---------------TQLRQQQQQQLQHPFSSSYQAPVV 653
Q L Q Q T Q P + Q P+
Sbjct: 645 QQSQTQLQPLQQQPQQVQQQYQGQQLQQPFYSSLYPTPGASHNTQYPSLPVGQNSQFPMS 704
Query: 654 RGQHNAQELGYTQLPPVAAGSVNNPTRFQQGLQAAQDWMWKNK 696
NAQ+ T + PV A S+N+ +R Q Q+ Q+ MWKNK
Sbjct: 705 GIGQNAQDYARTHI-PVGAASMNDISRTPQSRQSPQELMWKNK 746
>gi|224112006|ref|XP_002316051.1| predicted protein [Populus trichocarpa]
gi|222865091|gb|EEF02222.1| predicted protein [Populus trichocarpa]
Length = 343
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 251/334 (75%), Positives = 262/334 (78%), Gaps = 36/334 (10%)
Query: 5 FRPMSGPRSGM--NY--PLPQSLPVPQLSGQKRGFSGRGGPSP----------------- 43
FRPM G G NY P P SLP +SG+KRGF G SP
Sbjct: 12 FRPMGGAGGGFVPNYQVPPPLSLPPQNISGRKRGFHGS---SPGKLNYVFLLSFLVQMLM 68
Query: 44 -----DLVDGS------SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQ 92
D DG +FAKLFVGSVP+TA E DIRPLFEEHGNVIEVALIKDK+TGQQ
Sbjct: 69 NLYFADRFDGGGGRSGFAFAKLFVGSVPRTATEMDIRPLFEEHGNVIEVALIKDKRTGQQ 128
Query: 93 QGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNK 152
QGCCFIKYATSEEADRAIRALHNQ TLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNK
Sbjct: 129 QGCCFIKYATSEEADRAIRALHNQRTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNK 188
Query: 153 QATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGC 212
QATEKEVEEIF+PYGRVEDVYLMRDE+KQSRGCGFVKYSHRDMALAAIN LNGIYTMRGC
Sbjct: 189 QATEKEVEEIFTPYGRVEDVYLMRDEMKQSRGCGFVKYSHRDMALAAINGLNGIYTMRGC 248
Query: 213 DQPLTVRFADPKRPRP-GDSRSGPTFGGPGFGPRFQPPSPRPPPNFGDPITDQIPQNAWH 271
+QPLTVRFADPKRPRP GDSR GP FG PG GPRFQ RPPPN GDP+ D IP NAW
Sbjct: 249 EQPLTVRFADPKRPRPGGDSRGGPAFGSPGAGPRFQASGLRPPPNLGDPMGDHIPPNAWL 308
Query: 272 PMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLN 305
PMSP+NMGP SN G+ GFGNQLPPRSGDL MPLN
Sbjct: 309 PMSPQNMGPSSNAGVHGFGNQLPPRSGDLAMPLN 342
>gi|2204096|emb|CAB05392.1| FCA delta [Arabidopsis thaliana]
gi|5302786|emb|CAB46035.1| FCA delta protein [Arabidopsis thaliana]
gi|7268378|emb|CAB78671.1| FCA delta protein [Arabidopsis thaliana]
Length = 533
Score = 466 bits (1200), Expect = e-128, Method: Compositional matrix adjust.
Identities = 278/481 (57%), Positives = 325/481 (67%), Gaps = 42/481 (8%)
Query: 20 PQSLPVPQ-LSGQKRGF--SGRGG-PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEH 75
P + PV Q LSGQKRG+ S G D+ D SS KLFVGSVP+TA EE+IRP FE+H
Sbjct: 84 PTTPPVQQPLSGQKRGYPISDHGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQH 143
Query: 76 GNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGER 135
GNV+EVALIKDK+TGQQQGCCF+KYATS++ADRAIRALHNQ TLPGG GP+QVRYADGER
Sbjct: 144 GNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGER 203
Query: 136 ERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDM 195
ER+G +E+KLFVGSLNKQATEKEVEEIF +G VEDVYLMRDE +QSRGCGFVKYS ++
Sbjct: 204 ERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKET 263
Query: 196 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGPRFQPPSPRPPP 255
A+AAI+ LNG YTMRGC+QPL VRFA+PKRP+PG+SR G G GPRFQ PRP
Sbjct: 264 AMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGESREMAPPVGLGSGPRFQASGPRPTS 323
Query: 256 NFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNPGGP------ 309
NFGD D N W P + RN+GP SN GIRG G+ PP+ G +P N GGP
Sbjct: 324 NFGDSSGDVSHTNPWRPATSRNVGPPSNTGIRGAGSDFPPKPGQATLPSNQGGPLGGYGV 383
Query: 310 -ADVPLPGLAVSSTSSALQQNFCQPESQAPSLGQQISPLQKPLQSPQHMPPLQLHPQVPS 368
PLP VSS+++ QQN + GQ I+PL+KPL SPQ + PL L PQ
Sbjct: 384 PPLNPLPVPGVSSSATLQQQNR--------AAGQHITPLKKPLHSPQGL-PLPLRPQT-- 432
Query: 369 SYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQGQQIASSSTALPTPLNI 428
PG +QA P Q+ S LP SQ QQ S +TA TPLNI
Sbjct: 433 -------------NFPG----AQA-PLQNPYAYSSQLPTSQLPPQQNISRATAPQTPLNI 474
Query: 429 KPQSSSLPGGTNQQQLPAPVQQQLHQPYQQSPSQLAQMLSQQTQTLQATFQSSQQAFSQL 488
+ +++ T Q P QQQ Q Q PS+LAQ+LSQQTQ+LQATFQSSQQA SQL
Sbjct: 475 NLRPTTVSSAT--VQFPPRSQQQPLQKMQHPPSELAQLLSQQTQSLQATFQSSQQAISQL 532
Query: 489 Q 489
Q
Sbjct: 533 Q 533
>gi|186511881|ref|NP_193363.4| RNA binding / abscisic acid binding protein [Arabidopsis thaliana]
gi|332658326|gb|AEE83726.1| RNA binding / abscisic acid binding protein [Arabidopsis thaliana]
Length = 533
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 277/481 (57%), Positives = 324/481 (67%), Gaps = 42/481 (8%)
Query: 20 PQSLPVPQ-LSGQKRGF--SGRGG-PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEH 75
P + PV Q LSGQKRG+ S G D+ D SS KLFVGSVP+TA EE+IRP FE+H
Sbjct: 84 PTTPPVQQPLSGQKRGYPISDHGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQH 143
Query: 76 GNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGER 135
GNV+EVALIKDK+TGQQQGCCF+KYATS++ADRAIRALHNQ TLPGG GP+QVRYADGER
Sbjct: 144 GNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGER 203
Query: 136 ERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDM 195
ER+G +E+KLFVGSLNKQATEKEVEEIF +G VEDVYLMRDE +QSRGCGFVKYS ++
Sbjct: 204 ERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKET 263
Query: 196 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGPRFQPPSPRPPP 255
A+AAI+ LNG YTMRGC+QPL VRFA+PKRP+PG+SR G G GPRFQ PRP
Sbjct: 264 AMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGESREMAPPVGLGSGPRFQASGPRPTS 323
Query: 256 NFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNPGGP------ 309
NFGD D N W P + RN+GP SN GIRG G+ P+ G +P N GGP
Sbjct: 324 NFGDSSGDVSHTNPWRPATSRNVGPPSNTGIRGAGSDFSPKPGQATLPSNQGGPLGGYGV 383
Query: 310 -ADVPLPGLAVSSTSSALQQNFCQPESQAPSLGQQISPLQKPLQSPQHMPPLQLHPQVPS 368
PLP VSS+++ QQN + GQ I+PL+KPL SPQ + PL L PQ
Sbjct: 384 PPLNPLPVPGVSSSATLQQQNR--------AAGQHITPLKKPLHSPQGL-PLPLRPQT-- 432
Query: 369 SYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQGQQIASSSTALPTPLNI 428
PG +QA P Q+ S LP SQ QQ S +TA TPLNI
Sbjct: 433 -------------NFPG----AQA-PLQNPYAYSSQLPTSQLPPQQNISRATAPQTPLNI 474
Query: 429 KPQSSSLPGGTNQQQLPAPVQQQLHQPYQQSPSQLAQMLSQQTQTLQATFQSSQQAFSQL 488
+ +++ T Q P QQQ Q Q PS+LAQ+LSQQTQ+LQATFQSSQQA SQL
Sbjct: 475 NLRPTTVSSAT--VQFPPRSQQQPLQKMQHPPSELAQLLSQQTQSLQATFQSSQQAISQL 532
Query: 489 Q 489
Q
Sbjct: 533 Q 533
>gi|2204091|emb|CAB05389.1| FCA delta [Arabidopsis thaliana]
Length = 533
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 277/481 (57%), Positives = 324/481 (67%), Gaps = 42/481 (8%)
Query: 20 PQSLPVPQ-LSGQKRGF--SGRGG-PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEH 75
P + PV Q LSGQKRG+ S G D+ D SS KLFVGSVP+TA EE+IRP FE+H
Sbjct: 84 PTTPPVQQPLSGQKRGYPISDHGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQH 143
Query: 76 GNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGER 135
GNV+EVALIKDK+TGQQQGCCF+KYATS++ADRAIRALHNQ TLPGG GP+QVRYADGER
Sbjct: 144 GNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGER 203
Query: 136 ERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDM 195
ER+G +E+KLFVGSLNKQATEKEVEEIF +G VEDVYLMRDE +QSRGCGFVKYS ++
Sbjct: 204 ERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKET 263
Query: 196 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGPRFQPPSPRPPP 255
A+AAI+ LNG YTMRGC+QPL VRFA+PKRP+PG+SR G G GPRFQ PRP
Sbjct: 264 AMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGESRDMAPPVGLGSGPRFQASGPRPTS 323
Query: 256 NFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNPGGP------ 309
NFGD D N W P + RN+GP SN GIRG G+ P+ G +P N GGP
Sbjct: 324 NFGDSSGDVSHTNPWRPATSRNVGPPSNTGIRGAGSDFSPKPGQATLPSNQGGPLGGYGV 383
Query: 310 -ADVPLPGLAVSSTSSALQQNFCQPESQAPSLGQQISPLQKPLQSPQHMPPLQLHPQVPS 368
PLP VSS+++ QQN + GQ I+PL+KPL SPQ + PL L PQ
Sbjct: 384 PPLNPLPVPGVSSSATLQQQNR--------AAGQHITPLKKPLHSPQGL-PLPLRPQT-- 432
Query: 369 SYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQGQQIASSSTALPTPLNI 428
PG +QA P Q+ S LP SQ QQ S +TA TPLNI
Sbjct: 433 -------------NFPG----AQA-PLQNPYAYSSQLPTSQLPPQQNISRATAPQTPLNI 474
Query: 429 KPQSSSLPGGTNQQQLPAPVQQQLHQPYQQSPSQLAQMLSQQTQTLQATFQSSQQAFSQL 488
+ +++ T Q P QQQ Q Q PS+LAQ+LSQQTQ+LQATFQSSQQA SQL
Sbjct: 475 NLRPTTVSSAT--VQFPPRSQQQPLQKMQHPPSELAQLLSQQTQSLQATFQSSQQAISQL 532
Query: 489 Q 489
Q
Sbjct: 533 Q 533
>gi|32482383|gb|AAP84381.1| FCA protein [Triticum aestivum]
Length = 737
Score = 450 bits (1158), Expect = e-123, Method: Compositional matrix adjust.
Identities = 309/694 (44%), Positives = 394/694 (56%), Gaps = 110/694 (15%)
Query: 44 DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATS 103
D + S + KLFVGSVP+TA E+D+RPLFE+HG+V+EVALI+D+KTG+QQGCCF+KYATS
Sbjct: 112 DHDNKSGYVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATS 171
Query: 104 EEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIF 163
EEA+RAIRALHNQ T+PG +GP+QVRYADGE+ER G++E+KLFV SLNKQAT KE+ EIF
Sbjct: 172 EEAERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIGEIF 231
Query: 164 SPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223
+P+G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA N+L+G Y MRGC+QPL VRFADP
Sbjct: 232 APFGHVEDVYIMKDGMRQSRGCGFVKFSSKEPALAATNSLSGTYIMRGCEQPLIVRFADP 291
Query: 224 KRPRPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLS 282
KRPRPG+SR GP FGGPG R RP N + I +P ++W P SP +M P
Sbjct: 292 KRPRPGESRGGPAFGGPGVSSRSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ 351
Query: 283 NPGIRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQA--PSL 340
FG+ G +G + P + + S + Q P PSL
Sbjct: 352 ---FNNFGSD--NSMGLMGGSVTSAADNVTFRPQMFHGNGSLSSQTAVPTPSHMGINPSL 406
Query: 341 GQ-------QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQAL 393
Q Q SPLQKP PQ+ P+QL + Q L Q G SF Q +
Sbjct: 407 SQGHHLGGPQTSPLQKPTGQPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNI 457
Query: 394 PSQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQL 452
P+ L G LP QP QQ AS+ AL P + QS+ + QQQLP+ V Q L
Sbjct: 458 PTMQL---PGQLPVPQPLTQQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQML 511
Query: 453 HQPYQQSPSQLAQMLSQQTQ-TLQATFQSSQQAF-------------SQLQQQLQLMQPS 498
QP QQ SQ Q+L +Q Q +Q+++QSS+Q Q QQQ L Q
Sbjct: 512 QQPVQQMLSQAPQLLLRQQQAAIQSSYQSSRQTIFQLQQQLQLLQQQQQHQQQPNLNQQP 571
Query: 499 NQNLPLQQGSQGTKQQSQWAGIAPQTVASAPASAPAADLPVSTSIGPAAPVSSQTVAPAK 558
+ +P QQG Q V S APAA + + P Q +PA
Sbjct: 572 HTQVPKQQG---------------QPVQSNTPGAPAAMMTTKINAIP-----QQVNSPAV 611
Query: 559 S---SWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQQQQ----------QQKPPVQQ 605
S +WTEHTSP+G+KYYYN +T SKWEKPEE L+EQQQQ QQK QQ
Sbjct: 612 SLTCNWTEHTSPEGFKYYYNSITRESKWEKPEEYILYEQQQQHQKLILLQQHQQKLVAQQ 671
Query: 606 PPSQLHSQVLP----AQHIPQTQQVQLQTQLRQQQQQQLQHPFSSSYQAPVVRGQHNAQE 661
S +Q +P QH PQ+QQ Q Q++Q Q+
Sbjct: 672 LQSPPQAQTIPPMQSMQHHPQSQQGHNQMQMKQ-------------------------QD 706
Query: 662 LGYTQLPPVAAGSVNNPTRFQQGLQAAQDWMWKN 695
L Y QL A G++ +P+R QQG+QAAQ+ WK+
Sbjct: 707 LNYNQLQ--ATGTI-DPSRIQQGIQAAQERSWKS 737
>gi|297800520|ref|XP_002868144.1| hypothetical protein ARALYDRAFT_493257 [Arabidopsis lyrata subsp.
lyrata]
gi|297313980|gb|EFH44403.1| hypothetical protein ARALYDRAFT_493257 [Arabidopsis lyrata subsp.
lyrata]
Length = 547
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 262/470 (55%), Positives = 310/470 (65%), Gaps = 46/470 (9%)
Query: 20 PQSLPVPQ-LSGQKRGF--SGRGGPS-PDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEH 75
P + PV Q LSGQKRG+ S G + D+ D SS KLFVGSVP+TA EE++RP FE+H
Sbjct: 91 PTTPPVQQPLSGQKRGYPSSDHGSYTGADVSDHSSTVKLFVGSVPRTAIEEEVRPFFEKH 150
Query: 76 GNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGER 135
GNV+EVALIKDK+TGQQQGCCF+KYATS++ADRAIRALHNQ TLPGG GP+QVRYADGER
Sbjct: 151 GNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGER 210
Query: 136 ERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDM 195
ER+G +E+KLFVGSLNKQATEKEVEEIF +GRVEDVYLMRDE +QSRGCGFVKYS ++
Sbjct: 211 ERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGRVEDVYLMRDEYRQSRGCGFVKYSSKET 270
Query: 196 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGPRFQPPSPRPPP 255
A+AAI+ LNG YTMRGC+QPL VRFADPKRP+PG+SR G G GPRFQ RP
Sbjct: 271 AMAAIDGLNGTYTMRGCNQPLIVRFADPKRPKPGESRDMTAPVGLGSGPRFQVSGQRPTS 330
Query: 256 NFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNPGG------- 308
NFGD D N W P + +N+GP SN GIRG G PR G +P N GG
Sbjct: 331 NFGDSSGDVSHTNPWRPANSQNVGPPSNTGIRGAGTDFSPRPGQATLPSNQGGLFGGYGV 390
Query: 309 PADVPLPGLAVSSTSSALQQNFCQPESQAPSLGQQISPLQKPLQSPQHMPPLQLHPQVPS 368
P PLP VSS++ QQN + GQQISPL+KPL SPQ +P L P P
Sbjct: 391 PPLNPLPVSGVSSSAKLQQQNR--------AAGQQISPLKKPLHSPQGLP---LRPHFPG 439
Query: 369 SYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQGQQIASSSTALPTPLNI 428
+ + QN + S LP+SQ QQ + +TA TPLNI
Sbjct: 440 AQAPLQNPYT----------------------YSSQLPSSQLPPQQNVTRATAPQTPLNI 477
Query: 429 KPQSSSLPGGTNQQQLPAPVQQQLHQPYQQSPSQLAQMLSQQTQTLQATF 478
+ + + T+ Q P QQQ Q Q PS+LAQ+LSQQTQ+LQAT
Sbjct: 478 NLRPTHVSSATD--QFPPRSQQQPLQRMQHPPSELAQLLSQQTQSLQATL 525
>gi|32482110|gb|AAP84407.1| FCA protein [Triticum aestivum]
Length = 736
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 314/702 (44%), Positives = 398/702 (56%), Gaps = 125/702 (17%)
Query: 44 DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATS 103
D + S + KLFVGSVP+TA E+D+RPLFE+HG+V+EVALI+D+KTG+QQGCCF+KYATS
Sbjct: 110 DHDNKSGYVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATS 169
Query: 104 EEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIF 163
EEA+RAIRALHNQ T+PG +GP+QVRYADGE+ER G++E+KLFV SLNKQAT KE+EEIF
Sbjct: 170 EEAERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIF 229
Query: 164 SPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223
+P+G VEDVY+M+D ++QSRGCGFVK+S ++ AL A+N+L+G Y MRGC+QPL V+FADP
Sbjct: 230 APFGHVEDVYIMKDGMRQSRGCGFVKFSSKEPALVAMNSLSGTYIMRGCEQPLIVQFADP 289
Query: 224 KRPRPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLS 282
KRPRPG+SR GP FGGPG R RP N + I +P ++W P SP +M P
Sbjct: 290 KRPRPGESRGGPAFGGPGVSSRSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAP-- 347
Query: 283 NPGIRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLA----VSSTSSALQQNFCQPESQ-- 336
F N P S L GGPA + + + +L P S
Sbjct: 348 ----HQFNNFGPDNSMGLM-----GGPATSTADNVTFRPQMFHGNGSLSSQTAVPTSSHM 398
Query: 337 --APSLGQ-------QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQT 387
PSL Q QISPLQKP PQ+ P+QL + Q L Q G
Sbjct: 399 GINPSLSQGHHLGGPQISPLQKPTGPPQNF-PVQLQ--------NAQQGQLHASQSLGPG 449
Query: 388 SFSQALPSQHLLGMSGNLPASQPQGQQIASS-STALPTPLNIKPQSSSLPGGTNQQQLPA 446
SF Q +P+ L G LP SQP QQ AS+ + P+ ++ P ++PG QQQLP+
Sbjct: 450 SFGQNIPTMQL---PGQLPVSQPLTQQNASAGALQAPSAVHSNPM-QAVPG---QQQLPS 502
Query: 447 PVQ-QQLHQPYQQSPSQLAQMLSQQTQTLQAT-FQSSQQAF--------------SQLQQ 490
V Q L QP QQ SQ Q+L QQ Q + +QSSQQ Q QQ
Sbjct: 503 NVAPQMLQQPVQQMLSQAPQLLLQQQQAAIQSGYQSSQQTIFQLQQQLQLLQQQQQQHQQ 562
Query: 491 QLQLMQPSNQNLPLQQGSQGTKQQSQWAGIAPQTVASAPASAPAADLPVSTSIGPAAPVS 550
Q L Q + +P QQG Q V S APAA + T+ P
Sbjct: 563 QPNLNQQPHTQVPKQQG---------------QPVQSNTPGAPAAMMTTKTNAIP----- 602
Query: 551 SQTVAPAKS---SWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQ----------QQQ 597
Q +PA S +WTEHTSP+G+KYYYN +T SKWEKPEE L+EQ QQ
Sbjct: 603 QQVNSPAVSLTCNWTEHTSPEGFKYYYNSITRESKWEKPEEYILYEQQQHHQKLILLQQH 662
Query: 598 QQKPPVQQPPSQLHSQVLP----AQHIPQTQQVQLQTQLRQQQQQQLQHPFSSSYQAPVV 653
QQK QQ S +Q +P QH PQ+QQ Q Q++Q
Sbjct: 663 QQKLVAQQLQSPPQAQTIPPVQSMQHHPQSQQGHNQMQMKQ------------------- 703
Query: 654 RGQHNAQELGYTQLPPVAAGSVNNPTRFQQGLQAAQDWMWKN 695
Q+L Y QL A G++ +P+R QQG+QAAQ+ WK+
Sbjct: 704 ------QDLNYNQLQ--ATGTI-DPSRIQQGIQAAQERSWKS 736
>gi|32482106|gb|AAP84405.1| FCA protein [Triticum aestivum]
Length = 735
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 306/681 (44%), Positives = 386/681 (56%), Gaps = 90/681 (13%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+ S + KLFVGSVP+TA E+D+RPLFE+HG+V+EVALI+D+KTG+QQGCCF+KYATSEEA
Sbjct: 113 NKSGYVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEA 172
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
+RAIRALHNQ T+PG +GP+QVRYADGE+ER G++E+KLFV SLNKQAT KE+EEIF+P+
Sbjct: 173 ERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPF 232
Query: 167 GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADP+RP
Sbjct: 233 GHVEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPRRP 292
Query: 227 RPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPG 285
RPG+SR GP FGGPG R RP N + I +P ++W P SP +M P
Sbjct: 293 RPGESRGGPAFGGPGVSSRSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ--- 349
Query: 286 IRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLG 341
FG+ G +G P+ P + + S L P S PSL
Sbjct: 350 FNNFGSD--NSMGLMGGPVTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLS 405
Query: 342 Q-------QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALP 394
Q QISPLQKP PQ+ P+QL + Q L Q G SF Q +P
Sbjct: 406 QGHHLGGPQISPLQKPTGQPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIP 456
Query: 395 SQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLH 453
+ L G LP SQP QQ AS+ AL P + QS+ + QQQLP+ V Q L
Sbjct: 457 TMQL---PGQLPVSQPLTQQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQ 510
Query: 454 QPYQQSPSQL--AQMLSQQTQTLQATFQSSQQAFSQLQQQLQLMQPSNQNLPLQQGSQGT 511
QP QQ SQ + QQT + S Q F QQ L Q Q
Sbjct: 511 QPVQQMLSQAPQLLLQQQQTAIQSSYQSSQQTIFQLQQQLQLLQQQQQHQQQPNLNQQPH 570
Query: 512 KQQSQWAGIAPQTVASAPASAPAADLPVSTSIGPAAPVSSQTVAPAKS---SWTEHTSPD 568
Q + G Q V S APAA + + P Q +PA S +WTEHTSP+
Sbjct: 571 TQVPKQQG---QPVQSNTPGAPAAMMTTKINAIP-----QQVNSPAVSLTCNWTEHTSPE 622
Query: 569 GYKYYYNCVTGVSKWEKPEELTLFEQQQQ----------QQKPPVQQPPSQLHSQVLP-- 616
G+KYYYN +T SKWEKPEE L+EQQQQ QQK QQ S +Q +P
Sbjct: 623 GFKYYYNSITRESKWEKPEEYILYEQQQQHQKLILLQQHQQKLVAQQLQSPPQAQTIPPM 682
Query: 617 --AQHIPQTQQVQLQTQLRQQQQQQLQHPFSSSYQAPVVRGQHNAQELGYTQLPPVAAGS 674
QH PQ+QQ Q Q++Q Q+L Y QL A G+
Sbjct: 683 QSMQHHPQSQQGHNQMQMKQ-------------------------QDLNYNQLQ--ATGT 715
Query: 675 VNNPTRFQQGLQAAQDWMWKN 695
+ +P+R QQG+QAAQ+ WK+
Sbjct: 716 I-DPSRIQQGIQAAQERSWKS 735
>gi|32482065|gb|AAP84389.1| FCA protein [Triticum aestivum]
Length = 739
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 310/678 (45%), Positives = 390/678 (57%), Gaps = 85/678 (12%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+ S + KLFVGSVP+TA E+D+RPLFE+HG+V+EVALI+D+KTG+QQGCCF+KYATSEEA
Sbjct: 118 NKSGYVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEA 177
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
+RAIRALHNQ T+PG +GP+QVRYADGE+ER G++E+KLFV SLNKQAT KE+EEIF+P+
Sbjct: 178 ERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPF 237
Query: 167 GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRP
Sbjct: 238 GHVEDVYVMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRP 297
Query: 227 RPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPG 285
RPG+SR GP FGGPG R RP N + I +P ++W P SP +M P
Sbjct: 298 RPGESRGGPAFGGPGVSSRSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ--- 354
Query: 286 IRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLG 341
FG+ G +G P+ P + + S L P S PSL
Sbjct: 355 FNNFGSD--NSMGLMGGPVTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLS 410
Query: 342 Q-------QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALP 394
Q QISPLQKP PQ+ P+QL + Q L Q G SF Q +P
Sbjct: 411 QGHHLGGPQISPLQKPTGQPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIP 461
Query: 395 SQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLH 453
+ L G LP SQP QQ AS+ AL P + QS+ + QQQLP+ V Q L
Sbjct: 462 TMQL---PGQLPVSQPLTQQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQ 515
Query: 454 QPYQQ---------SPSQLAQMLSQQTQTLQATFQSSQQAFSQLQQQLQLMQPSNQNLPL 504
QP QQ Q A + S + Q FQ QQ QQQ QPS L
Sbjct: 516 QPVQQMLSQAPQLLLQQQQAAIQSSYQSSQQTIFQLQQQLQLLQQQQQHQQQPS---LNQ 572
Query: 505 QQGSQGTKQQSQWAGIAPQTVASAPASAPAADLPVSTSIGPAAPVSSQTVAPAKS---SW 561
Q +Q KQQ Q V S APAA + + P Q +PA S +W
Sbjct: 573 QPHTQVPKQQG-------QPVQSNTPGAPAAMMTTKINAIP-----QQVNSPAVSLTCNW 620
Query: 562 TEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQQQQQQKPPVQQPPSQLHSQVL----PA 617
TEHTSP+G+KYYYN +T SKWEKPEE L+EQQQ Q+ +QQ +L +Q L A
Sbjct: 621 TEHTSPEGFKYYYNSITRESKWEKPEEYILYEQQQHQKLILLQQHQQKLVAQQLQSPPQA 680
Query: 618 QHIPQTQQVQLQTQLRQQQQQQLQHPFSSSYQAPVVRGQHNAQELGYTQLPPVAAGSVNN 677
Q IP Q +Q Q +Q Q Q Q+L Y QL A G++ +
Sbjct: 681 QTIPPMQSMQHHPQSQQGHNQM----------------QMKQQDLNYNQLQ--ATGTI-D 721
Query: 678 PTRFQQGLQAAQDWMWKN 695
P+R QQG+QAAQ+ WK+
Sbjct: 722 PSRIQQGIQAAQERSWKS 739
>gi|32482059|gb|AAP84387.1| FCA protein [Triticum aestivum]
Length = 728
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 308/684 (45%), Positives = 386/684 (56%), Gaps = 90/684 (13%)
Query: 44 DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATS 103
D + S + KLFVGSVP+TA E+D+RPLFE+HG+V+EVALI+D+KTG+QQGCCF+KYATS
Sbjct: 103 DHDNKSGYVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATS 162
Query: 104 EEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIF 163
EEA+RAIRALHNQ TLPG +GP+QVRYADGE+ER G++E+ LFV SLNKQAT KE+EEIF
Sbjct: 163 EEAERAIRALHNQCTLPGAMGPVQVRYADGEKERHGSIEHILFVASLNKQATAKEIEEIF 222
Query: 164 SPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223
+P+G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADP
Sbjct: 223 APFGHVEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADP 282
Query: 224 KRPRPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLS 282
KRPRPG+SR GP FGGPG R RP N + I +P ++W P SP +M P
Sbjct: 283 KRPRPGESRGGPAFGGPGVSSRSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ 342
Query: 283 NPGIRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----AP 338
FG+ G +G P+ P + + S L P S P
Sbjct: 343 ---FNNFGSD--NSMGLMGGPVTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINP 395
Query: 339 SLGQ-------QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQ 391
SL Q QISPLQKP PQ+ P+QL + Q L Q G SF Q
Sbjct: 396 SLSQGHHLGGPQISPLQKPTGQPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQ 446
Query: 392 ALPSQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-Q 450
+P+ L G LP SQP QQ AS+ AL P + QS+ + QQQLP+ V Q
Sbjct: 447 NIPTMQL---PGQLPVSQPLTQQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQ 500
Query: 451 QLHQPYQQSPSQL--AQMLSQQTQTLQATFQSSQQAFSQLQQQLQLMQPSNQNLPLQQGS 508
L QP QQ SQ + QQT + S Q F QQ L Q
Sbjct: 501 MLQQPVQQMLSQAPQLLLQQQQTAIQSSYQSSQQTIFQLQQQLQLLQQQQQHQQQPNLNQ 560
Query: 509 QGTKQQSQWAGIAPQTVASAPASAPAADLPVSTSIGPAAPVSSQTVAPAKS---SWTEHT 565
Q Q + G Q V S APAA + + P Q +PA S +WTEHT
Sbjct: 561 QPHTQVPKQQG---QPVQSNTPGAPAAMMTTKINAIP-----QQVNSPAVSLTCNWTEHT 612
Query: 566 SPDGYKYYYNCVTGVSKWEKPEELTLFEQQQQ----------QQKPPVQQPPSQLHSQVL 615
SP+G+KYYYN +T SKWEKPEE L+EQQQQ QQK QQ S +Q +
Sbjct: 613 SPEGFKYYYNSITRESKWEKPEEYILYEQQQQHQKLILLQQHQQKLVAQQLQSPPQAQTI 672
Query: 616 P----AQHIPQTQQVQLQTQLRQQQQQQLQHPFSSSYQAPVVRGQHNAQELGYTQLPPVA 671
P QH PQ+QQ Q Q++Q Q+L Y QL A
Sbjct: 673 PPMQSMQHHPQSQQGHNQMQMKQ-------------------------QDLNYNQLQ--A 705
Query: 672 AGSVNNPTRFQQGLQAAQDWMWKN 695
G++ +P+R QQG+QAAQ+ WK+
Sbjct: 706 TGTI-DPSRIQQGIQAAQERSWKS 728
>gi|32482123|gb|AAP84412.1| FCA protein, partial [Triticum aestivum]
Length = 737
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 305/690 (44%), Positives = 381/690 (55%), Gaps = 108/690 (15%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+ S + KLFVGSVP+TA E+D+RPLFE+HG+V+EVALI+D+KTG+QQGCCF+KYATSEEA
Sbjct: 115 NKSGYVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEA 174
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
+RAIRALHNQ T+PG +GP+QVRYADGE+ER G++E+KLFV SLNKQAT KE+EEIF+P+
Sbjct: 175 ERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPF 234
Query: 167 GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRP
Sbjct: 235 GHVEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRP 294
Query: 227 RPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPG 285
RPG+SR GP FGGPG R RP N + I +P ++W P SP +M P
Sbjct: 295 RPGESRGGPAFGGPGVSSRSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ--- 351
Query: 286 IRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLG 341
FG+ G +G P+ P + + S L P S PSL
Sbjct: 352 FNNFGSD--NSMGLMGGPVTSAADNVTFRPQMFHGNGS--LTSQTAVPTSSHMGINPSLS 407
Query: 342 Q-------QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALP 394
Q QISPLQKP PQ+ P+QL + Q L Q G SF Q +P
Sbjct: 408 QGHHLGGPQISPLQKPTGQPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIP 458
Query: 395 SQHLLGMSGNLPASQPQGQQIASS------STALPTPLNIKPQSSSLPGGTNQQQLPAPV 448
+ L G LP SQP QQ AS+ S P+ P LP Q L PV
Sbjct: 459 TMQL---PGQLPVSQPLTQQNASAGALQALSAVQSNPMQAVPGQQQLPSNVTPQMLQQPV 515
Query: 449 QQQLHQPYQQSPSQLAQMLSQQTQTLQATF------QSSQQAFSQLQQQLQLMQPSNQNL 502
QQ L Q Q Q + Q+ Q T Q Q QQQ L Q + +
Sbjct: 516 QQMLSQAPQLLLQQQQAAIQSSYQSSQQTIFQLQQQLQLLQQQQQHQQQPNLNQQPHTQV 575
Query: 503 PLQQGSQGTKQQSQWAGIAPQTVASAPASAPAADLPVSTSIGPAAPVSSQTVAPAKSS-- 560
P QQG Q V S APAA + + P Q +PA SS
Sbjct: 576 PKQQG---------------QPVQSNTPGAPAAMMTTKINAIP-----QQVNSPAVSSTC 615
Query: 561 -WTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQQQQ----------QQKPPVQQPPSQ 609
WTEHTSP+G+KYYYN +T SKWEKPEE L+EQQQQ QQK QQ S
Sbjct: 616 NWTEHTSPEGFKYYYNSITRESKWEKPEEYILYEQQQQHQKLILLQQHQQKLVAQQLQSP 675
Query: 610 LHSQVLP----AQHIPQTQQVQLQTQLRQQQQQQLQHPFSSSYQAPVVRGQHNAQELGYT 665
+Q +P QH PQ+QQ Q Q++Q Q+L Y
Sbjct: 676 PQAQTIPPMQSMQHHPQSQQGHNQMQMKQ-------------------------QDLNYN 710
Query: 666 QLPPVAAGSVNNPTRFQQGLQAAQDWMWKN 695
QL A G++ +P+R QQG+QAAQ+ WK+
Sbjct: 711 QLQ--ATGTI-DPSRIQQGIQAAQERSWKS 737
>gi|32482147|gb|AAP84419.1| FCA-B2 [Triticum aestivum]
Length = 740
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 308/687 (44%), Positives = 392/687 (57%), Gaps = 95/687 (13%)
Query: 44 DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATS 103
D + S + KLFVGSVP+TA E+D+RPLFE+HG+V+EVALI+D+KTG+QQGCCF+KYATS
Sbjct: 114 DHDNKSGYVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATS 173
Query: 104 EEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIF 163
EEA+RAIRALHNQ T+PG +GP+QVRYADGE+ER G++E+KLFV SLNKQAT KE+EEIF
Sbjct: 174 EEAERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIF 233
Query: 164 SPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223
+P+G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADP
Sbjct: 234 APFGHVEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADP 293
Query: 224 KRPRPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLS 282
KRPRPG+SR GP FGGPG R RP N + I +P ++W P SP +M P
Sbjct: 294 KRPRPGESRGGPAFGGPGVSSRSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAP-- 351
Query: 283 NPGIRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLA----VSSTSSALQQNFCQPESQ-- 336
F N P S L GGPA + + + +L P S
Sbjct: 352 ----HQFNNFGPDNSMGLM-----GGPATSTADNVTFRPQMFHGNGSLSSQTAVPTSSHM 402
Query: 337 --APSLGQ-------QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQT 387
PSL Q QISPLQKP PQ+ P+QL + Q L Q G
Sbjct: 403 GINPSLSQGHHLGGPQISPLQKPTGPPQNF-PVQLQ--------NAQQGQLHASQSLGPG 453
Query: 388 SFSQALPSQHLLGMSGNLPASQPQGQQIASS-STALPTPLNIKPQSSSLPGGTNQQQLPA 446
SF Q +P+ L G LP SQP QQ AS+ + P+ ++ P ++PG QQQLP+
Sbjct: 454 SFGQNIPTMQL---PGQLPVSQPLTQQNASAGALQAPSAVHSNPM-QAVPG---QQQLPS 506
Query: 447 PVQ-QQLHQPYQQSPSQLAQMLSQQTQTLQATFQSSQQAFSQLQQQLQLMQPSNQNLPLQ 505
V Q L QP QQ SQ Q+L QQ Q + S Q QQ + Q Q
Sbjct: 507 NVTPQMLQQPVQQMLSQAPQLLLQQQQAAIQSSYQSSQQTIFQLQQQLQLLQQQQQQHQQ 566
Query: 506 QGSQGTKQQSQWAGIAPQTVASAPASAPAADLPVSTSIGPAAPVSSQTVAPAKS---SWT 562
Q + + +Q Q V S APAA + + P Q +PA S +WT
Sbjct: 567 QPNLNQQPHTQVPKQQGQPVQSNTPGAPAAMMTTKINAIP-----QQVNSPAVSLICNWT 621
Query: 563 EHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQ----------QQQQQKPPVQQPPSQLHS 612
EHTSP+G+KYYYN +T SKWEKPEE L+EQ QQ QQK QQ S +
Sbjct: 622 EHTSPEGFKYYYNSITRESKWEKPEEYILYEQQQHHQKLILLQQHQQKLVAQQLQSPPQA 681
Query: 613 QVLP----AQHIPQTQQVQLQTQLRQQQQQQLQHPFSSSYQAPVVRGQHNAQELGYTQLP 668
Q +P QH PQ+QQ Q Q++Q Q+L Y QL
Sbjct: 682 QTIPPVQSMQHHPQSQQGHNQMQMKQ-------------------------QDLNYNQLQ 716
Query: 669 PVAAGSVNNPTRFQQGLQAAQDWMWKN 695
A G++ +P+R QQG+QAAQ+ WK+
Sbjct: 717 --ATGTI-DPSRIQQGIQAAQERSWKS 740
>gi|32482092|gb|AAP84399.1| FCA protein [Triticum aestivum]
Length = 740
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 301/680 (44%), Positives = 379/680 (55%), Gaps = 89/680 (13%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+ S + KLFVGSVP+TA E+D+RPLFE+HG+V+EVALI+D+KTG+QQGCCF+KYATSEEA
Sbjct: 119 NKSGYVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEA 178
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
+RAIRALHNQ T+PG +GP+QVRYADGE+ER G++E+KLFV SLNKQAT KE+EEIF+P+
Sbjct: 179 ERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPF 238
Query: 167 GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRP
Sbjct: 239 GHVEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRP 298
Query: 227 RPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPG 285
RPG+SR GP FGG G R RP N + I +P ++W P SP +M P
Sbjct: 299 RPGESRGGPAFGGLGVSSRSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ--- 355
Query: 286 IRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLG 341
FG+ G +G P+ P + + S L P S PSL
Sbjct: 356 FNNFGSD--NSMGLMGGPVTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLS 411
Query: 342 Q-------QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALP 394
Q QISPLQKP PQ+ P+QL + Q L Q G SF Q +P
Sbjct: 412 QGHHLGGPQISPLQKPTGQPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIP 462
Query: 395 SQHLLGMSGNLPASQPQGQQIASS------STALPTPLNIKPQSSSLPGGTNQQQLPAPV 448
+ L G LP SQP QQ AS+ S P+ P LP Q L PV
Sbjct: 463 TMQL---PGQLPVSQPLTQQNASAGALQARSAVQSNPMQAVPGQQQLPSNVTPQMLQQPV 519
Query: 449 QQQLHQPYQQSPSQLAQMLSQQTQTLQATF------QSSQQAFSQLQQQLQLMQPSNQNL 502
QQ L Q Q Q + Q+ Q T Q Q QQQ L Q + +
Sbjct: 520 QQMLSQAPQLLLQQQQAAIQSSYQSSQQTIFQLQQQLQLLQQQQQHQQQPNLNQQPHTQV 579
Query: 503 PLQQGSQGTKQQSQWAGIAPQTVASAPASAPAADLPVSTSIGPAAPVSSQTVAPAKS--- 559
P QQG Q V S APAA + + P Q +PA S
Sbjct: 580 PKQQG---------------QPVQSNTPGAPAAMMTTKINAIP-----QQVNSPAVSLTC 619
Query: 560 SWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQQQQQQKPPVQQPPSQLHSQVL---- 615
+WTEHTSP+G+KYYYN +T SKWEKPEE L+EQQQ Q+ +QQ +L +Q L
Sbjct: 620 NWTEHTSPEGFKYYYNSITRESKWEKPEEYILYEQQQHQKLILLQQHQQKLVAQQLQSPP 679
Query: 616 PAQHIPQTQQVQLQTQLRQQQQQQLQHPFSSSYQAPVVRGQHNAQELGYTQLPPVAAGSV 675
AQ IP Q +Q Q +Q Q Q Q+L Y QL A G++
Sbjct: 680 QAQTIPPMQSMQHHPQSQQGHNQM----------------QMKQQDLNYNQLQ--ATGTI 721
Query: 676 NNPTRFQQGLQAAQDWMWKN 695
+P+R QQG+QAAQ+ WK+
Sbjct: 722 -DPSRIQQGIQAAQERSWKS 740
>gi|32482149|gb|AAP84420.1| FCA-D1 [Triticum aestivum]
Length = 659
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 310/691 (44%), Positives = 390/691 (56%), Gaps = 101/691 (14%)
Query: 44 DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATS 103
D + S + KLFVGSVP+TA E+D+RPLFE+HG+V+EVALI+D+KTG+QQGCCF++YATS
Sbjct: 31 DHDNKSGYVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVEYATS 90
Query: 104 EEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIF 163
EEA+RAIRALHNQ T+PG +GP+QVRYADGE+ER G++E+KLFV SLNKQAT KE+EEIF
Sbjct: 91 EEAERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIF 150
Query: 164 SPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223
+P+G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADP
Sbjct: 151 APFGHVEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADP 210
Query: 224 KRPRPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLS 282
KRPRPG+SR GP FGGPG R RP N + I +P ++W P SP +M P
Sbjct: 211 KRPRPGESRGGPAFGGPGVSSRSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ 270
Query: 283 NPGIRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----AP 338
FG+ G +G P+ P + + S L P S P
Sbjct: 271 ---FNNFGSD--NSMGLMGGPVTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINP 323
Query: 339 SLGQ-------QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQ 391
SL Q QISPLQKP PQ+ P+QL + Q L Q G SF Q
Sbjct: 324 SLSQGHHLGGPQISPLQKPTGPPQNF-PVQLQ--------NAQQGQLHASQPLGPGSFGQ 374
Query: 392 ALPSQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-Q 450
+P+ L G LP SQP QQ AS+ AL P + QS+ + QQQLP+ V Q
Sbjct: 375 NIPTMQL---PGQLPVSQPLTQQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQ 428
Query: 451 QLHQPYQQ---------SPSQLAQMLSQQTQTLQATFQSSQQAFSQLQQQLQLMQPSNQN 501
L QP QQ Q A + S + Q FQ QQ QQQ Q N
Sbjct: 429 MLQQPVQQMLSQAPQLLLQQQQAAIQSSYQSSQQTIFQLQQQLQLLQQQQQQQQHQQQPN 488
Query: 502 LPLQQGSQGTKQQSQWAGIAPQTVASAPASAPAADLPVSTSIGPAAPVSSQTVAPAKS-- 559
L Q +Q KQQ Q V S APAA + + P Q +PA S
Sbjct: 489 LNQQPHTQVPKQQG-------QPVQSNTPGAPAAMMTTKLNAIP-----QQVNSPAVSLT 536
Query: 560 -SWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQQQQ----------QQKPPVQQPPS 608
+ TEHTSP+G+KYYYN +T SKWEKPEE L+EQQQQ QQK QQ S
Sbjct: 537 CNLTEHTSPEGFKYYYNSITRESKWEKPEEYVLYEQQQQHQKLILLQQHQQKLVAQQLQS 596
Query: 609 QLHSQVLP----AQHIPQTQQVQLQTQLRQQQQQQLQHPFSSSYQAPVVRGQHNAQELGY 664
+Q +P QH PQ+QQ Q Q++Q Q+L Y
Sbjct: 597 PPQAQTIPPMQSMQHHPQSQQGHNQMQMKQ-------------------------QDLNY 631
Query: 665 TQLPPVAAGSVNNPTRFQQGLQAAQDWMWKN 695
QL A G++ +P+R QQG+QAAQ+ WK+
Sbjct: 632 NQLQ--ATGAI-DPSRIQQGIQAAQERSWKS 659
>gi|32482116|gb|AAP84410.1| FCA protein [Triticum aestivum]
Length = 707
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 295/642 (45%), Positives = 373/642 (58%), Gaps = 97/642 (15%)
Query: 44 DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATS 103
D + S + KLFVGSVP+TA E+D+RPLFE+HG+V+EVALI+D+KTG+QQGCCF+KYATS
Sbjct: 94 DHDNKSGYVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATS 153
Query: 104 EEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIF 163
EEA+RAIRALHNQ T+PG +GP+QVRYADGE+ER G++E+KLFV SLNKQAT KE+EEIF
Sbjct: 154 EEAERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIF 213
Query: 164 SPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223
+P+G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADP
Sbjct: 214 APFGHVEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADP 273
Query: 224 KRPRPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLS 282
KRPRPG+SR GP FGGPG R RP N + I +P ++W P S +M P
Sbjct: 274 KRPRPGESRGGPAFGGPGVSSRSDAALVIRPTANLDEQIGRHMPPDSWRPSSLSSMAP-- 331
Query: 283 NPGIRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLA----VSSTSSALQQNFCQPESQ-- 336
F N P S L GGPA + V + +L P S
Sbjct: 332 ----HQFNNFGPDNSMGLM-----GGPATSTADNVTFRPQVFHGNGSLSSQTAVPTSSHM 382
Query: 337 --APSLGQ-------QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQT 387
PSL Q QISPLQKP PQ+ P+QL + Q L Q G
Sbjct: 383 GINPSLSQGHHLGGPQISPLQKPTGPPQNF-PVQLQ--------NAQQGQLHASQSLGPG 433
Query: 388 SFSQALPSQHLLGMSGNLPASQPQGQQIASS-STALPTPLNIKPQSSSLPGGTNQQQLPA 446
SF Q +P+ L G LP SQP QQ AS+ + P+ ++ P ++PG QQQLP+
Sbjct: 434 SFGQNIPTMQL---PGQLPVSQPLTQQNASAGALQAPSAVHSNPM-QAVPG---QQQLPS 486
Query: 447 PVQ-QQLHQPYQQSPS-QLAQMLSQQTQTLQATFQSSQQAF--------------SQLQQ 490
V Q L QP QQ S +L QQ +++++QSSQQ Q QQ
Sbjct: 487 NVTPQMLQQPVQQMLSQAPQLLLQQQQAAIRSSYQSSQQTIFQLQQQLQLLQQQQQQHQQ 546
Query: 491 QLQLMQPSNQNLPLQQGSQGTKQQSQWAGIAPQTVASAPASAPAADLPVSTSIGPAAPVS 550
Q L Q + +P QQG Q V S APAA + + P
Sbjct: 547 QPNLNQQPHTQVPKQQG---------------QPVQSNTPGAPAAMMTTKINAIP----- 586
Query: 551 SQTVAPAKS---SWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQQQQ---------- 597
Q +PA S +WT+HTSP+G+KYYYN +T SKWEKPEE L+EQQQQ
Sbjct: 587 QQVNSPAVSLTCNWTKHTSPEGFKYYYNSITRESKWEKPEEYILYEQQQQHQKLILLQQH 646
Query: 598 QQKPPVQQPPSQLHSQVLP----AQHIPQTQQVQLQTQLRQQ 635
QQK QQ S +Q +P QH PQ+QQ Q Q++QQ
Sbjct: 647 QQKLVAQQLQSPPQAQTIPPMQSMQHHPQSQQGHNQMQMKQQ 688
>gi|32482076|gb|AAP84394.1| FCA protein [Triticum aestivum]
Length = 734
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 307/688 (44%), Positives = 388/688 (56%), Gaps = 104/688 (15%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+ S + KLFVGSVP+TA E+D+RPLFE+HG+V+EVALI+D+KTG+QQGCCF+KYATSEEA
Sbjct: 112 NKSGYVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEA 171
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
+RAIRALHNQ T+PG +GP+QVRYADGE+ER G++E+KLFV SLNKQAT KE+EEIF+P+
Sbjct: 172 ERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPF 231
Query: 167 GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
G VEDVY+M+D ++QSRGCGFVK+S ++ LAA+N+L+G Y MRGC+QPL VRFAD KRP
Sbjct: 232 GHVEDVYIMKDGMRQSRGCGFVKFSSKEPPLAAMNSLSGTYIMRGCEQPLIVRFADLKRP 291
Query: 227 RPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPG 285
RPG+SR GP FGGPG R RP N + I +P ++W P SP + P
Sbjct: 292 RPGESRGGPAFGGPGVSSRSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSTAPHQ--- 348
Query: 286 IRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLG 341
FG+ G +G P+ P + + S L P S PSL
Sbjct: 349 FNNFGSD--NSMGLMGGPVTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLS 404
Query: 342 Q-------QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALP 394
Q QISPLQKP PQ+ P+QL + Q L Q G SF Q +P
Sbjct: 405 QGHHLGGPQISPLQKPTGQPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIP 455
Query: 395 SQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLH 453
+ L G LP SQP QQ AS+ AL P + QS+ + QQQLP+ V Q L
Sbjct: 456 TMQL---PGQLPVSQPSTQQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVAPQMLQ 509
Query: 454 QPYQQ---------SPSQLAQMLSQQTQTLQATFQSSQQAFSQLQQQLQLMQPSNQNLPL 504
QP QQ Q A + S + Q FQ QQ QQQ QP +L
Sbjct: 510 QPVQQMLSQAPQLLLQQQQAAIQSSYQSSQQTIFQLQQQLQLLQQQQQHQQQP---DLNQ 566
Query: 505 QQGSQGTKQQSQWAGIAPQTVASAPASAPAADLPVSTSIGPAAPVSSQTVAPAKS---SW 561
Q +Q KQQ Q V S APAA + + P Q +PA S +W
Sbjct: 567 QPHTQVPKQQG-------QPVQSNTPGAPAAMMTTKINAIP-----QQVNSPAVSLTCNW 614
Query: 562 TEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQQQQ----------QQKPPVQQPPSQLH 611
TEHTSP+G+KYYYN +T SKWEKPEE L+EQQQQ QQK QQ S
Sbjct: 615 TEHTSPEGFKYYYNSITRESKWEKPEEYILYEQQQQHQKLILLQQHQQKLVAQQLQSPPQ 674
Query: 612 SQVLP----AQHIPQTQQVQLQTQLRQQQQQQLQHPFSSSYQAPVVRGQHNAQELGYTQL 667
+Q +P QH PQ+QQ Q Q++Q Q+L + QL
Sbjct: 675 AQTIPPMQSMQHHPQSQQGHNQMQMKQ-------------------------QDLNHNQL 709
Query: 668 PPVAAGSVNNPTRFQQGLQAAQDWMWKN 695
A G++ +P+R QQG+QAAQ+ WK+
Sbjct: 710 Q--ATGTI-DPSRIQQGIQAAQERSWKS 734
>gi|32482112|gb|AAP84408.1| FCA protein [Triticum aestivum]
Length = 741
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 304/687 (44%), Positives = 388/687 (56%), Gaps = 95/687 (13%)
Query: 44 DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATS 103
D + S + KLFVGSVP+TA E+D+RPLFE+HG+V+EVALI+D+KTG+QQGCCF+KYATS
Sbjct: 115 DHDNKSGYVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATS 174
Query: 104 EEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIF 163
EEA+RAIRALHNQ T+PG +GP+QVRYADGE+ER G++E+KLFV SLNKQAT KE+EEIF
Sbjct: 175 EEAERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIF 234
Query: 164 SPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223
+P+G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+N+L+G Y MRGC+QP VRFADP
Sbjct: 235 APFGHVEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIMRGCEQPSIVRFADP 294
Query: 224 KRPRPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLS 282
KRPRPG+SR GP GGPG R RP N + I +P ++W P SP +M P
Sbjct: 295 KRPRPGESRGGPALGGPGVSSRSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAP-- 352
Query: 283 NPGIRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVS----STSSALQQNFCQPESQ-- 336
F N P S L GGPA + + +L P S
Sbjct: 353 ----HQFNNFGPDNSMGLM-----GGPATSTADNVTFRPQTFHGNGSLSSQTAVPTSSHM 403
Query: 337 --APSLGQ-------QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQT 387
PSL Q ISPLQKP PQ+ P+QL + Q L Q G
Sbjct: 404 GINPSLSQGHHLGGPLISPLQKPTGPPQNF-PVQLQ--------NAQQGQLHASQSLGPG 454
Query: 388 SFSQALPSQHLLGMSGNLPASQPQGQQIASS-STALPTPLNIKPQSSSLPGGTNQQQLPA 446
SF Q +P+ L G LP SQP QQ AS+ + P+ ++ P ++PG QQQLP+
Sbjct: 455 SFGQNIPTMQL---PGQLPVSQPLTQQNASAGALQAPSAVHSNPM-QAVPG---QQQLPS 507
Query: 447 PVQ-QQLHQPYQQSPSQLAQMLSQQTQTLQATFQSSQQAFSQLQQQLQLMQPSNQNLPLQ 505
V Q L +P QQ SQ Q+L QQ Q + S Q QQ + Q Q
Sbjct: 508 NVTPQMLQRPVQQMLSQAPQLLLQQQQAAIQSSYQSSQQTIFQLQQQLQLLQQQQRQHQQ 567
Query: 506 QGSQGTKQQSQWAGIAPQTVASAPASAPAADLPVSTSIGPAAPVSSQTVAPAKS---SWT 562
Q + + +Q Q V S APAA + + P Q +PA S +WT
Sbjct: 568 QPNLNQQPHTQVPKQQGQPVQSNTPGAPAAMMTTKINAIP-----QQVNSPAVSLTCNWT 622
Query: 563 EHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQ----------QQQQQKPPVQQPPSQLHS 612
EHTSP+G+KYYYN +T SKWEKPEE L+EQ QQ QQK QQ S +
Sbjct: 623 EHTSPEGFKYYYNSITRESKWEKPEEYILYEQQQHHQKLILLQQHQQKLVAQQLQSPPQA 682
Query: 613 QVLP----AQHIPQTQQVQLQTQLRQQQQQQLQHPFSSSYQAPVVRGQHNAQELGYTQLP 668
Q +P QH PQ+QQ Q Q++Q Q+L Y QL
Sbjct: 683 QTIPPVQSMQHHPQSQQGHNQMQMKQ-------------------------QDLNYNQLQ 717
Query: 669 PVAAGSVNNPTRFQQGLQAAQDWMWKN 695
A G++ +P+R QQG+QAAQ+ WK+
Sbjct: 718 --ATGTI-DPSRIQQGIQAAQERSWKS 741
>gi|32482125|gb|AAP84413.1| FCA protein, partial [Triticum aestivum]
Length = 722
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 298/670 (44%), Positives = 379/670 (56%), Gaps = 80/670 (11%)
Query: 44 DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATS 103
D + S + KLFVGSVP+TA E+D+RPLFE+HG+V+EVALI+D+KTG+QQGCCF+KYATS
Sbjct: 106 DHDNKSGYVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATS 165
Query: 104 EEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIF 163
EEA+RAIRALHNQ T+PG +GP+QVRYADGE+ER G++E+KLFV SLNKQAT KE+EEIF
Sbjct: 166 EEAERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIF 225
Query: 164 SPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223
+P+G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADP
Sbjct: 226 APFGHVEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADP 285
Query: 224 KRPRPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLS 282
KRPRPG+SR GP FGGPG R RP N + I +P ++W P SP +M P
Sbjct: 286 KRPRPGESRGGPAFGGPGVSSRSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHR 345
Query: 283 NPGIRGFGNQLPPRSGDLGMPLNPGGPADVPLPGL-----AVSSTSSA--LQQNFCQPE- 334
FG+ G +G P+ P + ++SS ++ L P
Sbjct: 346 ---FNNFGSD--NSMGLMGGPVTSAADNVTFRPQMFHGNGSLSSQTAVPTLSHMGINPSL 400
Query: 335 SQAPSLGQ-QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQAL 393
SQ LG QISPLQKP PQ+ P+QL + Q L Q G SF Q +
Sbjct: 401 SQGHHLGGPQISPLQKPTGQPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNI 451
Query: 394 PSQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQQQLH 453
P+ L G LP SQP QQ AS+ AL P + QS+ + QQQLP+ V Q+
Sbjct: 452 PTMRL---PGQLPVSQPLTQQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQML 505
Query: 454 QPYQQSPSQLAQMLSQQTQTLQATFQSSQQAFSQLQQQLQLMQPSNQNLPLQQGSQGTKQ 513
Q Q A L Q Q + Q Q QL Q QQ + +
Sbjct: 506 QQSVQQMLSQAPQLLLQQQQAAIQSSYQSSQQTIFQLQQQLQLLQQQQQHQQQPNLNQQP 565
Query: 514 QSQWAGIAPQTVASAPASAPAADLPVSTSIGPAAPVSSQTVAPAKS---SWTEHTSPDGY 570
+Q Q V S APAA + + P Q +PA S SWTEHTSP+G+
Sbjct: 566 HTQVPKQQGQPVQSNTPGAPAAMMTTKINAIP-----QQVNSPAVSLTCSWTEHTSPEGF 620
Query: 571 KYYYNCVTGVSKWEKPEELTLFEQQQQ----------QQKPPVQQPPSQLHSQVLP---- 616
KYYYN +T SKWEKPEE L+EQQQQ QQK QQ S +Q +P
Sbjct: 621 KYYYNSITRKSKWEKPEEYILYEQQQQHQKLILLQQHQQKLVAQQLQSPPQAQTIPPMQS 680
Query: 617 AQHIPQTQQVQLQTQLRQQQQQQLQHPFSSSYQAPVVRGQHNAQELGYTQLPPVAAGSVN 676
QH PQ+QQ Q Q++Q Q+L Y QL A G++
Sbjct: 681 MQHHPQSQQGHNQMQMKQ-------------------------QDLNYNQLQ--ATGTI- 712
Query: 677 NPTRFQQGLQ 686
+P+R QQG+Q
Sbjct: 713 DPSRIQQGIQ 722
>gi|32482392|gb|AAP84385.1| FCA protein [Triticum aestivum]
Length = 738
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 300/671 (44%), Positives = 381/671 (56%), Gaps = 71/671 (10%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+ S + KLFVGSVP+TA E+D RPLFE+HG+V+EVALI+D+KTG+QQGCCF+KYATSEEA
Sbjct: 117 NKSGYVKLFVGSVPRTANEDDARPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEA 176
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
+RAIR LHNQ T+PG +GP+QVRYADGE+ER G++E+KLFV SLN+QAT KE+EEIF+P+
Sbjct: 177 ERAIRTLHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNRQATAKEIEEIFAPF 236
Query: 167 GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+N+L+G Y M GC+QPL VRFADPKR
Sbjct: 237 GHVEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIMGGCEQPLIVRFADPKRL 296
Query: 227 RPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPG 285
RPG+SR GP FGGPG R RP N + I +P ++W P SP +M P
Sbjct: 297 RPGESRGGPAFGGPGVSSRSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ--- 353
Query: 286 IRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLG 341
FG+ G +G P+ P + + S L P S PSL
Sbjct: 354 FNNFGSD--NSMGLMGGPVTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLS 409
Query: 342 Q-------QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALP 394
Q QISPLQKP PQ+ P+QL + Q L Q G SF Q +P
Sbjct: 410 QGHHLGGPQISPLQKPTGQPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIP 460
Query: 395 SQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLH 453
+ L G LP SQP QQ AS+ AL P + QS+ + QQQLP+ V Q L
Sbjct: 461 TMQL---PGQLPVSQPLTQQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQ 514
Query: 454 QPYQQSPSQL--AQMLSQQTQTLQATFQSSQQAFSQLQQQLQLMQPSNQNLPLQQGSQGT 511
QP QQ SQ + QQT + S Q F QQ L Q Q
Sbjct: 515 QPVQQMLSQAPQLLLQQQQTAIQSSYQSSQQTIFQLQQQLQLLQQQQQHQQQPNLNQQPH 574
Query: 512 KQQSQWAGIAPQTVASAPASAPAADLPVSTSIGPAAPVSSQTVAPAKS---SWTEHTSPD 568
Q + G Q V S APAA + + P Q +PA S +WTEHTSP+
Sbjct: 575 TQVPKQQG---QPVQSNTPGAPAAMMTTKINAIP-----QQVNSPAVSLTCNWTEHTSPE 626
Query: 569 GYKYYYNCVTGVSKWEKPEELTLFEQQQQQQKPPVQQPPSQLHSQVL----PAQHIPQTQ 624
G+KYYYN +T SK EKPEE L+EQQQ+Q+ +QQ +L +Q L AQ IP Q
Sbjct: 627 GFKYYYNSITRESKREKPEECILYEQQQRQKLILLQQHQQKLVAQQLQSPPQAQTIPPMQ 686
Query: 625 QVQLQTQLRQQQQQQLQHPFSSSYQAPVVRGQHNAQELGYTQLPPVAAGSVNNPTRFQQG 684
+Q Q +Q Q Q Q+L Y QL A G++ +P+R QQG
Sbjct: 687 SMQHHPQSQQGHNQM----------------QMKQQDLNYNQLQ--ATGTI-DPSRIQQG 727
Query: 685 LQAAQDWMWKN 695
+QAAQ+ WK+
Sbjct: 728 IQAAQERSWKS 738
>gi|32482081|gb|AAP84396.1| FCA protein [Triticum aestivum]
Length = 719
Score = 424 bits (1089), Expect = e-115, Method: Compositional matrix adjust.
Identities = 293/637 (45%), Positives = 362/637 (56%), Gaps = 87/637 (13%)
Query: 44 DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATS 103
D + S + KLFVGSVP+TA E+D+RPLFE+HG+V+EVALI+D+KTG+QQGCCF+KYATS
Sbjct: 108 DHDNKSGYVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATS 167
Query: 104 EEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIF 163
EEA+RAIRALHNQ T+PG +GP+QVRYADGE+ER G++E+KLFV SLNKQAT KE+EEIF
Sbjct: 168 EEAERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIF 227
Query: 164 SPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223
+P+G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADP
Sbjct: 228 APFGHVEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADP 287
Query: 224 KRPRPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLS 282
KRPRPG+SR GP FGGPG R RP N + I +P ++W P SP +M P
Sbjct: 288 KRPRPGESRGGPAFGGPGVSSRSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ 347
Query: 283 NPGIRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----AP 338
FG+ G +G P+ P + + S L P S P
Sbjct: 348 ---FNNFGSD--NSMGLMGGPVTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINP 400
Query: 339 SLGQ-------QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQL---QIPGQTS 388
SL Q QISPLQKP PQ+ P +QL QN+ RQL Q G S
Sbjct: 401 SLSQGHHLGGPQISPLQKPTGQPQNFP-VQL-----------QNAQQRQLHASQSLGPGS 448
Query: 389 FSQALPSQHLLGMSGNLPASQPQGQQIASS------STALPTPLNIKPQSSSLPGGTNQQ 442
F Q +P+ L G LP SQP QQ AS+ S P+ P LP Q
Sbjct: 449 FGQNIPTMQL---PGQLPVSQPLTQQNASAGALQAPSAVQSNPMQAVPGQQQLPSNVTPQ 505
Query: 443 QLPAPVQQQLHQPYQQSPSQLAQMLSQQTQTLQATF-------QSSQQAFSQLQQQLQLM 495
L PVQQ L Q Q Q + Q+ Q T Q QQ Q QQQ L
Sbjct: 506 MLQQPVQQMLSQAPQLLLQQQQAAIQSSYQSSQQTIFQLQQQLQLLQQQQQQHQQQPNLN 565
Query: 496 QPSNQNLPLQQGSQGTKQQSQWAGIAPQTVASAPASAPAADLPVSTSIGPAAPVSSQTVA 555
Q + +P QQG Q V S APAA + + P Q ++
Sbjct: 566 QQPHTQVPKQQG---------------QPVQSNTPGAPAAMMTTKINAIP-----QQVIS 605
Query: 556 PAKS---SWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQQQQ----------QQKPP 602
PA S +WTEHTSP+G+KYYYN +T SKWEKPEE L+EQQQ QQK
Sbjct: 606 PAVSLICNWTEHTSPEGFKYYYNSITRESKWEKPEEYILYEQQQHHQKLILLQQHQQKLV 665
Query: 603 VQQPPSQLHSQVLP----AQHIPQTQQVQLQTQLRQQ 635
QQ S +Q +P QH PQ+QQ Q Q+RQQ
Sbjct: 666 AQQLQSPPQAQTIPPVQSMQHHPQSQQGHNQMQMRQQ 702
>gi|293333224|ref|NP_001169298.1| uncharacterized protein LOC100383162 [Zea mays]
gi|224028499|gb|ACN33325.1| unknown [Zea mays]
gi|414588978|tpg|DAA39549.1| TPA: hypothetical protein ZEAMMB73_959869 [Zea mays]
Length = 735
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 304/668 (45%), Positives = 368/668 (55%), Gaps = 72/668 (10%)
Query: 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADR 108
S++ KLFVGSVP+TA EED+RPLFEEHG+V+EVALIKD+KTG+QQGCCF+KYATSEEA+R
Sbjct: 119 SNYVKLFVGSVPRTATEEDVRPLFEEHGDVLEVALIKDRKTGEQQGCCFVKYATSEEAER 178
Query: 109 AIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGR 168
AIR LHN +TLPG +GPIQVRYADGERER GA+E+KLFV SLNKQAT KE+EEIF+PYG
Sbjct: 179 AIRGLHNHYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATPKEIEEIFAPYGH 238
Query: 169 VEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRP 228
VEDVY+MRD +KQSRGCGFVK+S ++ A+ A+NAL+G YTMRGC+QPL +RFADPKRPRP
Sbjct: 239 VEDVYIMRDSVKQSRGCGFVKFSSKEAAVEAMNALSGTYTMRGCEQPLIIRFADPKRPRP 298
Query: 229 GDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPGIR 287
G+SR P FGGPGF PR RP N + + +W P SPR M P
Sbjct: 299 GESRGRPAFGGPGFSPRSDAALVIRPTANLDESRGQHMLPESWRPSSPRPMAPNQ---YN 355
Query: 288 GFGNQLP-------PRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQAPSL 340
FG+ P S D P P + L TSS + N P Q L
Sbjct: 356 NFGSDNPLALSGGTVTSADTATFRPPMFPGNGSLSNQTAVPTSSHMGMN--TPMVQEHHL 413
Query: 341 -GQQISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIP---GQTSFSQALPSQ 396
GQQI LQKP PQ+ +QL P + QLQ P G SF Q + S
Sbjct: 414 RGQQIPSLQKPPGPPQNF-AVQLQNAQPGQPLQGHIPQIGQLQAPQSTGPVSFGQNISSM 472
Query: 397 HLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQQQLHQPY 456
L G PASQP Q+ AS P ++PG QQQLP V Q+ Q
Sbjct: 473 QL---PGQPPASQPLMQRNASLGALHAPPSGQSNPMQAVPG---QQQLPTSVAPQMLQQS 526
Query: 457 QQSPSQLAQMLSQQTQTLQATFQSSQQAFSQLQQQLQLMQPSNQNLPLQQGSQGTKQQSQ 516
Q A L Q Q + S Q QQ + NL Q +Q
Sbjct: 527 MQQMPSQAPQLLLQQQAALQSSYQSSQQAIYQLQQQLQLMQQQSNLNQQPSAQ------- 579
Query: 517 WAGIAPQTVASAPASAPAADLPVSTSIGPAAPVSSQTVAPAKSSWTEHTSPDGYKYYYNC 576
+ Q V S+ P A +P T I + + + +WTEHTSP+G+KYYYN
Sbjct: 580 ----SGQPVQSSNTGDPGAIIP--TKINAISQQVGSSAVSSTCNWTEHTSPEGFKYYYNS 633
Query: 577 VTGVSKWEKPEELTLFEQQQQQQKP--------PVQQPPSQLHSQVLPA-QHIPQTQQVQ 627
+T SKWEKPEE L+EQQQQ+ VQQ S Q LP+ Q I Q Q Q
Sbjct: 634 ITRESKWEKPEEYVLYEQQQQKLLLLQQHQQNIAVQQLQSPPQGQSLPSMQPIQQLPQAQ 693
Query: 628 LQTQLRQQQQQQLQHPFSSSYQAPVVRGQHNAQELGYTQLPPVAAGSVNNPTRFQQGLQA 687
QTQ+ +Q QEL Y+Q AAGS+ +P R QQG+ A
Sbjct: 694 GQTQMHMKQ-----------------------QELNYSQF--QAAGSI-DPNRIQQGIPA 727
Query: 688 AQDWMWKN 695
AQ+ WKN
Sbjct: 728 AQERAWKN 735
>gi|32482385|gb|AAP84382.1| FCA protein [Triticum aestivum]
Length = 700
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 286/620 (46%), Positives = 363/620 (58%), Gaps = 59/620 (9%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+ S + KLFVGS P+TA E+D+RPLFE+HG+V+EVALI+D+KTG+QQGCCF+KYATSEEA
Sbjct: 100 NKSGYVKLFVGSAPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEA 159
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
+RAIRALHNQ T+PG +GP+QVR ADGE+ER G++E+KLFV SLNKQAT KE+EEIF+P+
Sbjct: 160 ERAIRALHNQCTIPGAMGPVQVRCADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPF 219
Query: 167 GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRP
Sbjct: 220 GHVEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRP 279
Query: 227 RPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPG 285
RPG+SR GP FGGPG R RP N + I +P ++W P SP +M P
Sbjct: 280 RPGESRGGPAFGGPGVSSRSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ--- 336
Query: 286 IRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSL- 340
FG+ G +G P+ P + + S L P S PSL
Sbjct: 337 FNNFGSD--NSMGLMGGPVTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLS 392
Query: 341 ------GQQISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALP 394
G QISPLQKP PQ+ P+QL + Q L Q G SF Q +P
Sbjct: 393 RGHHLGGPQISPLQKPTGPPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIP 443
Query: 395 SQHLLGMSGNLPASQPQGQQIASS-STALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQL 452
+ L G LP SQP QQ AS+ + P+ ++ P ++PG QQQLP+ V Q L
Sbjct: 444 TMQL---PGQLPVSQPLTQQNASAGALQAPSAVHSNPM-QAVPG---QQQLPSNVTPQML 496
Query: 453 HQPYQQSPSQLAQMLSQQTQTLQATFQSSQQAFSQLQQQLQLMQPSNQNLPLQQGSQGTK 512
QP QQ SQ Q+L QQ Q + S Q QQ + Q QQ + +
Sbjct: 497 QQPVQQMLSQAPQLLLQQQQAAIQSSYQSSQQTIFQLQQQLQLLQQQQQQHQQQPNLNQQ 556
Query: 513 QQSQWAGIAPQTVASAPASAPAADLPVSTSIGPAAPVSSQTVAPAKS---SWTEHTSPDG 569
+Q Q V S APAA + + P Q +PA S +WTEHTSP+G
Sbjct: 557 PHTQVPKQQGQPVQSNTPGAPAAMMTTKINAIP-----QQVNSPAVSLTCNWTEHTSPEG 611
Query: 570 YKYYYNCVTGVSKWEKPEELTLFEQ----------QQQQQKPPVQQPPSQLHSQVLP--- 616
+KYYYN +T SKWEKPEE L+EQ QQ QQK QQ S +Q +P
Sbjct: 612 FKYYYNSITRESKWEKPEEYILYEQQQHHQKLILLQQHQQKLVAQQLQSPPQAQTIPPVQ 671
Query: 617 -AQHIPQTQQVQLQTQLRQQ 635
QH PQ+QQ Q Q++QQ
Sbjct: 672 SMQHHPQSQQGHNQMQMKQQ 691
>gi|218201679|gb|EEC84106.1| hypothetical protein OsI_30426 [Oryza sativa Indica Group]
Length = 758
Score = 390 bits (1002), Expect = e-105, Method: Compositional matrix adjust.
Identities = 288/576 (50%), Positives = 364/576 (63%), Gaps = 38/576 (6%)
Query: 31 QKRGFSGRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG 90
+ R SGRG S D + +++ KLF+GSVP+TA E+D+RPLFEEHG+V+EVALIKD+KTG
Sbjct: 102 RHRYGSGRGDHS-DHDNRNNYVKLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTG 160
Query: 91 QQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSL 150
+QQGCCF+KYATSEEA+RAIRALHNQ+TLPG +GPIQVRYADGERER GA+E+KLFV SL
Sbjct: 161 EQQGCCFVKYATSEEAERAIRALHNQYTLPGAMGPIQVRYADGERERHGAIEHKLFVASL 220
Query: 151 NKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMR 210
NKQAT KE+EEIF+PYG VEDVY+M+D ++QSRGCGFVK+S R+ ALAA++AL+G Y MR
Sbjct: 221 NKQATAKEIEEIFAPYGHVEDVYIMKDGMRQSRGCGFVKFSSREPALAAMSALSGNYVMR 280
Query: 211 GCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNA 269
GC+QPL +RFADPKRPRPG+SR GP FGGPGF PR RP N +P +P ++
Sbjct: 281 GCEQPLIIRFADPKRPRPGESRGGPAFGGPGFSPRSDAALVIRPTANLDEPRGRHMPPDS 340
Query: 270 WHPMSPRNMGPLSNPGIRGFG--NQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQ 327
WHP SPR+ N FG N + P+ + + G S+ +A+
Sbjct: 341 WHPSSPRSAPHQFN----NFGSDNPMAPKGSTVTSTTDTATFRPQMFSGNGSLSSQTAVP 396
Query: 328 QNFCQ-----PESQAPSL-GQQISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQL 381
+ P +Q L GQQI PLQK PQ+ P+QL + QL
Sbjct: 397 SSSHMGMNPPPMAQGHHLGGQQIPPLQKLPGLPQNF-PVQLQNNQQGQPLQGPAQQIGQL 455
Query: 382 QIP---GQTSFSQALPSQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGG 438
Q+P G SF Q + +SG LP SQP QQ AS A+ P + ++PG
Sbjct: 456 QVPQSMGPGSFGQNM-------LSGQLPVSQPLMQQNASVG-AVQAPSAVSNSMQAIPG- 506
Query: 439 TNQQQLPAPVQ-QQLHQPYQQSPSQLAQMLSQQTQTLQATFQSSQQAFSQLQQQLQLMQP 497
QQ LP+ V Q L QP QQ PSQ Q+L QQ LQ+++QSSQQA QLQQQLQLMQ
Sbjct: 507 --QQHLPSNVAPQMLQQPVQQMPSQAPQLLLQQQAALQSSYQSSQQAIYQLQQQLQLMQQ 564
Query: 498 SNQNLPLQQGSQGTKQQSQWAGIAPQTVASAPASAPAADLPVSTSIGPAAPVSSQTVAPA 557
Q+ + +Q +Q A Q V S+ AP A +P + + P S P
Sbjct: 565 QQQS------NLNHQQPTQVAEQHGQPVQSSNPGAPNAIIPSNINTIPQQATS--PAVPL 616
Query: 558 KSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFE 593
+WTEHTSP+G+KYYYN +T SKW+KPEE L+E
Sbjct: 617 TCNWTEHTSPEGFKYYYNSITRESKWDKPEEYVLYE 652
>gi|34555650|gb|AAQ74973.1| flowering time control protein isoform OsFCA-4 [Oryza sativa Indica
Group]
Length = 626
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 289/579 (49%), Positives = 361/579 (62%), Gaps = 53/579 (9%)
Query: 33 RGFSGRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQ 92
R SGRG S D + +++ KLF+GSVP+TA E+D+RPLFEEHG+V+EVALIKD+KTG+Q
Sbjct: 3 RYGSGRGDHS-DHDNRNNYVKLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQ 61
Query: 93 QGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNK 152
QGCCF+KYATSEEA+RAIRALHNQ+TLPG +GPIQVRYADGERER GA+E+KLFV SLNK
Sbjct: 62 QGCCFVKYATSEEAERAIRALHNQYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNK 121
Query: 153 QATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGC 212
QAT KE+EEIF+PYG VEDVY+M+D ++QSRGCGFVK+S R+ ALAA++AL+G Y MRGC
Sbjct: 122 QATAKEIEEIFAPYGHVEDVYIMKDGMRQSRGCGFVKFSSREPALAAMSALSGNYVMRGC 181
Query: 213 DQPLTVRFADPKRPRPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWH 271
+QPL +RFADPKRPRPG+SR GP FGGPGF PR RP N +P +P ++WH
Sbjct: 182 EQPLIIRFADPKRPRPGESRGGPAFGGPGFSPRSDAALVIRPTANLDEPRGRHMPPDSWH 241
Query: 272 PMSPRNMGPLSNPGIRGFG--NQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQN 329
P SPR+ N FG N + P+ + + G S+ +A+ +
Sbjct: 242 PSSPRSAPHQFN----NFGSDNPMAPKGSTVTSTTDTATFRPQMFSGNGSLSSQTAVPSS 297
Query: 330 FCQ-----PESQAPSL-GQQISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQI 383
P +Q L GQQI PLQK PQ+ P+QL + QLQ+
Sbjct: 298 SHMGMNPPPMAQGHHLGGQQIPPLQKLPGLPQNF-PVQLQNNQQGQPLQGPAQQIGQLQV 356
Query: 384 P---GQTSFSQALPSQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTN 440
P G SF Q +SG LP SQP QQ AS S A+ P + ++PG
Sbjct: 357 PQSMGPGSFGQNR-------LSGQLPVSQPLMQQNASVS-AVQVPSAVSNSMQAIPG--- 405
Query: 441 QQQLPAPVQ-QQLHQPYQQSPSQLAQMLSQQTQTLQATFQSSQQAFSQLQQQLQLMQPSN 499
QQ LP+ V Q L QP QQ PSQ Q+L QQ LQ+++QSSQQA QLQQQLQLMQ
Sbjct: 406 QQHLPSNVAPQMLQQPVQQMPSQAPQLLLQQQAALQSSYQSSQQAIYQLQQQLQLMQQQQ 465
Query: 500 QNLPLQQG-SQGTKQQSQWAG----IAPQTVASAPASAPAADLPVSTSIGPAAPVSSQTV 554
Q+ Q +QG QS G I P + + P A PA P++
Sbjct: 466 QSNLNHQQPTQGQPVQSSNPGAPNAIIPSNINTIPQQA----------TSPAVPLT---- 511
Query: 555 APAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFE 593
+WTEHTSP+G+KYYYN +T SKW+KPEE L+E
Sbjct: 512 ----CNWTEHTSPEGFKYYYNSITRESKWDKPEEYVLYE 546
>gi|11045077|emb|CAB41488.2| putative FCA orthologue [Brassica napus]
Length = 384
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 201/315 (63%), Positives = 230/315 (73%), Gaps = 23/315 (7%)
Query: 28 LSGQKRG--------FSGRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVI 79
LSGQKRG F+G D D SS KLFVGSVP+TA EE++RP FE+HGNV+
Sbjct: 78 LSGQKRGRPLLEQSSFTGT-----DFTDRSSMVKLFVGSVPRTATEEEVRPFFEQHGNVL 132
Query: 80 EVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLG 139
EVA IKDK+TGQQQGCCF+KYATSE+ADRAIRALHNQ TLPGG G +QVRYADGERER+G
Sbjct: 133 EVAFIKDKRTGQQQGCCFVKYATSEDADRAIRALHNQITLPGGTGLVQVRYADGERERIG 192
Query: 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAA 199
AVE+KLFVGSLNKQATE EVEE+F +GRVEDVYLMRDE +QSRGCGFVKYS ++ A+AA
Sbjct: 193 AVEFKLFVGSLNKQATENEVEELFLQFGRVEDVYLMRDEYRQSRGCGFVKYSSKETAMAA 252
Query: 200 INALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGPRFQPPSPRPPPNFGD 259
I+ LNG YTMRGC+QPL VRFADPKRP+PG+SR G G GPRFQ PRP N GD
Sbjct: 253 IDGLNGTYTMRGCNQPLIVRFADPKRPKPGESREVAHPVGLGSGPRFQASGPRPTSNLGD 312
Query: 260 PITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNPGG-------PADV 312
D W PM+ NMGP N GIRG G+ L PR G +P N GG PA
Sbjct: 313 LSVDVSHTIPWRPMNSPNMGPPGNTGIRGTGSDLAPRPGQATLPSNQGGPLGGYVVPAIN 372
Query: 313 PLPGLAVSSTSSALQ 327
PLP VSS++++ Q
Sbjct: 373 PLP---VSSSATSQQ 384
>gi|283838931|gb|ADB44797.1| FCA [Vitis vinifera]
Length = 281
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 191/233 (81%), Positives = 204/233 (87%), Gaps = 10/233 (4%)
Query: 2 GGGFRPMSGPRSGM--NYPLPQSLPVPQLSGQKRGFSGRGGP-SPDLVDGSSFAKLFVGS 58
G G RPM G G NY +P LSGQKRGF G SPD DG FAKLFVGS
Sbjct: 56 GAGLRPMGGGGGGFASNYQVP-------LSGQKRGFGFPGRGGSPDRYDGGGFAKLFVGS 108
Query: 59 VPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHT 118
VP+TA EEDIRPLFEEHGNV+EVALIKDK+TGQQQGCCFIKYATSEEA+RAIRALHNQ+T
Sbjct: 109 VPRTATEEDIRPLFEEHGNVLEVALIKDKRTGQQQGCCFIKYATSEEAERAIRALHNQYT 168
Query: 119 LPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE 178
LPGGVGPI+VRYADGERERLGAVEYKLFVGSLNKQATEKEV+EIFSPYG+VEDVYLMRDE
Sbjct: 169 LPGGVGPIEVRYADGERERLGAVEYKLFVGSLNKQATEKEVKEIFSPYGQVEDVYLMRDE 228
Query: 179 LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDS 231
LKQSRGCGFV +SHRDMA+AAINALNGIYTM+GCDQPLTVRFADPKRPRPG+S
Sbjct: 229 LKQSRGCGFVNFSHRDMAMAAINALNGIYTMKGCDQPLTVRFADPKRPRPGES 281
>gi|32482067|gb|AAP84390.1| FCA protein [Triticum aestivum]
Length = 735
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 219/428 (51%), Positives = 273/428 (63%), Gaps = 35/428 (8%)
Query: 44 DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATS 103
D + S + KLFVGSVP+TA E+D+RPLFE+HG+V+EVALI+D+KTG+QQGCCF+KYATS
Sbjct: 110 DHDNKSGYVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATS 169
Query: 104 EEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIF 163
EEA+RAIRALHNQ T+PG +GP+QVRYADGE+ER G++EYKLFV SLNKQAT KE+EEIF
Sbjct: 170 EEAERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEYKLFVASLNKQATAKEIEEIF 229
Query: 164 SPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223
+P+G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADP
Sbjct: 230 APFGHVEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADP 289
Query: 224 KRPRPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLS 282
KRPRPG+SR GP FGGPG R RP N + I +P ++W P SP +M P
Sbjct: 290 KRPRPGESRGGPAFGGPGVSSRSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ 349
Query: 283 NPGIRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----AP 338
FG+ G +G P+ P + + S L P S P
Sbjct: 350 ---FNNFGSD--NSMGLMGGPVTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINP 402
Query: 339 SLGQ-------QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQ 391
SL Q QISPLQKP PQ+ P+QL + Q L Q G SF Q
Sbjct: 403 SLSQGHHLGGPQISPLQKPTGQPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQ 453
Query: 392 ALPSQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-Q 450
+P+ L G LP SQP QQ AS+ AL P + QS+ + QQQLP+ V Q
Sbjct: 454 NIPTMQL---PGQLPVSQPLTQQNASAG-ALQAPSAV--QSNPIQAVPGQQQLPSNVTPQ 507
Query: 451 QLHQPYQQ 458
L QP QQ
Sbjct: 508 MLQQPVQQ 515
>gi|32482108|gb|AAP84406.1| FCA protein [Triticum aestivum]
Length = 724
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 221/426 (51%), Positives = 278/426 (65%), Gaps = 37/426 (8%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+ S + KLFVGSVP+TA E+D+RPLFE+HG+V+EVALI+D+KTG+QQGCCF+KYATSEEA
Sbjct: 102 NKSGYVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEA 161
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
+RAIRALHNQ T+PG +GP+QVRYADGE+ER G++E+KLFV SLNKQAT KE+EEIF+P+
Sbjct: 162 ERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPF 221
Query: 167 GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRP
Sbjct: 222 GHVEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRP 281
Query: 227 RPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPG 285
RPG+SR GP FGGPG R RP N + I +P ++W P SP +M P
Sbjct: 282 RPGESRGGPAFGGPGVSSRSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ--- 338
Query: 286 IRGFGNQLPPRSGDLGMPLNPGGPADVPLPGL-----AVSS-----TSSALQQNFCQPE- 334
FG+ G +G P+ P + ++SS TSS + N P
Sbjct: 339 FNNFGSD--NSIGLMGGPVTSAADNVTFRPQMFHGNGSLSSQTAVPTSSHMGIN---PSL 393
Query: 335 SQAPSLGQ-QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQAL 393
SQ P LG QISPLQKP PQ+ P+QL + Q L Q G SF Q +
Sbjct: 394 SQGPHLGGPQISPLQKPTGQPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNM 444
Query: 394 PSQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQL 452
P+ L G LP SQP QQ AS+ AL P + QS+ + QQQLP+ V Q L
Sbjct: 445 PTMQL---PGQLPVSQPLTQQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQML 498
Query: 453 HQPYQQ 458
QP QQ
Sbjct: 499 QQPVQQ 504
>gi|32482090|gb|AAP84398.1| FCA protein [Triticum aestivum]
Length = 719
Score = 374 bits (960), Expect = e-100, Method: Compositional matrix adjust.
Identities = 219/434 (50%), Positives = 274/434 (63%), Gaps = 47/434 (10%)
Query: 44 DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATS 103
D + S + KLFVGSVP+TA E+D+RPLFE+HG+V+EVALI+D+KTG+QQGCCF+KYATS
Sbjct: 96 DHDNKSGYVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATS 155
Query: 104 EEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIF 163
EEA+RAIRALHNQ T+PG +GP+QVRYADGE+ER G++E+KLFV SLNKQAT KE+EEIF
Sbjct: 156 EEAERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIF 215
Query: 164 SPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223
+P+G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADP
Sbjct: 216 APFGHVEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADP 275
Query: 224 KRPRPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLS 282
KRPRPG+SR GP FGGPG R RP N + I +P ++W P SP +M P
Sbjct: 276 KRPRPGESRGGPAFGGPGVSSRSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ 335
Query: 283 NPGIRGFGNQLPPRSGDLGMPLNPGGP----------ADVPLPGLAVSSTSSALQQNFCQ 332
FG+ G +G P+ + L A TSS + N
Sbjct: 336 ---FNNFGSD--NSMGLMGGPVTSAADNVTFRPQMFHGNGSLSSQAAVPTSSHMGIN--- 387
Query: 333 PESQAPSLGQ-------QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPG 385
PSL Q QISPLQKP PQ+ P+QL + Q L Q G
Sbjct: 388 -----PSLSQGHHLDGPQISPLQKPTGQPQNF-PVQLQ--------NAQQGQLHASQSLG 433
Query: 386 QTSFSQALPSQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLP 445
SF Q +P+ L G LP SQP QQ AS+ AL P + QS+ + QQQLP
Sbjct: 434 PGSFGQNIPTMQL---PGQLPVSQPLTQQNASAG-ALQAPSAV--QSNPMQAVPGQQQLP 487
Query: 446 APVQ-QQLHQPYQQ 458
+ V Q L QP QQ
Sbjct: 488 SNVTPQMLQQPVQQ 501
>gi|32482061|gb|AAP84388.1| FCA protein [Triticum aestivum]
Length = 737
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 216/425 (50%), Positives = 272/425 (64%), Gaps = 35/425 (8%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+ S + KLFVGSVP+TA E+D+RPLFE+HG+V+EVALI+D+KTG+QQGCCF+KYATSEEA
Sbjct: 115 NKSGYVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEA 174
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
+RAI+ALHNQ T+PG +GP+QVRYADGE+ER G++E+KLFV SLNKQAT KE+EEIF+P+
Sbjct: 175 ERAIKALHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPF 234
Query: 167 GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
G VEDVY+M+D ++QSRGCGF K+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRP
Sbjct: 235 GHVEDVYIMKDGMRQSRGCGFAKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRP 294
Query: 227 RPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPG 285
RPG+SR GP FGGPG RF RP N + I +P ++W P SP +M P
Sbjct: 295 RPGESRGGPAFGGPGVSSRFDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ--- 351
Query: 286 IRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLG 341
FG+ G +G P+ P + + S L P S PSL
Sbjct: 352 FNNFGSD--NSMGLMGGPVTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLS 407
Query: 342 Q-------QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALP 394
Q QISPLQKP PQ+ P+QL + Q L Q G SF Q +P
Sbjct: 408 QGHHLGGPQISPLQKPTGQPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIP 458
Query: 395 SQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLH 453
+ L G LP SQP QQ AS+ AL P + QS+ + QQQLP+ V Q L
Sbjct: 459 TMQL---PGQLPVSQPLTQQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQ 512
Query: 454 QPYQQ 458
QP QQ
Sbjct: 513 QPVQQ 517
>gi|32482074|gb|AAP84393.1| FCA protein [Triticum aestivum]
Length = 724
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 217/425 (51%), Positives = 272/425 (64%), Gaps = 35/425 (8%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+ S + KLFVGSVP+TA E+D+RPLFE+HG+V+EVALI+D+KTG+QQGCCF+KYATSEEA
Sbjct: 102 NKSGYVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEA 161
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
+RAIRALHNQ T+PG +GP+QVRYADGE+ER G++E+KLFV SLNKQAT KE+EEIF+P+
Sbjct: 162 ERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPF 221
Query: 167 GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRP
Sbjct: 222 GHVEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRP 281
Query: 227 RPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPG 285
RPG+SR GP FGGPG R RP N + I +P ++W P SP +M P
Sbjct: 282 RPGESRGGPAFGGPGVSSRSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ--- 338
Query: 286 IRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLG 341
FG+ G +G P+ P + + S L P S PSL
Sbjct: 339 FNNFGSD--NSMGLMGGPVTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLS 394
Query: 342 Q-------QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALP 394
Q QISPLQKP PQ+ P+QL + Q L Q G SF Q +P
Sbjct: 395 QGHHLGGPQISPLQKPTGQPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIP 445
Query: 395 SQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLH 453
+ L G LP SQP QQ AS+ AL P + QS+ + QQQLP+ V Q L
Sbjct: 446 TMQL---PGQLPVSQPLTQQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQ 499
Query: 454 QPYQQ 458
QP QQ
Sbjct: 500 QPVQQ 504
>gi|32482142|gb|AAP84417.1| FCA-A1 [Triticum aestivum]
gi|32482144|gb|AAP84418.1| FCA-A2 [Triticum aestivum]
Length = 741
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 217/425 (51%), Positives = 272/425 (64%), Gaps = 35/425 (8%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+ S + KLFVGSVP+TA E+D+RPLFE+HG+V+EVALI+D+KTG+QQGCCF+KYATSEEA
Sbjct: 119 NKSGYVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEA 178
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
+RAIRALHNQ T+PG +GP+QVRYADGE+ER G++E+KLFV SLNKQAT KE+EEIF+P+
Sbjct: 179 ERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPF 238
Query: 167 GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRP
Sbjct: 239 GHVEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRP 298
Query: 227 RPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPG 285
RPG+SR GP FGGPG R RP N + I +P ++W P SP +M P
Sbjct: 299 RPGESRGGPAFGGPGVSSRSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ--- 355
Query: 286 IRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLG 341
FG+ G +G P+ P + + S L P S PSL
Sbjct: 356 FNNFGSD--NSMGLMGGPVTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLS 411
Query: 342 Q-------QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALP 394
Q QISPLQKP PQ+ P+QL + Q L Q G SF Q +P
Sbjct: 412 QGHHLGGPQISPLQKPTGQPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIP 462
Query: 395 SQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLH 453
+ L G LP SQP QQ AS+ AL P + QS+ + QQQLP+ V Q L
Sbjct: 463 TMQL---PGQLPVSQPLTQQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQ 516
Query: 454 QPYQQ 458
QP QQ
Sbjct: 517 QPVQQ 521
>gi|32482094|gb|AAP84400.1| FCA protein [Triticum aestivum]
Length = 737
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 217/425 (51%), Positives = 272/425 (64%), Gaps = 35/425 (8%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+ S + KLFVGSVP+TA E+D+RPLFE+HG+V+EVALI+D+KTG+QQGCCF+KYATSEEA
Sbjct: 114 NKSGYVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEA 173
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
+RAIRALHNQ T+PG +GP+QVRYADGE+ER G++E+KLFV SLNKQAT KE+EEIF+P+
Sbjct: 174 ERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPF 233
Query: 167 GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRP
Sbjct: 234 GHVEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRP 293
Query: 227 RPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPG 285
RPG+SR GP FGGPG R RP N + I +P ++W P SP +M P
Sbjct: 294 RPGESRGGPAFGGPGVSSRSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ--- 350
Query: 286 IRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLG 341
FG+ G +G P+ P + + S L P S PSL
Sbjct: 351 FNNFGSD--NSMGLMGGPVTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLS 406
Query: 342 Q-------QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALP 394
Q QISPLQKP PQ+ P+QL + Q L Q G SF Q +P
Sbjct: 407 QGHHLGGPQISPLQKPTGQPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIP 457
Query: 395 SQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLH 453
+ L G LP SQP QQ AS+ AL P + QS+ + QQQLP+ V Q L
Sbjct: 458 TMQL---PGQLPVSQPLTQQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQ 511
Query: 454 QPYQQ 458
QP QQ
Sbjct: 512 QPVQQ 516
>gi|32482114|gb|AAP84409.1| FCA protein [Triticum aestivum]
Length = 736
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 216/425 (50%), Positives = 272/425 (64%), Gaps = 35/425 (8%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+ S + KLFVGSVP+TA E+D+RPLFE+HG+V+EVALI+D+KTG+QQGCCF+KYATSEEA
Sbjct: 114 NKSGYVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEA 173
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
+RAIRALHNQ T+PG +GP+QVRYADGE+ER G++E+KLFV SLNKQAT KE+EEIF+P+
Sbjct: 174 ERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPF 233
Query: 167 GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRP
Sbjct: 234 GHVEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRP 293
Query: 227 RPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPG 285
RPG+SR GP FGGPG R RP N + I +P ++W P SP +M P
Sbjct: 294 RPGESRGGPAFGGPGVSSRSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ--- 350
Query: 286 IRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLG 341
FG+ G +G P+ P + + S L P S PSL
Sbjct: 351 FNNFGSD--NSMGLMGGPVTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLS 406
Query: 342 Q-------QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALP 394
Q QISP+QKP PQ+ P+QL + Q L Q G SF Q +P
Sbjct: 407 QGHHLGGPQISPMQKPTGQPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIP 457
Query: 395 SQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLH 453
+ L G LP SQP QQ AS+ AL P + QS+ + QQQLP+ V Q L
Sbjct: 458 TMQL---PGQLPVSQPLTQQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQ 511
Query: 454 QPYQQ 458
QP QQ
Sbjct: 512 QPVQQ 516
>gi|32482381|gb|AAP84380.1| FCA protein [Triticum aestivum]
Length = 721
Score = 370 bits (951), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 216/426 (50%), Positives = 274/426 (64%), Gaps = 31/426 (7%)
Query: 44 DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATS 103
D + S + KLFVGSVP+TA E+D+RPLFE HG+V+EVALI+D+KTG+QQGCCF+KYATS
Sbjct: 96 DHDNKSGYVKLFVGSVPRTANEDDVRPLFEGHGDVLEVALIRDRKTGEQQGCCFVKYATS 155
Query: 104 EEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIF 163
EEA+RAIRALHNQ T+PG +GP+QVRYADGE+ER G++E+KLFV SLNKQAT KE+EEIF
Sbjct: 156 EEAERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIF 215
Query: 164 SPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223
+P+G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+++L+G Y MRGC+QPL VRFADP
Sbjct: 216 APFGHVEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMDSLSGTYIMRGCEQPLIVRFADP 275
Query: 224 KRPRPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLS 282
KRPRPG+SR GP FGGPG R RP N + I P ++W P SP +M P
Sbjct: 276 KRPRPGESRGGPAFGGPGVSSRSDAALVIRPTANLDEQIGRHTPPDSWRPSSPSSMAPHQ 335
Query: 283 NPGIRGFGNQLPPRSGDLGMPLNPGGPADVPLPGL-----AVSSTSSALQQNFCQPE--- 334
FG+ G +G P+ P + ++SS ++ L +
Sbjct: 336 ---FNNFGSD--NSMGLMGGPVTSAADNVTFRPQMFHGNGSLSSQTAVLTSSHMGINPSL 390
Query: 335 SQAPSLGQ-QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQAL 393
SQ LG QISPLQKP PQ+ P+QL + Q L Q G SF Q +
Sbjct: 391 SQGHHLGGPQISPLQKPTGQPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNI 441
Query: 394 PSQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQL 452
P+ L G LP SQP QQ AS+ AL P + QS+ + QQQLP+ V Q L
Sbjct: 442 PTMQL---PGQLPVSQPLTQQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQML 495
Query: 453 HQPYQQ 458
QP QQ
Sbjct: 496 QQPVQQ 501
>gi|32482102|gb|AAP84403.1| FCA protein [Triticum aestivum]
Length = 730
Score = 370 bits (951), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 216/425 (50%), Positives = 271/425 (63%), Gaps = 35/425 (8%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+ S + KLFVGSVP+TA E+D+RPLFE+HG+V+EVALI+D+KTG+QQGCCF+KYATSEEA
Sbjct: 108 NKSGYVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEA 167
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
+R IRALHNQ T+PG +GP+QVRYADGE+ER G++E+KLFV SLNKQAT KE+EEIF+P+
Sbjct: 168 ERVIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPF 227
Query: 167 GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRP
Sbjct: 228 GHVEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRP 287
Query: 227 RPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPG 285
RPG+SR GP FGGPG R RP N + I IP ++W P SP +M P
Sbjct: 288 RPGESRGGPAFGGPGVSSRSDAALVIRPTANLDEQIGRHIPPDSWRPSSPSSMAPHQ--- 344
Query: 286 IRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLG 341
FG+ G +G P+ P + + S L P S PSL
Sbjct: 345 FNNFGSD--NSMGLMGGPVTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLS 400
Query: 342 Q-------QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALP 394
Q QISPLQKP PQ+ P+QL + Q L Q G SF Q +P
Sbjct: 401 QGHHLGGPQISPLQKPTGQPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIP 451
Query: 395 SQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLH 453
+ + G LP SQP QQ AS+ AL P + QS+ + QQQLP+ V Q L
Sbjct: 452 T---MQSPGQLPVSQPLTQQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSSVTPQMLQ 505
Query: 454 QPYQQ 458
QP QQ
Sbjct: 506 QPVQQ 510
>gi|32482140|gb|AAP84416.1| FCA protein, partial [Triticum aestivum]
Length = 740
Score = 370 bits (950), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 218/428 (50%), Positives = 273/428 (63%), Gaps = 35/428 (8%)
Query: 44 DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATS 103
D + S + KLFVGSVP+TA E+D+RPLFE+HG+V+EVALI+D+KTG+QQGCCF+KYATS
Sbjct: 112 DHDNKSGYVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATS 171
Query: 104 EEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIF 163
EEA+RAIRALHNQ T+PG +GP+QVRYADGE+ER G++E+KLFV SLNKQAT KE+EEIF
Sbjct: 172 EEAERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIF 231
Query: 164 SPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223
+P+G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADP
Sbjct: 232 APFGHVEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADP 291
Query: 224 KRPRPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLS 282
KRPRPG+ R GP FGGPG R RP N + I +P ++W P SP +M P
Sbjct: 292 KRPRPGEPRGGPAFGGPGVSSRSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ 351
Query: 283 NPGIRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----AP 338
FG+ G +G P+ P + + S L P S P
Sbjct: 352 ---FNNFGSD--NSMGLMGGPVTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINP 404
Query: 339 SLGQ-------QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQ 391
SL Q QISPLQKP PQ+ P+QL + Q L Q G SF Q
Sbjct: 405 SLSQGHHLGGPQISPLQKPTGPPQNF-PVQLQ--------NAQQGQLHASQPLGPGSFGQ 455
Query: 392 ALPSQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-Q 450
+P+ L G LPASQP QQ AS+ AL P + QS+ + QQQLP+ V Q
Sbjct: 456 NIPTMQL---PGQLPASQPLTQQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQ 509
Query: 451 QLHQPYQQ 458
L QP QQ
Sbjct: 510 MLQQPVQQ 517
>gi|32482100|gb|AAP84402.1| FCA protein [Triticum aestivum]
Length = 736
Score = 370 bits (950), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 218/430 (50%), Positives = 274/430 (63%), Gaps = 45/430 (10%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+ S + KLFVGSVP+TA E+D+RPLFE HG+V+EVALI+D+KTG+QQGCCF+KYATSEEA
Sbjct: 113 NKSGYVKLFVGSVPRTANEDDVRPLFENHGDVLEVALIRDRKTGEQQGCCFVKYATSEEA 172
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
+RAIRALHNQ T+PG +GP+QVRYADGE+ER G++E+KLFV SLNKQAT KE+EEIF+P+
Sbjct: 173 ERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPF 232
Query: 167 GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRP
Sbjct: 233 GHVEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRP 292
Query: 227 RPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPG 285
RPG+SR GP FGGPG R RP N + I +P ++W P SP +M P
Sbjct: 293 RPGESRGGPAFGGPGVSSRSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAP----- 347
Query: 286 IRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLA----VSSTSSALQQNFCQPESQ----A 337
F N P S L GGPA + + + +L P S
Sbjct: 348 -HQFNNFGPDNSMGLM-----GGPATSTADNVTFRPQMFHGNGSLSSQTAVPTSSHMGIN 401
Query: 338 PSLGQ-------QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFS 390
PSL Q QISPLQKP PQ+ P+QL + Q L Q G SF
Sbjct: 402 PSLSQGHHLGGPQISPLQKPTGPPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFG 452
Query: 391 QALPSQHLLGMSGNLPASQPQGQQIASS-STALPTPLNIKPQSSSLPGGTNQQQLPAPVQ 449
Q +P+ L G LP SQP QQ AS+ + P+ ++ P ++PG QQQLP+ V
Sbjct: 453 QNIPTMQL---PGQLPVSQPLTQQNASAGALQAPSAVHSNPM-QAVPG---QQQLPSNVT 505
Query: 450 -QQLHQPYQQ 458
Q L QP QQ
Sbjct: 506 PQMLQQPVQQ 515
>gi|32482371|gb|AAP84378.1| FCA protein [Triticum aestivum]
Length = 736
Score = 370 bits (950), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 216/425 (50%), Positives = 271/425 (63%), Gaps = 35/425 (8%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+ S + KLFVGSVP+TA E+D+RPLFE+HG+V+EVALI+D+ TG+QQGCCF+KYATSEEA
Sbjct: 114 NKSGYVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRNTGEQQGCCFVKYATSEEA 173
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
+RAIRALHNQ T+PG +GP+QVRYADGE+ER G++E+KLFV SLNKQAT KE+EEIF+P+
Sbjct: 174 ERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPF 233
Query: 167 GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRP
Sbjct: 234 GHVEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRP 293
Query: 227 RPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPG 285
RPG+SR GP FGGPG R RP N + I +P ++W P SP +M P
Sbjct: 294 RPGESRGGPAFGGPGVSSRSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ--- 350
Query: 286 IRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLG 341
FG+ G +G P+ P + + S L P S PSL
Sbjct: 351 FNNFGSD--NSMGLMGGPVTSAADNVTFRPQMFRGNGS--LSSQTAVPTSSHMGINPSLS 406
Query: 342 Q-------QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALP 394
Q QISPLQKP PQ+ P+QL + Q L Q G SF Q +P
Sbjct: 407 QGHHLGGPQISPLQKPTGQPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIP 457
Query: 395 SQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLH 453
+ L G LP SQP QQ AS+ AL P + QS+ + QQQLP+ V Q L
Sbjct: 458 TMQL---PGQLPVSQPLTQQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQ 511
Query: 454 QPYQQ 458
QP QQ
Sbjct: 512 QPVQQ 516
>gi|32482373|gb|AAP84379.1| FCA protein [Triticum aestivum]
Length = 737
Score = 370 bits (950), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 216/425 (50%), Positives = 271/425 (63%), Gaps = 35/425 (8%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+ S + KLFVGSVP+TA E+D+RPLFE+HG+V+EVALI+D+KTG+QQGCCF+KYATSEEA
Sbjct: 115 NKSGYVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEA 174
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
+R IRALHNQ T+PG +GP+QVRYADGE+ER G++E+KLFV SLNKQAT KE+EEIF+P+
Sbjct: 175 ERVIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPF 234
Query: 167 GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRP
Sbjct: 235 GHVEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRP 294
Query: 227 RPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPG 285
RPG+SR GP FGGPG R RP N + I +P ++W P SP +M P
Sbjct: 295 RPGESRGGPAFGGPGVSSRSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ--- 351
Query: 286 IRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLG 341
FG+ G +G P+ P + + S L P S PSL
Sbjct: 352 FNNFGSD--NSMGLMGGPVTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLS 407
Query: 342 Q-------QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALP 394
Q QISPLQKP PQ+ P+QL + Q L Q G SF Q +P
Sbjct: 408 QGHHLGGPQISPLQKPTGQPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIP 458
Query: 395 SQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLH 453
+ L G LP SQP QQ AS+ AL P + QS+ + QQQLP+ V Q L
Sbjct: 459 TMQL---PGQLPVSQPLTQQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQ 512
Query: 454 QPYQQ 458
QP QQ
Sbjct: 513 QPVQQ 517
>gi|32482104|gb|AAP84404.1| FCA protein [Triticum aestivum]
Length = 738
Score = 370 bits (949), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 216/425 (50%), Positives = 271/425 (63%), Gaps = 35/425 (8%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+ S + KLFVGSVP+TA E+D+RPLFE+HG+V+EVALI+D+KTG+QQGCCF+KYATSEEA
Sbjct: 116 NKSGYVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEA 175
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
+RAIRALHNQ T+PG +GP+QVRY DGE+ER G++E+KLFV SLNKQAT KE+EEIF+P+
Sbjct: 176 ERAIRALHNQCTIPGAMGPVQVRYTDGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPF 235
Query: 167 GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRP
Sbjct: 236 GHVEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRP 295
Query: 227 RPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPG 285
RPG+SR GP FGGPG R RP N + I +P ++W P SP +M P
Sbjct: 296 RPGESRGGPAFGGPGVSSRSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ--- 352
Query: 286 IRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLG 341
FG+ G +G P+ P + + S L P S PSL
Sbjct: 353 FNNFGSD--NSMGLMGGPVTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLS 408
Query: 342 Q-------QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALP 394
Q QISPLQKP PQ+ P+QL + Q L Q G SF Q +P
Sbjct: 409 QGHHLGGPQISPLQKPTGQPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIP 459
Query: 395 SQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLH 453
+ L G LP SQP QQ AS+ AL P + QS+ + QQQLP+ V Q L
Sbjct: 460 TMQL---PGQLPVSQPLTQQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQ 513
Query: 454 QPYQQ 458
QP QQ
Sbjct: 514 QPVQQ 518
>gi|32482096|gb|AAP84401.1| FCA protein [Triticum aestivum]
Length = 735
Score = 370 bits (949), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 216/425 (50%), Positives = 271/425 (63%), Gaps = 35/425 (8%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+ S + KLFVGSVP+TA E+D+RPLFE+HG+V+EVALI+D+KTG+QQGCCF+KYATSEEA
Sbjct: 113 NKSGYVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEA 172
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
+RAIRALHNQ T+PG +GP+QVRYADGE+ER G++ +KLFV SLNKQAT KE+EEIF+P+
Sbjct: 173 ERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIGHKLFVASLNKQATAKEIEEIFAPF 232
Query: 167 GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRP
Sbjct: 233 GHVEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRP 292
Query: 227 RPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPG 285
RPG+SR GP FGGPG R RP N + I +P ++W P SP +M P
Sbjct: 293 RPGESRGGPAFGGPGVSSRSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ--- 349
Query: 286 IRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLG 341
FG+ G +G P+ P + + S L P S PSL
Sbjct: 350 FNNFGSD--NSMGLMGGPVTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLS 405
Query: 342 Q-------QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALP 394
Q QISPLQKP PQ+ P+QL + Q L Q G SF Q +P
Sbjct: 406 QGHHLGGPQISPLQKPTGQPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIP 456
Query: 395 SQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLH 453
+ L G LP SQP QQ AS+ AL P + QS+ + QQQLP+ V Q L
Sbjct: 457 TMQL---PGQLPVSQPLTQQNASAG-ALQAPSAV--QSNPMQAAPGQQQLPSNVTPQMLQ 510
Query: 454 QPYQQ 458
QP QQ
Sbjct: 511 QPVQQ 515
>gi|32482079|gb|AAP84395.1| FCA protein [Triticum aestivum]
Length = 734
Score = 369 bits (948), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 216/425 (50%), Positives = 272/425 (64%), Gaps = 35/425 (8%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+ S + KLFVGSVP+TA E+D+RPLFE+HG+V+EVALI+D+KTG+QQGCCF+KYATSEEA
Sbjct: 112 NKSGYVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEA 171
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
+RAIRALHNQ T+PG +GP+QVRYADGE+ER G++E+KLFV SLNKQAT KE+EEIF+P+
Sbjct: 172 ERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPF 231
Query: 167 GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRP
Sbjct: 232 GHVEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLVVRFADPKRP 291
Query: 227 RPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPG 285
RPG+SR GP FGGPG R RP N + I +P ++W P SP +M P
Sbjct: 292 RPGESRGGPAFGGPGVSSRSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ--- 348
Query: 286 IRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLG 341
FG+ G +G P+ P + + S L P S PSL
Sbjct: 349 FNNFGSD--NSMGLMGGPVTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLS 404
Query: 342 Q-------QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALP 394
Q QISPLQKP PQ+ P+QL + Q L Q G SF Q +P
Sbjct: 405 QGHHLGGPQISPLQKPTGQPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIP 455
Query: 395 SQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLH 453
+ + G LP SQP QQ AS+ AL P + QS+ + QQQLP+ V Q L
Sbjct: 456 T---MQSPGQLPVSQPLTQQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQ 509
Query: 454 QPYQQ 458
QP QQ
Sbjct: 510 QPVQQ 514
>gi|32482390|gb|AAP84384.1| FCA protein [Triticum aestivum]
Length = 737
Score = 369 bits (946), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 215/425 (50%), Positives = 271/425 (63%), Gaps = 35/425 (8%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+ S + KLFVGSVP+TA E+D+RPLFE+HG+V+EVALI+D+KTG+QQGCCF+KYATSEEA
Sbjct: 115 NKSGYVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEA 174
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
+RAIRALHNQ T+PG +GP+QVRYADGE+ER G++E+KLFV SLNKQAT KE+EEIF+P+
Sbjct: 175 ERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPF 234
Query: 167 GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRP
Sbjct: 235 GHVEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRP 294
Query: 227 RPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPG 285
RPG+SR GP FGGPG R RP N + +P ++W P SP +M P
Sbjct: 295 RPGESRGGPAFGGPGVSSRSDAALVIRPTANLDEQTGRHMPPDSWRPSSPSSMAPHQ--- 351
Query: 286 IRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLG 341
FG+ G +G P+ P + + S L P S PSL
Sbjct: 352 FNNFGSD--NSMGLMGGPVTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLS 407
Query: 342 Q-------QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALP 394
Q QISPLQKP PQ+ P+QL + Q L Q G SF Q +P
Sbjct: 408 QGHHLGGPQISPLQKPTGQPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIP 458
Query: 395 SQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLH 453
+ L G LP SQP Q+ AS+ AL P + QS+ + QQQLP+ V Q L
Sbjct: 459 TMQL---PGQLPVSQPLTQRNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQ 512
Query: 454 QPYQQ 458
QP QQ
Sbjct: 513 QPVQQ 517
>gi|32482085|gb|AAP84397.1| FCA protein [Triticum aestivum]
Length = 740
Score = 368 bits (944), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 216/425 (50%), Positives = 270/425 (63%), Gaps = 35/425 (8%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+ S +AKLFVGSVP+TA E+D+RPLFE+HG+V+EVALI+D+KTG+QQGCCF+KY TSEEA
Sbjct: 118 NKSGYAKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYTTSEEA 177
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
+RAIRALHNQ T+PG +GP+QVRYADGE+ER G++E+KLFV SLNKQAT KE+EEIF+P+
Sbjct: 178 ERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPF 237
Query: 167 GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+N+L+G Y MRGC+QPL V FADPKRP
Sbjct: 238 GHVEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVLFADPKRP 297
Query: 227 RPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPG 285
RPG+SR GP FGGPG R RP N + I +P ++W P SP +M P
Sbjct: 298 RPGESRGGPAFGGPGVSSRSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ--- 354
Query: 286 IRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLG 341
G+ P G +G P+ P + + S L P S PSL
Sbjct: 355 FNNLGSDNP--MGLMGGPVTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLS 410
Query: 342 Q-------QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALP 394
Q QISPLQKP PQ+ P+QL + Q L Q G SF Q +P
Sbjct: 411 QGHHLGGPQISPLQKPTGQPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIP 461
Query: 395 SQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLH 453
+ L G LP SQP QQ AS+ AL P + QS+ + QQQLP V Q L
Sbjct: 462 TMQL---PGQLPVSQPLTQQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPTNVTPQMLQ 515
Query: 454 QPYQQ 458
QP QQ
Sbjct: 516 QPVQQ 520
>gi|32482394|gb|AAP84386.1| FCA protein [Triticum aestivum]
Length = 735
Score = 367 bits (943), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 213/425 (50%), Positives = 267/425 (62%), Gaps = 35/425 (8%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+ S + KLFVGSVP+TA E+D+RPLFE+HG+V+EVALI+D+KTG+QQGCCF+KYATSEEA
Sbjct: 113 NKSGYVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEA 172
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
+RAIRALHNQ T+PG +GP+QVRYADGE+ER G++E+KLFV SLN+QAT KE+EEIF+P+
Sbjct: 173 ERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNRQATAKEIEEIFAPF 232
Query: 167 GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRP
Sbjct: 233 GHVEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRP 292
Query: 227 RPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPG 285
RPG+SR GP FGGPG R RP N + I +P + W P SP +M P
Sbjct: 293 RPGESRGGPAFGGPGVSSRSDAALVIRPTANLDEQIGRHMPPDGWRPSSPSSMAPHQ--- 349
Query: 286 IRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLG 341
FG+ G +G P+ P + + S L P S PSL
Sbjct: 350 FNNFGSD--NSMGLMGGPVTSAADNATFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLS 405
Query: 342 Q-------QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALP 394
Q QI PLQKP PQ+ P + Q L Q G SF Q +P
Sbjct: 406 QGHHLGGPQILPLQKPTGQPQNF---------PVRLQNAQQGQLHASQSLGPGSFGQNIP 456
Query: 395 SQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLH 453
+ L G LP SQP QQ AS+ AL P + QS+ + QQQLP+ V Q L
Sbjct: 457 TMQL---PGQLPVSQPLTQQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQ 510
Query: 454 QPYQQ 458
QP QQ
Sbjct: 511 QPVQQ 515
>gi|32482072|gb|AAP84392.1| FCA protein [Triticum aestivum]
Length = 736
Score = 367 bits (941), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 213/425 (50%), Positives = 267/425 (62%), Gaps = 35/425 (8%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+ S + KLFVGSVP+TA E+D+RPLFE+HG+V+EVALI+D+KTG+QQGCCF+KYATSEEA
Sbjct: 114 NKSGYVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEA 173
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
+RAIRALHNQ T+PG +GP+QVRY DGE+ER G++E+KLFV SLNKQAT KE+EEIF+P+
Sbjct: 174 ERAIRALHNQCTIPGAMGPVQVRYVDGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPF 233
Query: 167 GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
G VEDVY+MRD ++QSRGCG VK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRP
Sbjct: 234 GHVEDVYIMRDGMRQSRGCGLVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRP 293
Query: 227 RPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPG 285
RPG+SR GP FGGPG R RP N + I +P ++W P SP +M P
Sbjct: 294 RPGESRGGPAFGGPGVSSRSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ--- 350
Query: 286 IRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLG 341
FG+ G +G P+ P + + S L P S PSL
Sbjct: 351 FNNFGSD--NSMGLMGGPVTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLS 406
Query: 342 Q-------QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALP 394
Q QISPLQKP PQ+ P+ + Q L Q G SF Q +
Sbjct: 407 QGHHLGGPQISPLQKPTGQPQNF---------PAQLQNAQQGQLHASQSLGPGSFGQNIS 457
Query: 395 SQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLH 453
+ L G LP SQP QQ AS+ AL P + QS+ + QQQLP+ V Q L
Sbjct: 458 TMQL---PGQLPVSQPLTQQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQ 511
Query: 454 QPYQQ 458
QP QQ
Sbjct: 512 QPVQQ 516
>gi|32482388|gb|AAP84383.1| FCA protein [Triticum aestivum]
Length = 710
Score = 366 bits (940), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 215/425 (50%), Positives = 270/425 (63%), Gaps = 35/425 (8%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+ S + KLFVGSVP+TA E+D+RPLFE HG+V+EVALI+D+KTG+QQGCCF+KYATSEEA
Sbjct: 113 NKSGYVKLFVGSVPRTANEDDVRPLFEYHGDVLEVALIRDRKTGEQQGCCFVKYATSEEA 172
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
+RAIRALHNQ T+PG +GP+QVRYADGE+ER G++E+KLFV SLNKQAT KE+EEIF+P+
Sbjct: 173 ERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPF 232
Query: 167 GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRP
Sbjct: 233 GHVEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRP 292
Query: 227 RPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPG 285
RPG+SR GP FGGPG R RP N + I +P ++W P SP +M P
Sbjct: 293 RPGESRGGPAFGGPGVSSRSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ--- 349
Query: 286 IRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLG 341
FG+ G +G P+ P + + S L P S PSL
Sbjct: 350 FNNFGSD--NSMGLMGGPVTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLS 405
Query: 342 Q-------QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALP 394
Q QI PLQKP PQ+ P+QL + Q L Q G SF Q +P
Sbjct: 406 QGHHLGGPQIPPLQKPTGQPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIP 456
Query: 395 SQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLH 453
+ L G LP SQP QQ AS+ AL P + QS+ + Q+QLP+ V Q L
Sbjct: 457 TMQL---PGQLPVSQPSTQQNASAG-ALQAPSAV--QSNPMQAVPGQRQLPSNVTPQMLR 510
Query: 454 QPYQQ 458
QP QQ
Sbjct: 511 QPVQQ 515
>gi|32482069|gb|AAP84391.1| FCA protein [Triticum aestivum]
Length = 732
Score = 365 bits (938), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 214/425 (50%), Positives = 270/425 (63%), Gaps = 35/425 (8%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+ S + K FVGSVP+TA E+D+RPLFE+HG+V+EVALI+D+KTG+QQGCCF+KYATSEEA
Sbjct: 110 NKSGYVKFFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEA 169
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
+RAIRALHNQ T+PG +GP+QVRYADGE+ER G++E+KLFV SLNKQAT KE+EEIF+P+
Sbjct: 170 ERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPF 229
Query: 167 GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRP
Sbjct: 230 GHVEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRP 289
Query: 227 RPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPG 285
RPG+SR GP FGGPG R RP N + I +P ++W P SP +M P
Sbjct: 290 RPGESRGGPAFGGPGVSSRSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ--- 346
Query: 286 IRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLG 341
FG+ G +G P+ P + + S L P S PSL
Sbjct: 347 FNNFGSD--NSMGLMGGPVTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLS 402
Query: 342 Q-------QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALP 394
Q QISPLQ+P PQ+ P+QL + Q L Q G S Q +P
Sbjct: 403 QGHHLGGPQISPLQRPTGQPQNF-PVQLQ--------NAQQGQLHASQSLGPGSSGQNIP 453
Query: 395 SQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLH 453
+ L G LP SQP QQ AS+ AL P + QS+ + QQQLP+ V Q L
Sbjct: 454 TMQL---PGQLPVSQPLTQQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQ 507
Query: 454 QPYQQ 458
QP QQ
Sbjct: 508 QPAQQ 512
>gi|32482118|gb|AAP84411.1| FCA protein, partial [Triticum aestivum]
Length = 736
Score = 365 bits (938), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 215/425 (50%), Positives = 271/425 (63%), Gaps = 35/425 (8%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+ S + KLFVGSVP+TA E+D+RPLFE+HG+V+EVALI+ +KTG+QQGCCF+KYATSEEA
Sbjct: 115 NKSGYVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRGRKTGEQQGCCFVKYATSEEA 174
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
+RAIRA HNQ T+PG +GP+QVRYADGE+ER G++E+KLFV SLNKQAT KE+EEIF+P+
Sbjct: 175 ERAIRAQHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPF 234
Query: 167 GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRP
Sbjct: 235 GHVEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGAYIMRGCEQPLIVRFADPKRP 294
Query: 227 RPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPG 285
RPG+SR GP FGGPG R RP N + I +P ++W P SP +M P
Sbjct: 295 RPGESRGGPAFGGPGVSSRSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQFNN 354
Query: 286 IRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLG 341
+ G N + G +G P+ P + + S L P S PSL
Sbjct: 355 L-GSDNSM----GLMGGPVTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLS 407
Query: 342 Q-------QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALP 394
Q QISPLQKP PQ+ P+QL + Q L Q G SF Q +P
Sbjct: 408 QGHHLGGPQISPLQKPTGQPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIP 458
Query: 395 SQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLH 453
+ L G LP SQP QQ AS+ AL P + QS+ + QQQLP+ V Q L
Sbjct: 459 TMQL---PGQLPVSQPLTQQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQ 512
Query: 454 QPYQQ 458
QP QQ
Sbjct: 513 QPVQQ 517
>gi|32482130|gb|AAP84415.1| FCA protein, partial [Triticum aestivum]
Length = 743
Score = 365 bits (937), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 215/425 (50%), Positives = 270/425 (63%), Gaps = 35/425 (8%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+ S + KLFVGSVP+TA E+D+RPLFE+HG+V+EVALI+D+KTG+QQGCCF+KYATSEEA
Sbjct: 121 NKSGYVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEA 180
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
+RAIRALHNQ T+PG +GP+QVRYADGE+ER G++E+KLFV SLNKQAT KE+ EIF+P+
Sbjct: 181 ERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIGEIFAPF 240
Query: 167 GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
G VEDVY+M+D ++QSRG GFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRP
Sbjct: 241 GHVEDVYIMKDGMRQSRGSGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRP 300
Query: 227 RPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPG 285
RPG+SR GP FGGPG R RP N + I +P ++W P SP +M P
Sbjct: 301 RPGESRGGPAFGGPGVSSRSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ--- 357
Query: 286 IRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLG 341
FG+ G +G P+ P + + S L P S PSL
Sbjct: 358 FNNFGSD--NSMGLMGGPVTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLS 413
Query: 342 Q-------QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALP 394
Q QISPLQKP PQ+ P+QL + Q L Q G SF Q +P
Sbjct: 414 QGHHLGGPQISPLQKPTGQPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIP 464
Query: 395 SQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLH 453
+ L G LP SQP QQ AS+ AL P + QS+ + QQQLP+ V Q L
Sbjct: 465 TMQL---PGQLPVSQPLTQQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQ 518
Query: 454 QPYQQ 458
QP QQ
Sbjct: 519 QPVQQ 523
>gi|32482369|gb|AAP84377.1| FCA protein [Triticum aestivum]
Length = 727
Score = 365 bits (937), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 216/425 (50%), Positives = 270/425 (63%), Gaps = 35/425 (8%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+ S + KLFVGSVP+TA E+D+RPLFE+HG+V+EVALI+D+KTG+QQG CF+KYATSEEA
Sbjct: 109 NKSGYVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGRCFVKYATSEEA 168
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
+RAIRALHNQ T+PG +GP+QVRYADGERER G++E+KLFV SLNKQAT KE+EEIF+P+
Sbjct: 169 ERAIRALHNQCTIPGAMGPVQVRYADGERERHGSIEHKLFVASLNKQATAKEIEEIFAPF 228
Query: 167 GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRP
Sbjct: 229 GHVEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRP 288
Query: 227 RPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPG 285
RPG+SR GP FGGPG R R N + I +P ++W P SP +M P
Sbjct: 289 RPGESRGGPAFGGPGVSSRSDAALVIRTTANLDEQIGRHMPPDSWRPSSPSSMAPHQ--- 345
Query: 286 IRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLG 341
FG+ G +G P+ P + + S L P S PSL
Sbjct: 346 FNNFGSD--NSMGLMGGPVTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLS 401
Query: 342 Q-------QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALP 394
Q QISPLQKP PQ+ P+QL + Q L Q G SF Q +P
Sbjct: 402 QGHHLGGPQISPLQKPTGQPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIP 452
Query: 395 SQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLH 453
+ L G LP SQP QQ AS+ AL P + QS+ + QQQLP+ V Q L
Sbjct: 453 TMQL---PGQLPVSQPLTQQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQ 506
Query: 454 QPYQQ 458
QP QQ
Sbjct: 507 QPVQQ 511
>gi|32482127|gb|AAP84414.1| FCA protein [Triticum aestivum]
Length = 740
Score = 364 bits (935), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 214/427 (50%), Positives = 272/427 (63%), Gaps = 33/427 (7%)
Query: 44 DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATS 103
D + SS+ KL VGSVP+TA E+D+RPLFE+HG+V+EVALI+D+KTG+QQGCCF+KYATS
Sbjct: 116 DHDNKSSYVKLIVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATS 175
Query: 104 EEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIF 163
EE + AIRALHNQ T+PG +GP+QVRY DGE+ER G++E+KLFV SLNKQAT KE+EEIF
Sbjct: 176 EETESAIRALHNQCTIPGAMGPVQVRYTDGEKERHGSIEHKLFVASLNKQATAKEIEEIF 235
Query: 164 SPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223
+P+G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADP
Sbjct: 236 APFGHVEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADP 295
Query: 224 KRPRPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLS 282
KRPRPG+SR GP FGGPG R RP N + I +P ++W P SP +M P
Sbjct: 296 KRPRPGESRGGPAFGGPGVSSRSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ 355
Query: 283 NPGIRGFGNQLPPRSGDLGMPLNPGGPADVPLPGL-----AVSS-----TSSALQQNFCQ 332
FG+ G +G P+ P + ++SS TSS + N
Sbjct: 356 ---FNNFGSD--NSMGLMGGPVTSAADNVTFRPQMFHGNGSLSSQTAVPTSSHMGINPSL 410
Query: 333 PESQAPSLGQQISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQA 392
P+ G ISPLQKP PQ+ P+QL + Q L Q G SF Q
Sbjct: 411 PQGHHLG-GPLISPLQKPTGQPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQN 460
Query: 393 LPSQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQ 451
+P+ L G LP SQP QQ AS+ AL P + QS+ + QQQLP+ V Q
Sbjct: 461 IPTMQL---PGQLPVSQPLTQQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQM 514
Query: 452 LHQPYQQ 458
L QP QQ
Sbjct: 515 LQQPVQQ 521
>gi|222142946|gb|ACI16484.2| flowering time control protein [Hordeum vulgare]
Length = 743
Score = 363 bits (931), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 216/430 (50%), Positives = 272/430 (63%), Gaps = 45/430 (10%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+ S + KLFVGSVP+TA E+D+RPLFE+HG+V+EVALI+D+KTG+QQGCCF+KYATSEEA
Sbjct: 119 NKSGYVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEA 178
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
+RAIRALHNQ T+PG +GP+QVRYADGE+ER G++E+KLFV SLNKQAT KE+EEIF+P+
Sbjct: 179 ERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPF 238
Query: 167 GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFA+PKRP
Sbjct: 239 GHVEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFANPKRP 298
Query: 227 RPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPG 285
RPG+SR GP FGGPG R RP N + I +P + W P SP +M P
Sbjct: 299 RPGESRGGPAFGGPGVSSRSDAALVIRPTANLDEQIGRHMPPDTWRPSSPSSMAPHQ--- 355
Query: 286 IRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLA----VSSTSSALQQNFCQPESQ----A 337
FG+ D M L GGP +A + + +L P S
Sbjct: 356 FNNFGS-------DNSMGLM-GGPVTSAADNVAFRPQLFHGNGSLSSQTAVPASSHMGIN 407
Query: 338 PSLGQ-------QISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFS 390
PSL Q QI PLQKP Q+ P+QL + Q L Q G SF
Sbjct: 408 PSLSQGHHLGGPQIPPLQKPTGLQQNF-PVQLQ--------NAQQGQLHASQSLGPGSFG 458
Query: 391 QALPSQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQ-SSSLPGGTNQQQLPAPVQ 449
Q +P+ L G LP SQP QQ A S+ AL P ++ S+PG QQQLP+ +
Sbjct: 459 QNIPTMQL---PGQLPVSQPLTQQNA-SACALQAPSAVQSNPMQSVPG---QQQLPSNLT 511
Query: 450 -QQLHQPYQQ 458
Q L QP QQ
Sbjct: 512 PQMLQQPVQQ 521
>gi|32482367|gb|AAP84376.1| FCA protein [Triticum aestivum]
Length = 735
Score = 362 bits (930), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 215/425 (50%), Positives = 271/425 (63%), Gaps = 35/425 (8%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+ S + KLFVGSVP+TA E+D+RPLFE+HG+V+EVALI+D+KTG+QQGC F+KYATSEEA
Sbjct: 113 NKSGYVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCRFVKYATSEEA 172
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
+RAIRALHNQ T+PG +GP+QVRYADGE+ER G++E+KLFV SLNKQAT KE+EEIF+P+
Sbjct: 173 ERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPF 232
Query: 167 GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRP
Sbjct: 233 GHVEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRP 292
Query: 227 RPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPG 285
RPG+SR GP FGGPG R RP N + I +P ++W P SP +M P
Sbjct: 293 RPGESRGGPAFGGPGVSSRSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ--- 349
Query: 286 IRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSL- 340
FG+ +G +G P+ P + + S L P S PSL
Sbjct: 350 FNNFGSD--NSTGLMGGPVTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLS 405
Query: 341 ------GQQISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALP 394
G QISPLQK PQ+ P+QL + Q L+ Q G SF Q P
Sbjct: 406 RGHHLGGPQISPLQKLTGQPQNF-PVQLQ--------NAQQGQLQASQSLGPGSFGQNKP 456
Query: 395 SQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLH 453
+ L G LP SQP QQ AS+ AL P + QS+ + QQQLP+ V Q L
Sbjct: 457 TMQL---PGQLPVSQPLTQQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQ 510
Query: 454 QPYQQ 458
QP QQ
Sbjct: 511 QPVQQ 515
>gi|357155243|ref|XP_003577055.1| PREDICTED: flowering time control protein FCA-like [Brachypodium
distachyon]
Length = 749
Score = 360 bits (924), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 208/411 (50%), Positives = 264/411 (64%), Gaps = 16/411 (3%)
Query: 44 DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATS 103
D + S + KLFVGSVP+TA E+D+RPLF +HG+V+EVALI+D+KTG+QQGCCF+KYATS
Sbjct: 119 DHDNKSGYVKLFVGSVPRTANEDDVRPLFADHGDVLEVALIRDRKTGEQQGCCFVKYATS 178
Query: 104 EEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIF 163
EEA+RAIRALHNQ T+PG +GP+QVRYADGE+ER G++E+KLFV SLNKQAT KE+EEIF
Sbjct: 179 EEAERAIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIF 238
Query: 164 SPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223
SP+G VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADP
Sbjct: 239 SPFGHVEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYVMRGCEQPLIVRFADP 298
Query: 224 KRPRPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLS 282
KRPRPG+SR GP FGGPG PR RP N +P +P ++WHP SP +M P
Sbjct: 299 KRPRPGESRGGPAFGGPGVSPRSDAALVIRPTANLDEPRGRHMPPDSWHPSSPNSMAPHQ 358
Query: 283 NPGIRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSAL----QQNFCQPESQAP 338
G N + G + N + G ST +AL SQ
Sbjct: 359 FNNNFGSDNHMGLMGGSVASADNAAFRPQM-FHGNGSLSTQTALPTSSHMGMNPSISQGH 417
Query: 339 SL-GQQISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQH 397
L GQQI PLQK P H P+QL H+ Q G +S SQ +P+
Sbjct: 418 HLGGQQILPLQK-APGPLHNFPVQLQNAQQGQLQQIGQHHVPQSL--GPSSLSQHIPA-- 472
Query: 398 LLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPV 448
+ + G LP SQP QQ +S+ AL P + QS+ + QQQL + V
Sbjct: 473 -MPLPGQLPVSQPLTQQ-NTSAGALQAPSAV--QSNLMQAVPGQQQLTSNV 519
>gi|34555648|gb|AAQ74972.1| flowering time control protein isoform OsFCA-2 [Oryza sativa Indica
Group]
Length = 649
Score = 349 bits (895), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 228/443 (51%), Positives = 285/443 (64%), Gaps = 30/443 (6%)
Query: 31 QKRGFSGRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG 90
+ R SGRG S D + +++ KLF+GSVP+TA E+D+RPLFEEHG+V+EVALIKD+KTG
Sbjct: 102 RHRYGSGRGDHS-DHDNRNNYVKLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTG 160
Query: 91 QQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSL 150
+QQGCCF+KYATSEEA+RAIRALHNQ+TLPG +GPIQVRYADGERER GA+E+KLFV SL
Sbjct: 161 EQQGCCFVKYATSEEAERAIRALHNQYTLPGAMGPIQVRYADGERERHGAIEHKLFVASL 220
Query: 151 NKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMR 210
NKQAT KE+EEIF+PYG VEDVY+M+D ++QSRGCGFVK+S R+ ALAA++AL+G Y MR
Sbjct: 221 NKQATAKEIEEIFAPYGHVEDVYIMKDGMRQSRGCGFVKFSSREPALAAMSALSGNYVMR 280
Query: 211 GCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNA 269
GC+QPL +RFADPKRPRPG+SR GP FGGPGF PR RP N +P +P ++
Sbjct: 281 GCEQPLIIRFADPKRPRPGESRGGPAFGGPGFSPRSDAALVIRPTANLDEPRGRHMPPDS 340
Query: 270 WHPMSPRNMGPLSNPGIRGFG--NQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQ 327
WHP SPR+ N FG N + P+ + + G S+ +A+
Sbjct: 341 WHPSSPRSAPHQFN----NFGSDNPMAPKGSTVTSTTDTATFRPQMFSGNGSLSSQTAVP 396
Query: 328 QNFCQ-----PESQAPSL-GQQISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQL 381
+ P +Q L GQQI PLQK PQ+ P+QL + QL
Sbjct: 397 SSSHMGMNPPPMAQGHHLGGQQIPPLQKLPGLPQNF-PVQLQNNQLGQPLQGPAQQIGQL 455
Query: 382 QIP---GQTSFSQALPSQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGG 438
Q+P G SF Q +SG LP SQP QQ AS S A+ P + ++PG
Sbjct: 456 QVPQSMGPGSFGQNR-------LSGQLPVSQPLMQQNASVS-AVQVPSAVSNSMQAIPG- 506
Query: 439 TNQQQLPAPVQ-QQLHQPYQQSP 460
QQ LP+ V Q L QP QQ P
Sbjct: 507 --QQHLPSNVAPQMLQQPVQQMP 527
>gi|32482055|gb|AAP84374.1| FCA-A1 [Triticum aestivum]
Length = 602
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 204/404 (50%), Positives = 255/404 (63%), Gaps = 35/404 (8%)
Query: 68 IRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127
+RPLFE+HG+V+EVALI+D+KTG+QQGCCF+KYATSEEA+RAIRALHNQ T+PG +GP+Q
Sbjct: 1 VRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRALHNQCTIPGAMGPVQ 60
Query: 128 VRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGF 187
VRYADGE+ER G++E+KLFV SLNKQAT KE+EEIF+P+G VEDVY+M+D ++QSRGCGF
Sbjct: 61 VRYADGEKERHGSIEHKLFVASLNKQATAKEIEEIFAPFGHVEDVYIMKDGMRQSRGCGF 120
Query: 188 VKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGPRFQ 247
VK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRPRPG+SR GP FGGPG R
Sbjct: 121 VKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRPRPGESRGGPAFGGPGVSSRSD 180
Query: 248 PP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNP 306
RP N + I +P ++W P SP +M P FG+ G +G P+
Sbjct: 181 AALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ---FNNFGSD--NSMGLMGGPVTS 235
Query: 307 GGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLGQ-------QISPLQKPLQSPQ 355
P + + S L P S PSL Q QISPLQKP PQ
Sbjct: 236 AADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLSQGHHLGGPQISPLQKPTGQPQ 293
Query: 356 HMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQGQQI 415
+ P+QL + Q L Q G SF Q +P+ L G LP SQP QQ
Sbjct: 294 NF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIPTMQL---PGQLPVSQPLTQQN 341
Query: 416 ASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLHQPYQQ 458
AS+ AL P + QS+ + QQQLP+ V Q L QP QQ
Sbjct: 342 ASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQQPVQQ 382
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEAD 107
GS KLFV S+ K A ++I +F G+V +V ++KD Q +GC F+K+++ E A
Sbjct: 72 GSIEHKLFVASLNKQATAKEIEEIFAPFGHVEDVYIMKDGMR-QSRGCGFVKFSSKEPAL 130
Query: 108 RAIRALHNQHTLPGGVGPIQVRYADGERERLG 139
A+ +L + + G P+ VR+AD +R R G
Sbjct: 131 AAMNSLSGTYIMRGCEQPLIVRFADPKRPRPG 162
>gi|50261759|gb|AAT72460.1| FCA gamma protein [Lolium perenne]
Length = 668
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 203/408 (49%), Positives = 252/408 (61%), Gaps = 40/408 (9%)
Query: 51 FAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAI 110
+ KLFVG+VP+ A E+D+R L EEHG+V+EVALI+DKKTG+QQ CCF+KYATSE A RAI
Sbjct: 51 YVKLFVGTVPRIASEDDVRHLSEEHGDVLEVALIRDKKTGEQQECCFVKYATSEGAKRAI 110
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
RALHNQ+T+PG +GP++VRYAD E+ERLG++E+KLFV SLNKQAT KE+EEIFSP+G VE
Sbjct: 111 RALHNQYTIPGAMGPVEVRYADCEKERLGSIEHKLFVASLNKQATAKEIEEIFSPFGHVE 170
Query: 171 DVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGD 230
DVY+M+D +QSRGCGFV++S ++ AL+A+N+L+G Y MRGC+QPL VRFADPKRPRPG+
Sbjct: 171 DVYIMKDGTRQSRGCGFVEFSSKEPALSAVNSLSGTYIMRGCEQPLIVRFADPKRPRPGE 230
Query: 231 SRSGPTFGGPGFGPRFQPP-SPRPPPNFGDPITDQIPQNAWHPMSP--------RNMGPL 281
SR GP FGG G PR RP N +P +P++AW P SP N G
Sbjct: 231 SRGGPAFGGSGVSPRSDAALVIRPTANLDEPRGRHMPRDAWRPSSPSSVASHQFNNYGSD 290
Query: 282 SNPGIRGFGNQLPPRSGDLGMPLNPG-GPADVPLPGLAVSSTSSALQQNFCQPESQAPSL 340
+ GI G +G + PG G VP TSS + N Q L
Sbjct: 291 NPMGIMGGTGTSAADNGAFRPQMFPGNGQTAVP--------TSSHMGIN---TSLQGHHL 339
Query: 341 GQQISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLG 400
G Q P + P H LQL QN + +PG F Q +PS L
Sbjct: 340 GGQQIPPLQKPPGPPHNFSLQL-----------QNQQGQHSLVPGL--FGQNVPSMQL-- 384
Query: 401 MSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPV 448
G LP SQP QQ AS+ AL P I QSS + QQQLP+ V
Sbjct: 385 -PGQLPTSQPLTQQNASAG-ALQAPPAI--QSSPMQSVPGQQQLPSNV 428
>gi|168041276|ref|XP_001773118.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675665|gb|EDQ62158.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 203
Score = 312 bits (799), Expect = 4e-82, Method: Composition-based stats.
Identities = 145/189 (76%), Positives = 169/189 (89%), Gaps = 1/189 (0%)
Query: 44 DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATS 103
D DGS F KLFVGSVP+T E+++RP+F EHGNV+EVA+IKDK+TG QQGCCF+KY+T
Sbjct: 9 DTTDGS-FVKLFVGSVPRTITEDEVRPMFAEHGNVLEVAIIKDKRTGNQQGCCFVKYSTV 67
Query: 104 EEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIF 163
EEA+RAIRALHNQ TLPGGV P+QVRYADGERERLGAVE+KLFVGSLNKQA+EKE+EE+F
Sbjct: 68 EEAERAIRALHNQKTLPGGVSPVQVRYADGERERLGAVEHKLFVGSLNKQASEKEIEELF 127
Query: 164 SPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223
PYGRV+DVY+MRDE KQSRGC F+KYS RD A AAINALNG++ M+GCDQPL VRFADP
Sbjct: 128 IPYGRVDDVYIMRDEQKQSRGCAFIKYSQRDHAQAAINALNGVHIMQGCDQPLAVRFADP 187
Query: 224 KRPRPGDSR 232
KRP+ GD+R
Sbjct: 188 KRPKGGDAR 196
Score = 70.9 bits (172), Expect = 3e-09, Method: Composition-based stats.
Identities = 39/96 (40%), Positives = 59/96 (61%), Gaps = 1/96 (1%)
Query: 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEAD 107
G+ KLFVGS+ K A E++I LF +G V +V +++D++ Q +GC FIKY+ + A
Sbjct: 103 GAVEHKLFVGSLNKQASEKEIEELFIPYGRVDDVYIMRDEQK-QSRGCAFIKYSQRDHAQ 161
Query: 108 RAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEY 143
AI AL+ H + G P+ VR+AD +R + G Y
Sbjct: 162 AAINALNGVHIMQGCDQPLAVRFADPKRPKGGDARY 197
>gi|224068610|ref|XP_002302783.1| predicted protein [Populus trichocarpa]
gi|222844509|gb|EEE82056.1| predicted protein [Populus trichocarpa]
Length = 491
Score = 308 bits (790), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 148/234 (63%), Positives = 175/234 (74%), Gaps = 11/234 (4%)
Query: 29 SGQKRGFSGRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKK 88
+G+KRG S D DG AKL++ +P+T EE+IR LFEEHG+V+EV L +DK+
Sbjct: 61 NGRKRG----RFHSSDYGDGGVNAKLYIAPIPRTTTEENIRSLFEEHGSVVEVVLPRDKR 116
Query: 89 TGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERER-------LGAV 141
TGQQQ CF+KYAT EEADRAIRALHNQHT+PG V P +VRYADGERER +G
Sbjct: 117 TGQQQAYCFVKYATFEEADRAIRALHNQHTIPGEVAPFKVRYADGERERPVARCSMVGGF 176
Query: 142 EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAIN 201
KL+VGS+NK A+++E+EEIFSPYG VEDVY+ RDELKQSRGC FVK++HRDMALAAI
Sbjct: 177 VDKLYVGSINKLASKQEIEEIFSPYGHVEDVYIARDELKQSRGCAFVKFAHRDMALAAIK 236
Query: 202 ALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGPRFQPPSPRPPP 255
LNG TMRGCDQPL VRFADPK+P+ G+ R FGGP FGP Q P RP P
Sbjct: 237 GLNGTLTMRGCDQPLIVRFADPKKPKTGELRGSFAFGGPNFGPCSQQPMIRPAP 290
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 88/176 (50%), Gaps = 21/176 (11%)
Query: 457 QQSPSQLAQMLSQQTQTLQATFQSSQQAFSQLQQQLQLMQPSNQNLPLQQGSQGTKQQSQ 516
+ SPSQL+QM Q Q + FQS QQA +Q Q+++ Q Q+
Sbjct: 335 KHSPSQLSQMPLQHMQAPEKCFQSPQQAIFDTHKQTQILEQQQN-------QQLALQEPA 387
Query: 517 WAGIAPQTVASAPASAPAADLPVSTSIGPAAPVSSQTVAPAKSSWTEHTSPDGYKYYYNC 576
W G PAS S+ A P S Q V P + W+EH+ PDGYKYYYNC
Sbjct: 388 WTG------NIQPAS--------RNSVTSAVPPSPQIVDPGECDWSEHSCPDGYKYYYNC 433
Query: 577 VTGVSKWEKPEELTLFEQQQQQQKPPVQQPPSQLHSQVLPAQHIPQTQQVQLQTQL 632
+T S+WEKP E+TLF QQ Q++K S V A+ + QTQ+V L+ L
Sbjct: 434 ITCESRWEKPVEITLFLQQFQEEKRLHGSNQQSSLSPVCSAEEVDQTQKVLLEMCL 489
>gi|297744002|emb|CBI36972.3| unnamed protein product [Vitis vinifera]
Length = 672
Score = 308 bits (788), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 220/500 (44%), Positives = 264/500 (52%), Gaps = 109/500 (21%)
Query: 142 EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAIN 201
E KL+VG LNKQA+++E+EEIFSPYG VED++++RD++KQSRGCGFVK S+RDMA+AAIN
Sbjct: 241 EDKLYVGYLNKQASKREIEEIFSPYGIVEDIFIVRDDMKQSRGCGFVKLSNRDMAVAAIN 300
Query: 202 ALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGPRFQPPSPRPPPNFGDPI 261
ALNG Y MRGCDQPL VRFADPK+PR G+SR FGGP FGPR Q P P PN GDP+
Sbjct: 301 ALNGNYVMRGCDQPLIVRFADPKKPRIGESRGHVAFGGPKFGPRSQEPLGWPAPNVGDPM 360
Query: 262 TDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSS 321
W P PL P P +S
Sbjct: 361 --------WRQFLPN--------------------------PLYPASP----------NS 376
Query: 322 TSSALQQNFCQPESQAPSLGQQISPLQKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQL 381
T+S+ Q + A L QIS LQ+PLQS H
Sbjct: 377 TASSCQSS--NVLWSASLLVSQISLLQEPLQSTLH------------------------- 409
Query: 382 QIPGQTSFSQALPSQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQ 441
FS +L NL Q Q SS++ P P + +PQ S NQ
Sbjct: 410 -------FSTSL----------NL-----QVMQSNSSASVQPIPAHSQPQVVSQTA--NQ 445
Query: 442 Q-QLPAPVQQQLHQPYQQSPSQLAQMLSQQTQTLQATFQSSQQAFSQLQQQLQLMQPSNQ 500
Q +P+ VQQ LH +QQSPSQ Q Q TLQ QS ++A S++Q+QL L P Q
Sbjct: 446 QPNVPSAVQQPLHT-WQQSPSQELQ----QAHTLQKGSQSLKEAVSEIQKQLHLAPPPTQ 500
Query: 501 NLPLQQGSQGTKQQSQWAGIAPQTVASAPASAPAADLPVSTSIGPAAPVSSQTVAPAKSS 560
NL QQ S T QQ+ G PQTVAS + P A LP S PA SS+T +
Sbjct: 501 NLEQQQNSHVTTQQT---GSNPQTVAST-GTLPPAVLPSIVSSSPAVCASSETADLLECD 556
Query: 561 WTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQQ----QQQQKPPVQQPPSQLHSQVLP 616
W+EH PDG+KYYYNC T S+WEKPEE LF QQ QQ Q P QQ S HSQVL
Sbjct: 557 WSEHICPDGFKYYYNCETCESRWEKPEEYILFLQQLPKHQQLQNPSGQQCQSPCHSQVLS 616
Query: 617 AQHIPQTQQVQLQTQLRQQQ 636
Q QT+ V LQT+L Q+
Sbjct: 617 TQQNFQTRIVPLQTELSHQK 636
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/112 (64%), Positives = 87/112 (77%), Gaps = 3/112 (2%)
Query: 28 LSGQKRGFSGRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDK 87
SG+KR + G D +G +F KL+VG VP+T EEDIR LFEEHG ++EV L+KDK
Sbjct: 70 FSGRKRWLNNSGH---DYNEGVAFVKLYVGCVPRTVTEEDIRSLFEEHGKIVEVVLLKDK 126
Query: 88 KTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLG 139
+TGQQQ CCF+KYAT +EADRAI+AL+NQ TLPGGV I+VRYADGERERL
Sbjct: 127 RTGQQQECCFVKYATMDEADRAIKALNNQRTLPGGVAAIKVRYADGERERLA 178
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 133 GERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYS 191
G G KL+VG + + TE+++ +F +G++ +V L++D+ Q + C FVKY+
Sbjct: 81 GHDYNEGVAFVKLYVGCVPRTVTEEDIRSLFEEHGKIVEVVLLKDKRTGQQQECCFVKYA 140
Query: 192 HRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
D A AI ALN T+ G + VR+AD +R R
Sbjct: 141 TMDEADRAIKALNNQRTLPGGVAAIKVRYADGERER 176
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KL+VG + K A + +I +F +G V ++ +++D Q +GC F+K + + A AI A
Sbjct: 243 KLYVGYLNKQASKREIEEIFSPYGIVEDIFIVRDD-MKQSRGCGFVKLSNRDMAVAAINA 301
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLG 139
L+ + + G P+ VR+AD ++ R+G
Sbjct: 302 LNGNYVMRGCDQPLIVRFADPKKPRIG 328
>gi|302818861|ref|XP_002991103.1| hypothetical protein SELMODRAFT_450105 [Selaginella moellendorffii]
gi|300141197|gb|EFJ07911.1| hypothetical protein SELMODRAFT_450105 [Selaginella moellendorffii]
Length = 509
Score = 301 bits (772), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 137/211 (64%), Positives = 167/211 (79%), Gaps = 5/211 (2%)
Query: 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQG---CCFIKYATSEEA 106
++ KLFVGSVP+T E+ +R +FEE+G V+EVA+IKD++TG QQG CCF+KY++ +EA
Sbjct: 40 TYVKLFVGSVPRTITEQQVRSMFEEYGEVLEVAIIKDRRTGHQQGMFCCCFVKYSSRDEA 99
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
DRAIR L+NQ TLPGG P+QVRYADGERERLGA+E+KLFVG LNK A+E+E+EE+FSPY
Sbjct: 100 DRAIRCLNNQRTLPGGASPVQVRYADGERERLGAIEHKLFVGCLNKHASEREIEEVFSPY 159
Query: 167 GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
GRV+D+Y+MRDE KQSRGC F+KY RDMA AAI ALN +Y MRGCDQPL VRFADPKRP
Sbjct: 160 GRVDDIYVMRDEHKQSRGCAFIKYPSRDMAQAAIAALNDVYIMRGCDQPLAVRFADPKRP 219
Query: 227 RPGDSRS--GPTFGGPGFGPRFQPPSPRPPP 255
+ GDSR+ P G G R S R P
Sbjct: 220 KTGDSRNSFSPRHHGSGSNNRSSGHSGRASP 250
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 72/143 (50%), Gaps = 18/143 (12%)
Query: 460 PSQLAQMLSQQTQTLQATFQSSQQAFSQLQQQLQLMQPSNQNLPLQQGSQGTKQQSQWAG 519
PSQ +Q L Q TQ L + Q S Q L L QN+P QQ Q A
Sbjct: 359 PSQQSQFL-QLTQPLASINQPS--LILHNHQALHL-----QNIPQQQQHPPVFQPGSIAQ 410
Query: 520 IAPQTVASAPASAPAADLPVSTSIGPAAPVSSQTVAPAKSSWTEHTSPDGYKYYYNCVTG 579
P + SAP + LP PA P + VAPA S+WTEH SPDGYKYYYN +T
Sbjct: 411 QPPSWLLSAPTQLVQSLLPT-----PALPPA--VVAPATSNWTEHVSPDGYKYYYNSITS 463
Query: 580 VSKWEKPEELTLFEQQQQQQKPP 602
SKWE+P+EL EQQ PP
Sbjct: 464 ESKWERPDEL---EQQVAPTLPP 483
>gi|186511883|ref|NP_849542.2| RNA binding / abscisic acid binding protein [Arabidopsis thaliana]
gi|332658327|gb|AEE83727.1| RNA binding / abscisic acid binding protein [Arabidopsis thaliana]
Length = 505
Score = 301 bits (772), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 216/427 (50%), Positives = 258/427 (60%), Gaps = 46/427 (10%)
Query: 175 MRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSG 234
MRDE +QSRGCGFVKYS ++ A+AAI+ LNG YTMRGC+QPL VRFA+PKRP+PG+SR
Sbjct: 1 MRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGESREM 60
Query: 235 PTFGGPGFGPRFQPPSPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLP 294
G G GPRFQ PRP NFGD D N W P + RN+GP SN GIRG G+
Sbjct: 61 APPVGLGSGPRFQASGPRPTSNFGDSSGDVSHTNPWRPATSRNVGPPSNTGIRGAGSDFS 120
Query: 295 PRSGDLGMPLNPGGP-------ADVPLPGLAVSSTSSALQQNFCQPESQAPSLGQQISPL 347
P+ G +P N GGP PLP VSS+++ QQN + GQ I+PL
Sbjct: 121 PKPGQATLPSNQGGPLGGYGVPPLNPLPVPGVSSSATLQQQNR--------AAGQHITPL 172
Query: 348 QKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPA 407
+KPL SPQ + PL L PQ PG +QA P Q+ S LP
Sbjct: 173 KKPLHSPQGL-PLPLRPQT---------------NFPG----AQA-PLQNPYAYSSQLPT 211
Query: 408 SQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQQQLHQPYQQSPSQLAQML 467
SQ QQ S +TA TPLNI + +++ T Q P QQQ Q Q PS+LAQ+L
Sbjct: 212 SQLPPQQNISRATAPQTPLNINLRPTTVSSAT--VQFPPRSQQQPLQKMQHPPSELAQLL 269
Query: 468 SQQTQTLQATFQSSQQAFSQLQQQLQLMQPSNQNLPLQQGSQGTKQQSQWAGIAPQTVAS 527
SQQTQ+LQATFQSSQQA SQLQQQ+Q MQ NQNLPL Q + KQ QWAG A VAS
Sbjct: 270 SQQTQSLQATFQSSQQAISQLQQQVQSMQQPNQNLPLSQNGRAGKQ--QWAGSAIPRVAS 327
Query: 528 APASAPAADLPVSTSIGPAAPVSSQTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPE 587
S P + + AAP SQ+V K +WTEHTSPDG+KYYYN +TG SKWEKPE
Sbjct: 328 TTGSTPVSYVQT------AAPAVSQSVGSVKCTWTEHTSPDGFKYYYNGLTGESKWEKPE 381
Query: 588 ELTLFEQ 594
E+ +FE+
Sbjct: 382 EMIVFER 388
Score = 43.1 bits (100), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 91 QQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLG 139
Q +GC F+KY++ E A AI L+ +T+ G P+ VR+A+ +R + G
Sbjct: 7 QSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPG 55
>gi|2204100|emb|CAB05395.1| FCA alpha 2 [Arabidopsis thaliana]
Length = 505
Score = 301 bits (772), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 216/427 (50%), Positives = 258/427 (60%), Gaps = 46/427 (10%)
Query: 175 MRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSG 234
MRDE +QSRGCGFVKYS ++ A+AAI+ LNG YTMRGC+QPL VRFA+PKRP+PG+SR
Sbjct: 1 MRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGESRDM 60
Query: 235 PTFGGPGFGPRFQPPSPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLP 294
G G GPRFQ PRP NFGD D N W P + RN+GP SN GIRG G+
Sbjct: 61 APPVGLGSGPRFQASGPRPTSNFGDSSGDVSHTNPWRPATSRNVGPPSNTGIRGAGSDFS 120
Query: 295 PRSGDLGMPLNPGGP-------ADVPLPGLAVSSTSSALQQNFCQPESQAPSLGQQISPL 347
P+ G +P N GGP PLP VSS+++ QQN + GQ I+PL
Sbjct: 121 PKPGQATLPSNQGGPLGGYGVPPLNPLPVPGVSSSATLQQQNR--------AAGQHITPL 172
Query: 348 QKPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPA 407
+KPL SPQ + PL L PQ PG +QA P Q+ S LP
Sbjct: 173 KKPLHSPQGL-PLPLRPQT---------------NFPG----AQA-PLQNPYAYSSQLPT 211
Query: 408 SQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQQQLHQPYQQSPSQLAQML 467
SQ QQ S +TA TPLNI + +++ T Q P QQQ Q Q PS+LAQ+L
Sbjct: 212 SQLPPQQNISRATAPQTPLNINLRPTTVSSAT--VQFPPRSQQQPLQKMQHPPSELAQLL 269
Query: 468 SQQTQTLQATFQSSQQAFSQLQQQLQLMQPSNQNLPLQQGSQGTKQQSQWAGIAPQTVAS 527
SQQTQ+LQATFQSSQQA SQLQQQ+Q MQ NQNLPL Q + KQ QWAG A VAS
Sbjct: 270 SQQTQSLQATFQSSQQAISQLQQQVQSMQQPNQNLPLSQNGRAGKQ--QWAGSAIPRVAS 327
Query: 528 APASAPAADLPVSTSIGPAAPVSSQTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPE 587
S P + + AAP SQ+V K +WTEHTSPDG+KYYYN +TG SKWEKPE
Sbjct: 328 TTGSTPVSYVQT------AAPAVSQSVGSVKCTWTEHTSPDGFKYYYNGLTGESKWEKPE 381
Query: 588 ELTLFEQ 594
E+ +FE+
Sbjct: 382 EMIVFER 388
Score = 43.1 bits (100), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 91 QQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLG 139
Q +GC F+KY++ E A AI L+ +T+ G P+ VR+A+ +R + G
Sbjct: 7 QSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPG 55
>gi|302819965|ref|XP_002991651.1| hypothetical protein SELMODRAFT_451447 [Selaginella moellendorffii]
gi|300140500|gb|EFJ07222.1| hypothetical protein SELMODRAFT_451447 [Selaginella moellendorffii]
Length = 480
Score = 297 bits (760), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 137/212 (64%), Positives = 167/212 (78%), Gaps = 6/212 (2%)
Query: 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQG---CCFIKYATSEEA 106
++ KLFVGSVP+T E+ +R +FEE+G V+EVA+IKD++TG QQG CCF+KY++ +EA
Sbjct: 40 TYVKLFVGSVPRTITEQQVRSMFEEYGEVLEVAIIKDRRTGHQQGMFCCCFVKYSSRDEA 99
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERERL-GAVEYKLFVGSLNKQATEKEVEEIFSP 165
DRAIR L+NQ TLPGG P+QVRYADGERERL GA+E+KLFVG LNK A+E+E+EE+FSP
Sbjct: 100 DRAIRCLNNQRTLPGGASPVQVRYADGERERLAGAIEHKLFVGCLNKHASEREIEEVFSP 159
Query: 166 YGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKR 225
YGRV+D+Y+MRDE KQSRGC F+KY RDMA AAI ALN +Y MRGCDQPL VRFADPKR
Sbjct: 160 YGRVDDIYVMRDEHKQSRGCAFIKYPSRDMAQAAIAALNDVYIMRGCDQPLAVRFADPKR 219
Query: 226 PRPGDSRS--GPTFGGPGFGPRFQPPSPRPPP 255
P+ GDSR+ P G G R S R P
Sbjct: 220 PKTGDSRNSFSPRHHGSGSNNRSSGHSGRASP 251
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 55/103 (53%), Gaps = 10/103 (9%)
Query: 500 QNLPLQQGSQGTKQQSQWAGIAPQTVASAPASAPAADLPVSTSIGPAAPVSSQTVAPAKS 559
QN+P QQ Q A P + SAP + LP PA P + VAP S
Sbjct: 362 QNIPQQQQHPPVFQPGSIAQQPPSWLLSAPTQLVQSLLPT-----PALPPA--VVAPTTS 414
Query: 560 SWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQQQQQQKPP 602
+WTEH SPDGYKYYYN +T SKWEKP+EL EQQ PP
Sbjct: 415 NWTEHVSPDGYKYYYNSITSESKWEKPDEL---EQQVAPTLPP 454
>gi|255548387|ref|XP_002515250.1| RNA binding protein, putative [Ricinus communis]
gi|223545730|gb|EEF47234.1| RNA binding protein, putative [Ricinus communis]
Length = 564
Score = 295 bits (755), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 150/258 (58%), Positives = 187/258 (72%), Gaps = 5/258 (1%)
Query: 29 SGQKRG--FSGRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKD 86
+G+KRG FSGR G SPD ++ KLFV VP E+I PLFE HG+++EV L +D
Sbjct: 108 NGRKRGRYFSGRPG-SPDHNLDAASVKLFVAPVPIPTTIENICPLFEAHGSIVEVILPRD 166
Query: 87 KKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLF 146
+++GQQQG CF+KYAT EEADRAIRAL+ Q+T+PG V P++VRYAD ERERL V KL+
Sbjct: 167 RRSGQQQGYCFVKYATIEEADRAIRALNGQYTIPGEVHPLKVRYADRERERLCKVVDKLY 226
Query: 147 VGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGI 206
VG +NKQA+++E+EEIFSPYG VEDVY++RD LKQSRGC FVK RD A+AAI AL+G
Sbjct: 227 VGCINKQASKQEIEEIFSPYGHVEDVYIVRDNLKQSRGCAFVKLPDRDKAVAAIKALHGT 286
Query: 207 YTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGPRFQPPSPRPPPNFGDPITDQIP 266
+TMRGCDQPL V+FADPK+ R G+ R F G FGP Q P RP PNF D + +
Sbjct: 287 FTMRGCDQPLIVKFADPKKRRAGELRGNIPFSGQNFGPCSQEPMNRPIPNFCDSMAGGVL 346
Query: 267 QNAWHPM--SPRNMGPLS 282
NA +PM +P N PL+
Sbjct: 347 PNASYPMHETPTNSQPLA 364
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 84/169 (49%), Gaps = 25/169 (14%)
Query: 424 TPLNIKPQSSSLPGGTNQQQLPAPVQQQLHQPYQQSPSQLAQMLSQQTQTLQATFQSSQQ 483
TP N +P + + T P + Q L P +Q P QL QM QQTQ Q QSSQ+
Sbjct: 356 TPTNSQPLAIT---NTLAHSAPQTITQPL-SPVKQPPLQLYQMPLQQTQGPQNLMQSSQE 411
Query: 484 AFSQLQQQLQLMQPSNQNLPLQQGSQGTKQQSQWAGIAPQTVASAPASAPAADLPVSTSI 543
+++ +Q Q ++ QQ S +S +G P PA + TS
Sbjct: 412 TVTEMMKQTQNVE--------QQQSVQIPLESPCSGGHP----------PAVN---DTSA 450
Query: 544 GPAAPVSSQTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLF 592
P S QT P + W+EH+ PDGYKYYYNC+T S+WEKP+E LF
Sbjct: 451 DSLVPPSHQTEDPQECDWSEHSCPDGYKYYYNCMTLESRWEKPDEFILF 499
>gi|168017537|ref|XP_001761304.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687644|gb|EDQ74026.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 160
Score = 274 bits (700), Expect = 1e-70, Method: Composition-based stats.
Identities = 125/160 (78%), Positives = 145/160 (90%)
Query: 51 FAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAI 110
F KLFVGSVP+T E+++RP+F EHGNVIEVA+IKDK+TG QQGCCF+KY+T EEADRAI
Sbjct: 1 FVKLFVGSVPRTITEDEVRPMFAEHGNVIEVAIIKDKRTGNQQGCCFVKYSTVEEADRAI 60
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
RALHNQ TLPGGV P+QVRYADGERERLGAVE+KLFVGSLNKQA+EKE+EE+F PYGRV+
Sbjct: 61 RALHNQKTLPGGVAPVQVRYADGERERLGAVEHKLFVGSLNKQASEKEIEELFLPYGRVD 120
Query: 171 DVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMR 210
DVY+MRDE KQSRGC F+KYS RD A AAINALNG++ M+
Sbjct: 121 DVYIMRDEQKQSRGCAFIKYSQRDHAQAAINALNGVHIMQ 160
Score = 63.2 bits (152), Expect = 5e-07, Method: Composition-based stats.
Identities = 37/87 (42%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINA 202
KLFVGS+ + TE EV +F+ +G V +V +++D+ +GC FVKYS + A AI A
Sbjct: 3 KLFVGSVPRTITEDEVRPMFAEHGNVIEVAIIKDKRTGNQQGCCFVKYSTVEEADRAIRA 62
Query: 203 LNGIYTMRGCDQPLTVRFADPKRPRPG 229
L+ T+ G P+ VR+AD +R R G
Sbjct: 63 LHNQKTLPGGVAPVQVRYADGERERLG 89
>gi|32482057|gb|AAP84375.1| mutant FCA-D1 [Triticum aestivum]
Length = 284
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 116/163 (71%), Positives = 149/163 (91%)
Query: 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADR 108
S + KLFVGSVP+TA E+D+RPLFE+HG+V+EVALI+D+KTG+QQGCCF+KYATSEEA+R
Sbjct: 122 SGYVKLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAER 181
Query: 109 AIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGR 168
AIRALHNQ T+PG +GP+QVRYADGE+ER G++E+KLFV SLNKQAT KE+EE+F+P+G
Sbjct: 182 AIRALHNQCTIPGAMGPVQVRYADGEKERHGSIEHKLFVASLNKQATAKEIEEVFAPFGH 241
Query: 169 VEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRG 211
VEDVY+M+D ++QSRGCGFVK+S ++ ALAA+N+L+G Y MRG
Sbjct: 242 VEDVYIMKDGMRQSRGCGFVKFSSKEPALAAMNSLSGTYIMRG 284
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINA 202
KLFVGS+ + A E +V +F +G V +V L+RD + + +GC FVKY+ + A AI A
Sbjct: 126 KLFVGSVPRTANEDDVRPLFEDHGDVLEVALIRDRKTGEQQGCCFVKYATSEEAERAIRA 185
Query: 203 LNGIYTMRGCDQPLTVRFADPKRPRPG 229
L+ T+ G P+ VR+AD ++ R G
Sbjct: 186 LHNQCTIPGAMGPVQVRYADGEKERHG 212
>gi|449460564|ref|XP_004148015.1| PREDICTED: flowering time control protein FCA-like [Cucumis
sativus]
gi|449522952|ref|XP_004168489.1| PREDICTED: flowering time control protein FCA-like [Cucumis
sativus]
Length = 307
Score = 268 bits (685), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 121/187 (64%), Positives = 149/187 (79%), Gaps = 1/187 (0%)
Query: 68 IRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127
IRPLFE HG+++E+ +++DK TGQQQG CF+KY+TS EADRAIRAL NQ+T PG + PI
Sbjct: 14 IRPLFEVHGDIVEIVILRDKITGQQQGSCFVKYSTSVEADRAIRALDNQYTFPGELTPIN 73
Query: 128 VRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGF 187
V+YAD E++RLG +E KL+VG LNK T++E+EE+FSPYG VED+Y++RD+LKQSRG F
Sbjct: 74 VKYADSEKDRLGVLE-KLYVGCLNKNTTKREIEEVFSPYGFVEDIYIIRDDLKQSRGSAF 132
Query: 188 VKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGPRFQ 247
VKY+ RDMALAAI ALNG +TMRGCDQPL VR ADPK+PR G+ RS G P FG Q
Sbjct: 133 VKYARRDMALAAIKALNGNFTMRGCDQPLIVRLADPKKPRIGEQRSTNVSGSPRFGHHPQ 192
Query: 248 PPSPRPP 254
P P PP
Sbjct: 193 PFRPEPP 199
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KL+VG + K + +I +F +G V ++ +I+D Q +G F+KYA + A AI+A
Sbjct: 89 KLYVGCLNKNTTKREIEEVFSPYGFVEDIYIIRD-DLKQSRGSAFVKYARRDMALAAIKA 147
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLG 139
L+ T+ G P+ VR AD ++ R+G
Sbjct: 148 LNGNFTMRGCDQPLIVRLADPKKPRIG 174
>gi|356503942|ref|XP_003520758.1| PREDICTED: flowering time control protein FCA-like [Glycine max]
Length = 496
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 133/279 (47%), Positives = 176/279 (63%), Gaps = 32/279 (11%)
Query: 5 FRPMSGPRSG--MNYPLPQSLPVPQLSGQKRGFS-GRGGPSPDLVDGSSFAKLFVGSVPK 61
F+P SG +N+ + +SL +KR + G SPD VD S K++V VP+
Sbjct: 32 FQPTPAVDSGYALNHSMARSL-------RKRPWHHSNNGTSPDQVDVS--CKVYVAPVPR 82
Query: 62 TAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPG 121
TA E++IRP+FEEHG ++E+ L+K KKTG +QG CF+KYAT +EADRAI+ L+N++T G
Sbjct: 83 TATEDEIRPVFEEHGTIVEIVLLKHKKTGTRQGSCFVKYATFDEADRAIKVLNNKYTFAG 142
Query: 122 GVGPIQVRYADGERERLGA---------------VEYKLFVGSLNKQATEKEVEEIFSPY 166
P+ V++AD E ERLG V K+FV S+NK+AT K++EEIFSPY
Sbjct: 143 ESYPVVVKFADRELERLGVRGLCRNMEKKDPLEEVADKVFVSSINKEATNKDIEEIFSPY 202
Query: 167 GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
G VED++ K + G FVK+S+R+MALAAI LN +TMRGCD PL VRFADPK+P
Sbjct: 203 GHVEDIF-----FKSTHGYAFVKFSNREMALAAIKGLNKTFTMRGCDHPLIVRFADPKKP 257
Query: 227 RPGDSRSGPTFGGPGFGPRFQPPSPRPPPNFGDPITDQI 265
+ G+SR FGP Q P+ P PNFGD T I
Sbjct: 258 KTGESRGNYLSVNANFGPCSQEPAVWPLPNFGDSNTGGI 296
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 75/155 (48%), Gaps = 22/155 (14%)
Query: 446 APVQQQLHQPYQQSPSQLAQMLSQQTQTLQATFQSSQQAFSQLQQQLQLMQPSNQNLPLQ 505
A V Q P+Q P Q+ S ++QA SSQ +++Q++ S QN+ Q
Sbjct: 323 ATVLQHPFPPHQVHP----QVASMSLGSIQAPKLSSQLFITEVQRESHPADSSVQNIEQQ 378
Query: 506 QGSQGTKQQSQWAGIAPQTVASAPASAPAADLPVSTSIGPAAPVSSQTVAPAKSSWTEHT 565
SQ P S P++ V+ P P SSQ + W+EH
Sbjct: 379 LSSQ-----------LPSQTESNPST-------VTGITPPDMPTSSQDEDFPECDWSEHY 420
Query: 566 SPDGYKYYYNCVTGVSKWEKPEELTLFEQQQQQQK 600
PDG KYYYNCVT S+W+KPEE L+E++ Q+Q+
Sbjct: 421 CPDGDKYYYNCVTCESRWDKPEEYALYEKESQKQQ 455
>gi|118485698|gb|ABK94699.1| unknown [Populus trichocarpa]
Length = 247
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 127/210 (60%), Positives = 151/210 (71%), Gaps = 16/210 (7%)
Query: 8 MSGPRSGMNYPLPQSLPVPQLSGQKRGFSGRGGPSPDLVDGSSFAKLFVGSVPKTAREED 67
MSG N P L P +G+KRG S D DG AKL++ +P+T EE+
Sbjct: 45 MSGE---ANEPFIGGLFRP--NGRKRG----RFHSSDYGDGGVNAKLYIAPIPRTTTEEN 95
Query: 68 IRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127
IR LFEEHG+V+EV L +DK+TGQQQ CF+KYAT EEADRAIRALHNQHT+PG V P +
Sbjct: 96 IRSLFEEHGSVVEVVLPRDKRTGQQQAYCFVKYATFEEADRAIRALHNQHTIPGEVAPFK 155
Query: 128 VRYADGERER-------LGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK 180
VRYADGERER +G KL+VGS+NK A+++E+EEIFSPYG VEDVY+ RDELK
Sbjct: 156 VRYADGERERPVARCSMVGGFVDKLYVGSINKLASKQEIEEIFSPYGHVEDVYIARDELK 215
Query: 181 QSRGCGFVKYSHRDMALAAINALNGIYTMR 210
QSRGC FVK++HRDMALAAI LNG TMR
Sbjct: 216 QSRGCAFVKFAHRDMALAAIKGLNGTLTMR 245
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMAL 197
G V KL++ + + TE+ + +F +G V +V L RD+ Q + FVKY+ + A
Sbjct: 76 GGVNAKLYIAPIPRTTTEENIRSLFEEHGSVVEVVLPRDKRTGQQQAYCFVKYATFEEAD 135
Query: 198 AAINALNGIYTMRGCDQPLTVRFADPKRPRP 228
AI AL+ +T+ G P VR+AD +R RP
Sbjct: 136 RAIRALHNQHTIPGEVAPFKVRYADGERERP 166
>gi|388506964|gb|AFK41548.1| unknown [Medicago truncatula]
Length = 498
Score = 228 bits (581), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 118/276 (42%), Positives = 167/276 (60%), Gaps = 33/276 (11%)
Query: 1 MGGGFRPMSGPRSGMNYPLPQSLPVPQLSGQKRGFSGRGGPSPDLVDGSSFAKLFVGSVP 60
+ GF P P NYP+P+ KR + GP D VD + K++V VP
Sbjct: 37 VDSGFPPPPRPPPNHNYPIPR----------KRQW----GPPQDQVDVTGHVKVYVAPVP 82
Query: 61 KTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLP 120
+TA E D+R +F+ +G ++EV L++DK TG +QG C +KY+T + AD I+AL NQ+T P
Sbjct: 83 RTASEADVRLVFQGYGTIVEVVLLRDKATGVRQGSCLVKYSTFDVADMTIKALSNQYTFP 142
Query: 121 GGVGPIQVRYADGERERLGAVEY--------------KLFVGSLNKQATEKEVEEIFSPY 166
G P+ VR+ D +RER G ++ K++VG +N +A+++E+EEIFSPY
Sbjct: 143 GESSPVVVRFTDRKRERFGLRDFCQNMERRDPPEVVGKVYVGCINNEASKQEIEEIFSPY 202
Query: 167 GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
G +EDV ++R+ R GFVK+ +R+MALAAI L+ +TMRGCDQPL VRFA+PK+P
Sbjct: 203 GHIEDVVVLRN-----RRYGFVKFYNREMALAAIKGLDRTFTMRGCDQPLIVRFAEPKKP 257
Query: 227 RPGDSRSGPTFGGPGFGPRFQPPSPRPPPNFGDPIT 262
R G+ R +GP Q P+ P PNF DP T
Sbjct: 258 RMGELRGNYLPANASYGPSSQEPAAWPLPNFCDPNT 293
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 78/180 (43%), Gaps = 30/180 (16%)
Query: 426 LNIKPQSSSLPGGT------NQQQLPAPVQQQLHQPYQQSPSQLAQMLSQQTQTLQATFQ 479
++I P S LP N Q + VQQQ P Q SQL M + LQA
Sbjct: 298 MHIAPHHSRLPHQQVNAHIPNWQPVATVVQQQF--PPQHVHSQLTSM---PLRPLQAPNL 352
Query: 480 SSQQAFSQLQQQLQLMQPSNQNLPLQQGSQGTKQQSQWAGIAPQTVASAPASAPAADLPV 539
SSQ +++Q+Q QN+ Q SQ Q + + T + + P
Sbjct: 353 SSQPFITEVQRQFHPPDSLVQNIEQQLSSQLPTQTERCNTVVGSTSPDLHTNPQDEEFP- 411
Query: 540 STSIGPAAPVSSQTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQQQQQQ 599
+S W+EH PDG KYYYNCVT S+WEKP E L++++ Q+Q
Sbjct: 412 ------------------ESDWSEHYCPDGNKYYYNCVTCESRWEKPGEYALYDKESQKQ 453
>gi|357511413|ref|XP_003625995.1| FCA-like protein [Medicago truncatula]
gi|355501010|gb|AES82213.1| FCA-like protein [Medicago truncatula]
Length = 569
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 111/246 (45%), Positives = 158/246 (64%), Gaps = 33/246 (13%)
Query: 1 MGGGFRPMSGPRSGMNYPLPQSLPVPQLSGQKRGFSGRGGPSPDLVDGSSFAKLFVGSVP 60
+ GF P P NYP+P+ KR + GP D VD + K++V VP
Sbjct: 37 VDSGFPPPPRPPPNHNYPIPR----------KRQW----GPPQDQVDVTGHVKVYVAPVP 82
Query: 61 KTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLP 120
+TA E D+R +F+ +G ++EV L++DK TG +QG C +KY+T +EAD AI+AL NQ+T P
Sbjct: 83 RTASEADVRLVFQGYGTIVEVVLLRDKATGVRQGSCLVKYSTFDEADMAIKALSNQYTFP 142
Query: 121 GGVGPIQVRYADGERERLGAVEY--------------KLFVGSLNKQATEKEVEEIFSPY 166
G P+ VR+AD +RER G ++ K++VG +N +A+++E+EEIFSPY
Sbjct: 143 GESSPVVVRFADRKRERFGLRDFCQNMERRDPPEVVGKVYVGCINNEASKQEIEEIFSPY 202
Query: 167 GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
G +EDV ++R+ RG GFVK+ +R+MALAAI L+ +TMRGCDQPL VRFA+PK+P
Sbjct: 203 GHIEDVVVLRN-----RGYGFVKFYNREMALAAIKGLDRTFTMRGCDQPLIVRFAEPKKP 257
Query: 227 RPGDSR 232
R G+ R
Sbjct: 258 RMGELR 263
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 130/497 (26%), Positives = 183/497 (36%), Gaps = 88/497 (17%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSR-GCGFVKYSHRDMALAAINA 202
K++V + + A+E +V +F YG + +V L+RD+ R G VKYS D A AI A
Sbjct: 75 KVYVAPVPRTASEADVRLVFQGYGTIVEVVLLRDKATGVRQGSCLVKYSTFDEADMAIKA 134
Query: 203 LNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFG---PRFQPPSPRPPPNFGD 259
L+ YT G P+ VRFAD R FG F R PP G
Sbjct: 135 LSNQYTFPGESSPVVVRFAD---------RKRERFGLRDFCQNMERRDPPEVVGKVYVGC 185
Query: 260 PITDQIPQNAWHPMSP----------RNMG---------PLSNPGIRGFGNQLPPRSGDL 300
+ Q SP RN G ++ I+G R D
Sbjct: 186 INNEASKQEIEEIFSPYGHIEDVVVLRNRGYGFVKFYNREMALAAIKGLDRTFTMRGCDQ 245
Query: 301 GMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQAPSLGQQISPLQKPLQSPQHMPPL 360
+ + P + L +S Q C IS + L
Sbjct: 246 PLIVRFAEPKKPRMGELRFCFLTSFFIQ-LC------------ISVIAGGSNQAALFTWL 292
Query: 361 QLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGN-LPASQPQGQQIASSS 419
++ + S + N L Q +L + + + GN LPA+ G +
Sbjct: 293 SVNDSLTWYESRSGNIELIFCLTCVQALIGLSLAYEKICKLEGNYLPANASYGPS-SQEP 351
Query: 420 TALPTP-----------LNIKPQSSSLPGGT------NQQQLPAPVQQQLHQPYQQSPSQ 462
A P P ++I P S LP N Q + VQQQ P Q SQ
Sbjct: 352 AAWPLPNFCDPNTGGSNMHIAPHHSRLPHQQVNAHIPNWQPVATVVQQQF--PPQHVHSQ 409
Query: 463 LAQMLSQQTQTLQATFQSSQQAFSQLQQQLQLMQPSNQNLPLQQGSQGTKQQSQWAGIAP 522
L M + LQA SSQ +++Q+Q QN+ Q SQ Q + +
Sbjct: 410 LTSM---PLRPLQAPNLSSQPFITEVQRQFHPPDSLVQNIEQQLSSQLPTQTERCNTVVG 466
Query: 523 QTVASAPASAPAADLPVSTSIGPAAPVSSQTVAPAKSSWTEHTSPDGYKYYYNCVTGVSK 582
T + + P +S W+EH PDG KYYYNCVT S+
Sbjct: 467 STSPDLHTNPQDEEFP-------------------ESDWSEHYCPDGNKYYYNCVTCESR 507
Query: 583 WEKPEELTLFEQQQQQQ 599
WEKP E L++++ Q+Q
Sbjct: 508 WEKPGEYALYDKESQKQ 524
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
K++VG + A +++I +F +G++ +V +++++ G F+K+ E A AI+
Sbjct: 180 KVYVGCINNEASKQEIEEIFSPYGHIEDVVVLRNRGYG------FVKFYNREMALAAIKG 233
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLF 146
L T+ G P+ VR+A+ ++ R+G + +
Sbjct: 234 LDRTFTMRGCDQPLIVRFAEPKKPRMGELRFCFL 267
>gi|30690648|ref|NP_850472.1| flowering time control protein-like protein [Arabidopsis thaliana]
gi|50897178|gb|AAT85728.1| At2g47310 [Arabidopsis thaliana]
gi|53793649|gb|AAU93571.1| At2g47310 [Arabidopsis thaliana]
gi|110738579|dbj|BAF01215.1| putative FCA-related protein [Arabidopsis thaliana]
gi|330255732|gb|AEC10826.1| flowering time control protein-like protein [Arabidopsis thaliana]
Length = 512
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 111/217 (51%), Positives = 144/217 (66%), Gaps = 9/217 (4%)
Query: 38 RGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCF 97
R + D DGS AKL+V + KTA E DIR +FE++GNV E+ L KDK TG++ CF
Sbjct: 97 RSQSATDNADGS-IAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCF 155
Query: 98 IKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEY------KLFVGSLN 151
IKY EE + AI AL Q T PG + P++VR+A+ ERER+G KL+V LN
Sbjct: 156 IKYKKVEEGNAAIAALTEQFTFPGEMLPVKVRFAEAERERIGFAPVQLPDNPKLYVRCLN 215
Query: 152 KQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRG 211
KQ T+ EV E+FS YG +ED+Y+ D++K RG FV++S ++MALAAI ALNG++T+RG
Sbjct: 216 KQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKALNGLFTIRG 275
Query: 212 CDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGPRFQP 248
DQPL VRFADPK+PR G+ RS TF P F P
Sbjct: 276 SDQPLIVRFADPKKPRLGEQRS--TFNTPPAMQHFDP 310
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 11/97 (11%)
Query: 551 SQTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFE----QQQQQQKPPVQQP 606
Q ++ W+EHT P+G KYY++C+T S WEKP+E +++E +Q + Q ++ P
Sbjct: 397 DQNTVSSECDWSEHTCPNGNKYYFHCITCESTWEKPDEYSMYERWLKEQTRLQDEKIKSP 456
Query: 607 PSQLHSQVLPAQHIPQTQQVQLQTQLRQQQQQQLQHP 643
P SQ + I ++QV+ QQ +LQ P
Sbjct: 457 PLNNESQ----EAIENSEQVESDV---LQQNGELQQP 486
>gi|297824821|ref|XP_002880293.1| hypothetical protein ARALYDRAFT_483907 [Arabidopsis lyrata subsp.
lyrata]
gi|297326132|gb|EFH56552.1| hypothetical protein ARALYDRAFT_483907 [Arabidopsis lyrata subsp.
lyrata]
Length = 505
Score = 215 bits (547), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 108/217 (49%), Positives = 139/217 (64%), Gaps = 14/217 (6%)
Query: 38 RGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCF 97
R + D DGS AKL+V + KT+ E DIR +FE +GNV E+ L KDK TG + CF
Sbjct: 96 RSQSATDTADGS-IAKLYVAPISKTSTEYDIRQVFETYGNVTEIILPKDKMTGDRAAYCF 154
Query: 98 IKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEY------KLFVGSLN 151
+KY T EE + AI AL Q T PG + P++VR+AD ERER+G KL++ LN
Sbjct: 155 VKYKTVEEGNAAIAALAEQFTFPGEMLPLKVRFADAERERIGFAPVQPPDNPKLYIRCLN 214
Query: 152 KQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRG 211
KQ T+ EV E+FS +G +ED+Y+ D++K SRG FV++S R+MALAAI LNG++TMRG
Sbjct: 215 KQTTKMEVHEVFSRFGIIEDIYMALDDMKISRGYAFVQFSCREMALAAIKGLNGVFTMRG 274
Query: 212 CDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGPRFQP 248
DQPL VRFADPK+PR TF P F P
Sbjct: 275 SDQPLIVRFADPKKPR-------STFNTPPAMQHFDP 304
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 58/117 (49%), Gaps = 20/117 (17%)
Query: 483 QAFSQLQQQLQLMQPSNQNLPLQQGSQGTKQQSQWAGIAPQTVASAPASAPAADLPVSTS 542
QA S++ Q L P QNL Q S+ +++ G Q ++S S P
Sbjct: 343 QAVSEVHQPLHQDIPP-QNLEKHQNSETASVETRRDG---QKISSHSNSFP--------- 389
Query: 543 IGPAAPVSSQTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQQQQQQ 599
Q ++ W+EHT PDG KYY++CVT S WEKPEE ++FE+ ++Q
Sbjct: 390 -------EEQNTVSSECDWSEHTCPDGNKYYFHCVTCESTWEKPEEYSMFERWFEEQ 439
>gi|2275209|gb|AAB63831.1| putative FCA-related protein [Arabidopsis thaliana]
Length = 324
Score = 213 bits (542), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 105/205 (51%), Positives = 138/205 (67%), Gaps = 11/205 (5%)
Query: 38 RGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCF 97
R + D DGS AKL+V + KTA E DIR +FE++GNV E+ L KDK TG++ CF
Sbjct: 97 RSQSATDNADGS-IAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCF 155
Query: 98 IKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEY----------KLFV 147
IKY EE + AI AL Q T PG + P++VR+A+ ERER+G KL+V
Sbjct: 156 IKYKKVEEGNAAIAALTEQFTFPGEMLPVKVRFAEAERERIGKCRCFAPVQLPDNPKLYV 215
Query: 148 GSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIY 207
LNKQ T+ EV E+FS YG +ED+Y+ D++K RG FV++S ++MALAAI ALNG++
Sbjct: 216 RCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKALNGLF 275
Query: 208 TMRGCDQPLTVRFADPKRPRPGDSR 232
T+RG DQPL VRFADPK+PR G+ R
Sbjct: 276 TIRGSDQPLIVRFADPKKPRLGEQR 300
Score = 47.0 bits (110), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVAL-IKDKKTGQQQGCCFIKYATSEEADRAIR 111
KL+V + K + ++ +F +G + ++ + + D K + G F++++ E A AI+
Sbjct: 212 KLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICR--GYAFVQFSCKEMALAAIK 269
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFV 147
AL+ T+ G P+ VR+AD ++ RLG + F+
Sbjct: 270 ALNGLFTIRGSDQPLIVRFADPKKPRLGEQRFYSFL 305
>gi|189306759|gb|ACD86404.1| flowering time control protein [Brassica rapa var. parachinensis]
Length = 333
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 179/379 (47%), Positives = 212/379 (55%), Gaps = 54/379 (14%)
Query: 197 LAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGPRFQPPSPRPPPN 256
+AAI+ LNG YTMRGC+QPL VRFADPKRP+PG+SR G G GPRFQ PRP N
Sbjct: 1 MAAIDGLNGTYTMRGCNQPLIVRFADPKRPKPGESREVAHPVGLGSGPRFQASGPRPTSN 60
Query: 257 FGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNPGG-------P 309
GD D N W PM+ NMGP N GIRG G+ L PR G +P N GG P
Sbjct: 61 LGDLSVDVSHTNPWRPMNSPNMGPPGNTGIRGTGSDLAPRPGQATLPSNQGGPLGGYVVP 120
Query: 310 ADVPLPGLAVSSTSSALQQNFCQPESQAPSLGQQISPLQKPLQSPQHMPPLQLHPQVPSS 369
A PLP VSS++++ QQN GQ +SPLQKPL SPQ +P L P
Sbjct: 121 AINPLP---VSSSATSQQQNR--------GAGQHMSPLQKPLHSPQDVP---LRP----- 161
Query: 370 YSHTQNSHLRQLQIPGQTSFSQALPS-QHLLGMSGNLPASQPQGQQIASSSTALPTPLNI 428
QT+F A S Q+ G S LP SQ + QQ + +TA PLNI
Sbjct: 162 ----------------QTNFPGAQASLQNPYGYSSQLPTSQLRPQQNVTPATAPQAPLNI 205
Query: 429 KPQSSSLPGGTNQQQLPAPVQQQLHQPYQQSPSQLAQMLSQQTQTLQATFQSSQQAFSQL 488
+ + + T+ QL QQ Q Q PS+L Q+LSQQTQTLQATFQSSQQA QL
Sbjct: 206 NLRPTPVSSATD--QLRPRAQQPPPQKMQHPPSELVQLLSQQTQTLQATFQSSQQASFQL 263
Query: 489 QQQLQLMQPSNQNLPLQQGSQGTKQQSQWAGIAPQTVASAPASAPAADLPVSTSIGPAAP 548
QQQ+Q MQ NQNLP GSQ + QWAG A TV S AS P + + AAP
Sbjct: 264 QQQVQSMQQPNQNLP---GSQTGHGKQQWAGSAIPTVVSTTASTPVSYMQT------AAP 314
Query: 549 VSSQTVAPAKSSWTEHTSP 567
++Q+V K +WTEHTSP
Sbjct: 315 AATQSVVSRKCNWTEHTSP 333
>gi|64213752|gb|AAY41232.1| RLS [synthetic construct]
Length = 175
Score = 196 bits (497), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 87/117 (74%), Positives = 106/117 (90%)
Query: 116 QHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLM 175
++TLPG +GPIQVRYADGERER GA+E+KLFV SLNKQAT KE+EEIF+PYG VEDVY+M
Sbjct: 16 RYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATAKEIEEIFAPYGHVEDVYIM 75
Query: 176 RDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
+D ++QSRGCGFVK+S R+ ALAA++AL+G Y MRGC+QPL +RFADPKRPRPG+SR
Sbjct: 76 KDGMRQSRGCGFVKFSSREPALAAMSALSGNYVMRGCEQPLIIRFADPKRPRPGESR 132
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFV S+ K A ++I +F +G+V +V ++KD Q +GC F+K+++ E A A+ A
Sbjct: 44 KLFVASLNKQATAKEIEEIFAPYGHVEDVYIMKDGMR-QSRGCGFVKFSSREPALAAMSA 102
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLG 139
L + + G P+ +R+AD +R R G
Sbjct: 103 LSGNYVMRGCEQPLIIRFADPKRPRPG 129
>gi|359479959|ref|XP_002271329.2| PREDICTED: flowering time control protein FCA-like [Vitis vinifera]
Length = 402
Score = 194 bits (494), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 89/134 (66%), Positives = 106/134 (79%)
Query: 142 EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAIN 201
E KL+VG LNKQA+++E+EEIFSPYG VED++++RD++KQSRGCGFVK S+RDMA+AAIN
Sbjct: 159 EDKLYVGYLNKQASKREIEEIFSPYGIVEDIFIVRDDMKQSRGCGFVKLSNRDMAVAAIN 218
Query: 202 ALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGPRFQPPSPRPPPNFGDPI 261
ALNG Y MRGCDQPL VRFADPK+PR G+SR FGGP FGPR Q P P PN GDP+
Sbjct: 219 ALNGNYVMRGCDQPLIVRFADPKKPRIGESRGHVAFGGPKFGPRSQEPLGWPAPNVGDPM 278
Query: 262 TDQIPQNAWHPMSP 275
Q N +P SP
Sbjct: 279 WRQFLPNPLYPASP 292
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 67/96 (69%), Positives = 80/96 (83%)
Query: 44 DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATS 103
D +G +F KL+VG VP+T EEDIR LFEEHG ++EV L+KDK+TGQQQ CCF+KYAT
Sbjct: 5 DYNEGVAFVKLYVGCVPRTVTEEDIRSLFEEHGKIVEVVLLKDKRTGQQQECCFVKYATM 64
Query: 104 EEADRAIRALHNQHTLPGGVGPIQVRYADGERERLG 139
+EADRAI+AL+NQ TLPGGV I+VRYADGERERL
Sbjct: 65 DEADRAIKALNNQRTLPGGVAAIKVRYADGERERLA 100
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMAL 197
G KL+VG + + TE+++ +F +G++ +V L++D+ Q + C FVKY+ D A
Sbjct: 9 GVAFVKLYVGCVPRTVTEEDIRSLFEEHGKIVEVVLLKDKRTGQQQECCFVKYATMDEAD 68
Query: 198 AAINALNGIYTMRGCDQPLTVRFADPKRPR 227
AI ALN T+ G + VR+AD +R R
Sbjct: 69 RAIKALNNQRTLPGGVAAIKVRYADGERER 98
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KL+VG + K A + +I +F +G V ++ +++D Q +GC F+K + + A AI A
Sbjct: 161 KLYVGYLNKQASKREIEEIFSPYGIVEDIFIVRDD-MKQSRGCGFVKLSNRDMAVAAINA 219
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLG 139
L+ + + G P+ VR+AD ++ R+G
Sbjct: 220 LNGNYVMRGCDQPLIVRFADPKKPRIG 246
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 62/112 (55%), Gaps = 8/112 (7%)
Query: 404 NLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQ-QLPAPVQQQLHQPYQQSPSQ 462
N AS Q Q SS++ P P + +PQ S NQQ +P+ VQQ LH +QQSPSQ
Sbjct: 293 NSTASSCQVMQSNSSASVQPIPAHSQPQVVSQTA--NQQPNVPSAVQQPLH-TWQQSPSQ 349
Query: 463 LAQMLSQQTQTLQATFQSSQQAFSQLQQQLQLMQPSNQNLPLQQGSQGTKQQ 514
Q Q TLQ QS ++A S++Q+QL L P QNL QQ S T QQ
Sbjct: 350 ELQ----QAHTLQKGSQSLKEAVSEIQKQLHLAPPPTQNLEQQQNSHVTTQQ 397
>gi|156101369|ref|XP_001616378.1| RNA-binding protein [Plasmodium vivax Sal-1]
gi|148805252|gb|EDL46651.1| RNA-binding protein, putative [Plasmodium vivax]
Length = 513
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 90/184 (48%), Positives = 125/184 (67%), Gaps = 9/184 (4%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G VPKT EE +RP+FEE G V EV +I+DK T + F+K A+ EAD AIR+
Sbjct: 89 KLFIGRVPKTMEEEQLRPIFEEFGIVKEVVIIRDKITNIHKSSAFVKMASISEADNAIRS 148
Query: 113 LHNQHTLPGGVGPIQVRYADGERERL--------GAVEYKLFVGSLNKQATEKEVEEIFS 164
L+NQ TL +G +QV+YA GE +L G + KLF+GSL K TE+ V+E+FS
Sbjct: 149 LNNQRTLDPQLGSLQVKYASGEIMKLGFPQNIESGVDQAKLFIGSLPKSITEESVKEMFS 208
Query: 165 PYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223
PYG VE+V++M+D +GC FVK+++++ AL AIN+LNG T+ GC +P+ VRFA+P
Sbjct: 209 PYGSVEEVFIMKDNSTGLGKGCSFVKFAYKEQALYAINSLNGKKTLEGCARPVEVRFAEP 268
Query: 224 KRPR 227
K +
Sbjct: 269 KSAK 272
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 57/81 (70%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
AKLF+GS+PK+ EE ++ +F +G+V EV ++KD TG +GC F+K+A E+A AI
Sbjct: 187 AKLFIGSLPKSITEESVKEMFSPYGSVEEVFIMKDNSTGLGKGCSFVKFAYKEQALYAIN 246
Query: 112 ALHNQHTLPGGVGPIQVRYAD 132
+L+ + TL G P++VR+A+
Sbjct: 247 SLNGKKTLEGCARPVEVRFAE 267
Score = 42.7 bits (99), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAA 199
V KLF+G + K E+++ IF +G V++V ++RD++ + FVK + A A
Sbjct: 86 VSIKLFIGRVPKTMEEEQLRPIFEEFGIVKEVVIIRDKITNIHKSSAFVKMASISEADNA 145
Query: 200 INALNGIYTMRGCDQPLTVRFA 221
I +LN T+ L V++A
Sbjct: 146 IRSLNNQRTLDPQLGSLQVKYA 167
>gi|32364102|gb|AAP80202.1| FCA-like protein [Triticum aestivum]
Length = 435
Score = 185 bits (470), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 186/475 (39%), Positives = 233/475 (49%), Gaps = 79/475 (16%)
Query: 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGP 244
CGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRPRPG+SR GP FGGPG
Sbjct: 1 CGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRPRPGESRGGPAFGGPGVSS 60
Query: 245 RFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMP 303
R RP N + I +P ++W P SP +M P FG+ G +G P
Sbjct: 61 RSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ---FNNFGSD--NSMGLMGGP 115
Query: 304 LNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLGQ-------QISPLQKPLQ 352
+ P + + S L P S PSL Q QISPLQKP
Sbjct: 116 VTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLSQGHHLGGPQISPLQKPTG 173
Query: 353 SPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQG 412
PQ+ P+QL + Q L Q G SF Q +P+ L G LP SQP
Sbjct: 174 QPQNS-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIPTMQL---PGRLPVSQPLT 221
Query: 413 QQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLHQPYQQ-SPSQLAQMLSQQ 470
QQ AS+ AL P + QS+ + QQQLP+ V Q L QP QQ +L QQ
Sbjct: 222 QQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQQPVQQMLSQAPQLLLQQQ 278
Query: 471 TQTLQATFQSSQQAF-------------SQLQQQLQLMQPSNQNLPLQQGSQGTKQQSQW 517
+Q++++SSQQ Q QQQ L Q + +P QQG
Sbjct: 279 QAAIQSSYRSSQQTIFQLQQQLQLLQQQQQHQQQPNLNQQPHTQVPKQQG---------- 328
Query: 518 AGIAPQTVASAPASAPAADLPVSTSIGPAAPVSSQTVAPAKS---SWTEHTSPDGYKYYY 574
Q V S APAA + + P Q +PA S +WTEHTSP+G+KYYY
Sbjct: 329 -----QPVQSNTPGAPAAMMTTKINAIP-----QQVNSPAVSLTCNWTEHTSPEGFKYYY 378
Query: 575 NCVTGVSKWEKPEELTLFEQQQQQQKPPVQQPPSQLHSQVLPAQHI---PQTQQV 626
N +T SKWEKPEE L+EQQQQ QK + Q H Q L AQ + PQ Q +
Sbjct: 379 NSITRESKWEKPEEYILYEQQQQHQKLIL----LQQHQQKLVAQQLQSPPQAQTI 429
>gi|32364089|gb|AAP80196.1| FCA-like protein [Triticum aestivum]
Length = 444
Score = 185 bits (469), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 179/441 (40%), Positives = 219/441 (49%), Gaps = 62/441 (14%)
Query: 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGP 244
CGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRPRPG+SR GP FGGPG
Sbjct: 1 CGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRPRPGESRGGPAFGGPGVSS 60
Query: 245 RFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMP 303
R RP N + I +P ++W P SP +M P FG+ G +G P
Sbjct: 61 RSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ---FNNFGSDN--SMGLMGGP 115
Query: 304 LNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLGQ-------QISPLQKPLQ 352
+ P + + S L P S PSL Q QISPLQ+P
Sbjct: 116 VTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLSQGHHLGGPQISPLQRPTG 173
Query: 353 SPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQG 412
PQ+ P+QL + Q L Q G SF Q +P+ L G LPASQP
Sbjct: 174 QPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIPTMQL---PGQLPASQPLT 221
Query: 413 QQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLHQPYQQ---------SPSQ 462
QQ AS+ AL P + QS+ + QQQLP+ V Q L QP QQ Q
Sbjct: 222 QQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQQPVQQMLSQAPQLLLQQQ 278
Query: 463 LAQMLSQQTQTLQATFQSSQQAFSQLQQQLQLMQPSNQNLPLQQGSQGTKQQSQWAGIAP 522
A + S + Q FQ QQ QQQ QP NL Q +Q KQQ
Sbjct: 279 QAAIQSSYQSSQQTIFQLQQQLQLLQQQQQHQQQP---NLNRQPHTQVPKQQG------- 328
Query: 523 QTVASAPASAPAADLPVSTSIGPAAPVSSQTVAPAKS---SWTEHTSPDGYKYYYNCVTG 579
Q V S APAA + + P Q +PA S +WTEHTSP+G+KYYYN +T
Sbjct: 329 QPVQSNTPGAPAAMMMTKINAIP-----QQVNSPAVSLTCNWTEHTSPEGFKYYYNSITR 383
Query: 580 VSKWEKPEELTLFEQQQQQQK 600
SKWEKPEE L+EQQQQ QK
Sbjct: 384 ESKWEKPEEYILYEQQQQHQK 404
>gi|389584459|dbj|GAB67191.1| RNA-binding protein [Plasmodium cynomolgi strain B]
Length = 567
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/184 (48%), Positives = 125/184 (67%), Gaps = 9/184 (4%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G VPK+ EE +RP+FEE G V EV +I+DK T + F+K A+ EAD AIR+
Sbjct: 89 KLFIGRVPKSMEEEQVRPIFEEFGIVKEVVIIRDKITNIHKSSAFVKMASISEADNAIRS 148
Query: 113 LHNQHTLPGGVGPIQVRYADGERERL--------GAVEYKLFVGSLNKQATEKEVEEIFS 164
L+NQ TL +G +QV+YA GE +L G + KLF+GSL K TE+ V+E+FS
Sbjct: 149 LNNQRTLDPQLGSLQVKYASGEIMKLGFPQNIESGVDQAKLFIGSLPKSITEESVKEMFS 208
Query: 165 PYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223
PYG VE+V++M+D +GC FVK+++++ AL AIN+LNG T+ GC +P+ VRFA+P
Sbjct: 209 PYGSVEEVFIMKDNSTGLGKGCSFVKFAYKEQALYAINSLNGKKTLEGCARPVEVRFAEP 268
Query: 224 KRPR 227
K +
Sbjct: 269 KSAK 272
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 60/89 (67%)
Query: 44 DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATS 103
++ G AKLF+GS+PK+ EE ++ +F +G+V EV ++KD TG +GC F+K+A
Sbjct: 179 NIESGVDQAKLFIGSLPKSITEESVKEMFSPYGSVEEVFIMKDNSTGLGKGCSFVKFAYK 238
Query: 104 EEADRAIRALHNQHTLPGGVGPIQVRYAD 132
E+A AI +L+ + TL G P++VR+A+
Sbjct: 239 EQALYAINSLNGKKTLEGCARPVEVRFAE 267
Score = 44.3 bits (103), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAA 199
V KLF+G + K E++V IF +G V++V ++RD++ + FVK + A A
Sbjct: 86 VSIKLFIGRVPKSMEEEQVRPIFEEFGIVKEVVIIRDKITNIHKSSAFVKMASISEADNA 145
Query: 200 INALNGIYTMRGCDQPLTVRFA 221
I +LN T+ L V++A
Sbjct: 146 IRSLNNQRTLDPQLGSLQVKYA 167
>gi|124513886|ref|XP_001350299.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
gi|23615716|emb|CAD52708.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
Length = 509
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/184 (47%), Positives = 122/184 (66%), Gaps = 9/184 (4%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G VPK E+ +RP+FEE+G V EV +I+DK T + F+K A+ EAD AIR
Sbjct: 86 KLFIGRVPKNIEEDQLRPIFEEYGIVNEVVIIRDKITNVHKSSAFVKMASISEADNAIRL 145
Query: 113 LHNQHTLPGGVGPIQVRYADGERERL--------GAVEYKLFVGSLNKQATEKEVEEIFS 164
L+NQ TL +G +QV+YA GE +L G + KLF+GSL K TE ++E+FS
Sbjct: 146 LNNQKTLDAQLGSLQVKYASGELNKLGFPQNIESGVDQAKLFIGSLPKNITEDNIKEMFS 205
Query: 165 PYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223
PYG VE+V++M+D +GC FVK+S+++ AL AI +LNG T+ GC +P+ VRFA+P
Sbjct: 206 PYGTVEEVFIMKDNSTGLGKGCSFVKFSYKEQALYAIKSLNGKKTLEGCTRPVEVRFAEP 265
Query: 224 KRPR 227
K +
Sbjct: 266 KSSK 269
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 57/81 (70%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
AKLF+GS+PK E++I+ +F +G V EV ++KD TG +GC F+K++ E+A AI+
Sbjct: 184 AKLFIGSLPKNITEDNIKEMFSPYGTVEEVFIMKDNSTGLGKGCSFVKFSYKEQALYAIK 243
Query: 112 ALHNQHTLPGGVGPIQVRYAD 132
+L+ + TL G P++VR+A+
Sbjct: 244 SLNGKKTLEGCTRPVEVRFAE 264
>gi|221057576|ref|XP_002261296.1| RNA binding protein [Plasmodium knowlesi strain H]
gi|194247301|emb|CAQ40701.1| RNA binding protein, putative [Plasmodium knowlesi strain H]
Length = 512
Score = 183 bits (464), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 88/184 (47%), Positives = 124/184 (67%), Gaps = 9/184 (4%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G VPK EE +RP+FEE G V EV +I+DK T + F+K A+ EAD AIR+
Sbjct: 88 KLFIGRVPKNMEEEQVRPIFEEFGIVKEVVIIRDKITNIHKSSAFVKMASISEADNAIRS 147
Query: 113 LHNQHTLPGGVGPIQVRYADGERERL--------GAVEYKLFVGSLNKQATEKEVEEIFS 164
L+NQ TL +G +QV+YA GE +L G + KLF+GSL K +E+ V+E+FS
Sbjct: 148 LNNQRTLDPQLGSLQVKYASGEIMKLGFPQNIESGVDQAKLFIGSLPKSISEESVKEMFS 207
Query: 165 PYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223
PYG VE+V++M+D +GC FVK+++++ AL AIN+LNG T+ GC +P+ VRFA+P
Sbjct: 208 PYGSVEEVFIMKDNSTGLGKGCSFVKFAYKEQALYAINSLNGKKTLEGCARPVEVRFAEP 267
Query: 224 KRPR 227
K +
Sbjct: 268 KSAK 271
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 57/81 (70%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
AKLF+GS+PK+ EE ++ +F +G+V EV ++KD TG +GC F+K+A E+A AI
Sbjct: 186 AKLFIGSLPKSISEESVKEMFSPYGSVEEVFIMKDNSTGLGKGCSFVKFAYKEQALYAIN 245
Query: 112 ALHNQHTLPGGVGPIQVRYAD 132
+L+ + TL G P++VR+A+
Sbjct: 246 SLNGKKTLEGCARPVEVRFAE 266
Score = 44.7 bits (104), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAA 199
V KLF+G + K E++V IF +G V++V ++RD++ + FVK + A A
Sbjct: 85 VSIKLFIGRVPKNMEEEQVRPIFEEFGIVKEVVIIRDKITNIHKSSAFVKMASISEADNA 144
Query: 200 INALNGIYTMRGCDQPLTVRFA 221
I +LN T+ L V++A
Sbjct: 145 IRSLNNQRTLDPQLGSLQVKYA 166
>gi|359479768|ref|XP_003632354.1| PREDICTED: CUGBP Elav-like family member 5 isoform 2 [Vitis
vinifera]
Length = 447
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/182 (46%), Positives = 118/182 (64%), Gaps = 7/182 (3%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG VPK E + +F+E V EV +IKDK T +GCCF+ + +EAD+A+ A
Sbjct: 16 KLFVGQVPKNMTEAQLLAMFKEFALVDEVNIIKDKATRASRGCCFVICPSRQEADKAVNA 75
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAV-------EYKLFVGSLNKQATEKEVEEIFSP 165
HN+ TLPG P+QV+YADGE ERLG + E+KLFVG L K +E EV +FS
Sbjct: 76 CHNKRTLPGASSPLQVKYADGELERLGVIFCHPCYPEHKLFVGMLPKNVSEAEVSSLFSK 135
Query: 166 YGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKR 225
YG ++D+ ++R + S+GC F+KY ++ ALAA+ A+NG + M G PL V++AD ++
Sbjct: 136 YGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEK 195
Query: 226 PR 227
R
Sbjct: 196 ER 197
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINA 202
KLFVG + K TE ++ +F + V++V +++D+ + SRGC FV R A A+NA
Sbjct: 16 KLFVGQVPKNMTEAQLLAMFKEFALVDEVNIIKDKATRASRGCCFVICPSRQEADKAVNA 75
Query: 203 LNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTF 237
+ T+ G PL V++AD + R G P +
Sbjct: 76 CHNKRTLPGASSPLQVKYADGELERLGVIFCHPCY 110
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Query: 36 SGRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGC 95
SG G S V+G A LF+ +P+ + ++ F++ G V+ + DK TG +
Sbjct: 345 SGAGASSGGQVEGPPGANLFIYHIPQEFGDHELAHAFQQFGRVLSAKVFVDKATGASKCF 404
Query: 96 CFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERER 137
F+ Y + A AI ++ N L G +Q++ + ++ +
Sbjct: 405 GFVSYDSPASAQSAI-SMMNGCQLGGKKLKVQLKRDNNKQNK 445
>gi|32364075|gb|AAP80189.1| FCA-like protein [Triticum aestivum]
Length = 426
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 178/441 (40%), Positives = 217/441 (49%), Gaps = 59/441 (13%)
Query: 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGP 244
CGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRPRPG+SR GP FGGPG
Sbjct: 1 CGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRPRPGESRGGPAFGGPGVSS 60
Query: 245 RFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMP 303
R RP N + I +P ++W P SP +M P FG+ G +G P
Sbjct: 61 RSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ---FNNFGSD--NSMGLMGGP 115
Query: 304 LNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLGQ-------QISPLQKPLQ 352
+ P + + S L P S PSL Q QISPLQKP
Sbjct: 116 VTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLSQGHHLGGPQISPLQKPTG 173
Query: 353 SPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQG 412
PQ+ P+QL + Q L Q G SF Q +P+ L G LP SQP
Sbjct: 174 PPQNF-PVQLQ--------NAQQGQLHASQPLGPGSFGQNIPTMQL---PGQLPVSQPLT 221
Query: 413 QQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLHQPYQQ---------SPSQ 462
QQ AS+ AL P + QS+ + QQQLP+ V Q L QP QQ Q
Sbjct: 222 QQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQQPVQQMLSQAPQLLLQQQ 278
Query: 463 LAQMLSQQTQTLQATFQSSQQAFSQLQQQLQLMQPSNQNLPLQQGSQGTKQQSQWAGIAP 522
A + S + Q FQ QQ QQQ Q NL Q +Q KQQ Q
Sbjct: 279 QAAIQSSYQSSQQTIFQLQQQLQLLQQQQQQQQHQQQPNLNQQPHTQVPKQQGQ------ 332
Query: 523 QTVASAPASAPAADLPVSTSIGPAAPVSSQTVAPAKS---SWTEHTSPDGYKYYYNCVTG 579
V S APAA + + P Q +PA S +WTEHTSP+G+KYYYN +T
Sbjct: 333 -PVQSNTPGAPAAMMTTKLNAIP-----QQVNSPAVSLTCNWTEHTSPEGFKYYYNSITR 386
Query: 580 VSKWEKPEELTLFEQQQQQQK 600
SKWEKPEE L+EQQQQ QK
Sbjct: 387 ESKWEKPEEYVLYEQQQQHQK 407
>gi|83315537|ref|XP_730836.1| ribonucleoprotein [Plasmodium yoelii yoelii 17XNL]
gi|23490683|gb|EAA22401.1| ribonucleoprotein homolog F21B7.26 - Arabidopsis thaliana, putative
[Plasmodium yoelii yoelii]
Length = 440
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 139/219 (63%), Gaps = 13/219 (5%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G VPK EE +RP+FEE G V EV +I+DK T + F+K A+ EAD AIR+
Sbjct: 16 KLFIGRVPKNYEEEQLRPIFEEFGIVNEVVIIRDKITNIHKSSAFVKMASISEADNAIRS 75
Query: 113 LHNQHTLPGGVGPIQVRYADGERERL--------GAVEYKLFVGSLNKQATEKEVEEIFS 164
L+NQ TL +G +QV+YA GE +L G + KLF+GSL K TE+ ++++FS
Sbjct: 76 LNNQRTLDQQLGSLQVKYASGEVMKLGFPQNVESGVDQAKLFIGSLPKNITEESIKDMFS 135
Query: 165 PYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223
YG VE+V++M+D +GC FVK+++++ AL AI++LNG T+ GC++P+ VRFA+P
Sbjct: 136 VYGSVEEVFIMKDNSTGLGKGCSFVKFAYKEQALYAISSLNGKKTLEGCNRPVEVRFAEP 195
Query: 224 KRPRPGDSRSG--PTFGGP-GFGPRFQPPSPRPPPNFGD 259
K + S+ G P P G P+ P +P N+G+
Sbjct: 196 KSSKQAQSQVGIQPLQNAPHGISPQAHPGTPN-NINYGN 233
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 56/81 (69%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
AKLF+GS+PK EE I+ +F +G+V EV ++KD TG +GC F+K+A E+A AI
Sbjct: 114 AKLFIGSLPKNITEESIKDMFSVYGSVEEVFIMKDNSTGLGKGCSFVKFAYKEQALYAIS 173
Query: 112 ALHNQHTLPGGVGPIQVRYAD 132
+L+ + TL G P++VR+A+
Sbjct: 174 SLNGKKTLEGCNRPVEVRFAE 194
Score = 43.1 bits (100), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAA 199
V KLF+G + K E+++ IF +G V +V ++RD++ + FVK + A A
Sbjct: 13 VSIKLFIGRVPKNYEEEQLRPIFEEFGIVNEVVIIRDKITNIHKSSAFVKMASISEADNA 72
Query: 200 INALNGIYTMRGCDQPLTVRFADPKRPRPG 229
I +LN T+ L V++A + + G
Sbjct: 73 IRSLNNQRTLDQQLGSLQVKYASGEVMKLG 102
>gi|302786984|ref|XP_002975262.1| hypothetical protein SELMODRAFT_442777 [Selaginella moellendorffii]
gi|300156836|gb|EFJ23463.1| hypothetical protein SELMODRAFT_442777 [Selaginella moellendorffii]
Length = 427
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/186 (44%), Positives = 120/186 (64%), Gaps = 9/186 (4%)
Query: 42 SPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYA 101
+PD V KLFVG +PK +E++ P+FEE G V ++ +IKDK T Q +GCCF+ Y+
Sbjct: 7 APDAV------KLFVGQIPKHLTQEELLPIFEEAGAVFDINIIKDKSTKQSRGCCFLTYS 60
Query: 102 TSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEE 161
+ EAD AI HN+ T+ P+QV+YADGE ERL E+KLF+G L K TE EV +
Sbjct: 61 SRSEADNAIDLFHNKKTISPMNSPMQVKYADGELERL---EHKLFIGMLPKSVTEAEVRD 117
Query: 162 IFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221
+FS YG ++++ +++ + ++ C F+KY R+ A A+ ALNGIY M G L V++A
Sbjct: 118 VFSEYGNIKELQVIKGSQQTAKACAFLKYETREEAAGAVEALNGIYRMEGASSALVVKWA 177
Query: 222 DPKRPR 227
D ++ R
Sbjct: 178 DTEKER 183
>gi|82541152|ref|XP_724838.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23479626|gb|EAA16403.1| FCA gamma-related [Plasmodium yoelii yoelii]
Length = 387
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 139/219 (63%), Gaps = 13/219 (5%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G VPK EE +RP+FEE G V EV +I+DK T + F+K A+ EAD AIR+
Sbjct: 87 KLFIGRVPKNYEEEQLRPIFEEFGIVNEVVIIRDKITNIHKSSAFVKMASISEADNAIRS 146
Query: 113 LHNQHTLPGGVGPIQVRYADGERERL--------GAVEYKLFVGSLNKQATEKEVEEIFS 164
L+NQ TL +G +QV+YA GE +L G + KLF+GSL K TE+ ++++FS
Sbjct: 147 LNNQRTLDQQLGSLQVKYASGEVMKLGFPQNVESGVDQAKLFIGSLPKNITEESIKDMFS 206
Query: 165 PYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223
YG VE+V++M+D +GC FVK+++++ AL AI++LNG T+ GC++P+ VRFA+P
Sbjct: 207 VYGSVEEVFIMKDNSTGLGKGCSFVKFAYKEQALYAISSLNGKKTLEGCNRPVEVRFAEP 266
Query: 224 KRPRPGDSRSG--PTFGGP-GFGPRFQPPSPRPPPNFGD 259
K + S+ G P P G P+ P +P N+G+
Sbjct: 267 KSSKQAQSQVGIQPLQNAPHGISPQAHPGTPN-NINYGN 304
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 56/81 (69%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
AKLF+GS+PK EE I+ +F +G+V EV ++KD TG +GC F+K+A E+A AI
Sbjct: 185 AKLFIGSLPKNITEESIKDMFSVYGSVEEVFIMKDNSTGLGKGCSFVKFAYKEQALYAIS 244
Query: 112 ALHNQHTLPGGVGPIQVRYAD 132
+L+ + TL G P++VR+A+
Sbjct: 245 SLNGKKTLEGCNRPVEVRFAE 265
Score = 42.7 bits (99), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAA 199
V KLF+G + K E+++ IF +G V +V ++RD++ + FVK + A A
Sbjct: 84 VSIKLFIGRVPKNYEEEQLRPIFEEFGIVNEVVIIRDKITNIHKSSAFVKMASISEADNA 143
Query: 200 INALNGIYTMRGCDQPLTVRFA 221
I +LN T+ L V++A
Sbjct: 144 IRSLNNQRTLDQQLGSLQVKYA 165
>gi|32364079|gb|AAP80191.1| FCA-like protein [Triticum aestivum]
Length = 439
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 174/434 (40%), Positives = 218/434 (50%), Gaps = 45/434 (10%)
Query: 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGP 244
CGF K+S ++ ALAA+N+L+G Y MRGC+QPL VR ADPKRPRPG+SR GP FGGPG
Sbjct: 1 CGFAKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRSADPKRPRPGESRGGPAFGGPGVSS 60
Query: 245 RFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMP 303
R RP N + I +P ++W P SP +M P FG+ G +G P
Sbjct: 61 RSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ---FNNFGSDN--SMGLMGGP 115
Query: 304 LNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLGQ-------QISPLQKPLQ 352
+ P + + S L P S PSL Q QISPLQKP
Sbjct: 116 VTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLSQGHHLGGPQISPLQKPTG 173
Query: 353 SPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQG 412
PQ+ P+QL + Q L Q G SF Q +P+ L G LP SQP
Sbjct: 174 QPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIPTMQL---PGQLPVSQPLT 221
Query: 413 QQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLHQPYQQ-SPSQLAQMLSQQ 470
QQ AS+ AL P + QS+ + QQQLP+ V Q L QP QQ +L QQ
Sbjct: 222 QQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQQPVQQMLSQAPQLLLQQQ 278
Query: 471 TQTLQATFQSSQQA-FSQLQQQLQLMQPSNQNLPLQQGSQGTKQQSQWAGIAPQTVASAP 529
+Q+++QS QQ F QQ L Q Q QQ + + +Q Q V S
Sbjct: 279 QAAIQSSYQSPQQTIFQLQQQLQLLQQQQQQQQHQQQPNLNQQPHTQVPKQQGQPVQSNT 338
Query: 530 ASAPAADLPVSTSIGPAAPVSSQTVAPAKS---SWTEHTSPDGYKYYYNCVTGVSKWEKP 586
APAA + + P Q +PA S +WTEHTSP+G+KYYYN +T SKWEKP
Sbjct: 339 PGAPAAMMTTKLNAIP-----QQVNSPAVSLTCNWTEHTSPEGFKYYYNSITRESKWEKP 393
Query: 587 EELTLFEQQQQQQK 600
EE L+EQQQQ QK
Sbjct: 394 EEYILYEQQQQHQK 407
>gi|302811484|ref|XP_002987431.1| hypothetical protein SELMODRAFT_269263 [Selaginella moellendorffii]
gi|300144837|gb|EFJ11518.1| hypothetical protein SELMODRAFT_269263 [Selaginella moellendorffii]
Length = 428
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/186 (44%), Positives = 120/186 (64%), Gaps = 9/186 (4%)
Query: 42 SPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYA 101
+PD V KLFVG +PK +E++ P+FEE G V ++ +IKDK T Q +GCCF+ Y+
Sbjct: 7 APDAV------KLFVGQIPKHLTQEELLPIFEEAGAVFDINIIKDKSTKQSRGCCFLTYS 60
Query: 102 TSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEE 161
+ EAD AI HN+ T+ P+QV+YADGE ERL E+KLF+G L K TE EV +
Sbjct: 61 SRSEADNAIDLFHNKKTISPMNSPMQVKYADGELERL---EHKLFIGMLPKSVTEAEVRD 117
Query: 162 IFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221
+FS YG ++++ +++ + ++ C F+KY R+ A A+ ALNGIY M G L V++A
Sbjct: 118 VFSEYGNIKELQVIKGSQQTAKACAFLKYETREEAAGAVEALNGIYRMEGASSALVVKWA 177
Query: 222 DPKRPR 227
D ++ R
Sbjct: 178 DTEKER 183
>gi|225436819|ref|XP_002270390.1| PREDICTED: CUGBP Elav-like family member 5 isoform 1 [Vitis
vinifera]
gi|296086641|emb|CBI32276.3| unnamed protein product [Vitis vinifera]
Length = 437
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 83/175 (47%), Positives = 116/175 (66%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG VPK E + +F+E V EV +IKDK T +GCCF+ + +EAD+A+ A
Sbjct: 16 KLFVGQVPKNMTEAQLLAMFKEFALVDEVNIIKDKATRASRGCCFVICPSRQEADKAVNA 75
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
HN+ TLPG P+QV+YADGE ERL E+KLFVG L K +E EV +FS YG ++D+
Sbjct: 76 CHNKRTLPGASSPLQVKYADGELERL---EHKLFVGMLPKNVSEAEVSSLFSKYGTIKDL 132
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R + S+GC F+KY ++ ALAA+ A+NG + M G PL V++AD ++ R
Sbjct: 133 QILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKER 187
Score = 40.4 bits (93), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Query: 36 SGRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGC 95
SG G S V+G A LF+ +P+ + ++ F++ G V+ + DK TG +
Sbjct: 335 SGAGASSGGQVEGPPGANLFIYHIPQEFGDHELAHAFQQFGRVLSAKVFVDKATGASKCF 394
Query: 96 CFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERER 137
F+ Y + A AI ++ N L G +Q++ + ++ +
Sbjct: 395 GFVSYDSPASAQSAI-SMMNGCQLGGKKLKVQLKRDNNKQNK 435
>gi|32364119|gb|AAP80210.1| FCA-like protein [Triticum aestivum]
Length = 424
Score = 179 bits (455), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 178/441 (40%), Positives = 216/441 (48%), Gaps = 59/441 (13%)
Query: 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGP 244
CGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRPRPG+SR GP FGGPG
Sbjct: 1 CGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRPRPGESRGGPAFGGPGVSS 60
Query: 245 RFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMP 303
R RP N + I +P ++W P SP +M P FG+ G +G P
Sbjct: 61 RSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ---FNNFGSD--NSMGLMGGP 115
Query: 304 LNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLGQ-------QISPLQKPLQ 352
+ P + + S L P S PSL Q QISPLQKP
Sbjct: 116 VTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLSQRHHLGGPQISPLQKPTG 173
Query: 353 SPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQG 412
PQ+ P+QL + Q L Q G SF Q +P+ L G LP SQP
Sbjct: 174 PPQNF-PVQLQ--------NAQQGQLHASQPLGPGSFGQNIPTMQL---PGQLPVSQPLT 221
Query: 413 QQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLHQPYQQ---------SPSQ 462
QQ AS+ AL P + QS+ + QQQLP+ V Q L QP QQ Q
Sbjct: 222 QQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQQPVQQMLSQAPQLLLQQQ 278
Query: 463 LAQMLSQQTQTLQATFQSSQQAFSQLQQQLQLMQPSNQNLPLQQGSQGTKQQSQWAGIAP 522
A + S + Q FQ QQ QQQ Q NL Q +Q KQQ Q
Sbjct: 279 QAAIQSSYQSSQQTIFQLQQQLQLLQQQQQQQQHQQQPNLNQQPHTQVPKQQGQ------ 332
Query: 523 QTVASAPASAPAADLPVSTSIGPAAPVSSQTVAPAKS---SWTEHTSPDGYKYYYNCVTG 579
V S APAA + + P Q +PA S +WTEHTSP+G+KYYYN T
Sbjct: 333 -PVQSNTPGAPAAMMTTKLNAIP-----QQVNSPAVSLTCNWTEHTSPEGFKYYYNSTTR 386
Query: 580 VSKWEKPEELTLFEQQQQQQK 600
SKWEKPEE L+EQQQQ QK
Sbjct: 387 ESKWEKPEEYVLYEQQQQHQK 407
>gi|255559360|ref|XP_002520700.1| RNA binding protein, putative [Ricinus communis]
gi|223540085|gb|EEF41662.1| RNA binding protein, putative [Ricinus communis]
Length = 436
Score = 179 bits (455), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 84/176 (47%), Positives = 117/176 (66%), Gaps = 3/176 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
KLFVG VPK E + +F+E V EV +IKDK T +GCCF+ + +EAD+A+
Sbjct: 15 VKLFVGQVPKHMTEVQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
A HN+ TLPG P+QV+YADGE ERL E+KLFVG L K +E EV E+FS YG ++D
Sbjct: 75 ACHNKKTLPGASSPLQVKYADGELERL---EHKLFVGMLPKNVSEAEVSELFSTYGTIKD 131
Query: 172 VYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++R + S+GC F+KY ++ ALAA+ A+NG + M G PL V++AD ++ R
Sbjct: 132 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKER 187
>gi|356535559|ref|XP_003536312.1| PREDICTED: CUGBP Elav-like family member 1-B-like [Glycine max]
Length = 429
Score = 179 bits (453), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 82/176 (46%), Positives = 120/176 (68%), Gaps = 3/176 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
KLFVG VPK E+++ +F+E V EV +I+DK + +GCCF+ + EEAD+A+
Sbjct: 16 VKLFVGQVPKRMAEDEVLAMFKEFALVDEVNIIRDKASRASRGCCFVICPSREEADKAVN 75
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
A HN+ TLPG P+QV+YADGE ERL E+KLF+G L K +E EV ++FS YG ++D
Sbjct: 76 ACHNKKTLPGASSPLQVKYADGELERL---EHKLFIGMLPKNISEDEVSDLFSMYGTIKD 132
Query: 172 VYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++R + S+GC F+KY ++ ALAA+ A+NG +TM G PL V++AD ++ R
Sbjct: 133 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHTMEGSSVPLVVKWADTEKER 188
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 131 ADGERE-RLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDEL-KQSRGCGFV 188
A+G+ E + KLFVG + K+ E EV +F + V++V ++RD+ + SRGC FV
Sbjct: 3 AEGKEESKFSEESVKLFVGQVPKRMAEDEVLAMFKEFALVDEVNIIRDKASRASRGCCFV 62
Query: 189 KYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
R+ A A+NA + T+ G PL V++AD + R
Sbjct: 63 ICPSREEADKAVNACHNKKTLPGASSPLQVKYADGELER 101
Score = 40.0 bits (92), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEE 105
++G A LF+ +P+ +E++ F+ G V+ + DK TG + F+ Y T E
Sbjct: 338 IEGPPGANLFIYHIPQEYGDEELATTFQPFGRVLSAKIFVDKVTGVSKCFGFVSYDTPEA 397
Query: 106 ADRAIRALH 114
A AI ++
Sbjct: 398 AQSAISTMN 406
>gi|326489549|dbj|BAK01755.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 453
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/276 (38%), Positives = 152/276 (55%), Gaps = 41/276 (14%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
KLFVG VPK E ++ +F++ V EV LIKDK T +GCCF+ + +EAD+A+
Sbjct: 31 VKLFVGQVPKHMTEAELAAMFKDVAVVDEVTLIKDKATKASRGCCFVICPSRDEADKAVN 90
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
A HN+HTLPG P+QV+YADGE ERL E+KLF+G L K + E+ ++FS YG ++D
Sbjct: 91 AYHNKHTLPGAASPLQVKYADGELERL---EHKLFIGMLPKNVADTELTDLFSKYGNIKD 147
Query: 172 VYLMRDELKQSR-GCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPG- 229
+ ++R + S+ GC F+KY ++ A+AAI LNG + + G PL V++AD ++ R
Sbjct: 148 LQILRGSQQTSKAGCAFIKYEMKEQAVAAIEDLNGKHKIEGSSVPLVVKWADTEKERQAR 207
Query: 230 -------------DSRSGP---TFGG--PGFGPRFQPPSPRPPPNFGDPITDQIPQNAWH 271
+ R P FG G+ P++ S +PP +G +
Sbjct: 208 KAQKAQLQSPNMPNGRPMPQSSVFGALQMGYMPQYNGFSYQPPGTYGL---------MQY 258
Query: 272 PMSP-RNMGPLSNPG--------IRGFGNQLPPRSG 298
P+SP +N GP N G IRG +L P SG
Sbjct: 259 PLSPMQNQGPFQNMGQPVNQGNSIRGVNPELSPNSG 294
Score = 39.7 bits (91), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 2/114 (1%)
Query: 23 LPVPQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEV 81
L VP ++ FS R G +G A LF+ +P+ ++++ F+ G VI
Sbjct: 336 LKVPGVNVNSVAFSPRSNGGGQTQTEGPPGANLFIYHIPQEFGDQELSDAFQRFGRVISA 395
Query: 82 ALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGER 135
+ DK TG + F+ Y A AI A+ N L G +Q++ + +
Sbjct: 396 KVFVDKATGSSKCFGFVSYDNPVSAQSAI-AMMNGFQLGGKKLKVQLKRDNNNK 448
>gi|115442121|ref|NP_001045340.1| Os01g0938200 [Oryza sativa Japonica Group]
gi|20160777|dbj|BAB89718.1| putative ribonucleoprotein [Oryza sativa Japonica Group]
gi|20161317|dbj|BAB90241.1| putative ribonucleoprotein [Oryza sativa Japonica Group]
gi|113534871|dbj|BAF07254.1| Os01g0938200 [Oryza sativa Japonica Group]
gi|215704529|dbj|BAG94162.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218189701|gb|EEC72128.1| hypothetical protein OsI_05123 [Oryza sativa Indica Group]
gi|222619840|gb|EEE55972.1| hypothetical protein OsJ_04706 [Oryza sativa Japonica Group]
Length = 460
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/177 (46%), Positives = 119/177 (67%), Gaps = 4/177 (2%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
KLFVG VPK E ++ +F+E V EV +IKDK T +GCCF+ + EEAD+A+
Sbjct: 40 VKLFVGQVPKHMTEAELLAMFQEVAIVDEVTVIKDKATKASRGCCFLICPSREEADKAVN 99
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
A HN+HTLPG P+QV+YADGE ERL E+KLF+G L K T+ E+ ++FS YG ++D
Sbjct: 100 AYHNKHTLPGASSPLQVKYADGELERL---EHKLFIGMLPKNVTDTELTDLFSKYGNIKD 156
Query: 172 VYLMRDELKQSR-GCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++R + S+ GC F+KY ++ A+AAI ALNG + + G PL V++AD ++ R
Sbjct: 157 LQILRGSQQTSKAGCAFLKYETKEQAVAAIEALNGKHKIEGSSVPLVVKWADTEKER 213
>gi|297848560|ref|XP_002892161.1| hypothetical protein ARALYDRAFT_470321 [Arabidopsis lyrata subsp.
lyrata]
gi|297338003|gb|EFH68420.1| hypothetical protein ARALYDRAFT_470321 [Arabidopsis lyrata subsp.
lyrata]
Length = 435
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/182 (46%), Positives = 117/182 (64%), Gaps = 6/182 (3%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
KLFVG VPK E + LF E V EV +IK+K T +GCCF+ + EEAD+ I
Sbjct: 12 VKLFVGQVPKHMTEIQLLTLFSEFSIVDEVNIIKEKTTRVPRGCCFLTCPSREEADKVIN 71
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV------EYKLFVGSLNKQATEKEVEEIFSP 165
HN+ TLPG P+QV+YADGERERL + E+KLFVG L K +E EV+ +FS
Sbjct: 72 GFHNKKTLPGASSPLQVKYADGERERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLFSE 131
Query: 166 YGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKR 225
YG ++D+ ++R L+ S+GC F+KY ++ A+ A+ ALNG + M G + PL V++AD +R
Sbjct: 132 YGTIKDLQILRGSLQTSKGCLFLKYEFKEQAVTAMEALNGRHIMEGANVPLIVKWADTER 191
Query: 226 PR 227
R
Sbjct: 192 ER 193
Score = 46.6 bits (109), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 10/144 (6%)
Query: 14 GMNYPL--PQSL--PVPQLSGQKRGFSGRGGPSPDLV--DGSSFAKLFVGSVPKTAREED 67
G+ YP+ P+ + P P L+ G S G P L+ +G + A LF+ ++P+ +++
Sbjct: 295 GLQYPMAFPRGMVPPRPPLTTVSPGISNNGTSIPSLLQTEGPAGANLFIYNIPREFGDQE 354
Query: 68 IRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127
+ F+ G V+ + DK TG + FI Y + A AI + N L G +Q
Sbjct: 355 LAAAFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM-NGCQLSGKKLKVQ 413
Query: 128 VRYADGERERLGAVEYKLFVGSLN 151
++ +G++++ LF G LN
Sbjct: 414 LKRDNGQQQQSNK---PLFNGLLN 434
>gi|413951358|gb|AFW84007.1| hypothetical protein ZEAMMB73_397161 [Zea mays]
Length = 455
Score = 177 bits (448), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 85/177 (48%), Positives = 115/177 (64%), Gaps = 4/177 (2%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
KLFVG VPK E D+ LF E V EV +IKDK T +GCCF+ + EEAD+A+
Sbjct: 32 VKLFVGQVPKHMAEADLLALFREVAAVDEVTVIKDKATKVSRGCCFVICPSREEADKAVN 91
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
A HN+ TL G P+QV+YADGE ERL E+KLF+G L K T+ E+ ++FS YG V D
Sbjct: 92 AYHNKQTLSGASSPLQVKYADGELERL---EHKLFIGMLPKNVTDTELTDLFSKYGNVTD 148
Query: 172 VYLMRDELKQSR-GCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++R + ++ GC F+KY +D ALAAI ALNG + + G PL V++AD ++ R
Sbjct: 149 LQILRGSQQTNKAGCAFIKYQTKDQALAAIEALNGKHKIEGSSVPLVVKWADTEKER 205
>gi|443691317|gb|ELT93212.1| hypothetical protein CAPTEDRAFT_183838 [Capitella teleta]
Length = 462
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 84/175 (48%), Positives = 117/175 (66%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D+RP+FEE G + E+ ++KD+ TG +GC F+ Y + A +A +A
Sbjct: 18 KLFVGQIPRNLEEKDLRPIFEEFGQIYELTVLKDRFTGMHKGCAFLTYCARDSALKAQQA 77
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E A + KLFVG LNKQ +E+EV ++FSPYG +E+
Sbjct: 78 LHEQKTLPGMNRPIQVKPADSESR---AEDRKLFVGMLNKQQSEEEVRQMFSPYGSIEEC 134
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++RD+ S+GC FVK++ A AAINAL+G TM G L V+FAD ++ R
Sbjct: 135 TILRDQNGNSKGCAFVKFTTHADAQAAINALHGSQTMPGASSSLVVKFADTEKER 189
>gi|356505495|ref|XP_003521526.1| PREDICTED: CUGBP Elav-like family member 1-like [Glycine max]
Length = 431
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 81/176 (46%), Positives = 116/176 (65%), Gaps = 3/176 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
KLFVG VPK E ++ +F+E V EV +IKDK T +GCCF+ + EEAD+A+
Sbjct: 15 VKLFVGQVPKHMTEPELLAMFKEFALVDEVNIIKDKATRASRGCCFVICPSREEADKAVN 74
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
A HN+ TLPG P+QV+YADGE ERL E+KLF+G L K +E E+ +FS YG ++D
Sbjct: 75 ACHNKRTLPGASSPLQVKYADGELERL---EHKLFIGMLPKNVSEVEISALFSKYGTIKD 131
Query: 172 VYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++R + S+GC F+KY ++ AL A+ A+NG + M G PL V++AD ++ R
Sbjct: 132 LQILRGSQQTSKGCAFLKYETKEQALTALEAINGKHKMEGSSVPLVVKWADTEKER 187
>gi|356500250|ref|XP_003518946.1| PREDICTED: CUGBP Elav-like family member 1-like [Glycine max]
Length = 426
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 81/176 (46%), Positives = 116/176 (65%), Gaps = 3/176 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
KLFVG VPK E+++ +F+E V EV +I+DK T +GCCF+ + EEAD+A+
Sbjct: 15 VKLFVGQVPKRMSEDEVLAMFKELALVDEVNIIRDKATRASRGCCFVICPSREEADKAVN 74
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
A HN+ TLPG P+QV+YADGE ERL E+KLF+G L K +E EV +FS YG ++D
Sbjct: 75 ACHNKKTLPGASSPLQVKYADGELERL---EHKLFIGMLPKNISEDEVSNLFSKYGTIKD 131
Query: 172 VYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++R S+GC F+KY ++ A A+ A+NG +TM G PL V++AD ++ R
Sbjct: 132 LQILRGSQHTSKGCAFLKYETKEQAFTALEAINGKHTMEGSSVPLVVKWADTEKER 187
>gi|22329313|ref|NP_171845.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|26449591|dbj|BAC41921.1| putative ribonucleoprotein [Arabidopsis thaliana]
gi|28950997|gb|AAO63422.1| At1g03457 [Arabidopsis thaliana]
gi|332189452|gb|AEE27573.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 429
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 84/176 (47%), Positives = 117/176 (66%), Gaps = 3/176 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
KLFVG VPK E + LF E V EV +IK+K T +GCCF+ T E+AD+ I
Sbjct: 12 VKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVIN 71
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+ HN+ TLPG P+QV+YADGE ERL E+KLFVG L K +E EV+ +FS YG ++D
Sbjct: 72 SFHNKKTLPGASSPLQVKYADGELERL---EHKLFVGMLPKNVSETEVQSLFSEYGTIKD 128
Query: 172 VYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++R L+ S+GC F+KY ++ A+AA+ ALNG + M G + PL V++AD ++ R
Sbjct: 129 LQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWADTEKER 184
Score = 47.4 bits (111), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 10/147 (6%)
Query: 7 PMSGPRSGMNYPLPQSLPVPQLSGQKRGFSGRGG--PSPDLVDGSSFAKLFVGSVPKTAR 64
PM+ PR GM +P LP+ +S G S G PS +G + A LF+ ++P+
Sbjct: 290 PMAFPR-GM---IPPRLPLTTVSP---GISNNGTSIPSSLQTEGPAGANLFIYNIPREFE 342
Query: 65 EEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVG 124
++++ F+ G V+ + DK TG + FI Y + A AI + N L G
Sbjct: 343 DQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM-NGCQLSGKKL 401
Query: 125 PIQVRYADGERERLGAVEYKLFVGSLN 151
+Q++ +G++++ + LF G LN
Sbjct: 402 KVQLKRDNGQQQQQQQSKNPLFNGLLN 428
>gi|168002776|ref|XP_001754089.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694643|gb|EDQ80990.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 429
Score = 175 bits (443), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 105/274 (38%), Positives = 146/274 (53%), Gaps = 18/274 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
KLFVG +PK E+ + +F E G V E+ +IKDK T Q +GCCF+ Y T +EAD+AI
Sbjct: 16 VKLFVGQLPKQMSEQQLVEVFSEAGTVHEINIIKDKLTKQSRGCCFLTYTTRQEADKAIE 75
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
HN+ TL P+QV+YADGE ERL E+KLF+G L K A++ +V +FSPYG +++
Sbjct: 76 IFHNKRTLQPVASPLQVKYADGEMERL---EHKLFIGMLPKGASKADVMAVFSPYGSIKE 132
Query: 172 VYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR---- 227
+ +++ S+GC F+KY ++ A+AAI ALNG++ M G L V++AD ++ R
Sbjct: 133 LSVIKGSQPTSKGCAFLKYETKEQAIAAIEALNGVHRMEGSPSALVVKWADTEKERQARK 192
Query: 228 --PGDSRSGPTFGG---PGFGPRFQPPSPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLS 282
S S P G FG PPP G P Q P+S +
Sbjct: 193 VQKAQSVSSPPIPGQQPSIFGAVPMGYVTAPPPYNGYPY-----QPLVQPISNYAIAYPQ 247
Query: 283 NPGIRGFGNQLPPRSGDLGMPLNPGGPADVPLPG 316
PG+ G +P DL P PA P G
Sbjct: 248 QPGMVGLPTAIPGSQSDL-TAYAPMQPATYPFAG 280
Score = 43.1 bits (100), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P ++++ F GNVI + DK TG + F+ Y T E A AI
Sbjct: 344 ANLFIYHIPPEFGDQELSTAFSSFGNVISAKVFVDKTTGASKCFGFVSYDTPEAAQAAIN 403
Query: 112 ALHNQHTLPGGVGPIQVRYADGERE 136
+ N L G +Q++ +R+
Sbjct: 404 VM-NGFQLSGKRLKVQLKRDTKQRK 427
>gi|9280669|gb|AAF86538.1|AC002560_31 F21B7.8 [Arabidopsis thaliana]
Length = 440
Score = 175 bits (443), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 84/182 (46%), Positives = 118/182 (64%), Gaps = 6/182 (3%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
KLFVG VPK E + LF E V EV +IK+K T +GCCF+ T E+AD+ I
Sbjct: 7 VKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVIN 66
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV------EYKLFVGSLNKQATEKEVEEIFSP 165
+ HN+ TLPG P+QV+YADGE ERL + E+KLFVG L K +E EV+ +FS
Sbjct: 67 SFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLFSE 126
Query: 166 YGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKR 225
YG ++D+ ++R L+ S+GC F+KY ++ A+AA+ ALNG + M G + PL V++AD ++
Sbjct: 127 YGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWADTEK 186
Query: 226 PR 227
R
Sbjct: 187 ER 188
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 17/154 (11%)
Query: 7 PMSGPRSGMNYPLPQSLPVPQLSGQKRGFSGRGGPSPD---------LVDGSSFAKLFVG 57
PM+ PR GM +P LP+ +S G S G P + G + A LF+
Sbjct: 294 PMAFPR-GM---IPPRLPLTTVSP---GISNNGTSIPSSLQTEAISLMFSGPAGANLFIY 346
Query: 58 SVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQH 117
++P+ ++++ F+ G V+ + DK TG + FI Y + A AI + N
Sbjct: 347 NIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM-NGC 405
Query: 118 TLPGGVGPIQVRYADGERERLGAVEYKLFVGSLN 151
L G +Q++ +G++++ + LF G LN
Sbjct: 406 QLSGKKLKVQLKRDNGQQQQQQQSKNPLFNGLLN 439
>gi|42571323|ref|NP_973752.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332189453|gb|AEE27574.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 438
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 84/182 (46%), Positives = 118/182 (64%), Gaps = 6/182 (3%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
KLFVG VPK E + LF E V EV +IK+K T +GCCF+ T E+AD+ I
Sbjct: 12 VKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVIN 71
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV------EYKLFVGSLNKQATEKEVEEIFSP 165
+ HN+ TLPG P+QV+YADGE ERL + E+KLFVG L K +E EV+ +FS
Sbjct: 72 SFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLFSE 131
Query: 166 YGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKR 225
YG ++D+ ++R L+ S+GC F+KY ++ A+AA+ ALNG + M G + PL V++AD ++
Sbjct: 132 YGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWADTEK 191
Query: 226 PR 227
R
Sbjct: 192 ER 193
Score = 47.4 bits (111), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 10/147 (6%)
Query: 7 PMSGPRSGMNYPLPQSLPVPQLSGQKRGFSGRGG--PSPDLVDGSSFAKLFVGSVPKTAR 64
PM+ PR GM +P LP+ +S G S G PS +G + A LF+ ++P+
Sbjct: 299 PMAFPR-GM---IPPRLPLTTVSP---GISNNGTSIPSSLQTEGPAGANLFIYNIPREFE 351
Query: 65 EEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVG 124
++++ F+ G V+ + DK TG + FI Y + A AI + N L G
Sbjct: 352 DQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM-NGCQLSGKKL 410
Query: 125 PIQVRYADGERERLGAVEYKLFVGSLN 151
+Q++ +G++++ + LF G LN
Sbjct: 411 KVQLKRDNGQQQQQQQSKNPLFNGLLN 437
>gi|356572661|ref|XP_003554485.1| PREDICTED: CUGBP Elav-like family member 2-like [Glycine max]
Length = 429
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/176 (46%), Positives = 116/176 (65%), Gaps = 3/176 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
KLFVG VPK E ++ +F+E V EV +IKDK T +GCCF+ + EEAD+A+
Sbjct: 13 VKLFVGQVPKHMTEPELLAMFKEFALVDEVNIIKDKATRASRGCCFLICPSREEADKAVN 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
A HN+ TLPG P+QV+YADGE ERL E+KLF+G L K +E E+ +FS YG ++D
Sbjct: 73 ACHNKKTLPGASSPLQVKYADGELERL---EHKLFIGMLPKNVSEVEISALFSKYGTIKD 129
Query: 172 VYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++R + S+GC F+KY ++ ALAA+ A+NG + M PL V++AD ++ R
Sbjct: 130 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEDSSVPLVVKWADTEKER 185
Score = 39.3 bits (90), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEE 105
V+G A LF+ +P+ ++++ F+ G V+ + DK TG + F+ Y T E
Sbjct: 338 VEGPPGANLFIYHIPQEFGDQELATAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDTPEA 397
Query: 106 ADRAIRALH 114
A AI ++
Sbjct: 398 AQSAISMMN 406
>gi|224128620|ref|XP_002320377.1| predicted protein [Populus trichocarpa]
gi|222861150|gb|EEE98692.1| predicted protein [Populus trichocarpa]
Length = 432
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/176 (45%), Positives = 116/176 (65%), Gaps = 3/176 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
KLFVG VPK E ++ +F++ V EV +IKDK T +GCCF+ + +EAD+A+
Sbjct: 16 VKLFVGQVPKNMTEAELLAMFKDFALVDEVNIIKDKTTRASRGCCFLICPSRQEADKAVN 75
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
A HN+ TLPG P+QV+YADGE ERL E+KLFVG L K +E EV ++FS YG ++D
Sbjct: 76 ACHNKKTLPGASSPLQVKYADGELERL---EHKLFVGMLPKNVSEAEVSDLFSKYGTIKD 132
Query: 172 VYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++R + S+ C F+KY ++ ALAA+ +NG + M G PL V++AD ++ R
Sbjct: 133 LQILRGSQQTSKSCAFLKYETKEQALAALEDINGKHKMEGSSVPLVVKWADTEKER 188
Score = 42.4 bits (98), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%)
Query: 36 SGRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGC 95
SG GG S V+G A LF+ +P+ ++++ FE G V+ + DK TG +
Sbjct: 332 SGVGGSSGVQVEGPPGANLFIYHIPQEFGDQELANAFEAFGKVLSAKVFVDKVTGVSKCF 391
Query: 96 CFIKYATSEEADRAIRALH 114
F+ Y + A AI ++
Sbjct: 392 GFVSYDSPAAAQNAITMMN 410
>gi|32364130|gb|AAP80214.1| FCA-like protein [Triticum aestivum]
Length = 439
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 177/445 (39%), Positives = 216/445 (48%), Gaps = 67/445 (15%)
Query: 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGP 244
CGFVK+S ++ ALAA+N+L+G Y MRG +QPL VRFADPKRPRPG+SR GP FGGPG
Sbjct: 1 CGFVKFSSKEPALAAMNSLSGTYIMRGREQPLIVRFADPKRPRPGESRGGPAFGGPGVSS 60
Query: 245 RFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMP 303
R RP N + I +P ++W P SP +M P FG+ D M
Sbjct: 61 RSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ---FNNFGS-------DNSMG 110
Query: 304 LNPGGPADVPLPGLAVS----STSSALQQNFCQPESQ----APSLGQ-------QISPLQ 348
L GGP + + +L P S PSL Q QISPL+
Sbjct: 111 LM-GGPVTSAADNVTFRPQTFHGNGSLSSQTAVPTSSHMGINPSLSQGHHLGGPQISPLR 169
Query: 349 KPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPAS 408
KP PQ+ P+QL + Q L Q G SF Q +P+ L G LP S
Sbjct: 170 KPTGPPQNF-PVQLQ--------NAQQGQLHASQPLGPGSFGQNIPTMQL---PGQLPVS 217
Query: 409 QPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLHQPYQQ--------- 458
QP QQ AS+ AL P + QS+ + QQQLP+ V Q L QP QQ
Sbjct: 218 QPLTQQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQQPVQQMLSQAPQLL 274
Query: 459 SPSQLAQMLSQQTQTLQATFQSSQQAFSQLQQQLQLMQPSNQNLPLQQGSQGTKQQSQWA 518
Q A + S + Q FQ QQ QQQ Q NL Q +Q KQQ Q
Sbjct: 275 LQQQQAAIQSSYQSSQQTIFQLQQQLQLLQQQQQQQQHQQQPNLNQQPHTQVPKQQGQ-- 332
Query: 519 GIAPQTVASAPASAPAADLPVSTSIGPAAPVSSQTVAPAKS---SWTEHTSPDGYKYYYN 575
V S APAA + + P Q +PA S +WTEHTSP+G+KYYYN
Sbjct: 333 -----PVQSNTPGAPAAMMTTKLNAIP-----QQVNSPAVSLTCNWTEHTSPEGFKYYYN 382
Query: 576 CVTGVSKWEKPEELTLFEQQQQQQK 600
+T SKWEKPEE L+EQQQQ QK
Sbjct: 383 SITRESKWEKPEEYVLYEQQQQHQK 407
>gi|357126722|ref|XP_003565036.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 1
[Brachypodium distachyon]
Length = 450
Score = 173 bits (439), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 82/176 (46%), Positives = 117/176 (66%), Gaps = 4/176 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG VPK E ++ +F E V EV +IKDK T +GCCF+ + +EAD+AI A
Sbjct: 30 KLFVGQVPKHMTEPELLAMFREVAAVDEVTVIKDKATRASRGCCFLICPSRDEADKAINA 89
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
HN+HTLPG P+QV+YADGE ERL E+KLF+G L K + E+ ++FS YG ++D+
Sbjct: 90 YHNKHTLPGASSPLQVKYADGELERL---EHKLFIGMLPKNVEDTELTDLFSEYGNIKDL 146
Query: 173 YLMRDELKQSR-GCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R + S+ GC F+KY ++ A+AAI ALNG + + G PL V++AD ++ R
Sbjct: 147 QILRGSQQTSKAGCAFLKYETKEQAVAAIEALNGKHKIEGSSVPLVVKWADTEKER 202
>gi|449462310|ref|XP_004148884.1| PREDICTED: CUGBP Elav-like family member 2-like [Cucumis sativus]
gi|449491521|ref|XP_004158924.1| PREDICTED: CUGBP Elav-like family member 2-like [Cucumis sativus]
Length = 438
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/176 (46%), Positives = 115/176 (65%), Gaps = 3/176 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
KLFVG VPK E + +F+E V EV +I+DK T +GCCF+ + +EAD+A+
Sbjct: 22 VKLFVGQVPKHMTEPQLLTMFQEFALVDEVNIIRDKTTRASRGCCFVICPSRQEADKAVN 81
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
A HN+ TLPG P+QV+YADGE ERL E+KLF+G L K +E EV +FS YG ++D
Sbjct: 82 ACHNKKTLPGASSPLQVKYADGELERL---EHKLFIGMLPKNVSEDEVSGLFSQYGTIKD 138
Query: 172 VYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++R + S+GC F+KY +D A+AA+ A+NG M G PL V++AD ++ R
Sbjct: 139 LQILRGSQQTSKGCAFLKYETKDQAVAALEAINGKCKMEGSSVPLVVKWADTEKER 194
>gi|224068763|ref|XP_002302819.1| predicted protein [Populus trichocarpa]
gi|222844545|gb|EEE82092.1| predicted protein [Populus trichocarpa]
Length = 396
Score = 172 bits (436), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 80/176 (45%), Positives = 117/176 (66%), Gaps = 3/176 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
KLFVG VPK E+++ +F+E V EV +IKDK T +GCCF+ + +EAD+A+
Sbjct: 19 VKLFVGQVPKHMTEDEVLAMFKEFALVDEVNIIKDKTTRASRGCCFLICPSRQEADKAVN 78
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
A HN+ TLPG P+QV+YADGE ERL E+KLFVG L K +E E+ ++FS YG ++D
Sbjct: 79 ACHNKKTLPGASSPLQVKYADGELERL---EHKLFVGMLPKNVSEAELSDLFSKYGIIKD 135
Query: 172 VYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++R + S+GC F+KY ++ A AA+ +NG + M G PL V++AD ++ R
Sbjct: 136 LQILRGSQQTSKGCAFLKYETKEQAHAALEDINGKHKMEGSSVPLVVKWADTEKER 191
>gi|298710156|emb|CBJ31866.1| trinucleotide repeat containing 4, isoform CRA_d [Ectocarpus
siliculosus]
Length = 494
Score = 172 bits (435), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 90/203 (44%), Positives = 126/203 (62%), Gaps = 5/203 (2%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
GP+ + S KLFVG +PK EED+RP+FEE G + ++A+I+DK +G +GC F+
Sbjct: 32 GPAGLIHKDSDAIKLFVGQIPKHMEEEDLRPVFEEFGEIFDLAVIRDKISGLHRGCAFLT 91
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y AD AI ALH Q L G P+QVR A+G+ E+ E KLFVG K A E E+
Sbjct: 92 YCARVSADAAIAALHGQRRLDRGQNPLQVRPAEGQAEQ----ENKLFVGMAPKSANEDEI 147
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F+PYG + +++++R++ ++GC FVKY+ R AL AI AL+ YTM+G +PL V+
Sbjct: 148 RAVFAPYGTLREIHVIRNQDGTNKGCAFVKYTTRQSALDAIEALHEQYTMQGGPRPLVVK 207
Query: 220 FADPKR-PRPGDSRSGPTFGGPG 241
FAD KR + R G G PG
Sbjct: 208 FADNKRGTQAAAGRLGGLIGSPG 230
>gi|405963038|gb|EKC28647.1| CUG-BP- and ETR-3-like factor 2 [Crassostrea gigas]
Length = 647
Score = 172 bits (435), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 78/187 (41%), Positives = 120/187 (64%), Gaps = 9/187 (4%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
P PD + K+FVG +P++ E D+R +FEE G V ++ +++DK TGQ +GCCF+ +
Sbjct: 61 PDPDAI------KMFVGQIPRSMDENDLRKMFEEFGAVYQLNVLRDKATGQSKGCCFVTF 114
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVE 160
T + A A ALHN T+ G PIQ++ AD E+ E KLFVG ++K+ +E +V+
Sbjct: 115 YTRKAALDAQNALHNIKTMSGMHHPIQMKPADSEKRN---EERKLFVGMISKKCSESDVK 171
Query: 161 EIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220
+F+P+G +ED ++RD+ QSRGC FV Y++R AL AI ++ TM GC P+ V+F
Sbjct: 172 MMFAPFGSIEDCTILRDQNGQSRGCAFVTYANRQSALNAIKNMHHSQTMEGCSSPVVVKF 231
Query: 221 ADPKRPR 227
AD ++ +
Sbjct: 232 ADTQKEK 238
>gi|168043683|ref|XP_001774313.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674305|gb|EDQ60815.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 414
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/260 (37%), Positives = 140/260 (53%), Gaps = 25/260 (9%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
KLFVG +PK E+ + +F E G V E+ +IKDK T +GCCF+ Y T +EAD+AI
Sbjct: 16 VKLFVGQLPKQMSEQQLVEIFSEAGTVNEINIIKDKLTKLSRGCCFLTYTTRQEADKAIE 75
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
HN+ TL P+QV+YADGE ERL E+KLF+G L K A++ +V +FS YG +++
Sbjct: 76 IFHNKRTLQPVASPLQVKYADGEMERL---EHKLFIGMLPKAASKADVTAVFSQYGTIKE 132
Query: 172 VYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR---- 227
+ +++ S+GC F+KY ++ A+AAI ALNG++ M G L V++AD ++ R
Sbjct: 133 LSVIKGSQPTSKGCAFLKYETKEQAVAAIEALNGVHKMEGSPSALVVKWADTEKERQARK 192
Query: 228 --PGDSRSGPTFGGPGFGPRFQPPSPR-----PPPNFGDPITDQIPQNAWHPMSPRNMGP 280
S S P PG P P PPP G ++ PMS M
Sbjct: 193 VQKAQSVSSPPI--PGHQPSIFGAVPMGYVTTPPPYNG---------YSYQPMSNYAMAY 241
Query: 281 LSNPGIRGFGNQLPPRSGDL 300
PG+ G +P D+
Sbjct: 242 PQQPGMVGLPTAIPGTQSDM 261
Score = 42.7 bits (99), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+G + A LF+ +P ++++ F GNVI + DK TG + F+ Y T + A
Sbjct: 324 EGPAGANLFIYHIPPEFGDDELSTAFSSFGNVISAKVFVDKTTGASKCFGFVSYDTPDAA 383
Query: 107 DRAIRALH 114
AI ++
Sbjct: 384 QAAINVMN 391
>gi|269785109|ref|NP_001161510.1| bruno-like protein [Saccoglossus kowalevskii]
gi|268053989|gb|ACY92481.1| bruno-like protein [Saccoglossus kowalevskii]
Length = 485
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 82/176 (46%), Positives = 114/176 (64%), Gaps = 4/176 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D+RPLFEE+G + E+ ++KD+ TG +GC F+ Y + A RA A
Sbjct: 37 KLFVGQIPRNLEEKDLRPLFEEYGRIYELTVLKDRFTGMHKGCAFLTYCDRDSALRAQSA 96
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E A + KLFVG LNKQ TE +V IF P+G++E+
Sbjct: 97 LHEQKTLPGMNRPIQVKPADSESR---AEDRKLFVGMLNKQMTEDDVRAIFQPFGKIEEC 153
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTM-RGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ + ALAAIN +NG T+ +G + V+FAD ++ R
Sbjct: 154 TILRGPDGVSKGCAFVKFGSKQEALAAINNINGSRTLPQGASSAIVVKFADTEKER 209
>gi|357129324|ref|XP_003566314.1| PREDICTED: CUGBP Elav-like family member 2-like [Brachypodium
distachyon]
Length = 459
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 84/186 (45%), Positives = 121/186 (65%), Gaps = 8/186 (4%)
Query: 47 DGS----SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYAT 102
DGS S KLFVG VPK E ++ +F + V EV +I+DK T +GCCF+ +
Sbjct: 30 DGSGREESSVKLFVGQVPKQMTEAELAAMFRDVAIVDEVTVIRDKATKVSRGCCFLICPS 89
Query: 103 SEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEI 162
EEAD+A+ A HN+ TLPG P+QV+YADGE ERL E+KLF+G L K T+ E+ ++
Sbjct: 90 REEADKAVNAYHNKRTLPGAPSPLQVKYADGELERL---EHKLFIGMLPKNVTDAEMTDL 146
Query: 163 FSPYGRVEDVYLMRDELKQSR-GCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221
FS YG ++D+ ++R + S+ GC F+KY ++ A+AAI ALNG + + G PL V++A
Sbjct: 147 FSQYGNIKDLQILRGSQQTSKAGCAFLKYETKEQAMAAIEALNGKHKIEGSSVPLVVKWA 206
Query: 222 DPKRPR 227
D ++ R
Sbjct: 207 DTEKER 212
Score = 39.7 bits (91), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEE 105
++G A LF+ +P+ ++D+ F+ G V+ + DK TG + F+ Y +
Sbjct: 367 IEGPPGANLFIYHIPQEFGDQDLANAFQNFGRVLSAKVFVDKATGASKCFGFVSYDSPAS 426
Query: 106 ADRAIRALHNQHTLPGGVGPIQVRYADGERERL 138
A AI ++ N L G +Q++ + + +L
Sbjct: 427 AQAAI-SMMNGFQLGGKKLKVQLKRDNSKHNKL 458
>gi|326528321|dbj|BAJ93342.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 467
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/179 (45%), Positives = 118/179 (65%), Gaps = 4/179 (2%)
Query: 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRA 109
S KLFVG VPK E ++ +F + V EV +I+DK T +GCCF+ + EEAD+A
Sbjct: 45 SSVKLFVGQVPKLMTEAELAAMFRDVAIVDEVTVIRDKATKASRGCCFLICPSREEADKA 104
Query: 110 IRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRV 169
+ A HN+ TLPG P+QV+YADGE ERL E+KLF+G L K T+ E+ ++FS YG +
Sbjct: 105 VNAYHNKRTLPGAPSPLQVKYADGELERL---EHKLFIGMLPKNVTDVEMTDLFSQYGNI 161
Query: 170 EDVYLMRDELKQSR-GCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+D+ ++R + S+ GC F+KY ++ A+AAI ALNG + + G PL V++AD ++ R
Sbjct: 162 KDLQILRGSQQTSKAGCAFLKYETKEQAVAAIEALNGKHKIEGSSVPLVVKWADTEKER 220
>gi|297809825|ref|XP_002872796.1| hypothetical protein ARALYDRAFT_490251 [Arabidopsis lyrata subsp.
lyrata]
gi|297318633|gb|EFH49055.1| hypothetical protein ARALYDRAFT_490251 [Arabidopsis lyrata subsp.
lyrata]
Length = 444
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 80/176 (45%), Positives = 115/176 (65%), Gaps = 3/176 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
KLFVG +PK E + LF+E V EV +IKDK T +GCCF+ + EEAD+ +
Sbjct: 18 VKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVN 77
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
A HN+ TLPG +QV+YADGE ERL E+KLFVG L K +E EV+ +FS YG ++D
Sbjct: 78 ACHNKKTLPGASSLLQVKYADGELERL---EHKLFVGMLPKNVSEAEVQSLFSKYGTIKD 134
Query: 172 VYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++R + S+GC F+KY ++ A++A+ ++NG + M G PL V++AD +R R
Sbjct: 135 LQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVKWADTERER 190
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G G S +G A LF+ ++P+ ++++ F+ G V+ + DK TG +
Sbjct: 340 GIGLSSVVQTEGPEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFG 399
Query: 97 FIKYATSEEADRAIRALHNQH 117
F+ Y + A AI ++ +H
Sbjct: 400 FVSYDSQAAAQNAIDVMNGRH 420
>gi|156083038|ref|XP_001609003.1| RNA recognition motif. (a.k.a. RRM, RBD, or RNP) domain containing
protein [Babesia bovis T2Bo]
gi|154796253|gb|EDO05435.1| RNA recognition motif. (a.k.a. RRM, RBD, or RNP) domain containing
protein [Babesia bovis]
Length = 420
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 84/213 (39%), Positives = 125/213 (58%), Gaps = 11/213 (5%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFV +PKT E +IR +FEE G+V +V +I+DK T + C F++ + +AD AI+
Sbjct: 25 KLFVARIPKTYEEAEIRKMFEEFGDVKDVVIIRDKATNAHKCCAFVRMVSISQADAAIKR 84
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAV---------EYKLFVGSLNKQATEKEVEEIF 163
L+N + +G + V+YA GE ERLG + KLFVGS+ K A E + EIF
Sbjct: 85 LNNNCVVDTALGAVLVKYASGETERLGFTSLVGEPGVNDAKLFVGSIPKNAEEDLIREIF 144
Query: 164 SPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223
PYG +ED+++M+D+ +GC FVK ++++ L AI +L+G+ + GC +P+ VRFA+
Sbjct: 145 GPYGTLEDIFIMKDQNGAGKGCAFVKMAYKEQGLYAIRSLDGMKQLEGCPRPMEVRFAES 204
Query: 224 KRPRPGDSRSGPTFGGPGFGPRFQPPSPRPPPN 256
K + + PG G QPP P P P
Sbjct: 205 KANKQQNMMMQHQ--MPGRGIIVQPPYPIPTPT 235
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Query: 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEAD 107
G + AKLFVGS+PK A E+ IR +F +G + ++ ++KD + G +GC F+K A E+
Sbjct: 120 GVNDAKLFVGSIPKNAEEDLIREIFGPYGTLEDIFIMKD-QNGAGKGCAFVKMAYKEQGL 178
Query: 108 RAIRALHNQHTLPGGVGPIQVRYADGERER 137
AIR+L L G P++VR+A+ + +
Sbjct: 179 YAIRSLDGMKQLEGCPRPMEVRFAESKANK 208
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQS-RGCGFVKYSHRDMALAA 199
VE KLFV + K E E+ ++F +G V+DV ++RD+ + + C FV+ A AA
Sbjct: 22 VEIKLFVARIPKTYEEAEIRKMFEEFGDVKDVVIIRDKATNAHKCCAFVRMVSISQADAA 81
Query: 200 INALNGIYTMRGCDQPLTVRFADPKRPRPG 229
I LN + + V++A + R G
Sbjct: 82 IKRLNNNCVVDTALGAVLVKYASGETERLG 111
Score = 43.9 bits (102), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P D+ F + G ++ + D+ TG+ +G F+ Y T E A +AI+
Sbjct: 287 ANLFIFHIPNEWTHHDLVHTFSQFGKILSSRIASDRSTGRHKGYAFVSYDTPESAAQAIQ 346
Query: 112 ALHNQHTLPGGVGPIQVRYAD 132
L N T+ G + ++ D
Sbjct: 347 HL-NGFTVLGKRLKVTIKKGD 366
>gi|189241911|ref|XP_971057.2| PREDICTED: similar to bruno-3 CG12478-PA [Tribolium castaneum]
Length = 569
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 83/175 (47%), Positives = 114/175 (65%), Gaps = 2/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D+RP+FEE G + E ++KDK TG +GC F+ Y + E A A A
Sbjct: 125 KLFVGQIPRHLEEDDLRPMFEEFGKIYEFTVLKDKYTGMHKGCAFLTYFSPESALNAQNA 184
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH +HTLPG PIQV+ AD E G + KLFVG L+KQ TE++V ++F+P+G +E+
Sbjct: 185 LHEKHTLPGMNRPIQVKPADSENR--GGKDRKLFVGMLSKQQTEEDVRQLFAPFGTIEEC 242
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVKYS A AAIN+L+G TM G L V+FAD ++ R
Sbjct: 243 TILRGPDGASKGCAFVKYSSHQEAQAAINSLHGSQTMPGASSSLVVKFADTEKER 297
>gi|242087741|ref|XP_002439703.1| hypothetical protein SORBIDRAFT_09g018610 [Sorghum bicolor]
gi|241944988|gb|EES18133.1| hypothetical protein SORBIDRAFT_09g018610 [Sorghum bicolor]
Length = 455
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 116/177 (65%), Gaps = 4/177 (2%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
KLFVG VPK E ++ LF V EV +I+D+ T +GCCF+ + EEAD+A+
Sbjct: 35 VKLFVGQVPKQMSEAELAALFRGVALVDEVTVIRDRATRVSRGCCFVICPSREEADKAVT 94
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
A HN+ TLPG P+QV+YADGE ERL E+KLFVG L K T+ E+ ++FS YG ++D
Sbjct: 95 AYHNKRTLPGASSPLQVKYADGELERL---EHKLFVGMLPKNVTDAEMTDLFSKYGNIKD 151
Query: 172 VYLMRDELKQSR-GCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++R + S+ GC F+KY ++ A+AAI ALNG + + G PL V++AD ++ R
Sbjct: 152 LQILRGSQQTSKAGCAFLKYETKEQAVAAIEALNGTHKIEGSSVPLVVKWADTEKER 208
>gi|18412143|ref|NP_567249.1| RNA-binding protein-defense related 1 [Arabidopsis thaliana]
gi|21536899|gb|AAM61231.1| putative ribonucleoprotein [Arabidopsis thaliana]
gi|222423375|dbj|BAH19660.1| AT4G03110 [Arabidopsis thaliana]
gi|332656872|gb|AEE82272.1| RNA-binding protein-defense related 1 [Arabidopsis thaliana]
Length = 441
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 80/176 (45%), Positives = 115/176 (65%), Gaps = 3/176 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
KLFVG +PK E + LF+E V EV +IKDK T +GCCF+ + EEAD+ +
Sbjct: 18 VKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVN 77
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
A HN+ TLPG +QV+YADGE ERL E+KLFVG L K +E EV+ +FS YG ++D
Sbjct: 78 ACHNKKTLPGANSLLQVKYADGELERL---EHKLFVGMLPKNVSEAEVQSLFSKYGTIKD 134
Query: 172 VYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++R + S+GC F+KY ++ A++A+ ++NG + M G PL V++AD +R R
Sbjct: 135 LQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVKWADTERER 190
Score = 40.4 bits (93), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+G A LF+ ++P+ ++++ F+ G V+ + DK TG + F+ Y + A
Sbjct: 344 EGPEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAA 403
Query: 107 DRAIRALHNQH 117
AI ++ +H
Sbjct: 404 QNAIDMMNGRH 414
>gi|3924594|gb|AAC79095.1| putative ribonucleoprotein [Arabidopsis thaliana]
gi|4262139|gb|AAD14439.1| putative ribonucleoprotein [Arabidopsis thaliana]
gi|7270181|emb|CAB77796.1| putative ribonucleoprotein [Arabidopsis thaliana]
Length = 492
Score = 169 bits (427), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 80/176 (45%), Positives = 115/176 (65%), Gaps = 3/176 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
KLFVG +PK E + LF+E V EV +IKDK T +GCCF+ + EEAD+ +
Sbjct: 18 VKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVN 77
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
A HN+ TLPG +QV+YADGE ERL E+KLFVG L K +E EV+ +FS YG ++D
Sbjct: 78 ACHNKKTLPGANSLLQVKYADGELERL---EHKLFVGMLPKNVSEAEVQSLFSKYGTIKD 134
Query: 172 VYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++R + S+GC F+KY ++ A++A+ ++NG + M G PL V++AD +R R
Sbjct: 135 LQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVKWADTERER 190
Score = 39.7 bits (91), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G G S +G A LF+ ++P+ ++++ F+ G V+ + DK TG +
Sbjct: 334 GIGLSSVVQTEGPEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFG 393
Query: 97 FIKYATSEEADRAIRALHNQH 117
F+ Y + A AI ++ +H
Sbjct: 394 FVSYDSQAAAQNAIDMMNGRH 414
>gi|226492020|ref|NP_001152526.1| LOC100286166 [Zea mays]
gi|195657131|gb|ACG48033.1| RNA binding protein [Zea mays]
Length = 463
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 85/187 (45%), Positives = 115/187 (61%), Gaps = 14/187 (7%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
KLFVG VPK E D+ LF E V EV +IKDK T +GCCF+ + EEAD+A+
Sbjct: 30 VKLFVGQVPKHMAEADLLALFREVAAVDEVTVIKDKATKVSRGCCFVICPSREEADKAVN 89
Query: 112 ALHNQHTLPG----------GVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEE 161
A HN+ TL G P+QV+YADGE ERL E+KLF+G L K T+ E+ +
Sbjct: 90 AYHNKQTLSGVCEHTTNLVLASSPLQVKYADGELERL---EHKLFIGMLPKNVTDTELTD 146
Query: 162 IFSPYGRVEDVYLMRDELKQSR-GCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220
+FS YG V D+ ++R + ++ GC F+KY +D ALAAI ALNG + + G PL V++
Sbjct: 147 LFSKYGNVTDLQILRGSQQTNKAGCAFIKYQTKDQALAAIEALNGKHKIEGSSVPLVVKW 206
Query: 221 ADPKRPR 227
AD ++ R
Sbjct: 207 ADTEKER 213
>gi|320167253|gb|EFW44152.1| RNA binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 461
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 80/180 (44%), Positives = 116/180 (64%), Gaps = 3/180 (1%)
Query: 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEAD 107
G KLFVG VP+T E+D+RP+FEE G V+E+ ++KD+ G +GC F+ YA+ E A
Sbjct: 45 GGEHVKLFVGQVPRTMEEKDLRPVFEEFGPVVELTILKDRFNGLHKGCAFLTYASRESAQ 104
Query: 108 RAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYG 167
A+ ALH L G P+QV+ AD E + A KLF+G +++ A+E E+ ++F YG
Sbjct: 105 LAMAALHGVRVLQGMAHPLQVKPADREEK---AEARKLFLGMISRTASEDELRKVFEMYG 161
Query: 168 RVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ED+ ++R S+GC F+KY R+ A+AAI+AL+G +M GC PL V+FAD R R
Sbjct: 162 DIEDIAVLRQPDGTSKGCAFIKYRWREQAVAAISALHGRISMDGCPAPLIVKFADTDRER 221
>gi|410921164|ref|XP_003974053.1| PREDICTED: CUGBP Elav-like family member 5-like isoform 2 [Takifugu
rubripes]
Length = 500
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 111/175 (63%), Gaps = 2/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D++PLFE+ G + E+ ++KD+ TG +GC F+ Y E A +A A
Sbjct: 79 KLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAIKAQNA 138
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E G + KLFVG LNKQ TE++V +F PYG +E+
Sbjct: 139 LHEQKTLPGMTRPIQVKPADSESR--GGKDRKLFVGMLNKQQTEEDVYRLFEPYGVIEEC 196
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+S A +AI+AL+G TM G L V+FAD + R
Sbjct: 197 TVLRGPDGNSKGCAFVKFSTHTEAQSAISALHGSQTMPGASSSLVVKFADTDKER 251
>gi|30679366|ref|NP_849294.1| RNA-binding protein-defense related 1 [Arabidopsis thaliana]
gi|17529054|gb|AAL38737.1| putative ribonucleoprotein [Arabidopsis thaliana]
gi|332656873|gb|AEE82273.1| RNA-binding protein-defense related 1 [Arabidopsis thaliana]
Length = 439
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/176 (45%), Positives = 115/176 (65%), Gaps = 3/176 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
KLFVG +PK E + LF+E V EV +IKDK T +GCCF+ + EEAD+ +
Sbjct: 18 VKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVN 77
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
A HN+ TLPG +QV+YADGE ERL E+KLFVG L K +E EV+ +FS YG ++D
Sbjct: 78 ACHNKKTLPGANSLLQVKYADGELERL---EHKLFVGMLPKNVSEAEVQSLFSKYGTIKD 134
Query: 172 VYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++R + S+GC F+KY ++ A++A+ ++NG + M G PL V++AD +R R
Sbjct: 135 LQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVKWADTERER 190
>gi|297604406|ref|NP_001055367.2| Os05g0373400 [Oryza sativa Japonica Group]
gi|215707181|dbj|BAG93641.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255676313|dbj|BAF17281.2| Os05g0373400 [Oryza sativa Japonica Group]
Length = 466
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/181 (45%), Positives = 118/181 (65%), Gaps = 4/181 (2%)
Query: 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEAD 107
G KLFVG VPK E+++ +F V EV LI+DK T +GCCF+ + EEAD
Sbjct: 42 GEESVKLFVGQVPKQMTEDELAAMFAAVAVVDEVTLIRDKATKASRGCCFLICPSREEAD 101
Query: 108 RAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYG 167
+A+ A HN+ TLPG P+QV+YADGE ERL E+KLF+G L K T+ E+ ++FS YG
Sbjct: 102 KAVNAYHNKRTLPGASSPLQVKYADGELERL---EHKLFIGMLPKNVTDAEMTDLFSQYG 158
Query: 168 RVEDVYLMRDELKQSR-GCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
++D+ ++R + S+ GC F+KY ++ ALAAI ALNG + + G PL V++AD ++
Sbjct: 159 NIKDLQILRGSQQTSKAGCAFLKYETKEQALAAIEALNGKHKIEGSSVPLVVKWADTEKE 218
Query: 227 R 227
R
Sbjct: 219 R 219
Score = 38.9 bits (89), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEE 105
++G A LF+ +P+ ++D+ F+ G V+ + DK TG + FI Y +
Sbjct: 374 IEGPPGANLFIYHIPQEFGDQDLAGAFQGFGRVLSAKVFVDKATGLSKCFGFISYDSPAS 433
Query: 106 ADRAIRALHNQHTLPGGVGPIQVR 129
A AI ++ N + L G +Q++
Sbjct: 434 AQTAI-SMMNGYQLGGKKLKVQLK 456
>gi|413944942|gb|AFW77591.1| hypothetical protein ZEAMMB73_325553 [Zea mays]
Length = 456
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 114/177 (64%), Gaps = 4/177 (2%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
KLFVG VPK E ++ +F V EV +I+D+ T +GCCF+ + EEAD+A+
Sbjct: 36 VKLFVGQVPKQMSEAELAAMFRSVALVDEVTVIRDRVTRVSRGCCFVICPSREEADKAVT 95
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
HN+ TLPG P+QV+YADGE ERL E+KLFVG L K T E+ ++FS YG ++D
Sbjct: 96 TYHNKRTLPGASSPLQVKYADGELERL---EHKLFVGMLPKNVTHAEMTDLFSKYGNIKD 152
Query: 172 VYLMRDELKQSR-GCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++R + S+ GC F+KY ++ A+AAI ALNG + + G PL V++AD ++ R
Sbjct: 153 LQILRGSQQTSKAGCAFLKYETKEQAVAAIEALNGTHKIEGSSVPLVVKWADTEKER 209
>gi|325562907|gb|ADZ31337.1| cell size RNA recognition motif 2 [synthetic construct]
Length = 103
Score = 166 bits (421), Expect = 3e-38, Method: Composition-based stats.
Identities = 77/103 (74%), Positives = 93/103 (90%)
Query: 123 VGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQS 182
+GPIQVRYADGERER GA+E+KLFV SLNKQAT KE+EEIF+PYG VEDVY+M+D ++QS
Sbjct: 1 MGPIQVRYADGERERHGAIEHKLFVASLNKQATAKEIEEIFAPYGHVEDVYIMKDGMRQS 60
Query: 183 RGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKR 225
RGCGFVK+S R+ ALAA++AL+G Y MRGC+QPL +RFADPKR
Sbjct: 61 RGCGFVKFSSREPALAAMSALSGNYVMRGCEQPLIIRFADPKR 103
Score = 54.7 bits (130), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFV S+ K A ++I +F +G+V +V ++KD Q +GC F+K+++ E A A+ A
Sbjct: 22 KLFVASLNKQATAKEIEEIFAPYGHVEDVYIMKDGMR-QSRGCGFVKFSSREPALAAMSA 80
Query: 113 LHNQHTLPGGVGPIQVRYADGER 135
L + + G P+ +R+AD +R
Sbjct: 81 LSGNYVMRGCEQPLIIRFADPKR 103
>gi|218196669|gb|EEC79096.1| hypothetical protein OsI_19721 [Oryza sativa Indica Group]
Length = 555
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 83/181 (45%), Positives = 118/181 (65%), Gaps = 4/181 (2%)
Query: 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEAD 107
G KLFVG VPK E+++ +F V EV LI+DK T +GCCF+ + EEAD
Sbjct: 42 GEESVKLFVGQVPKQMTEDELAAMFAAVAVVDEVTLIRDKATKASRGCCFLICPSREEAD 101
Query: 108 RAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYG 167
+A+ A HN+ TLPG P+QV+YADGE ERL E+KLF+G L K T+ E+ ++FS YG
Sbjct: 102 KAVNAYHNKRTLPGASSPLQVKYADGELERL---EHKLFIGMLPKNVTDAEMTDLFSQYG 158
Query: 168 RVEDVYLMRDELKQSR-GCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
++D+ ++R + S+ GC F+KY ++ ALAAI ALNG + + G PL V++AD ++
Sbjct: 159 NIKDLQILRGSQQTSKAGCAFLKYETKEQALAAIEALNGKHKIEGSSVPLVVKWADTEKE 218
Query: 227 R 227
R
Sbjct: 219 R 219
>gi|429328279|gb|AFZ80039.1| RNA recognition motif domain containing protein [Babesia equi]
Length = 525
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 114/179 (63%), Gaps = 9/179 (5%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+ +PK+ E +I+ +FEE G V EVA+I+DK T + C F++ + +AD AIR+
Sbjct: 71 KLFLARIPKSYEESEIKKMFEEFGKVKEVAVIRDKNTNAHKCCAFVRMCSISQADAAIRS 130
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAV---------EYKLFVGSLNKQATEKEVEEIF 163
L+NQ + +G +Q++YA GE +RLG + KLFVGSL K E + E+F
Sbjct: 131 LNNQCVVDTALGSVQIKYAVGETDRLGFTSLVGEAGCNDAKLFVGSLPKTVDEAAIRELF 190
Query: 164 SPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
YG ++DVY+M+D+ +GC FVK ++++ L AI +LNG T+ GC +PL VRFA+
Sbjct: 191 KDYGTLDDVYIMKDQAGNGKGCAFVKMAYKEQGLFAIRSLNGKRTLEGCTRPLEVRFAE 249
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Query: 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEAD 107
G + AKLFVGS+PKT E IR LF+++G + +V ++KD + G +GC F+K A E+
Sbjct: 166 GCNDAKLFVGSLPKTVDEAAIRELFKDYGTLDDVYIMKD-QAGNGKGCAFVKMAYKEQGL 224
Query: 108 RAIRALHNQHTLPGGVGPIQVRYAD 132
AIR+L+ + TL G P++VR+A+
Sbjct: 225 FAIRSLNGKRTLEGCTRPLEVRFAE 249
Score = 48.1 bits (113), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQS-RGCGFVKYSHRDMALAA 199
VE KLF+ + K E E++++F +G+V++V ++RD+ + + C FV+ A AA
Sbjct: 68 VEIKLFLARIPKSYEESEIKKMFEEFGKVKEVAVIRDKNTNAHKCCAFVRMCSISQADAA 127
Query: 200 INALN 204
I +LN
Sbjct: 128 IRSLN 132
Score = 39.7 bits (91), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
+ LF+ +P D+ F + G VI + DK TG+ +G F+ Y + A +A+
Sbjct: 426 SNLFIFHIPNEWTYNDLVRSFSQFGRVISARIATDKSTGRHKGYAFVSYDNPDSASQAV- 484
Query: 112 ALHNQHTLPGGVGPIQVRYAD 132
A N T+ G + V+ D
Sbjct: 485 ANMNGFTVLGKRLKVTVKKGD 505
>gi|156352255|ref|XP_001622676.1| predicted protein [Nematostella vectensis]
gi|156209270|gb|EDO30576.1| predicted protein [Nematostella vectensis]
Length = 455
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 79/199 (39%), Positives = 126/199 (63%), Gaps = 4/199 (2%)
Query: 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEE 105
V S+ KLFVG VP+T E+D+RP+FE +G + E+ ++KDK TGQ +GC F+ + + +
Sbjct: 14 VRDSNSVKLFVGQVPRTWEEKDLRPIFEPYGQIYELTILKDKYTGQHKGCAFLTFCSRDA 73
Query: 106 ADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSP 165
+ A + LH + TLPG PIQV+ AD E + + + KLFVG ++K A E+++ +FSP
Sbjct: 74 CNAAQKHLHEKKTLPGMHHPIQVKPADSETK---SDDRKLFVGMISKHAKEEDLRVMFSP 130
Query: 166 YGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKR 225
+G +E++ ++R+ S+GC F+K+++R A AI ++ TM GC PL V+FAD ++
Sbjct: 131 FGTIEELTVLRNADSTSKGCAFIKFANRMQAQNAIATMHNSTTMEGCSSPLVVKFADTEK 190
Query: 226 PRP-GDSRSGPTFGGPGFG 243
+ + FGG FG
Sbjct: 191 EKLQKKMQHLAAFGGMAFG 209
>gi|413944941|gb|AFW77590.1| hypothetical protein ZEAMMB73_325553 [Zea mays]
Length = 435
Score = 166 bits (420), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 114/177 (64%), Gaps = 4/177 (2%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
KLFVG VPK E ++ +F V EV +I+D+ T +GCCF+ + EEAD+A+
Sbjct: 36 VKLFVGQVPKQMSEAELAAMFRSVALVDEVTVIRDRVTRVSRGCCFVICPSREEADKAVT 95
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
HN+ TLPG P+QV+YADGE ERL E+KLFVG L K T E+ ++FS YG ++D
Sbjct: 96 TYHNKRTLPGASSPLQVKYADGELERL---EHKLFVGMLPKNVTHAEMTDLFSKYGNIKD 152
Query: 172 VYLMRDELKQSR-GCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++R + S+ GC F+KY ++ A+AAI ALNG + + G PL V++AD ++ R
Sbjct: 153 LQILRGSQQTSKAGCAFLKYETKEQAVAAIEALNGTHKIEGSSVPLVVKWADTEKER 209
>gi|356571003|ref|XP_003553671.1| PREDICTED: flowering time control protein FCA-like [Glycine max]
Length = 461
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 103/271 (38%), Positives = 138/271 (50%), Gaps = 63/271 (23%)
Query: 5 FRPMSGPRSGMNYPLPQSLPVPQLSGQKRGFS-GRGGPSPDLVDGSSFAKLFVGSVPKTA 63
F+P SG Y L S+ P +KR + G SPD VD S K++V VP+TA
Sbjct: 32 FQPTPAVDSG--YALNHSMARPL---RKRPWHHSNNGTSPDQVDVS--CKVYVAPVPRTA 84
Query: 64 REEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGV 123
E++I +FEEHG ++E+ L+K KKTG +QG CF+KYAT +EADRAI+AL+N++T G
Sbjct: 85 TEDEICTVFEEHGTIVEIVLLKHKKTGTRQGSCFVKYATFDEADRAIKALNNKYTFAGES 144
Query: 124 GPIQVRYADGERERLGA---------------VEYKLFVGSLNKQATEKEVEEIFSPYGR 168
P+ V++AD E ERLG V K+FV S+NK+AT KE+E+IFSPYG
Sbjct: 145 YPVVVKFADRELERLGVRGFCRNMEKKDPLEEVADKVFVSSINKEATNKEIEDIFSPYGH 204
Query: 169 VEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRP 228
VED++ K + G F YS ++N
Sbjct: 205 VEDIF-----FKSTHGIVFTFYSRASFFRGNFLSVNA----------------------- 236
Query: 229 GDSRSGPTFGGPGFGPRFQPPSPRPPPNFGD 259
FGP Q P+ P PNFGD
Sbjct: 237 ------------NFGPCSQEPAVWPLPNFGD 255
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 62/128 (48%), Gaps = 18/128 (14%)
Query: 473 TLQATFQSSQQAFSQLQQQLQLMQPSNQNLPLQQGSQGTKQQSQWAGIAPQTVASAPASA 532
++QA SSQ +++ +Q S QN+ Q SQ P S P++
Sbjct: 311 SIQAPKLSSQPFITEVPRQSHPADSSVQNIEQQLSSQ-----------LPSQTESNPSTV 359
Query: 533 PAADLPVSTSIGPAAPVSSQTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLF 592
LP P S Q + W+EH PDG KYYYNC+T S+W+KPEE L+
Sbjct: 360 TGITLP-------DMPTSPQDEDFPECDWSEHYCPDGDKYYYNCITCESRWDKPEEYALY 412
Query: 593 EQQQQQQK 600
E++ Q+Q+
Sbjct: 413 EKESQKQQ 420
>gi|387542960|gb|AFJ72107.1| CUGBP Elav-like family member 4 isoform 4 [Macaca mulatta]
Length = 447
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 117/203 (57%), Gaps = 5/203 (2%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 27 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYK 144
KD+ TG +GC F+ Y + A +A ALH Q TLPG PIQV+ AD E + K
Sbjct: 87 KDRFTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRG----DRK 142
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALN 204
LFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A AAINAL+
Sbjct: 143 LFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALH 202
Query: 205 GIYTMRGCDQPLTVRFADPKRPR 227
G TM G L V+FAD + R
Sbjct: 203 GSQTMPGASSSLVVKFADTDKER 225
>gi|410921168|ref|XP_003974055.1| PREDICTED: CUGBP Elav-like family member 5-like isoform 4 [Takifugu
rubripes]
Length = 471
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 110/175 (62%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D++PLFE+ G + E+ ++KD+ TG +GC F+ Y E A +A A
Sbjct: 79 KLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAIKAQNA 138
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG LNKQ TE++V +F PYG +E+
Sbjct: 139 LHEQKTLPGMTRPIQVKPADSESR---GEDRKLFVGMLNKQQTEEDVYRLFEPYGVIEEC 195
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+S A +AI+AL+G TM G L V+FAD + R
Sbjct: 196 TVLRGPDGNSKGCAFVKFSTHTEAQSAISALHGSQTMPGASSSLVVKFADTDKER 250
>gi|357126724|ref|XP_003565037.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 2
[Brachypodium distachyon]
Length = 459
Score = 166 bits (419), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 82/185 (44%), Positives = 117/185 (63%), Gaps = 13/185 (7%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG VPK E ++ +F E V EV +IKDK T +GCCF+ + +EAD+AI A
Sbjct: 30 KLFVGQVPKHMTEPELLAMFREVAAVDEVTVIKDKATRASRGCCFLICPSRDEADKAINA 89
Query: 113 LHNQHTLPG---------GVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIF 163
HN+HTLPG P+QV+YADGE ERL E+KLF+G L K + E+ ++F
Sbjct: 90 YHNKHTLPGVCEHSSLVLASSPLQVKYADGELERL---EHKLFIGMLPKNVEDTELTDLF 146
Query: 164 SPYGRVEDVYLMRDELKQSR-GCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
S YG ++D+ ++R + S+ GC F+KY ++ A+AAI ALNG + + G PL V++AD
Sbjct: 147 SEYGNIKDLQILRGSQQTSKAGCAFLKYETKEQAVAAIEALNGKHKIEGSSVPLVVKWAD 206
Query: 223 PKRPR 227
++ R
Sbjct: 207 TEKER 211
>gi|66802807|ref|XP_635247.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|60463542|gb|EAL61727.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 489
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 78/176 (44%), Positives = 116/176 (65%), Gaps = 4/176 (2%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
KLFVG +PK+ EE+I+ LF N+ V+LIK+K T + QGC F+ + EEADRAI
Sbjct: 3 TKLFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRAIE 62
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
LHN G + +QV+YAD E+E+L + KLFVG L + E+++ E+F P+G VED
Sbjct: 63 QLHNSKKFQGVLNNLQVKYADSEQEKLAS---KLFVGMLPRSYEEEQIRELFEPHGVVED 119
Query: 172 VYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++R +S+GCGF+K+ +R+ AL+AI LNG+ + G PL V+FAD ++ +
Sbjct: 120 ICILRGPNSESKGCGFIKFDNRESALSAIATLNGM-KLDGSPNPLVVKFADTEKDK 174
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
+ LFV ++P + D+ LF+++G V+ + DK TG +G F+ Y A+ AI
Sbjct: 403 SNLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSYDNPASANLAIS 462
Query: 112 ALHNQ 116
LH Q
Sbjct: 463 NLHGQ 467
>gi|363744106|ref|XP_003642975.1| PREDICTED: CUGBP, Elav-like family member 4 [Gallus gallus]
Length = 445
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 117/203 (57%), Gaps = 4/203 (1%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G + G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 25 PSTNGHMNGLNHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 84
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYK 144
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E + K
Sbjct: 85 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESR---GEDRK 141
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALN 204
LFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A AAINAL+
Sbjct: 142 LFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALH 201
Query: 205 GIYTMRGCDQPLTVRFADPKRPR 227
G TM G L V+FAD + R
Sbjct: 202 GSQTMPGASSSLVVKFADTDKER 224
>gi|350586085|ref|XP_003127952.3| PREDICTED: CUGBP, Elav-like family member 4 [Sus scrofa]
Length = 448
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 87/203 (42%), Positives = 117/203 (57%), Gaps = 4/203 (1%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 27 PGSTGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYK 144
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E + K
Sbjct: 87 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESR---GEDRK 143
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALN 204
LFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A AAINAL+
Sbjct: 144 LFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALH 203
Query: 205 GIYTMRGCDQPLTVRFADPKRPR 227
G TM G L V+FAD + R
Sbjct: 204 GSQTMPGASSSLVVKFADTDKER 226
>gi|395822988|ref|XP_003784783.1| PREDICTED: CUGBP Elav-like family member 4 isoform 2 [Otolemur
garnettii]
Length = 448
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 87/203 (42%), Positives = 117/203 (57%), Gaps = 4/203 (1%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 27 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYK 144
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E + K
Sbjct: 87 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESR---GEDRK 143
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALN 204
LFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A AAINAL+
Sbjct: 144 LFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALH 203
Query: 205 GIYTMRGCDQPLTVRFADPKRPR 227
G TM G L V+FAD + R
Sbjct: 204 GSQTMPGASSSLVVKFADTDKER 226
>gi|344269052|ref|XP_003406369.1| PREDICTED: CUGBP Elav-like family member 4-like isoform 3
[Loxodonta africana]
Length = 448
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 87/203 (42%), Positives = 117/203 (57%), Gaps = 4/203 (1%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 27 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYK 144
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E + K
Sbjct: 87 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESR---GEDRK 143
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALN 204
LFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A AAINAL+
Sbjct: 144 LFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALH 203
Query: 205 GIYTMRGCDQPLTVRFADPKRPR 227
G TM G L V+FAD + R
Sbjct: 204 GSQTMPGASSSLVVKFADTDKER 226
>gi|187761303|ref|NP_001020260.1| CUGBP Elav-like family member 4 isoform 4 [Homo sapiens]
gi|397520310|ref|XP_003830263.1| PREDICTED: CUGBP Elav-like family member 4 isoform 2 [Pan paniscus]
gi|426385816|ref|XP_004059397.1| PREDICTED: CUGBP Elav-like family member 4 isoform 1 [Gorilla
gorilla gorilla]
gi|28279033|gb|AAH45711.1| BRUNOL4 protein [Homo sapiens]
Length = 448
Score = 165 bits (418), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 87/203 (42%), Positives = 117/203 (57%), Gaps = 4/203 (1%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 27 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYK 144
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E + K
Sbjct: 87 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESR---GEDRK 143
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALN 204
LFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A AAINAL+
Sbjct: 144 LFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALH 203
Query: 205 GIYTMRGCDQPLTVRFADPKRPR 227
G TM G L V+FAD + R
Sbjct: 204 GSQTMPGASSSLVVKFADTDKER 226
>gi|348527714|ref|XP_003451364.1| PREDICTED: CUGBP Elav-like family member 5-like [Oreochromis
niloticus]
Length = 529
Score = 165 bits (418), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 110/175 (62%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D++PLFE+ G + E+ ++KD+ TG +GC F+ Y E A +A A
Sbjct: 79 KLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAIKAQNA 138
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG LNKQ TE++V +F PYG +E+
Sbjct: 139 LHEQKTLPGMTRPIQVKPADSESR---GEDRKLFVGMLNKQQTEEDVYRLFEPYGVIEEC 195
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+S A +AI+AL+G TM G L V+FAD + R
Sbjct: 196 TVLRGPDGNSKGCAFVKFSTHTEAQSAISALHGSQTMPGASSSLVVKFADTDKER 250
>gi|410921162|ref|XP_003974052.1| PREDICTED: CUGBP Elav-like family member 5-like isoform 1 [Takifugu
rubripes]
Length = 528
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 110/175 (62%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D++PLFE+ G + E+ ++KD+ TG +GC F+ Y E A +A A
Sbjct: 79 KLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAIKAQNA 138
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG LNKQ TE++V +F PYG +E+
Sbjct: 139 LHEQKTLPGMTRPIQVKPADSESR---GEDRKLFVGMLNKQQTEEDVYRLFEPYGVIEEC 195
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+S A +AI+AL+G TM G L V+FAD + R
Sbjct: 196 TVLRGPDGNSKGCAFVKFSTHTEAQSAISALHGSQTMPGASSSLVVKFADTDKER 250
>gi|363744101|ref|XP_003642973.1| PREDICTED: CUGBP, Elav-like family member 4 [Gallus gallus]
Length = 472
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 117/203 (57%), Gaps = 4/203 (1%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G + G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 25 PSTNGHMNGLNHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 84
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYK 144
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E + K
Sbjct: 85 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESR---GEDRK 141
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALN 204
LFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A AAINAL+
Sbjct: 142 LFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALH 201
Query: 205 GIYTMRGCDQPLTVRFADPKRPR 227
G TM G L V+FAD + R
Sbjct: 202 GSQTMPGASSSLVVKFADTDKER 224
>gi|410921166|ref|XP_003974054.1| PREDICTED: CUGBP Elav-like family member 5-like isoform 3 [Takifugu
rubripes]
Length = 491
Score = 165 bits (417), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 110/175 (62%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D++PLFE+ G + E+ ++KD+ TG +GC F+ Y E A +A A
Sbjct: 79 KLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAIKAQNA 138
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG LNKQ TE++V +F PYG +E+
Sbjct: 139 LHEQKTLPGMTRPIQVKPADSESR---GEDRKLFVGMLNKQQTEEDVYRLFEPYGVIEEC 195
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+S A +AI+AL+G TM G L V+FAD + R
Sbjct: 196 TVLRGPDGNSKGCAFVKFSTHTEAQSAISALHGSQTMPGASSSLVVKFADTDKER 250
>gi|325189112|emb|CCA23638.1| CUGBP and ETR3like factor putative [Albugo laibachii Nc14]
Length = 550
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 120/182 (65%), Gaps = 3/182 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G VP+T E ++ P+ E G V+++ +I+DK TG +GC F +A+ E+A+RA+
Sbjct: 77 KLFIGQVPRTMTETELLPILEAFGEVVDLTIIRDKLTGSHRGCAFASFASPEDAERAVEE 136
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LHN+ TLP + P+QVR A+G+ A E+KLF+G + K ATE+ + +IF +G +++V
Sbjct: 137 LHNKVTLPDSINPLQVRPAEGQAG--AAQEHKLFIGMIPKTATEQAIYDIFGEFGPIDEV 194
Query: 173 YLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDS 231
+++R + QS+GC F+K+ R+ A+A+I LNG TM PL V+FAD +R R
Sbjct: 195 FILRHQPTGQSKGCAFLKFKERESAVASIEQLNGKITMMNGVSPLVVKFADSRRQRLQRV 254
Query: 232 RS 233
RS
Sbjct: 255 RS 256
>gi|363744110|ref|XP_003642977.1| PREDICTED: CUGBP, Elav-like family member 4 [Gallus gallus]
Length = 465
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 117/203 (57%), Gaps = 4/203 (1%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G + G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 25 PSTNGHMNGLNHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 84
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYK 144
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E + K
Sbjct: 85 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESR---GEDRK 141
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALN 204
LFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A AAINAL+
Sbjct: 142 LFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALH 201
Query: 205 GIYTMRGCDQPLTVRFADPKRPR 227
G TM G L V+FAD + R
Sbjct: 202 GSQTMPGASSSLVVKFADTDKER 224
Score = 40.0 bits (92), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 120 PGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE- 178
P P+Q YA G ++ G LF+ L ++ + E+ ++F P+G V + D
Sbjct: 358 PTAADPLQQAYA-GVQQYAGPEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRA 416
Query: 179 LKQSRGCGFVKYSHRDMALAAINALNGI 206
QS+ GFV + + A AAI A+NG
Sbjct: 417 TNQSKCFGFVSFDNPASAQAAIQAMNGF 444
>gi|118103583|ref|XP_424495.2| PREDICTED: CUGBP, Elav-like family member 4 isoform 3 [Gallus
gallus]
Length = 492
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 117/203 (57%), Gaps = 4/203 (1%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G + G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 25 PSTNGHMNGLNHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 84
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYK 144
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E + K
Sbjct: 85 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESR---GEDRK 141
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALN 204
LFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A AAINAL+
Sbjct: 142 LFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALH 201
Query: 205 GIYTMRGCDQPLTVRFADPKRPR 227
G TM G L V+FAD + R
Sbjct: 202 GSQTMPGASSSLVVKFADTDKER 224
>gi|118103585|ref|XP_001231286.1| PREDICTED: CUGBP, Elav-like family member 4 isoform 1 [Gallus
gallus]
Length = 504
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 120/213 (56%), Gaps = 4/213 (1%)
Query: 16 NYPLPQSLPVPQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEE 74
N L + P +G G + G PS + KLF+G +P+ E+D++PLFEE
Sbjct: 15 NTSLSSNHSNPSTNGHMNGLNHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEE 74
Query: 75 HGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGE 134
G + E+ ++KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E
Sbjct: 75 FGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE 134
Query: 135 RERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRD 194
+ KLFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS
Sbjct: 135 SR---GEDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHA 191
Query: 195 MALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
A AAINAL+G TM G L V+FAD + R
Sbjct: 192 EAQAAINALHGSQTMPGASSSLVVKFADTDKER 224
>gi|75075903|sp|Q4R535.1|CELF4_MACFA RecName: Full=CUGBP Elav-like family member 4; Short=CELF-4;
AltName: Full=Bruno-like protein 4; AltName:
Full=CUG-BP- and ETR-3-like factor 4; AltName:
Full=RNA-binding protein BRUNOL-4
gi|67970896|dbj|BAE01790.1| unnamed protein product [Macaca fascicularis]
Length = 474
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/203 (42%), Positives = 117/203 (57%), Gaps = 5/203 (2%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 27 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYK 144
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E + K
Sbjct: 87 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRG----DRK 142
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALN 204
LFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A AAINAL+
Sbjct: 143 LFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALH 202
Query: 205 GIYTMRGCDQPLTVRFADPKRPR 227
G TM G L V+FAD + R
Sbjct: 203 GSQTMPGASSSLVVKFADTDKER 225
>gi|363744104|ref|XP_003642974.1| PREDICTED: CUGBP, Elav-like family member 4 [Gallus gallus]
Length = 491
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 117/203 (57%), Gaps = 4/203 (1%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G + G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 25 PSTNGHMNGLNHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 84
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYK 144
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E + K
Sbjct: 85 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESR---GEDRK 141
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALN 204
LFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A AAINAL+
Sbjct: 142 LFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALH 201
Query: 205 GIYTMRGCDQPLTVRFADPKRPR 227
G TM G L V+FAD + R
Sbjct: 202 GSQTMPGASSSLVVKFADTDKER 224
>gi|449514107|ref|XP_002187309.2| PREDICTED: CUGBP, Elav-like family member 4 isoform 1 [Taeniopygia
guttata]
Length = 492
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 117/203 (57%), Gaps = 5/203 (2%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G + G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 25 PSTNGHMNGLNHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 84
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYK 144
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E + K
Sbjct: 85 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRG----DRK 140
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALN 204
LFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A AAINAL+
Sbjct: 141 LFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALH 200
Query: 205 GIYTMRGCDQPLTVRFADPKRPR 227
G TM G L V+FAD + R
Sbjct: 201 GSQTMPGASSSLVVKFADTDKER 223
>gi|91090137|ref|XP_976135.1| PREDICTED: similar to arrest CG31762-PC isoform 4 [Tribolium
castaneum]
Length = 494
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 112/179 (62%), Gaps = 4/179 (2%)
Query: 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADR 108
S K+FVG VP++ E D+R +FEE+G V + +++DK TG +GCCF+ + T + A +
Sbjct: 90 SDTIKMFVGQVPRSMDENDLRRMFEEYGRVHSINVLRDKTTGASKGCCFVTFFTRKAALQ 149
Query: 109 AIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGR 168
A ALHN TL G PIQ++ AD E E KLFVG L+K+ E +V +FS YG
Sbjct: 150 AQDALHNVKTLNGMHHPIQMKPADSENRN----ERKLFVGMLSKKLCENDVRTLFSGYGT 205
Query: 169 VEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+E+ ++RD S+GC FV ++ + AL+AI AL+ TM GC PL V+FAD ++ +
Sbjct: 206 IEECTVLRDTAGNSKGCAFVTFASKQSALSAIKALHQSQTMEGCSAPLVVKFADTQKEK 264
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 131 ADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVK 189
A E+E+ + K+FVG + + E ++ +F YGRV + ++RD+ S+GC FV
Sbjct: 81 AKIEQEQPDSDTIKMFVGQVPRSMDENDLRRMFEEYGRVHSINVLRDKTTGASKGCCFVT 140
Query: 190 YSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224
+ R AL A +AL+ + T+ G P+ ++ AD +
Sbjct: 141 FFTRKAALQAQDALHNVKTLNGMHHPIQMKPADSE 175
>gi|401397143|ref|XP_003879991.1| hypothetical protein NCLIV_004400 [Neospora caninum Liverpool]
gi|325114399|emb|CBZ49956.1| hypothetical protein NCLIV_004400 [Neospora caninum Liverpool]
Length = 475
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 117/185 (63%), Gaps = 10/185 (5%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG VP++ + +RP+FEE G V E +I+DK TG+ + F+K + AD AIR
Sbjct: 38 KLFVGRVPQSMEDAALRPIFEEFGEVKEAVIIRDKATGKHKNSAFVKMGSIAAADAAIRG 97
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAV---------EYKLFVGSLNKQATEKEVEEIF 163
L++ L +GPI V+YA GE E+LG + KLF+GS+ + TE EV + F
Sbjct: 98 LNSTRILEQSMGPITVKYATGEAEKLGFATSSCEPGQDQAKLFIGSIPRMMTEDEVRQFF 157
Query: 164 SPYGRVEDVYLMRDELKQS-RGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
S YG VE+V++M+D ++ + +GC FVK++ ++ AL A+ L+G +T GC +P+ VRFA+
Sbjct: 158 STYGTVEEVFVMKDNVQNTGKGCCFVKFAFKEEALHAVRTLSGKHTFEGCSRPVEVRFAE 217
Query: 223 PKRPR 227
K R
Sbjct: 218 SKAAR 222
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
AKLF+GS+P+ E+++R F +G V EV ++KD +GCCF+K+A EEA A+R
Sbjct: 137 AKLFIGSIPRMMTEDEVRQFFSTYGTVEEVFVMKDNVQNTGKGCCFVKFAFKEEALHAVR 196
Query: 112 ALHNQHTLPGGVGPIQVRYADGERER 137
L +HT G P++VR+A+ + R
Sbjct: 197 TLSGKHTFEGCSRPVEVRFAESKAAR 222
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAA 199
VE KLFVG + + + + IF +G V++ ++RD+ + + FVK A AA
Sbjct: 35 VEIKLFVGRVPQSMEDAALRPIFEEFGEVKEAVIIRDKATGKHKNSAFVKMGSIAAADAA 94
Query: 200 INALNGIYTMRGCDQPLTVRFADPKRPRPGDSRS 233
I LN + P+TV++A + + G + S
Sbjct: 95 IRGLNSTRILEQSMGPITVKYATGEAEKLGFATS 128
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A +FV VP D+ F GNV+ + D+ TG+ +G F+ Y E A A+
Sbjct: 345 ANIFVFHVPNEWTYYDLMQNFGGFGNVVSARVATDRTTGRNRGFAFVSYDNVESAATAV- 403
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERL 138
+N + G ++V GE + +
Sbjct: 404 --NNMNGFMAGGKRLKVSVKKGEEQYV 428
>gi|195546832|ref|NP_001124260.1| CUGBP Elav-like family member 5 [Danio rerio]
gi|190339155|gb|AAI63416.1| Brunol5 protein [Danio rerio]
Length = 528
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 110/175 (62%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D++PLFE+ G + E+ ++KD+ TG +GC F+ Y E A +A A
Sbjct: 79 KLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAIKAQNA 138
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG LNKQ TE++V +F PYG +E+
Sbjct: 139 LHEQKTLPGMTRPIQVKPADSESR---GEDRKLFVGMLNKQQTEEDVYRLFEPYGVIEEC 195
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+S A +AI+AL+G TM G L V+FAD + R
Sbjct: 196 TVLRGPDGNSKGCAFVKFSTHAEAQSAISALHGSQTMPGASSSLVVKFADTDKER 250
>gi|289812790|gb|ADD18414.1| RNA-binding protein CUGBP1/BrUNO [Glossina morsitans morsitans]
Length = 706
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 115/191 (60%), Gaps = 10/191 (5%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G P PD + K+FVG VPK+ E +R +FEE+G V + +++DK TG +GCC
Sbjct: 290 GEKEPDPDNI------KMFVGQVPKSMDEAQLREMFEEYGPVHSINVLRDKATGISKGCC 343
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATE 156
F+ + T A +A ALHN TL G PIQ++ AD E E KLFVG LNK+ E
Sbjct: 344 FVTFYTRRAALKAQDALHNVKTLNGMYHPIQMKPADSENRN----ERKLFVGMLNKKLNE 399
Query: 157 KEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPL 216
+V ++F +G +E+ ++RD+ QS+GC FV ++ + A++AI LN TM GC PL
Sbjct: 400 NDVRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKTLNQNKTMEGCTSPL 459
Query: 217 TVRFADPKRPR 227
V+FAD ++ +
Sbjct: 460 VVKFADTQKEK 470
>gi|226371663|ref|NP_001139766.1| CUGBP Elav-like family member 4 isoform C [Mus musculus]
gi|27753638|gb|AAO22167.1| bruno-like 4 protein [Mus musculus]
Length = 495
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/203 (42%), Positives = 117/203 (57%), Gaps = 5/203 (2%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 27 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYK 144
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E + K
Sbjct: 87 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRG----DRK 142
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALN 204
LFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A AAINAL+
Sbjct: 143 LFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALH 202
Query: 205 GIYTMRGCDQPLTVRFADPKRPR 227
G TM G L V+FAD + R
Sbjct: 203 GSQTMPGASSSLVVKFADTDKER 225
>gi|432853507|ref|XP_004067741.1| PREDICTED: CUGBP Elav-like family member 5-like isoform 1 [Oryzias
latipes]
Length = 529
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 109/175 (62%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D++PLFE+ G + E+ ++KD+ TG +GC F+ Y E A +A A
Sbjct: 78 KLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAIKAQNA 137
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG LNKQ TE++V +F PYG +E+
Sbjct: 138 LHEQKTLPGMTRPIQVKPADSESR---GEDRKLFVGMLNKQQTEEDVYRLFEPYGVIEEC 194
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+S A +AI AL+G TM G L V+FAD + R
Sbjct: 195 TVLRGPDGNSKGCAFVKFSAHTEAQSAIGALHGSQTMPGASSSLVVKFADTDKER 249
>gi|149944693|ref|NP_001092538.1| CUGBP Elav-like family member 4 [Bos taurus]
gi|148878073|gb|AAI46143.1| BRUNOL4 protein [Bos taurus]
gi|296473867|tpg|DAA15982.1| TPA: CUG-BP- and ETR-3-like factor 4 [Bos taurus]
Length = 475
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/203 (42%), Positives = 117/203 (57%), Gaps = 5/203 (2%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 27 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYK 144
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E + K
Sbjct: 87 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRG----DRK 142
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALN 204
LFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A AAINAL+
Sbjct: 143 LFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALH 202
Query: 205 GIYTMRGCDQPLTVRFADPKRPR 227
G TM G L V+FAD + R
Sbjct: 203 GSQTMPGASSSLVVKFADTDKER 225
>gi|148664598|gb|EDK97014.1| bruno-like 4, RNA binding protein (Drosophila), isoform CRA_e [Mus
musculus]
Length = 501
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/203 (42%), Positives = 117/203 (57%), Gaps = 5/203 (2%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 33 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 92
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYK 144
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E + K
Sbjct: 93 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRG----DRK 148
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALN 204
LFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A AAINAL+
Sbjct: 149 LFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALH 208
Query: 205 GIYTMRGCDQPLTVRFADPKRPR 227
G TM G L V+FAD + R
Sbjct: 209 GSQTMPGASSSLVVKFADTDKER 231
>gi|207028397|ref|NP_001128708.1| CUGBP, Elav-like family member 4 [Xenopus laevis]
gi|197359136|gb|ACH69784.1| RNA binding protein Bruno-like 4 [Xenopus laevis]
Length = 471
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+ Y E A +A A
Sbjct: 53 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 112
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG LNKQ +E +V +F +G +E+
Sbjct: 113 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLNKQQSEDDVRRLFEAFGNIEEC 169
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVKYS A AAINAL+G TM G L V+FAD + R
Sbjct: 170 TILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKER 224
>gi|332849799|ref|XP_512100.3| PREDICTED: CUGBP, Elav-like family member 4 [Pan troglodytes]
gi|194379036|dbj|BAG58069.1| unnamed protein product [Homo sapiens]
Length = 454
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/203 (42%), Positives = 117/203 (57%), Gaps = 5/203 (2%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 27 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYK 144
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E + K
Sbjct: 87 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRG----DRK 142
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALN 204
LFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A AAINAL+
Sbjct: 143 LFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALH 202
Query: 205 GIYTMRGCDQPLTVRFADPKRPR 227
G TM G L V+FAD + R
Sbjct: 203 GSQTMPGASSSLVVKFADTDKER 225
>gi|363744108|ref|XP_003642976.1| PREDICTED: CUGBP, Elav-like family member 4 [Gallus gallus]
Length = 454
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 120/213 (56%), Gaps = 4/213 (1%)
Query: 16 NYPLPQSLPVPQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEE 74
N L + P +G G + G PS + KLF+G +P+ E+D++PLFEE
Sbjct: 15 NTSLSSNHSNPSTNGHMNGLNHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEE 74
Query: 75 HGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGE 134
G + E+ ++KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E
Sbjct: 75 FGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE 134
Query: 135 RERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRD 194
+ KLFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS
Sbjct: 135 SR---GEDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHA 191
Query: 195 MALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
A AAINAL+G TM G L V+FAD + R
Sbjct: 192 EAQAAINALHGSQTMPGASSSLVVKFADTDKER 224
>gi|432853509|ref|XP_004067742.1| PREDICTED: CUGBP Elav-like family member 5-like isoform 2 [Oryzias
latipes]
Length = 489
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 109/175 (62%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D++PLFE+ G + E+ ++KD+ TG +GC F+ Y E A +A A
Sbjct: 78 KLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAIKAQNA 137
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG LNKQ TE++V +F PYG +E+
Sbjct: 138 LHEQKTLPGMTRPIQVKPADSESR---GEDRKLFVGMLNKQQTEEDVYRLFEPYGVIEEC 194
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+S A +AI AL+G TM G L V+FAD + R
Sbjct: 195 TVLRGPDGNSKGCAFVKFSAHTEAQSAIGALHGSQTMPGASSSLVVKFADTDKER 249
>gi|395510718|ref|XP_003759619.1| PREDICTED: CUGBP Elav-like family member 4-like [Sarcophilus
harrisii]
Length = 453
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+ Y E A +A A
Sbjct: 54 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 113
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG LNKQ +E +V +F +G +E+
Sbjct: 114 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLNKQQSEDDVRRLFEAFGNIEEC 170
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVKYS A AAINAL+G TM G L V+FAD + R
Sbjct: 171 TILRGPDGNSKGCAFVKYSSHVEAQAAINALHGSQTMPGASSSLVVKFADTDKER 225
>gi|401409201|ref|XP_003884049.1| CUG-BP-and ETR-3-like factor 3, related [Neospora caninum
Liverpool]
gi|325118466|emb|CBZ54017.1| CUG-BP-and ETR-3-like factor 3, related [Neospora caninum
Liverpool]
Length = 678
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 79/188 (42%), Positives = 113/188 (60%), Gaps = 13/188 (6%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG VP+T E+ +RP+FE G+V EV +I+DK T + + F+K A+ AD IRA
Sbjct: 131 KLFVGRVPQTVDEDALRPIFEGFGDVREVFVIRDKNTLKHKNSAFVKMASLAAADACIRA 190
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLG------------AVEYKLFVGSLNKQATEKEVE 160
LH+ L +GPI V+YA GE ERLG + KLFVGS+ + +E E+
Sbjct: 191 LHSNRILDAALGPIIVKYATGEAERLGMHSLGMGGEGGGVDQAKLFVGSIPRTMSEDELR 250
Query: 161 EIFSPYGRVEDVYLMRDELKQS-RGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
F YG VE+V++M+D + +GC FVK+ +++ L A+ LNG + GC +P+ VR
Sbjct: 251 VFFQTYGTVEEVFVMKDSATGTGKGCAFVKFKYKEEGLHAMRNLNGKHIFEGCTRPVEVR 310
Query: 220 FADPKRPR 227
FA+ K R
Sbjct: 311 FAESKSQR 318
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 57/86 (66%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
AKLFVGS+P+T E+++R F+ +G V EV ++KD TG +GC F+K+ EE A+R
Sbjct: 233 AKLFVGSIPRTMSEDELRVFFQTYGTVEEVFVMKDSATGTGKGCAFVKFKYKEEGLHAMR 292
Query: 112 ALHNQHTLPGGVGPIQVRYADGERER 137
L+ +H G P++VR+A+ + +R
Sbjct: 293 NLNGKHIFEGCTRPVEVRFAESKSQR 318
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE--LKQSRGCGFVKYSHRDMALA 198
VE KLFVG + + E + IF +G V +V+++RD+ LK + FVK + A A
Sbjct: 128 VEIKLFVGRVPQTVDEDALRPIFEGFGDVREVFVIRDKNTLKH-KNSAFVKMASLAAADA 186
Query: 199 AINALNGIYTMRGCDQPLTVRFADPKRPRPG 229
I AL+ + P+ V++A + R G
Sbjct: 187 CIRALHSNRILDAALGPIIVKYATGEAERLG 217
>gi|387542962|gb|AFJ72108.1| CUGBP Elav-like family member 4 isoform 1 [Macaca mulatta]
Length = 486
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 118/210 (56%), Gaps = 8/210 (3%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 27 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV--- 141
KD+ TG +GC F+ Y + A +A ALH Q TLPG PIQV+ AD E +
Sbjct: 87 KDRFTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGSSCLRQ 146
Query: 142 ----EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMAL 197
+ KLFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A
Sbjct: 147 PPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQ 206
Query: 198 AAINALNGIYTMRGCDQPLTVRFADPKRPR 227
AAINAL+G TM G L V+FAD + R
Sbjct: 207 AAINALHGSQTMPGASSSLVVKFADTDKER 236
>gi|270013480|gb|EFA09928.1| hypothetical protein TcasGA2_TC012080 [Tribolium castaneum]
Length = 469
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 111/175 (63%), Gaps = 4/175 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
K+FVG VP++ E D+R +FEE+G V + +++DK TG +GCCF+ + T + A +A A
Sbjct: 69 KMFVGQVPRSMDENDLRRMFEEYGRVHSINVLRDKTTGASKGCCFVTFFTRKAALQAQDA 128
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LHN TL G PIQ++ AD E E KLFVG L+K+ E +V +FS YG +E+
Sbjct: 129 LHNVKTLNGMHHPIQMKPADSENRN----ERKLFVGMLSKKLCENDVRTLFSGYGTIEEC 184
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++RD S+GC FV ++ + AL+AI AL+ TM GC PL V+FAD ++ +
Sbjct: 185 TVLRDTAGNSKGCAFVTFASKQSALSAIKALHQSQTMEGCSAPLVVKFADTQKEK 239
>gi|291394300|ref|XP_002713553.1| PREDICTED: bruno-like 4, RNA binding protein-like [Oryctolagus
cuniculus]
Length = 485
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 89/211 (42%), Positives = 120/211 (56%), Gaps = 10/211 (4%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 27 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV--- 141
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E R G+
Sbjct: 87 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE-SRGGSSCPR 145
Query: 142 -----EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMA 196
+ KLFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A
Sbjct: 146 QPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEA 205
Query: 197 LAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
AAINAL+G TM G L V+FAD + R
Sbjct: 206 QAAINALHGSQTMPGASSSLVVKFADTDKER 236
>gi|118103587|ref|XP_001231325.1| PREDICTED: CUGBP, Elav-like family member 4 isoform 2 [Gallus
gallus]
Length = 483
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 88/211 (41%), Positives = 120/211 (56%), Gaps = 10/211 (4%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G + G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 25 PSTNGHMNGLNHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 84
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV--- 141
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E R G+
Sbjct: 85 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE-SRGGSCCLR 143
Query: 142 -----EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMA 196
+ KLFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A
Sbjct: 144 QPCTKDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEA 203
Query: 197 LAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
AAINAL+G TM G L V+FAD + R
Sbjct: 204 QAAINALHGSQTMPGASSSLVVKFADTDKER 234
>gi|291327533|ref|NP_001167545.1| CUGBP Elav-like family member 4 isoform F [Mus musculus]
gi|26341974|dbj|BAC34649.1| unnamed protein product [Mus musculus]
Length = 456
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 89/211 (42%), Positives = 120/211 (56%), Gaps = 10/211 (4%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 27 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV--- 141
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E R G+
Sbjct: 87 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE-SRGGSSCLR 145
Query: 142 -----EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMA 196
+ KLFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A
Sbjct: 146 QPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEA 205
Query: 197 LAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
AAINAL+G TM G L V+FAD + R
Sbjct: 206 QAAINALHGSQTMPGASSSLVVKFADTDKER 236
>gi|380013066|ref|XP_003690591.1| PREDICTED: CUGBP Elav-like family member 2-like [Apis florea]
Length = 582
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 78/187 (41%), Positives = 111/187 (59%), Gaps = 10/187 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
P PD + K+FVG VP E D+R LFEE G V ++ +++DK TG +GCCF+ +
Sbjct: 81 PDPDNI------KMFVGQVPHDMDENDLRKLFEEFGRVHQINILRDKITGSHRGCCFVTF 134
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVE 160
T + A A ALHN T G PIQ++ AD E E KLFVG L+K+ TE +V
Sbjct: 135 YTRKAALDAQNALHNVKTFNGMRHPIQMKPADSENRN----ERKLFVGMLSKKFTENDVR 190
Query: 161 EIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220
+FS YG +E+ ++RD +S+ C FV ++ + A+ AI AL+ TM GC PL V+F
Sbjct: 191 NMFSVYGTIEECSVLRDSTGKSKACAFVTFASKQYAINAIKALHHSQTMEGCSSPLVVKF 250
Query: 221 ADPKRPR 227
AD ++ +
Sbjct: 251 ADTQKEK 257
>gi|344269050|ref|XP_003406368.1| PREDICTED: CUGBP Elav-like family member 4-like isoform 2
[Loxodonta africana]
Length = 486
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 89/211 (42%), Positives = 120/211 (56%), Gaps = 10/211 (4%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 27 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV--- 141
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E R G+
Sbjct: 87 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE-SRGGSSCLR 145
Query: 142 -----EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMA 196
+ KLFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A
Sbjct: 146 QPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEA 205
Query: 197 LAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
AAINAL+G TM G L V+FAD + R
Sbjct: 206 QAAINALHGSQTMPGASSSLVVKFADTDKER 236
>gi|148664595|gb|EDK97011.1| bruno-like 4, RNA binding protein (Drosophila), isoform CRA_b [Mus
musculus]
Length = 463
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 89/211 (42%), Positives = 120/211 (56%), Gaps = 10/211 (4%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 33 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 92
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV--- 141
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E R G+
Sbjct: 93 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE-SRGGSSCLR 151
Query: 142 -----EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMA 196
+ KLFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A
Sbjct: 152 QPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEA 211
Query: 197 LAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
AAINAL+G TM G L V+FAD + R
Sbjct: 212 QAAINALHGSQTMPGASSSLVVKFADTDKER 242
>gi|432858764|ref|XP_004068927.1| PREDICTED: CUGBP Elav-like family member 4-like [Oryzias latipes]
Length = 505
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D+RPLFEE G + E+ ++KD+ TG +GC F+ Y E A +A A
Sbjct: 52 KLFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESALKAQNA 111
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG LNKQ +E +V +F +G +E+
Sbjct: 112 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLNKQQSEDDVRRLFESFGSIEEC 168
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVKYS A AAI+AL+G TM G L V+FAD + R
Sbjct: 169 TILRGPDGNSKGCAFVKYSSHAEAQAAISALHGSQTMPGASSSLVVKFADTDKER 223
>gi|391337388|ref|XP_003743051.1| PREDICTED: CUGBP Elav-like family member 2-like [Metaseiulus
occidentalis]
Length = 512
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 106/170 (62%), Gaps = 4/170 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
K+FVG +P+ E ++R LFEE G V + +++DK TG +GCCF+ + T + A A
Sbjct: 59 KMFVGQIPRNWDENELRNLFEEFGKVHSINVLRDKATGNSRGCCFVTFYTRKSALDAQND 118
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LHN TLPG PIQ++ AD E E KLF+G L+K+ E +V +FS +G +E+
Sbjct: 119 LHNIKTLPGMHHPIQMKPADSENRN----ERKLFIGMLSKECDESDVRLMFSSFGTIEEC 174
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++RD QS+GC FV YS R A+ AI ++N TM+GC PL V+FAD
Sbjct: 175 TVLRDGQGQSKGCAFVTYSTRQCAINAIKSMNHSQTMKGCSNPLVVKFAD 224
>gi|344269048|ref|XP_003406367.1| PREDICTED: CUGBP Elav-like family member 4-like isoform 1
[Loxodonta africana]
Length = 447
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+ Y E A +A A
Sbjct: 8 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG LNKQ +E +V +F +G +E+
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLNKQQSEDDVRRLFEAFGNIEEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVKYS A AAINAL+G TM G L V+FAD + R
Sbjct: 125 TILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKER 179
>gi|13123778|ref|NP_064565.1| CUGBP Elav-like family member 4 isoform 1 [Homo sapiens]
gi|397520308|ref|XP_003830262.1| PREDICTED: CUGBP Elav-like family member 4 isoform 1 [Pan paniscus]
gi|403265036|ref|XP_003924762.1| PREDICTED: CUGBP Elav-like family member 4 [Saimiri boliviensis
boliviensis]
gi|426385818|ref|XP_004059398.1| PREDICTED: CUGBP Elav-like family member 4 isoform 2 [Gorilla
gorilla gorilla]
gi|74761348|sp|Q9BZC1.1|CELF4_HUMAN RecName: Full=CUGBP Elav-like family member 4; Short=CELF-4;
AltName: Full=Bruno-like protein 4; AltName:
Full=CUG-BP- and ETR-3-like factor 4; AltName:
Full=RNA-binding protein BRUNOL-4
gi|152013395|sp|Q5NVC8.2|CELF4_PONAB RecName: Full=CUGBP Elav-like family member 4; Short=CELF-4;
AltName: Full=Bruno-like protein 4; AltName:
Full=CUG-BP- and ETR-3-like factor 4; AltName:
Full=RNA-binding protein BRUNOL-4
gi|12746394|gb|AAK07475.1|AF329265_1 CUG-BP and ETR-3 like factor 4 [Homo sapiens]
gi|119621802|gb|EAX01397.1| bruno-like 4, RNA binding protein (Drosophila), isoform CRA_d [Homo
sapiens]
Length = 486
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 89/211 (42%), Positives = 120/211 (56%), Gaps = 10/211 (4%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 27 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV--- 141
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E R G+
Sbjct: 87 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE-SRGGSSCLR 145
Query: 142 -----EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMA 196
+ KLFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A
Sbjct: 146 QPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEA 205
Query: 197 LAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
AAINAL+G TM G L V+FAD + R
Sbjct: 206 QAAINALHGSQTMPGASSSLVVKFADTDKER 236
>gi|395822986|ref|XP_003784782.1| PREDICTED: CUGBP Elav-like family member 4 isoform 1 [Otolemur
garnettii]
Length = 486
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 89/211 (42%), Positives = 120/211 (56%), Gaps = 10/211 (4%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 27 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV--- 141
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E R G+
Sbjct: 87 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE-SRGGSSCLR 145
Query: 142 -----EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMA 196
+ KLFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A
Sbjct: 146 QPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEA 205
Query: 197 LAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
AAINAL+G TM G L V+FAD + R
Sbjct: 206 QAAINALHGSQTMPGASSSLVVKFADTDKER 236
>gi|187761299|ref|NP_001020258.1| CUGBP Elav-like family member 4 isoform 2 [Homo sapiens]
Length = 485
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 89/211 (42%), Positives = 120/211 (56%), Gaps = 10/211 (4%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 27 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV--- 141
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E R G+
Sbjct: 87 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE-SRGGSSCLR 145
Query: 142 -----EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMA 196
+ KLFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A
Sbjct: 146 QPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEA 205
Query: 197 LAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
AAINAL+G TM G L V+FAD + R
Sbjct: 206 QAAINALHGSQTMPGASSSLVVKFADTDKER 236
>gi|207080190|ref|NP_001128833.1| CUGBP Elav-like family member 4 isoform 2 [Pongo abelii]
gi|55730138|emb|CAH91793.1| hypothetical protein [Pongo abelii]
Length = 456
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 119/210 (56%), Gaps = 9/210 (4%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 27 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGA---- 140
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E R G+
Sbjct: 87 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE-SRGGSSCLR 145
Query: 141 ---VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMAL 197
KLFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A
Sbjct: 146 QPPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQ 205
Query: 198 AAINALNGIYTMRGCDQPLTVRFADPKRPR 227
AAINAL+G TM G L V+FAD + R
Sbjct: 206 AAINALHGSQTMPGASSSLVVKFADTDKER 235
>gi|152013394|sp|Q7TSY6.2|CELF4_MOUSE RecName: Full=CUGBP Elav-like family member 4; Short=CELF-4;
AltName: Full=Bruno-like protein 4; AltName:
Full=CUG-BP- and ETR-3-like factor 4; AltName:
Full=RNA-binding protein BRUNOL-4
Length = 486
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 89/211 (42%), Positives = 120/211 (56%), Gaps = 10/211 (4%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 27 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV--- 141
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E R G+
Sbjct: 87 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE-SRGGSSCLR 145
Query: 142 -----EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMA 196
+ KLFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A
Sbjct: 146 QPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEA 205
Query: 197 LAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
AAINAL+G TM G L V+FAD + R
Sbjct: 206 QAAINALHGSQTMPGASSSLVVKFADTDKER 236
>gi|301100224|ref|XP_002899202.1| CUG-BP- and ETR-3-like factor, putative [Phytophthora infestans
T30-4]
gi|262104119|gb|EEY62171.1| CUG-BP- and ETR-3-like factor, putative [Phytophthora infestans
T30-4]
Length = 496
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 116/177 (65%), Gaps = 5/177 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG VP+T E+D+RP+ E G + ++ +I+DK TG +GC F Y T + A++A++
Sbjct: 33 KLFVGQVPRTMEEDDLRPVLEVFGPLEDLVIIRDKITGAHRGCAFASYFTRDAAEKAVQE 92
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
LHN+ TLP + P+QVR A+G+ GA E+KLF+G + K A E + ++F +G +E+
Sbjct: 93 LHNKVTLPQSINPLQVRPAEGQA---GASQEHKLFIGMIPKTADEAAIRDVFELFGSIEE 149
Query: 172 VYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
VY++R QS+GC F+K+ R ALAAI +NGI TM PL V+FAD +R R
Sbjct: 150 VYILRHPATGQSKGCAFLKFKERSSALAAIEEVNGIVTMDRGTSPLVVKFADSRRQR 206
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +PKTA E IR +FE G++ EV +++ TGQ +GC F+K+ A AI
Sbjct: 122 KLFIGMIPKTADEAAIRDVFELFGSIEEVYILRHPATGQSKGCAFLKFKERSSALAAIEE 181
Query: 113 LHNQHTLPGGVGPIQVRYADGERERL 138
++ T+ G P+ V++AD R+RL
Sbjct: 182 VNGIVTMDRGTSPLVVKFADSRRQRL 207
>gi|226371661|ref|NP_001139765.1| CUGBP Elav-like family member 4 isoform B [Mus musculus]
gi|30931371|gb|AAH52744.1| Bruno-like 4, RNA binding protein (Drosophila) [Mus musculus]
Length = 485
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 89/211 (42%), Positives = 120/211 (56%), Gaps = 10/211 (4%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 27 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV--- 141
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E R G+
Sbjct: 87 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE-SRGGSSCLR 145
Query: 142 -----EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMA 196
+ KLFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A
Sbjct: 146 QPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEA 205
Query: 197 LAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
AAINAL+G TM G L V+FAD + R
Sbjct: 206 QAAINALHGSQTMPGASSSLVVKFADTDKER 236
>gi|443723647|gb|ELU11974.1| hypothetical protein CAPTEDRAFT_144233 [Capitella teleta]
Length = 461
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 118/192 (61%), Gaps = 9/192 (4%)
Query: 36 SGRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGC 95
+G+ P PD + K+FVG +P++ E D+R +FEE G V ++ +++DK TGQ +GC
Sbjct: 6 TGKTEPDPDAI------KMFVGQIPRSMDESDLRKMFEEFGPVFQLNVLRDKVTGQSKGC 59
Query: 96 CFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQAT 155
CF+ + T + A A LHN T+ G PIQ++ AD E+ E KLFVG L+K+
Sbjct: 60 CFVTFYTRKSALEAQNQLHNIKTMAGMQHPIQMKPADCEKRN---EERKLFVGMLSKKCN 116
Query: 156 EKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQP 215
E EV +F+P+G +E+ ++R++ QSRGC FV Y+ + A AI ++ TM GC P
Sbjct: 117 ENEVRMMFAPFGTIEECTVLREQNGQSRGCAFVTYASKQCAQNAIKGMHHSQTMEGCRFP 176
Query: 216 LTVRFADPKRPR 227
L VRFAD ++ +
Sbjct: 177 LVVRFADTQKEK 188
>gi|348508140|ref|XP_003441613.1| PREDICTED: CUGBP Elav-like family member 4-like [Oreochromis
niloticus]
Length = 524
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D+RPLFEE G + E+ ++KD+ TG +GC F+ Y E A +A A
Sbjct: 52 KLFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESALKAQNA 111
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG LNKQ +E +V +F +G +E+
Sbjct: 112 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLNKQQSEDDVRRLFESFGSIEEC 168
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVKYS A AAI+AL+G TM G L V+FAD + R
Sbjct: 169 TILRGPDGNSKGCAFVKYSSHAEAQAAISALHGSQTMPGASSSLVVKFADTDKER 223
>gi|325562941|gb|ADZ31338.1| cell size RNA recognition motif 2 [synthetic construct]
Length = 98
Score = 162 bits (410), Expect = 6e-37, Method: Composition-based stats.
Identities = 74/95 (77%), Positives = 86/95 (90%)
Query: 138 LGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMAL 197
+GAVE+KLFVGSLNKQATE EVEE+F +GRVEDVYLMRDE +QSRGCGFVKYS ++ A+
Sbjct: 1 MGAVEFKLFVGSLNKQATENEVEELFLQFGRVEDVYLMRDEYRQSRGCGFVKYSSKETAM 60
Query: 198 AAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
AAI+ LNG YTMRGC+QPL VRFADPKRP+PG+SR
Sbjct: 61 AAIDGLNGTYTMRGCNQPLIVRFADPKRPKPGESR 95
Score = 64.7 bits (156), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/87 (41%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVGS+ K A E ++ LF + G V +V L++D+ Q +GC F+KY++ E A AI
Sbjct: 7 KLFVGSLNKQATENEVEELFLQFGRVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDG 65
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLG 139
L+ +T+ G P+ VR+AD +R + G
Sbjct: 66 LNGTYTMRGCNQPLIVRFADPKRPKPG 92
>gi|417400799|gb|JAA47323.1| Putative rna-binding protein cugbp1/bruno rrm superfamily [Desmodus
rotundus]
Length = 429
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 119/210 (56%), Gaps = 9/210 (4%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 27 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGA---- 140
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E R G+
Sbjct: 87 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE-SRGGSSCLR 145
Query: 141 ---VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMAL 197
KLFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A
Sbjct: 146 QPPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQ 205
Query: 198 AAINALNGIYTMRGCDQPLTVRFADPKRPR 227
AAINAL+G TM G L V+FAD + R
Sbjct: 206 AAINALHGSQTMPGASSSLVVKFADTDKER 235
>gi|351711625|gb|EHB14544.1| CUG-BP- and ETR-3-like factor 4 [Heterocephalus glaber]
Length = 702
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 89/211 (42%), Positives = 120/211 (56%), Gaps = 10/211 (4%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 192 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 251
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV--- 141
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E R G+
Sbjct: 252 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE-SRGGSSCLR 310
Query: 142 -----EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMA 196
+ KLFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A
Sbjct: 311 QPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEA 370
Query: 197 LAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
AAINAL+G TM G L V+FAD + R
Sbjct: 371 QAAINALHGSQTMPGASSSLVVKFADTDKER 401
>gi|187761301|ref|NP_001020259.1| CUGBP Elav-like family member 4 isoform 3 [Homo sapiens]
Length = 484
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 119/210 (56%), Gaps = 9/210 (4%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 27 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGA---- 140
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E R G+
Sbjct: 87 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE-SRGGSSCLR 145
Query: 141 ---VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMAL 197
KLFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A
Sbjct: 146 QPPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQ 205
Query: 198 AAINALNGIYTMRGCDQPLTVRFADPKRPR 227
AAINAL+G TM G L V+FAD + R
Sbjct: 206 AAINALHGSQTMPGASSSLVVKFADTDKER 235
>gi|148664597|gb|EDK97013.1| bruno-like 4, RNA binding protein (Drosophila), isoform CRA_d [Mus
musculus]
Length = 491
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 89/211 (42%), Positives = 120/211 (56%), Gaps = 10/211 (4%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 33 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 92
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV--- 141
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E R G+
Sbjct: 93 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE-SRGGSSCLR 151
Query: 142 -----EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMA 196
+ KLFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A
Sbjct: 152 QPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEA 211
Query: 197 LAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
AAINAL+G TM G L V+FAD + R
Sbjct: 212 QAAINALHGSQTMPGASSSLVVKFADTDKER 242
>gi|148664594|gb|EDK97010.1| bruno-like 4, RNA binding protein (Drosophila), isoform CRA_a [Mus
musculus]
Length = 485
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 119/210 (56%), Gaps = 9/210 (4%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 27 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGA---- 140
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E R G+
Sbjct: 87 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE-SRGGSSCLR 145
Query: 141 ---VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMAL 197
KLFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A
Sbjct: 146 QPPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQ 205
Query: 198 AAINALNGIYTMRGCDQPLTVRFADPKRPR 227
AAINAL+G TM G L V+FAD + R
Sbjct: 206 AAINALHGSQTMPGASSSLVVKFADTDKER 235
>gi|226371657|ref|NP_573458.2| CUGBP Elav-like family member 4 isoform D [Mus musculus]
Length = 484
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 119/210 (56%), Gaps = 9/210 (4%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 27 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGA---- 140
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E R G+
Sbjct: 87 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE-SRGGSSCLR 145
Query: 141 ---VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMAL 197
KLFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A
Sbjct: 146 QPPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQ 205
Query: 198 AAINALNGIYTMRGCDQPLTVRFADPKRPR 227
AAINAL+G TM G L V+FAD + R
Sbjct: 206 AAINALHGSQTMPGASSSLVVKFADTDKER 235
>gi|301769063|ref|XP_002919950.1| PREDICTED: CUGBP Elav-like family member 4-like [Ailuropoda
melanoleuca]
Length = 463
Score = 162 bits (409), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 88/211 (41%), Positives = 120/211 (56%), Gaps = 10/211 (4%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 27 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV--- 141
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E R G+
Sbjct: 87 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE-SRGGSSCLR 145
Query: 142 -----EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMA 196
+ KLFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A
Sbjct: 146 QPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEA 205
Query: 197 LAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
AAIN+L+G TM G L V+FAD + R
Sbjct: 206 QAAINSLHGSQTMPGASSSLVVKFADTDKER 236
>gi|195435051|ref|XP_002065515.1| GK15495 [Drosophila willistoni]
gi|194161600|gb|EDW76501.1| GK15495 [Drosophila willistoni]
Length = 758
Score = 162 bits (409), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 113/175 (64%), Gaps = 4/175 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
K+FVG +PKT E +R +FE+ G+V + +++DK T +GCCF+ Y T + A RA A
Sbjct: 285 KMFVGQIPKTWDETKLRRMFEQFGHVHTLNVLRDKVTSISRGCCFVTYYTRKAALRAQDA 344
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LHN TL G PIQ++ AD E E KLFVG LNK+ TE +V ++F+ +G +E+
Sbjct: 345 LHNIKTLDGMHHPIQMKPADSENRN----ERKLFVGMLNKKYTEADVRQLFTGHGTIEEC 400
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++RD++ QS+GC FV ++ + A+ AI AL+ TM GC PL V+FAD ++ +
Sbjct: 401 TVLRDQVGQSKGCAFVTFATKQNAIGAIKALHQSQTMEGCSAPLVVKFADTQKEK 455
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 132 DGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQ-SRGCGFVKY 190
D +++ A K+FVG + K E ++ +F +G V + ++RD++ SRGC FV Y
Sbjct: 273 DLTKDQPDADNIKMFVGQIPKTWDETKLRRMFEQFGHVHTLNVLRDKVTSISRGCCFVTY 332
Query: 191 SHRDMALAAINALNGIYTMRGCDQPLTVRFADPKR 225
R AL A +AL+ I T+ G P+ ++ AD +
Sbjct: 333 YTRKAALRAQDALHNIKTLDGMHHPIQMKPADSEN 367
Score = 39.7 bits (91), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEE 105
++G + LF+ +P+ + D+ F GNV+ + DK+T + F+ Y
Sbjct: 667 IEGPDGSNLFIYHLPQEFIDTDLASTFLPFGNVLSAKVFIDKQTNLSKCFGFVSYDNPHS 726
Query: 106 ADRAIRALH 114
A+ AI+A+H
Sbjct: 727 ANAAIQAMH 735
>gi|33872777|gb|AAH04167.2| Bruno-like 4, RNA binding protein (Drosophila) [Homo sapiens]
gi|37515278|gb|AAH01946.2| Bruno-like 4, RNA binding protein (Drosophila) [Homo sapiens]
Length = 484
Score = 162 bits (409), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 119/210 (56%), Gaps = 9/210 (4%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 27 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGA---- 140
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E R G+
Sbjct: 87 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE-SRGGSSCLR 145
Query: 141 ---VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMAL 197
KLFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A
Sbjct: 146 QPPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQ 205
Query: 198 AAINALNGIYTMRGCDQPLTVRFADPKRPR 227
AAINAL+G TM G L V+FAD + R
Sbjct: 206 AAINALHGSQTMPGASSSLVVKFADTDKER 235
>gi|22760138|dbj|BAC11082.1| unnamed protein product [Homo sapiens]
Length = 484
Score = 162 bits (409), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 120/210 (57%), Gaps = 9/210 (4%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 27 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGRIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGA---- 140
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E R G+
Sbjct: 87 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE-SRGGSSCLR 145
Query: 141 ---VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMAL 197
KLFVG LNKQ +E++V +F +G +E+ ++R S+GC FVKYS A
Sbjct: 146 QPPSHRKLFVGMLNKQQSEEDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQ 205
Query: 198 AAINALNGIYTMRGCDQPLTVRFADPKRPR 227
AAINAL+G TM G L V+FAD + R
Sbjct: 206 AAINALHGGQTMPGASSSLVVKFADTDKER 235
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRA 109
S KLFVG + K EED+R LFE GN+ E +++ G +GC F+KY++ EA A
Sbjct: 149 SHRKLFVGMLNKQQSEEDVRRLFEAFGNIEECTILRGPD-GNSKGCAFVKYSSHAEAQAA 207
Query: 110 IRALHNQHTLPGGVGPIQVRYADGERERL 138
I ALH T+PG + V++AD ++ER+
Sbjct: 208 INALHGGQTMPGASSSLVVKFADTDKERM 236
>gi|195388108|ref|XP_002052732.1| GJ17718 [Drosophila virilis]
gi|194149189|gb|EDW64887.1| GJ17718 [Drosophila virilis]
Length = 738
Score = 162 bits (409), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 112/175 (64%), Gaps = 4/175 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
K+FVG +PKT E +R LFE+ G V + +++DK T +GCCF+ Y T + A RA A
Sbjct: 278 KMFVGQIPKTWDELKLRRLFEQFGRVHTLNVLRDKVTSISRGCCFVTYYTRKAALRAQDA 337
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LHN TL G PIQ++ AD E E KLFVG LNK+ TE +V ++F+ +G +E+
Sbjct: 338 LHNIKTLDGMHHPIQMKPADSENRN----ERKLFVGMLNKKFTEADVRQLFTGHGTIEEC 393
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++RD++ QS+GC FV ++ + A+ AI AL+ TM GC PL V+FAD ++ +
Sbjct: 394 TVLRDQVGQSKGCAFVTFATKQNAIGAIKALHQSQTMEGCSAPLVVKFADTQKEK 448
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALA 198
A K+FVG + K E ++ +F +GRV + ++RD++ SRGC FV Y R AL
Sbjct: 274 ADNIKMFVGQIPKTWDELKLRRLFEQFGRVHTLNVLRDKVTSISRGCCFVTYYTRKAALR 333
Query: 199 AINALNGIYTMRGCDQPLTVRFADPK 224
A +AL+ I T+ G P+ ++ AD +
Sbjct: 334 AQDALHNIKTLDGMHHPIQMKPADSE 359
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEE 105
++G + LF+ +P+ + D+ F GNV+ + DK+T + F+ Y
Sbjct: 647 IEGPDGSNLFIYHLPQEFIDTDLASTFLPFGNVLSAKVFIDKQTNLSKCFGFVSYDNPHS 706
Query: 106 ADRAIRALH 114
A+ AI+A+H
Sbjct: 707 ANAAIQAMH 715
>gi|26339326|dbj|BAC33334.1| unnamed protein product [Mus musculus]
Length = 484
Score = 161 bits (408), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 119/210 (56%), Gaps = 9/210 (4%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 27 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGA---- 140
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E R G+
Sbjct: 87 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE-SRGGSSCLR 145
Query: 141 ---VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMAL 197
KLFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A
Sbjct: 146 QPPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQ 205
Query: 198 AAINALNGIYTMRGCDQPLTVRFADPKRPR 227
AAINAL+G TM G L V+FAD + R
Sbjct: 206 AAINALHGSQTMPGASSSLVVKFADTDKER 235
>gi|281337967|gb|EFB13551.1| hypothetical protein PANDA_012783 [Ailuropoda melanoleuca]
Length = 462
Score = 161 bits (408), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 81/188 (43%), Positives = 114/188 (60%), Gaps = 2/188 (1%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
G PD + KLFVG +P+ E+D++PLFE+ G + E+ ++KD TG +GC F+
Sbjct: 13 GGQPDGMKDLDAIKLFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLT 72
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ AD E G + KLFVG LNKQ +E++V
Sbjct: 73 YCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESR--GGRDRKLFVGMLNKQQSEEDV 130
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +++ ++R S+GC FVK+S A AAI+AL+G TM G L V+
Sbjct: 131 LRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 190
Query: 220 FADPKRPR 227
FAD + R
Sbjct: 191 FADTDKER 198
>gi|328780076|ref|XP_003249751.1| PREDICTED: CUGBP Elav-like family member 2-like [Apis mellifera]
Length = 628
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/187 (41%), Positives = 111/187 (59%), Gaps = 10/187 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
P PD + K+FVG VP E D+R LFEE G V ++ +++DK TG +GCCF+ +
Sbjct: 104 PDPDNI------KMFVGQVPHDMDENDLRKLFEEFGRVHQINILRDKITGSHRGCCFVTF 157
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVE 160
T + A A ALHN T G PIQ++ AD E E KLFVG L+K+ TE +V
Sbjct: 158 YTRKAALDAQNALHNVKTFNGMRHPIQMKPADSENRN----ERKLFVGMLSKKFTENDVR 213
Query: 161 EIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220
+FS YG +E+ ++RD +S+ C FV ++ + A+ AI AL+ TM GC PL V+F
Sbjct: 214 NMFSVYGTIEECSVLRDSTGKSKACAFVTFASKQYAINAIKALHHSQTMEGCSSPLVVKF 273
Query: 221 ADPKRPR 227
AD ++ +
Sbjct: 274 ADTQKEK 280
>gi|50540190|ref|NP_001002562.1| CUGBP Elav-like family member 4 [Danio rerio]
gi|82235921|sp|Q6DGV1.1|CELF4_DANRE RecName: Full=CUGBP Elav-like family member 4; Short=CELF-4;
AltName: Full=Bruno-like protein 4; AltName:
Full=CUG-BP- and ETR-3-like factor 4; AltName:
Full=RNA-binding protein BRUNOL-4
gi|49904554|gb|AAH76238.1| Zgc:92761 [Danio rerio]
Length = 520
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 107/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D+RPLFEE G + E+ ++KD+ TG +GC F+ Y E A +A A
Sbjct: 48 KLFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESALKAQTA 107
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG LNKQ E +V +F +G +E+
Sbjct: 108 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLNKQQCEDDVRRLFESFGSIEEC 164
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVKYS A AAI+AL+G TM G L V+FAD + R
Sbjct: 165 TILRGPDGNSKGCAFVKYSTHAEAQAAISALHGSQTMPGASSSLVVKFADTDKER 219
>gi|226371659|ref|NP_001139764.1| CUGBP Elav-like family member 4 isoform A [Mus musculus]
gi|29387384|gb|AAH48405.1| Brunol4 protein [Mus musculus]
Length = 504
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 119/210 (56%), Gaps = 9/210 (4%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 27 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGA---- 140
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E R G+
Sbjct: 87 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE-SRGGSSCLR 145
Query: 141 ---VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMAL 197
KLFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A
Sbjct: 146 QPPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQ 205
Query: 198 AAINALNGIYTMRGCDQPLTVRFADPKRPR 227
AAINAL+G TM G L V+FAD + R
Sbjct: 206 AAINALHGSQTMPGASSSLVVKFADTDKER 235
>gi|9246977|gb|AAF86232.1|AF248650_1 RNA-binding protein BRUNOL4 [Homo sapiens]
Length = 294
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+ Y E A +A A
Sbjct: 55 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 114
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG LNKQ +E +V +F +G +E+
Sbjct: 115 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLNKQQSEDDVRRLFEAFGNIEEC 171
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVKYS A AAINAL+G TM G L V+FAD + R
Sbjct: 172 TILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKER 226
>gi|148664596|gb|EDK97012.1| bruno-like 4, RNA binding protein (Drosophila), isoform CRA_c [Mus
musculus]
Length = 510
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 119/210 (56%), Gaps = 9/210 (4%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 33 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 92
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGA---- 140
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E R G+
Sbjct: 93 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE-SRGGSSCLR 151
Query: 141 ---VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMAL 197
KLFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A
Sbjct: 152 QPPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQ 211
Query: 198 AAINALNGIYTMRGCDQPLTVRFADPKRPR 227
AAINAL+G TM G L V+FAD + R
Sbjct: 212 AAINALHGSQTMPGASSSLVVKFADTDKER 241
>gi|359322160|ref|XP_854891.3| PREDICTED: CUGBP, Elav-like family member 5 [Canis lupus
familiaris]
Length = 485
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/188 (43%), Positives = 114/188 (60%), Gaps = 2/188 (1%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
G PD + KLFVG +P+ E+D++PLFE+ G + E+ ++KD TG +GC F+
Sbjct: 33 GGQPDGMKDLDAIKLFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLT 92
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ AD E G + KLFVG LNKQ +E++V
Sbjct: 93 YCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESR--GGRDRKLFVGMLNKQQSEEDV 150
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +++ ++R S+GC FVK+S A AAI+AL+G TM G L V+
Sbjct: 151 LRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 210
Query: 220 FADPKRPR 227
FAD + R
Sbjct: 211 FADTDKER 218
>gi|116007320|ref|NP_001036356.1| bruno-2, isoform E [Drosophila melanogaster]
gi|442627593|ref|NP_001260411.1| bruno-2, isoform L [Drosophila melanogaster]
gi|113194979|gb|ABI31310.1| bruno-2, isoform E [Drosophila melanogaster]
gi|440213741|gb|AGB92946.1| bruno-2, isoform L [Drosophila melanogaster]
Length = 893
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 111/175 (63%), Gaps = 4/175 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
K+FVG +PKT E +R +FE+ G V + +++DK T +GCCF+ Y T + A RA A
Sbjct: 296 KMFVGQIPKTWDETRLRQMFEQFGPVHTLNVLRDKVTSISRGCCFVTYYTRKAALRAQDA 355
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LHN TL G PIQ++ AD E E KLFVG LNK+ TE +V ++F+ +G +E+
Sbjct: 356 LHNIKTLDGMHHPIQMKPADSENRN----ERKLFVGMLNKKYTEADVRQLFTGHGTIEEC 411
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++RD+ QS+GC FV ++ + A+ AI AL+ TM GC PL V+FAD ++ +
Sbjct: 412 TVLRDQAGQSKGCAFVTFATKQNAIGAIKALHQSQTMEGCSAPLVVKFADTQKEK 466
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
Query: 8 MSGPRSGMNY-PLPQSLPVPQLSGQKRGFSGRGGPSPDLVDGSSFAKLFVGSVPKTAREE 66
+SG +G Y Q + L G +G+ PD GS+ LF+ +P+ +
Sbjct: 769 LSGLTNGAAYGAASQPVTTSALQAAAAGVTGKQIEGPD---GSN---LFIYHLPQEFIDT 822
Query: 67 DIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALH 114
D+ F GNV+ + DK+T + F+ Y A+ AI+A+H
Sbjct: 823 DLASTFLPFGNVLSAKVFIDKQTNLSKCFGFVSYDNPHSANAAIQAMH 870
>gi|62089134|dbj|BAD93011.1| bruno-like 4, RNA binding protein variant [Homo sapiens]
Length = 510
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/211 (42%), Positives = 120/211 (56%), Gaps = 10/211 (4%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 52 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 111
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV--- 141
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E R G+
Sbjct: 112 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE-SRGGSSCLR 170
Query: 142 -----EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMA 196
+ KLFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A
Sbjct: 171 QPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEA 230
Query: 197 LAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
AAINAL+G TM G L V+FAD + R
Sbjct: 231 QAAINALHGSQTMPGASSSLVVKFADTDKER 261
>gi|395831373|ref|XP_003788777.1| PREDICTED: CUGBP Elav-like family member 5 [Otolemur garnettii]
Length = 485
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/185 (43%), Positives = 113/185 (61%), Gaps = 2/185 (1%)
Query: 43 PDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYAT 102
PD + KLFVG +P+ E+D++PLFE+ G + E+ ++KD TG +GC F+ Y
Sbjct: 36 PDGMKDLDAIKLFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCA 95
Query: 103 SEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEI 162
+ A +A ALH Q TLPG PIQV+ AD E G + KLFVG LNKQ +E++V +
Sbjct: 96 RDSAIKAQTALHEQKTLPGMARPIQVKPADSESR--GGRDRKLFVGMLNKQQSEEDVLRL 153
Query: 163 FSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
F P+G +++ ++R S+GC FVK+S A AAI+AL+G TM G L V+FAD
Sbjct: 154 FQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFAD 213
Query: 223 PKRPR 227
+ R
Sbjct: 214 TDKER 218
>gi|12746396|gb|AAK07476.1|AF329266_1 CUG-BP and ETR-3 like factor 5 [Homo sapiens]
Length = 481
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/188 (43%), Positives = 114/188 (60%), Gaps = 2/188 (1%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
G PD + KLFVG +P+ E+D++PLFE+ G + E+ ++KD TG +GC F+
Sbjct: 33 GGQPDGMKDLDAIKLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLT 92
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ AD E G + KLFVG LNKQ +E++V
Sbjct: 93 YCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESR--GGRDRKLFVGMLNKQQSEEDV 150
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +++ ++R S+GC FVK+S A AAI+AL+G TM G L V+
Sbjct: 151 LRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 210
Query: 220 FADPKRPR 227
FAD + R
Sbjct: 211 FADTDKER 218
>gi|62087714|dbj|BAD92304.1| bruno-like 5, RNA binding protein variant [Homo sapiens]
Length = 421
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/188 (43%), Positives = 114/188 (60%), Gaps = 2/188 (1%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
G PD + KLFVG +P+ E+D++PLFE+ G + E+ ++KD TG +GC F+
Sbjct: 45 GGQPDGMKDLDAIKLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLT 104
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ AD E G + KLFVG LNKQ +E++V
Sbjct: 105 YCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESR--GGRDRKLFVGMLNKQQSEEDV 162
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +++ ++R S+GC FVK+S A AAI+AL+G TM G L V+
Sbjct: 163 LRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 222
Query: 220 FADPKRPR 227
FAD + R
Sbjct: 223 FADTDKER 230
>gi|358413030|ref|XP_610805.5| PREDICTED: CUGBP, Elav-like family member 5 [Bos taurus]
Length = 562
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/188 (43%), Positives = 113/188 (60%), Gaps = 2/188 (1%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
G PD KLFVG +P+ E+D++PLFE+ G + E+ ++KD TG +GC F+
Sbjct: 110 GGQPDGTKDLDAIKLFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLT 169
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ AD E G + KLFVG LNKQ +E++V
Sbjct: 170 YCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESR--GGRDRKLFVGMLNKQQSEEDV 227
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +++ ++R S+GC FVK+S A AAI+AL+G TM G L V+
Sbjct: 228 LRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 287
Query: 220 FADPKRPR 227
FAD + R
Sbjct: 288 FADTDKER 295
>gi|348529973|ref|XP_003452486.1| PREDICTED: CUGBP Elav-like family member 3-like [Oreochromis
niloticus]
Length = 453
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 109/175 (62%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y E A +A A
Sbjct: 8 KLFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQNA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+ +V ++F P+G +E+
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDADVRKMFEPFGSIEEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAINAL+G T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQSNAEAQAAINALHGSRTLPGASSSLVVKFADSEKER 179
Score = 39.3 bits (90), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AI A+
Sbjct: 370 IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPSSAQTAIQAM 429
Query: 204 NGI 206
NG
Sbjct: 430 NGF 432
>gi|208022666|ref|NP_001129075.1| CUG-BP- and ETR-3-like factor 5 [Rattus norvegicus]
Length = 395
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 110/175 (62%), Gaps = 2/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++PLFE+ G + E+ ++KD TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLHEQDLKPLFEQFGRIYELTVLKDPHTGVHKGCAFLTYCARDSAIKAQTA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E G + KLFVG LNKQ +E++V +F P+G +++
Sbjct: 68 LHEQKTLPGMARPIQVKPADSENR--GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDEC 125
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+S A AAI+AL+G TM G L V+FAD + R
Sbjct: 126 TVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKER 180
>gi|24762232|ref|NP_068757.2| CUGBP Elav-like family member 5 isoform 1 [Homo sapiens]
gi|402903694|ref|XP_003914695.1| PREDICTED: CUGBP Elav-like family member 5 [Papio anubis]
gi|74762534|sp|Q8N6W0.1|CELF5_HUMAN RecName: Full=CUGBP Elav-like family member 5; Short=CELF-5;
AltName: Full=Bruno-like protein 5; AltName:
Full=CUG-BP- and ETR-3-like factor 5; AltName:
Full=RNA-binding protein BRUNOL-5
gi|20380221|gb|AAH28101.1| Bruno-like 5, RNA binding protein (Drosophila) [Homo sapiens]
gi|119589733|gb|EAW69327.1| bruno-like 5, RNA binding protein (Drosophila), isoform CRA_a [Homo
sapiens]
gi|119589734|gb|EAW69328.1| bruno-like 5, RNA binding protein (Drosophila), isoform CRA_a [Homo
sapiens]
gi|123981490|gb|ABM82574.1| bruno-like 5, RNA binding protein (Drosophila) [synthetic
construct]
gi|123996323|gb|ABM85763.1| bruno-like 5, RNA binding protein (Drosophila) [synthetic
construct]
Length = 485
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/188 (43%), Positives = 114/188 (60%), Gaps = 2/188 (1%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
G PD + KLFVG +P+ E+D++PLFE+ G + E+ ++KD TG +GC F+
Sbjct: 33 GGQPDGMKDLDAIKLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLT 92
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ AD E G + KLFVG LNKQ +E++V
Sbjct: 93 YCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESR--GGRDRKLFVGMLNKQQSEEDV 150
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +++ ++R S+GC FVK+S A AAI+AL+G TM G L V+
Sbjct: 151 LRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 210
Query: 220 FADPKRPR 227
FAD + R
Sbjct: 211 FADTDKER 218
>gi|289547698|ref|NP_001166144.1| CUGBP Elav-like family member 5 isoform 2 [Homo sapiens]
Length = 409
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/188 (43%), Positives = 114/188 (60%), Gaps = 2/188 (1%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
G PD + KLFVG +P+ E+D++PLFE+ G + E+ ++KD TG +GC F+
Sbjct: 33 GGQPDGMKDLDAIKLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLT 92
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ AD E G + KLFVG LNKQ +E++V
Sbjct: 93 YCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESR--GGRDRKLFVGMLNKQQSEEDV 150
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +++ ++R S+GC FVK+S A AAI+AL+G TM G L V+
Sbjct: 151 LRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 210
Query: 220 FADPKRPR 227
FAD + R
Sbjct: 211 FADTDKER 218
>gi|197097518|ref|NP_001127577.1| CUGBP Elav-like family member 4 isoform 1 [Pongo abelii]
gi|55732010|emb|CAH92712.1| hypothetical protein [Pongo abelii]
Length = 457
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 119/210 (56%), Gaps = 9/210 (4%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 27 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGA---- 140
KD+ TG +GC F+ Y+ E A +A ALH Q TLPG PIQV+ AD E R G+
Sbjct: 87 KDRFTGMHKGCAFLTYSERESALKAQSALHEQKTLPGMNRPIQVKPADSE-SRGGSSCLR 145
Query: 141 ---VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMAL 197
KL VG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A
Sbjct: 146 QPPSHRKLLVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQ 205
Query: 198 AAINALNGIYTMRGCDQPLTVRFADPKRPR 227
AAINAL+G TM G L V+FAD + R
Sbjct: 206 AAINALHGSQTMPGASSSLVVKFADTDKER 235
>gi|386769531|ref|NP_001246000.1| bruno-2, isoform G [Drosophila melanogaster]
gi|442627595|ref|NP_723742.2| bruno-2, isoform M [Drosophila melanogaster]
gi|383291458|gb|AFH03674.1| bruno-2, isoform G [Drosophila melanogaster]
gi|440213742|gb|AAF53180.4| bruno-2, isoform M [Drosophila melanogaster]
Length = 664
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 111/175 (63%), Gaps = 4/175 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
K+FVG +PKT E +R +FE+ G V + +++DK T +GCCF+ Y T + A RA A
Sbjct: 296 KMFVGQIPKTWDETRLRQMFEQFGPVHTLNVLRDKVTSISRGCCFVTYYTRKAALRAQDA 355
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LHN TL G PIQ++ AD E E KLFVG LNK+ TE +V ++F+ +G +E+
Sbjct: 356 LHNIKTLDGMHHPIQMKPADSENRN----ERKLFVGMLNKKYTEADVRQLFTGHGTIEEC 411
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++RD+ QS+GC FV ++ + A+ AI AL+ TM GC PL V+FAD ++ +
Sbjct: 412 TVLRDQAGQSKGCAFVTFATKQNAIGAIKALHQSQTMEGCSAPLVVKFADTQKEK 466
>gi|345326922|ref|XP_003431097.1| PREDICTED: CUGBP Elav-like family member 3 isoform 2
[Ornithorhynchus anatinus]
Length = 448
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/176 (46%), Positives = 111/176 (63%), Gaps = 3/176 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRNLEEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRVED 171
LH Q TLPG PIQV+ AD E GA+E KLFVG L KQ +E +V +F P+G++E+
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSEGR--GALEDRKLFVGMLGKQQSEDDVRRLFEPFGQIEE 125
Query: 172 VYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVKY A AAIN+L+G TM G L V+FAD + R
Sbjct: 126 CTILRGPDGASKGCAFVKYGSHAEAQAAINSLHGSQTMPGASSSLVVKFADTDKER 181
>gi|350417598|ref|XP_003491500.1| PREDICTED: LOW QUALITY PROTEIN: CUGBP Elav-like family member
2-like [Bombus impatiens]
Length = 635
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/187 (41%), Positives = 111/187 (59%), Gaps = 10/187 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
P PD + K+FVG VP E D+R LFEE G V ++ +++DK TG +GCCF+ +
Sbjct: 104 PDPDNI------KMFVGQVPHDMDENDLRKLFEEFGRVHQINILRDKITGSHRGCCFVTF 157
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVE 160
T + A A ALHN T G PIQ++ AD E E KLFVG L+K+ +E +V
Sbjct: 158 YTRKAALDAQNALHNVKTFSGMRHPIQMKPADSENRN----ERKLFVGMLSKKFSENDVR 213
Query: 161 EIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220
+FS YG +E+ ++RD +S+ C FV ++ + A+ AI AL+ TM GC PL V+F
Sbjct: 214 NMFSIYGTIEECSVLRDSTGKSKACAFVTFASKQYAINAIKALHHSQTMEGCSSPLVVKF 273
Query: 221 ADPKRPR 227
AD ++ +
Sbjct: 274 ADTQKEK 280
>gi|189339278|ref|NP_795928.2| CUG-BP- and ETR-3-like factor 5 [Mus musculus]
Length = 395
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 110/175 (62%), Gaps = 2/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++PLFE+ G + E+ ++KD TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLHEQDLKPLFEQFGRIYELTVLKDPHTGVHKGCAFLTYCARDSAIKAQTA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E G + KLFVG LNKQ +E++V +F P+G +++
Sbjct: 68 LHEQKTLPGMARPIQVKPADSESR--GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDEC 125
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+S A AAI+AL+G TM G L V+FAD + R
Sbjct: 126 TVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKER 180
>gi|219109993|ref|XP_002176749.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411284|gb|EEC51212.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 499
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 115/200 (57%), Gaps = 6/200 (3%)
Query: 29 SGQKRGFSGRGGPSPDLVDGSSF-AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDK 87
S G G S D DG KLFVG VPK EED+ P F+ G + +VA+I+DK
Sbjct: 99 SAHYNGGDSSGNASADNDDGEDDPMKLFVGQVPKAMSEEDVFPTFDSFGPLKDVAIIRDK 158
Query: 88 KTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFV 147
TG +GC F+ Y ++ +A+RA ALH+ T PG QV+ A+ E KLFV
Sbjct: 159 HTGLHRGCAFVTYWSAADAERAQEALHDTFTFPGARRAAQVKPAEPS-----VPENKLFV 213
Query: 148 GSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIY 207
G L+++ATE E+ E+F P+G + +VY++R+ S+ F++Y R A+ AI LN IY
Sbjct: 214 GMLSRKATEVEIRELFEPFGEIREVYMIRNADGSSKCAAFLRYMKRGAAVQAIETLNNIY 273
Query: 208 TMRGCDQPLTVRFADPKRPR 227
M G +PL VRFAD K R
Sbjct: 274 MMEGAARPLIVRFADNKHQR 293
Score = 43.1 bits (100), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+G + A LFV +P + D+ F GNVI + DK +G+ +G F+ Y + A
Sbjct: 395 EGPAGANLFVYHLPHDLTDADLATAFNPFGNVISAKVYVDKYSGESKGFGFVSYDSVIAA 454
Query: 107 DRAIRALH 114
+ AI ++
Sbjct: 455 EAAIEQMN 462
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 135 RERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHR 193
R R G LFV L T+ ++ F+P+G V + D+ +S+G GFV Y
Sbjct: 392 RPREGPAGANLFVYHLPHDLTDADLATAFNPFGNVISAKVYVDKYSGESKGFGFVSYDSV 451
Query: 194 DMALAAINALNGI 206
A AAI +NG
Sbjct: 452 IAAEAAIEQMNGF 464
>gi|390344759|ref|XP_782270.3| PREDICTED: CUGBP Elav-like family member 1-A-like
[Strongylocentrotus purpuratus]
Length = 605
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 115/187 (61%), Gaps = 11/187 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
P PD + K+FVG +PK E+ +R +F E G V E+ +++DKKTG+ +GC F+ +
Sbjct: 52 PDPDSL------KMFVGQIPKAYEEDKLREMFSEFGPVYELNVLRDKKTGESKGCAFVTF 105
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVE 160
+ AD+A + LHN+ LPG PIQ++ AD E E E KLFVG L+K+ E +V
Sbjct: 106 YSGVVADKAQKELHNRKVLPGMRHPIQMKPADCEVE-----ERKLFVGMLSKKCDESDVR 160
Query: 161 EIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220
+FS +G +E+ +++RD++ +GC FV Y+ R MAL I +++ M GC L V+F
Sbjct: 161 IMFSAFGSIEECHILRDQMGGHKGCAFVTYATRQMALNCIRSMHQSRIMDGCTSKLVVKF 220
Query: 221 ADPKRPR 227
AD ++ +
Sbjct: 221 ADTQKEK 227
>gi|340718155|ref|XP_003397537.1| PREDICTED: CUGBP Elav-like family member 2-like [Bombus terrestris]
Length = 627
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 77/187 (41%), Positives = 111/187 (59%), Gaps = 10/187 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
P PD + K+FVG VP E D+R LFEE G V ++ +++DK TG +GCCF+ +
Sbjct: 103 PDPDNI------KMFVGQVPHDMDENDLRKLFEEFGRVHQINILRDKITGSHRGCCFVTF 156
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVE 160
T + A A ALHN T G PIQ++ AD E E KLFVG L+K+ +E +V
Sbjct: 157 YTRKAALDAQNALHNVKTFSGMRHPIQMKPADSENRN----ERKLFVGMLSKKFSENDVR 212
Query: 161 EIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220
+FS YG +E+ ++RD +S+ C FV ++ + A+ AI AL+ TM GC PL V+F
Sbjct: 213 NMFSIYGTIEECSVLRDSTGKSKACAFVTFASKQYAINAIKALHHSQTMEGCSSPLVVKF 272
Query: 221 ADPKRPR 227
AD ++ +
Sbjct: 273 ADTQKEK 279
>gi|95007487|emb|CAJ20709.1| RNA binding protein, putative [Toxoplasma gondii RH]
gi|221480877|gb|EEE19298.1| conserved hypothetical protein [Toxoplasma gondii GT1]
gi|221501598|gb|EEE27368.1| RNA recognition motif domain-containing protein, putative
[Toxoplasma gondii VEG]
Length = 475
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 82/198 (41%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG VP++ + +RP+FEE G V E +I+DK TG+ + FIK + AD AIR
Sbjct: 38 KLFVGRVPQSMEDAALRPIFEEFGEVKEAVIIRDKATGKHKNSAFIKMDSIAAADAAIRG 97
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAV---------EYKLFVGSLNKQATEKEVEEIF 163
L++ L +GPI V+YA GE E+LG + KLF+GS+ + TE+EV + F
Sbjct: 98 LNSTRILEQSMGPITVKYATGEAEKLGFATSSCEPGQDQAKLFIGSIPRTMTEEEVRQFF 157
Query: 164 SPYGRVEDVYLMRDELKQS-RGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
S YG VE+V++M+D ++ + +GC FVK++ ++ AL A+ L+G +T GC +P+ VRFA+
Sbjct: 158 STYGTVEEVFVMKDNVQNTGKGCCFVKFAFKEEALHAVRTLSGKHTFEGCTRPVEVRFAE 217
Query: 223 PKRPRPGDSRSGPTFGGP 240
K R + GGP
Sbjct: 218 SKAARQQQMMNQQAMGGP 235
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 56/86 (65%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
AKLF+GS+P+T EE++R F +G V EV ++KD +GCCF+K+A EEA A+R
Sbjct: 137 AKLFIGSIPRTMTEEEVRQFFSTYGTVEEVFVMKDNVQNTGKGCCFVKFAFKEEALHAVR 196
Query: 112 ALHNQHTLPGGVGPIQVRYADGERER 137
L +HT G P++VR+A+ + R
Sbjct: 197 TLSGKHTFEGCTRPVEVRFAESKAAR 222
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAA 199
VE KLFVG + + + + IF +G V++ ++RD+ + + F+K A AA
Sbjct: 35 VEIKLFVGRVPQSMEDAALRPIFEEFGEVKEAVIIRDKATGKHKNSAFIKMDSIAAADAA 94
Query: 200 INALNGIYTMRGCDQPLTVRFADPKRPRPGDSRS 233
I LN + P+TV++A + + G + S
Sbjct: 95 IRGLNSTRILEQSMGPITVKYATGEAEKLGFATS 128
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A +FV VP D+ F GNV+ + D+ TG+ +G F+ Y E A A+
Sbjct: 345 ANIFVFHVPNEWTYYDLMQNFGGFGNVVSARVATDRTTGRNRGFAFVSYDNVESAATAV- 403
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERL 138
+N + G ++V GE + +
Sbjct: 404 --NNMNGFMAGGKRLKVSVKKGEEQYV 428
>gi|42476252|ref|NP_571569.2| CUGBP Elav-like family member 3 [Danio rerio]
gi|152013393|sp|Q9IBD1.2|CELF3_DANRE RecName: Full=CUGBP Elav-like family member 3; Short=CELF-3;
AltName: Full=Bruno-like protein 1; AltName:
Full=CUG-BP- and ETR-3-like factor 3; AltName:
Full=ELAV-type RNA-binding protein 1; Short=ETR-1;
AltName: Full=RNA-binding protein BRUNOL-1; AltName:
Full=Trinucleotide repeat-containing gene 4 protein
gi|38173873|gb|AAH60923.1| Trinucleotide repeat containing 4 [Danio rerio]
Length = 452
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 110/175 (62%), Gaps = 4/175 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y E A +A A
Sbjct: 8 KLFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQNA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E G + KLFVG L KQ ++ +V ++F P+G +E+
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSE----GRGDRKLFVGMLGKQLSDADVRKMFEPFGSIEEC 123
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVKY A AAI+AL+G T+ G L V+FAD ++ R
Sbjct: 124 TVLRGPDGASKGCAFVKYQSNAEAQAAISALHGSRTLPGASSSLVVKFADTEKER 178
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+G KLFVG + K + D+R +FE G++ E +++ G +GC F+KY ++ EA
Sbjct: 89 EGRGDRKLFVGMLGKQLSDADVRKMFEPFGSIEECTVLRGPD-GASKGCAFVKYQSNAEA 147
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERER 137
AI ALH TLPG + V++AD E+ER
Sbjct: 148 QAAISALHGSRTLPGASSSLVVKFADTEKER 178
Score = 39.3 bits (90), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 369 IFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 428
Query: 204 NGI 206
NG
Sbjct: 429 NGF 431
>gi|194861277|ref|XP_001969747.1| GG23780 [Drosophila erecta]
gi|190661614|gb|EDV58806.1| GG23780 [Drosophila erecta]
Length = 646
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 111/175 (63%), Gaps = 4/175 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
K+FVG +PKT E +R +FE+ G V + +++DK T +GCCF+ Y T + A RA A
Sbjct: 312 KMFVGQIPKTWDETRLRQMFEQFGAVHTLNVLRDKVTSISRGCCFVTYYTRKAALRAQDA 371
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LHN TL G PIQ++ AD E E KLFVG LNK+ TE +V ++F+ +G +E+
Sbjct: 372 LHNIKTLDGMHHPIQMKPADSENRN----ERKLFVGMLNKKYTEADVRQLFTGHGTIEEC 427
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++RD+ QS+GC FV ++ + A+ AI AL+ TM GC PL V+FAD ++ +
Sbjct: 428 TVLRDQAGQSKGCAFVTFATKQNAIGAIKALHQSQTMEGCSAPLVVKFADTQKEK 482
>gi|7670536|dbj|BAA95118.1| Etr-1 [Danio rerio]
Length = 452
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 110/175 (62%), Gaps = 4/175 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y E A +A A
Sbjct: 8 KLFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQNA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E G + KLFVG L KQ ++ +V ++F P+G +E+
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSE----GRGDRKLFVGMLGKQLSDADVRKMFEPFGSIEEC 123
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVKY A AAI+AL+G T+ G L V+FAD ++ R
Sbjct: 124 TVLRGPDGASKGCAFVKYQSNAEAQAAISALHGSRTLPGASSSLVVKFADTEKER 178
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+G KLFVG + K + D+R +FE G++ E +++ G +GC F+KY ++ EA
Sbjct: 89 EGRGDRKLFVGMLGKQLSDADVRKMFEPFGSIEECTVLRGPD-GASKGCAFVKYQSNAEA 147
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERER 137
AI ALH TLPG + V++AD E+ER
Sbjct: 148 QAAISALHGSRTLPGASSSLVVKFADTEKER 178
Score = 39.3 bits (90), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 369 IFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 428
Query: 204 NGI 206
NG
Sbjct: 429 NGF 431
>gi|440792905|gb|ELR14112.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 458
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 111/191 (58%), Gaps = 17/191 (8%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
KLF+G +PK+ E I PLF GN++EVA+I+++ TG+ +GC F+ Y ++ A+ AI
Sbjct: 104 VKLFIGQLPKSMTEPYIGPLFAPFGNLVEVAIIRNRATGESRGCAFVTYDNADSAELAIE 163
Query: 112 ALHNQHTLPGGVGPIQVRYAD---GERERL--------------GAVEYKLFVGSLNKQA 154
LHN+ TLPG PIQV+YA G+ R E+KLF+G L +
Sbjct: 164 TLHNKQTLPGMTSPIQVKYAHGGGGDAPRYTPAPVPDYGMPGMDNMTEFKLFIGMLPRTV 223
Query: 155 TEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQ 214
E + IF PYG + +V ++R+ SRGC FVKY R+ A+ AINA NG +G
Sbjct: 224 GEDGLRAIFQPYGSIIEVVVLREPDGSSRGCAFVKYHRREDAVNAINACNGQMFFQGQTN 283
Query: 215 PLTVRFADPKR 225
PLTV+FAD R
Sbjct: 284 PLTVKFADGGR 294
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 59/99 (59%), Gaps = 5/99 (5%)
Query: 41 PSPDL----VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
P PD +D + KLF+G +P+T E+ +R +F+ +G++IEV ++++ G +GC
Sbjct: 197 PVPDYGMPGMDNMTEFKLFIGMLPRTVGEDGLRAIFQPYGSIIEVVVLREPD-GSSRGCA 255
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGER 135
F+KY E+A AI A + Q G P+ V++ADG R
Sbjct: 256 FVKYHRREDAVNAINACNGQMFFQGQTNPLTVKFADGGR 294
>gi|28574145|ref|NP_788039.1| bruno-2, isoform D [Drosophila melanogaster]
gi|442627591|ref|NP_001260410.1| bruno-2, isoform K [Drosophila melanogaster]
gi|28380348|gb|AAO41184.1| bruno-2, isoform D [Drosophila melanogaster]
gi|440213740|gb|AGB92945.1| bruno-2, isoform K [Drosophila melanogaster]
Length = 737
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 111/175 (63%), Gaps = 4/175 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
K+FVG +PKT E +R +FE+ G V + +++DK T +GCCF+ Y T + A RA A
Sbjct: 296 KMFVGQIPKTWDETRLRQMFEQFGPVHTLNVLRDKVTSISRGCCFVTYYTRKAALRAQDA 355
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LHN TL G PIQ++ AD E E KLFVG LNK+ TE +V ++F+ +G +E+
Sbjct: 356 LHNIKTLDGMHHPIQMKPADSENRN----ERKLFVGMLNKKYTEADVRQLFTGHGTIEEC 411
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++RD+ QS+GC FV ++ + A+ AI AL+ TM GC PL V+FAD ++ +
Sbjct: 412 TVLRDQAGQSKGCAFVTFATKQNAIGAIKALHQSQTMEGCSAPLVVKFADTQKEK 466
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
Query: 8 MSGPRSGMNY-PLPQSLPVPQLSGQKRGFSGRGGPSPDLVDGSSFAKLFVGSVPKTAREE 66
+SG +G Y Q + L G +G+ PD GS+ LF+ +P+ +
Sbjct: 613 LSGLTNGAAYGAASQPVTTSALQAAAAGVTGKQIEGPD---GSN---LFIYHLPQEFIDT 666
Query: 67 DIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALH 114
D+ F GNV+ + DK+T + F+ Y A+ AI+A+H
Sbjct: 667 DLASTFLPFGNVLSAKVFIDKQTNLSKCFGFVSYDNPHSANAAIQAMH 714
>gi|237844787|ref|XP_002371691.1| CELF family protein, putative [Toxoplasma gondii ME49]
gi|211969355|gb|EEB04551.1| CELF family protein, putative [Toxoplasma gondii ME49]
Length = 475
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 82/198 (41%), Positives = 121/198 (61%), Gaps = 10/198 (5%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG VP++ + +RP+FEE G V E +I+DK TG+ + FIK + AD AIR
Sbjct: 38 KLFVGRVPQSMEDAALRPIFEEFGEVKEAVIIRDKATGKHKNSAFIKMDSIAAADAAIRG 97
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAV---------EYKLFVGSLNKQATEKEVEEIF 163
L++ L +GPI V+YA GE E+LG + KLF+GS+ + TE EV + F
Sbjct: 98 LNSTRILEQSMGPITVKYATGEAEKLGFATSSCEPGQDQAKLFIGSIPRTMTEDEVRQFF 157
Query: 164 SPYGRVEDVYLMRDELKQS-RGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
S YG VE+V++M+D ++ + +GC FVK++ ++ AL A+ L+G +T GC +P+ VRFA+
Sbjct: 158 STYGTVEEVFVMKDNVQNTGKGCCFVKFAFKEEALHAVRTLSGKHTFEGCTRPVEVRFAE 217
Query: 223 PKRPRPGDSRSGPTFGGP 240
K R + GGP
Sbjct: 218 SKAARQQQMMNQQAMGGP 235
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 56/86 (65%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
AKLF+GS+P+T E+++R F +G V EV ++KD +GCCF+K+A EEA A+R
Sbjct: 137 AKLFIGSIPRTMTEDEVRQFFSTYGTVEEVFVMKDNVQNTGKGCCFVKFAFKEEALHAVR 196
Query: 112 ALHNQHTLPGGVGPIQVRYADGERER 137
L +HT G P++VR+A+ + R
Sbjct: 197 TLSGKHTFEGCTRPVEVRFAESKAAR 222
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAA 199
VE KLFVG + + + + IF +G V++ ++RD+ + + F+K A AA
Sbjct: 35 VEIKLFVGRVPQSMEDAALRPIFEEFGEVKEAVIIRDKATGKHKNSAFIKMDSIAAADAA 94
Query: 200 INALNGIYTMRGCDQPLTVRFADPKRPRPGDSRS 233
I LN + P+TV++A + + G + S
Sbjct: 95 IRGLNSTRILEQSMGPITVKYATGEAEKLGFATS 128
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A +FV VP D+ F GNV+ + D+ TG+ +G F+ Y E A A+
Sbjct: 345 ANIFVFHVPNEWTYYDLMQNFGGFGNVVSARVATDRTTGRNRGFAFVSYDNVESAATAV- 403
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERL 138
+N + G ++V GE + +
Sbjct: 404 --NNMNGFMAGGKRLKVSVKKGEEQYV 428
>gi|348667006|gb|EGZ06832.1| hypothetical protein PHYSODRAFT_353005 [Phytophthora sojae]
Length = 507
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 115/177 (64%), Gaps = 5/177 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG VP+T E+D+RP+ E G + ++ +I+DK TG +GC F Y T + A++A++
Sbjct: 37 KLFVGQVPRTMEEDDLRPVLEVFGPLEDLVIIRDKITGAHRGCAFASYFTRDAAEKAVQE 96
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
LHN+ TLP + P+QVR A+G+ GA E+KLF+G + K A E + E+F +G +E+
Sbjct: 97 LHNKVTLPQSINPLQVRPAEGQA---GASQEHKLFIGMIPKTADEAAIREVFELFGTIEE 153
Query: 172 VYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
VY++R QS+GC F+K+ R ALAAI +NG TM PL V+FAD +R R
Sbjct: 154 VYILRHPATGQSKGCAFLKFKERSSALAAIEEVNGNVTMDRGTSPLVVKFADSRRQR 210
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 52/86 (60%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +PKTA E IR +FE G + EV +++ TGQ +GC F+K+ A AI
Sbjct: 126 KLFIGMIPKTADEAAIREVFELFGTIEEVYILRHPATGQSKGCAFLKFKERSSALAAIEE 185
Query: 113 LHNQHTLPGGVGPIQVRYADGERERL 138
++ T+ G P+ V++AD R+RL
Sbjct: 186 VNGNVTMDRGTSPLVVKFADSRRQRL 211
>gi|195351037|ref|XP_002042043.1| GM26785 [Drosophila sechellia]
gi|194123867|gb|EDW45910.1| GM26785 [Drosophila sechellia]
Length = 644
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 111/175 (63%), Gaps = 4/175 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
K+FVG +PKT E +R +FE+ G V + +++DK T +GCCF+ Y T + A RA A
Sbjct: 308 KMFVGQIPKTWDETRLRQMFEQFGPVHTLNVLRDKVTSISRGCCFVTYYTRKAALRAQDA 367
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LHN TL G PIQ++ AD E E KLFVG LNK+ TE +V ++F+ +G +E+
Sbjct: 368 LHNIKTLDGMHHPIQMKPADSENRN----ERKLFVGMLNKKYTEADVRQLFTGHGTIEEC 423
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++RD+ QS+GC FV ++ + A+ AI AL+ TM GC PL V+FAD ++ +
Sbjct: 424 TVLRDQAGQSKGCAFVTFATKQNAIGAIKALHQSQTMEGCSAPLVVKFADTQKEK 478
>gi|19921186|ref|NP_609559.1| bruno-2, isoform A [Drosophila melanogaster]
gi|17862264|gb|AAL39609.1| LD19052p [Drosophila melanogaster]
gi|22946323|gb|AAF53181.2| bruno-2, isoform A [Drosophila melanogaster]
gi|220943144|gb|ACL84115.1| bru-2-PA [synthetic construct]
Length = 632
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 111/175 (63%), Gaps = 4/175 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
K+FVG +PKT E +R +FE+ G V + +++DK T +GCCF+ Y T + A RA A
Sbjct: 296 KMFVGQIPKTWDETRLRQMFEQFGPVHTLNVLRDKVTSISRGCCFVTYYTRKAALRAQDA 355
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LHN TL G PIQ++ AD E E KLFVG LNK+ TE +V ++F+ +G +E+
Sbjct: 356 LHNIKTLDGMHHPIQMKPADSENRN----ERKLFVGMLNKKYTEADVRQLFTGHGTIEEC 411
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++RD+ QS+GC FV ++ + A+ AI AL+ TM GC PL V+FAD ++ +
Sbjct: 412 TVLRDQAGQSKGCAFVTFATKQNAIGAIKALHQSQTMEGCSAPLVVKFADTQKEK 466
>gi|195035649|ref|XP_001989288.1| GH11645 [Drosophila grimshawi]
gi|193905288|gb|EDW04155.1| GH11645 [Drosophila grimshawi]
Length = 791
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 112/175 (64%), Gaps = 4/175 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
K+FVG +PKT E +R LFE+ G V + +++DK T +GCCF+ Y T + A RA A
Sbjct: 314 KMFVGQIPKTWDEIKLRCLFEQFGRVHTLNVLRDKVTSISRGCCFVTYYTRKAALRAQDA 373
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LHN TL G PIQ++ AD E E KLFVG LNK+ TE +V ++F+ +G +E+
Sbjct: 374 LHNIKTLDGMHHPIQMKPADSENRN----ERKLFVGMLNKKYTEADVRQLFAGHGTIEEC 429
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++RD++ QS+GC FV ++ + A+ AI +L+ TM GC PL V+FAD ++ +
Sbjct: 430 TVLRDQVGQSKGCAFVTFATKQNAIGAIKSLHQSQTMEGCSAPLVVKFADTQKEK 484
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALA 198
A K+FVG + K E ++ +F +GRV + ++RD++ SRGC FV Y R AL
Sbjct: 310 ADNIKMFVGQIPKTWDEIKLRCLFEQFGRVHTLNVLRDKVTSISRGCCFVTYYTRKAALR 369
Query: 199 AINALNGIYTMRGCDQPLTVRFAD 222
A +AL+ I T+ G P+ ++ AD
Sbjct: 370 AQDALHNIKTLDGMHHPIQMKPAD 393
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEE 105
++G + LF+ +P+ + D+ F GNV+ + DK+T + F+ Y
Sbjct: 700 IEGPDGSNLFIYHLPQEFTDTDLASTFLPFGNVLSAKVFIDKQTNLSKCFGFVSYDNPHS 759
Query: 106 ADRAIRALH 114
A+ AI+A+H
Sbjct: 760 ANAAIQAMH 768
>gi|345326924|ref|XP_003431098.1| PREDICTED: CUGBP Elav-like family member 3 isoform 3
[Ornithorhynchus anatinus]
Length = 447
Score = 159 bits (401), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 109/175 (62%), Gaps = 2/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRNLEEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + + KLFVG L KQ +E +V +F P+G++E+
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSEGHSVE--DRKLFVGMLGKQQSEDDVRRLFEPFGQIEEC 125
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVKY A AAIN+L+G TM G L V+FAD + R
Sbjct: 126 TILRGPDGASKGCAFVKYGSHAEAQAAINSLHGSQTMPGASSSLVVKFADTDKER 180
>gi|56403901|emb|CAI29735.1| hypothetical protein [Pongo abelii]
Length = 486
Score = 158 bits (400), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 119/211 (56%), Gaps = 10/211 (4%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 27 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV--- 141
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E R G+
Sbjct: 87 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE-SRGGSSCLR 145
Query: 142 -----EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMA 196
+ KLFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A
Sbjct: 146 QPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEA 205
Query: 197 LAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
AAI+AL+G TM G L +FAD + R
Sbjct: 206 QAAISALHGSQTMPGASSSLVAKFADTDKER 236
>gi|147902406|ref|NP_001090639.1| CUGBP Elav-like family member 5 [Xenopus (Silurana) tropicalis]
gi|152013396|sp|A0JM51.1|CELF5_XENTR RecName: Full=CUGBP Elav-like family member 5; Short=CELF-5;
AltName: Full=Bruno-like protein 5; AltName:
Full=CUG-BP- and ETR-3-like factor 5; AltName:
Full=RNA-binding protein BRUNOL-5
gi|117558445|gb|AAI25740.1| brunol5 protein [Xenopus (Silurana) tropicalis]
Length = 486
Score = 158 bits (400), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 110/175 (62%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++PLFE+ G + E+ ++KD+ TG +GC F+ Y + A +A A
Sbjct: 48 KLFVGQIPRNLEEKDLKPLFEQFGKIYELTVLKDRYTGMHKGCAFLTYCARDSAIKAQTA 107
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E R G + KLFVG L+KQ +E+EV +F +G +E+
Sbjct: 108 LHEQKTLPGMARPIQVKPADSE-SRGG--DRKLFVGMLSKQQSEEEVTSMFQAFGSIEEC 164
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+S A AAI AL+G TM G L V+FAD + R
Sbjct: 165 SVLRGPDGSSKGCAFVKFSSHAEAQAAIQALHGSQTMPGASSSLVVKFADTDKER 219
>gi|237832459|ref|XP_002365527.1| RNA recognition motif domain-containing protein [Toxoplasma gondii
ME49]
gi|211963191|gb|EEA98386.1| RNA recognition motif domain-containing protein [Toxoplasma gondii
ME49]
gi|221487976|gb|EEE26190.1| RNA recognition motif domain-containing protein, putative
[Toxoplasma gondii GT1]
gi|221508501|gb|EEE34070.1| RNA recognition motif domain-containing protein, putative
[Toxoplasma gondii VEG]
Length = 648
Score = 158 bits (400), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 84/203 (41%), Positives = 115/203 (56%), Gaps = 14/203 (6%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG VP T EE +RP+FE G V EV +I+DK T + + F+K A+ AD IRA
Sbjct: 103 KLFVGRVPHTVDEEALRPIFESFGEVREVFVIRDKSTLKHRNSAFVKMASLAAADACIRA 162
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLG------------AVEYKLFVGSLNKQATEKEVE 160
LH+ L +GPI V+YA GE ERLG + KLFVGS+ + +E E+
Sbjct: 163 LHSNRVLDAALGPIIVKYATGEAERLGMHSLGMGGEGGGVDQAKLFVGSIPRTMSEDELR 222
Query: 161 EIFSPYGRVEDVYLMRDELKQS-RGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
F YG VE+V++M+D + +GC FVK+ +++ L A+ LNG + C +P+ VR
Sbjct: 223 LFFQTYGTVEEVFVMKDSATGTGKGCAFVKFKYKEEGLHAMRNLNGKHVFDECTRPVEVR 282
Query: 220 FADPKRPRPGDSRSG-PTFGGPG 241
FA+ K R G FGG G
Sbjct: 283 FAESKSQRQQQMAGGQHNFGGLG 305
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 56/86 (65%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
AKLFVGS+P+T E+++R F+ +G V EV ++KD TG +GC F+K+ EE A+R
Sbjct: 205 AKLFVGSIPRTMSEDELRLFFQTYGTVEEVFVMKDSATGTGKGCAFVKFKYKEEGLHAMR 264
Query: 112 ALHNQHTLPGGVGPIQVRYADGERER 137
L+ +H P++VR+A+ + +R
Sbjct: 265 NLNGKHVFDECTRPVEVRFAESKSQR 290
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE--LKQSRGCGFVKYSHRDMALA 198
VE KLFVG + E+ + IF +G V +V+++RD+ LK R FVK + A A
Sbjct: 100 VEIKLFVGRVPHTVDEEALRPIFESFGEVREVFVIRDKSTLKH-RNSAFVKMASLAAADA 158
Query: 199 AINALNGIYTMRGCDQPLTVRFADPKRPRPG 229
I AL+ + P+ V++A + R G
Sbjct: 159 CIRALHSNRVLDAALGPIIVKYATGEAERLG 189
Score = 38.9 bits (89), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 561 WTEHTSPDGYKYYYNCVTGVSKWEKPEEL 589
W E+ +PDG YY+N T V+ WE+P E
Sbjct: 338 WKEYFAPDGRPYYHNEYTNVTTWERPPEF 366
>gi|212286102|ref|NP_001131056.1| CUGBP, Elav-like family member 5 [Xenopus laevis]
gi|197359138|gb|ACH69785.1| RNA binding protein Bruno-like 5 [Xenopus laevis]
Length = 484
Score = 158 bits (400), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 110/175 (62%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++PLFE+ G + E+ ++KD+ TG +GC F+ Y + A +A A
Sbjct: 47 KLFVGQIPRNLEEKDLKPLFEQFGKIYELTVLKDRYTGMHKGCAFLTYCARDSAIKAQTA 106
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E R G + KLFVG L+KQ +E+EV +F +G +E+
Sbjct: 107 LHEQKTLPGMARPIQVKPADSE-SRGG--DRKLFVGMLSKQQSEEEVTSMFQAFGSIEEC 163
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+S A AAI AL+G TM G L V+FAD + R
Sbjct: 164 SVLRGPDGSSKGCAFVKFSSHAEAQAAIQALHGSQTMPGASSSLVVKFADTDKER 218
>gi|432908655|ref|XP_004077968.1| PREDICTED: CUGBP Elav-like family member 3-like [Oryzias latipes]
Length = 457
Score = 158 bits (400), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 109/175 (62%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y E A +A A
Sbjct: 8 KLFVGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V +F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSEGR---GEDRKLFVGMLGKQQTDEDVRRLFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN+L+G TM G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQGHAEAQAAINSLHGSRTMPGASSSLVVKFADTEKER 179
>gi|158253638|gb|AAI54064.1| tnrc4 protein [Xenopus (Silurana) tropicalis]
Length = 462
Score = 158 bits (400), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 109/175 (62%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y E A +A A
Sbjct: 8 KLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V +F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRRMFEPFGNIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAINAL+G T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHTEAQAAINALHGSRTLPGASSSLVVKFADTEKER 179
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 379 IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQAM 438
Query: 204 NGI 206
NG
Sbjct: 439 NGF 441
>gi|606976|gb|AAA81375.1| ribonucleoprotein [Xenopus laevis]
Length = 462
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 109/175 (62%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y E A +A A
Sbjct: 8 KLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V +F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRRMFEPFGNIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAINAL+G T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHTEAQAAINALHGSRTLPGASSSLVVKFADTEKER 179
Score = 40.0 bits (92), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 379 IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQAM 438
Query: 204 NGI 206
NG
Sbjct: 439 NGF 441
>gi|147907254|ref|NP_001079936.1| CUGBP Elav-like family member 3-A [Xenopus laevis]
gi|152013388|sp|Q91579.2|CEL3A_XENLA RecName: Full=CUGBP Elav-like family member 3-A; Short=CELF-3A;
AltName: Full=Bruno-like protein 1-A; AltName:
Full=CUG-BP- and ETR-3-like factor 3-A; AltName:
Full=ELAV-type RNA-binding protein 1-A; Short=ETR-1-A;
AltName: Full=RNA-binding protein BRUNOL-1-A; AltName:
Full=Trinucleotide repeat-containing gene 4 protein A
gi|34785486|gb|AAH57704.1| Etr-1 protein [Xenopus laevis]
gi|47937574|gb|AAH72134.1| Etr-1 protein [Xenopus laevis]
Length = 462
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 109/175 (62%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y E A +A A
Sbjct: 8 KLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V +F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRRMFEPFGNIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAINAL+G T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHTEAQAAINALHGSRTLPGASSSLVVKFADTEKER 179
Score = 40.0 bits (92), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 379 IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQAM 438
Query: 204 NGI 206
NG
Sbjct: 439 NGF 441
>gi|149638168|ref|XP_001508614.1| PREDICTED: CUGBP Elav-like family member 3 isoform 1
[Ornithorhynchus anatinus]
Length = 446
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRNLEEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ +E +V +F P+G++E+
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSEGR---GEDRKLFVGMLGKQQSEDDVRRLFEPFGQIEEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVKY A AAIN+L+G TM G L V+FAD + R
Sbjct: 125 TILRGPDGASKGCAFVKYGSHAEAQAAINSLHGSQTMPGASSSLVVKFADTDKER 179
>gi|363744095|ref|XP_003642971.1| PREDICTED: CUGBP, Elav-like family member 4 [Gallus gallus]
Length = 496
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/206 (42%), Positives = 118/206 (57%), Gaps = 6/206 (2%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G + G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 25 PSTNGHMNGLNHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 84
Query: 85 KDKKTG--QQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE 142
KD+ + GC F+ Y E A +A ALH Q TLPG PIQV+ AD E GAVE
Sbjct: 85 KDRAQLPLKSMGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESR--GAVE 142
Query: 143 -YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAIN 201
KLFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A AAIN
Sbjct: 143 DRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAIN 202
Query: 202 ALNGIYTMRGCDQPLTVRFADPKRPR 227
AL+G TM G L V+FAD + R
Sbjct: 203 ALHGSQTMPGASSSLVVKFADTDKER 228
>gi|442627571|ref|NP_001260404.1| arrest, isoform H [Drosophila melanogaster]
gi|442627573|ref|NP_001260405.1| arrest, isoform I [Drosophila melanogaster]
gi|442627575|ref|NP_001260406.1| arrest, isoform J [Drosophila melanogaster]
gi|442627577|ref|NP_001260407.1| arrest, isoform K [Drosophila melanogaster]
gi|440213734|gb|AGB92939.1| arrest, isoform H [Drosophila melanogaster]
gi|440213735|gb|AGB92940.1| arrest, isoform I [Drosophila melanogaster]
gi|440213736|gb|AGB92941.1| arrest, isoform J [Drosophila melanogaster]
gi|440213737|gb|AGB92942.1| arrest, isoform K [Drosophila melanogaster]
Length = 573
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 114/192 (59%), Gaps = 11/192 (5%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G P PD + K+FVG VPK+ E +R +FEE+G V + +++DK TG +GCC
Sbjct: 111 GEKEPDPDNI------KMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCC 164
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATE 156
F+ + T A +A ALHN TL G PIQ++ AD E E KLFVG LNK+ E
Sbjct: 165 FVTFYTRHAALKAQDALHNVKTLNGMYHPIQMKPADSENRN----ERKLFVGMLNKKLNE 220
Query: 157 KEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINA-LNGIYTMRGCDQP 215
+V ++F +G +E+ ++RD+ QS+GC FV ++ + A++AI L+ M GC P
Sbjct: 221 NDVRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCTSP 280
Query: 216 LTVRFADPKRPR 227
L V+FAD ++ +
Sbjct: 281 LVVKFADTQKEK 292
>gi|195351033|ref|XP_002042041.1| GM26763 [Drosophila sechellia]
gi|194123865|gb|EDW45908.1| GM26763 [Drosophila sechellia]
Length = 816
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 114/192 (59%), Gaps = 11/192 (5%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G P PD + K+FVG VPK+ E +R +FEE+G V + +++DK TG +GCC
Sbjct: 342 GEKEPDPDNI------KMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCC 395
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATE 156
F+ + T A +A ALHN TL G PIQ++ AD E E KLFVG LNK+ E
Sbjct: 396 FVTFYTRRAALKAQDALHNVKTLNGMYHPIQMKPADSENRN----ERKLFVGMLNKKLNE 451
Query: 157 KEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINA-LNGIYTMRGCDQP 215
+V ++F +G +E+ ++RD+ QS+GC FV ++ + A++AI L+ M GC P
Sbjct: 452 NDVRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCTSP 511
Query: 216 LTVRFADPKRPR 227
L V+FAD ++ +
Sbjct: 512 LVVKFADTQKEK 523
>gi|195148186|ref|XP_002015055.1| GL18624 [Drosophila persimilis]
gi|194107008|gb|EDW29051.1| GL18624 [Drosophila persimilis]
Length = 764
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 111/175 (63%), Gaps = 4/175 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
K+FVG +PKT E +R +FE+ G V + +++DK T +GCCF+ Y T + A RA A
Sbjct: 324 KMFVGQIPKTWDETRLRQMFEQFGPVHTLNVLRDKVTSISRGCCFVTYYTRKAALRAQDA 383
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LHN TL G PIQ++ AD E E KLFVG LNK+ TE +V ++F+ +G +E+
Sbjct: 384 LHNIKTLDGMHHPIQMKPADSENRN----ERKLFVGMLNKKYTEADVRQLFTGHGTIEEC 439
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++RD+ QS+GC FV ++ + A+ AI +L+ TM GC PL V+FAD ++ +
Sbjct: 440 TVLRDQAGQSKGCAFVTFATKQNAIGAIKSLHQSQTMEGCSAPLVVKFADTQKEK 494
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALA 198
A K+FVG + K E + ++F +G V + ++RD++ SRGC FV Y R AL
Sbjct: 320 ADNIKMFVGQIPKTWDETRLRQMFEQFGPVHTLNVLRDKVTSISRGCCFVTYYTRKAALR 379
Query: 199 AINALNGIYTMRGCDQPLTVRFADPK 224
A +AL+ I T+ G P+ ++ AD +
Sbjct: 380 AQDALHNIKTLDGMHHPIQMKPADSE 405
Score = 39.7 bits (91), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEE 105
++G + LF+ +P+ + D+ F GNV+ + DK+T + F+ Y
Sbjct: 673 IEGPDGSNLFIYHLPQEFIDTDLASTFLPFGNVLSAKVFIDKQTNLSKCFGFVSYDNPHS 732
Query: 106 ADRAIRALH 114
A+ AI+A+H
Sbjct: 733 ANAAIQAMH 741
>gi|145306688|gb|ABP57108.1| CUG-BP and ETR-3-like factor 6 [Gallus gallus]
Length = 445
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E D++PLFEE G + E+ ++KD+ TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRNLEESDLKPLFEEFGRIYELTVLKDRFTGMHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ +E +V +F P+G++E+
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSEGR---GEDRKLFVGMLGKQQSEDDVRRLFEPFGQIEEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVKYS A AAI++L+G TM G L V+FAD + R
Sbjct: 125 TILRGPDGASKGCAFVKYSSHAEAQAAISSLHGSQTMPGASSSLVVKFADTDKER 179
>gi|2231301|gb|AAB61993.1| testis-specific RNP-type RNA binding protein [Drosophila
melanogaster]
Length = 808
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 114/192 (59%), Gaps = 11/192 (5%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G P PD + K+FVG VPK+ E +R +FEE+G V + +++DK TG +GCC
Sbjct: 346 GEKEPDPDNI------KMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCC 399
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATE 156
F+ + T A +A ALHN TL G PIQ++ AD E E KLFVG LNK+ E
Sbjct: 400 FVTFYTRRAALKAQDALHNVKTLNGMYHPIQMKPADSENRN----ERKLFVGMLNKKLNE 455
Query: 157 KEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINA-LNGIYTMRGCDQP 215
+V ++F +G +E+ ++RD+ QS+GC FV ++ + A++AI L+ M GC P
Sbjct: 456 NDVRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCTSP 515
Query: 216 LTVRFADPKRPR 227
L V+FAD ++ +
Sbjct: 516 LVVKFADTQKEK 527
>gi|432852722|ref|XP_004067352.1| PREDICTED: CUGBP Elav-like family member 3-A-like isoform 2
[Oryzias latipes]
Length = 493
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+ Y E A +A A
Sbjct: 43 KLFIGQIPRNLEEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESALKAQSA 102
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ +E +V +F +G++E+
Sbjct: 103 LHEQKTLPGMNRPIQVKPADSEGR---GEDRKLFVGMLGKQQSEDDVRRLFETFGQIEEC 159
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+S A AAIN+L+G TM G L V+FAD + R
Sbjct: 160 TVLRGPDGASKGCAFVKFSSHAEAQAAINSLHGGQTMPGASSSLVVKFADTDKER 214
>gi|363737471|ref|XP_425051.3| PREDICTED: CUGBP Elav-like family member 3 [Gallus gallus]
Length = 445
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E D++PLFEE G + E+ ++KD+ TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRNLEESDLKPLFEEFGRIYELTVLKDRFTGMHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ +E +V +F P+G++E+
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSEGR---GEDRKLFVGMLGKQQSEDDVRRLFEPFGQIEEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVKYS A AAI++L+G TM G L V+FAD + R
Sbjct: 125 TILRGPDGASKGCAFVKYSSHAEAQAAISSLHGSQTMPGASSSLVVKFADTDKER 179
>gi|410912254|ref|XP_003969605.1| PREDICTED: CUGBP Elav-like family member 3-A-like [Takifugu
rubripes]
Length = 481
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+ Y E A +A A
Sbjct: 43 KLFIGQIPRNLEEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESALKAQSA 102
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ +E +V +F +G++E+
Sbjct: 103 LHEQKTLPGMNRPIQVKPADSEGR---GEDRKLFVGMLGKQQSEDDVRRLFESFGQIEEC 159
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+S A AAIN+L+G TM G L V+FAD + R
Sbjct: 160 TVLRGPDGASKGCAFVKFSSHGEAQAAINSLHGGQTMPGASSSLVVKFADTDKER 214
>gi|348500286|ref|XP_003437704.1| PREDICTED: CUGBP Elav-like family member 3-A-like [Oreochromis
niloticus]
Length = 481
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+ Y E A +A A
Sbjct: 43 KLFIGQIPRNLEEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESALKAQSA 102
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ +E +V +F +G++E+
Sbjct: 103 LHEQKTLPGMNRPIQVKPADSEGR---GEDRKLFVGMLGKQQSEDDVRRLFETFGQIEEC 159
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+S A AAIN+L+G TM G L V+FAD + R
Sbjct: 160 TVLRGPDGASKGCAFVKFSSHAEAQAAINSLHGGQTMPGASSSLVVKFADTDKER 214
>gi|432852720|ref|XP_004067351.1| PREDICTED: CUGBP Elav-like family member 3-A-like isoform 1
[Oryzias latipes]
Length = 481
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+ Y E A +A A
Sbjct: 43 KLFIGQIPRNLEEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESALKAQSA 102
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ +E +V +F +G++E+
Sbjct: 103 LHEQKTLPGMNRPIQVKPADSEGR---GEDRKLFVGMLGKQQSEDDVRRLFETFGQIEEC 159
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+S A AAIN+L+G TM G L V+FAD + R
Sbjct: 160 TVLRGPDGASKGCAFVKFSSHAEAQAAINSLHGGQTMPGASSSLVVKFADTDKER 214
>gi|24583873|ref|NP_723737.1| arrest, isoform B [Drosophila melanogaster]
gi|442627569|ref|NP_001260403.1| arrest, isoform G [Drosophila melanogaster]
gi|22946318|gb|AAN10810.1| arrest, isoform B [Drosophila melanogaster]
gi|375065944|gb|AFA28453.1| FI19388p1 [Drosophila melanogaster]
gi|440213733|gb|AGB92938.1| arrest, isoform G [Drosophila melanogaster]
Length = 810
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 114/192 (59%), Gaps = 11/192 (5%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G P PD + K+FVG VPK+ E +R +FEE+G V + +++DK TG +GCC
Sbjct: 348 GEKEPDPDNI------KMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCC 401
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATE 156
F+ + T A +A ALHN TL G PIQ++ AD E E KLFVG LNK+ E
Sbjct: 402 FVTFYTRHAALKAQDALHNVKTLNGMYHPIQMKPADSENRN----ERKLFVGMLNKKLNE 457
Query: 157 KEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINA-LNGIYTMRGCDQP 215
+V ++F +G +E+ ++RD+ QS+GC FV ++ + A++AI L+ M GC P
Sbjct: 458 NDVRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCTSP 517
Query: 216 LTVRFADPKRPR 227
L V+FAD ++ +
Sbjct: 518 LVVKFADTQKEK 529
>gi|24583877|ref|NP_723739.1| arrest, isoform A [Drosophila melanogaster]
gi|281364913|ref|NP_001162963.1| arrest, isoform E [Drosophila melanogaster]
gi|15291827|gb|AAK93182.1| LD29068p [Drosophila melanogaster]
gi|22946320|gb|AAN10812.1| arrest, isoform A [Drosophila melanogaster]
gi|220945910|gb|ACL85498.1| aret-PA [synthetic construct]
gi|220955600|gb|ACL90343.1| aret-PA [synthetic construct]
gi|272407017|gb|ACZ94249.1| arrest, isoform E [Drosophila melanogaster]
Length = 604
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 114/192 (59%), Gaps = 11/192 (5%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G P PD + K+FVG VPK+ E +R +FEE+G V + +++DK TG +GCC
Sbjct: 142 GEKEPDPDNI------KMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCC 195
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATE 156
F+ + T A +A ALHN TL G PIQ++ AD E E KLFVG LNK+ E
Sbjct: 196 FVTFYTRHAALKAQDALHNVKTLNGMYHPIQMKPADSENRN----ERKLFVGMLNKKLNE 251
Query: 157 KEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINA-LNGIYTMRGCDQP 215
+V ++F +G +E+ ++RD+ QS+GC FV ++ + A++AI L+ M GC P
Sbjct: 252 NDVRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCTSP 311
Query: 216 LTVRFADPKRPR 227
L V+FAD ++ +
Sbjct: 312 LVVKFADTQKEK 323
>gi|12852385|dbj|BAB29392.1| unnamed protein product [Mus musculus]
gi|148695566|gb|EDL27513.1| CUG triplet repeat, RNA binding protein 1, isoform CRA_b [Mus
musculus]
Length = 487
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++ +FS +G++
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDIRVMFSSFGQI 134
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 135 EECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 192
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 108
>gi|38570084|ref|NP_941955.1| CUGBP Elav-like family member 1 isoform 2 [Mus musculus]
gi|349585220|ref|NP_001231820.1| CUGBP Elav-like family member 1 isoform 2 [Mus musculus]
gi|349732093|ref|NP_001231832.1| CUGBP Elav-like family member 1 isoform 2 [Mus musculus]
gi|19857900|sp|P28659.2|CELF1_MOUSE RecName: Full=CUGBP Elav-like family member 1; Short=CELF-1;
AltName: Full=50 kDa nuclear polyadenylated RNA-binding
protein; AltName: Full=Brain protein F41; AltName:
Full=Bruno-like protein 2; AltName: Full=CUG triplet
repeat RNA-binding protein 1; Short=CUG-BP1; AltName:
Full=CUG-BP- and ETR-3-like factor 1; AltName:
Full=Deadenylation factor CUG-BP; AltName:
Full=Deadenylation factor EDEN-BP; AltName: Full=Embryo
deadenylation element-binding protein homolog;
Short=EDEN-BP homolog; AltName: Full=RNA-binding protein
BRUNOL-2
gi|12054715|emb|CAC20707.1| deadenylation factor EDEN-BP [Mus musculus]
Length = 486
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++ +FS +G++
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDIRVMFSSFGQI 134
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 135 EECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 192
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 108
>gi|301776386|ref|XP_002923617.1| PREDICTED: CUGBP Elav-like family member 5-like [Ailuropoda
melanoleuca]
Length = 418
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 111/175 (63%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++PLFE+ G + E+ ++KD TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E R G + KLFVG LNKQ +E++V +F P+G +++
Sbjct: 68 LHEQKTLPGMARPIQVKPADSE-SRGG--DRKLFVGMLNKQQSEEDVLRLFQPFGVIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+S A AAI+AL+G TM G L V+FAD + R
Sbjct: 125 TVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKER 179
>gi|354469942|ref|XP_003497371.1| PREDICTED: CUGBP Elav-like family member 1-like [Cricetulus
griseus]
Length = 513
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++ +FS +G++
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDIRVMFSSFGQI 161
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 162 EECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 219
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 135
>gi|344247846|gb|EGW03950.1| CUG-BP- and ETR-3-like factor 1 [Cricetulus griseus]
Length = 514
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++ +FS +G++
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDIRVMFSSFGQI 161
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 162 EECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 219
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 135
>gi|8745539|gb|AAF78957.1|AF267535_1 CUG-binding protein LYLQ isoform [Mus musculus]
Length = 486
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++ +FS +G++
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDIRVMFSSFGQI 134
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 135 EECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 192
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 108
>gi|348526886|ref|XP_003450950.1| PREDICTED: CUGBP Elav-like family member 3-like isoform 1
[Oreochromis niloticus]
Length = 458
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 109/175 (62%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y E A +A A
Sbjct: 8 KLFVGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ ++++V +F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSEGR---GEDRKLFVGMLGKQQSDEDVRRLFEPFGSIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN+L+G TM G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQGHAEAQAAINSLHGSRTMPGASSSLVVKFADTEKER 179
>gi|259089631|gb|ACV91671.1| AT31783p [Drosophila melanogaster]
Length = 810
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 114/192 (59%), Gaps = 11/192 (5%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G P PD + K+FVG VPK+ E +R +FEE+G V + +++DK TG +GCC
Sbjct: 348 GEKEPDPDNI------KMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCC 401
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATE 156
F+ + T A +A ALHN TL G PIQ++ AD E E KLFVG LNK+ E
Sbjct: 402 FVTFYTRRAALKAQDALHNVKTLNGMYHPIQMKPADSENRN----ERKLFVGMLNKKLNE 457
Query: 157 KEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINA-LNGIYTMRGCDQP 215
+V ++F +G +E+ ++RD+ QS+GC FV ++ + A++AI L+ M GC P
Sbjct: 458 NDVRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCTSP 517
Query: 216 LTVRFADPKRPR 227
L V+FAD ++ +
Sbjct: 518 LVVKFADTQKEK 529
>gi|70794748|ref|NP_001020592.1| CUGBP Elav-like family member 1 [Rattus norvegicus]
gi|81918148|sp|Q4QQT3.1|CELF1_RAT RecName: Full=CUGBP Elav-like family member 1; Short=CELF-1;
AltName: Full=Bruno-like protein 2; AltName: Full=CUG
triplet repeat RNA-binding protein 1; Short=CUG-BP1;
AltName: Full=CUG-BP- and ETR-3-like factor 1; AltName:
Full=RNA-binding protein BRUNOL-2
gi|67678292|gb|AAH98012.1| CUG triplet repeat, RNA binding protein 1 [Rattus norvegicus]
Length = 487
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++ +FS +G++
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDIRVMFSSFGQI 134
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 135 EECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 192
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 108
>gi|326674562|ref|XP_002664812.2| PREDICTED: CUGBP Elav-like family member 3-like [Danio rerio]
Length = 442
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 111/175 (63%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D++P+FE++G + E+ +IKDK TG +GC F+ Y E A +A A
Sbjct: 8 KLFIGQIPRNLEEKDLKPIFEQYGKIYELTVIKDKYTGMHKGCAFLTYCARESAIKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ ++++V +IF P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSEGR---GEDRKLFVGMLGKQQSDEDVRKIFEPFGGIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A +AIN+L+G T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQSHSEAQSAINSLHGSRTLPGASSSLVVKFADTEKER 179
>gi|149022603|gb|EDL79497.1| CUG triplet repeat, RNA binding protein 1, isoform CRA_b [Rattus
norvegicus]
Length = 486
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++ +FS +G++
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDIRVMFSSFGQI 134
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 135 EECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 192
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 108
>gi|74140245|dbj|BAE33820.1| unnamed protein product [Mus musculus]
Length = 486
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++ +FS +G++
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDIRVMFSSFGQI 134
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 135 EECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 192
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 108
>gi|403220835|dbj|BAM38968.1| ribonucleoprotein [Theileria orientalis strain Shintoku]
Length = 604
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/190 (42%), Positives = 119/190 (62%), Gaps = 10/190 (5%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+ +P+ +EEDIR LFEE G V +V +IKDK T + C F+K A+ +AD AIR+
Sbjct: 88 KLFIARIPRDHKEEDIRKLFEEFGTVEDVTIIKDKATNVPKNCAFVKMASICQADAAIRS 147
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEY---------KLFVGSLNKQATEKEVEEIF 163
L+NQHT+ G+G +Q+RYA GE ERLG + KLFVGSL + +E++++++F
Sbjct: 148 LNNQHTVEPGLGAVQIRYATGEPERLGFTQMVGEPGVDTAKLFVGSLPRSFSEQDLQDLF 207
Query: 164 SPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
YG + +LM+D ++GCGFV+ +++ AL AI L+ ++ +P+ VRFA
Sbjct: 208 KDYGDAVETFLMKDMNSGGNKGCGFVRMRYKEQALYAIRELDHKKMVKDSVKPIEVRFAQ 267
Query: 223 PKRPRPGDSR 232
K P D R
Sbjct: 268 SKNAAPQDPR 277
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 56/84 (66%)
Query: 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEAD 107
G AKLFVGS+P++ E+D++ LF+++G+ +E L+KD +G +GC F++ E+A
Sbjct: 183 GVDTAKLFVGSLPRSFSEQDLQDLFKDYGDAVETFLMKDMNSGGNKGCGFVRMRYKEQAL 242
Query: 108 RAIRALHNQHTLPGGVGPIQVRYA 131
AIR L ++ + V PI+VR+A
Sbjct: 243 YAIRELDHKKMVKDSVKPIEVRFA 266
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 560 SWTEHTSPDGYKYYYNCVTGVSKWEKPEEL 589
+W E+ SPDG YY+N TG ++WE P +
Sbjct: 334 AWREYISPDGRFYYFNVETGSTQWEVPRDF 363
>gi|432852724|ref|XP_004067353.1| PREDICTED: CUGBP Elav-like family member 3-A-like isoform 3
[Oryzias latipes]
Length = 454
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+ Y E A +A A
Sbjct: 43 KLFIGQIPRNLEEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESALKAQSA 102
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ +E +V +F +G++E+
Sbjct: 103 LHEQKTLPGMNRPIQVKPADSEGR---GEDRKLFVGMLGKQQSEDDVRRLFETFGQIEEC 159
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+S A AAIN+L+G TM G L V+FAD + R
Sbjct: 160 TVLRGPDGASKGCAFVKFSSHAEAQAAINSLHGGQTMPGASSSLVVKFADTDKER 214
Score = 39.3 bits (90), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 125 PIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSR 183
P+Q YA G + G LF+ L ++ + E+ ++F P+G V + D QS+
Sbjct: 352 PLQQAYA-GVQHYAGPEGCNLFIYHLPQEFGDAELMQMFLPFGNVISAKVFVDRATNQSK 410
Query: 184 GCGFVKYSHRDMALAAINALNGI 206
GFV + + A AAI A+NG
Sbjct: 411 CFGFVSFDNPSSAQAAIQAMNGF 433
>gi|2148976|gb|AAB58464.1| bruno [Drosophila melanogaster]
Length = 604
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 114/192 (59%), Gaps = 11/192 (5%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G P PD + K+FVG VPK+ E +R +FEE+G V + +++DK TG +GCC
Sbjct: 142 GEKEPDPDNI------KMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCC 195
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATE 156
F+ + T A +A ALHN TL G PIQ++ AD E E KLFVG LNK+ E
Sbjct: 196 FVTFYTRRAALKAQDALHNVKTLNGMYHPIQMKPADSENRN----ERKLFVGMLNKKLNE 251
Query: 157 KEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINA-LNGIYTMRGCDQP 215
+V ++F +G +E+ ++RD+ QS+GC FV ++ + A++AI L+ M GC P
Sbjct: 252 NDVRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCTSP 311
Query: 216 LTVRFADPKRPR 227
L V+FAD ++ +
Sbjct: 312 LVVKFADTQKEK 323
>gi|38570086|ref|NP_059064.2| CUGBP Elav-like family member 1 isoform 1 [Mus musculus]
gi|148695567|gb|EDL27514.1| CUG triplet repeat, RNA binding protein 1, isoform CRA_c [Mus
musculus]
Length = 513
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++ +FS +G++
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDIRVMFSSFGQI 161
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 162 EECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 219
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 135
>gi|149022602|gb|EDL79496.1| CUG triplet repeat, RNA binding protein 1, isoform CRA_a [Rattus
norvegicus]
Length = 513
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++ +FS +G++
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDIRVMFSSFGQI 161
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 162 EECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 219
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 135
>gi|74150748|dbj|BAE25504.1| unnamed protein product [Mus musculus]
Length = 486
Score = 157 bits (396), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++ +FS +G++
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDIRVMFSSFGQI 134
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 135 EECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 192
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 108
>gi|194217895|ref|XP_001492139.2| PREDICTED: CUGBP, Elav-like family member 1 isoform 1 [Equus
caballus]
gi|345783918|ref|XP_533186.3| PREDICTED: CUGBP, Elav-like family member 1 isoform 1 [Canis lupus
familiaris]
gi|410973721|ref|XP_003993296.1| PREDICTED: CUGBP Elav-like family member 1 isoform 3 [Felis catus]
Length = 482
Score = 157 bits (396), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++ +FS +G++
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDIRVMFSSFGQI 134
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 135 EECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 192
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 108
>gi|442627567|ref|NP_723738.2| arrest, isoform F [Drosophila melanogaster]
gi|440213732|gb|AAN10811.2| arrest, isoform F [Drosophila melanogaster]
Length = 620
Score = 157 bits (396), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 114/192 (59%), Gaps = 11/192 (5%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G P PD + K+FVG VPK+ E +R +FEE+G V + +++DK TG +GCC
Sbjct: 142 GEKEPDPDNI------KMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCC 195
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATE 156
F+ + T A +A ALHN TL G PIQ++ AD E E KLFVG LNK+ E
Sbjct: 196 FVTFYTRHAALKAQDALHNVKTLNGMYHPIQMKPADSENRN----ERKLFVGMLNKKLNE 251
Query: 157 KEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINA-LNGIYTMRGCDQP 215
+V ++F +G +E+ ++RD+ QS+GC FV ++ + A++AI L+ M GC P
Sbjct: 252 NDVRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCTSP 311
Query: 216 LTVRFADPKRPR 227
L V+FAD ++ +
Sbjct: 312 LVVKFADTQKEK 323
>gi|395815677|ref|XP_003781351.1| PREDICTED: CUGBP Elav-like family member 1 [Otolemur garnettii]
Length = 510
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++ +FS +G++
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDIRVMFSSFGQI 161
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 162 EECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 219
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 135
>gi|363744097|ref|XP_003642972.1| PREDICTED: CUGBP, Elav-like family member 4 [Gallus gallus]
Length = 495
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 116/205 (56%), Gaps = 5/205 (2%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G + G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 25 PSTNGHMNGLNHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 84
Query: 85 KDKKTG--QQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE 142
KD+ + GC F+ Y E A +A ALH Q TLPG PIQV+ AD E G +
Sbjct: 85 KDRAQLPLKSMGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESR--GGKD 142
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINA 202
KLFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A AAINA
Sbjct: 143 RKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINA 202
Query: 203 LNGIYTMRGCDQPLTVRFADPKRPR 227
L+G TM G L V+FAD + R
Sbjct: 203 LHGSQTMPGASSSLVVKFADTDKER 227
>gi|148695568|gb|EDL27515.1| CUG triplet repeat, RNA binding protein 1, isoform CRA_d [Mus
musculus]
gi|148695569|gb|EDL27516.1| CUG triplet repeat, RNA binding protein 1, isoform CRA_d [Mus
musculus]
Length = 499
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 30 KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 89
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++ +FS +G++
Sbjct: 90 NALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDIRVMFSSFGQI 147
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 148 EECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 205
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 30 KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 89
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 90 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 121
>gi|426245410|ref|XP_004016504.1| PREDICTED: CUGBP Elav-like family member 1 [Ovis aries]
Length = 486
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++ +FS +G++
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDIRVMFSSFGQI 134
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 135 EECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 192
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 108
>gi|321460482|gb|EFX71524.1| hypothetical protein DAPPUDRAFT_227924 [Daphnia pulex]
Length = 403
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 115/187 (61%), Gaps = 10/187 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
P PD + K+FVG +P++ E D+R +FE++G V +V +++DK +GQ +GCCF+ +
Sbjct: 9 PDPDAI------KMFVGQIPRSMDENDLRKMFEDYGQVHQVNVLRDKISGQSKGCCFVTF 62
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVE 160
++A +A +HN TL G PIQ++ AD E E KLFVG L+K+ +E +V
Sbjct: 63 YKRKDALQAQNDMHNIKTLSGMHHPIQMKPADSENRN----ERKLFVGMLSKKISENDVR 118
Query: 161 EIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220
+FS YG +E+ ++RD SRGC FV ++ R A+ AI ++ TM GC P+ V+F
Sbjct: 119 IMFSAYGSIEECTVLRDNNNISRGCAFVTFTSRQSAVTAIKTVHHSQTMEGCSSPMVVKF 178
Query: 221 ADPKRPR 227
AD ++ +
Sbjct: 179 ADTQKEK 185
>gi|195435047|ref|XP_002065513.1| GK15493 [Drosophila willistoni]
gi|194161598|gb|EDW76499.1| GK15493 [Drosophila willistoni]
Length = 866
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 114/192 (59%), Gaps = 11/192 (5%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G P PD + K+FVG VPK+ E +R +FEE+G V + +++DK TG +GCC
Sbjct: 370 GEKEPDPDNI------KMFVGQVPKSMDETQLREMFEEYGAVHSINVLRDKATGISKGCC 423
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATE 156
F+ + T A +A ALHN TL G PIQ++ AD E E KLFVG LNK+ E
Sbjct: 424 FVTFYTRRAALKAQDALHNVKTLNGMYHPIQMKPADSENRN----ERKLFVGMLNKKLNE 479
Query: 157 KEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINA-LNGIYTMRGCDQP 215
+V ++F +G +E+ ++RD+ QS+GC FV ++ + A++AI L+ M GC P
Sbjct: 480 NDVRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCTSP 539
Query: 216 LTVRFADPKRPR 227
L V+FAD ++ +
Sbjct: 540 LVVKFADTQKEK 551
>gi|343961815|dbj|BAK62495.1| CUG triplet repeat RNA-binding protein 1 [Pan troglodytes]
Length = 483
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++ +FS +G++
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDIRVMFSSFGQI 134
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 135 EECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 192
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 108
>gi|432852726|ref|XP_004067354.1| PREDICTED: CUGBP Elav-like family member 3-A-like isoform 4
[Oryzias latipes]
Length = 494
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+ Y E A +A A
Sbjct: 43 KLFIGQIPRNLEEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESALKAQSA 102
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ +E +V +F +G++E+
Sbjct: 103 LHEQKTLPGMNRPIQVKPADSEGR---GEDRKLFVGMLGKQQSEDDVRRLFETFGQIEEC 159
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+S A AAIN+L+G TM G L V+FAD + R
Sbjct: 160 TVLRGPDGASKGCAFVKFSSHAEAQAAINSLHGGQTMPGASSSLVVKFADTDKER 214
>gi|441646598|ref|XP_004090758.1| PREDICTED: CUGBP Elav-like family member 1 [Nomascus leucogenys]
gi|383415255|gb|AFH30841.1| CUGBP Elav-like family member 1 isoform 4 [Macaca mulatta]
gi|384939404|gb|AFI33307.1| CUGBP Elav-like family member 1 isoform 4 [Macaca mulatta]
gi|387540328|gb|AFJ70791.1| CUGBP Elav-like family member 1 isoform 4 [Macaca mulatta]
gi|410259332|gb|JAA17632.1| CUGBP, Elav-like family member 1 [Pan troglodytes]
gi|410298516|gb|JAA27858.1| CUGBP, Elav-like family member 1 [Pan troglodytes]
gi|410357404|gb|JAA44564.1| CUGBP, Elav-like family member 1 [Pan troglodytes]
Length = 509
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++ +FS +G++
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDIRVMFSSFGQI 161
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 162 EECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 219
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 135
>gi|194861289|ref|XP_001969750.1| GG23776 [Drosophila erecta]
gi|190661617|gb|EDV58809.1| GG23776 [Drosophila erecta]
Length = 837
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 114/192 (59%), Gaps = 11/192 (5%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G P PD + K+FVG VPK+ E +R +FEE+G V + +++DK TG +GCC
Sbjct: 363 GEKEPDPDNI------KMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCC 416
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATE 156
F+ + T A +A ALHN TL G PIQ++ AD E E KLFVG LNK+ E
Sbjct: 417 FVTFYTRRAALKAQDALHNVKTLNGMYHPIQMKPADSENRN----ERKLFVGMLNKKLNE 472
Query: 157 KEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINA-LNGIYTMRGCDQP 215
+V ++F +G +E+ ++RD+ QS+GC FV ++ + A++AI L+ M GC P
Sbjct: 473 NDVRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCTSP 532
Query: 216 LTVRFADPKRPR 227
L V+FAD ++ +
Sbjct: 533 LVVKFADTQKEK 544
>gi|395815679|ref|XP_003781352.1| PREDICTED: CUGBP Elav-like family member 1 [Otolemur garnettii]
Length = 482
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++ +FS +G++
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDIRVMFSSFGQI 134
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 135 EECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 192
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 108
>gi|291384970|ref|XP_002709144.1| PREDICTED: CUG triplet repeat, RNA-binding protein 1-like
[Oryctolagus cuniculus]
Length = 483
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++ +FS +G++
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDIRVMFSSFGQI 134
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 135 EECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 192
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 108
>gi|38570081|ref|NP_941989.1| CUGBP Elav-like family member 1 isoform 2 [Homo sapiens]
gi|332259916|ref|XP_003279030.1| PREDICTED: CUGBP Elav-like family member 1 [Nomascus leucogenys]
gi|402893568|ref|XP_003909964.1| PREDICTED: CUGBP Elav-like family member 1 isoform 2 [Papio anubis]
gi|8745537|gb|AAF78956.1|AF267534_1 CUG-binding protein A isoform [Homo sapiens]
gi|21411010|gb|AAH31079.1| CUG triplet repeat, RNA binding protein 1 [Homo sapiens]
gi|119588317|gb|EAW67911.1| CUG triplet repeat, RNA binding protein 1, isoform CRA_f [Homo
sapiens]
gi|123994083|gb|ABM84643.1| CUG triplet repeat, RNA binding protein 1 [synthetic construct]
Length = 483
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++ +FS +G++
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDIRVMFSSFGQI 134
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 135 EECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 192
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 108
>gi|5729794|ref|NP_006551.1| CUGBP Elav-like family member 1 isoform 1 [Homo sapiens]
gi|402893570|ref|XP_003909965.1| PREDICTED: CUGBP Elav-like family member 1 isoform 3 [Papio anubis]
gi|1518802|gb|AAC50895.1| CUG-BP/hNab50 [Homo sapiens]
gi|119588313|gb|EAW67907.1| CUG triplet repeat, RNA binding protein 1, isoform CRA_b [Homo
sapiens]
gi|380783235|gb|AFE63493.1| CUGBP Elav-like family member 1 isoform 1 [Macaca mulatta]
gi|410222890|gb|JAA08664.1| CUGBP, Elav-like family member 1 [Pan troglodytes]
Length = 482
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++ +FS +G++
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDIRVMFSSFGQI 134
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 135 EECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 192
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 108
>gi|281340493|gb|EFB16077.1| hypothetical protein PANDA_010600 [Ailuropoda melanoleuca]
Length = 486
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++ +FS +G++
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDIRVMFSSFGQI 134
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 135 EECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 192
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 108
>gi|338712050|ref|XP_003362651.1| PREDICTED: CUGBP, Elav-like family member 1 isoform 3 [Equus
caballus]
gi|410973719|ref|XP_003993295.1| PREDICTED: CUGBP Elav-like family member 1 isoform 2 [Felis catus]
Length = 486
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++ +FS +G++
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDIRVMFSSFGQI 134
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 135 EECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 192
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 108
>gi|431915767|gb|ELK16100.1| CUG-BP- and ETR-3-like factor 1 [Pteropus alecto]
Length = 513
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++ +FS +G++
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDIRVMFSSFGQI 161
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 162 EECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 219
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 135
>gi|155372145|ref|NP_001094682.1| CUGBP Elav-like family member 1 [Bos taurus]
gi|154425935|gb|AAI51434.1| CUGBP1 protein [Bos taurus]
gi|296479665|tpg|DAA21780.1| TPA: CUG triplet repeat, RNA-binding protein 1 [Bos taurus]
Length = 486
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++ +FS +G++
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDIRVMFSSFGQI 134
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 135 EECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 192
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 108
>gi|348558646|ref|XP_003465128.1| PREDICTED: CUGBP Elav-like family member 1-like [Cavia porcellus]
Length = 513
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++ +FS +G++
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDIRVMFSSFGQI 161
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 162 EECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 219
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 135
>gi|71164871|ref|NP_001020767.1| CUGBP Elav-like family member 1 isoform 3 [Homo sapiens]
gi|17374605|sp|Q92879.2|CELF1_HUMAN RecName: Full=CUGBP Elav-like family member 1; Short=CELF-1;
AltName: Full=50 kDa nuclear polyadenylated RNA-binding
protein; AltName: Full=Bruno-like protein 2; AltName:
Full=CUG triplet repeat RNA-binding protein 1;
Short=CUG-BP1; AltName: Full=CUG-BP- and ETR-3-like
factor 1; AltName: Full=Deadenylation factor CUG-BP;
AltName: Full=Embryo deadenylation element-binding
protein homolog; Short=EDEN-BP homolog; AltName:
Full=RNA-binding protein BRUNOL-2
gi|8745535|gb|AAF78955.1|AF267533_1 CUG-binding protein LYLQ isoform [Homo sapiens]
gi|9246973|gb|AAF86230.1|AF248648_1 RNA-binding protein BRUNOL2 [Homo sapiens]
gi|12053580|emb|CAC20566.1| deadenylation factor CUG-BP [Homo sapiens]
gi|119588315|gb|EAW67909.1| CUG triplet repeat, RNA binding protein 1, isoform CRA_d [Homo
sapiens]
gi|119588318|gb|EAW67912.1| CUG triplet repeat, RNA binding protein 1, isoform CRA_d [Homo
sapiens]
gi|387539216|gb|AFJ70235.1| CUGBP Elav-like family member 1 isoform 3 [Macaca mulatta]
Length = 486
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++ +FS +G++
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDIRVMFSSFGQI 134
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 135 EECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 192
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 108
>gi|119588312|gb|EAW67906.1| CUG triplet repeat, RNA binding protein 1, isoform CRA_a [Homo
sapiens]
Length = 487
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++ +FS +G++
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDIRVMFSSFGQI 134
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 135 EECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 192
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 108
>gi|432090407|gb|ELK23833.1| CUGBP Elav-like family member 1 [Myotis davidii]
Length = 513
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++ +FS +G++
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMISKKCTENDIRVMFSSFGQI 161
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 162 EECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 219
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKSNAVEDR 135
>gi|383415257|gb|AFH30842.1| CUGBP Elav-like family member 1 isoform 4 [Macaca mulatta]
gi|384939406|gb|AFI33308.1| CUGBP Elav-like family member 1 isoform 4 [Macaca mulatta]
gi|384944856|gb|AFI36033.1| CUGBP Elav-like family member 1 isoform 4 [Macaca mulatta]
gi|410222888|gb|JAA08663.1| CUGBP, Elav-like family member 1 [Pan troglodytes]
gi|410259328|gb|JAA17630.1| CUGBP, Elav-like family member 1 [Pan troglodytes]
gi|410259330|gb|JAA17631.1| CUGBP, Elav-like family member 1 [Pan troglodytes]
gi|410298512|gb|JAA27856.1| CUGBP, Elav-like family member 1 [Pan troglodytes]
gi|410298514|gb|JAA27857.1| CUGBP, Elav-like family member 1 [Pan troglodytes]
gi|410357300|gb|JAA44561.1| CUGBP, Elav-like family member 1 [Pan troglodytes]
gi|410357302|gb|JAA44562.1| CUGBP, Elav-like family member 1 [Pan troglodytes]
gi|410357304|gb|JAA44563.1| CUGBP, Elav-like family member 1 [Pan troglodytes]
Length = 513
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++ +FS +G++
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDIRVMFSSFGQI 161
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 162 EECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 219
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 135
>gi|195578717|ref|XP_002079210.1| GD23828 [Drosophila simulans]
gi|194191219|gb|EDX04795.1| GD23828 [Drosophila simulans]
Length = 821
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 114/192 (59%), Gaps = 11/192 (5%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G P PD + K+FVG VPK+ E +R +FEE+G V + +++DK TG +GCC
Sbjct: 347 GEKEPDPDNI------KMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCC 400
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATE 156
F+ + T A +A ALHN TL G PIQ++ AD E E KLFVG LNK+ E
Sbjct: 401 FVTFYTRRAALKAQDALHNVKTLNGMYHPIQMKPADSENRN----ERKLFVGMLNKKLNE 456
Query: 157 KEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINA-LNGIYTMRGCDQP 215
+V ++F +G +E+ ++RD+ QS+GC FV ++ + A++AI L+ M GC P
Sbjct: 457 NDVRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCTSP 516
Query: 216 LTVRFADPKRPR 227
L V+FAD ++ +
Sbjct: 517 LVVKFADTQKEK 528
>gi|119588314|gb|EAW67908.1| CUG triplet repeat, RNA binding protein 1, isoform CRA_c [Homo
sapiens]
gi|355566554|gb|EHH22933.1| hypothetical protein EGK_06290 [Macaca mulatta]
gi|355752163|gb|EHH56283.1| hypothetical protein EGM_05659 [Macaca fascicularis]
Length = 514
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++ +FS +G++
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDIRVMFSSFGQI 161
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 162 EECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 219
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 135
>gi|326675888|ref|XP_003200459.1| PREDICTED: CUGBP Elav-like family member 3-A-like [Danio rerio]
Length = 516
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+ Y E A +A A
Sbjct: 35 KLFIGQIPRNLEEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESALKAQSA 94
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E E KLFVG L KQ E++V +F +G++E+
Sbjct: 95 LHEQKTLPGMNRPIQVKPADSEGR---GEERKLFVGMLGKQQCEEDVRCLFEAFGQIEEC 151
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+S A AAIN+L+G TM G L V+FAD + R
Sbjct: 152 TVLRGPDGASKGCAFVKFSSHAEAQAAINSLHGGQTMPGASSSLVVKFADTDKER 206
>gi|341896837|gb|EGT52772.1| CBN-ETR-1 protein [Caenorhabditis brenneri]
Length = 585
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 118/201 (58%), Gaps = 5/201 (2%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
PSP D + K+FVG +P+ E D R LFE++G V +++DK T +GCCF+ +
Sbjct: 38 PSPSEPDSDTI-KMFVGQIPRNWNEVDCRRLFEQYGPVFSCNILRDKSTQASKGCCFVTF 96
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVE 160
++A A ALHN + G P+Q++ AD E E KLF+G L+K+ E+ +
Sbjct: 97 FHRKDAIEAQGALHNIKVIEGMHHPVQMKPADTENRN----ERKLFIGQLSKKHNEENLR 152
Query: 161 EIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220
EIFS YG++ED ++RD+ +SRGC FV +++R A+ A ++ TM GC PL V+F
Sbjct: 153 EIFSKYGQIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCSAPLVVKF 212
Query: 221 ADPKRPRPGDSRSGPTFGGPG 241
AD ++ + ++S T G G
Sbjct: 213 ADTQKDKDVKTKSLITGNGGG 233
>gi|326505362|dbj|BAK03068.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 601
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 72/187 (38%), Positives = 109/187 (58%), Gaps = 10/187 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
P PD + K+F G +P+ E ++R +FE+ G V ++ +++DK+TG+ +GCCF+ +
Sbjct: 32 PDPDAI------KMFCGQIPRNMHEAELRDMFEQFGPVFQLNVLRDKQTGESKGCCFVTF 85
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVE 160
+ + A A ALHN TL G PIQ++ AD E E KLFVG ++K E +
Sbjct: 86 YSRKSALDAQNALHNLRTLNGSHHPIQMKPADTENRN----ERKLFVGMVSKNLDEPNIR 141
Query: 161 EIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220
+F YG +ED ++RD +SRGC FV + R AL AI +++ TM GC PL V+F
Sbjct: 142 SLFQSYGTIEDCTVLRDANGKSRGCAFVTFQKRQCALNAIKSMHQSQTMEGCSSPLVVKF 201
Query: 221 ADPKRPR 227
AD + +
Sbjct: 202 ADTPKDK 208
>gi|195472345|ref|XP_002088461.1| GE18580 [Drosophila yakuba]
gi|194174562|gb|EDW88173.1| GE18580 [Drosophila yakuba]
Length = 830
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 114/192 (59%), Gaps = 11/192 (5%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G P PD + K+FVG VPK+ E +R +FEE+G V + +++DK TG +GCC
Sbjct: 356 GEKEPDPDNI------KMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCC 409
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATE 156
F+ + T A +A ALHN TL G PIQ++ AD E E KLFVG LNK+ E
Sbjct: 410 FVTFYTRRAALKAQDALHNVKTLNGMYHPIQMKPADSENRN----ERKLFVGMLNKKLNE 465
Query: 157 KEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINA-LNGIYTMRGCDQP 215
+V ++F +G +E+ ++RD+ QS+GC FV ++ + A++AI L+ M GC P
Sbjct: 466 NDVRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCTSP 525
Query: 216 LTVRFADPKRPR 227
L V+FAD ++ +
Sbjct: 526 LVVKFADTQKEK 537
>gi|410977611|ref|XP_003995197.1| PREDICTED: LOW QUALITY PROTEIN: CUGBP Elav-like family member 4
[Felis catus]
Length = 482
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 115/203 (56%), Gaps = 3/203 (1%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 27 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYK 144
KD+ TG +GC + + + A ++ ALH Q LP PIQV+ AD E G + K
Sbjct: 87 KDRFTGMHKGCALLSFCARDAALKSQTALHRQEVLPXMNRPIQVKPADSESR--GGKDRK 144
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALN 204
LFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A AAINAL+
Sbjct: 145 LFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALH 204
Query: 205 GIYTMRGCDQPLTVRFADPKRPR 227
G TM G L V+FAD + R
Sbjct: 205 GSQTMPGASSSLVVKFADTDKER 227
>gi|417411512|gb|JAA52190.1| Putative rna-binding protein etr-3 rrm superfamily, partial
[Desmodus rotundus]
Length = 541
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 72 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 131
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++ +FS +G++
Sbjct: 132 NALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDIRVMFSSFGQI 189
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 190 EECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 247
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 72 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 131
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 132 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 163
>gi|390176612|ref|XP_002132720.2| GA25725, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388858697|gb|EDY70122.2| GA25725, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 818
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 113/188 (60%), Gaps = 11/188 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
P PD + K+FVG +PK+ E +R +FEE+G V + +++DK TG +GCCF+ +
Sbjct: 358 PDPDNI------KMFVGQIPKSMDESQLREMFEEYGPVHSINVLRDKATGISKGCCFVTF 411
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVE 160
T A +A ALHN TL G PIQ++ AD E E KLFVG LNK+ E +V
Sbjct: 412 FTRRAALKAQDALHNVKTLAGMYHPIQMKPADSENRN----ERKLFVGMLNKKLNENDVR 467
Query: 161 EIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINA-LNGIYTMRGCDQPLTVR 219
++F +G +E+ ++RD+ QS+GC FV ++ + A++AI L+ M GC PL V+
Sbjct: 468 KLFEVHGNIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCTSPLVVK 527
Query: 220 FADPKRPR 227
FAD ++ +
Sbjct: 528 FADTQKEK 535
>gi|355677605|gb|AER96037.1| CUG triplet repeat, RNA binding protein 1 [Mustela putorius furo]
Length = 540
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 72 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 131
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++ +FS +G++
Sbjct: 132 NALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDIRVMFSSFGQI 189
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 190 EECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 247
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 72 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 131
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 132 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 163
>gi|301772548|ref|XP_002921692.1| PREDICTED: CUGBP Elav-like family member 1-like [Ailuropoda
melanoleuca]
Length = 512
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 113/177 (63%), Gaps = 4/177 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
ALHN LPG PIQ++ AD E+ + + KLF+G ++K+ TE ++ +FS +G++E
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNNVE--DRKLFIGMISKKCTENDIRVMFSSFGQIE 161
Query: 171 DVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 162 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 218
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ D +
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNNVEDRK 135
>gi|338712047|ref|XP_003362650.1| PREDICTED: CUGBP, Elav-like family member 1 isoform 2 [Equus
caballus]
gi|345783916|ref|XP_003432496.1| PREDICTED: CUGBP, Elav-like family member 1 [Canis lupus
familiaris]
gi|410973717|ref|XP_003993294.1| PREDICTED: CUGBP Elav-like family member 1 isoform 1 [Felis catus]
Length = 512
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 113/177 (63%), Gaps = 4/177 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
ALHN LPG PIQ++ AD E+ + + KLF+G ++K+ TE ++ +FS +G++E
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNNVE--DRKLFIGMISKKCTENDIRVMFSSFGQIE 161
Query: 171 DVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 162 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 218
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ D +
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNNVEDRK 135
>gi|289547568|ref|NP_001166111.1| CUGBP Elav-like family member 1 isoform 5 [Homo sapiens]
Length = 485
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 113/177 (63%), Gaps = 4/177 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
ALHN LPG PIQ++ AD E+ + + KLF+G ++K+ TE ++ +FS +G++E
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNVE--DRKLFIGMISKKCTENDIRVMFSSFGQIE 134
Query: 171 DVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 135 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 191
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ D +
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNVEDRK 108
>gi|432852728|ref|XP_004067355.1| PREDICTED: CUGBP Elav-like family member 3-A-like isoform 5
[Oryzias latipes]
Length = 443
Score = 155 bits (393), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+ Y E A +A A
Sbjct: 43 KLFIGQIPRNLEEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESALKAQSA 102
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ +E +V +F +G++E+
Sbjct: 103 LHEQKTLPGMNRPIQVKPADSEGR---GEDRKLFVGMLGKQQSEDDVRRLFETFGQIEEC 159
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+S A AAIN+L+G TM G L V+FAD + R
Sbjct: 160 TVLRGPDGASKGCAFVKFSSHAEAQAAINSLHGGQTMPGASSSLVVKFADTDKER 214
>gi|440903464|gb|ELR54119.1| CUGBP Elav-like family member 1 [Bos grunniens mutus]
Length = 512
Score = 155 bits (393), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 113/177 (63%), Gaps = 4/177 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
ALHN LPG PIQ++ AD E+ + + KLF+G ++K+ TE ++ +FS +G++E
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNNVE--DRKLFIGMISKKCTENDIRVMFSSFGQIE 161
Query: 171 DVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 162 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 218
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ D +
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNNVEDRK 135
>gi|195388102|ref|XP_002052729.1| GJ17715 [Drosophila virilis]
gi|194149186|gb|EDW64884.1| GJ17715 [Drosophila virilis]
Length = 831
Score = 155 bits (393), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 114/192 (59%), Gaps = 11/192 (5%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G P PD + K+FVG VPK+ E +R +FEE+G V + +++DK TG +GCC
Sbjct: 362 GEKEPDPDNI------KMFVGQVPKSMDEAQLREMFEEYGPVHSINVLRDKATGISKGCC 415
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATE 156
F+ + T A +A ALHN TL G PIQ++ AD E E KLFVG LNK+ E
Sbjct: 416 FVTFYTRRAALKAQDALHNVKTLNGMYHPIQMKPADSENRN----ERKLFVGMLNKKLNE 471
Query: 157 KEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINA-LNGIYTMRGCDQP 215
+V ++F +G +E+ ++RD+ QS+GC FV ++ + A++AI L+ M GC P
Sbjct: 472 NDVRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCTSP 531
Query: 216 LTVRFADPKRPR 227
L V+FAD ++ +
Sbjct: 532 LVVKFADTQKEK 543
>gi|194761400|ref|XP_001962917.1| GF14192 [Drosophila ananassae]
gi|190616614|gb|EDV32138.1| GF14192 [Drosophila ananassae]
Length = 852
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 114/192 (59%), Gaps = 11/192 (5%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G P PD + K+FVG VPK+ E +R +FEE+G V + +++DK TG +GCC
Sbjct: 376 GEKEPDPDNI------KMFVGQVPKSMDESQLREMFEEYGPVHSINVLRDKATGISKGCC 429
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATE 156
F+ + T A +A ALHN TL G PIQ++ AD E E KLFVG LNK+ E
Sbjct: 430 FVTFYTRRAALKAQDALHNVKTLNGMYHPIQMKPADSENRN----ERKLFVGMLNKKLNE 485
Query: 157 KEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINA-LNGIYTMRGCDQP 215
+V ++F +G +E+ ++RD+ QS+GC FV ++ + A++AI L+ M GC P
Sbjct: 486 NDVRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCTSP 545
Query: 216 LTVRFADPKRPR 227
L V+FAD ++ +
Sbjct: 546 LVVKFADTQKEK 557
>gi|289547566|ref|NP_001166110.1| CUGBP Elav-like family member 1 isoform 4 [Homo sapiens]
gi|109106411|ref|XP_001106041.1| PREDICTED: CUGBP, Elav-like family member 1 isoform 4 [Macaca
mulatta]
gi|296218064|ref|XP_002755281.1| PREDICTED: CUGBP Elav-like family member 1 [Callithrix jacchus]
gi|332259914|ref|XP_003279029.1| PREDICTED: CUGBP Elav-like family member 1 [Nomascus leucogenys]
gi|397488336|ref|XP_003815223.1| PREDICTED: CUGBP Elav-like family member 1 [Pan paniscus]
gi|402893566|ref|XP_003909963.1| PREDICTED: CUGBP Elav-like family member 1 isoform 1 [Papio anubis]
gi|168275618|dbj|BAG10529.1| CUG triplet repeat RNA-binding protein 1 [synthetic construct]
Length = 512
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 113/177 (63%), Gaps = 4/177 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
ALHN LPG PIQ++ AD E+ + + KLF+G ++K+ TE ++ +FS +G++E
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNNVE--DRKLFIGMISKKCTENDIRVMFSSFGQIE 161
Query: 171 DVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 162 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 218
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ D +
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNNVEDRK 135
>gi|195117924|ref|XP_002003495.1| GI17944 [Drosophila mojavensis]
gi|193914070|gb|EDW12937.1| GI17944 [Drosophila mojavensis]
Length = 851
Score = 155 bits (392), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 114/192 (59%), Gaps = 11/192 (5%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G P PD + K+FVG VPK+ E +R +FEE+G V + +++DK TG +GCC
Sbjct: 382 GEKEPDPDNI------KMFVGQVPKSMDEAQLREMFEEYGPVHSINVLRDKATGISKGCC 435
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATE 156
F+ + T A +A ALHN TL G PIQ++ AD E E KLF+G LNK+ E
Sbjct: 436 FVTFYTRRAALKAQDALHNVKTLSGMYHPIQMKPADSENRN----ERKLFIGMLNKKLNE 491
Query: 157 KEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINA-LNGIYTMRGCDQP 215
+V ++F +G +E+ ++RD+ QS+GC FV ++ + A++AI L+ M GC P
Sbjct: 492 NDVRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCTSP 551
Query: 216 LTVRFADPKRPR 227
L V+FAD ++ +
Sbjct: 552 LVVKFADTQKEK 563
>gi|344281041|ref|XP_003412289.1| PREDICTED: CUGBP Elav-like family member 1-like [Loxodonta
africana]
Length = 512
Score = 155 bits (392), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 113/177 (63%), Gaps = 4/177 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
ALHN LPG PIQ++ AD E+ + + KLF+G ++K+ TE ++ +FS +G++E
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNNVE--DRKLFIGMISKKCTENDIRVMFSSFGQIE 161
Query: 171 DVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 162 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 218
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ D +
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNNVEDRK 135
>gi|348526888|ref|XP_003450951.1| PREDICTED: CUGBP Elav-like family member 3-like isoform 2
[Oreochromis niloticus]
Length = 405
Score = 155 bits (392), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 109/175 (62%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y E A +A A
Sbjct: 8 KLFVGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ ++++V +F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSEGR---GEDRKLFVGMLGKQQSDEDVRRLFEPFGSIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN+L+G TM G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQGHAEAQAAINSLHGSRTMPGASSSLVVKFADTEKER 179
>gi|390338611|ref|XP_781047.3| PREDICTED: CUGBP Elav-like family member 3-A-like isoform 2
[Strongylocentrotus purpuratus]
Length = 520
Score = 155 bits (392), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 110/175 (62%), Gaps = 8/175 (4%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D+RP+FE+ G + E+ +++D+ TG +GC F+ Y E A RA +A
Sbjct: 49 KLFVGQIPRNLEEKDLRPIFEDFGRIYELTVLRDRFTGVHKGCAFLTYCDRESAIRAQKA 108
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG +QV+ AD E + KLFVG LNK TE+EV +F+ +G++++
Sbjct: 109 LHEQKTLPGMTRALQVKPADSESR---GEDRKLFVGMLNKAQTEEEVRAMFTHFGKIDEC 165
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+++D SRGC FVK+S R A+ AIN++N + L V+FAD ++ R
Sbjct: 166 TILKDPNGISRGCAFVKFSTRKEAVGAINSIN-----MSANPNLVVKFADTEKER 215
>gi|18858491|ref|NP_571688.1| CUGBP Elav-like family member 1 [Danio rerio]
gi|82247731|sp|Q9IBD0.1|CELF1_DANRE RecName: Full=CUGBP Elav-like family member 1; Short=CELF-1;
AltName: Full=Bruno-like protein 2; AltName: Full=CUG
triplet repeat RNA-binding protein 1; Short=CUG-BP1;
AltName: Full=CUG-BP- and ETR-3-like factor 1; AltName:
Full=EDEN-BP/Bruno-like protein; AltName:
Full=RNA-binding protein BRUNOL-2
gi|7670538|dbj|BAA95119.1| brul [Danio rerio]
Length = 501
Score = 155 bits (392), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 113/178 (63%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG +P+T E+ +R LFE +G V E+ +++D+ Q +GCCF+ Y T + A A
Sbjct: 17 KMFVGQIPRTWSEDQLRELFEPYGAVYEINVLRDRSQNPPQSKGCCFVTYYTRKSALEAQ 76
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLFVG ++K+ E ++ +FSPYG++
Sbjct: 77 NALHNMKILPGMHHPIQMKPADSEKNN--AVEDRKLFVGMISKKCNENDIRLMFSPYGQI 134
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA +AI +++ TM GC P+ V+FAD ++ +
Sbjct: 135 EECRILRGPDGLSRGCAFVTFTARQMAQSAIKSMHQSQTMEGCSSPIVVKFADTQKDK 192
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +E ++ E+F PYG V ++ ++RD + QS+GC FV Y R AL A
Sbjct: 17 KMFVGQIPRTWSEDQLRELFEPYGAVYEINVLRDRSQNPPQSKGCCFVTYYTRKSALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 77 NALHNMKILPGMHHPIQMKPADSEKNNAVEDR 108
>gi|152148404|gb|ABS29700.1| flowering time control protein [Stenogyne rugosa]
Length = 208
Score = 155 bits (391), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 128/209 (61%), Gaps = 19/209 (9%)
Query: 497 PSNQNLPLQQGSQGTKQQSQWAGIAPQTVASAPASA-PAADLPVSTSIGPAAPVSSQTVA 555
P+NQNL QQG KQQ+ WAG Q VASAP + PA DL STS+ PA +
Sbjct: 11 PANQNLTPQQGQLPAKQQTPWAGTLSQPVASAPGNNQPAGDLAASTSV-PATTCN----- 64
Query: 556 PAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQQQQQQKPPVQQPPSQLHSQVL 615
W+EH SPDG+KYYYN +TG SKWEKPEELTL+EQQQQQQKP Q P Q H
Sbjct: 65 -----WSEHMSPDGFKYYYNSLTGQSKWEKPEELTLYEQQQQQQKPSNQNPQVQSHPSGQ 119
Query: 616 PAQHIPQTQQVQLQTQLRQQQQQQLQH---PFSSSYQAPVVRGQH--NAQELGYTQLPPV 670
Q PQ QVQLQ + Q Q +H P SSYQ P + +Q+LGY Q+ P
Sbjct: 120 SIQQAPQM-QVQLQGHQQAQMHNQSKHFQQPAQSSYQVPAYSAKQGTKSQDLGYAQV-PT 177
Query: 671 AAGSVNNPTRFQQGLQAAQDWMWKNKPSG 699
A G +P+R+QQG+QA+Q+WMWKN+ S
Sbjct: 178 ATGQATDPSRYQQGVQASQEWMWKNRHSA 206
>gi|148228597|ref|NP_001084196.1| CUGBP Elav-like family member 1-A [Xenopus laevis]
gi|82227733|sp|O57406.1|CEL1A_XENLA RecName: Full=CUGBP Elav-like family member 1-A; Short=CELF-1A;
AltName: Full=Bruno-like protein 2-A; AltName: Full=CUG
triplet repeat RNA-binding protein 1-A; Short=CUG-BP1-A;
AltName: Full=CUG-BP- and ETR-3-like factor 1-A;
AltName: Full=Embryo deadenylation element-binding
protein A; Short=EDEN-BP-A; AltName: Full=RNA-binding
protein BRUNOL-2-A; AltName: Full=p53/p55
gi|2781419|gb|AAC41243.1| embryo deadenylation element binding protein [Xenopus laevis]
gi|80478529|gb|AAI08575.1| CUGBP1 protein [Xenopus laevis]
Length = 489
Score = 155 bits (391), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 117/190 (61%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG VP++ E+++R LFE++G V E+ +++D+ Q +GCCFI
Sbjct: 11 PDPDSI------KMFVGQVPRSWSEKELRELFEQYGAVYEINVLRDRSQNPPQSKGCCFI 64
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN LPG PIQ++ AD E+ AVE KLF+G ++K E
Sbjct: 65 TFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMVSKNCNEN 122
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV ++ R MA AI +++ TM GC P+
Sbjct: 123 DIRAMFSPFGQIEECRILRGPDGMSRGCAFVTFTTRSMAQMAIKSMHQAQTMEGCSSPIV 182
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 183 VKFADTQKDK 192
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE+ E+F YG V ++ ++RD + QS+GC F+ + R AL A
Sbjct: 17 KMFVGQVPRSWSEKELRELFEQYGAVYEINVLRDRSQNPPQSKGCCFITFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 108
>gi|126272943|ref|XP_001371226.1| PREDICTED: CUGBP Elav-like family member 6 isoform 1 [Monodelphis
domestica]
Length = 491
Score = 155 bits (391), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 109/175 (62%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+ Y + A +A A
Sbjct: 54 KLFVGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGVHKGCAFLTYCARDSALKAQSA 113
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ +E++V +F P+G++E+
Sbjct: 114 LHEQKTLPGMNRPIQVKPADSEGR---GEDRKLFVGMLGKQQSEEDVRRLFEPFGQIEEC 170
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ + A AAIN+L+G M G L V+FAD + R
Sbjct: 171 TILRGPDGTSKGCAFVKFGSQAEAQAAINSLHGSQNMPGASSSLVVKFADTDKER 225
>gi|148706791|gb|EDL38738.1| trinucleotide repeat containing 4, isoform CRA_d [Mus musculus]
Length = 538
Score = 155 bits (391), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 4/175 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 81 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 140
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 141 LHEQKTLPGMNRPIQVKPADSESRG----DRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 196
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 197 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 251
Score = 42.4 bits (98), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 455 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 514
Query: 204 NGI 206
NG
Sbjct: 515 NGF 517
>gi|148706790|gb|EDL38737.1| trinucleotide repeat containing 4, isoform CRA_c [Mus musculus]
Length = 567
Score = 155 bits (391), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 81 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 140
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 141 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 197
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 198 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 252
Score = 42.4 bits (98), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 484 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 543
Query: 204 NGI 206
NG
Sbjct: 544 NGF 546
>gi|68533093|dbj|BAE06101.1| CUGBP1 variant protein [Homo sapiens]
Length = 544
Score = 155 bits (391), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 113/177 (63%), Gaps = 4/177 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 76 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 135
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
ALHN LPG PIQ++ AD E+ + + KLF+G ++K+ TE ++ +FS +G++E
Sbjct: 136 NALHNMKVLPGMHHPIQMKPADSEKNNVE--DRKLFIGMISKKCTENDIRVMFSSFGQIE 193
Query: 171 DVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 194 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 250
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 76 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 135
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ D +
Sbjct: 136 NALHNMKVLPGMHHPIQMKPADSEKNNVEDRK 167
>gi|334314036|ref|XP_003339980.1| PREDICTED: CUGBP Elav-like family member 6 isoform 2 [Monodelphis
domestica]
Length = 464
Score = 155 bits (391), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 109/175 (62%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+ Y + A +A A
Sbjct: 54 KLFVGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGVHKGCAFLTYCARDSALKAQSA 113
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ +E++V +F P+G++E+
Sbjct: 114 LHEQKTLPGMNRPIQVKPADSEGR---GEDRKLFVGMLGKQQSEEDVRRLFEPFGQIEEC 170
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ + A AAIN+L+G M G L V+FAD + R
Sbjct: 171 TILRGPDGTSKGCAFVKFGSQAEAQAAINSLHGSQNMPGASSSLVVKFADTDKER 225
>gi|390176614|ref|XP_003736147.1| GA25725, isoform C [Drosophila pseudoobscura pseudoobscura]
gi|388858698|gb|EIM52220.1| GA25725, isoform C [Drosophila pseudoobscura pseudoobscura]
Length = 595
Score = 155 bits (391), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 113/188 (60%), Gaps = 11/188 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
P PD + K+FVG +PK+ E +R +FEE+G V + +++DK TG +GCCF+ +
Sbjct: 135 PDPDNI------KMFVGQIPKSMDESQLREMFEEYGPVHSINVLRDKATGISKGCCFVTF 188
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVE 160
T A +A ALHN TL G PIQ++ AD E E KLFVG LNK+ E +V
Sbjct: 189 FTRRAALKAQDALHNVKTLAGMYHPIQMKPADSENRN----ERKLFVGMLNKKLNENDVR 244
Query: 161 EIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINA-LNGIYTMRGCDQPLTVR 219
++F +G +E+ ++RD+ QS+GC FV ++ + A++AI L+ M GC PL V+
Sbjct: 245 KLFEVHGNIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCTSPLVVK 304
Query: 220 FADPKRPR 227
FAD ++ +
Sbjct: 305 FADTQKEK 312
>gi|60302694|ref|NP_001012539.1| CUGBP Elav-like family member 1 [Gallus gallus]
gi|60098733|emb|CAH65197.1| hypothetical protein RCJMB04_7f23 [Gallus gallus]
Length = 485
Score = 155 bits (391), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 114/178 (64%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP++ E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 17 KMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ E ++ +FSP+G++
Sbjct: 77 NALHNMKILPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCNENDIRVMFSPFGQI 134
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 135 EECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPIVVKFADTQKDK 192
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 77 NALHNMKILPGMHHPIQMKPADSEKNNAVEDR 108
>gi|380792869|gb|AFE68310.1| CUGBP Elav-like family member 3 isoform 1, partial [Macaca mulatta]
Length = 368
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
>gi|193204852|ref|NP_001122631.1| Protein ETR-1, isoform f [Caenorhabditis elegans]
gi|351063347|emb|CCD71502.1| Protein ETR-1, isoform f [Caenorhabditis elegans]
Length = 588
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 118/201 (58%), Gaps = 5/201 (2%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
PSP D + K+FVG +P+ E D R LFE++G+V +++DK T +GCCF+ +
Sbjct: 45 PSPSEPDTDAI-KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVE 160
++A A ALHN + G P+Q++ AD E E KLF+G L+K+ E+ +
Sbjct: 104 YHRKDAIEAQGALHNIKVIEGMHHPVQMKPADTENRN----ERKLFIGQLSKKHNEENLR 159
Query: 161 EIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220
EIF+ +G +ED ++RD+ +SRGC FV +++R A+ A ++ TM GC PL V+F
Sbjct: 160 EIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCSAPLVVKF 219
Query: 221 ADPKRPRPGDSRSGPTFGGPG 241
AD ++ + ++S T G G
Sbjct: 220 ADTQKDKDVKTKSMITGSGAG 240
>gi|449502234|ref|XP_002199924.2| PREDICTED: CUGBP Elav-like family member 1 [Taeniopygia guttata]
Length = 485
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 114/178 (64%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP++ E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 17 KMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ E ++ +FSP+G++
Sbjct: 77 NALHNMKILPGMHHPIQMKPADSEKSN--AVEDRKLFIGMISKKCNENDIRVMFSPFGQI 134
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 135 EECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPIVVKFADTQKDK 192
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 77 NALHNMKILPGMHHPIQMKPADSEKSNAVEDR 108
>gi|193204850|ref|NP_001122630.1| Protein ETR-1, isoform e [Caenorhabditis elegans]
gi|351063346|emb|CCD71501.1| Protein ETR-1, isoform e [Caenorhabditis elegans]
Length = 586
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 118/201 (58%), Gaps = 5/201 (2%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
PSP D + K+FVG +P+ E D R LFE++G+V +++DK T +GCCF+ +
Sbjct: 45 PSPSEPDTDAI-KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVE 160
++A A ALHN + G P+Q++ AD E E KLF+G L+K+ E+ +
Sbjct: 104 YHRKDAIEAQGALHNIKVIEGMHHPVQMKPADTENRN----ERKLFIGQLSKKHNEENLR 159
Query: 161 EIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220
EIF+ +G +ED ++RD+ +SRGC FV +++R A+ A ++ TM GC PL V+F
Sbjct: 160 EIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCSAPLVVKF 219
Query: 221 ADPKRPRPGDSRSGPTFGGPG 241
AD ++ + ++S T G G
Sbjct: 220 ADTQKDKDVKTKSMITGSGAG 240
>gi|351702706|gb|EHB05625.1| CUG-BP- and ETR-3-like factor 3 [Heterocephalus glaber]
Length = 381
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
>gi|147905119|ref|NP_001080695.1| CUGBP Elav-like family member 3-B [Xenopus laevis]
gi|82241483|sp|Q7ZWM3.1|CEL3B_XENLA RecName: Full=CUGBP Elav-like family member 3-B; Short=CELF3-B;
AltName: Full=Bruno-like protein 1-B; AltName:
Full=CUG-BP- and ETR-3-like factor 3-B; AltName:
Full=ELAV-type RNA-binding protein 1-B; Short=ETR-1-B;
AltName: Full=RNA-binding protein BRUNOL-1-B; AltName:
Full=Trinucleotide repeat-containing gene 4 protein B
gi|28422663|gb|AAH46942.1| Tnrc4-prov protein [Xenopus laevis]
Length = 462
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y E A +A A
Sbjct: 8 KLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V +F +G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRRMFETFGNIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAINAL+G T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHTEAQAAINALHGSRTLPGASSSLVVKFADTEKER 179
>gi|152013389|sp|Q5F3T7.2|CELF1_CHICK RecName: Full=CUGBP Elav-like family member 1; Short=CELF-1;
AltName: Full=Bruno-like protein 2; AltName: Full=CUG
triplet repeat RNA-binding protein 1; Short=CUG-BP1;
AltName: Full=CUG-BP- and ETR-3-like factor 1; AltName:
Full=RNA-binding protein BRUNOL-2
Length = 489
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 114/178 (64%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP++ E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 17 KMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ E ++ +FSP+G++
Sbjct: 77 NALHNMKILPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCNENDIRVMFSPFGQI 134
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 135 EECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPIVVKFADTQKDK 192
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 77 NALHNMKILPGMHHPIQMKPADSEKNNAVEDR 108
>gi|119588316|gb|EAW67910.1| CUG triplet repeat, RNA binding protein 1, isoform CRA_e [Homo
sapiens]
Length = 283
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++ +FS +G++
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKN--NAVEDRKLFIGMISKKCTENDIRVMFSSFGQI 134
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 135 EECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 192
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 108
>gi|170584368|ref|XP_001896973.1| RNA binding protein [Brugia malayi]
gi|158595662|gb|EDP34201.1| RNA binding protein, putative [Brugia malayi]
Length = 489
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 109/185 (58%), Gaps = 3/185 (1%)
Query: 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEE 105
V + KLFVG +P+ E+D+R LFE G + E ++KDK TG +GC F+ Y +
Sbjct: 20 VKDADTIKLFVGQIPRNLEEKDLRHLFETFGKIYEFTILKDKYTGLHKGCAFLTYCHRDS 79
Query: 106 ADRAIRALHNQHTLPGGVGPIQVRYADGE---RERLGAVEYKLFVGSLNKQATEKEVEEI 162
A R ALH+Q TLPG +QV+ AD E A E KLFVG L+KQ E +V +
Sbjct: 80 AVRCQAALHDQKTLPGMNRAMQVKPADNESRPESPKNAEERKLFVGMLSKQHNEDDVRSL 139
Query: 163 FSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
F+P+G +++V ++R S+GC FVK++ A AINAL+G TM G L V+FAD
Sbjct: 140 FAPFGVIDEVTVLRGADGLSKGCAFVKFATHSQAAMAINALHGSQTMPGASSSLVVKFAD 199
Query: 223 PKRPR 227
++ R
Sbjct: 200 TEKER 204
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 133 GERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYS 191
++E LG LF+ L ++ + E+ ++F P+G V + D QS+ GFV Y
Sbjct: 396 AQKEVLGPEGCNLFIYHLPQEFGDAELMQMFMPFGHVISAKVFIDRATNQSKCFGFVSYD 455
Query: 192 HRDMALAAINALNGI 206
+ A+AAI A+NG
Sbjct: 456 NTASAMAAIQAMNGF 470
>gi|62858167|ref|NP_001016491.1| CUG-BP- and ETR-3-like factor 3 [Xenopus (Silurana) tropicalis]
gi|89272955|emb|CAJ83148.1| trinucleotide repeat containing 4 [Xenopus (Silurana) tropicalis]
Length = 313
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 109/175 (62%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y E A +A A
Sbjct: 8 KLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V +F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRRMFEPFGNIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAINAL+G T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHTEAQAAINALHGSRTLPGASSSLVVKFADTEKER 179
>gi|151936115|gb|ABS18834.1| ELAV-type RNA binding protein variant C [Caenorhabditis elegans]
Length = 378
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 118/201 (58%), Gaps = 5/201 (2%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
PSP D + K+FVG +P+ E D R LFE++G+V +++DK T +GCCF+ +
Sbjct: 45 PSPSEPDTDAI-KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVE 160
++A A ALHN + G P+Q++ AD E E KLF+G L+K+ E+ +
Sbjct: 104 YHRKDAIEAQGALHNIKVIEGMHHPVQMKPADTENRN----ERKLFIGQLSKKHNEENLR 159
Query: 161 EIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220
EIF+ +G +ED ++RD+ +SRGC FV +++R A+ A ++ TM GC PL V+F
Sbjct: 160 EIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCSAPLVVKF 219
Query: 221 ADPKRPRPGDSRSGPTFGGPG 241
AD ++ + ++S T G G
Sbjct: 220 ADTQKDKDVKTKSMITGSGAG 240
>gi|449274607|gb|EMC83685.1| CUG-BP- and ETR-3-like factor 1 [Columba livia]
Length = 515
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 114/178 (64%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP++ E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 44 KMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ E ++ +FSP+G++
Sbjct: 104 NALHNMKILPGMHHPIQMKPADSEKSN--AVEDRKLFIGMISKKCNENDIRVMFSPFGQI 161
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 162 EECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPIVVKFADTQKDK 219
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 44 KMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 104 NALHNMKILPGMHHPIQMKPADSEKSNAVEDR 135
>gi|395501660|ref|XP_003755209.1| PREDICTED: CUGBP Elav-like family member 4-like [Sarcophilus
harrisii]
Length = 399
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 109/175 (62%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+ Y + A +A A
Sbjct: 23 KLFVGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGVHKGCAFLTYCARDSALKAQSA 82
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ +E++V +F P+G++E+
Sbjct: 83 LHEQKTLPGMNRPIQVKPADSEGR---GEDRKLFVGMLGKQQSEEDVRRLFEPFGQIEEC 139
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN+L+G TM G L V+FAD + R
Sbjct: 140 TILRGPDGTSKGCAFVKFGSHAEAQAAINSLHGSQTMPGASSSLVVKFADTDKER 194
>gi|326920382|ref|XP_003206453.1| PREDICTED: CUGBP Elav-like family member 1-like [Meleagris
gallopavo]
Length = 487
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 113/177 (63%), Gaps = 4/177 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP++ E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 17 KMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
ALHN LPG PIQ++ AD E+ + + KLF+G ++K+ E ++ +FSP+G++E
Sbjct: 77 NALHNMKILPGMHHPIQMKPADSEKNNVE--DRKLFIGMISKKCNENDIRVMFSPFGQIE 134
Query: 171 DVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 135 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPIVVKFADTQKDK 191
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ D +
Sbjct: 77 NALHNMKILPGMHHPIQMKPADSEKNNVEDRK 108
>gi|145306680|gb|ABP57104.1| CUG binding protein 1 [Gallus gallus]
Length = 487
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 113/177 (63%), Gaps = 4/177 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP++ E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 17 KMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
ALHN LPG PIQ++ AD E+ + + KLF+G ++K+ E ++ +FSP+G++E
Sbjct: 77 NALHNMKILPGMHHPIQMKPADSEKNNVE--DRKLFIGMISKKCNENDIRVMFSPFGQIE 134
Query: 171 DVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 135 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPIVVKFADTQKDK 191
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ D +
Sbjct: 77 NALHNMKILPGMHHPIQMKPADSEKNNVEDRK 108
>gi|324501916|gb|ADY40847.1| CUGBP Elav family member 4 [Ascaris suum]
Length = 501
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 109/185 (58%), Gaps = 3/185 (1%)
Query: 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEE 105
V S KLFVG +P+ E+D+R LFE G + E ++KDK TG +GC F+ Y +
Sbjct: 27 VKDSDAIKLFVGQIPRNLEEKDLRHLFESFGKIYEFTILKDKYTGLHKGCAFLTYCHRDS 86
Query: 106 ADRAIRALHNQHTLPGGVGPIQVRYADGE---RERLGAVEYKLFVGSLNKQATEKEVEEI 162
A R ALH+Q TLPG +QV+ AD E A E KLFVG L+KQ E +V +
Sbjct: 87 ALRCQAALHDQKTLPGMNRAMQVKPADSESRPNSPKNAEERKLFVGMLSKQQNEDDVRAL 146
Query: 163 FSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
F+P+G +++V ++R S+GC FVK++ A AI+AL+G TM G L V+FAD
Sbjct: 147 FAPFGAIDEVTVLRGADGLSKGCAFVKFAAHSQAAMAISALHGSQTMPGASSSLVVKFAD 206
Query: 223 PKRPR 227
++ R
Sbjct: 207 TEKER 211
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 134 ERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSH 192
++E LG LF+ L ++ + E+ ++F P+G V + D QS+ GF+ Y +
Sbjct: 409 QKEVLGPEGCNLFIYHLPQEFGDAELMQMFMPFGHVISAKVFIDRATNQSKCFGFISYDN 468
Query: 193 RDMALAAINALNGI 206
A+AAI A+NG
Sbjct: 469 SASAMAAIQAMNGF 482
>gi|17532857|ref|NP_493673.1| Protein ETR-1, isoform a [Caenorhabditis elegans]
gi|1289522|gb|AAA98566.1| elav-type ribonucleoprotein [Caenorhabditis elegans]
gi|151936111|gb|ABS18832.1| ELAV-type RNA binding protein variant A [Caenorhabditis elegans]
gi|351063336|emb|CCD71491.1| Protein ETR-1, isoform a [Caenorhabditis elegans]
Length = 584
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 113/189 (59%), Gaps = 4/189 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
K+FVG +P+ E D R LFE++G+V +++DK T +GCCF+ + ++A A A
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGA 115
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LHN + G P+Q++ AD E E KLF+G L+K+ E+ + EIF+ +G +ED
Sbjct: 116 LHNIKVIEGMHHPVQMKPADTENRN----ERKLFIGQLSKKHNEENLREIFAKFGHIEDC 171
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
++RD+ +SRGC FV +++R A+ A ++ TM GC PL V+FAD ++ + ++
Sbjct: 172 SVLRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCSAPLVVKFADTQKDKDVKTK 231
Query: 233 SGPTFGGPG 241
S T G G
Sbjct: 232 SMITGSGAG 240
>gi|431896648|gb|ELK06060.1| CUG-BP- and ETR-3-like factor 3 [Pteropus alecto]
Length = 419
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y E A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARESALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
Score = 44.3 bits (103), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 123 VGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQ 181
V P+Q YA G + G +F+ L ++ T+ EV ++F P+G V + D Q
Sbjct: 315 VDPLQQAYA-GMQHYTGPDGCNIFIYHLPQEFTDSEVLQMFVPFGHVISAKVFVDRATNQ 373
Query: 182 SRGCGFVKYSHRDMALAAINALNGI 206
S+ GFV + + A AAI A+NG
Sbjct: 374 SKCFGFVSFDNPASAQAAIQAMNGF 398
>gi|334314038|ref|XP_003339981.1| PREDICTED: CUGBP Elav-like family member 6 isoform 3 [Monodelphis
domestica]
Length = 470
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 109/175 (62%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+ Y + A +A A
Sbjct: 54 KLFVGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGVHKGCAFLTYCARDSALKAQSA 113
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ +E++V +F P+G++E+
Sbjct: 114 LHEQKTLPGMNRPIQVKPADSEGR---GEDRKLFVGMLGKQQSEEDVRRLFEPFGQIEEC 170
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ + A AAIN+L+G M G L V+FAD + R
Sbjct: 171 TILRGPDGTSKGCAFVKFGSQAEAQAAINSLHGSQNMPGASSSLVVKFADTDKER 225
>gi|193204854|ref|NP_001122632.1| Protein ETR-1, isoform g [Caenorhabditis elegans]
gi|151936119|gb|ABS18836.1| ELAV-type RNA binding protein variant E [Caenorhabditis elegans]
gi|351063348|emb|CCD71503.1| Protein ETR-1, isoform g [Caenorhabditis elegans]
Length = 513
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 113/189 (59%), Gaps = 4/189 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
K+FVG +P+ E D R LFE++G+V +++DK T +GCCF+ + ++A A A
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGA 115
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LHN + G P+Q++ AD E E KLF+G L+K+ E+ + EIF+ +G +ED
Sbjct: 116 LHNIKVIEGMHHPVQMKPADTENRN----ERKLFIGQLSKKHNEENLREIFAKFGHIEDC 171
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
++RD+ +SRGC FV +++R A+ A ++ TM GC PL V+FAD ++ + ++
Sbjct: 172 SVLRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCSAPLVVKFADTQKDKDVKTK 231
Query: 233 SGPTFGGPG 241
S T G G
Sbjct: 232 SMITGSGAG 240
>gi|324505949|gb|ADY42547.1| CUGBP Elav family member 4 [Ascaris suum]
Length = 476
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 109/185 (58%), Gaps = 3/185 (1%)
Query: 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEE 105
V S KLFVG +P+ E+D+R LFE G + E ++KDK TG +GC F+ Y +
Sbjct: 27 VKDSDAIKLFVGQIPRNLEEKDLRHLFESFGKIYEFTILKDKYTGLHKGCAFLTYCHRDS 86
Query: 106 ADRAIRALHNQHTLPGGVGPIQVRYADGE---RERLGAVEYKLFVGSLNKQATEKEVEEI 162
A R ALH+Q TLPG +QV+ AD E A E KLFVG L+KQ E +V +
Sbjct: 87 ALRCQAALHDQKTLPGMNRAMQVKPADSESRPNSPKNAEERKLFVGMLSKQQNEDDVRAL 146
Query: 163 FSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
F+P+G +++V ++R S+GC FVK++ A AI+AL+G TM G L V+FAD
Sbjct: 147 FAPFGAIDEVTVLRGADGLSKGCAFVKFAAHSQAAMAISALHGSQTMPGASSSLVVKFAD 206
Query: 223 PKRPR 227
++ R
Sbjct: 207 TEKER 211
Score = 44.7 bits (104), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 134 ERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSH 192
++E LG LF+ L ++ + E+ ++F P+G V + D QS+ GF+ Y +
Sbjct: 384 QKEVLGPEGCNLFIYHLPQEFGDAELMQMFMPFGHVISAKVFIDRATNQSKCFGFISYDN 443
Query: 193 RDMALAAINALNGI 206
A+AAI A+NG
Sbjct: 444 SASAMAAIQAMNGF 457
>gi|223996717|ref|XP_002288032.1| ribonuceoprotein [Thalassiosira pseudonana CCMP1335]
gi|220977148|gb|EED95475.1| ribonuceoprotein [Thalassiosira pseudonana CCMP1335]
Length = 356
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 112/177 (63%), Gaps = 7/177 (3%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG VPKT EED+ LFE +G ++++ +I+D++TG +GC F+ Y + E+A R +
Sbjct: 3 KLFVGQVPKTLAEEDLALLFEPYGRILDMTVIRDRRTGTHRGCAFVTYESGEDAMRVVNE 62
Query: 113 LHNQHTLPGGVGPIQVRYADGERER------LGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
+H ++ G + P QVR A GE E G KLFVG L ++A E V E+F+ Y
Sbjct: 63 MHGKYRFEGAMWPAQVRPAQGEIEEGDDERDEGDEMAKLFVGQLPREADEDFVRELFTSY 122
Query: 167 GRVEDVYLMRDELKQSR-GCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
G + +Y+++ +++ GC FVK+ RDMA AAI+AL+G + G D+P+ V+FAD
Sbjct: 123 GDITGIYIIKKRNNEAKNGCAFVKFRERDMAQAAIDALDGEVHLEGVDKPIRVKFAD 179
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 51/86 (59%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+G AKLFVG +P+ A E+ +R LF +G++ + +IK + + GC F+K+ + A
Sbjct: 94 EGDEMAKLFVGQLPREADEDFVRELFTSYGDITGIYIIKKRNNEAKNGCAFVKFRERDMA 153
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYAD 132
AI AL + L G PI+V++AD
Sbjct: 154 QAAIDALDGEVHLEGVDKPIRVKFAD 179
>gi|195035643|ref|XP_001989285.1| GH11642 [Drosophila grimshawi]
gi|193905285|gb|EDW04152.1| GH11642 [Drosophila grimshawi]
Length = 833
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 113/192 (58%), Gaps = 11/192 (5%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G P PD + K+FVG VPK+ E +R +FEE+G V + +++DK TG +GCC
Sbjct: 362 GEKEPDPDNI------KMFVGQVPKSMDEAQLREMFEEYGPVHSINVLRDKATGISKGCC 415
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATE 156
F+ + T A +A ALHN TL G PIQ++ AD E E KLFVG LNK+ E
Sbjct: 416 FVTFYTRRAALKAQDALHNVKTLNGMYHPIQMKPADSENRN----ERKLFVGMLNKKLNE 471
Query: 157 KEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINA-LNGIYTMRGCDQP 215
+V ++F +G +E+ ++RD QS+GC FV ++ + A++AI L+ M GC P
Sbjct: 472 NDVRKLFEVHGGIEECTVLRDPNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCTSP 531
Query: 216 LTVRFADPKRPR 227
L V+FAD ++ +
Sbjct: 532 LVVKFADTQKEK 543
>gi|84999108|ref|XP_954275.1| ribonucleoprotein [Theileria annulata]
gi|65305273|emb|CAI73598.1| ribonucleoprotein, putative [Theileria annulata]
Length = 515
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 110/179 (61%), Gaps = 10/179 (5%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFV +PKT E D+R LFEE G V +V +I+DK + + C F+K A+ +AD A+R
Sbjct: 118 KLFVARIPKTHEESDLRRLFEEFGVVKDVIVIRDKTSNAHKNCAFVKMASICQADAAVRR 177
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAV---------EYKLFVGSLNKQATEKEVEEIF 163
L+NQ + +G +Q+RYA GE ERLG E KLFVGSL K TE+++ +F
Sbjct: 178 LNNQRVIDSSLGAVQIRYATGEVERLGFTQMAGEPGVDEAKLFVGSLPKSLTEEDLSSLF 237
Query: 164 SPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221
+G +V++++D ++GCGFVK +++ AL AI LNG + G +PL VRFA
Sbjct: 238 KEFGEAMEVFVLKDLACGGNKGCGFVKMKYKEQALHAIKELNGKKMLEGSVRPLEVRFA 296
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 54/84 (64%)
Query: 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEAD 107
G AKLFVGS+PK+ EED+ LF+E G +EV ++KD G +GC F+K E+A
Sbjct: 213 GVDEAKLFVGSLPKSLTEEDLSSLFKEFGEAMEVFVLKDLACGGNKGCGFVKMKYKEQAL 272
Query: 108 RAIRALHNQHTLPGGVGPIQVRYA 131
AI+ L+ + L G V P++VR+A
Sbjct: 273 HAIKELNGKKMLEGSVRPLEVRFA 296
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQS-RGCGFVKYSHRDMALAA 199
VE KLFV + K E ++ +F +G V+DV ++RD+ + + C FVK + A AA
Sbjct: 115 VEIKLFVARIPKTHEESDLRRLFEEFGVVKDVIVIRDKTSNAHKNCAFVKMASICQADAA 174
Query: 200 INALNGIYTMRGCDQPLTVRFADPKRPRPG 229
+ LN + + +R+A + R G
Sbjct: 175 VRRLNNQRVIDSSLGAVQIRYATGEVERLG 204
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 561 WTEHTSPDGYKYYYNCVTGVSKWEKPEEL 589
W E+ SPDG YYYN G ++WE P+E
Sbjct: 359 WKEYISPDGRFYYYNIDNGTTQWEVPKEF 387
>gi|35505365|gb|AAH57553.1| Tnrc4 protein [Mus musculus]
Length = 494
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 411 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 470
Query: 204 NGI 206
NG
Sbjct: 471 NGF 473
>gi|194385764|dbj|BAG65257.1| unnamed protein product [Homo sapiens]
Length = 468
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 112/176 (63%), Gaps = 4/176 (2%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAIR 111
+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 1 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 60
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
ALHN LPG PIQ++ AD E+ + + KLF+G ++K+ TE ++ +FS +G++E+
Sbjct: 61 ALHNMKVLPGMHHPIQMKPADSEKNNVE--DRKLFIGMISKKCTENDIRVMFSSFGQIEE 118
Query: 172 VYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 119 CRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 174
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G + K E DIR +F G + E +++ G +GC F+ + T A AI+A
Sbjct: 91 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRAMAQTAIKA 149
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
+H T+ G P+ V++AD ++++
Sbjct: 150 MHQAQTMEGCSSPMVVKFADTQKDK 174
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAIN 201
+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A N
Sbjct: 1 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 60
Query: 202 ALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
AL+ + + G P+ ++ AD ++ D +
Sbjct: 61 ALHNMKVLPGMHHPIQMKPADSEKNNVEDRK 91
>gi|426230734|ref|XP_004009417.1| PREDICTED: CUGBP Elav-like family member 5 [Ovis aries]
Length = 579
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/194 (41%), Positives = 115/194 (59%), Gaps = 9/194 (4%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
G PD KLFVG +P+ E+D++PLFE+ G + E+ ++KD TG +GC F+
Sbjct: 58 GGQPDGTKDLDAIKLFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLT 117
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ AD E G + KLFVG LNKQ +E++V
Sbjct: 118 YCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESR--GGRDRKLFVGMLNKQQSEEDV 175
Query: 160 EEIFSPYGRVEDVYLMRDELKQSR------GCGFVKYSHRDMALAAINALNGIYTMRGCD 213
+F P+G +++ ++R +++R GC FVK+S A AAI+AL+G TM G
Sbjct: 176 LRLFQPFGVIDECTVLRGP-RRARWGGWGAGCAFVKFSSHTEAQAAIHALHGSQTMPGAS 234
Query: 214 QPLTVRFADPKRPR 227
L V+FAD + R
Sbjct: 235 SSLVVKFADTDKER 248
>gi|296228815|ref|XP_002759970.1| PREDICTED: CUGBP Elav-like family member 3 isoform 1 [Callithrix
jacchus]
Length = 465
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSENR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441
Query: 204 NGI 206
NG
Sbjct: 442 NGF 444
>gi|301767880|ref|XP_002919375.1| PREDICTED: CUGBP Elav-like family member 3-like [Ailuropoda
melanoleuca]
Length = 461
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
>gi|403302658|ref|XP_003941971.1| PREDICTED: CUGBP Elav-like family member 3 isoform 1 [Saimiri
boliviensis boliviensis]
gi|403302660|ref|XP_003941972.1| PREDICTED: CUGBP Elav-like family member 3 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 464
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSENR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 381 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 440
Query: 204 NGI 206
NG
Sbjct: 441 NGF 443
>gi|62857945|ref|NP_001017152.1| CUGBP Elav-like family member 1 [Xenopus (Silurana) tropicalis]
gi|123910258|sp|Q28HE9.1|CELF1_XENTR RecName: Full=CUGBP Elav-like family member 1; Short=CELF-1;
AltName: Full=Bruno-like protein 2; AltName: Full=CUG
triplet repeat RNA-binding protein 1; Short=CUG-BP1;
AltName: Full=CUG-BP- and ETR-3-like factor 1; AltName:
Full=RNA-binding protein BRUNOL-2
gi|89272922|emb|CAJ82289.1| CUG triplet repeat, RNA binding protein 1 [Xenopus (Silurana)
tropicalis]
Length = 490
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 76/190 (40%), Positives = 117/190 (61%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG VP++ E+++R LFE++G V E+ +++D+ Q +GCCFI
Sbjct: 11 PDPDSI------KMFVGQVPRSWSEKELRELFEQYGAVYEINVLRDRSQNPPQSKGCCFI 64
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN LPG PIQ++ AD E+ AVE KLFVG ++K+ E
Sbjct: 65 TFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFVGMVSKKCNEN 122
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FS +G++E+ ++R SRGC FV ++ R MA AI A++ TM GC P+
Sbjct: 123 DIRAMFSQFGQIEESRILRGPDGMSRGCAFVTFTTRSMAQMAIKAMHQAQTMEGCSSPIV 182
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 183 VKFADTQKDK 192
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE+ E+F YG V ++ ++RD + QS+GC F+ + R AL A
Sbjct: 17 KMFVGQVPRSWSEKELRELFEQYGAVYEINVLRDRSQNPPQSKGCCFITFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 108
>gi|27369577|ref|NP_766022.1| CUGBP Elav-like family member 3 [Mus musculus]
gi|81914478|sp|Q8CIN6.1|CELF3_MOUSE RecName: Full=CUGBP Elav-like family member 3; Short=CELF-3;
AltName: Full=Bruno-like protein 1; AltName:
Full=CUG-BP- and ETR-3-like factor 3; AltName:
Full=ELAV-type RNA-binding protein 1; Short=ETR-1;
AltName: Full=RNA-binding protein BRUNOL-1; AltName:
Full=Trinucleotide repeat-containing gene 4 protein
gi|25807803|gb|AAN73885.1| CUG-BP and ETR-3 like factor 3 [Mus musculus]
Length = 465
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 4/175 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESRG----DRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 123
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 124 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 178
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441
Query: 204 NGI 206
NG
Sbjct: 442 NGF 444
>gi|126313728|ref|XP_001366642.1| PREDICTED: CUGBP, Elav-like family member 3 isoform 1 [Monodelphis
domestica]
Length = 458
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSENR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 375 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 434
Query: 204 NGI 206
NG
Sbjct: 435 NGF 437
>gi|71297206|gb|AAH52491.1| Trinucleotide repeat containing 4 [Homo sapiens]
Length = 464
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAKAAINTLHSSRTLPGASSSLVVKFADTEKER 179
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 381 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 440
Query: 204 NGI 206
NG
Sbjct: 441 NGF 443
>gi|148706793|gb|EDL38740.1| trinucleotide repeat containing 4, isoform CRA_f [Mus musculus]
Length = 466
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 383 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 442
Query: 204 NGI 206
NG
Sbjct: 443 NGF 445
>gi|410968366|ref|XP_003990678.1| PREDICTED: CUGBP Elav-like family member 3 isoform 1 [Felis catus]
Length = 463
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 380 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 439
Query: 204 NGI 206
NG
Sbjct: 440 NGF 442
>gi|354503685|ref|XP_003513911.1| PREDICTED: CUGBP Elav-like family member 3 isoform 1 [Cricetulus
griseus]
Length = 491
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 408 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 467
Query: 204 NGI 206
NG
Sbjct: 468 NGF 470
>gi|219520290|gb|AAI43227.1| TNRC4 protein [Homo sapiens]
Length = 464
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 4/175 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESRG----DRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 123
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 124 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 178
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 381 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 440
Query: 204 NGI 206
NG
Sbjct: 441 NGF 443
>gi|354503687|ref|XP_003513912.1| PREDICTED: CUGBP Elav-like family member 3 isoform 2 [Cricetulus
griseus]
Length = 462
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 4/175 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESRG----DRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 123
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 124 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 178
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 379 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 438
Query: 204 NGI 206
NG
Sbjct: 439 NGF 441
>gi|332220299|ref|XP_003259294.1| PREDICTED: CUGBP Elav-like family member 3 [Nomascus leucogenys]
Length = 467
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 384 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 443
Query: 204 NGI 206
NG
Sbjct: 444 NGF 446
>gi|359321739|ref|XP_003639689.1| PREDICTED: CUGBP Elav-like family member 3-like isoform 1 [Canis
lupus familiaris]
Length = 462
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 379 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 438
Query: 204 NGI 206
NG
Sbjct: 439 NGF 441
>gi|71164894|ref|NP_009116.3| CUGBP Elav-like family member 3 isoform 1 [Homo sapiens]
gi|149751259|ref|XP_001492746.1| PREDICTED: CUGBP, Elav-like family member 3 isoform 1 [Equus
caballus]
gi|74756184|sp|Q5SZQ8.1|CELF3_HUMAN RecName: Full=CUGBP Elav-like family member 3; Short=CELF-3;
AltName: Full=Bruno-like protein 1; AltName: Full=CAG
repeat protein 4; AltName: Full=CUG-BP- and ETR-3-like
factor 3; AltName: Full=ELAV-type RNA-binding protein 1;
Short=ETR-1; AltName: Full=Expanded repeat domain
protein CAG/CTG 4; AltName: Full=RNA-binding protein
BRUNOL-1; AltName: Full=Trinucleotide repeat-containing
gene 4 protein
gi|85397642|gb|AAI04759.1| Trinucleotide repeat containing 4 [Homo sapiens]
gi|119573806|gb|EAW53421.1| trinucleotide repeat containing 4, isoform CRA_c [Homo sapiens]
gi|168278104|dbj|BAG11030.1| trinucleotide repeat-containing 4 protein [synthetic construct]
Length = 465
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441
Query: 204 NGI 206
NG
Sbjct: 442 NGF 444
>gi|355558428|gb|EHH15208.1| hypothetical protein EGK_01267 [Macaca mulatta]
Length = 469
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 386 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 445
Query: 204 NGI 206
NG
Sbjct: 446 NGF 448
>gi|348586638|ref|XP_003479075.1| PREDICTED: CUGBP Elav-like family member 3-like isoform 1 [Cavia
porcellus]
Length = 463
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 380 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 439
Query: 204 NGI 206
NG
Sbjct: 440 NGF 442
>gi|350583381|ref|XP_003481499.1| PREDICTED: CUGBP, Elav-like family member 3 isoform 1 [Sus scrofa]
gi|397492758|ref|XP_003817287.1| PREDICTED: CUGBP Elav-like family member 3 isoform 1 [Pan paniscus]
gi|426331463|ref|XP_004026700.1| PREDICTED: CUGBP Elav-like family member 3 isoform 1 [Gorilla
gorilla gorilla]
Length = 464
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 381 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 440
Query: 204 NGI 206
NG
Sbjct: 441 NGF 443
>gi|284005526|ref|NP_001164779.1| CUGBP Elav-like family member 3 [Oryctolagus cuniculus]
gi|217030863|gb|ACJ74025.1| trinucleotide repeat containing 4 (predicted) [Oryctolagus
cuniculus]
Length = 466
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 383 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 442
Query: 204 NGI 206
NG
Sbjct: 443 NGF 445
>gi|281182934|ref|NP_001162429.1| CUGBP Elav-like family member 3 [Papio anubis]
gi|163781027|gb|ABY40803.1| trinucleotide repeat containing 4 (predicted) [Papio anubis]
Length = 471
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 388 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 447
Query: 204 NGI 206
NG
Sbjct: 448 NGF 450
>gi|116003913|ref|NP_001070313.1| CUGBP Elav-like family member 3 [Bos taurus]
gi|122132428|sp|Q08E07.1|CELF3_BOVIN RecName: Full=CUGBP Elav-like family member 3; Short=CELF-3;
AltName: Full=Bruno-like protein 1; AltName:
Full=CUG-BP- and ETR-3-like factor 3; AltName:
Full=ELAV-type RNA-binding protein 1; Short=ETR-1;
AltName: Full=RNA-binding protein BRUNOL-1; AltName:
Full=Trinucleotide repeat-containing gene 4 protein
gi|115305254|gb|AAI23481.1| Trinucleotide repeat containing 4 [Bos taurus]
gi|296489556|tpg|DAA31669.1| TPA: CUG-BP- and ETR-3-like factor 3 [Bos taurus]
Length = 461
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 378 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 437
Query: 204 NGI 206
NG
Sbjct: 438 NGF 440
>gi|157821951|ref|NP_001102660.1| CUG-BP- and ETR-3-like factor 3 [Rattus norvegicus]
gi|149030747|gb|EDL85784.1| similar to trinucleotide repeat containing 4 (predicted), isoform
CRA_c [Rattus norvegicus]
Length = 473
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 390 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 449
Query: 204 NGI 206
NG
Sbjct: 450 NGF 452
>gi|183637597|gb|ACC64599.1| trinucleotide repeat containing 4 (predicted) [Rhinolophus
ferrumequinum]
Length = 459
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 376 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 435
Query: 204 NGI 206
NG
Sbjct: 436 NGF 438
>gi|25807801|gb|AAN73884.1| CUG-BP and ETR-3 like factor 3 [Homo sapiens]
Length = 465
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441
Query: 204 NGI 206
NG
Sbjct: 442 NGF 444
>gi|12746392|gb|AAK07474.1|AF329264_1 CUG-BP and ETR-3 like factor 3 [Homo sapiens]
Length = 462
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 379 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 438
Query: 204 NGI 206
NG
Sbjct: 439 NGF 441
>gi|395855962|ref|XP_003800412.1| PREDICTED: CUGBP Elav-like family member 3 [Otolemur garnettii]
Length = 475
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
Score = 41.2 bits (95), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 392 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 451
Query: 204 NGI 206
NG
Sbjct: 452 NGF 454
>gi|149632715|ref|XP_001509363.1| PREDICTED: CUGBP Elav-like family member 1 [Ornithorhynchus
anatinus]
Length = 513
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 72/178 (40%), Positives = 113/178 (63%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP++ E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 44 KMFVGQVPRSWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ E ++ +FS +G++
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCNENDIRVMFSSFGQI 161
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 162 EECRILRGPDGLSRGCAFVTFTTRSMAQTAIKAMHQAQTMEGCSSPIVVKFADTQKDK 219
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 44 KMFVGQVPRSWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 135
>gi|348545316|ref|XP_003460126.1| PREDICTED: CUGBP Elav-like family member 1-like isoform 2
[Oreochromis niloticus]
Length = 485
Score = 153 bits (386), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 72/178 (40%), Positives = 113/178 (63%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG +P++ EE +R LFE +G V E+ +++D+ Q +GCCF+ Y + + A A
Sbjct: 17 KMFVGQIPRSWSEEQLRELFEPYGAVYEINVLRDRSQNPPQSKGCCFVTYYSRKSALEAQ 76
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ E ++ +FSPYG++
Sbjct: 77 NALHNMKILPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCNENDIRLMFSPYGQI 134
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA +AI +++ TM GC P+ V+FAD ++ +
Sbjct: 135 EECRILRGPDGLSRGCAFVTFTARQMAQSAIKSMHQSQTMEGCSSPIVVKFADTQKDK 192
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +E+++ E+F PYG V ++ ++RD + QS+GC FV Y R AL A
Sbjct: 17 KMFVGQIPRSWSEEQLRELFEPYGAVYEINVLRDRSQNPPQSKGCCFVTYYSRKSALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 77 NALHNMKILPGMHHPIQMKPADSEKNNAVEDR 108
>gi|338725075|ref|XP_003365078.1| PREDICTED: CUGBP, Elav-like family member 3 isoform 3 [Equus
caballus]
gi|426331469|ref|XP_004026703.1| PREDICTED: CUGBP Elav-like family member 3 isoform 4 [Gorilla
gorilla gorilla]
gi|355758212|gb|EHH61449.1| hypothetical protein EGM_19912 [Macaca fascicularis]
Length = 419
Score = 153 bits (386), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
Score = 43.9 bits (102), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 123 VGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQ 181
V P+Q YA G + G +F+ L ++ T+ E+ ++F P+G V + D Q
Sbjct: 315 VDPLQQAYA-GMQHYTGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQ 373
Query: 182 SRGCGFVKYSHRDMALAAINALNGI 206
S+ GFV + + A AAI A+NG
Sbjct: 374 SKCFGFVSFDNPASAQAAIQAMNGF 398
>gi|410930632|ref|XP_003978702.1| PREDICTED: CUGBP Elav-like family member 1-like [Takifugu rubripes]
Length = 376
Score = 153 bits (386), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 113/178 (63%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG +P++ EE +R LFE +G V E+ +++D+ Q +GCCF+ Y T + A A
Sbjct: 17 KMFVGQIPRSWSEEQLRELFEPYGVVYEINVLRDRSQNPPQSKGCCFVTYYTRKSALEAQ 76
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ E ++ +FSPYG++
Sbjct: 77 NALHNMKILPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCNENDIRLMFSPYGQI 134
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA +AI +++ TM GC P+ V+FAD ++ +
Sbjct: 135 EECRILRGPDGLSRGCAFVTFTARQMAQSAIKSMHQSQTMEGCSSPIVVKFADTQKDK 192
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +E+++ E+F PYG V ++ ++RD + QS+GC FV Y R AL A
Sbjct: 17 KMFVGQIPRSWSEEQLRELFEPYGVVYEINVLRDRSQNPPQSKGCCFVTYYTRKSALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 77 NALHNMKILPGMHHPIQMKPADSEKNNAVEDR 108
>gi|344246977|gb|EGW03081.1| CUG-BP- and ETR-3-like factor 3 [Cricetulus griseus]
Length = 447
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
Score = 43.5 bits (101), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 123 VGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQ 181
V P+Q YA G + G +F+ L ++ T+ E+ ++F P+G V + D Q
Sbjct: 343 VDPLQQAYA-GMQHYTGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQ 401
Query: 182 SRGCGFVKYSHRDMALAAINALNGI 206
S+ GFV + + A AAI A+NG
Sbjct: 402 SKCFGFVSFDNPASAQAAIQAMNGF 426
>gi|228480217|ref|NP_001153184.1| CUGBP Elav-like family member 2 isoform 1 [Pongo abelii]
gi|55733625|emb|CAH93489.1| hypothetical protein [Pongo abelii]
Length = 514
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 119/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 35 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQIDVLRDRSQNPPQSKGCCFV 88
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 89 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 146
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ +++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 147 DIRVMFSPFGQIEECWILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 206
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 207 VKFADTQKDK 216
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 41 KMFVGQIPRSWSEKELKELFEPYGAVYQIDVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 100
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 101 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 132
Score = 39.3 bits (90), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 429 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 488
Query: 112 ALH 114
A++
Sbjct: 489 AMN 491
>gi|441603563|ref|XP_003262134.2| PREDICTED: LOW QUALITY PROTEIN: CUGBP Elav-like family member 4
[Nomascus leucogenys]
Length = 458
Score = 152 bits (385), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 116/210 (55%), Gaps = 9/210 (4%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 27 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV--- 141
KD+ TG +GC F+ Y E+A +A +H Q LP PIQV+ AD E +
Sbjct: 87 KDRFTGMHKGCSFLSYCQREQA-KAHSDMHKQEVLPXMNRPIQVKPADSESRGGSSCLRQ 145
Query: 142 ----EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMAL 197
+ KLFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A
Sbjct: 146 PPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQ 205
Query: 198 AAINALNGIYTMRGCDQPLTVRFADPKRPR 227
AAINAL+G TM G L V+FAD + R
Sbjct: 206 AAINALHGSQTMPGASSSLVVKFADTDKER 235
>gi|395535951|ref|XP_003769984.1| PREDICTED: CUGBP Elav-like family member 3 isoform 1 [Sarcophilus
harrisii]
Length = 458
Score = 152 bits (385), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSENR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 375 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 434
Query: 204 NGI 206
NG
Sbjct: 435 NGF 437
>gi|440911412|gb|ELR61086.1| CUGBP Elav-like family member 4 [Bos grunniens mutus]
Length = 487
Score = 152 bits (385), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 118/212 (55%), Gaps = 11/212 (5%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 27 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVG-PIQVRYADGERERLGAV-- 141
KD+ TG +GC F+ Y E A +A ALH GG+ PIQV+ AD E R G+
Sbjct: 87 KDRFTGMHKGCAFLTYCERESALKAQSALHADEKHLGGMNRPIQVKPADSE-SRGGSSCL 145
Query: 142 ------EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDM 195
+ KLFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS
Sbjct: 146 RQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAE 205
Query: 196 ALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
A AAINAL+G TM G L V+FAD + R
Sbjct: 206 AQAAINALHGSQTMPGASSSLVVKFADTDKER 237
>gi|387015318|gb|AFJ49778.1| CUGBP Elav-like family member 1-like [Crotalus adamanteus]
Length = 511
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 72/178 (40%), Positives = 113/178 (63%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP++ E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 44 KMFVGQVPRSWSEKDLRDLFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ E ++ +FS +G++
Sbjct: 104 NALHNMKILPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCNENDIRVMFSSFGQI 161
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 162 EECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPIVVKFADTQKDK 219
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ ++F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 44 KMFVGQVPRSWSEKDLRDLFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 104 NALHNMKILPGMHHPIQMKPADSEKNNAVEDR 135
>gi|393906351|gb|EJD74254.1| HrETR-1 protein [Loa loa]
Length = 507
Score = 152 bits (384), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 108/185 (58%), Gaps = 3/185 (1%)
Query: 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEE 105
V + KLFVG +P+ E+D+R LFE G + E ++KDK TG +GC F+ Y +
Sbjct: 38 VKDADTIKLFVGQIPRNLEEKDLRHLFETFGKIYEFTILKDKYTGLHKGCAFLTYCHRDS 97
Query: 106 ADRAIRALHNQHTLPGGVGPIQVRYADGERE---RLGAVEYKLFVGSLNKQATEKEVEEI 162
A R ALH+Q TLPG +QV+ AD E E KLFVG L+KQ E +V +
Sbjct: 98 AVRCQAALHDQKTLPGMNRAMQVKPADNESRPDSPKNVEERKLFVGMLSKQHNEDDVRAL 157
Query: 163 FSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
F+P+G +++V ++R S+GC FVK++ A AINAL+G TM G L V+FAD
Sbjct: 158 FAPFGVIDEVTVLRGADGLSKGCAFVKFATHSQAAMAINALHGSQTMPGASSSLVVKFAD 217
Query: 223 PKRPR 227
++ R
Sbjct: 218 TEKER 222
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 133 GERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYS 191
++E LG LF+ L ++ + E+ ++F P+G V + D QS+ GFV Y
Sbjct: 414 AQKEVLGPEGCNLFIYHLPQEFGDTELMQMFMPFGHVISAKVFIDRATNQSKCFGFVSYD 473
Query: 192 HRDMALAAINALNGI 206
+ A+AAI A+NG
Sbjct: 474 NTASAMAAIQAMNGF 488
>gi|444515071|gb|ELV10733.1| CUGBP Elav-like family member 3 [Tupaia chinensis]
Length = 431
Score = 152 bits (384), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
>gi|395543757|ref|XP_003773780.1| PREDICTED: CUGBP Elav-like family member 1 [Sarcophilus harrisii]
Length = 513
Score = 152 bits (384), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 72/178 (40%), Positives = 113/178 (63%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP++ E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 44 KMFVGQVPRSWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ E ++ +FS +G++
Sbjct: 104 NALHNMKILPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCNENDIRVMFSSFGQI 161
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 162 EECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPIVVKFADTQKDK 219
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 44 KMFVGQVPRSWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 104 NALHNMKILPGMHHPIQMKPADSEKNNAVEDR 135
>gi|268533976|ref|XP_002632118.1| C. briggsae CBR-ETR-1 protein [Caenorhabditis briggsae]
Length = 574
Score = 152 bits (383), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 117/201 (58%), Gaps = 5/201 (2%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
PSP D + K+FVG +P+ E D R LFE++G+V +++DK T +GCCF+ +
Sbjct: 42 PSPSEPDSDAI-KMFVGQIPRQWNEVDCRRLFEQYGSVYSCNILRDKSTQTSKGCCFVTF 100
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVE 160
++A A ALHN + G P+Q++ AD E E KLF+G L+K+ E+ +
Sbjct: 101 FHRKDAIEAQGALHNIKVIDGMHHPVQMKPADTENRN----ERKLFIGQLSKKHNEENLR 156
Query: 161 EIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220
EIF+ +G +ED ++RD +SRGC FV +++R A+ A ++ TM GC PL V+F
Sbjct: 157 EIFAKFGLIEDCSVLRDNDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCSAPLVVKF 216
Query: 221 ADPKRPRPGDSRSGPTFGGPG 241
AD ++ + ++S T G G
Sbjct: 217 ADTQKDKDVKTKSLITGNGAG 237
>gi|402592937|gb|EJW86864.1| ELAV-type RNA binding protein variant B [Wuchereria bancrofti]
Length = 509
Score = 152 bits (383), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 113/187 (60%), Gaps = 10/187 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
P PD + K+FVG +P++ E + R LFE+ G+V ++ +++DK T +GCCF+ Y
Sbjct: 17 PDPDAI------KMFVGQIPRSWGEAECRELFEQFGSVCQLNVLRDKVTQTSRGCCFVTY 70
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVE 160
+A A ALHN LP P+Q++ AD E E KLFVG LNK+ TE +V
Sbjct: 71 YKRADAIAAQAALHNIRVLPQMYHPVQMKPADIENRN----ERKLFVGMLNKKLTEDDVR 126
Query: 161 EIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220
E+F+ +G +ED +++D +SRGC FV ++HR A AI ++ TM GC +P+ V+F
Sbjct: 127 EMFAQFGHIEDCTVLKDSEGKSRGCAFVTFAHRSCAQQAIKQVHLSQTMEGCSKPIVVKF 186
Query: 221 ADPKRPR 227
AD ++ +
Sbjct: 187 ADTQKEK 193
>gi|340380143|ref|XP_003388583.1| PREDICTED: CUGBP Elav-like family member 4-like [Amphimedon
queenslandica]
Length = 494
Score = 152 bits (383), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 121/217 (55%), Gaps = 9/217 (4%)
Query: 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEAD 107
GS KLFVG VPK EED+RP E++G + E+ +++ K T Q +GC F+ Y + E A+
Sbjct: 55 GSESVKLFVGQVPKHFEEEDLRPYLEQYGPIGELLILRHKATRQHKGCAFVTYLSRESAE 114
Query: 108 RAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYG 167
A R LH++ LP P+QV A ++E L K+FVG L+K E V +F +G
Sbjct: 115 LAQRELHDKVILPTMTRPLQVNAAGTKQEEL----RKVFVGMLSKTIDESHVRSMFERFG 170
Query: 168 RVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+E++ +++D+ SRGC F+K+S R A +AIN ++G M G PL V++AD +R R
Sbjct: 171 HIEELTVLKDKDGYSRGCAFIKFSSRQEAQSAINEMHGSEIMAGASNPLVVKYADTERER 230
Query: 228 PGDS--RSGPTFGGPGFGPRFQPPSPRPPPNFGDPIT 262
++ F P FQ P P F +PI
Sbjct: 231 HARKMQKAMQQFAELSLNPVFQ---VLPHPQFFNPIV 264
>gi|74220804|dbj|BAE31371.1| unnamed protein product [Mus musculus]
Length = 440
Score = 152 bits (383), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 11 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 64
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 65 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 122
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 123 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 182
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 183 VKFADTQKDK 192
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 77 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 108
>gi|327259665|ref|XP_003214656.1| PREDICTED: CUGBP Elav-like family member 1-like [Anolis
carolinensis]
Length = 514
Score = 152 bits (383), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 112/177 (63%), Gaps = 4/177 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP++ E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 44 KMFVGQVPRSWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
ALHN LPG PIQ++ AD E+ + + KLF+G ++K+ E ++ +FS +G++E
Sbjct: 104 NALHNMKILPGMHHPIQMKPADSEKNNVE--DRKLFIGMISKKCNENDIRVMFSSFGQIE 161
Query: 171 DVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 162 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPIVVKFADTQKDK 218
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 44 KMFVGQVPRSWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ D +
Sbjct: 104 NALHNMKILPGMHHPIQMKPADSEKNNVEDRK 135
>gi|82237708|sp|Q6PF35.1|CEL1B_XENLA RecName: Full=CUGBP Elav-like family member 1-B; Short=CELF-1B;
AltName: Full=Bruno-like protein 2-B; AltName: Full=CUG
triplet repeat RNA-binding protein 1-B; Short=CUG-BP1-B;
AltName: Full=CUG-BP- and ETR-3-like factor 1-B;
AltName: Full=Embryo deadenylation element-binding
protein B; Short=EDEN-BP-B; AltName: Full=RNA-binding
protein BRUNOL-2-B; AltName: Full=p53/p55
gi|34784678|gb|AAH57743.1| Cugbp1-b protein [Xenopus laevis]
Length = 489
Score = 151 bits (382), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 117/188 (62%), Gaps = 6/188 (3%)
Query: 43 PDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKY 100
PD D S K+FVG VP++ E+++R LFE++G V E+ +++D+ Q +GCCFI +
Sbjct: 8 PDHPDSDSI-KMFVGQVPRSWSEKELRELFEQYGAVYEINVLRDRSQNPPQSKGCCFITF 66
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEV 159
T + A A ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ E ++
Sbjct: 67 YTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMVSKKCNENDI 124
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+FS +G++E+ ++R SRGC F+ ++ R MA AI A++ TM GC P+ V+
Sbjct: 125 RTLFSQFGQIEESRILRGPDGMSRGCAFITFTTRSMAQMAIKAMHQAQTMEGCSSPIVVK 184
Query: 220 FADPKRPR 227
FAD ++ +
Sbjct: 185 FADTQKDK 192
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE+ E+F YG V ++ ++RD + QS+GC F+ + R AL A
Sbjct: 17 KMFVGQVPRSWSEKELRELFEQYGAVYEINVLRDRSQNPPQSKGCCFITFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 108
>gi|426218925|ref|XP_004003685.1| PREDICTED: CUGBP Elav-like family member 3 [Ovis aries]
Length = 449
Score = 151 bits (382), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 366 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 425
Query: 204 NGI 206
NG
Sbjct: 426 NGF 428
>gi|334331817|ref|XP_001364287.2| PREDICTED: CUGBP Elav-like family member 1-like [Monodelphis
domestica]
Length = 512
Score = 151 bits (382), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 112/177 (63%), Gaps = 4/177 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP++ E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 44 KMFVGQVPRSWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
ALHN LPG PIQ++ AD E+ + + KLF+G ++K+ E ++ +FS +G++E
Sbjct: 104 NALHNMKILPGMHHPIQMKPADSEKNNVE--DRKLFIGMISKKCNENDIRVMFSSFGQIE 161
Query: 171 DVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 162 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPIVVKFADTQKDK 218
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 44 KMFVGQVPRSWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ D +
Sbjct: 104 NALHNMKILPGMHHPIQMKPADSEKNNVEDRK 135
>gi|449668124|ref|XP_002167931.2| PREDICTED: CUGBP Elav-like family member 2-like [Hydra
magnipapillata]
Length = 511
Score = 151 bits (382), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 110/176 (62%), Gaps = 3/176 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
KLF+G VP+ E+++RP+ E +G + E++++ DK TGQ +GC F+ + E A+R
Sbjct: 21 CKLFIGQVPRNWTEKELRPILEPYGEIHELSILYDKYTGQHKGCAFLVFYEKEAANRCQN 80
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
LH + TLPG V +QV+ A+ E + + KLF+G L+K+ E ++ +FSPYG +E+
Sbjct: 81 ELHEKRTLPGSVNKMQVKPAESE---IKTEDRKLFIGMLSKKLNEDDLRIMFSPYGTIEE 137
Query: 172 VYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++R+ S+GC F+KYS R A AI A++ TM C P+ V+ AD +R +
Sbjct: 138 LTILRNPDGGSKGCAFIKYSTRLQAQNAIKAMHNSQTMENCSSPVVVKIADTEREK 193
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G + K E+D+R +F +G + E+ ++++ G + GC FIKY+T +A AI+A
Sbjct: 110 KLFIGMLSKKLNEDDLRIMFSPYGTIEELTILRNPDGGSK-GCAFIKYSTRLQAQNAIKA 168
Query: 113 LHNQHTLPGGVGPIQVRYADGERERL 138
+HN T+ P+ V+ AD ERE++
Sbjct: 169 MHNSQTMENCSSPVVVKIADTEREKI 194
>gi|444707599|gb|ELW48864.1| CUGBP Elav-like family member 1 [Tupaia chinensis]
Length = 487
Score = 151 bits (382), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 74/179 (41%), Positives = 114/179 (63%), Gaps = 6/179 (3%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++ +FS +G++
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDIRVMFSSFGQI 134
Query: 170 EDVYLMRDELKQSR-GCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SR GC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 135 EECRILRGPDGLSRGGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 193
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 108
>gi|312068271|ref|XP_003137136.1| hypothetical protein LOAG_01549 [Loa loa]
gi|307767708|gb|EFO26942.1| hypothetical protein LOAG_01549 [Loa loa]
Length = 528
Score = 151 bits (382), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 113/194 (58%), Gaps = 10/194 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
P PD + K+FVG +P++ E + R LFE+ G+V ++ +++DK T +GCCF+ Y
Sbjct: 17 PDPDAI------KMFVGQIPRSWGEAECRELFEQFGSVCQLNVLRDKVTQASRGCCFVTY 70
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVE 160
+A A ALHN LP P+Q++ AD E E KLFVG LNK+ TE V
Sbjct: 71 YKRADAIAAQAALHNIRVLPQMYHPVQMKPADIENRN----ERKLFVGMLNKKLTEDSVR 126
Query: 161 EIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220
E+F+ +G +ED +++D +SRGC FV ++HR A AI ++ TM GC +P+ V+F
Sbjct: 127 EMFAQFGHIEDCTVLKDSEGKSRGCAFVTFAHRSCAQQAIRQVHLSQTMEGCSKPIVVKF 186
Query: 221 ADPKRPRPGDSRSG 234
AD ++ + G
Sbjct: 187 ADTQKEKDAKKSGG 200
>gi|344275414|ref|XP_003409507.1| PREDICTED: CUGBP Elav-like family member 3 [Loxodonta africana]
Length = 420
Score = 151 bits (382), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
Score = 40.0 bits (92), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 337 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 396
Query: 204 NGI 206
NG
Sbjct: 397 NGF 399
>gi|334324674|ref|XP_003340553.1| PREDICTED: CUGBP, Elav-like family member 3 [Monodelphis domestica]
Length = 408
Score = 151 bits (382), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSENR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 325 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 384
Query: 204 NGI 206
NG
Sbjct: 385 NGF 387
>gi|291232672|ref|XP_002736280.1| PREDICTED: bruno-2-like [Saccoglossus kowalevskii]
Length = 500
Score = 151 bits (382), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 110/187 (58%), Gaps = 9/187 (4%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
P PD + K+FVG +P++ E D+R EE G V ++ +++DK TGQ +GCCF+ Y
Sbjct: 27 PDPDAI------KMFVGQIPRSMDENDLREFLEEFGPVYQLNVLRDKVTGQSRGCCFVTY 80
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVE 160
T + A +A ALHN T+PG IQ++ AD E E KLFVG ++K+ E ++
Sbjct: 81 YTRKAALQAQNALHNVKTMPGMHHRIQMKPADSENRN---EERKLFVGMISKKCNEGDIR 137
Query: 161 EIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220
+F+P+G +E+ ++RD S+GC F+ +S + AL AI + TM GC L VRF
Sbjct: 138 LMFAPFGSIEECTVLRDAQGVSKGCAFITFSSKQSALNAIQNKHQSVTMEGCSSSLQVRF 197
Query: 221 ADPKRPR 227
A+ + R
Sbjct: 198 AETVKER 204
>gi|426241648|ref|XP_004014701.1| PREDICTED: LOW QUALITY PROTEIN: CUGBP Elav-like family member 2
[Ovis aries]
Length = 551
Score = 151 bits (382), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 119/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 85 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 138
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 139 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 196
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R+ SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 197 DIRVMFSPFGQIEECRILREPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 256
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 257 VKFADTQKDK 266
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 91 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 150
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 151 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 182
Score = 39.3 bits (90), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 466 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 525
Query: 112 ALH 114
A++
Sbjct: 526 AMN 528
>gi|348576693|ref|XP_003474121.1| PREDICTED: CUGBP Elav-like family member 4-like [Cavia porcellus]
Length = 477
Score = 151 bits (382), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 115/204 (56%), Gaps = 5/204 (2%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 27 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRAL-HNQHTLPGGVGPIQVRYADGERERLGAVEY 143
KD+ TG +GC F+ Y T A + L H +LPG PIQV+ AD E G +
Sbjct: 87 KDRFTGMHKGCAFL-YCTRHSASVTTQVLLHGAPSLPGMNRPIQVKPADSESR--GGKDR 143
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINAL 203
KLFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A AAINAL
Sbjct: 144 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINAL 203
Query: 204 NGIYTMRGCDQPLTVRFADPKRPR 227
+G TM G L V+FAD + R
Sbjct: 204 HGSQTMPGASSSLVVKFADTDKER 227
>gi|237757269|ref|NP_001153764.1| CUGBP Elav-like family member 2 isoform 7 [Mus musculus]
Length = 472
Score = 151 bits (382), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 47 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 100
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 101 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 158
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 159 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 218
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 219 VKFADTQKDK 228
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 53 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 112
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 113 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 144
>gi|395535953|ref|XP_003769985.1| PREDICTED: CUGBP Elav-like family member 3 isoform 2 [Sarcophilus
harrisii]
Length = 408
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSENR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 325 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 384
Query: 204 NGI 206
NG
Sbjct: 385 NGF 387
>gi|413948822|gb|AFW81471.1| hypothetical protein ZEAMMB73_420516 [Zea mays]
Length = 486
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 105/159 (66%), Gaps = 4/159 (2%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
KLFVG VPK E ++ +F V EV +I+D+ T +GCCF+ + EEAD+A+
Sbjct: 34 VKLFVGQVPKQMSEAELVAMFRGVALVDEVTVIRDRATRVSRGCCFLICPSREEADKAVT 93
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
A HN+ TLPG P+QV+YADGE ERL E+KLFVG L K T+ E+ ++FS YG ++D
Sbjct: 94 AYHNKRTLPGASSPLQVKYADGELERL---EHKLFVGMLPKNVTDAEMIDLFSKYGNIKD 150
Query: 172 VYLMRDELKQSR-GCGFVKYSHRDMALAAINALNGIYTM 209
+ ++R + S+ GC F+KY ++ A+AAI ALNG + +
Sbjct: 151 LQILRGSQQTSKAGCAFLKYETKEQAVAAIEALNGTHKI 189
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINA 202
KLFVG + KQ +E E+ +F V++V ++RD + SRGC F+ R+ A A+ A
Sbjct: 35 KLFVGQVPKQMSEAELVAMFRGVALVDEVTVIRDRATRVSRGCCFLICPSREEADKAVTA 94
Query: 203 LNGIYTMRGCDQPLTVRFADPKRPR 227
+ T+ G PL V++AD + R
Sbjct: 95 YHNKRTLPGASSPLQVKYADGELER 119
>gi|410033642|ref|XP_524868.3| PREDICTED: CUGBP, Elav-like family member 3 isoform 3 [Pan
troglodytes]
Length = 414
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
Score = 40.0 bits (92), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 331 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 390
Query: 204 NGI 206
NG
Sbjct: 391 NGF 393
>gi|70939105|ref|XP_740139.1| RNA binding protein [Plasmodium chabaudi chabaudi]
gi|56517645|emb|CAH76403.1| RNA binding protein, putative [Plasmodium chabaudi chabaudi]
Length = 248
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/162 (47%), Positives = 109/162 (67%), Gaps = 9/162 (5%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G VPK EE +RP+FEE G V EV +I+DK T + F+K A+ EAD AIR+
Sbjct: 86 KLFIGRVPKNYEEEQLRPIFEEFGIVNEVVIIRDKITNIHKSSAFVKMASISEADNAIRS 145
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLG---AVE-----YKLFVGSLNKQATEKEVEEIFS 164
L+NQ TL +G +QV+YA GE +LG VE KLF+GSL K TE+ ++++FS
Sbjct: 146 LNNQRTLDQQLGSLQVKYASGEVMKLGFPQNVESGVDQAKLFIGSLPKNITEESIKDMFS 205
Query: 165 PYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNG 205
YG VE+V++M+D +GC FVK+++++ AL AI++LNG
Sbjct: 206 VYGSVEEVFIMKDNSTGLGKGCSFVKFAYKEQALYAISSLNG 247
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
AKLF+GS+PK EE I+ +F +G+V EV ++KD TG +GC F+K+A E+A AI
Sbjct: 184 AKLFIGSLPKNITEESIKDMFSVYGSVEEVFIMKDNSTGLGKGCSFVKFAYKEQALYAIS 243
Query: 112 ALH 114
+L+
Sbjct: 244 SLN 246
Score = 40.0 bits (92), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAA 199
V KLF+G + K E+++ IF +G V +V ++RD++ + FVK + A A
Sbjct: 83 VSIKLFIGRVPKNYEEEQLRPIFEEFGIVNEVVIIRDKITNIHKSSAFVKMASISEADNA 142
Query: 200 INALNGIYTMRGCDQ---PLTVRFADPKRPRPG 229
I +LN R DQ L V++A + + G
Sbjct: 143 IRSLN---NQRTLDQQLGSLQVKYASGEVMKLG 172
>gi|359321741|ref|XP_003639690.1| PREDICTED: CUGBP Elav-like family member 3-like isoform 2 [Canis
lupus familiaris]
Length = 412
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 329 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 388
Query: 204 NGI 206
NG
Sbjct: 389 NGF 391
>gi|350583383|ref|XP_003481500.1| PREDICTED: CUGBP, Elav-like family member 3 isoform 2 [Sus scrofa]
gi|397492760|ref|XP_003817288.1| PREDICTED: CUGBP Elav-like family member 3 isoform 2 [Pan paniscus]
gi|426331465|ref|XP_004026701.1| PREDICTED: CUGBP Elav-like family member 3 isoform 2 [Gorilla
gorilla gorilla]
Length = 414
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 331 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 390
Query: 204 NGI 206
NG
Sbjct: 391 NGF 393
>gi|348586640|ref|XP_003479076.1| PREDICTED: CUGBP Elav-like family member 3-like isoform 2 [Cavia
porcellus]
gi|410968368|ref|XP_003990679.1| PREDICTED: CUGBP Elav-like family member 3 isoform 2 [Felis catus]
Length = 413
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 330 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 389
Query: 204 NGI 206
NG
Sbjct: 390 NGF 392
>gi|348545314|ref|XP_003460125.1| PREDICTED: CUGBP Elav-like family member 1-like isoform 1
[Oreochromis niloticus]
Length = 509
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 112/177 (63%), Gaps = 4/177 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG +P++ EE +R LFE +G V E+ +++D+ Q +GCCF+ Y + + A A
Sbjct: 44 KMFVGQIPRSWSEEQLRELFEPYGAVYEINVLRDRSQNPPQSKGCCFVTYYSRKSALEAQ 103
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
ALHN LPG PIQ++ AD E+ + + KLF+G ++K+ E ++ +FSPYG++E
Sbjct: 104 NALHNMKILPGMHHPIQMKPADSEKNNVE--DRKLFIGMISKKCNENDIRLMFSPYGQIE 161
Query: 171 DVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++R SRGC FV ++ R MA +AI +++ TM GC P+ V+FAD ++ +
Sbjct: 162 ECRILRGPDGLSRGCAFVTFTARQMAQSAIKSMHQSQTMEGCSSPIVVKFADTQKDK 218
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +E+++ E+F PYG V ++ ++RD + QS+GC FV Y R AL A
Sbjct: 44 KMFVGQIPRSWSEEQLRELFEPYGAVYEINVLRDRSQNPPQSKGCCFVTYYSRKSALEAQ 103
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ D +
Sbjct: 104 NALHNMKILPGMHHPIQMKPADSEKNNVEDRK 135
>gi|289547605|ref|NP_001166120.1| CUGBP Elav-like family member 3 isoform 3 [Homo sapiens]
gi|338725073|ref|XP_003365077.1| PREDICTED: CUGBP, Elav-like family member 3 isoform 2 [Equus
caballus]
gi|119573807|gb|EAW53422.1| trinucleotide repeat containing 4, isoform CRA_d [Homo sapiens]
Length = 415
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 332 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 391
Query: 204 NGI 206
NG
Sbjct: 392 NGF 394
>gi|426379623|ref|XP_004056491.1| PREDICTED: CUGBP Elav-like family member 6 isoform 4 [Gorilla
gorilla gorilla]
Length = 463
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 110/188 (58%), Gaps = 4/188 (2%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+
Sbjct: 35 GPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLT 93
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ A E + KLFVG L KQ E++V
Sbjct: 94 YCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQQGEEDV 150
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +E+ ++R S+GC FVK+ + A AAI L+G TM G L V+
Sbjct: 151 RRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMAGASSSLVVK 210
Query: 220 FADPKRPR 227
AD R R
Sbjct: 211 LADTDRER 218
>gi|71032751|ref|XP_766017.1| hypothetical protein [Theileria parva strain Muguga]
gi|68352974|gb|EAN33734.1| RNA-binding protein, putative [Theileria parva]
Length = 539
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 109/179 (60%), Gaps = 10/179 (5%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFV +PKT E D+R LF+E G V +V +I+DK T + C F+K A+ +AD A+R
Sbjct: 138 KLFVARIPKTYEESDLRRLFQEFGPVKDVIVIRDKVTNSHKNCAFVKMASICQADAAVRR 197
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAV---------EYKLFVGSLNKQATEKEVEEIF 163
L+NQ + +G +Q+RYA GE ERLG E KLFVGSL K TE ++ +F
Sbjct: 198 LNNQRVIDSSLGAVQIRYATGEVERLGFTQMAGEPGMDEAKLFVGSLPKSLTEDDLASLF 257
Query: 164 SPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221
+G +V++++D ++GCGFVK +++ AL AI LNG + G +PL VRFA
Sbjct: 258 KDFGEPLEVFVLKDLTCGGNKGCGFVKMKYKEQALYAIKELNGKKMLEGSIRPLEVRFA 316
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 54/84 (64%)
Query: 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEAD 107
G AKLFVGS+PK+ E+D+ LF++ G +EV ++KD G +GC F+K E+A
Sbjct: 233 GMDEAKLFVGSLPKSLTEDDLASLFKDFGEPLEVFVLKDLTCGGNKGCGFVKMKYKEQAL 292
Query: 108 RAIRALHNQHTLPGGVGPIQVRYA 131
AI+ L+ + L G + P++VR+A
Sbjct: 293 YAIKELNGKKMLEGSIRPLEVRFA 316
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQS-RGCGFVKYSHRDMALA 198
AV+ KLFV + K E ++ +F +G V+DV ++RD++ S + C FVK + A A
Sbjct: 134 AVDIKLFVARIPKTYEESDLRRLFQEFGPVKDVIVIRDKVTNSHKNCAFVKMASICQADA 193
Query: 199 AINALNGIYTMRGCDQPLTVRFADPKRPRPG 229
A+ LN + + +R+A + R G
Sbjct: 194 AVRRLNNQRVIDSSLGAVQIRYATGEVERLG 224
Score = 42.4 bits (98), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 561 WTEHTSPDGYKYYYNCVTGVSKWEKPEEL 589
W E+ SPDG YYYN G ++WE P+E
Sbjct: 381 WKEYISPDGRFYYYNIDNGTTQWEVPKEF 409
>gi|410960910|ref|XP_003987030.1| PREDICTED: CUGBP Elav-like family member 6 isoform 2 [Felis catus]
Length = 443
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 106/175 (60%), Gaps = 2/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ A E G + KLFVG L KQ E++V +F P+G +E+
Sbjct: 68 LHEQKTLPGMNRPIQVKPAASEGR--GGRDRKLFVGMLGKQQGEEDVRRLFQPFGHIEEC 125
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ + A AAI +L+G TM G L V+ AD R R
Sbjct: 126 TVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTMAGASSSLVVKLADTDRER 180
>gi|149030745|gb|EDL85782.1| similar to trinucleotide repeat containing 4 (predicted), isoform
CRA_b [Rattus norvegicus]
Length = 284
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 108/175 (61%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
>gi|296206140|ref|XP_002750082.1| PREDICTED: CUGBP Elav-like family member 2 [Callithrix jacchus]
Length = 531
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 54 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 107
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 108 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 165
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 166 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 225
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 226 VKFADTQKDK 235
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 60 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 119
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 120 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 151
Score = 39.3 bits (90), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 446 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 505
Query: 112 ALH 114
A++
Sbjct: 506 AMN 508
>gi|70780381|ref|NP_443072.3| CUGBP Elav-like family member 6 isoform 1 [Homo sapiens]
gi|74760888|sp|Q96J87.1|CELF6_HUMAN RecName: Full=CUGBP Elav-like family member 6; Short=CELF-6;
AltName: Full=Bruno-like protein 6; AltName:
Full=CUG-BP- and ETR-3-like factor 6; AltName:
Full=RNA-binding protein BRUNOL-6
gi|15341327|gb|AAK95615.1|AF401233_1 BRUNO-like 6 RNA-binding protein [Homo sapiens]
gi|17046404|gb|AAL34513.1|AF425606_1 RNA-binding protein CELF6 [Homo sapiens]
gi|119598307|gb|EAW77901.1| bruno-like 6, RNA binding protein (Drosophila), isoform CRA_b [Homo
sapiens]
Length = 481
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 110/188 (58%), Gaps = 4/188 (2%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+
Sbjct: 35 GPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLT 93
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ A E + KLFVG L KQ E++V
Sbjct: 94 YCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQQGEEDV 150
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +E+ ++R S+GC FVK+ + A AAI L+G TM G L V+
Sbjct: 151 RRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIRGLHGSRTMAGASSSLVVK 210
Query: 220 FADPKRPR 227
AD R R
Sbjct: 211 LADTDRER 218
>gi|21410087|gb|AAH30835.1| Bruno-like 6, RNA binding protein (Drosophila) [Homo sapiens]
Length = 481
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 110/188 (58%), Gaps = 4/188 (2%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+
Sbjct: 35 GPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLT 93
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ A E + KLFVG L KQ E++V
Sbjct: 94 YCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQQGEEDV 150
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +E+ ++R S+GC FVK+ + A AAI L+G TM G L V+
Sbjct: 151 RRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIRGLHGSRTMAGASSSLVVK 210
Query: 220 FADPKRPR 227
AD R R
Sbjct: 211 LADTDRER 218
>gi|402874763|ref|XP_003901197.1| PREDICTED: CUGBP Elav-like family member 6 isoform 1 [Papio anubis]
gi|387542958|gb|AFJ72106.1| CUGBP Elav-like family member 6 isoform 1 [Macaca mulatta]
Length = 481
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 110/188 (58%), Gaps = 4/188 (2%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+
Sbjct: 35 GPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLT 93
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ A E + KLFVG L KQ E++V
Sbjct: 94 YCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQQGEEDV 150
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +E+ ++R S+GC FVK+ + A AAI L+G TM G L V+
Sbjct: 151 RRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMAGASSSLVVK 210
Query: 220 FADPKRPR 227
AD R R
Sbjct: 211 LADTDRER 218
>gi|351703688|gb|EHB06607.1| CUG-BP- and ETR-3-like factor 2, partial [Heterocephalus glaber]
Length = 496
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 17 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 70
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 71 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 128
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 129 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 188
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 189 VKFADTQKDK 198
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 23 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 82
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 83 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 114
Score = 39.3 bits (90), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 411 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 470
Query: 112 ALH 114
A++
Sbjct: 471 AMN 473
>gi|124286791|ref|NP_034290.2| CUGBP Elav-like family member 2 isoform 6 [Mus musculus]
Length = 478
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 53 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 106
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 107 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 164
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 165 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 224
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 225 VKFADTQKDK 234
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 59 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 118
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 119 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 150
>gi|1568643|gb|AAB09040.1| RNA-binding protein BRUNOL3 [Homo sapiens]
Length = 490
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 11 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 64
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 65 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 122
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 123 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 182
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 183 VKFADTQKDK 192
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 77 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 108
>gi|159032035|ref|NP_001103700.1| CUGBP Elav-like family member 2 isoform 3 [Mus musculus]
gi|74227938|dbj|BAE37963.1| unnamed protein product [Mus musculus]
Length = 520
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 47 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 100
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 101 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 158
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 159 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 218
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 219 VKFADTQKDK 228
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 53 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 112
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 113 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 144
Score = 39.3 bits (90), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 435 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 494
Query: 112 ALH 114
A++
Sbjct: 495 AMN 497
>gi|301787201|ref|XP_002929016.1| PREDICTED: CUGBP Elav-like family member 2-like [Ailuropoda
melanoleuca]
Length = 488
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 11 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 64
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 65 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 122
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 123 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 182
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 183 VKFADTQKDK 192
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 77 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 108
Score = 39.3 bits (90), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 403 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 462
Query: 112 ALH 114
A++
Sbjct: 463 AMN 465
>gi|55731735|emb|CAH92572.1| hypothetical protein [Pongo abelii]
Length = 490
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 11 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 64
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 65 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 122
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 123 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 182
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 183 VKFADTQKDK 192
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 77 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 108
>gi|354467968|ref|XP_003496439.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 1
[Cricetulus griseus]
Length = 520
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 47 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 100
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 101 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 158
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 159 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 218
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 219 VKFADTQKDK 228
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 53 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 112
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 113 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 144
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+G A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A
Sbjct: 430 EGPEMANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSA 489
Query: 107 DRAIRALH 114
AI+A++
Sbjct: 490 QAAIQAMN 497
>gi|426379617|ref|XP_004056488.1| PREDICTED: CUGBP Elav-like family member 6 isoform 1 [Gorilla
gorilla gorilla]
Length = 481
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 110/188 (58%), Gaps = 4/188 (2%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+
Sbjct: 35 GPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLT 93
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ A E + KLFVG L KQ E++V
Sbjct: 94 YCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQQGEEDV 150
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +E+ ++R S+GC FVK+ + A AAI L+G TM G L V+
Sbjct: 151 RRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMAGASSSLVVK 210
Query: 220 FADPKRPR 227
AD R R
Sbjct: 211 LADTDRER 218
>gi|348575367|ref|XP_003473461.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 4 [Cavia
porcellus]
gi|354467974|ref|XP_003496442.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 4
[Cricetulus griseus]
Length = 478
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 53 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 106
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 107 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 164
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 165 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 224
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 225 VKFADTQKDK 234
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 59 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 118
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 119 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 150
>gi|397495530|ref|XP_003818605.1| PREDICTED: CUGBP Elav-like family member 6 isoform 1 [Pan paniscus]
Length = 481
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 110/188 (58%), Gaps = 4/188 (2%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+
Sbjct: 35 GPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLT 93
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ A E + KLFVG L KQ E++V
Sbjct: 94 YCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQQGEEDV 150
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +E+ ++R S+GC FVK+ + A AAI L+G TM G L V+
Sbjct: 151 RRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMAGASSSLVVK 210
Query: 220 FADPKRPR 227
AD R R
Sbjct: 211 LADTDRER 218
>gi|324507732|gb|ADY43273.1| CUGBP Elav family member 1-A [Ascaris suum]
gi|324510717|gb|ADY44479.1| CUGBP Elav family member 1-A, partial [Ascaris suum]
Length = 594
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 117/196 (59%), Gaps = 10/196 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
P PD + K+FVG +P++ E++ R LFE+ G+V ++ +++DK T +GCCF+ +
Sbjct: 32 PDPDTI------KMFVGQIPRSWGEQECRELFEQFGSVYQLNVLRDKTTQASRGCCFVTF 85
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVE 160
+A A ALHN LP P+Q++ AD E E KLFVG LNK+ TE++V+
Sbjct: 86 YRRADAIAAQAALHNIRVLPQMHHPVQMKPADSENRN----ERKLFVGMLNKRLTEEDVK 141
Query: 161 EIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220
+F+ +G +ED +++D +SRGC FV +++R A AI ++ TM GC P+ V+F
Sbjct: 142 AMFAHFGHIEDCTVLKDSDGKSRGCAFVTFANRSYAQQAIRLMHHSQTMEGCSTPIVVKF 201
Query: 221 ADPKRPRPGDSRSGPT 236
AD ++ + GP+
Sbjct: 202 ADTQKEKEAKKTVGPS 217
>gi|194375526|dbj|BAG56708.1| unnamed protein product [Homo sapiens]
Length = 496
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 19 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 72
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 73 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 130
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 131 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 190
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 191 VKFADTQKDK 200
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 25 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 84
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 85 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 116
Score = 39.3 bits (90), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 411 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 470
Query: 112 ALH 114
A++
Sbjct: 471 AMN 473
>gi|134152719|ref|NP_001077060.1| CUGBP Elav-like family member 2 isoform 4 [Homo sapiens]
gi|332833595|ref|XP_003312502.1| PREDICTED: CUGBP, Elav-like family member 2 isoform 2 [Pan
troglodytes]
gi|397515226|ref|XP_003827857.1| PREDICTED: CUGBP Elav-like family member 2 isoform 3 [Pan paniscus]
gi|403278085|ref|XP_003930659.1| PREDICTED: CUGBP Elav-like family member 2 isoform 2 [Saimiri
boliviensis boliviensis]
gi|16660677|gb|AAL27627.1|AF432906_1 neuroblastoma apoptosis-related RNA-binding protein isoform 4 [Homo
sapiens]
gi|119606752|gb|EAW86346.1| CUG triplet repeat, RNA binding protein 2, isoform CRA_a [Homo
sapiens]
gi|221046096|dbj|BAH14725.1| unnamed protein product [Homo sapiens]
gi|410263774|gb|JAA19853.1| CUGBP, Elav-like family member 2 [Pan troglodytes]
Length = 488
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 11 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 64
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 65 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 122
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 123 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 182
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 183 VKFADTQKDK 192
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 77 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 108
Score = 39.3 bits (90), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 403 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 462
Query: 112 ALH 114
A++
Sbjct: 463 AMN 465
>gi|29436780|gb|AAH49453.1| Cugbp1 protein [Danio rerio]
Length = 534
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 123/209 (58%), Gaps = 9/209 (4%)
Query: 22 SLPVPQLSGQKRGFSGRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEV 81
++ VP L G K+ P +D K+FVG +P+T E+ +R LFE +G V E+
Sbjct: 27 AVEVPALGGSKKMNGSLDHPDQPDIDS---IKMFVGQIPRTWSEDQLRELFEPYGAVYEI 83
Query: 82 ALIKDKKTG--QQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLG 139
+++D+ Q +GCCF+ Y T + A A ALHN LPG PIQ++ AD E+
Sbjct: 84 NVLRDRSQNPPQSKGCCFVTYYTRKSALEAQNALHNMKILPGMHHPIQMKPADSEKNN-- 141
Query: 140 AVE-YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALA 198
AVE KLFVG ++K+ E ++ +FSPYG++E+ ++R SR C FV ++ R MA +
Sbjct: 142 AVEDRKLFVGMISKKCNENDIRLMFSPYGQIEECRILRGPDGLSR-CAFVTFTARQMAQS 200
Query: 199 AINALNGIYTMRGCDQPLTVRFADPKRPR 227
AI +++ TM GC P+ V+FAD ++ +
Sbjct: 201 AIKSMHQSQTMEGCSSPIVVKFADTQKDK 229
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +E ++ E+F PYG V ++ ++RD + QS+GC FV Y R AL A
Sbjct: 55 KMFVGQIPRTWSEDQLRELFEPYGAVYEINVLRDRSQNPPQSKGCCFVTYYTRKSALEAQ 114
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 115 NALHNMKILPGMHHPIQMKPADSEKNNAVEDR 146
>gi|74142177|dbj|BAE31857.1| unnamed protein product [Mus musculus]
Length = 495
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 18 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 71
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 72 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 129
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 130 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 189
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 190 VKFADTQKDK 199
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 24 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 83
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 84 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 115
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+G+ A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A
Sbjct: 405 EGTEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSA 464
Query: 107 DRAIRALH 114
AI+A++
Sbjct: 465 QAAIQAMN 472
>gi|302565316|ref|NP_001180884.1| CUGBP Elav-like family member 6 [Macaca mulatta]
Length = 481
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 110/188 (58%), Gaps = 4/188 (2%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+
Sbjct: 35 GPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLT 93
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ A E + KLFVG L KQ E++V
Sbjct: 94 YCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQQGEEDV 150
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +E+ ++R S+GC FVK+ + A AAI L+G TM G L V+
Sbjct: 151 RRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMAGASSSLVVK 210
Query: 220 FADPKRPR 227
AD R R
Sbjct: 211 LADTDRER 218
>gi|311260847|ref|XP_003128555.1| PREDICTED: CUGBP, Elav-like family member 6 isoform 1 [Sus scrofa]
Length = 480
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 111/188 (59%), Gaps = 4/188 (2%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+
Sbjct: 35 GPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLT 93
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ A E + KLFVG L KQ E++V
Sbjct: 94 YCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQQGEEDV 150
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +E+ ++R S+GC FVK+ + A AAI +L+G TM G L V+
Sbjct: 151 RRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTMAGASSSLVVK 210
Query: 220 FADPKRPR 227
AD R R
Sbjct: 211 LADTDRER 218
>gi|329663834|ref|NP_001192573.1| CUGBP Elav-like family member 6 [Bos taurus]
gi|296483717|tpg|DAA25832.1| TPA: trinucleotide repeat containing 4 (predicted)-like [Bos
taurus]
Length = 480
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 111/188 (59%), Gaps = 4/188 (2%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+
Sbjct: 35 GPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLT 93
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ A E + KLFVG L KQ E++V
Sbjct: 94 YCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQQGEEDV 150
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +E+ ++R S+GC FVK+ + A AAI +L+G TM G L V+
Sbjct: 151 RRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTMAGASSSLVVK 210
Query: 220 FADPKRPR 227
AD R R
Sbjct: 211 LADTDRER 218
>gi|159032033|ref|NP_001103699.1| CUGBP Elav-like family member 2 isoform 2 [Mus musculus]
gi|74209492|dbj|BAE23295.1| unnamed protein product [Mus musculus]
Length = 524
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 47 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 100
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 101 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 158
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 159 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 218
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 219 VKFADTQKDK 228
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 53 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 112
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 113 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 144
Score = 39.3 bits (90), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 439 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 498
Query: 112 ALH 114
A++
Sbjct: 499 AMN 501
>gi|383415259|gb|AFH30843.1| CUGBP Elav-like family member 2 isoform 4 [Macaca mulatta]
Length = 488
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 11 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 64
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 65 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 122
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 123 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 182
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 183 VKFADTQKDK 192
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 77 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 108
Score = 39.3 bits (90), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 403 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 462
Query: 112 ALH 114
A++
Sbjct: 463 AMN 465
>gi|148694026|gb|EDL25973.1| bruno-like 6, RNA binding protein (Drosophila), isoform CRA_b [Mus
musculus]
Length = 459
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 110/188 (58%), Gaps = 4/188 (2%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+
Sbjct: 35 GPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLT 93
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ A E + KLFVG L KQ E++V
Sbjct: 94 YCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQQGEEDV 150
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +E+ ++R S+GC FVK+ + A AAI L+G TM G L V+
Sbjct: 151 RRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMTGASSSLVVK 210
Query: 220 FADPKRPR 227
AD R R
Sbjct: 211 LADTDRER 218
>gi|159032037|ref|NP_001103701.1| CUGBP Elav-like family member 2 isoform 4 [Mus musculus]
gi|3452501|emb|CAA09102.1| ETR-R3a protein [Rattus norvegicus]
gi|74144402|dbj|BAE36053.1| unnamed protein product [Mus musculus]
Length = 490
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 11 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 64
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 65 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 122
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 123 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 182
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 183 VKFADTQKDK 192
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 77 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 108
Score = 39.3 bits (90), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 405 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 464
Query: 112 ALH 114
A++
Sbjct: 465 AMN 467
>gi|68303645|ref|NP_001020247.1| CUGBP Elav-like family member 2 isoform 1 [Homo sapiens]
gi|332833597|ref|XP_003312503.1| PREDICTED: CUGBP, Elav-like family member 2 isoform 3 [Pan
troglodytes]
gi|397515224|ref|XP_003827856.1| PREDICTED: CUGBP Elav-like family member 2 isoform 2 [Pan paniscus]
gi|403278087|ref|XP_003930660.1| PREDICTED: CUGBP Elav-like family member 2 isoform 3 [Saimiri
boliviensis boliviensis]
gi|4104559|gb|AAD02074.1| neuroblastoma apoptosis-related RNA binding protein [Homo sapiens]
gi|15217394|gb|AAK92699.1| neuroplastoma apoptosis-related RNA-binding protein 1 [Homo
sapiens]
gi|119606754|gb|EAW86348.1| CUG triplet repeat, RNA binding protein 2, isoform CRA_c [Homo
sapiens]
Length = 490
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 11 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 64
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 65 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 122
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 123 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 182
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 183 VKFADTQKDK 192
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 77 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 108
Score = 39.3 bits (90), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 405 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 464
Query: 112 ALH 114
A++
Sbjct: 465 AMN 467
>gi|296213628|ref|XP_002753353.1| PREDICTED: CUGBP Elav-like family member 6 isoform 1 [Callithrix
jacchus]
Length = 481
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 110/188 (58%), Gaps = 4/188 (2%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+
Sbjct: 35 GPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGCIYELTVLKDRLTGLHKGCAFLT 93
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ A E + KLFVG L KQ E++V
Sbjct: 94 YCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQQDEEDV 150
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +E+ ++R S+GC FVK+ + A AAI L+G TM G L V+
Sbjct: 151 RRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMAGASSSLVVK 210
Query: 220 FADPKRPR 227
AD R R
Sbjct: 211 LADTDRER 218
>gi|351708216|gb|EHB11135.1| CUG-BP- and ETR-3-like factor 1 [Heterocephalus glaber]
Length = 513
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 113/178 (63%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
ALHN LPG PIQ++ AD E+ + + KLF+G ++K+ TE ++ +FS +G++E
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNNVE--DRKLFIGMISKKCTENDIRVMFSSFGQIE 161
Query: 171 DVYLMRDELKQSR-GCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++R SR GC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 162 ECRILRGPDGLSRGGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 219
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ D +
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNNVEDRK 135
>gi|332236062|ref|XP_003267224.1| PREDICTED: CUGBP Elav-like family member 6 isoform 1 [Nomascus
leucogenys]
Length = 481
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 110/188 (58%), Gaps = 4/188 (2%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+
Sbjct: 35 GPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLT 93
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ A E + KLFVG L KQ E++V
Sbjct: 94 YCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQQGEEDV 150
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +E+ ++R S+GC FVK+ + A AAI L+G TM G L V+
Sbjct: 151 RRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMAGASSSLVVK 210
Query: 220 FADPKRPR 227
AD R R
Sbjct: 211 LADTDRER 218
>gi|197100912|ref|NP_001126925.1| CUGBP Elav-like family member 2 isoform 2 [Pongo abelii]
gi|55733179|emb|CAH93273.1| hypothetical protein [Pongo abelii]
Length = 484
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 11 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 64
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 65 SFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 122
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 123 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 182
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 183 VKFADTQKDK 192
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVSFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 77 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 108
Score = 39.3 bits (90), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 399 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 458
Query: 112 ALH 114
A++
Sbjct: 459 AMN 461
>gi|410963193|ref|XP_003988150.1| PREDICTED: CUGBP Elav-like family member 2 isoform 2 [Felis catus]
Length = 496
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 19 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 72
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 73 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 130
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 131 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 190
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 191 VKFADTQKDK 200
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 25 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 84
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 85 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 116
Score = 39.3 bits (90), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 411 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 470
Query: 112 ALH 114
A++
Sbjct: 471 AMN 473
>gi|351699026|gb|EHB01945.1| CUG-BP- and ETR-3-like factor 1 [Heterocephalus glaber]
Length = 483
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/178 (40%), Positives = 113/178 (63%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCC + + T + A A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCSVTFYTRKAALEAQ 76
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++++ TE ++ +FS +G++
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISEKCTENDIRVMFSSFGQI 134
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 135 EEYRILRGPDGLSRGCAFVTFTTRGMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 192
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC V + R AL A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCSVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 108
>gi|157818811|ref|NP_001100297.1| CUGBP Elav-like family member 6 [Rattus norvegicus]
gi|149041860|gb|EDL95701.1| bruno-like 6, RNA binding protein (Drosophila) (predicted) [Rattus
norvegicus]
Length = 459
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 110/188 (58%), Gaps = 4/188 (2%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+
Sbjct: 35 GPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLT 93
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ A E + KLFVG L KQ E++V
Sbjct: 94 YCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQQGEEDV 150
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +E+ ++R S+GC FVK+ + A AAI L+G TM G L V+
Sbjct: 151 RRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMTGASSSLVVK 210
Query: 220 FADPKRPR 227
AD R R
Sbjct: 211 LADTDRER 218
>gi|402879613|ref|XP_003903426.1| PREDICTED: CUGBP Elav-like family member 2 isoform 2 [Papio anubis]
gi|426363973|ref|XP_004049101.1| PREDICTED: CUGBP Elav-like family member 2 isoform 1 [Gorilla
gorilla gorilla]
gi|14701777|gb|AAK72223.1| neuroplastoma apoptosis-related RNA-binding protein 3 [Homo
sapiens]
gi|194390100|dbj|BAG61812.1| unnamed protein product [Homo sapiens]
Length = 484
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 11 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 64
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 65 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 122
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 123 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 182
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 183 VKFADTQKDK 192
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 77 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 108
Score = 39.3 bits (90), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 399 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 458
Query: 112 ALH 114
A++
Sbjct: 459 AMN 461
>gi|393911007|gb|EJD76121.1| hypothetical protein, variant [Loa loa]
Length = 480
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 113/194 (58%), Gaps = 10/194 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
P PD + K+FVG +P++ E + R LFE+ G+V ++ +++DK T +GCCF+ Y
Sbjct: 17 PDPDAI------KMFVGQIPRSWGEAECRELFEQFGSVCQLNVLRDKVTQASRGCCFVTY 70
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVE 160
+A A ALHN LP P+Q++ AD E E KLFVG LNK+ TE V
Sbjct: 71 YKRADAIAAQAALHNIRVLPQMYHPVQMKPADIENRN----ERKLFVGMLNKKLTEDSVR 126
Query: 161 EIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220
E+F+ +G +ED +++D +SRGC FV ++HR A AI ++ TM GC +P+ V+F
Sbjct: 127 EMFAQFGHIEDCTVLKDSEGKSRGCAFVTFAHRSCAQQAIRQVHLSQTMEGCSKPIVVKF 186
Query: 221 ADPKRPRPGDSRSG 234
AD ++ + G
Sbjct: 187 ADTQKEKDAKKSGG 200
>gi|159032039|ref|NP_001103702.1| CUGBP Elav-like family member 2 isoform 5 [Mus musculus]
gi|4249672|gb|AAD13763.1| apoptosis-related RNA binding protein [Mus musculus]
gi|120538103|gb|AAI29097.1| Cugbp2 protein [Rattus norvegicus]
Length = 484
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 11 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 64
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 65 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 122
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 123 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 182
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 183 VKFADTQKDK 192
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 77 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 108
Score = 39.3 bits (90), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 399 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 458
Query: 112 ALH 114
A++
Sbjct: 459 AMN 461
>gi|81911882|sp|Q792H5.1|CELF2_RAT RecName: Full=CUGBP Elav-like family member 2; Short=CELF-2;
AltName: Full=Bruno-like protein 3; AltName: Full=CUG
triplet repeat RNA-binding protein 2; Short=CUG-BP2;
AltName: Full=CUG-BP- and ETR-3-like factor 2; AltName:
Full=ELAV-type RNA-binding protein 3; Short=ETR-3;
Short=Protein ETR-R3; AltName: Full=Neuroblastoma
apoptosis-related RNA-binding protein; Short=rNapor;
AltName: Full=RNA-binding protein BRUNOL-3
gi|81917931|sp|Q9Z0H4.1|CELF2_MOUSE RecName: Full=CUGBP Elav-like family member 2; Short=CELF-2;
AltName: Full=Bruno-like protein 3; AltName: Full=CUG
triplet repeat RNA-binding protein 2; Short=CUG-BP2;
AltName: Full=CUG-BP- and ETR-3-like factor 2; AltName:
Full=ELAV-type RNA-binding protein 3; Short=ETR-3;
Short=mETR-3; AltName: Full=Neuroblastoma
apoptosis-related RNA-binding protein; Short=mNapor;
AltName: Full=RNA-binding protein BRUNOL-3
gi|4249670|gb|AAD13762.1| apoptosis-related RNA binding protein [Rattus norvegicus]
gi|4249674|gb|AAD13764.1| apoptosis-related RNA binding protein [Mus musculus]
gi|20073073|gb|AAH26856.1| Cugbp2 protein [Mus musculus]
Length = 508
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 35 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 88
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 89 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 146
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 147 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 206
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 207 VKFADTQKDK 216
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 41 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 100
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 101 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 132
Score = 39.3 bits (90), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 423 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 482
Query: 112 ALH 114
A++
Sbjct: 483 AMN 485
>gi|410963195|ref|XP_003988151.1| PREDICTED: CUGBP Elav-like family member 2 isoform 3 [Felis catus]
Length = 484
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 11 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 64
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 65 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 122
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 123 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 182
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 183 VKFADTQKDK 192
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 77 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 108
Score = 39.3 bits (90), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 399 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 458
Query: 112 ALH 114
A++
Sbjct: 459 AMN 461
>gi|73949074|ref|XP_849139.1| PREDICTED: CUGBP, Elav-like family member 2 isoform 2 [Canis lupus
familiaris]
gi|338721615|ref|XP_003364409.1| PREDICTED: CUGBP, Elav-like family member 2 isoform 3 [Equus
caballus]
Length = 484
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 11 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 64
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 65 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 122
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 123 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 182
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 183 VKFADTQKDK 192
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 77 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 108
Score = 39.3 bits (90), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 399 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 458
Query: 112 ALH 114
A++
Sbjct: 459 AMN 461
>gi|74198996|dbj|BAE30715.1| unnamed protein product [Mus musculus]
Length = 488
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 11 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 64
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 65 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 122
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 123 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 182
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 183 VKFADTQKDK 192
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 77 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 108
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+G+ A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A
Sbjct: 398 EGTEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSA 457
Query: 107 DRAIRALH 114
AI+A++
Sbjct: 458 QAAIQAMN 465
>gi|395539009|ref|XP_003771466.1| PREDICTED: CUGBP Elav-like family member 2 isoform 2 [Sarcophilus
harrisii]
Length = 478
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 53 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 106
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 107 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 164
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 165 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 224
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 225 VKFADTQKDK 234
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 59 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 118
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 119 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 150
>gi|410963191|ref|XP_003988149.1| PREDICTED: CUGBP Elav-like family member 2 isoform 1 [Felis catus]
Length = 514
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 35 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 88
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 89 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 146
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 147 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 206
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 207 VKFADTQKDK 216
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 41 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 100
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 101 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 132
Score = 39.3 bits (90), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 429 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 488
Query: 112 ALH 114
A++
Sbjct: 489 AMN 491
>gi|332833593|ref|XP_003312501.1| PREDICTED: CUGBP, Elav-like family member 2 isoform 1 [Pan
troglodytes]
gi|397515222|ref|XP_003827855.1| PREDICTED: CUGBP Elav-like family member 2 isoform 1 [Pan paniscus]
gi|403278083|ref|XP_003930658.1| PREDICTED: CUGBP Elav-like family member 2 isoform 1 [Saimiri
boliviensis boliviensis]
gi|380808894|gb|AFE76322.1| CUGBP Elav-like family member 2 isoform 3 [Macaca mulatta]
Length = 514
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 35 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 88
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 89 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 146
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 147 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 206
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 207 VKFADTQKDK 216
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 41 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 100
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 101 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 132
Score = 39.3 bits (90), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 429 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 488
Query: 112 ALH 114
A++
Sbjct: 489 AMN 491
>gi|68303647|ref|NP_001020248.1| CUGBP Elav-like family member 2 isoform 3 [Homo sapiens]
gi|402879611|ref|XP_003903425.1| PREDICTED: CUGBP Elav-like family member 2 isoform 1 [Papio anubis]
gi|426363975|ref|XP_004049102.1| PREDICTED: CUGBP Elav-like family member 2 isoform 2 [Gorilla
gorilla gorilla]
gi|74754421|sp|O95319.1|CELF2_HUMAN RecName: Full=CUGBP Elav-like family member 2; Short=CELF-2;
AltName: Full=Bruno-like protein 3; AltName: Full=CUG
triplet repeat RNA-binding protein 2; Short=CUG-BP2;
AltName: Full=CUG-BP- and ETR-3-like factor 2; AltName:
Full=ELAV-type RNA-binding protein 3; Short=ETR-3;
AltName: Full=Neuroblastoma apoptosis-related
RNA-binding protein; Short=hNAPOR; AltName:
Full=RNA-binding protein BRUNOL-3
gi|152013391|sp|Q5R8Y8.2|CELF2_PONAB RecName: Full=CUGBP Elav-like family member 2; Short=CELF-2;
AltName: Full=Bruno-like protein 3; AltName: Full=CUG
triplet repeat RNA-binding protein 2; Short=CUG-BP2;
AltName: Full=CUG-BP- and ETR-3-like factor 2; AltName:
Full=RNA-binding protein BRUNOL-3
gi|4249666|gb|AAD13760.1| apoptosis-related RNA binding protein [Homo sapiens]
gi|119606756|gb|EAW86350.1| CUG triplet repeat, RNA binding protein 2, isoform CRA_e [Homo
sapiens]
gi|380808896|gb|AFE76323.1| CUGBP Elav-like family member 2 isoform 3 [Macaca mulatta]
gi|380808898|gb|AFE76324.1| CUGBP Elav-like family member 2 isoform 3 [Macaca mulatta]
gi|410349367|gb|JAA41287.1| CUGBP, Elav-like family member 2 [Pan troglodytes]
Length = 508
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 35 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 88
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 89 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 146
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 147 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 206
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 207 VKFADTQKDK 216
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 41 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 100
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 101 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 132
Score = 39.3 bits (90), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 423 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 482
Query: 112 ALH 114
A++
Sbjct: 483 AMN 485
>gi|338721613|ref|XP_003364408.1| PREDICTED: CUGBP, Elav-like family member 2 isoform 2 [Equus
caballus]
gi|345793484|ref|XP_857942.2| PREDICTED: CUGBP, Elav-like family member 2 isoform 3 [Canis lupus
familiaris]
Length = 514
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 35 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 88
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 89 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 146
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 147 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 206
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 207 VKFADTQKDK 216
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 41 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 100
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 101 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 132
Score = 39.3 bits (90), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 429 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 488
Query: 112 ALH 114
A++
Sbjct: 489 AMN 491
>gi|410920283|ref|XP_003973613.1| PREDICTED: CUGBP Elav-like family member 4-like [Takifugu rubripes]
Length = 530
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/181 (43%), Positives = 107/181 (59%), Gaps = 9/181 (4%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D+RPLFEE G + E+ ++KD+ TG +GC F+ Y E A +A A
Sbjct: 52 KLFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESALKAQNA 111
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG LNKQ +E +V +F +G +E+
Sbjct: 112 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLNKQQSEDDVRRLFESFGCIEEC 168
Query: 173 YLMRDELKQSRG------CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
++R S+G C VK+S A AAI+AL+G TM G L V+FAD +
Sbjct: 169 TILRGPDGNSKGELGAASCSIVKFSSHAEAQAAISALHGSQTMPGASSSLVVKFADTDKE 228
Query: 227 R 227
R
Sbjct: 229 R 229
>gi|344239315|gb|EGV95418.1| CUG-BP- and ETR-3-like factor 2 [Cricetulus griseus]
Length = 508
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 35 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 88
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 89 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 146
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 147 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 206
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 207 VKFADTQKDK 216
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 41 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 100
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 101 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 132
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+G A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A
Sbjct: 418 EGPEMANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSA 477
Query: 107 DRAIRALH 114
AI+A++
Sbjct: 478 QAAIQAMN 485
>gi|338717391|ref|XP_003363632.1| PREDICTED: LOW QUALITY PROTEIN: CUGBP Elav-like family member
6-like [Equus caballus]
Length = 540
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 111/188 (59%), Gaps = 4/188 (2%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+
Sbjct: 139 GPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLT 197
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ A E + KLFVG L KQ E++V
Sbjct: 198 YCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQQGEEDV 254
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +E+ ++R S+GC FVK+ + A AAI +L+G TM G L ++
Sbjct: 255 RRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTMAGASSSLVIK 314
Query: 220 FADPKRPR 227
AD R R
Sbjct: 315 LADTDRER 322
>gi|194388952|dbj|BAG61493.1| unnamed protein product [Homo sapiens]
Length = 514
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 35 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 88
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 89 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 146
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 147 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 206
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 207 VKFADTQKDK 216
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 41 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 100
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 101 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 132
Score = 39.3 bits (90), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 429 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 488
Query: 112 ALH 114
A++
Sbjct: 489 AMN 491
>gi|449480621|ref|XP_002190740.2| PREDICTED: CUGBP Elav-like family member 2 [Taeniopygia guttata]
Length = 490
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 11 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 64
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 65 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 122
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 123 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 182
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 183 VKFADTQKDK 192
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 77 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 108
Score = 39.3 bits (90), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 405 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 464
Query: 112 ALH 114
A++
Sbjct: 465 AMN 467
>gi|194227176|ref|XP_001916706.1| PREDICTED: CUGBP, Elav-like family member 2 isoform 1 [Equus
caballus]
gi|344277695|ref|XP_003410635.1| PREDICTED: CUGBP Elav-like family member 2-like [Loxodonta
africana]
gi|345793487|ref|XP_003433765.1| PREDICTED: CUGBP, Elav-like family member 2 [Canis lupus
familiaris]
Length = 488
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 11 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 64
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 65 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 122
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 123 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 182
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 183 VKFADTQKDK 192
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 77 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 108
Score = 39.3 bits (90), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 403 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 462
Query: 112 ALH 114
A++
Sbjct: 463 AMN 465
>gi|82237387|sp|Q6P0B1.1|CELF2_DANRE RecName: Full=CUGBP Elav-like family member 2; Short=CELF-2;
AltName: Full=Bruno-like protein 3; AltName: Full=CUG
triplet repeat RNA-binding protein 2; Short=CUG-BP2;
AltName: Full=CUG-BP- and ETR-3-like factor 2; AltName:
Full=ELAV-type RNA-binding protein 3; Short=ETR-3;
AltName: Full=RNA-binding protein BRUNOL-3
gi|41351000|gb|AAH65686.1| Cugbp2 protein [Danio rerio]
Length = 514
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 117/190 (61%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 39 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFV 92
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TL G PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 93 TFYTRKAALEAQNALHNIKTLTGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 150
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSPYG++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 151 DIRVMFSPYGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPMV 210
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 211 VKFADTQKDK 220
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 45 KMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 104
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 105 NALHNIKTLTGMHHPIQMKPADSEKSNAVEDR 136
>gi|4249668|gb|AAD13761.1| apoptosis-related RNA binding protein [Homo sapiens]
Length = 509
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 30 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 83
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 84 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 141
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 142 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 201
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 202 VKFADTQKDK 211
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 36 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 95
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 96 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 127
>gi|34328409|ref|NP_780444.2| CUGBP Elav-like family member 6 [Mus musculus]
gi|81912009|sp|Q7TN33.1|CELF6_MOUSE RecName: Full=CUGBP Elav-like family member 6; Short=CELF-6;
AltName: Full=Bruno-like protein 6; AltName:
Full=CUG-BP- and ETR-3-like factor 6; AltName:
Full=RNA-binding protein BRUNOL-6
gi|30851561|gb|AAH52406.1| Bruno-like 6, RNA binding protein (Drosophila) [Mus musculus]
Length = 460
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 110/188 (58%), Gaps = 4/188 (2%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+
Sbjct: 35 GPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLT 93
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ A E + KLFVG L KQ E++V
Sbjct: 94 YCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQQGEEDV 150
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +E+ ++R S+GC FVK+ + A AAI L+G TM G L V+
Sbjct: 151 RRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMTGASSSLVVK 210
Query: 220 FADPKRPR 227
AD R R
Sbjct: 211 LADTDRER 218
>gi|348575365|ref|XP_003473460.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 3 [Cavia
porcellus]
Length = 532
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 53 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 106
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 107 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 164
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 165 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 224
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 225 VKFADTQKDK 234
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 59 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 118
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 119 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 150
Score = 38.9 bits (89), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 447 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 506
Query: 112 ALH 114
A++
Sbjct: 507 AMN 509
>gi|197099692|ref|NP_001125976.1| CUGBP Elav-like family member 1 [Pongo abelii]
gi|75070672|sp|Q5R995.1|CELF1_PONAB RecName: Full=CUGBP Elav-like family member 1; Short=CELF-1;
AltName: Full=Bruno-like protein 2; AltName: Full=CUG
triplet repeat RNA-binding protein 1; Short=CUG-BP1;
AltName: Full=CUG-BP- and ETR-3-like factor 1; AltName:
Full=RNA-binding protein BRUNOL-2
gi|55729876|emb|CAH91665.1| hypothetical protein [Pongo abelii]
Length = 513
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/178 (40%), Positives = 112/178 (62%), Gaps = 5/178 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++ +FS +G++
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDIRVMFSSFGQI 161
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
E+ ++ SRGC V ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 162 EECRILWGPDGLSRGCALVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 219
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 135
>gi|189054263|dbj|BAG36783.1| unnamed protein product [Homo sapiens]
Length = 509
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 30 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 83
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 84 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 141
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 142 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 201
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 202 VKFADTQKDK 211
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 36 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 95
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 96 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 127
Score = 39.3 bits (90), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 424 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 483
Query: 112 ALH 114
A++
Sbjct: 484 AMN 486
>gi|426233875|ref|XP_004010933.1| PREDICTED: LOW QUALITY PROTEIN: CUGBP Elav-like family member 6
[Ovis aries]
Length = 451
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 111/188 (59%), Gaps = 4/188 (2%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+
Sbjct: 7 GPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLT 65
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ A E + KLFVG L KQ E++V
Sbjct: 66 YCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQQGEEDV 122
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +E+ ++R S+GC FVK+ + A AAI +L+G TM G L V+
Sbjct: 123 RRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTMAGASSSLVVK 182
Query: 220 FADPKRPR 227
AD R R
Sbjct: 183 LADTDRER 190
>gi|14701786|gb|AAK72224.1| neuroplastoma apoptosis-related RNA-binding protein 2 [Homo
sapiens]
Length = 509
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 30 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 83
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 84 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 141
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 142 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 201
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 202 VKFADTQKDK 211
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 36 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 95
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 96 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 127
Score = 39.3 bits (90), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 424 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 483
Query: 112 ALH 114
A++
Sbjct: 484 AMN 486
>gi|440906742|gb|ELR56971.1| CUGBP Elav-like family member 3, partial [Bos grunniens mutus]
Length = 476
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 110/185 (59%), Gaps = 10/185 (5%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 9 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 68
Query: 113 LHNQHTLPGGVGPIQVRYADGERE--------RLGAVEYKLFVGSLNKQATEKEVEEIFS 164
LH Q TLPG PIQV+ AD E ++G + KLFVG L KQ T+++V ++F
Sbjct: 69 LHEQKTLPGMNRPIQVKPADSESRGGRFCTFGKVGMKDRKLFVGMLGKQQTDEDVRKMFE 128
Query: 165 PYGRVEDVYLMR--DELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
P+G +++ + + L S GC FVK+ A AAIN L+ T+ G L V+FAD
Sbjct: 129 PFGTIDEWWALTPSSSLLNSSGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFAD 188
Query: 223 PKRPR 227
++ R
Sbjct: 189 TEKER 193
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 393 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 452
Query: 204 NGI 206
NG
Sbjct: 453 NGF 455
>gi|354467972|ref|XP_003496441.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 3
[Cricetulus griseus]
Length = 532
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 53 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 106
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 107 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 164
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 165 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 224
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 225 VKFADTQKDK 234
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 59 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 118
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 119 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 150
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+G A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A
Sbjct: 442 EGPEMANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSA 501
Query: 107 DRAIRALH 114
AI+A++
Sbjct: 502 QAAIQAMN 509
>gi|119606755|gb|EAW86349.1| CUG triplet repeat, RNA binding protein 2, isoform CRA_d [Homo
sapiens]
Length = 509
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 30 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 83
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 84 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 141
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 142 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 201
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 202 VKFADTQKDK 211
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 36 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 95
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 96 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 127
Score = 39.3 bits (90), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 424 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 483
Query: 112 ALH 114
A++
Sbjct: 484 AMN 486
>gi|354473520|ref|XP_003498983.1| PREDICTED: CUGBP Elav-like family member 6-like [Cricetulus
griseus]
Length = 551
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 110/188 (58%), Gaps = 4/188 (2%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+
Sbjct: 105 GPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLT 163
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ A E + KLFVG L KQ E++V
Sbjct: 164 YCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQQGEEDV 220
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +E+ ++R S+GC FVK+ + A AAI L+G TM G L V+
Sbjct: 221 RRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMSGASSSLVVK 280
Query: 220 FADPKRPR 227
AD R R
Sbjct: 281 LADTDRER 288
>gi|281345849|gb|EFB21433.1| hypothetical protein PANDA_019092 [Ailuropoda melanoleuca]
Length = 512
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 17 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 70
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 71 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 128
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 129 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 188
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 189 VKFADTQKDK 198
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 23 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 82
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 83 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 114
Score = 38.9 bits (89), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 427 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 486
Query: 112 ALH 114
A++
Sbjct: 487 AMN 489
>gi|134152696|ref|NP_058893.2| CUGBP Elav-like family member 2 isoform 1 [Rattus norvegicus]
gi|3451291|emb|CAA09103.1| ETR-R3b protein [Rattus norvegicus]
Length = 532
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 53 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 106
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 107 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 164
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 165 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 224
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 225 VKFADTQKDK 234
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 59 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 118
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 119 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 150
Score = 38.9 bits (89), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 447 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 506
Query: 112 ALH 114
A++
Sbjct: 507 AMN 509
>gi|431893701|gb|ELK03522.1| CUG-BP- and ETR-3-like factor 6 [Pteropus alecto]
Length = 505
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 111/188 (59%), Gaps = 4/188 (2%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+
Sbjct: 7 GPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLT 65
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ A E + KLFVG L KQ E++V
Sbjct: 66 YCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQQGEEDV 122
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +E+ ++R S+GC FVK+ + A AAI +L+G TM G L V+
Sbjct: 123 RRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTMAGASSSLVVK 182
Query: 220 FADPKRPR 227
AD R R
Sbjct: 183 LADTDRER 190
>gi|148694025|gb|EDL25972.1| bruno-like 6, RNA binding protein (Drosophila), isoform CRA_a [Mus
musculus]
Length = 465
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 110/188 (58%), Gaps = 4/188 (2%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+
Sbjct: 40 GPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLT 98
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ A E + KLFVG L KQ E++V
Sbjct: 99 YCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQQGEEDV 155
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +E+ ++R S+GC FVK+ + A AAI L+G TM G L V+
Sbjct: 156 RRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMTGASSSLVVK 215
Query: 220 FADPKRPR 227
AD R R
Sbjct: 216 LADTDRER 223
>gi|380808892|gb|AFE76321.1| CUGBP Elav-like family member 2 isoform 2 [Macaca mulatta]
Length = 515
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 42 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 95
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 96 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 153
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 154 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 213
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 214 VKFADTQKDK 223
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 48 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 107
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 108 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 139
Score = 39.3 bits (90), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 430 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 489
Query: 112 ALH 114
A++
Sbjct: 490 AMN 492
>gi|159032031|ref|NP_001103698.1| CUGBP Elav-like family member 2 isoform 1 [Mus musculus]
gi|237757271|ref|NP_001153765.1| CUGBP Elav-like family member 2 isoform 1 [Mus musculus]
gi|285026421|ref|NP_001077055.2| CUGBP Elav-like family member 2 isoform 2 [Rattus norvegicus]
gi|148676041|gb|EDL07988.1| CUG triplet repeat, RNA binding protein 2 [Mus musculus]
gi|149021034|gb|EDL78641.1| CUG triplet repeat, RNA binding protein 2, isoform CRA_a [Rattus
norvegicus]
gi|149021035|gb|EDL78642.1| CUG triplet repeat, RNA binding protein 2, isoform CRA_a [Rattus
norvegicus]
Length = 526
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 53 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 106
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 107 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 164
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 165 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 224
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 225 VKFADTQKDK 234
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 59 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 118
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 119 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 150
Score = 38.9 bits (89), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 441 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 500
Query: 112 ALH 114
A++
Sbjct: 501 AMN 503
>gi|22137759|gb|AAH36391.1| CUGBP2 protein [Homo sapiens]
gi|119606753|gb|EAW86347.1| CUG triplet repeat, RNA binding protein 2, isoform CRA_b [Homo
sapiens]
Length = 521
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 30 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 83
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 84 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 141
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 142 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 201
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 202 VKFADTQKDK 211
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 36 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 95
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 96 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 127
Score = 39.3 bits (90), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 436 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 495
Query: 112 ALH 114
A++
Sbjct: 496 AMN 498
>gi|327272094|ref|XP_003220821.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 2 [Anolis
carolinensis]
Length = 488
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 11 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 64
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 65 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 122
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 123 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 182
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 183 VKFADTQKDK 192
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 77 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 108
Score = 39.3 bits (90), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 403 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 462
Query: 112 ALH 114
A++
Sbjct: 463 AMN 465
>gi|402879615|ref|XP_003903427.1| PREDICTED: CUGBP Elav-like family member 2 isoform 3 [Papio anubis]
Length = 521
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 42 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 95
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 96 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 153
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 154 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 213
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 214 VKFADTQKDK 223
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 48 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 107
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 108 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 139
Score = 39.3 bits (90), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 436 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 495
Query: 112 ALH 114
A++
Sbjct: 496 AMN 498
>gi|395822449|ref|XP_003784530.1| PREDICTED: CUGBP Elav-like family member 6 isoform 1 [Otolemur
garnettii]
Length = 481
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 110/188 (58%), Gaps = 4/188 (2%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+
Sbjct: 35 GPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLT 93
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ A E + KLFVG L KQ E++V
Sbjct: 94 YCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQQGEEDV 150
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +E+ ++R S+GC FVK+ + A AAI L+G TM G L V+
Sbjct: 151 RRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMAGASSSLVVK 210
Query: 220 FADPKRPR 227
AD R R
Sbjct: 211 LADTDRER 218
>gi|348575361|ref|XP_003473458.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 1 [Cavia
porcellus]
Length = 526
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 53 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 106
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 107 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 164
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 165 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 224
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 225 VKFADTQKDK 234
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 59 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 118
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 119 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 150
Score = 38.9 bits (89), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 441 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 500
Query: 112 ALH 114
A++
Sbjct: 501 AMN 503
>gi|402879617|ref|XP_003903428.1| PREDICTED: CUGBP Elav-like family member 2 isoform 4 [Papio anubis]
Length = 533
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 42 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 95
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 96 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 153
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 154 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 213
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 214 VKFADTQKDK 223
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 48 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 107
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 108 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 139
Score = 39.3 bits (90), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 448 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 507
Query: 112 ALH 114
A++
Sbjct: 508 AMN 510
>gi|35903017|ref|NP_919382.1| CUGBP Elav-like family member 2 [Danio rerio]
gi|19909954|dbj|BAB87828.1| elav-type ribonucleoprotein-3 [Danio rerio]
Length = 486
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 117/190 (61%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 11 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFV 64
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TL G PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 65 TFYTRKAALEAQNALHNIKTLTGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 122
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSPYG++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 123 DIRVMFSPYGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPMV 182
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 183 VKFADTQKDK 192
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 77 NALHNIKTLTGMHHPIQMKPADSEKSNAVEDR 108
>gi|410225362|gb|JAA09900.1| CUGBP, Elav-like family member 2 [Pan troglodytes]
gi|410263776|gb|JAA19854.1| CUGBP, Elav-like family member 2 [Pan troglodytes]
gi|410305934|gb|JAA31567.1| CUGBP, Elav-like family member 2 [Pan troglodytes]
gi|410305938|gb|JAA31569.1| CUGBP, Elav-like family member 2 [Pan troglodytes]
gi|410349361|gb|JAA41284.1| CUGBP, Elav-like family member 2 [Pan troglodytes]
gi|410349363|gb|JAA41285.1| CUGBP, Elav-like family member 2 [Pan troglodytes]
Length = 515
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 42 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 95
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 96 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 153
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 154 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 213
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 214 VKFADTQKDK 223
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 48 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 107
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 108 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 139
Score = 39.3 bits (90), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 430 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 489
Query: 112 ALH 114
A++
Sbjct: 490 AMN 492
>gi|332833599|ref|XP_507653.3| PREDICTED: CUGBP, Elav-like family member 2 isoform 4 [Pan
troglodytes]
gi|410349369|gb|JAA41288.1| CUGBP, Elav-like family member 2 [Pan troglodytes]
Length = 521
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 42 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 95
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 96 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 153
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 154 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 213
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 214 VKFADTQKDK 223
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 48 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 107
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 108 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 139
Score = 39.3 bits (90), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 436 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 495
Query: 112 ALH 114
A++
Sbjct: 496 AMN 498
>gi|134152680|ref|NP_006552.3| CUGBP Elav-like family member 2 isoform 2 [Homo sapiens]
gi|348575363|ref|XP_003473459.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 2 [Cavia
porcellus]
Length = 521
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 42 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 95
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 96 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 153
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 154 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 213
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 214 VKFADTQKDK 223
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 48 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 107
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 108 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 139
Score = 39.3 bits (90), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 436 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 495
Query: 112 ALH 114
A++
Sbjct: 496 AMN 498
>gi|156717754|ref|NP_001096417.1| CUGBP Elav-like family member 2 [Xenopus (Silurana) tropicalis]
gi|152013392|sp|A4IIM2.1|CELF2_XENTR RecName: Full=CUGBP Elav-like family member 2; Short=CELF-2;
AltName: Full=Bruno-like protein 3; AltName: Full=CUG
triplet repeat RNA-binding protein 2; Short=CUG-BP2;
AltName: Full=CUG-BP- and ETR-3-like factor 2; AltName:
Full=ELAV-type RNA-binding protein 3; Short=ETR-3;
AltName: Full=RNA-binding protein BRUNOL-3
gi|134024252|gb|AAI36077.1| LOC100125022 protein [Xenopus (Silurana) tropicalis]
Length = 513
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 30 PDPDAI------KMFVGQIPRSWSEKELKDLFEPYGAVYQINVLRDRSQNPPQSKGCCFV 83
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 84 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 141
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 142 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 201
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 202 VKFADTQKDK 211
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++++F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 36 KMFVGQIPRSWSEKELKDLFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 95
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 96 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 127
Score = 38.9 bits (89), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 428 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 487
Query: 112 ALH 114
A++
Sbjct: 488 AMN 490
>gi|291401988|ref|XP_002717491.1| PREDICTED: CUG triplet repeat, RNA binding protein 2-like
[Oryctolagus cuniculus]
Length = 532
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 53 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 106
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 107 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 164
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 165 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 224
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 225 VKFADTQKDK 234
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 59 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 118
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 119 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 150
Score = 38.9 bits (89), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 447 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 506
Query: 112 ALH 114
A++
Sbjct: 507 AMN 509
>gi|395539007|ref|XP_003771465.1| PREDICTED: CUGBP Elav-like family member 2 isoform 1 [Sarcophilus
harrisii]
Length = 526
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 53 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 106
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 107 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 164
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 165 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 224
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 225 VKFADTQKDK 234
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 59 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 118
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 119 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 150
Score = 38.9 bits (89), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 441 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 500
Query: 112 ALH 114
A++
Sbjct: 501 AMN 503
>gi|354467970|ref|XP_003496440.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 2
[Cricetulus griseus]
Length = 526
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 53 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 106
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 107 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 164
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 165 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 224
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 225 VKFADTQKDK 234
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 59 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 118
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 119 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 150
Score = 40.0 bits (92), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+G A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A
Sbjct: 436 EGPEMANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSA 495
Query: 107 DRAIRALH 114
AI+A++
Sbjct: 496 QAAIQAMN 503
>gi|440904320|gb|ELR54847.1| CUGBP Elav-like family member 2, partial [Bos grunniens mutus]
Length = 519
Score = 150 bits (379), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 17 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 70
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 71 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 128
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 129 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 188
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 189 VKFADTQKDK 198
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 23 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 82
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 83 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 114
Score = 39.3 bits (90), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 434 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 493
Query: 112 ALH 114
A++
Sbjct: 494 AMN 496
>gi|410225364|gb|JAA09901.1| CUGBP, Elav-like family member 2 [Pan troglodytes]
gi|410263770|gb|JAA19851.1| CUGBP, Elav-like family member 2 [Pan troglodytes]
gi|410263772|gb|JAA19852.1| CUGBP, Elav-like family member 2 [Pan troglodytes]
gi|410305936|gb|JAA31568.1| CUGBP, Elav-like family member 2 [Pan troglodytes]
gi|410349365|gb|JAA41286.1| CUGBP, Elav-like family member 2 [Pan troglodytes]
Length = 519
Score = 150 bits (379), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 42 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 95
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 96 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 153
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 154 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 213
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 214 VKFADTQKDK 223
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 48 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 107
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 108 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 139
Score = 39.3 bits (90), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 434 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 493
Query: 112 ALH 114
A++
Sbjct: 494 AMN 496
>gi|301768673|ref|XP_002919757.1| PREDICTED: CUGBP Elav-like family member 6-like, partial
[Ailuropoda melanoleuca]
Length = 473
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 111/188 (59%), Gaps = 4/188 (2%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+
Sbjct: 27 GPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLT 85
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ A E + KLFVG L KQ E++V
Sbjct: 86 YCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQQGEEDV 142
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +E+ ++R S+GC FVK+ + A AAI +L+G TM G L V+
Sbjct: 143 RRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTMAGASSSLVVK 202
Query: 220 FADPKRPR 227
AD R R
Sbjct: 203 LADTDRER 210
>gi|281340436|gb|EFB16020.1| hypothetical protein PANDA_008409 [Ailuropoda melanoleuca]
Length = 470
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 111/188 (59%), Gaps = 4/188 (2%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+
Sbjct: 24 GPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLT 82
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ A E + KLFVG L KQ E++V
Sbjct: 83 YCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQQGEEDV 139
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +E+ ++R S+GC FVK+ + A AAI +L+G TM G L V+
Sbjct: 140 RRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTMAGASSSLVVK 199
Query: 220 FADPKRPR 227
AD R R
Sbjct: 200 LADTDRER 207
>gi|289547741|ref|NP_001166155.1| CUGBP Elav-like family member 6 isoform 2 [Homo sapiens]
gi|194381648|dbj|BAG58778.1| unnamed protein product [Homo sapiens]
Length = 454
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 110/188 (58%), Gaps = 4/188 (2%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+
Sbjct: 35 GPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLT 93
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ A E + KLFVG L KQ E++V
Sbjct: 94 YCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQQGEEDV 150
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +E+ ++R S+GC FVK+ + A AAI L+G TM G L V+
Sbjct: 151 RRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIRGLHGSRTMAGASSSLVVK 210
Query: 220 FADPKRPR 227
AD R R
Sbjct: 211 LADTDRER 218
Score = 38.9 bits (89), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 120 PGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE- 178
PG P+Q YA G G LF+ L ++ + E+ + F P+G V + D
Sbjct: 347 PGVADPLQQAYA-GMHHYAGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRA 405
Query: 179 LKQSRGCGFVKYSHRDMALAAINALNGI 206
QS+ GFV + + A AI A+NG
Sbjct: 406 TNQSKCFGFVSFDNPTSAQTAIQAMNGF 433
>gi|402874765|ref|XP_003901198.1| PREDICTED: CUGBP Elav-like family member 6 isoform 2 [Papio anubis]
Length = 454
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 110/188 (58%), Gaps = 4/188 (2%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+
Sbjct: 35 GPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLT 93
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ A E + KLFVG L KQ E++V
Sbjct: 94 YCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQQGEEDV 150
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +E+ ++R S+GC FVK+ + A AAI L+G TM G L V+
Sbjct: 151 RRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMAGASSSLVVK 210
Query: 220 FADPKRPR 227
AD R R
Sbjct: 211 LADTDRER 218
Score = 39.3 bits (90), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 120 PGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE- 178
PG P+Q YA G G LF+ L ++ + E+ + F P+G V + D
Sbjct: 347 PGVADPLQQAYA-GMHHYAGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRA 405
Query: 179 LKQSRGCGFVKYSHRDMALAAINALNGI 206
QS+ GFV + + A AI A+NG
Sbjct: 406 TNQSKCFGFVSFDNPTSAQTAIQAMNGF 433
>gi|148225362|ref|NP_001079593.1| CUGBP Elav-like family member 2 [Xenopus laevis]
gi|82241541|sp|Q7ZXE2.1|CELF2_XENLA RecName: Full=CUGBP Elav-like family member 2; Short=CELF-2;
AltName: Full=Bruno-like protein 3; AltName: Full=CUG
triplet repeat RNA-binding protein 2; Short=CUG-BP2;
AltName: Full=CUG-BP- and ETR-3-like factor 2; AltName:
Full=ELAV-type RNA-binding protein 3; Short=ETR-3;
AltName: Full=RNA-binding protein BRUNOL-3
gi|27924438|gb|AAH45035.1| Cugbp2-A-prov protein [Xenopus laevis]
Length = 536
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 53 PDPDAI------KMFVGQIPRSWSEKELKDLFEPYGAVYQINVLRDRSQNPPQSKGCCFV 106
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 107 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 164
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 165 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 224
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 225 VKFADTQKDK 234
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 69/119 (57%), Gaps = 13/119 (10%)
Query: 127 QVRYADGERERL-GAVEY---------KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMR 176
++ +++G ++ GA+++ K+FVG + + +EKE++++F PYG V + ++R
Sbjct: 32 ELLFSNGTTNKMNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKDLFEPYGAVYQINVLR 91
Query: 177 DELK---QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
D + QS+GC FV + R AL A NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 92 DRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 150
Score = 38.9 bits (89), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 451 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 510
Query: 112 ALH 114
A++
Sbjct: 511 AMN 513
>gi|395539011|ref|XP_003771467.1| PREDICTED: CUGBP Elav-like family member 2 isoform 3 [Sarcophilus
harrisii]
Length = 536
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 53 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 106
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 107 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 164
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 165 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 224
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 225 VKFADTQKDK 234
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 59 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 118
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 119 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 150
>gi|327272092|ref|XP_003220820.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 1 [Anolis
carolinensis]
Length = 536
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 53 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 106
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 107 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 164
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 165 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 224
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 225 VKFADTQKDK 234
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 59 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 118
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 119 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 150
>gi|390468527|ref|XP_003733960.1| PREDICTED: CUGBP Elav-like family member 6 isoform 2 [Callithrix
jacchus]
Length = 454
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 110/188 (58%), Gaps = 4/188 (2%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+
Sbjct: 35 GPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGCIYELTVLKDRLTGLHKGCAFLT 93
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ A E + KLFVG L KQ E++V
Sbjct: 94 YCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQQDEEDV 150
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +E+ ++R S+GC FVK+ + A AAI L+G TM G L V+
Sbjct: 151 RRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMAGASSSLVVK 210
Query: 220 FADPKRPR 227
AD R R
Sbjct: 211 LADTDRER 218
Score = 39.3 bits (90), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 120 PGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE- 178
PG P+Q YA G G LF+ L ++ + E+ + F P+G V + D
Sbjct: 347 PGVADPLQQAYA-GMHHYAGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRA 405
Query: 179 LKQSRGCGFVKYSHRDMALAAINALNGI 206
QS+ GFV + + A AI A+NG
Sbjct: 406 TNQSKCFGFVSFDNPTSAQTAIQAMNGF 433
>gi|426379619|ref|XP_004056489.1| PREDICTED: CUGBP Elav-like family member 6 isoform 2 [Gorilla
gorilla gorilla]
Length = 454
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 110/188 (58%), Gaps = 4/188 (2%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+
Sbjct: 35 GPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLT 93
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ A E + KLFVG L KQ E++V
Sbjct: 94 YCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQQGEEDV 150
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +E+ ++R S+GC FVK+ + A AAI L+G TM G L V+
Sbjct: 151 RRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMAGASSSLVVK 210
Query: 220 FADPKRPR 227
AD R R
Sbjct: 211 LADTDRER 218
Score = 39.3 bits (90), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 120 PGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE- 178
PG P+Q YA G G LF+ L ++ + E+ + F P+G V + D
Sbjct: 347 PGVADPLQQAYA-GMHHYAGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRA 405
Query: 179 LKQSRGCGFVKYSHRDMALAAINALNGI 206
QS+ GFV + + A AI A+NG
Sbjct: 406 TNQSKCFGFVSFDNPTSAQTAIQAMNGF 433
>gi|285002208|ref|NP_001165444.1| CUG triplet repeat, RNA binding protein 2-b [Xenopus laevis]
gi|1568645|gb|AAB09041.1| Etr-3 [Xenopus laevis]
Length = 538
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 53 PDPDAI------KMFVGQIPRSWSEKELKDLFEPYGAVYQINVLRDRSQNPPQSKGCCFV 106
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 107 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 164
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 165 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 224
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 225 VKFADTQKDK 234
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 69/119 (57%), Gaps = 13/119 (10%)
Query: 127 QVRYADGERERL-GAVEY---------KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMR 176
++ +++G ++ GA+++ K+FVG + + +EKE++++F PYG V + ++R
Sbjct: 32 ELLFSNGTTNKMNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKDLFEPYGAVYQINVLR 91
Query: 177 DELK---QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
D + QS+GC FV + R AL A NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 92 DRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 150
Score = 38.9 bits (89), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 453 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 512
Query: 112 ALH 114
A++
Sbjct: 513 AMN 515
>gi|397495532|ref|XP_003818606.1| PREDICTED: CUGBP Elav-like family member 6 isoform 2 [Pan paniscus]
Length = 454
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 110/188 (58%), Gaps = 4/188 (2%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+
Sbjct: 35 GPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLT 93
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ A E + KLFVG L KQ E++V
Sbjct: 94 YCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQQGEEDV 150
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +E+ ++R S+GC FVK+ + A AAI L+G TM G L V+
Sbjct: 151 RRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMAGASSSLVVK 210
Query: 220 FADPKRPR 227
AD R R
Sbjct: 211 LADTDRER 218
>gi|332236064|ref|XP_003267225.1| PREDICTED: CUGBP Elav-like family member 6 isoform 2 [Nomascus
leucogenys]
Length = 454
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 110/188 (58%), Gaps = 4/188 (2%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+
Sbjct: 35 GPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLT 93
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ A E + KLFVG L KQ E++V
Sbjct: 94 YCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQQGEEDV 150
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +E+ ++R S+GC FVK+ + A AAI L+G TM G L V+
Sbjct: 151 RRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMAGASSSLVVK 210
Query: 220 FADPKRPR 227
AD R R
Sbjct: 211 LADTDRER 218
Score = 39.3 bits (90), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 120 PGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE- 178
PG P+Q YA G G LF+ L ++ + E+ + F P+G V + D
Sbjct: 347 PGVADPLQQAYA-GMHHYAGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRA 405
Query: 179 LKQSRGCGFVKYSHRDMALAAINALNGI 206
QS+ GFV + + A AI A+NG
Sbjct: 406 TNQSKCFGFVSFDNPTSAQTAIQAMNGF 433
>gi|324508266|gb|ADY43493.1| CUGBP Elav family member 1-A [Ascaris suum]
Length = 539
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 117/196 (59%), Gaps = 10/196 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
P PD + K+FVG +P++ E++ R LFE+ G+V ++ +++DK T +GCCF+ +
Sbjct: 32 PDPDTI------KMFVGQIPRSWGEQECRELFEQFGSVYQLNVLRDKTTQASRGCCFVTF 85
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVE 160
+A A ALHN LP P+Q++ AD E E KLFVG LNK+ TE++V+
Sbjct: 86 YRRADAIAAQAALHNIRVLPQMHHPVQMKPADSENRN----ERKLFVGMLNKRLTEEDVK 141
Query: 161 EIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220
+F+ +G +ED +++D +SRGC FV +++R A AI ++ TM GC P+ V+F
Sbjct: 142 AMFAHFGHIEDCTVLKDSDGKSRGCAFVTFANRSYAQQAIRLMHHSQTMEGCSTPIVVKF 201
Query: 221 ADPKRPRPGDSRSGPT 236
AD ++ + GP+
Sbjct: 202 ADTQKEKEAKKTVGPS 217
>gi|326911121|ref|XP_003201910.1| PREDICTED: CUGBP Elav-like family member 2-like [Meleagris
gallopavo]
Length = 526
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 53 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 106
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 107 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 164
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 165 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 224
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 225 VKFADTQKDK 234
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 59 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 118
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 119 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 150
>gi|395539013|ref|XP_003771468.1| PREDICTED: CUGBP Elav-like family member 2 isoform 4 [Sarcophilus
harrisii]
Length = 540
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 53 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 106
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 107 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 164
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 165 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 224
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 225 VKFADTQKDK 234
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 59 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 118
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 119 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 150
>gi|327272098|ref|XP_003220823.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 4 [Anolis
carolinensis]
Length = 536
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 53 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 106
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 107 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 164
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 165 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 224
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 225 VKFADTQKDK 234
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 59 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 118
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 119 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 150
Score = 40.0 bits (92), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 31 QKRGFSGRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG 90
QK G S GP A LF+ +P+ ++DI +F GNVI + DK+T
Sbjct: 438 QKEGLSFLKGPEG--------ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTN 489
Query: 91 QQQGCCFIKYATSEEADRAIRALH 114
+ F+ Y A AI+A++
Sbjct: 490 LSKCFGFVSYDNPVSAQAAIQAMN 513
>gi|335292432|ref|XP_003356730.1| PREDICTED: CUGBP, Elav-like family member 6 isoform 3 [Sus scrofa]
Length = 453
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 111/188 (59%), Gaps = 4/188 (2%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+
Sbjct: 35 GPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLT 93
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ A E + KLFVG L KQ E++V
Sbjct: 94 YCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQQGEEDV 150
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +E+ ++R S+GC FVK+ + A AAI +L+G TM G L V+
Sbjct: 151 RRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTMAGASSSLVVK 210
Query: 220 FADPKRPR 227
AD R R
Sbjct: 211 LADTDRER 218
>gi|355692855|gb|EHH27458.1| CUGBP Elav-like family member 6, partial [Macaca mulatta]
Length = 389
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 110/188 (58%), Gaps = 4/188 (2%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+
Sbjct: 24 GPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLT 82
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ A E + KLFVG L KQ E++V
Sbjct: 83 YCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQQGEEDV 139
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +E+ ++R S+GC FVK+ + A AAI L+G TM G L V+
Sbjct: 140 RRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMAGASSSLVVK 199
Query: 220 FADPKRPR 227
AD R R
Sbjct: 200 LADTDRER 207
>gi|297300473|ref|XP_002805600.1| PREDICTED: CUGBP Elav-like family member 2-like [Macaca mulatta]
Length = 501
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 35 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 88
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 89 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 146
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 147 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 206
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 207 VKFADTQKDK 216
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 41 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 100
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 101 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 132
>gi|66269433|gb|AAY43161.1| napor protein isoform [Danio rerio]
Length = 483
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 117/190 (61%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 57 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFV 110
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TL G PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 111 TFYTRKAALEAQNALHNIKTLTGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 168
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSPYG++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 169 DIRVMFSPYGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPMV 228
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 229 VKFADTQKDK 238
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 63 KMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 122
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 123 NALHNIKTLTGMHHPIQMKPADSEKSNAVEDR 154
>gi|60729622|pir||JC7967 Napor protein - zebra fish
gi|14030309|gb|AAK52851.1|AF321194_1 Napor [Danio rerio]
Length = 441
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 117/190 (61%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 11 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFV 64
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TL G PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 65 TFYTRKAALEAQNALHNIKTLTGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 122
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSPYG++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 123 DIRVMFSPYGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPMV 182
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 183 VKFADTQKDK 192
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 77 NALHNIKTLTGMHHPIQMKPADSEKSNAVEDR 108
>gi|146386739|pdb|2DHS|A Chain A, Solution Structure Of Nucleic Acid Binding Protein
Cugbp1ab And Its Binding Study With Dna And Rna
Length = 187
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 111/173 (64%), Gaps = 5/173 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++ +FS +G++
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKN--NAVEDRKLFIGMISKKCTENDIRVMFSSFGQI 134
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD
Sbjct: 135 EECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 187
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 108
>gi|3927998|emb|CAA77110.1| elav-type RNA-binding protein [Mus musculus]
Length = 484
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 11 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 64
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 65 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 122
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 123 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 182
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 183 VKFADTQKDK 192
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 77 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 108
>gi|395822451|ref|XP_003784531.1| PREDICTED: CUGBP Elav-like family member 6 isoform 2 [Otolemur
garnettii]
Length = 454
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 110/188 (58%), Gaps = 4/188 (2%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+
Sbjct: 35 GPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLT 93
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ A E + KLFVG L KQ E++V
Sbjct: 94 YCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQQGEEDV 150
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +E+ ++R S+GC FVK+ + A AAI L+G TM G L V+
Sbjct: 151 RRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMAGASSSLVVK 210
Query: 220 FADPKRPR 227
AD R R
Sbjct: 211 LADTDRER 218
>gi|66269429|gb|AAY43159.1| napor protein short isoform [Danio rerio]
Length = 473
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 117/190 (61%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 43 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFV 96
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TL G PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 97 TFYTRKAALEAQNALHNIKTLTGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 154
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSPYG++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 155 DIRVMFSPYGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPMV 214
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 215 VKFADTQKDK 224
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 49 KMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 108
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 109 NALHNIKTLTGMHHPIQMKPADSEKSNAVEDR 140
>gi|66269431|gb|AAY43160.1| napor protein long isoform [Danio rerio]
Length = 493
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 117/190 (61%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 43 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFV 96
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TL G PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 97 TFYTRKAALEAQNALHNIKTLTGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 154
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSPYG++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 155 DIRVMFSPYGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPMV 214
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 215 VKFADTQKDK 224
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 49 KMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 108
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 109 NALHNIKTLTGMHHPIQMKPADSEKSNAVEDR 140
>gi|327272096|ref|XP_003220822.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 3 [Anolis
carolinensis]
Length = 487
Score = 149 bits (376), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 53 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 106
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 107 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 164
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 165 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 224
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 225 VKFADTQKDK 234
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 59 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 118
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 119 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 150
Score = 39.7 bits (91), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 31 QKRGFSGRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG 90
QK G S GP A LF+ +P+ ++DI +F GNVI + DK+T
Sbjct: 389 QKEGLSFLKGPEG--------ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTN 440
Query: 91 QQQGCCFIKYATSEEADRAIRALH 114
+ F+ Y A AI+A++
Sbjct: 441 LSKCFGFVSYDNPVSAQAAIQAMN 464
>gi|45383614|ref|NP_989591.1| CUGBP Elav-like family member 2 [Gallus gallus]
gi|31747199|gb|AAP57761.1| ELAV-type RNA-binding protein 3 variant 4 [Gallus gallus]
Length = 488
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 117/190 (61%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 11 PDPDAI------KTFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 64
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 65 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 122
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 123 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 182
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 183 VKFADTQKDK 192
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 17 KTFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 77 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 108
Score = 39.3 bits (90), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 403 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 462
Query: 112 ALH 114
A++
Sbjct: 463 AMN 465
>gi|152013390|sp|Q7T2T1.2|CELF2_CHICK RecName: Full=CUGBP Elav-like family member 2; Short=CELF-2;
AltName: Full=Bruno-like protein 3; AltName: Full=CUG
triplet repeat RNA-binding protein 2; Short=CUG-BP2;
AltName: Full=CUG-BP- and ETR-3-like factor 2; AltName:
Full=ELAV-type RNA-binding protein 3; Short=ETR-3;
AltName: Full=RNA-binding protein BRUNOL-3
gi|31747201|gb|AAP57762.1| ELAV-type RNA-binding protein 3 variant L [Gallus gallus]
Length = 484
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 117/190 (61%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 11 PDPDAI------KTFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 64
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 65 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 122
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 123 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 182
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 183 VKFADTQKDK 192
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 17 KTFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 77 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 108
Score = 39.3 bits (90), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 399 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 458
Query: 112 ALH 114
A++
Sbjct: 459 AMN 461
>gi|410931355|ref|XP_003979061.1| PREDICTED: CUGBP Elav-like family member 1-like [Takifugu rubripes]
Length = 378
Score = 149 bits (375), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 112/177 (63%), Gaps = 4/177 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG +P++ EE +R LFE +G V E+ +++D+ Q +GCCF+ Y T + A A
Sbjct: 44 KMFVGQIPRSWSEEQLRELFEPYGVVYEINVLRDRSQNPPQSKGCCFVTYYTRKSALEAQ 103
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
ALHN LPG PIQ++ AD E+ + + KLF+G ++K+ E ++ +FSPYG++E
Sbjct: 104 NALHNMKILPGMHHPIQMKPADSEKNNVE--DRKLFIGMISKKCNENDIRLMFSPYGQIE 161
Query: 171 DVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++R SRGC FV ++ R MA +AI +++ TM GC P+ V+FAD ++ +
Sbjct: 162 ECRILRGPDGLSRGCAFVTFTARQMAQSAIKSMHQSQTMEGCSSPIVVKFADTQKDK 218
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +E+++ E+F PYG V ++ ++RD + QS+GC FV Y R AL A
Sbjct: 44 KMFVGQIPRSWSEEQLRELFEPYGVVYEINVLRDRSQNPPQSKGCCFVTYYTRKSALEAQ 103
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ D +
Sbjct: 104 NALHNMKILPGMHHPIQMKPADSEKNNVEDRK 135
>gi|55730095|emb|CAH91772.1| hypothetical protein [Pongo abelii]
Length = 519
Score = 149 bits (375), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 117/190 (61%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 35 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 88
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 89 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 146
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV S R MA AI A++ TM GC P+
Sbjct: 147 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTSSTRAMAQNAIKAMHQSQTMEGCSSPIV 206
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 207 VKFADTQKDK 216
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 41 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 100
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 101 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 132
Score = 39.3 bits (90), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 423 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 482
Query: 112 ALH 114
A++
Sbjct: 483 AMN 485
>gi|395827351|ref|XP_003786868.1| PREDICTED: CUGBP Elav-like family member 2 isoform 3 [Otolemur
garnettii]
Length = 514
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 117/190 (61%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 35 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 88
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 89 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 146
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FS +G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 147 DIRVMFSAFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 206
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 207 VKFADTQKDK 216
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 41 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 100
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 101 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 132
Score = 38.9 bits (89), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 429 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 488
Query: 112 ALH 114
A++
Sbjct: 489 AMN 491
>gi|395827349|ref|XP_003786867.1| PREDICTED: CUGBP Elav-like family member 2 isoform 2 [Otolemur
garnettii]
Length = 490
Score = 148 bits (374), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 117/190 (61%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 11 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 64
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 65 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 122
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FS +G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 123 DIRVMFSAFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 182
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 183 VKFADTQKDK 192
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 77 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 108
Score = 39.3 bits (90), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 405 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 464
Query: 112 ALH 114
A++
Sbjct: 465 AMN 467
>gi|281203518|gb|EFA77718.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 341
Score = 148 bits (374), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 92/277 (33%), Positives = 155/277 (55%), Gaps = 22/277 (7%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
K+FVG +P + +EE++ +FE+ GN++ +++IKDK+T +GC FI ++T EEAD AI
Sbjct: 14 KVFVGHIPLSFKEEELSGIFEKFGNILNISIIKDKRTNVPKGCAFISFSTKEEADLAINT 73
Query: 113 LHNQHTLPGGV-GPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+++ + G V P+QV+Y+D E E++ E KLF+G L A E V +F YG +E+
Sbjct: 74 VNSSNQFLGDVTKPLQVKYSDNEIEKM---ERKLFIGMLG-SADEDTVTSVFGKYGAIEE 129
Query: 172 VYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPG-- 229
+ ++R++ + +G GF+K+S R+ A AI L+G +T G PL V+FAD +R +
Sbjct: 130 LTIVREKEGRPKGYGFIKFSAREEAEDAIRELDGKHTFAGSSIPLIVKFADTERQKRKKQ 189
Query: 230 --DSRSGP--TFGGPGFGPRFQPPSPRPPPNFGDPIT---DQIPQNAWHPMSPR--NMGP 280
++++ P T+GG G +Q P+ + P + D + Q+ N + PR N+
Sbjct: 190 LMNTQTQPQNTWGGGG-NNFYQQPNQQQFPMYYDNMNMHQHQVNNNPFQRYQPRSTNVYQ 248
Query: 281 LSNPGIRGFGNQLPPRSGDLGMPLNPGGPADVPLPGL 317
++ N+ S DL + P D+ L L
Sbjct: 249 MNQQ-----YNEFQQESSDLFIYYLPQNYGDLELKML 280
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQS-RGCGFVKYSHRDMALAA 199
+ +K+FVG + E+E+ IF +G + ++ +++D+ +GC F+ +S ++ A A
Sbjct: 11 IGFKVFVGHIPLSFKEEELSGIFEKFGNILNISIIKDKRTNVPKGCAFISFSTKEEADLA 70
Query: 200 INALNGIYTMRG-CDQPLTVRFAD 222
IN +N G +PL V+++D
Sbjct: 71 INTVNSSNQFLGDVTKPLQVKYSD 94
>gi|395827353|ref|XP_003786869.1| PREDICTED: CUGBP Elav-like family member 2 isoform 4 [Otolemur
garnettii]
Length = 488
Score = 148 bits (374), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 117/190 (61%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 11 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 64
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 65 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 122
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FS +G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 123 DIRVMFSAFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 182
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 183 VKFADTQKDK 192
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 77 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 108
Score = 39.3 bits (90), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 403 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 462
Query: 112 ALH 114
A++
Sbjct: 463 AMN 465
>gi|148224750|ref|NP_001079970.1| CUGBP Elav-like family member 1-B [Xenopus laevis]
gi|47123025|gb|AAH70706.1| Cugbp1-b protein [Xenopus laevis]
Length = 529
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 118/199 (59%), Gaps = 15/199 (7%)
Query: 43 PDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKY 100
PD D S K+FVG VP++ E+++R LFE++G V E+ +++D+ Q +GCCFI +
Sbjct: 35 PDHPDSDSI-KMFVGQVPRSWSEKELRELFEQYGAVYEINVLRDRSQNPPQSKGCCFITF 93
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLG-----------AVE-YKLFVG 148
T + A A ALHN LPG PIQ++ AD E+ G +VE KLF+G
Sbjct: 94 YTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNGGLNTVLFPEHPASVEDRKLFIG 153
Query: 149 SLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYT 208
++K+ E ++ +FS +G++E+ ++R SRGC F+ ++ R MA AI A++ T
Sbjct: 154 MVSKKCNENDIRTLFSQFGQIEESRILRGPDGMSRGCAFITFTTRSMAQMAIKAMHQAQT 213
Query: 209 MRGCDQPLTVRFADPKRPR 227
M GC P+ V+FAD ++ +
Sbjct: 214 MEGCSSPIVVKFADTQKDK 232
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE+ E+F YG V ++ ++RD + QS+GC F+ + R AL A
Sbjct: 44 KMFVGQVPRSWSEKELRELFEQYGAVYEINVLRDRSQNPPQSKGCCFITFYTRKAALEAQ 103
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPG 229
NAL+ + + G P+ ++ AD ++ G
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNNGG 132
>gi|395827347|ref|XP_003786866.1| PREDICTED: CUGBP Elav-like family member 2 isoform 1 [Otolemur
garnettii]
Length = 521
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 117/190 (61%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 42 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 95
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 96 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 153
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FS +G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 154 DIRVMFSAFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 213
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 214 VKFADTQKDK 223
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 48 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 107
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 108 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 139
Score = 39.3 bits (90), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 436 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 495
Query: 112 ALH 114
A++
Sbjct: 496 AMN 498
>gi|55729085|emb|CAH91279.1| hypothetical protein [Pongo abelii]
Length = 360
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 117/190 (61%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 35 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 88
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 89 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 146
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC +
Sbjct: 147 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSSIV 206
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 207 VKFADTQKDK 216
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 56/93 (60%), Gaps = 3/93 (3%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAA 199
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 40 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 99
Query: 200 INALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 100 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 132
>gi|345310083|ref|XP_001515840.2| PREDICTED: CUGBP, Elav-like family member 2 [Ornithorhynchus
anatinus]
Length = 426
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 53 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 106
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 107 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 164
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 165 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 224
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 225 VKFADTQKDK 234
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 59 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 118
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 119 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 150
>gi|399217298|emb|CCF73985.1| unnamed protein product [Babesia microti strain RI]
Length = 432
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 110/182 (60%), Gaps = 11/182 (6%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFV VPK+ + D+ P F G V EV +IKDK T + C F+K + +AD A+RA
Sbjct: 30 KLFVSRVPKSYTDTDLIPHFVPFGKVEEVTIIKDKTTNAHKLCAFVKMGSIADADSAVRA 89
Query: 113 LHNQHTLPGGVGPIQVRYADGERERL---------GAVEYKLFVGSLNKQATEKEVEEIF 163
LHN L +G +QV+YA GE RL G + KLF+GS+ K TE++++++F
Sbjct: 90 LHNIKVLDASLGALQVKYAVGEVARLGLSNANSEPGVDQVKLFIGSVPKTITEEQIKKVF 149
Query: 164 SPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
YG+VE+V++M+D S+GC FVK S+++ L AI +G T+ +PL VRFA+
Sbjct: 150 GEYGQVEEVFIMKDLSTGLSKGCAFVKMSYKEQGLYAIKMADGKLTIDN-SKPLEVRFAE 208
Query: 223 PK 224
K
Sbjct: 209 AK 210
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
KLF+GSVPKT EE I+ +F E+G V EV ++KD TG +GC F+K + E+ AI+
Sbjct: 129 VKLFIGSVPKTITEEQIKKVFGEYGQVEEVFIMKDLSTGLSKGCAFVKMSYKEQGLYAIK 188
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV 141
+ T+ P++VR+A+ + ++ A+
Sbjct: 189 MADGKLTIDNS-KPLEVRFAEAKGKQQNAI 217
Score = 46.2 bits (108), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P D+ F + G ++ + DK TG+ +G F+ Y+T E A +AI
Sbjct: 332 ANLFIFHIPYDWYYADLVKTFSQFGTIVSARIATDKGTGRNRGFAFVSYSTVESAVKAIT 391
Query: 112 ALH 114
++
Sbjct: 392 CMN 394
>gi|387916084|gb|AFK11651.1| CUGBP Elav-like family member 2 isoform 2 [Callorhinchus milii]
Length = 513
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 117/190 (61%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 41 PDPDAI------KMFVGQIPRSWTEKELKELFEPYGAVHQINVLRDRSQNPPQSKGCCFV 94
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 95 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 152
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FS +G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 153 DIRVMFSAFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 212
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 213 VKFADTQKDK 222
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + TEKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 47 KMFVGQIPRSWTEKELKELFEPYGAVHQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 106
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 107 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 138
>gi|71980775|ref|NP_492958.3| Protein UNC-75 [Caenorhabditis elegans]
gi|33469616|gb|AAQ19851.1| putative RNA-binding protein [Caenorhabditis elegans]
gi|38422759|emb|CAB03896.4| Protein UNC-75 [Caenorhabditis elegans]
Length = 514
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 110/181 (60%), Gaps = 8/181 (4%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D+R LFE+ G + E ++KDK TG +GC F+ Y + A R
Sbjct: 30 KLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTYCHRDSAVRCQAT 89
Query: 113 LHNQHTLPGGVGPIQVRYADGE------RERLGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
LH+Q TLPG +QV+ AD + ++++ + KLF+G L+KQ +E EV +F+ +
Sbjct: 90 LHDQKTLPGMNRAMQVKPADTDSRPASPKDKMD--DKKLFIGMLSKQQSEDEVRALFATF 147
Query: 167 GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
G +++V ++R S+GC FVKY H A AI+AL+G TM G L V++AD ++
Sbjct: 148 GELDEVTVLRGADGASKGCAFVKYKHGLDAHMAISALHGSQTMPGASSSLVVKYADTEKE 207
Query: 227 R 227
R
Sbjct: 208 R 208
Score = 42.4 bits (98), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 135 RERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHR 193
RE LG LF+ L ++ + E+ ++F+P+G + + D QS+ GFV Y +
Sbjct: 421 REVLGPDGCNLFIYHLPQEFGDAELIQMFAPFGHIVSAKVFVDRATNQSKCFGFVSYDNI 480
Query: 194 DMALAAINALNGI 206
+ AAI A+NG
Sbjct: 481 HSSQAAITAMNGF 493
>gi|380807355|gb|AFE75553.1| CUGBP Elav-like family member 6 isoform 1, partial [Macaca mulatta]
Length = 226
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 110/188 (58%), Gaps = 4/188 (2%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+
Sbjct: 34 GPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLT 92
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ A E + KLFVG L KQ E++V
Sbjct: 93 YCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQQGEEDV 149
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +E+ ++R S+GC FVK+ + A AAI L+G TM G L V+
Sbjct: 150 RRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMAGASSSLVVK 209
Query: 220 FADPKRPR 227
AD R R
Sbjct: 210 LADTDRER 217
>gi|255636493|gb|ACU18585.1| unknown [Glycine max]
Length = 161
Score = 147 bits (370), Expect = 3e-32, Method: Composition-based stats.
Identities = 70/148 (47%), Positives = 102/148 (68%), Gaps = 3/148 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG VPK E+++ +F+E V EV +I+DK + +GCCF+ + EEAD+A+ A
Sbjct: 17 KLFVGQVPKRMAEDEVLAMFKEFALVDEVNIIRDKASRAPRGCCFVICPSREEADKAVNA 76
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
HN+ TLPG P+QV+YADGE ERL E+KLF+G L K +E EV ++FS YG ++D+
Sbjct: 77 CHNKKTLPGASSPLQVKYADGELERL---EHKLFIGMLPKNISEDEVSDLFSMYGTIKDL 133
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAI 200
++R + S+GC F+KY ++ ALAA+
Sbjct: 134 QILRGSQQTSKGCAFLKYETKEQALAAL 161
Score = 58.2 bits (139), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 131 ADGERE-RLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQS-RGCGFV 188
A+G+ E + KLFVG + K+ E EV +F + V++V ++RD+ ++ RGC FV
Sbjct: 3 AEGKEESKFSEESVKLFVGQVPKRMAEDEVLAMFKEFALVDEVNIIRDKASRAPRGCCFV 62
Query: 189 KYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
R+ A A+NA + T+ G PL V++AD + R
Sbjct: 63 ICPSREEADKAVNACHNKKTLPGASSPLQVKYADGELER 101
>gi|47224440|emb|CAG08690.1| unnamed protein product [Tetraodon nigroviridis]
Length = 515
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 114/190 (60%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E ++R LFE G V ++ +++D+ T Q +GCCF+
Sbjct: 13 PDPDAI------KMFVGQIPRSWSETELRELFEPFGAVHQINILRDRTTNPPQSKGCCFV 66
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TL G PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 67 TFYTRKAALEAQNALHNIKTLSGMHHPIQMKPADSEKTS--AVEDRKLFIGMVSKKYGEN 124
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
E+ +FS +G++E+ ++R QSRGC FV ++ R MA AI ++ TM GC PL
Sbjct: 125 EIRMMFSSFGQIEECRVLRGPDGQSRGCAFVTFATRAMAQNAIKTMHHSQTMEGCSSPLV 184
Query: 218 VRFADPKRPR 227
V+ AD +R +
Sbjct: 185 VKLADTQRDK 194
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +E E+ E+F P+G V + ++RD QS+GC FV + R AL A
Sbjct: 19 KMFVGQIPRSWSETELRELFEPFGAVHQINILRDRTTNPPQSKGCCFVTFYTRKAALEAQ 78
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 79 NALHNIKTLSGMHHPIQMKPADSEKTSAVEDR 110
>gi|218200205|gb|EEC82632.1| hypothetical protein OsI_27223 [Oryza sativa Indica Group]
gi|222637626|gb|EEE67758.1| hypothetical protein OsJ_25469 [Oryza sativa Japonica Group]
Length = 497
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 106/182 (58%), Gaps = 2/182 (1%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
DG +LFVG VP++ EEDI + + +I+D+ TG +GCCF+ ++ EEA
Sbjct: 7 DGGERVRLFVGQVPRSMAEEDILAVVRAAARADDATVIRDRATGASRGCCFVVCSSREEA 66
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
D+AI A HN+ TLPG +QV+YADGE ERL A E KLF+G L + E EV +FS Y
Sbjct: 67 DKAIAAYHNKCTLPGASRAMQVKYADGELERLAA-EQKLFIGMLPRDVKENEVSALFSQY 125
Query: 167 GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGI-YTMRGCDQPLTVRFADPKR 225
G + + ++R K + C +++ ++ A AAI ALNG G L V+ AD +R
Sbjct: 126 GNIRQLKVLRSPQKTRKACAILEFGSKEHARAAIEALNGTRVVFNGSSATLVVKLADTER 185
Query: 226 PR 227
+
Sbjct: 186 EK 187
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEE 105
++G A LFV +P+ +ED+ LF+E G ++ + D+ TG + F+ Y T
Sbjct: 412 IEGPPRANLFVYDIPQEYGDEDLANLFQEFGRILSTKVFIDRATGVSKCFGFVSYDTPAS 471
Query: 106 ADRAIRALHNQHTLPGGVGPIQVR 129
A AIR + N + G + +Q++
Sbjct: 472 AQAAIRRM-NGSQIGGKMLKVQLK 494
>gi|13537210|dbj|BAB40781.1| HrETR-1 [Halocynthia roretzi]
Length = 594
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 104/176 (59%), Gaps = 3/176 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
KLF+G VPK E ++RP+FE +G + E++++ DK TG +GC F+ Y A A
Sbjct: 103 VKLFIGQVPKNWTEHELRPIFEPYGEIYELSVLHDKYTGMHKGCAFLTYCKKTPAINAQN 162
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
LH Q TLPG P+QV+ AD + + KLFVG L K+ TE+++ ++F +G +E+
Sbjct: 163 FLHEQKTLPGMNHPMQVKPADTVNK---GEDRKLFVGMLGKRQTEEDIRQLFEKFGHIEE 219
Query: 172 VYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R QS+GC FVK S A AAI+AL+G TM G + V+ AD + R
Sbjct: 220 CTILRTPDGQSKGCSFVKLSTSTGARAAIDALHGSQTMPGASSSIVVKLADTDKER 275
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Query: 44 DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATS 103
D V+ KLFVG + K EEDIR LFE+ G++ E +++ GQ +GC F+K +TS
Sbjct: 183 DTVNKGEDRKLFVGMLGKRQTEEDIRQLFEKFGHIEECTILRTPD-GQSKGCSFVKLSTS 241
Query: 104 EEADRAIRALHNQHTLPGGVGPIQVRYADGERER 137
A AI ALH T+PG I V+ AD ++ER
Sbjct: 242 TGARAAIDALHGSQTMPGASSSIVVKLADTDKER 275
>gi|348521218|ref|XP_003448123.1| PREDICTED: CUGBP Elav-like family member 2-like [Oreochromis
niloticus]
Length = 483
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 116/190 (61%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 11 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFV 64
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TL G PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 65 TFYTRKAALEAQNALHNIKTLTGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 122
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FS +G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 123 DIRVMFSAFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 182
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 183 VKFADTQKDK 192
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 77 NALHNIKTLTGMHHPIQMKPADSEKSNAVEDR 108
>gi|124808251|ref|XP_001348269.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
gi|23497160|gb|AAN36708.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
Length = 514
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 109/179 (60%), Gaps = 7/179 (3%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFV S+PK EEDI+ +F+E+GN+ +V IKDKK + F++ + +AI+
Sbjct: 55 KLFVSSIPKNLTEEDIKSIFQEYGNIQDVVFIKDKKPNVNRSNVFVRMESIFYGQKAIKD 114
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEY-------KLFVGSLNKQATEKEVEEIFSP 165
LH + TL +GP+ V++A GE E+ G KLFVGSL K+ TE+E+ E+F+
Sbjct: 115 LHGKRTLCETLGPLIVKFAIGELEKYGVNMNNANENEAKLFVGSLPKEITEEELRELFNR 174
Query: 166 YGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224
YG V +VY+M++ S+ C FV Y++++ + AI +NG ++P+ VRFA+ K
Sbjct: 175 YGNVTEVYIMKNSNGISKRCAFVNYAYKEQGIFAIQNMNGKIATENAEKPIEVRFAETK 233
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDEL-KQSRGCGFVKYSHRDMALAAINA 202
KLFV S+ K TE++++ IF YG ++DV ++D+ +R FV+ AI
Sbjct: 55 KLFVSSIPKNLTEEDIKSIFQEYGNIQDVVFIKDKKPNVNRSNVFVRMESIFYGQKAIKD 114
Query: 203 LNGIYTMRGCDQPLTVRFADPKRPRPG 229
L+G T+ PL V+FA + + G
Sbjct: 115 LHGKRTLCETLGPLIVKFAIGELEKYG 141
>gi|363742943|ref|XP_003642748.1| PREDICTED: CUGBP Elav-like family member 3 isoform 2 [Gallus
gallus]
Length = 464
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 109/175 (62%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y E A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L+KQ +++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLSKQQADEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAI AL+G T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQSHAEAQAAIAALHGSRTLPGASSSLVVKFADTEKER 179
Score = 38.9 bits (89), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ + E+ ++F P+G V + D QS+ GFV + + A AAI+A+
Sbjct: 381 IFIYHLPQEFADTEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIHAM 440
Query: 204 NGI 206
NG
Sbjct: 441 NGF 443
>gi|209878013|ref|XP_002140448.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
gi|209556054|gb|EEA06099.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
Length = 546
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 113/179 (63%), Gaps = 10/179 (5%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E++++ LFE +GNV+ ++++++K TG +G + + +AD AIR
Sbjct: 111 KLFVGRIPRNIEEDELKKLFELYGNVVNISIVREKNTGIHRGAALVTMESIAQADYAIRE 170
Query: 113 LHNQHTLPGGVGPIQVRYADGERERL---------GAVEYKLFVGSLNKQATEKEVEEIF 163
L+ L GP++V+Y+ GE ER G + KLFVG+L K TE+E+ ++F
Sbjct: 171 LNLIKVLDNLRGPLKVQYSTGEAERFGFEAESCIPGVDQVKLFVGALPKNITEEEISDVF 230
Query: 164 SPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221
SPYG++ ++++MR+ RGC FVKY+ ++ L AI +L+G T+ ++PL VRFA
Sbjct: 231 SPYGQINEIFIMREIHTGFCRGCAFVKYAFKEQGLYAIASLHGAATLGDVNRPLEVRFA 289
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 3/109 (2%)
Query: 23 LPVPQLSGQKRGFSGRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVA 82
L V +G+ F G + + G KLFVG++PK EE+I +F +G + E+
Sbjct: 184 LKVQYSTGEAERF---GFEAESCIPGVDQVKLFVGALPKNITEEEISDVFSPYGQINEIF 240
Query: 83 LIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYA 131
++++ TG +GC F+KYA E+ AI +LH TL P++VR+A
Sbjct: 241 IMREIHTGFCRGCAFVKYAFKEQGLYAIASLHGAATLGDVNRPLEVRFA 289
Score = 42.7 bits (99), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAA 199
+E KLFVG + + E E++++F YG V ++ ++R++ RG V A A
Sbjct: 108 MEIKLFVGRIPRNIEEDELKKLFELYGNVVNISIVREKNTGIHRGAALVTMESIAQADYA 167
Query: 200 INALNGIYTMRGCDQPLTVRFADPKRPRPG 229
I LN I + PL V+++ + R G
Sbjct: 168 IRELNLIKVLDNLRGPLKVQYSTGEAERFG 197
>gi|440800622|gb|ELR21658.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 229
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 109/170 (64%), Gaps = 6/170 (3%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG VPK +E IR F +G ++ + +++D+ T +GC F+ Y+T E AD+AI A
Sbjct: 13 KLFVGQVPKNVQEATIRSFFSPYGEIVHMNILRDRFTQISKGCGFVSYSTKEAADKAISA 72
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH+ T+P P+QVRYAD E +++ E+KLF+G L TE+ + +IF+PYG +E +
Sbjct: 73 LHSVVTIPPHTAPLQVRYADEELQQMA--EHKLFIGKLPTTVTEELLRQIFAPYGNIEKL 130
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
+++ CGFVKY +R+ A AI ALNG + G ++PL V++AD
Sbjct: 131 NILKG--PADVNCGFVKYDNREEAEKAIRALNG--KVVGSNEPLVVKYAD 176
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAIN 201
+KLFVG + K E + FSPYG + + ++RD Q S+GCGFV YS ++ A AI+
Sbjct: 12 WKLFVGQVPKNVQEATIRSFFSPYGEIVHMNILRDRFTQISKGCGFVSYSTKEAADKAIS 71
Query: 202 ALNGIYTMRGCDQPLTVRFAD 222
AL+ + T+ PL VR+AD
Sbjct: 72 ALHSVVTIPPHTAPLQVRYAD 92
>gi|410908153|ref|XP_003967555.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 2 [Takifugu
rubripes]
Length = 510
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 113/190 (59%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P+ E ++R LFE G V ++ +++D+ T Q +GCCF+
Sbjct: 35 PDPDAI------KMFVGQIPRAWSETELRELFEPFGAVHQINILRDRTTNPPQSKGCCFV 88
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TL G PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 89 TFYTRKAALEAQNALHNIKTLSGMHHPIQMKPADSEKTS--AVEDRKLFIGMVSKKYGEN 146
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
E+ +FS +G++E+ ++R QSRGC FV ++ R MA AI ++ TM GC PL
Sbjct: 147 EIRMMFSSFGQIEECRVLRGPDGQSRGCAFVTFATRAMAQNAIKTMHHSQTMEGCSSPLV 206
Query: 218 VRFADPKRPR 227
V+ AD +R +
Sbjct: 207 VKLADTQRDK 216
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +E E+ E+F P+G V + ++RD QS+GC FV + R AL A
Sbjct: 41 KMFVGQIPRAWSETELRELFEPFGAVHQINILRDRTTNPPQSKGCCFVTFYTRKAALEAQ 100
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 101 NALHNIKTLSGMHHPIQMKPADSEKTSAVEDR 132
>gi|410918516|ref|XP_003972731.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 1 [Takifugu
rubripes]
Length = 521
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 116/190 (61%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 43 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFV 96
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TL G PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 97 TFYTRKAALEAQNALHNIKTLTGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 154
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FS +G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 155 DIRVMFSAFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 214
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 215 VKFADTQKDK 224
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 49 KMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 108
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 109 NALHNIKTLTGMHHPIQMKPADSEKSNAVEDR 140
>gi|363742939|ref|XP_003642747.1| PREDICTED: CUGBP Elav-like family member 3 isoform 1 [Gallus
gallus]
Length = 451
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 109/175 (62%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y E A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L+KQ +++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLSKQQADEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAI AL+G T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQSHAEAQAAIAALHGSRTLPGASSSLVVKFADTEKER 179
Score = 38.9 bits (89), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ + E+ ++F P+G V + D QS+ GFV + + A AAI+A+
Sbjct: 368 IFIYHLPQEFADTEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIHAM 427
Query: 204 NGI 206
NG
Sbjct: 428 NGF 430
>gi|410908151|ref|XP_003967554.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 1 [Takifugu
rubripes]
Length = 530
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 113/190 (59%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P+ E ++R LFE G V ++ +++D+ T Q +GCCF+
Sbjct: 53 PDPDAI------KMFVGQIPRAWSETELRELFEPFGAVHQINILRDRTTNPPQSKGCCFV 106
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TL G PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 107 TFYTRKAALEAQNALHNIKTLSGMHHPIQMKPADSEKT--SAVEDRKLFIGMVSKKYGEN 164
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
E+ +FS +G++E+ ++R QSRGC FV ++ R MA AI ++ TM GC PL
Sbjct: 165 EIRMMFSSFGQIEECRVLRGPDGQSRGCAFVTFATRAMAQNAIKTMHHSQTMEGCSSPLV 224
Query: 218 VRFADPKRPR 227
V+ AD +R +
Sbjct: 225 VKLADTQRDK 234
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +E E+ E+F P+G V + ++RD QS+GC FV + R AL A
Sbjct: 59 KMFVGQIPRAWSETELRELFEPFGAVHQINILRDRTTNPPQSKGCCFVTFYTRKAALEAQ 118
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 119 NALHNIKTLSGMHHPIQMKPADSEKTSAVEDR 150
>gi|441625924|ref|XP_003257673.2| PREDICTED: CUGBP Elav-like family member 2 isoform 1 [Nomascus
leucogenys]
Length = 523
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 118/193 (61%), Gaps = 14/193 (7%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 47 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 100
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 101 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 158
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRG---CGFVKYSHRDMALAAINALNGIYTMRGCDQ 214
++ +FSP+G++E+ ++R SRG C FV +S R MA AI A++ TM GC
Sbjct: 159 DIRVMFSPFGQIEECRILRGPDGLSRGNSSCAFVTFSTRAMAQNAIKAMHQSQTMEGCSS 218
Query: 215 PLTVRFADPKRPR 227
P+ V+FAD ++ +
Sbjct: 219 PIVVKFADTQKDK 231
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 53 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 112
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 113 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 144
Score = 39.3 bits (90), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 438 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 497
Query: 112 ALH 114
A++
Sbjct: 498 AMN 500
>gi|348513017|ref|XP_003444039.1| PREDICTED: CUGBP Elav-like family member 2-like [Oreochromis
niloticus]
Length = 531
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 76/190 (40%), Positives = 114/190 (60%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E +++ LFE G V ++ +++D+ Q +GCCF+
Sbjct: 55 PDPDSI------KMFVGQIPRSWSETELKELFEPFGAVHQINILRDRTQNPPQSKGCCFV 108
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TL G PIQ++ AD E+ AVE KLFVG ++K+ E
Sbjct: 109 TFYTRKAALEAQNALHNIKTLSGMHHPIQMKPADSEKTS--AVEDRKLFVGMVSKKYGEN 166
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
EV +FS +G++E+ ++R QSRGC FV ++ R MA AI ++ TM GC PL
Sbjct: 167 EVRMMFSSFGQIEECRILRGPDGQSRGCAFVTFATRAMAQNAIKTMHHSQTMEGCSSPLV 226
Query: 218 VRFADPKRPR 227
V+FAD +R +
Sbjct: 227 VKFADTQRDK 236
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +E E++E+F P+G V + ++RD + QS+GC FV + R AL A
Sbjct: 61 KMFVGQIPRSWSETELKELFEPFGAVHQINILRDRTQNPPQSKGCCFVTFYTRKAALEAQ 120
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 121 NALHNIKTLSGMHHPIQMKPADSEKTSAVEDR 152
>gi|410908161|ref|XP_003967559.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 6 [Takifugu
rubripes]
Length = 538
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 113/190 (59%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P+ E ++R LFE G V ++ +++D+ T Q +GCCF+
Sbjct: 53 PDPDAI------KMFVGQIPRAWSETELRELFEPFGAVHQINILRDRTTNPPQSKGCCFV 106
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TL G PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 107 TFYTRKAALEAQNALHNIKTLSGMHHPIQMKPADSEKTS--AVEDRKLFIGMVSKKYGEN 164
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
E+ +FS +G++E+ ++R QSRGC FV ++ R MA AI ++ TM GC PL
Sbjct: 165 EIRMMFSSFGQIEECRVLRGPDGQSRGCAFVTFATRAMAQNAIKTMHHSQTMEGCSSPLV 224
Query: 218 VRFADPKRPR 227
V+ AD +R +
Sbjct: 225 VKLADTQRDK 234
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +E E+ E+F P+G V + ++RD QS+GC FV + R AL A
Sbjct: 59 KMFVGQIPRAWSETELRELFEPFGAVHQINILRDRTTNPPQSKGCCFVTFYTRKAALEAQ 118
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 119 NALHNIKTLSGMHHPIQMKPADSEKTSAVEDR 150
>gi|410908157|ref|XP_003967557.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 4 [Takifugu
rubripes]
Length = 482
Score = 145 bits (366), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 113/190 (59%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P+ E ++R LFE G V ++ +++D+ T Q +GCCF+
Sbjct: 53 PDPDAI------KMFVGQIPRAWSETELRELFEPFGAVHQINILRDRTTNPPQSKGCCFV 106
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TL G PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 107 TFYTRKAALEAQNALHNIKTLSGMHHPIQMKPADSEKT--SAVEDRKLFIGMVSKKYGEN 164
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
E+ +FS +G++E+ ++R QSRGC FV ++ R MA AI ++ TM GC PL
Sbjct: 165 EIRMMFSSFGQIEECRVLRGPDGQSRGCAFVTFATRAMAQNAIKTMHHSQTMEGCSSPLV 224
Query: 218 VRFADPKRPR 227
V+ AD +R +
Sbjct: 225 VKLADTQRDK 234
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +E E+ E+F P+G V + ++RD QS+GC FV + R AL A
Sbjct: 59 KMFVGQIPRAWSETELRELFEPFGAVHQINILRDRTTNPPQSKGCCFVTFYTRKAALEAQ 118
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 119 NALHNIKTLSGMHHPIQMKPADSEKTSAVEDR 150
>gi|410908159|ref|XP_003967558.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 5 [Takifugu
rubripes]
Length = 490
Score = 145 bits (365), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 113/190 (59%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P+ E ++R LFE G V ++ +++D+ T Q +GCCF+
Sbjct: 53 PDPDAI------KMFVGQIPRAWSETELRELFEPFGAVHQINILRDRTTNPPQSKGCCFV 106
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TL G PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 107 TFYTRKAALEAQNALHNIKTLSGMHHPIQMKPADSEKTS--AVEDRKLFIGMVSKKYGEN 164
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
E+ +FS +G++E+ ++R QSRGC FV ++ R MA AI ++ TM GC PL
Sbjct: 165 EIRMMFSSFGQIEECRVLRGPDGQSRGCAFVTFATRAMAQNAIKTMHHSQTMEGCSSPLV 224
Query: 218 VRFADPKRPR 227
V+ AD +R +
Sbjct: 225 VKLADTQRDK 234
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +E E+ E+F P+G V + ++RD QS+GC FV + R AL A
Sbjct: 59 KMFVGQIPRAWSETELRELFEPFGAVHQINILRDRTTNPPQSKGCCFVTFYTRKAALEAQ 118
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 119 NALHNIKTLSGMHHPIQMKPADSEKTSAVEDR 150
>gi|410908155|ref|XP_003967556.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 3 [Takifugu
rubripes]
Length = 468
Score = 145 bits (365), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 113/190 (59%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P+ E ++R LFE G V ++ +++D+ T Q +GCCF+
Sbjct: 39 PDPDAI------KMFVGQIPRAWSETELRELFEPFGAVHQINILRDRTTNPPQSKGCCFV 92
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TL G PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 93 TFYTRKAALEAQNALHNIKTLSGMHHPIQMKPADSEKTS--AVEDRKLFIGMVSKKYGEN 150
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
E+ +FS +G++E+ ++R QSRGC FV ++ R MA AI ++ TM GC PL
Sbjct: 151 EIRMMFSSFGQIEECRVLRGPDGQSRGCAFVTFATRAMAQNAIKTMHHSQTMEGCSSPLV 210
Query: 218 VRFADPKRPR 227
V+ AD +R +
Sbjct: 211 VKLADTQRDK 220
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +E E+ E+F P+G V + ++RD QS+GC FV + R AL A
Sbjct: 45 KMFVGQIPRAWSETELRELFEPFGAVHQINILRDRTTNPPQSKGCCFVTFYTRKAALEAQ 104
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 105 NALHNIKTLSGMHHPIQMKPADSEKTSAVEDR 136
>gi|410918520|ref|XP_003972733.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 3 [Takifugu
rubripes]
Length = 501
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 116/190 (61%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 43 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFV 96
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TL G PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 97 TFYTRKAALEAQNALHNIKTLTGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 154
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FS +G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 155 DIRVMFSAFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 214
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 215 VKFADTQKDK 224
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 49 KMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 108
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 109 NALHNIKTLTGMHHPIQMKPADSEKSNAVEDR 140
>gi|67611128|ref|XP_667137.1| RNA binding protein [Cryptosporidium hominis TU502]
gi|54658240|gb|EAL36907.1| RNA binding protein [Cryptosporidium hominis]
Length = 903
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 113/179 (63%), Gaps = 10/179 (5%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG VP+ E+D+R LF+ +G V+ V++I++K TG +G + + +AD A+R
Sbjct: 306 KLFVGRVPRNIEEDDLRDLFKLYGRVVNVSVIREKSTGIHRGAALVTMESVAQADFALRE 365
Query: 113 LHNQHTLPGGVGPIQVRYADGERERL---------GAVEYKLFVGSLNKQATEKEVEEIF 163
L++ L GP++V+Y+ GE ERL G + KLFVG+L + TE E+ E+F
Sbjct: 366 LNSIKVLDELRGPLKVQYSTGEPERLGFESESCIPGVDQVKLFVGALPRNITEDEIRELF 425
Query: 164 SPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221
SPYG++ ++++MR+ +GC FVKY+ ++ L AI +L+G T+ ++P+ VRFA
Sbjct: 426 SPYGQINEIFIMREPHSGVGKGCAFVKYAFKEQGLFAIKSLHGALTLADVNRPIEVRFA 484
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 56/93 (60%)
Query: 39 GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFI 98
G S + G KLFVG++P+ E++IR LF +G + E+ ++++ +G +GC F+
Sbjct: 392 GFESESCIPGVDQVKLFVGALPRNITEDEIRELFSPYGQINEIFIMREPHSGVGKGCAFV 451
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYA 131
KYA E+ AI++LH TL PI+VR+A
Sbjct: 452 KYAFKEQGLFAIKSLHGALTLADVNRPIEVRFA 484
Score = 45.8 bits (107), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFV---KYSHRDMA 196
VE KLFVG + + E ++ ++F YGRV +V ++R++ RG V + D A
Sbjct: 303 VEIKLFVGRVPRNIEEDDLRDLFKLYGRVVNVSVIREKSTGIHRGAALVTMESVAQADFA 362
Query: 197 LAAINALNGIYTMRGCDQPLTVRFADPKRPRPG 229
L +N++ + +RG PL V+++ + R G
Sbjct: 363 LRELNSIKVLDELRG---PLKVQYSTGEPERLG 392
>gi|281211191|gb|EFA85357.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 515
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 117/173 (67%), Gaps = 5/173 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEH-GNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
KLFVG +PK+ E++++ +F ++ G++ E+++I++K+T + QGC F+ ++ ++A++AI+
Sbjct: 4 KLFVGQIPKSFNEDNLKSMFADYEGSIQEISVIRNKQTNEPQGCAFVTLSSKDDAEKAIQ 63
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
LH+ PG +QV+YAD E+E+ KLFVG L + E +++ +F+ YG VED
Sbjct: 64 TLHSSKKFPGVSNSLQVKYADSEQEKQST---KLFVGMLPRTYQEDDIKTLFADYGEVED 120
Query: 172 VYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224
+ L+R +S+GCGF+++ +R+ L+AI+ALNGI + L V+FAD +
Sbjct: 121 ICLLRGNNNESKGCGFIRFQNRESCLSAISALNGI-NLPPSPNNLVVKFADTE 172
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
+ LFV ++P + D+ LF +G+V+ + DK TG +G F+ Y S A+ AI
Sbjct: 375 SNLFVYNIPNYYNDSDMFNLFSPYGHVVSSKVYTDKSTGLSKGFGFVSYDNSIAANSAIA 434
Query: 112 ALH 114
L+
Sbjct: 435 NLN 437
>gi|410918518|ref|XP_003972732.1| PREDICTED: CUGBP Elav-like family member 2-like isoform 2 [Takifugu
rubripes]
Length = 474
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 116/190 (61%), Gaps = 11/190 (5%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 43 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFV 96
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TL G PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 97 TFYTRKAALEAQNALHNIKTLTGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 154
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FS +G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 155 DIRVMFSAFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 214
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 215 VKFADTQKDK 224
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 49 KMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 108
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 109 NALHNIKTLTGMHHPIQMKPADSEKSNAVEDR 140
>gi|363742941|ref|XP_428898.3| PREDICTED: CUGBP Elav-like family member 3 isoform 3 [Gallus
gallus]
Length = 401
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 109/175 (62%), Gaps = 3/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y E A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L+KQ +++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLSKQQADEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAI AL+G T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQSHAEAQAAIAALHGSRTLPGASSSLVVKFADTEKER 179
>gi|156102324|ref|XP_001616855.1| RNA binding protein [Plasmodium vivax Sal-1]
gi|148805729|gb|EDL47128.1| RNA binding protein, putative [Plasmodium vivax]
Length = 507
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 110/180 (61%), Gaps = 7/180 (3%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
AKLFV S+PK+ E DI+ +FEE+G++ +V IKDKK + F++ + A +AI+
Sbjct: 86 AKLFVSSIPKSLTENDIKTIFEEYGSIKDVVFIKDKKPNVNRANVFVRMESIYYAQKAIQ 145
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-------EYKLFVGSLNKQATEKEVEEIFS 164
LH + L +GP+ V++A GE E+ G E KLFVGSL K+ E+++ +F+
Sbjct: 146 DLHGKKVLCETLGPLIVKFAIGELEKYGVNMHNANENEAKLFVGSLPKEIAEEQIRNLFN 205
Query: 165 PYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224
YG V +VY+M++ S+ C FV Y++++ + AI LNG + ++P+ VRFA+ K
Sbjct: 206 RYGNVTEVYIMKNSNGVSKRCAFVNYAYKEQGIFAIQNLNGKIAIENAEKPIEVRFAETK 265
Score = 47.4 bits (111), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDEL-KQSRGCGFVKYSHRDMALAAINA 202
KLFV S+ K TE +++ IF YG ++DV ++D+ +R FV+ A AI
Sbjct: 87 KLFVSSIPKSLTENDIKTIFEEYGSIKDVVFIKDKKPNVNRANVFVRMESIYYAQKAIQD 146
Query: 203 LNGIYTMRGCDQPLTVRFADPKRPRPG 229
L+G + PL V+FA + + G
Sbjct: 147 LHGKKVLCETLGPLIVKFAIGELEKYG 173
Score = 40.4 bits (93), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A +F+ +P + D+ F GN+I + +K TG+ +G F+ Y + A A++
Sbjct: 398 ANIFIFHIPNEWIQNDLLAAFSPFGNIISAHIATEKDTGRNRGFAFVSYDNVDSAINAVK 457
Query: 112 ALH 114
++
Sbjct: 458 YMN 460
>gi|147772817|emb|CAN71673.1| hypothetical protein VITISV_044358 [Vitis vinifera]
Length = 450
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 115/229 (50%), Gaps = 57/229 (24%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG VPK E + +F+E V EV +IKDK T +GCCF+ + +EAD+A+ A
Sbjct: 16 KLFVGQVPKNMTEAQLLAMFKEFALVDEVNIIKDKATRASRGCCFVICPSRQEADKAVNA 75
Query: 113 LHN----------------------------------------------QHTLPG----- 121
H+ +HT G
Sbjct: 76 CHSDKRTLPGKHVNISHIGFMWHDAAADAWKIKATIVANENQQRKKCTREHTNFGLRLAF 135
Query: 122 ---GVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE 178
P+QV+YADGE ERL E+KLFVG L K +E EV +FS YG ++D+ ++R
Sbjct: 136 QVSASSPLQVKYADGELERL---EHKLFVGMLPKNVSEAEVSSLFSKYGTIKDLQILRGS 192
Query: 179 LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ S+GC F+KY ++ ALAA+ A+NG + M G PL V++AD ++ R
Sbjct: 193 QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKER 241
>gi|148706789|gb|EDL38736.1| trinucleotide repeat containing 4, isoform CRA_b [Mus musculus]
Length = 467
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 103/169 (60%), Gaps = 4/169 (2%)
Query: 59 VPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHT 118
+P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A ALH Q T
Sbjct: 16 IPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKT 75
Query: 119 LPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE 178
LPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++ ++R
Sbjct: 76 LPGMNRPIQVKPADSESRG----DRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGP 131
Query: 179 LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 132 DGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 180
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K +ED+R +FE G + E +++ G +GC F+K+ T EA AI
Sbjct: 97 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPD-GTSKGCAFVKFQTHAEAQAAINT 155
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH+ TLPG + V++AD E+ER
Sbjct: 156 LHSSRTLPGASSSLVVKFADTEKER 180
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 384 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 443
Query: 204 NGI 206
NG
Sbjct: 444 NGF 446
>gi|148706792|gb|EDL38739.1| trinucleotide repeat containing 4, isoform CRA_e [Mus musculus]
Length = 447
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 103/169 (60%), Gaps = 4/169 (2%)
Query: 59 VPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHT 118
+P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A ALH Q T
Sbjct: 15 IPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKT 74
Query: 119 LPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE 178
LPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++ ++R
Sbjct: 75 LPGMNRPIQVKPADSESRG----DRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGP 130
Query: 179 LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 131 DGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K +ED+R +FE G + E +++ G +GC F+K+ T EA AI
Sbjct: 96 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPD-GTSKGCAFVKFQTHAEAQAAINT 154
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH+ TLPG + V++AD E+ER
Sbjct: 155 LHSSRTLPGASSSLVVKFADTEKER 179
Score = 43.9 bits (102), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 123 VGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQ 181
V P+Q YA G + G +F+ L ++ T+ E+ ++F P+G V + D Q
Sbjct: 343 VDPLQQAYA-GMQHYTGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQ 401
Query: 182 SRGCGFVKYSHRDMALAAINALNGI 206
S+ GFV + + A AAI A+NG
Sbjct: 402 SKCFGFVSFDNPASAQAAIQAMNGF 426
>gi|115473901|ref|NP_001060549.1| Os07g0663300 [Oryza sativa Japonica Group]
gi|33354192|dbj|BAC81150.1| putative CUG triplet repeat RNA-binding protein 1 [Oryza sativa
Japonica Group]
gi|50510234|dbj|BAD31432.1| putative CUG triplet repeat RNA-binding protein 1 [Oryza sativa
Japonica Group]
gi|113612085|dbj|BAF22463.1| Os07g0663300 [Oryza sativa Japonica Group]
gi|215713561|dbj|BAG94698.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 427
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 108/184 (58%), Gaps = 4/184 (2%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
DG +LFVG VP++ EEDI + + +I+D+ TG +GCCF+ ++ EEA
Sbjct: 7 DGGERVRLFVGQVPRSMAEEDILAVVRAAARADDATVIRDRATGASRGCCFVVCSSREEA 66
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
D+AI A HN+ TLPG +QV+YADGE ERL A E KLF+G L + E EV +FS Y
Sbjct: 67 DKAIAAYHNKCTLPGASRAMQVKYADGELERLAA-EQKLFIGMLPRDVKENEVSALFSQY 125
Query: 167 GRVEDVYLMRD--ELKQSRGCGFVKYSHRDMALAAINALNGI-YTMRGCDQPLTVRFADP 223
G + + ++R + +++ C +++ ++ A AAI ALNG G L V+ AD
Sbjct: 126 GNIRQLKVLRSPQKTRKAAACAILEFGSKEHARAAIEALNGTRVVFNGSSATLVVKLADT 185
Query: 224 KRPR 227
+R +
Sbjct: 186 EREK 189
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEE 105
++G A LFV +P+ +ED+ LF+E G ++ + D+ TG + F+ Y T
Sbjct: 342 IEGPPRANLFVYDIPQEYGDEDLANLFQEFGRILSTKVFIDRATGVSKCFGFVSYDTPAS 401
Query: 106 ADRAIRALHNQHTLPGGVGPIQVR 129
A AIR + N + G + +Q++
Sbjct: 402 AQAAIRRM-NGSQIGGKMLKVQLK 424
>gi|196012894|ref|XP_002116309.1| hypothetical protein TRIADDRAFT_60275 [Trichoplax adhaerens]
gi|190581264|gb|EDV21342.1| hypothetical protein TRIADDRAFT_60275 [Trichoplax adhaerens]
Length = 456
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 103/175 (58%), Gaps = 4/175 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ EED+ LF++ G + E+A+IKD+ T Q +GC F+ Y A+ A A
Sbjct: 36 KLFVGQLPRDCTEEDLHSLFDQFGPIYELAVIKDRTTKQHKGCAFVTYCKKSSAEAAQSA 95
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
H + L G P+QV+ AD E E KLFVG L K E E++ +FSPYG +E+V
Sbjct: 96 FHEKKVLSGMPRPMQVKPADCENRE----ERKLFVGMLGKLDDENELKSMFSPYGSIEEV 151
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GCGFVK+S + A AI L+G M G L V+FAD ++ +
Sbjct: 152 TILRAIDGSSKGCGFVKFSTKSEAQVAIQNLHGSRNMPGASHQLVVKFADTEKDK 206
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDEL-KQSRGCGFVKYSHRDMALAAINAL 203
LF+ L + T+ ++ IF+PYG V + +++ KQS+ GFV Y + A AI+ L
Sbjct: 372 LFIYHLPPEFTDYDLHNIFAPYGNVVSAKVYINKITKQSKCFGFVSYDNASSAHHAISTL 431
Query: 204 NGIYTMRGCDQPLTVRFADPK 224
NG M + L V + PK
Sbjct: 432 NG---MMVYGKKLKVEYKKPK 449
>gi|126649123|ref|XP_001388078.1| RNA binding protein [Cryptosporidium parvum Iowa II]
gi|126117166|gb|EAZ51266.1| RNA binding protein, putative [Cryptosporidium parvum Iowa II]
Length = 906
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 112/179 (62%), Gaps = 10/179 (5%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG VP+ E+D+R LF+ +G V+ V++I++K TG +G + + +AD A+R
Sbjct: 307 KLFVGRVPRNIEEDDLRDLFKLYGRVVNVSVIREKSTGIHRGAALVTMESVAQADFALRE 366
Query: 113 LHNQHTLPGGVGPIQVRYADGERERL---------GAVEYKLFVGSLNKQATEKEVEEIF 163
L++ L GP++V+Y+ GE ERL G + KLFVG+L + E E+ E+F
Sbjct: 367 LNSIKVLDELRGPLKVQYSTGEPERLGFESESCIPGVDQVKLFVGALPRNIIEDEIRELF 426
Query: 164 SPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221
SPYG++ ++++MR+ +GC FVKY+ ++ L AI +L+G T+ ++P+ VRFA
Sbjct: 427 SPYGQINEIFIMREPHSGVGKGCAFVKYAFKEQGLFAIKSLHGALTLADVNRPIEVRFA 485
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 56/93 (60%)
Query: 39 GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFI 98
G S + G KLFVG++P+ E++IR LF +G + E+ ++++ +G +GC F+
Sbjct: 393 GFESESCIPGVDQVKLFVGALPRNIIEDEIRELFSPYGQINEIFIMREPHSGVGKGCAFV 452
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYA 131
KYA E+ AI++LH TL PI+VR+A
Sbjct: 453 KYAFKEQGLFAIKSLHGALTLADVNRPIEVRFA 485
Score = 46.2 bits (108), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFV---KYSHRDMA 196
VE KLFVG + + E ++ ++F YGRV +V ++R++ RG V + D A
Sbjct: 304 VEIKLFVGRVPRNIEEDDLRDLFKLYGRVVNVSVIREKSTGIHRGAALVTMESVAQADFA 363
Query: 197 LAAINALNGIYTMRGCDQPLTVRFADPKRPRPG 229
L +N++ + +RG PL V+++ + R G
Sbjct: 364 LRELNSIKVLDELRG---PLKVQYSTGEPERLG 393
>gi|321461546|gb|EFX72577.1| hypothetical protein DAPPUDRAFT_326142 [Daphnia pulex]
Length = 229
Score = 142 bits (359), Expect = 4e-31, Method: Composition-based stats.
Identities = 73/157 (46%), Positives = 101/157 (64%), Gaps = 3/157 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E D+RP+FEE G + E+ ++KDK TG +GC F+ Y T E A A A
Sbjct: 37 KLFVGQIPRNLEEADLRPMFEEFGKIYELTVLKDKLTGMHKGCAFLTYCTRESAINAQNA 96
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH + TLPG PIQV+ AD + + KLFVG L+KQ T+++V ++F PYG +E+
Sbjct: 97 LHEKRTLPGMNRPIQVKPADSDNR---GEDRKLFVGMLSKQQTDEDVRQLFLPYGTIEEC 153
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTM 209
++R QS+GC FVK+S A AIN+L+G TM
Sbjct: 154 TILRGPDGQSKGCAFVKFSTHAEAQTAINSLHGSQTM 190
Score = 59.3 bits (142), Expect = 8e-06, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K +ED+R LF +G + E +++ GQ +GC F+K++T EA AI +
Sbjct: 125 KLFVGMLSKQQTDEDVRQLFLPYGTIEECTILRGPD-GQSKGCAFVKFSTHAEAQTAINS 183
Query: 113 LHNQHTLP 120
LH T+P
Sbjct: 184 LHGSQTMP 191
Score = 53.9 bits (128), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINA 202
KLFVG + + E ++ +F +G++ ++ +++D+L +GC F+ Y R+ A+ A NA
Sbjct: 37 KLFVGQIPRNLEEADLRPMFEEFGKIYELTVLKDKLTGMHKGCAFLTYCTRESAINAQNA 96
Query: 203 LNGIYTMRGCDQPLTVRFAD 222
L+ T+ G ++P+ V+ AD
Sbjct: 97 LHEKRTLPGMNRPIQVKPAD 116
>gi|118402071|ref|XP_001033355.1| hypothetical protein TTHERM_00421000 [Tetrahymena thermophila]
gi|89287703|gb|EAR85692.1| hypothetical protein TTHERM_00421000 [Tetrahymena thermophila
SB210]
Length = 307
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 117/186 (62%), Gaps = 8/186 (4%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +PKT +E ++ F + G + EV +I+D K GQ +GC F+K+A+ +A++AI A
Sbjct: 55 KLFVGQLPKTWEKEQVKDFFSKFGRIYEVQIIRDNK-GQHKGCAFVKFASMTDAEKAIEA 113
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGA---VEYKLFVGSLNKQATEKEVEEIFSPYGRV 169
+ N T PG +++++AD E ERLG ++KLF+GSL K TE+ +++IF +G +
Sbjct: 114 VKNT-TFPGMKNNVEIKWADNEEERLGVNQDSDHKLFIGSLPKSCTEQNIKDIFEFFGEI 172
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP--KRPR 227
E+++LM+D + +R F+K+ ++ A AI LN + + P+ VRFA K+ +
Sbjct: 173 EELHLMKDNQQNTRQ-AFLKFKQKEKAHLAIRNLNSQVYINDAENPIEVRFAKKYVKQEK 231
Query: 228 PGDSRS 233
P + +S
Sbjct: 232 PINDQS 237
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEE 105
V+ S KLF+GS+PK+ E++I+ +FE G + E+ L+KD + +Q F+K+ E+
Sbjct: 140 VNQDSDHKLFIGSLPKSCTEQNIKDIFEFFGEIEELHLMKDNQQNTRQA--FLKFKQKEK 197
Query: 106 ADRAIRALHNQHTLPGGVGPIQVRYA 131
A AIR L++Q + PI+VR+A
Sbjct: 198 AHLAIRNLNSQVYINDAENPIEVRFA 223
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 135 RERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRD 194
R + V+ KLFVG L K +++V++ FS +GR+ +V ++RD Q +GC FVK++
Sbjct: 46 RRQENTVDLKLFVGQLPKTWEKEQVKDFFSKFGRIYEVQIIRDNKGQHKGCAFVKFASMT 105
Query: 195 MALAAINALNGIYTMRGCDQPLTVRFADPKRPRPG 229
A AI A+ T G + +++AD + R G
Sbjct: 106 DAEKAIEAVKNT-TFPGMKNNVEIKWADNEEERLG 139
>gi|221060510|ref|XP_002260900.1| RNA binding protein [Plasmodium knowlesi strain H]
gi|193810974|emb|CAQ42872.1| RNA binding protein, putative [Plasmodium knowlesi strain H]
Length = 497
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 108/179 (60%), Gaps = 7/179 (3%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFV SVPK E DI+ +FEE+G++ +V IKDKK + F++ + A +AI+
Sbjct: 75 KLFVSSVPKNLTENDIKSIFEEYGSIKDVVFIKDKKPNVNRANVFVRMESIYYAQKAIQD 134
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAV-------EYKLFVGSLNKQATEKEVEEIFSP 165
LH + L +GP+ V++A GE E+ G E KLFVGSL K+ E+++ +F+
Sbjct: 135 LHGKKVLCETLGPLIVKFAIGELEKYGVNMHNANENEAKLFVGSLPKEIAEEQIRNLFNR 194
Query: 166 YGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224
YG V +VY+M++ S+ C FV Y++++ + AI LNG + ++P+ VRFA+ K
Sbjct: 195 YGNVTEVYIMKNSNGVSKRCAFVNYAYKEQGIFAIQNLNGKIAIENAEKPIEVRFAETK 253
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
AKLFVGS+PK EE IR LF +GNV EV ++K+ G + C F+ YA E+ AI+
Sbjct: 172 AKLFVGSLPKEIAEEQIRNLFNRYGNVTEVYIMKN-SNGVSKRCAFVNYAYKEQGIFAIQ 230
Query: 112 ALHNQHTLPGGVGPIQVRYAD 132
L+ + + PI+VR+A+
Sbjct: 231 NLNGKIAIENAEKPIEVRFAE 251
Score = 47.4 bits (111), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDEL-KQSRGCGFVKYSHRDMALAAINA 202
KLFV S+ K TE +++ IF YG ++DV ++D+ +R FV+ A AI
Sbjct: 75 KLFVSSVPKNLTENDIKSIFEEYGSIKDVVFIKDKKPNVNRANVFVRMESIYYAQKAIQD 134
Query: 203 LNGIYTMRGCDQPLTVRFADPKRPRPG 229
L+G + PL V+FA + + G
Sbjct: 135 LHGKKVLCETLGPLIVKFAIGELEKYG 161
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A +F+ +P + D+ F GN+I + +K TG+ +G F+ Y + A A++
Sbjct: 388 ANIFIFHIPNEWIQNDLLAAFSPFGNIISAHIATEKDTGRNRGFAFVSYDNVDSAINAVK 447
Query: 112 ALH 114
++
Sbjct: 448 YMN 450
>gi|308465068|ref|XP_003094796.1| CRE-UNC-75 protein [Caenorhabditis remanei]
gi|308246879|gb|EFO90831.1| CRE-UNC-75 protein [Caenorhabditis remanei]
Length = 491
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 107/179 (59%), Gaps = 4/179 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D+R LFE+ G + E ++KDK TG +GC F+ + + A R
Sbjct: 30 KLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTFCHRDSAQRCQTT 89
Query: 113 LHNQHTLPGGVGPIQVRYADGERE----RLGAVEYKLFVGSLNKQATEKEVEEIFSPYGR 168
LH+Q TLPG +QV+ AD + + A + KLF+G L+KQ +E +V +F+ +G
Sbjct: 90 LHDQKTLPGMNRAMQVKPADTDSRPASPKDKADDKKLFIGMLSKQQSEDDVRTLFAAFGE 149
Query: 169 VEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+++V ++R S+GC FVKY A AI+AL+G TM G L V++AD ++ R
Sbjct: 150 LDEVTVLRGADGASKGCAFVKYKSGFDAHMAISALHGSQTMPGASSSLVVKYADTEKER 208
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
D + KLF+G + K E+D+R LF G + EV +++ G +GC F+KY + +A
Sbjct: 119 DKADDKKLFIGMLSKQQSEDDVRTLFAAFGELDEVTVLRGAD-GASKGCAFVKYKSGFDA 177
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERER 137
AI ALH T+PG + V+YAD E+ER
Sbjct: 178 HMAISALHGSQTMPGASSSLVVKYADTEKER 208
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 135 RERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHR 193
RE LG LF+ L ++ + E+ ++F+P+G V + D QS+ GFV Y +
Sbjct: 398 REVLGPDGCNLFIYHLPQEFGDAELIQMFAPFGHVVSAKVFVDRATNQSKCFGFVSYDNI 457
Query: 194 DMALAAINALNGI 206
+ AAI A+NG
Sbjct: 458 HSSQAAIAAMNGF 470
>gi|389585865|dbj|GAB68595.1| RNA binding protein, partial [Plasmodium cynomolgi strain B]
Length = 508
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 109/179 (60%), Gaps = 7/179 (3%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFV S+PK+ E DI+ +FEE+G++ +V IKDKK + F++ + A +AI+
Sbjct: 86 KLFVSSIPKSLTENDIKTIFEEYGSIKDVVFIKDKKPNVNRANVFVRMESIYYAQKAIQD 145
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAV-------EYKLFVGSLNKQATEKEVEEIFSP 165
LH + L +GP+ V++A GE E+ G E KLFVGSL K+ E+++ +F+
Sbjct: 146 LHGKKVLCETLGPLIVKFAIGELEKYGVNMHNANENEAKLFVGSLPKEIAEEQIRNLFNR 205
Query: 166 YGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224
YG V +VY+M++ S+ C FV Y++++ + AI LNG + ++P+ VRFA+ K
Sbjct: 206 YGNVTEVYIMKNSNGVSKRCAFVNYAYKEQGIFAIQNLNGKIAIENAEKPIEVRFAETK 264
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
AKLFVGS+PK EE IR LF +GNV EV ++K+ G + C F+ YA E+ AI+
Sbjct: 183 AKLFVGSLPKEIAEEQIRNLFNRYGNVTEVYIMKN-SNGVSKRCAFVNYAYKEQGIFAIQ 241
Query: 112 ALHNQHTLPGGVGPIQVRYAD 132
L+ + + PI+VR+A+
Sbjct: 242 NLNGKIAIENAEKPIEVRFAE 262
Score = 47.4 bits (111), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDEL-KQSRGCGFVKYSHRDMALAAINA 202
KLFV S+ K TE +++ IF YG ++DV ++D+ +R FV+ A AI
Sbjct: 86 KLFVSSIPKSLTENDIKTIFEEYGSIKDVVFIKDKKPNVNRANVFVRMESIYYAQKAIQD 145
Query: 203 LNGIYTMRGCDQPLTVRFADPKRPRPG 229
L+G + PL V+FA + + G
Sbjct: 146 LHGKKVLCETLGPLIVKFAIGELEKYG 172
Score = 40.0 bits (92), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A +F+ +P + D+ F GN+I + +K TG+ +G F+ Y + A A++
Sbjct: 399 ANIFIFHIPNEWIQNDLLAAFSPFGNIISAHIATEKDTGRNRGFAFVSYDNVDSAINAVK 458
Query: 112 ALH 114
++
Sbjct: 459 YMN 461
>gi|401405877|ref|XP_003882388.1| putative RNA binding protein [Neospora caninum Liverpool]
gi|325116803|emb|CBZ52356.1| putative RNA binding protein [Neospora caninum Liverpool]
Length = 1060
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 115/201 (57%), Gaps = 28/201 (13%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P T EE + LF + G + ++ LI+D+ T +GC F++ + +ADRAIR
Sbjct: 102 KLFVGRLPLTVTEEMLCTLFSQFGPIADLLLIRDRHTNAFKGCAFVRMQSITDADRAIRH 161
Query: 113 LHNQHTLPGGVGPIQVRYADGERERL------------GAVEYKLFVGSLNKQATEKEVE 160
L + + L +G +QV+YA GE ERL G + KLFVGSL E +
Sbjct: 162 LDSAYVLDPALGGLQVKYAVGEAERLGLPGTSGSGAAAGVDQVKLFVGSLPPDIKEDALR 221
Query: 161 EIFSPYGRVEDVYLMRDE---------------LKQSR-GCGFVKYSHRDMALAAINALN 204
++F +GRVE+V+LMRD+ K+SR GC FV++++++ AL AI LN
Sbjct: 222 DLFERFGRVEEVFLMRDDQPLSGNHLGGGAAKPGKKSRTGCAFVRFAYKEEALFAIGELN 281
Query: 205 GIYTMRGCDQPLTVRFADPKR 225
G + M G + + VRFA+ +R
Sbjct: 282 GKFVMPGSQRAMEVRFAENRR 302
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQS-RGCGFVKYSHRDMALAA 199
V KLFVG L TE+ + +FS +G + D+ L+RD + +GC FV+ A A
Sbjct: 99 VAIKLFVGRLPLTVTEEMLCTLFSQFGPIADLLLIRDRHTNAFKGCAFVRMQSITDADRA 158
Query: 200 INALNGIYTMRGCDQPLTVRFADPKRPR---PGDSRSGPTFG 238
I L+ Y + L V++A + R PG S SG G
Sbjct: 159 IRHLDSAYVLDPALGGLQVKYAVGEAERLGLPGTSGSGAAAG 200
>gi|308456493|ref|XP_003090683.1| CRE-ETR-1 protein [Caenorhabditis remanei]
gi|308261154|gb|EFP05107.1| CRE-ETR-1 protein [Caenorhabditis remanei]
Length = 612
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 108/183 (59%), Gaps = 4/183 (2%)
Query: 51 FAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAI 110
F+ + +P+ E D R LFE +G+V +++DK T +GCCF+ + ++A A
Sbjct: 17 FSYFNIFQIPRQWNEVDCRRLFEAYGSVYSCNILRDKSTQTSKGCCFVTFFHRKDAIEAQ 76
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
ALHN + G P+Q++ AD E E KLF+G L+K+ +E+ + EIFS +G++E
Sbjct: 77 GALHNIKVIDGMHHPVQMKPADTENRN----ERKLFIGQLSKKHSEENLREIFSKFGQIE 132
Query: 171 DVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGD 230
D ++RD +SRGC FV +++R A+ A ++ TM GC PL V+FAD ++ +
Sbjct: 133 DCSVLRDNDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCSAPLVVKFADTQKDKDVK 192
Query: 231 SRS 233
++S
Sbjct: 193 TKS 195
>gi|310689909|pdb|3NNC|A Chain A, Crystal Structure Of Cugbp1 Rrm12-Rna Complex
Length = 175
Score = 141 bits (356), Expect = 9e-31, Method: Composition-based stats.
Identities = 75/177 (42%), Positives = 112/177 (63%), Gaps = 5/177 (2%)
Query: 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEA 106
S K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A
Sbjct: 1 SDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAA 60
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSP 165
A ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++ +FS
Sbjct: 61 LEAQNALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDIRVMFSS 118
Query: 166 YGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
+G++E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+FAD
Sbjct: 119 FGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175
Score = 58.2 bits (139), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 5 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 64
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 65 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 96
>gi|397632370|gb|EJK70525.1| hypothetical protein THAOC_08111, partial [Thalassiosira oceanica]
Length = 548
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/180 (39%), Positives = 107/180 (59%), Gaps = 10/180 (5%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG VPKT EED+ +FE +G ++++ +I+D+++G +GC F+ + + E+A R +
Sbjct: 24 KLFVGQVPKTLIEEDLAYVFEPYGPIVDLTVIRDRRSGNHRGCAFVTFESGEDAMRVVAD 83
Query: 113 LHNQHTLPGGVGPIQVRYA----DGERERLGAVE---YKLFVGSLNKQATEKEVEEIFSP 165
+H ++ G P QVR A DG+ E E KLFVG L + A E V ++F+P
Sbjct: 84 MHGRYKFDGAPWPAQVRPAAGEIDGDGENNDGFEGEGTKLFVGQLPRDAEEDFVRDLFAP 143
Query: 166 YGRVEDVYLMRD---ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
YG + V+++R + GC FVKY R MA AI AL+G + G D+PL V+FA+
Sbjct: 144 YGSIVSVHIIRKRNPDAAARNGCAFVKYRERSMAERAIEALDGELQLEGVDRPLKVKFAN 203
Score = 43.1 bits (100), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 40 GPSPDL-VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFI 98
GPSP +G + A LF+ +P + D+ F GNVI + D+ TG+ +G F+
Sbjct: 358 GPSPPRPREGPAGANLFIYHLPIDLTDADLATAFNPFGNVISAKVYVDRYTGESKGFGFV 417
Query: 99 KYATSEEADRAIRAL 113
Y + A+ AI +
Sbjct: 418 SYDSVMSAELAIEQM 432
>gi|37588904|gb|AAH04145.2| TNRC4 protein, partial [Homo sapiens]
Length = 291
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 103/169 (60%), Gaps = 4/169 (2%)
Query: 59 VPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHT 118
+P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A ALH Q T
Sbjct: 6 IPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKT 65
Query: 119 LPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE 178
LPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++ ++R
Sbjct: 66 LPGMNRPIQVKPADSESRG----DRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGP 121
Query: 179 LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 122 DGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 170
Score = 75.9 bits (185), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K +ED+R +FE G + E +++ G +GC F+K+ T EA AI
Sbjct: 87 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPD-GTSKGCAFVKFQTHAEAQAAINT 145
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH+ TLPG + V++AD E+ER
Sbjct: 146 LHSSRTLPGASSSLVVKFADTEKER 170
>gi|49328140|gb|AAT58838.1| unknown protein, contains RNA recognition motif,PF00076 [Oryza
sativa Japonica Group]
Length = 381
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/142 (46%), Positives = 96/142 (67%), Gaps = 4/142 (2%)
Query: 87 KKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLF 146
+ TG GCCF+ + EEAD+A+ A HN+ TLPG P+QV+YADGE ERL E+KLF
Sbjct: 57 RCTGPFAGCCFLICPSREEADKAVNAYHNKRTLPGASSPLQVKYADGELERL---EHKLF 113
Query: 147 VGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSR-GCGFVKYSHRDMALAAINALNG 205
+G L K T+ E+ ++FS YG ++D+ ++R + S+ GC F+KY ++ ALAAI ALNG
Sbjct: 114 IGMLPKNVTDAEMTDLFSQYGNIKDLQILRGSQQTSKAGCAFLKYETKEQALAAIEALNG 173
Query: 206 IYTMRGCDQPLTVRFADPKRPR 227
+ + G PL V++AD ++ R
Sbjct: 174 KHKIEGSSVPLVVKWADTEKER 195
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 55/85 (64%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +PK + ++ LF ++GN+ ++ +++ + + GC F+KY T E+A AI A
Sbjct: 111 KLFIGMLPKNVTDAEMTDLFSQYGNIKDLQILRGSQQTSKAGCAFLKYETKEQALAAIEA 170
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
L+ +H + G P+ V++AD E+ER
Sbjct: 171 LNGKHKIEGSSVPLVVKWADTEKER 195
>gi|268561214|ref|XP_002646391.1| C. briggsae CBR-UNC-75 protein [Caenorhabditis briggsae]
Length = 550
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 111/188 (59%), Gaps = 8/188 (4%)
Query: 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEE 105
V + KLFVG +P+ E+D+R LFE+ G + E ++KDK TG +GC F+ + +
Sbjct: 23 VKDADAIKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTFCHRDS 82
Query: 106 ADRAIRALHNQHTLPGGVGPIQVRYADGE------RERLGAVEYKLFVGSLNKQATEKEV 159
A R LH+Q TLPG +QV+ AD + ++++ + KLF+G L+KQ +E +V
Sbjct: 83 AQRCQTTLHDQKTLPGMNRAMQVKPADTDSRPASPKDKMD--DKKLFIGMLSKQQSEDDV 140
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F+ +G +++V ++R S+GC FVKY A AI+AL+G TM G L V+
Sbjct: 141 RTLFAAFGELDEVTVLRGADGASKGCAFVKYKSGFDAHMAISALHGSQTMPGASSSLVVK 200
Query: 220 FADPKRPR 227
+AD ++ R
Sbjct: 201 YADTEKER 208
>gi|345802740|ref|XP_003434959.1| PREDICTED: CUGBP, Elav-like family member 4 [Canis lupus
familiaris]
Length = 448
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 111/205 (54%), Gaps = 8/205 (3%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 27 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 85 KDKKTGQQQGCCFIKYAT--SEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE 142
KD+ TG +GC F Y + S DR R H + +LPG PIQV+ AD E +
Sbjct: 87 KDRFTGMHKGCRFSTYCSRPSNLRDRGTR--HGEGSLPGMNRPIQVKPADSESR---GED 141
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINA 202
KLFVG LN Q +E +V + +E+ ++R S+GC FVKYS A AAINA
Sbjct: 142 RKLFVGMLNTQQSEDDVRRLVKALRNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINA 201
Query: 203 LNGIYTMRGCDQPLTVRFADPKRPR 227
L+G TM G L V+FAD + R
Sbjct: 202 LHGSQTMPGASSSLVVKFADTDKER 226
>gi|198431449|ref|XP_002130974.1| PREDICTED: similar to HrETR-1 [Ciona intestinalis]
Length = 538
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 102/176 (57%), Gaps = 3/176 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
KLF+G VPK E+++R +F G + E+++++DK TG +GC F+ Y A A
Sbjct: 75 VKLFIGQVPKNWEEKELRQVFAPFGEIFELSVLRDKYTGMHKGCAFLTYTQKTSAMNAQN 134
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+LH + TLPG PIQV+ AD + + KLFVG L K+ E +V +F P+G +E+
Sbjct: 135 SLHERKTLPGMNHPIQVKPADTVSK---GEDRKLFVGMLGKRQNEDDVRILFEPFGTIEE 191
Query: 172 VYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R QS+GC FVK S A +A+ AL+G TM G L V+FAD + R
Sbjct: 192 CTILRTPEGQSKGCAFVKLSCHQEAKSAMEALHGSQTMPGASSSLVVKFADTDKER 247
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Query: 44 DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATS 103
D V KLFVG + K E+D+R LFE G + E +++ + GQ +GC F+K +
Sbjct: 155 DTVSKGEDRKLFVGMLGKRQNEDDVRILFEPFGTIEECTILRTPE-GQSKGCAFVKLSCH 213
Query: 104 EEADRAIRALHNQHTLPGGVGPIQVRYADGERER 137
+EA A+ ALH T+PG + V++AD ++ER
Sbjct: 214 QEAKSAMEALHGSQTMPGASSSLVVKFADTDKER 247
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 18 PLPQSLPVPQLSGQKRGFSGRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGN 77
P+ QS+ QL S P + DG + LF+ +P+ + D+ +F+ GN
Sbjct: 422 PVAQSITANQLQTNALLASSTNAPQKEGPDGCN---LFIYHLPQEFSDADLANVFQPFGN 478
Query: 78 VIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALH 114
VI + D+ T Q + F+ + + + AI+ ++
Sbjct: 479 VISAKVFIDRATNQSKCFGFVSFDNAISSQAAIQTMN 515
>gi|222631366|gb|EEE63498.1| hypothetical protein OsJ_18314 [Oryza sativa Japonica Group]
Length = 492
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/142 (46%), Positives = 96/142 (67%), Gaps = 4/142 (2%)
Query: 87 KKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLF 146
+ TG GCCF+ + EEAD+A+ A HN+ TLPG P+QV+YADGE ERL E+KLF
Sbjct: 18 RCTGPFAGCCFLICPSREEADKAVNAYHNKRTLPGASSPLQVKYADGELERL---EHKLF 74
Query: 147 VGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSR-GCGFVKYSHRDMALAAINALNG 205
+G L K T+ E+ ++FS YG ++D+ ++R + S+ GC F+KY ++ ALAAI ALNG
Sbjct: 75 IGMLPKNVTDAEMTDLFSQYGNIKDLQILRGSQQTSKAGCAFLKYETKEQALAAIEALNG 134
Query: 206 IYTMRGCDQPLTVRFADPKRPR 227
+ + G PL V++AD ++ R
Sbjct: 135 KHKIEGSSVPLVVKWADTEKER 156
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 55/85 (64%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +PK + ++ LF ++GN+ ++ +++ + + GC F+KY T E+A AI A
Sbjct: 72 KLFIGMLPKNVTDAEMTDLFSQYGNIKDLQILRGSQQTSKAGCAFLKYETKEQALAAIEA 131
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
L+ +H + G P+ V++AD E+ER
Sbjct: 132 LNGKHKIEGSSVPLVVKWADTEKER 156
>gi|207028384|ref|NP_001128707.1| CUGBP, Elav-like family member 2 [Xenopus laevis]
gi|197359134|gb|ACH69783.1| RNA binding protein Bruno-like 3b [Xenopus laevis]
Length = 493
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 118/194 (60%), Gaps = 15/194 (7%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 53 PDPDAI------KMFVGQIPRSWSEKELKDLFEPYGAVYQINVLRDRSQNPPQSKGCCFV 106
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 107 TFYTRKAALEAQNALHNIKTLPGVHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 164
Query: 158 EVEEIFSPYGRVEDVYLMR--DELKQS--RGCGFVKYSHRDMALAAINALNGIYTMRGCD 213
++ +FSP+G++E+ ++R D L ++ C FV +S R M AI A++ TM GC
Sbjct: 165 DIRVMFSPFGQIEECRILRGPDGLSRASQHCCAFVTFSTRAMTQNAIKAMHQSQTMEGCS 224
Query: 214 QPLTVRFADPKRPR 227
P+ V+FAD ++ +
Sbjct: 225 SPIVVKFADTQKDK 238
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 69/119 (57%), Gaps = 13/119 (10%)
Query: 127 QVRYADGERERL-GAVEY---------KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMR 176
++ +++G ++ GA+++ K+FVG + + +EKE++++F PYG V + ++R
Sbjct: 32 ELLFSNGTNNKMNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKDLFEPYGAVYQINVLR 91
Query: 177 DELK---QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
D + QS+GC FV + R AL A NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 92 DRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGVHHPIQMKPADSEKSNAVEDR 150
>gi|328873245|gb|EGG21612.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 370
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 115/176 (65%), Gaps = 5/176 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
K+FVG +P T +E+++ +F++ G+++ +++IKDKKT +GC FI Y T EEAD AI
Sbjct: 15 KVFVGHIPLTMKEDELSEIFDKFGSILNISIIKDKKTSVPRGCAFISYGTKEEADNAINT 74
Query: 113 LHNQHTLPGGVG-PIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
++ + G + P+QV+Y+D E E++ E KLFVG L + E +++++FS YG +ED
Sbjct: 75 MNATNQYIGDMNKPLQVKYSDNEIEKM---ERKLFVGMLG-TSNEDQIKQLFSKYGNIED 130
Query: 172 VYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++R+ + +G GFVK+S R+ A AI ++ T+ G P+ V+FAD +R +
Sbjct: 131 INIVREPDGKPKGYGFVKFSMREEAEEAIRDMDSKQTLPGSTLPIIVKFADTERQK 186
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQS--RGCGFVKYSHRDMALAAI 200
+K+FVG + E E+ EIF +G + ++ +++D+ K S RGC F+ Y ++ A AI
Sbjct: 14 FKVFVGHIPLTMKEDELSEIFDKFGSILNISIIKDK-KTSVPRGCAFISYGTKEEADNAI 72
Query: 201 NALNGIYTMRG-CDQPLTVRFAD 222
N +N G ++PL V+++D
Sbjct: 73 NTMNATNQYIGDMNKPLQVKYSD 95
Score = 47.4 bits (111), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
LF+ +P + + +++ LF+++GNV+ + DK TGQ + F+ Y S+ A +AI L
Sbjct: 292 LFIYYLPASYGDAELKNLFQQYGNVVSAKVFIDKNTGQSKCFGFVSYDRSQSAIQAINNL 351
Query: 114 HNQHT 118
+ H
Sbjct: 352 NGFHV 356
>gi|328871825|gb|EGG20195.1| hypothetical protein DFA_07315 [Dictyostelium fasciculatum]
Length = 551
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 111/177 (62%), Gaps = 5/177 (2%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIE-VALIKDKKTGQQQGCCFIKYATSEEADRAI 110
K+F+G +PK+ E+D+R +F + + IE + +I++K T + QGC FI + A+++I
Sbjct: 5 VKIFIGQIPKSFTEDDLREMFADFVDSIEEIKVIRNKATQEPQGCAFITMTNPDVAEKSI 64
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
+ LHN PG +QV+YAD E+E+L KLFVG L K+ E +V ++FS YG V+
Sbjct: 65 QQLHNSKKFPGVSNFLQVKYADSEQEKLST---KLFVGMLPKEYNEDDVRKLFSDYGDVD 121
Query: 171 DVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++ ++R QS+ CGF+K+ R+ L AI++LNGI + L V+FAD ++ R
Sbjct: 122 EICILRGPNNQSKSCGFIKFQSRESCLNAISSLNGI-RIPPSPHNLVVKFADTEKDR 177
Score = 39.3 bits (90), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEAD 107
G S + LFV ++P + ++ LF+ G VI + DK TG +G F+ + A
Sbjct: 464 GPSGSNLFVYNIPNFYTDVELSVLFDPFGAVISSKVFIDKNTGTSKGFGFVSFDNPNSAT 523
Query: 108 RAIRALH 114
AI L+
Sbjct: 524 TAITNLN 530
>gi|167521936|ref|XP_001745306.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776264|gb|EDQ89884.1| predicted protein [Monosiga brevicollis MX1]
Length = 389
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 105/185 (56%), Gaps = 3/185 (1%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
P+ L KLF+G +P+ EED+ +F E G++ EV +++D++T +GC F+ +
Sbjct: 6 PAATLTKDPDAMKLFIGQIPRNYSEEDLTHIFSEFGHIYEVMILRDRQTHNSKGCAFLTF 65
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVE 160
T + A AI H + TLP P+QV+ AD ++ E KLFVG L + E ++
Sbjct: 66 TTRQAAVDAIERHHEKTTLPNMSHPMQVKIADTDQRN---AERKLFVGMLARTMNEDDLR 122
Query: 161 EIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220
F +G VED+ ++R S+GC FVK+S+ D A +AI L+ TM GC P+ V+
Sbjct: 123 AKFGAFGHVEDLTILRHADGSSKGCAFVKFSNADEAQSAIANLHHSETMDGCRSPIVVKV 182
Query: 221 ADPKR 225
AD ++
Sbjct: 183 ADNEK 187
Score = 40.4 bits (93), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
DGS+ LF+ +P+ ++ + F GNVI + DK TGQ + F+ Y A
Sbjct: 294 DGSN---LFIYHLPQEFNDQALAATFLPFGNVISAKVFVDKMTGQSKCFGFVSYDNPASA 350
Query: 107 DRAIRALH 114
+ AI A++
Sbjct: 351 EAAITAMN 358
>gi|444516747|gb|ELV11280.1| Poly [ADP-ribose] polymerase 6 [Tupaia chinensis]
Length = 972
Score = 138 bits (348), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 103/175 (58%), Gaps = 6/175 (3%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ A E + KLFVG L KQ E++V +F P+G++++
Sbjct: 68 LHEQKTLPGMSRPIQVKPAASEGR---GEDRKLFVGMLGKQQGEEDVRRLFQPFGQIQEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R SRGC FVK+ + AL L+G TM G L V+ AD R R
Sbjct: 125 TVLRSPDGTSRGCAFVKFGSQGEAL---QGLHGSRTMAGASSSLVVKLADTDRER 176
>gi|73961237|ref|XP_852916.1| PREDICTED: CUGBP, Elav-like family member 4 isoform 1 [Canis lupus
familiaris]
Length = 488
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/213 (38%), Positives = 114/213 (53%), Gaps = 14/213 (6%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 27 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 85 KDKKTGQQQGCCFIKYAT--SEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV- 141
KD+ TG +GC F Y + S DR R H + +LPG PIQV+ AD E R G+
Sbjct: 87 KDRFTGMHKGCRFSTYCSRPSNLRDRGTR--HGEGSLPGMNRPIQVKPADSE-SRGGSSC 143
Query: 142 -------EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRD 194
+ KLFVG LN Q +E +V + +E+ ++R S+GC FVKYS
Sbjct: 144 LRQPPSQDRKLFVGMLNTQQSEDDVRRLVKALRNIEECTILRGPDGNSKGCAFVKYSSHA 203
Query: 195 MALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
A AAINAL+G TM G L V+FAD + R
Sbjct: 204 EAQAAINALHGSQTMPGASSSLVVKFADTDKER 236
>gi|327493207|gb|AEA86310.1| RNA-binding protein [Solanum nigrum]
Length = 187
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/135 (48%), Positives = 91/135 (67%), Gaps = 3/135 (2%)
Query: 93 QGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNK 152
+GCCF+ + EEA++AI A HN+ TLPG P+QV+YADG ERL E+KLFVG L K
Sbjct: 4 RGCCFVICPSREEANKAITACHNKQTLPGASSPLQVKYADGVLERL---EHKLFVGMLPK 60
Query: 153 QATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGC 212
++ EV +FS YG + D+ ++R + SRG F+KY ++ A+AA+ ALNG +TM G
Sbjct: 61 NVSDLEVSSLFSQYGTITDLQILRGSQQASRGYAFLKYEKKEQAIAAVEALNGKHTMEGA 120
Query: 213 DQPLTVRFADPKRPR 227
PL V++AD +R R
Sbjct: 121 TVPLVVKWADTERER 135
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 7/88 (7%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQ---GCCFIKYATSEEADRA 109
KLFVG +PK + ++ LF ++G + ++ +++ G QQ G F+KY E+A A
Sbjct: 52 KLFVGMLPKNVSDLEVSSLFSQYGTITDLQILR----GSQQASRGYAFLKYEKKEQAIAA 107
Query: 110 IRALHNQHTLPGGVGPIQVRYADGERER 137
+ AL+ +HT+ G P+ V++AD ERER
Sbjct: 108 VEALNGKHTMEGATVPLVVKWADTERER 135
>gi|297697028|ref|XP_002825676.1| PREDICTED: LOW QUALITY PROTEIN: CUGBP Elav-like family member 6
[Pongo abelii]
Length = 466
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 102/170 (60%), Gaps = 4/170 (2%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+
Sbjct: 35 GPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLT 93
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ A E + KLFVG L KQ E++V
Sbjct: 94 YCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQQGEEDV 150
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTM 209
+F P+G +E+ ++R S+GC FVK+ + A AAI L+G TM
Sbjct: 151 RRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTM 200
>gi|359323408|ref|XP_854054.3| PREDICTED: CUGBP, Elav-like family member 6 [Canis lupus
familiaris]
Length = 413
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 106/177 (59%), Gaps = 5/177 (2%)
Query: 34 GFSG-RGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQ 92
G SG GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG
Sbjct: 28 GMSGLNAGPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLH 86
Query: 93 QGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNK 152
+GC F+ Y + A +A ALH Q TLPG PIQV+ A E + KLFVG L K
Sbjct: 87 KGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGK 143
Query: 153 QATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTM 209
Q E++V +F P+G +E+ ++R S+GC FVK+ + A AAI +L+G TM
Sbjct: 144 QQGEEDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTM 200
>gi|32364092|gb|AAP80197.1| FCA-like protein [Triticum aestivum]
Length = 430
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 117/287 (40%), Positives = 145/287 (50%), Gaps = 35/287 (12%)
Query: 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGP 244
CGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRPRPG+SR GP FGGPG
Sbjct: 1 CGFVKFSSKEPALAAMNSLSGTYMMRGCEQPLIVRFADPKRPRPGESRGGPAFGGPGVSS 60
Query: 245 RFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMP 303
R RP N + I +P ++W P SP +M P FG+ G +G P
Sbjct: 61 RSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ---FNNFGSD--NSMGLMGGP 115
Query: 304 LNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLGQ-------QISPLQKPLQ 352
+ P + + S L P S PSL Q QISPLQKP
Sbjct: 116 VTSAADNVTFRPQMFHGNGS--LSSQTAVPASSHMGINPSLSQGHHLGGPQISPLQKPTG 173
Query: 353 SPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQG 412
PQ+ P+QL + Q L Q G SF Q +P+ L G LP SQP
Sbjct: 174 QPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIPTMQL---PGQLPVSQPLA 221
Query: 413 QQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLHQPYQQ 458
QQ AS+ AL P + QS+ + QQQLP+ V Q L QP QQ
Sbjct: 222 QQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQQPVQQ 265
>gi|344284431|ref|XP_003413971.1| PREDICTED: LOW QUALITY PROTEIN: CUGBP Elav-like family member
6-like [Loxodonta africana]
Length = 499
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 110/212 (51%), Gaps = 19/212 (8%)
Query: 34 GFSGRG-GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQ 92
G SG GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG
Sbjct: 28 GLSGLNPGPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLH 86
Query: 93 QGCCFIKYATSEEADRAIRALHNQHTLPG----GVGPIQVRYADGERERLGAV------- 141
+GC F+ Y + A +A ALH Q TLPG G + R V
Sbjct: 87 KGCAFLTYCARDSALKAQSALHEQKTLPGPLPREAGTTSFNFTLASRIHQKRVRPNFYPT 146
Query: 142 ------EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDM 195
+ KLFVG L KQ E++V +F P+G +E+ ++R S+GC FVK+ +
Sbjct: 147 FWDSEEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGE 206
Query: 196 ALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
A AAI L+G TM G L V+ AD R R
Sbjct: 207 AQAAIQGLHGSRTMAGASSSLVVKLADTDRER 238
>gi|83273948|ref|XP_729621.1| ribonucleoprotein [Plasmodium yoelii yoelii 17XNL]
gi|23487965|gb|EAA21186.1| ribonucleoprotein homolog F21B7.26 - Arabidopsis thaliana-related
[Plasmodium yoelii yoelii]
Length = 507
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 103/180 (57%), Gaps = 7/180 (3%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
KLFV S+PK E+DI+ +FEE+G +V IKDKK + F++ + A +AI
Sbjct: 78 VKLFVSSIPKNLTEDDIKLIFEEYGATKDVVFIKDKKPNANRANVFVRMESIYFAQKAIE 137
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEY-------KLFVGSLNKQATEKEVEEIFS 164
LH + + +GP+ V++A GE E+ G KLFVGSL K T+ ++ IF+
Sbjct: 138 DLHGKKIICESLGPLIVKFAIGELEKYGINMNNANENEAKLFVGSLPKDITDDQIRNIFN 197
Query: 165 PYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224
YG V++VY+M++ S+ C FV Y +++ + A+ LNG + ++P+ VRFA K
Sbjct: 198 RYGNVKEVYIMKNSNGVSKRCAFVNYDYKEQGIFAVQNLNGKIAIENAEKPIEVRFAQSK 257
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A +F+ +P + D+ F GN+I + +K TG+ +G F+ Y + A A++
Sbjct: 398 ANIFIFHIPNEWIQNDLLAAFSPFGNIISAYIATEKDTGRNRGFAFVSYDNVDSAINAVK 457
Query: 112 ALH 114
++
Sbjct: 458 YMN 460
>gi|32364110|gb|AAP80206.1| FCA-like protein [Triticum aestivum]
Length = 435
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 118/291 (40%), Positives = 147/291 (50%), Gaps = 43/291 (14%)
Query: 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGP 244
CGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRPRPG+SR GP FGGPG
Sbjct: 1 CGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRPRPGESRGGPAFGGPGVSS 60
Query: 245 RFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMP 303
R RP N + I +P ++W P SP +M P FG+ D M
Sbjct: 61 RSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ---FNNFGS-------DNSMG 110
Query: 304 LNPGGPADVPLPGLA----VSSTSSALQQNFCQPESQ----APSLGQ-------QISPLQ 348
L GGP + + + + +L P S PSL Q QISPLQ
Sbjct: 111 LM-GGPVTSAVDNVTFRPQMFHGNGSLSSQTAVPTSSHMGINPSLSQGHHLGGPQISPLQ 169
Query: 349 KPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPAS 408
KP PQ+ P+QL + Q L Q G SF Q +P+ L G LP S
Sbjct: 170 KPTGQPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIPTMQL---PGQLPVS 217
Query: 409 QPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLHQPYQQ 458
QP QQ AS+ AL P + QS+ + QQQLP+ V Q L QP QQ
Sbjct: 218 QPLTQQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQQPVQQ 265
>gi|32364094|gb|AAP80198.1| FCA-like protein [Triticum aestivum]
Length = 427
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 117/287 (40%), Positives = 145/287 (50%), Gaps = 35/287 (12%)
Query: 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGP 244
CGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRPRPG+SR GP FGGPG
Sbjct: 1 CGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRPRPGESRGGPAFGGPGVSS 60
Query: 245 RFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMP 303
R RP N + I +P ++W P SP +M P FG+ G +G P
Sbjct: 61 RSDAALVVRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ---FNNFGSD--NSMGLMGGP 115
Query: 304 LNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLGQ-------QISPLQKPLQ 352
+ P + + S L P S PSL Q QISPLQKP
Sbjct: 116 VTSAADNVTFRPRMFHGNGS--LSSQTAVPTSSHMGINPSLSQGHHLGGPQISPLQKPTG 173
Query: 353 SPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQG 412
PQ+ P+QL + Q L Q G SF Q +P+ L G LP SQP
Sbjct: 174 QPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIPTMQL---PGQLPVSQPLT 221
Query: 413 QQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLHQPYQQ 458
QQ AS+ AL P + QS+ + QQQLP+ V Q L QP QQ
Sbjct: 222 QQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQQPVQQ 265
>gi|68069003|ref|XP_676412.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56496097|emb|CAH95360.1| conserved hypothetical protein [Plasmodium berghei]
Length = 506
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 103/180 (57%), Gaps = 7/180 (3%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
KLFV S+PK E+DI+ +FEE+G +V IKDKK + F++ + A +AI
Sbjct: 78 VKLFVSSIPKNLTEDDIKLIFEEYGATKDVVFIKDKKPNANRANVFVRMESIYFAQKAIE 137
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEY-------KLFVGSLNKQATEKEVEEIFS 164
LH + + +GP+ V++A GE E+ G KLFVGSL K T+ ++ IF+
Sbjct: 138 DLHGKKIICESLGPLIVKFAIGELEKYGINMNNANENEAKLFVGSLPKDITDDQIRNIFN 197
Query: 165 PYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224
YG V++VY+M++ S+ C FV Y +++ + A+ LNG + ++P+ VRFA K
Sbjct: 198 RYGNVKEVYIMKNSNGVSKRCAFVNYDYKEQGIFAVQNLNGKIAIENAEKPIEVRFAQSK 257
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVGS+PK ++ IR +F +GNV EV ++K+ G + C F+ Y E+ A++
Sbjct: 177 KLFVGSLPKDITDDQIRNIFNRYGNVKEVYIMKN-SNGVSKRCAFVNYDYKEQGIFAVQN 235
Query: 113 LHNQHTLPGGVGPIQVRYADG-----ERERLGAV 141
L+ + + PI+VR+A ER+ L V
Sbjct: 236 LNGKIAIENAEKPIEVRFAQSKNQLQERQLLNRV 269
Score = 41.2 bits (95), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A +F+ +P + D+ F GN+I + +K TG+ +G F+ Y + A A++
Sbjct: 397 ANIFIFHIPNEWIQNDLLAAFSPFGNIISAYIATEKDTGRNRGFAFVSYDNVDSAINAVK 456
Query: 112 ALH 114
++
Sbjct: 457 YMN 459
>gi|66825827|ref|XP_646268.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|60474730|gb|EAL72667.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 368
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 111/175 (63%), Gaps = 5/175 (2%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
+FVG +P + EE + +F + GN++++ +IKDK+T +GC FI ++T EEAD A+
Sbjct: 20 VFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKEEADNALNTT 79
Query: 114 HNQHTLPGGVG-PIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
+ T + P+QV+Y+D E E++ E KLF+G L + E ++ +F YG +ED+
Sbjct: 80 NESGTFLENMNKPLQVKYSDNEIEKM---ERKLFIGMLG-TSDEDQIRILFGNYGIIEDL 135
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R++ + +G GF+KYS RD + A+ ++G +T+ G + P+ V+FAD +R +
Sbjct: 136 NIVREKDGKPKGYGFIKYSTRDESENALREIDGKHTLPGSNLPIIVKFADTERQK 190
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 50/83 (60%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAIN 201
+ +FVG + E+ V +IF+ +G + D+ +++D+ S+GC F+ +S ++ A A+N
Sbjct: 18 FTVFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKEEADNALN 77
Query: 202 ALN--GIYTMRGCDQPLTVRFAD 222
N G + + ++PL V+++D
Sbjct: 78 TTNESGTF-LENMNKPLQVKYSD 99
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
LF+ +P T +E+++ LF +GNVI + DK T Q + F+ Y ++ A AI+ L
Sbjct: 289 LFIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSKCFGFVSYDNTQSAIAAIQEL 348
Query: 114 H 114
+
Sbjct: 349 N 349
Score = 40.0 bits (92), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGC-GFVKYSHRDMALAAINAL 203
LF+ L ++E++++F+PYG V + D+ Q C GFV Y + A+AAI L
Sbjct: 289 LFIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSKCFGFVSYDNTQSAIAAIQEL 348
Query: 204 NG 205
NG
Sbjct: 349 NG 350
>gi|345485141|ref|XP_001605146.2| PREDICTED: CUGBP Elav-like family member 2 [Nasonia vitripennis]
Length = 733
Score = 136 bits (343), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 108/189 (57%), Gaps = 13/189 (6%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC-FIK 99
P PD + K+FVG VPK E D+R +FEE G V ++ +++DK TG +GCC +
Sbjct: 196 PDPDNI------KMFVGQVPKDLDENDLRTIFEEFGRVHQINVLRDKYTGSSKGCCAAMD 249
Query: 100 YATSEEAD-RAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKE 158
Y+ D + RA + T + PIQ++ AD E KLFVG L+K+ TE +
Sbjct: 250 YSRRLALDTKRARAPESVRTFNQKLHPIQMKPADSENRS----HRKLFVGMLSKKFTEND 305
Query: 159 VEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218
V +F YG +E+ ++R E QS+GC FV ++ + A+ AI AL+ TM GC PL V
Sbjct: 306 VRNMFDVYGEIEECSVLR-ENGQSKGCAFVTFASKQSAVLAIKALHHSQTMEGCSSPLVV 364
Query: 219 RFADPKRPR 227
+FAD ++ +
Sbjct: 365 KFADTQKDK 373
Score = 43.1 bits (100), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEE 105
++G LF+ +P T + D+ +F GNV+ + DK+T + + F+ Y
Sbjct: 643 IEGPEGCNLFIYHLPHTYTDTDLIAMFMPFGNVLSAKVFIDKETKKSKCFGFVSYDKPSS 702
Query: 106 ADRAIRALH 114
A +AI+ +H
Sbjct: 703 AQKAIQMMH 711
>gi|32364081|gb|AAP80192.1| FCA-like protein [Triticum aestivum]
Length = 423
Score = 136 bits (343), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 118/292 (40%), Positives = 148/292 (50%), Gaps = 45/292 (15%)
Query: 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGP 244
CGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRPRPG+SR GP FGGPG
Sbjct: 1 CGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRPRPGESRGGPAFGGPGVSS 60
Query: 245 RFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMP 303
R RP N + I +P ++W P SP +M P F N P S L
Sbjct: 61 RSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAP------HQFNNFGPDNSMGLM-- 112
Query: 304 LNPGGPADVPLPGLA----VSSTSSALQQNFCQPESQ----APSLGQ-------QISPLQ 348
GGPA + + + +L P S PSL Q QISPLQ
Sbjct: 113 ---GGPATSTADNVTFRPQMFHGNGSLSSQTAVPTSSHMGINPSLSQGHHLGGPQISPLQ 169
Query: 349 KPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPAS 408
KP PQ+ P+QL + Q L Q G SF Q +P+ L G LP S
Sbjct: 170 KPTGPPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIPTMQL---PGQLPVS 217
Query: 409 QPQGQQIASS-STALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLHQPYQQ 458
QP QQ AS+ + P+ ++ P ++PG QQQLP+ V Q L QP QQ
Sbjct: 218 QPLTQQNASAGALQAPSAVHSNPM-QAVPG---QQQLPSNVTPQMLQQPVQQ 265
>gi|326426729|gb|EGD72299.1| napor protein short isoform [Salpingoeca sp. ATCC 50818]
Length = 353
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 103/170 (60%), Gaps = 3/170 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +PK+ EE + L + +G + ++ ++K+K TG+ +GC F+ + + + A AI
Sbjct: 24 KLFVGQLPKSYGEEQLTALLQPYGAIHDMMILKNKMTGESRGCAFVTFCSRQSALSAIAD 83
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH + TLP P+QV+ AD E+ + KLFVG ++K TE ++E +F P+G +E V
Sbjct: 84 LHEKRTLPTMANPMQVKIADSEQR---GDDRKLFVGMISKTCTEADLEAMFRPFGEIESV 140
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ QS+GC FVKY++ A AI L+ TM GC P+ V+ AD
Sbjct: 141 NVLIGPEGQSKGCAFVKYTNAGSANQAIAKLHNSTTMEGCRAPMVVKIAD 190
Score = 39.7 bits (91), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
+ LF+ +P+ + + F GNVI + DK TGQ + F+ Y + A AI+
Sbjct: 270 SNLFIYHLPQELNDHSLAATFMSFGNVISSKVFVDKYTGQSKCFGFVSYDNPQSAQAAIQ 329
Query: 112 ALH 114
A++
Sbjct: 330 AMN 332
>gi|32364104|gb|AAP80203.1| FCA-like protein [Triticum aestivum]
Length = 438
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 117/287 (40%), Positives = 145/287 (50%), Gaps = 35/287 (12%)
Query: 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGP 244
CGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRPRPG+SR GP FGGPG
Sbjct: 1 CGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRPRPGESRGGPAFGGPGVSS 60
Query: 245 RFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMP 303
R RP N + I +P ++W P SP +M P FG+ G +G P
Sbjct: 61 RSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ---FNNFGSDN--SMGLMGGP 115
Query: 304 LNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLGQ-------QISPLQKPLQ 352
+ P + + S L P S PSL Q QISPLQKP
Sbjct: 116 VTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLSQGHHLGGPQISPLQKPTG 173
Query: 353 SPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQG 412
PQ+ P+QL + Q L Q G SF Q +P+ L G LP SQP
Sbjct: 174 QPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIPTMQL---PGQLPVSQPLT 221
Query: 413 QQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLHQPYQQ 458
QQ AS+ AL P + QS+ + QQQLP+ V Q L QP QQ
Sbjct: 222 QQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQQPVQQ 265
>gi|32364100|gb|AAP80201.1| FCA-like protein [Triticum aestivum]
Length = 435
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 117/287 (40%), Positives = 145/287 (50%), Gaps = 35/287 (12%)
Query: 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGP 244
CGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRPRPG+SR GP FGGPG
Sbjct: 1 CGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRPRPGESRGGPAFGGPGVSS 60
Query: 245 RFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMP 303
R RP N + I +P ++W P SP +M P FG+ G +G P
Sbjct: 61 RSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ---FNNFGSD--NSMGLMGGP 115
Query: 304 LNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLGQ-------QISPLQKPLQ 352
+ P + + S L P S PSL Q QISPLQKP
Sbjct: 116 VTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLSQGHHLGGPQISPLQKPTG 173
Query: 353 SPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQG 412
PQ+ P+QL + Q L Q G SF Q +P+ L G LP SQP
Sbjct: 174 QPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIPTMQL---PGQLPVSQPLT 221
Query: 413 QQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLHQPYQQ 458
QQ AS+ AL P + QS+ + QQQLP+ V Q L QP QQ
Sbjct: 222 QQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQQPVQQ 265
>gi|32364087|gb|AAP80195.1| FCA-like protein [Triticum aestivum]
Length = 443
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 117/287 (40%), Positives = 145/287 (50%), Gaps = 35/287 (12%)
Query: 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGP 244
CGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRPRPG+SR GP FGGPG
Sbjct: 1 CGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRPRPGESRGGPAFGGPGVSS 60
Query: 245 RFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMP 303
R RP N + I +P ++W P SP +M P FG+ G +G P
Sbjct: 61 RSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ---FNNFGSD--NSMGLMGGP 115
Query: 304 LNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLGQ-------QISPLQKPLQ 352
+ P + + S L P S PSL Q QISPLQKP
Sbjct: 116 VTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLSQGHHLGGPQISPLQKPTG 173
Query: 353 SPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQG 412
PQ+ P+QL + Q L Q G SF Q +P+ L G LP SQP
Sbjct: 174 QPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIPTMQL---PGQLPVSQPLT 221
Query: 413 QQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLHQPYQQ 458
QQ AS+ AL P + QS+ + QQQLP+ V Q L QP QQ
Sbjct: 222 QQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQQPVQQ 265
>gi|32364096|gb|AAP80199.1| FCA-like protein [Triticum aestivum]
Length = 441
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 117/287 (40%), Positives = 145/287 (50%), Gaps = 35/287 (12%)
Query: 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGP 244
CGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRPRPG+SR GP FGGPG
Sbjct: 1 CGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRPRPGESRGGPAFGGPGVSS 60
Query: 245 RFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMP 303
R RP N + I +P ++W P SP +M P FG+ G +G P
Sbjct: 61 RSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ---FNNFGSDN--SMGLMGGP 115
Query: 304 LNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLGQ-------QISPLQKPLQ 352
+ P + + S L P S PSL Q QISPLQKP
Sbjct: 116 VTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLSQGHHLGGPQISPLQKPTG 173
Query: 353 SPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQG 412
PQ+ P+QL + Q L Q G SF Q +P+ L G LP SQP
Sbjct: 174 QPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIPTMQL---PGQLPVSQPLT 221
Query: 413 QQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLHQPYQQ 458
QQ AS+ AL P + QS+ + QQQLP+ V Q L QP QQ
Sbjct: 222 QQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQQPVQQ 265
>gi|32364072|gb|AAP80188.1| FCA-like protein [Triticum aestivum]
Length = 441
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 117/287 (40%), Positives = 145/287 (50%), Gaps = 35/287 (12%)
Query: 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGP 244
CGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRPRPG+SR GP FGGPG
Sbjct: 1 CGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRPRPGESRGGPAFGGPGVSS 60
Query: 245 RFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMP 303
R RP N + I +P ++W P SP +M P FG+ G +G P
Sbjct: 61 RSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ---FNNFGSD--NSMGLMGGP 115
Query: 304 LNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLGQ-------QISPLQKPLQ 352
+ P + + S L P S PSL Q QISPLQKP
Sbjct: 116 VTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLSQGHHLGGPQISPLQKPTG 173
Query: 353 SPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQG 412
PQ+ P+QL + Q L Q G SF Q +P+ L G LP SQP
Sbjct: 174 QPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIPTMQL---PGQLPVSQPLT 221
Query: 413 QQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLHQPYQQ 458
QQ AS+ AL P + QS+ + QQQLP+ V Q L QP QQ
Sbjct: 222 QQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQQPVQQ 265
>gi|32364121|gb|AAP80211.1| FCA-like protein [Triticum aestivum]
Length = 444
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 118/292 (40%), Positives = 148/292 (50%), Gaps = 45/292 (15%)
Query: 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGP 244
CGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRPRPG+SR GP FGGPG
Sbjct: 1 CGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRPRPGESRGGPAFGGPGVSS 60
Query: 245 RFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMP 303
R RP N + I +P ++W P SP +M P F N P S L
Sbjct: 61 RSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAP------HQFNNFGPDNSMGLM-- 112
Query: 304 LNPGGPADVPLPGLA----VSSTSSALQQNFCQPESQ----APSLGQ-------QISPLQ 348
GGPA + + + +L P S PSL Q QISPLQ
Sbjct: 113 ---GGPATSTADNVTFRPQMFHGNGSLSSQTAVPTSSHMGINPSLSQGHHLGGPQISPLQ 169
Query: 349 KPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPAS 408
KP PQ+ P+QL + Q L Q G SF Q +P+ L G LP S
Sbjct: 170 KPTGPPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIPTMQL---PGQLPVS 217
Query: 409 QPQGQQIASS-STALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLHQPYQQ 458
QP QQ AS+ + P+ ++ P ++PG QQQLP+ V Q L QP QQ
Sbjct: 218 QPLTQQNASAGALQAPSAVHSNPM-QAVPG---QQQLPSNVTPQMLQQPVQQ 265
>gi|32364106|gb|AAP80204.1| FCA-like protein [Triticum aestivum]
Length = 424
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 116/287 (40%), Positives = 145/287 (50%), Gaps = 35/287 (12%)
Query: 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGP 244
CGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRPRPG+SR GP FGGPG
Sbjct: 1 CGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRPRPGESRGGPAFGGPGVSS 60
Query: 245 RFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMP 303
R RP N + I +P ++W P SP +M P FG+ G +G P
Sbjct: 61 RSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ---FNDFGSD--NSMGLMGGP 115
Query: 304 LNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLGQ-------QISPLQKPLQ 352
+ P + + S L P S PSL Q QISPLQKP
Sbjct: 116 VTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLSQGHHLGGPQISPLQKPTG 173
Query: 353 SPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQG 412
PQ+ P+QL + Q L Q G SF Q +P+ L G LP SQP
Sbjct: 174 QPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIPTMQL---PGQLPVSQPLT 221
Query: 413 QQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLHQPYQQ 458
QQ AS+ AL P ++ S+ + QQQLP+ V Q L QP QQ
Sbjct: 222 QQNASAG-ALRAPSAVR--SNPMQAVPGQQQLPSNVTPQMLQQPVQQ 265
>gi|32364115|gb|AAP80208.1| FCA-like protein [Triticum aestivum]
Length = 443
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 117/287 (40%), Positives = 144/287 (50%), Gaps = 35/287 (12%)
Query: 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGP 244
CGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRPRPG+SR GP FGGPG
Sbjct: 1 CGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRPRPGESRGGPAFGGPGVSS 60
Query: 245 RFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMP 303
R RP N + I +P ++W P SP M P FG+ G +G P
Sbjct: 61 RSDAALVIRPTANLDEQIGRHVPPDSWRPSSPSPMAPHQ---FNNFGSDN--SMGLMGGP 115
Query: 304 LNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLGQ-------QISPLQKPLQ 352
+ P + + S L P S PSL Q QISPLQKP
Sbjct: 116 VTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLSQGHHLGGPQISPLQKPTG 173
Query: 353 SPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQG 412
PQ+ P+QL + Q L Q G SF Q +P+ L G LP SQP
Sbjct: 174 QPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIPTMQL---PGQLPVSQPLT 221
Query: 413 QQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLHQPYQQ 458
QQ AS+ AL P + QS+ + QQQLP+ V Q L QP QQ
Sbjct: 222 QQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQQPVQQ 265
>gi|32364117|gb|AAP80209.1| FCA-like protein [Triticum aestivum]
Length = 429
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 117/292 (40%), Positives = 148/292 (50%), Gaps = 45/292 (15%)
Query: 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGP 244
CGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRPRPG+SR GP FGGPG
Sbjct: 1 CGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRPRPGESRGGPAFGGPGVSS 60
Query: 245 RFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMP 303
R RP N + I +P ++W P SP +M P F N P S L
Sbjct: 61 RSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAP------HQFNNFGPDNSMGLM-- 112
Query: 304 LNPGGPADVPLPGLA----VSSTSSALQQNFCQPESQ----APSLGQ-------QISPLQ 348
GGPA + + + +L P S PSL Q QISPLQ
Sbjct: 113 ---GGPATSTADNVTFRPQMFHGNGSLSSQTAVPTSSHMGINPSLSQGHHLGGPQISPLQ 169
Query: 349 KPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPAS 408
KP PQ+ P+QL + Q L Q G SF Q +P+ L G LP S
Sbjct: 170 KPTGPPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIPTMQL---PGQLPVS 217
Query: 409 QPQGQQIASS-STALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLHQPYQQ 458
QP QQ A++ + P+ ++ P ++PG QQQLP+ V Q L QP QQ
Sbjct: 218 QPLTQQNATAGALQAPSAVHSNPM-QAVPG---QQQLPSNVTPQMLQQPVQQ 265
>gi|209879588|ref|XP_002141234.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
gi|209556840|gb|EEA06885.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
Length = 517
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 103/178 (57%), Gaps = 10/178 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
KLFV VPK R ED+ +F ++G V+E +I+D + +GC F+++AT EA AI
Sbjct: 199 VKLFVNRVPKWMRNEDLMKIFSKYGVVVECNIIRD--SNGPKGCAFVRFATIVEAQNAIL 256
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG--------AVEYKLFVGSLNKQATEKEVEEIF 163
+H + L GPIQV+YADGE ERLG K+FVG L K TE E+ +F
Sbjct: 257 CIHGKTVLNEEAGPIQVKYADGEIERLGLSPDVQPCGESVKVFVGCLPKTCTEAELLTLF 316
Query: 164 SPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221
+G V++V+++RD+ +QS+ FV + R MA AI L+ Y + +P+ VR A
Sbjct: 317 RRFGHVDEVHIIRDDNRQSKCSAFVTFPKRYMAENAIVFLDKKYILDNGKRPIEVRLA 374
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 38 RGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGC-C 96
R G SPD+ K+FVG +PKT E ++ LF G+V EV +I+D +Q C
Sbjct: 282 RLGLSPDVQPCGESVKVFVGCLPKTCTEAELLTLFRRFGHVDEVHIIRDD--NRQSKCSA 339
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYA 131
F+ + A+ AI L ++ L G PI+VR A
Sbjct: 340 FVTFPKRYMAENAIVFLDKKYILDNGKRPIEVRLA 374
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINAL 203
KLFV + K +++ +IFS YG V + ++RD +GC FV+++ A AI +
Sbjct: 200 KLFVNRVPKWMRNEDLMKIFSKYGVVVECNIIRDS-NGPKGCAFVRFATIVEAQNAILCI 258
Query: 204 NGIYTMRGCDQPLTVRFADPKRPRPG 229
+G + P+ V++AD + R G
Sbjct: 259 HGKTVLNEEAGPIQVKYADGEIERLG 284
>gi|32364128|gb|AAP80213.1| FCA-like protein [Triticum aestivum]
Length = 420
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 117/287 (40%), Positives = 145/287 (50%), Gaps = 35/287 (12%)
Query: 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGP 244
CGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRPRPG+SR GP FGGPG
Sbjct: 1 CGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRPRPGESRGGPAFGGPGVSS 60
Query: 245 RFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMP 303
R RP N + I +P ++W P SP +M P FG+ G +G P
Sbjct: 61 RSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ---FNNFGSDN--SMGLMGGP 115
Query: 304 LNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLGQ-------QISPLQKPLQ 352
+ P + + S L P S PSL Q QISPLQKP
Sbjct: 116 VTSAADNVTFRPQMFHGNGS--LSSQTAAPTSSHMGINPSLSQGHHLGGPQISPLQKPTG 173
Query: 353 SPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQG 412
PQ+ P+QL + Q L Q G SF Q +P+ L G LP SQP
Sbjct: 174 PPQNF-PVQLQ--------NAQQGQLHASQPLGPGSFGQNIPTMQL---PGQLPVSQPLT 221
Query: 413 QQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLHQPYQQ 458
QQ AS+ AL P + QS+ + QQQLP+ V Q L QP QQ
Sbjct: 222 QQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQQPVQQ 265
>gi|32364077|gb|AAP80190.1| FCA-like protein [Triticum aestivum]
Length = 441
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 117/287 (40%), Positives = 144/287 (50%), Gaps = 35/287 (12%)
Query: 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGP 244
CGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRPRPG+SR GP FGGPG
Sbjct: 1 CGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRPRPGESRGGPAFGGPGVSS 60
Query: 245 RFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMP 303
R RP N + I +P ++W P SP +M P FG+ G +G P
Sbjct: 61 RSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ---FNNFGSD--NSMGLMGGP 115
Query: 304 LNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLGQ-------QISPLQKPLQ 352
+ P + + S L P S PSL Q QISPLQKP
Sbjct: 116 VTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLSQGHHLGGPQISPLQKPTG 173
Query: 353 SPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQG 412
PQ+ P+QL Q L Q G SF Q +P+ L G LP SQP
Sbjct: 174 QPQNF-PVQLQ--------SAQQGQLHASQSLGPGSFGQNIPTMQL---PGQLPVSQPLT 221
Query: 413 QQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLHQPYQQ 458
QQ AS+ AL P + QS+ + QQQLP+ V Q L QP QQ
Sbjct: 222 QQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQQPVQQ 265
>gi|198431689|ref|XP_002121627.1| PREDICTED: similar to CUG triplet repeat, RNA binding protein 2
[Ciona intestinalis]
Length = 498
Score = 135 bits (340), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 109/187 (58%), Gaps = 9/187 (4%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
P PD + K+F+G +PKT E ++R E +G + ++ ++++K + +GCCF+ +
Sbjct: 15 PDPDAI------KMFIGQIPKTWVESEVREFLEGYGPIYQLNILREKGSVMSKGCCFVTF 68
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVE 160
T + A A LHN TLPG +Q++ AD E + + + KLF+G ++K+ TE+++
Sbjct: 69 YTRKAALAAQNELHNMKTLPGMHHCVQMKPADSENK---SEDRKLFIGMISKKMTEQDLR 125
Query: 161 EIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220
++F P+G +E+ ++ + S+GC FV YS R A AI ++ TM GC P+ V+
Sbjct: 126 QLFCPFGNIEECRILMNPDGVSKGCAFVTYSKRVSAQNAIRNMHQSTTMEGCSAPIVVKI 185
Query: 221 ADPKRPR 227
AD + +
Sbjct: 186 ADSPKDK 192
>gi|32364070|gb|AAP80187.1| FCA-like protein [Triticum aestivum]
Length = 444
Score = 135 bits (339), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 116/287 (40%), Positives = 145/287 (50%), Gaps = 35/287 (12%)
Query: 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGP 244
CGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRPRPG+SR GP FGGPG
Sbjct: 1 CGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRPRPGESRGGPAFGGPGVSS 60
Query: 245 RFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMP 303
R RP N + I +P ++W P SP +M P FG+ G +G P
Sbjct: 61 RSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ---FNNFGSDN--SMGLMGGP 115
Query: 304 LNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLGQ-------QISPLQKPLQ 352
+ P + + S L P S PSL Q QISPLQKP
Sbjct: 116 VTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLSQGHHLGGPQISPLQKPTG 173
Query: 353 SPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQG 412
PQ+ P+QL + Q L Q G SF Q +P+ L G LP SQP
Sbjct: 174 PPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIPTMQL---PGQLPVSQPLT 221
Query: 413 QQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLHQPYQQ 458
QQ AS+ AL P ++ S+ + QQQLP+ V Q L QP QQ
Sbjct: 222 QQNASAG-ALQAPSAVR--SNPMQAVPGQQQLPSNVTPQMLQQPVQQ 265
>gi|32364067|gb|AAP80186.1| FCA-like protein [Triticum aestivum]
Length = 440
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 116/288 (40%), Positives = 147/288 (51%), Gaps = 37/288 (12%)
Query: 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGP 244
CGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRPRPG+SR GP FGGPG
Sbjct: 1 CGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRPRPGESRGGPAFGGPGVSS 60
Query: 245 RFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMP 303
R RP N + I +P ++W P SP +M P FG+ G +G P
Sbjct: 61 RSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ---FNNFGSD--NSMGLMGGP 115
Query: 304 LNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLGQ-------QISPLQKPLQ 352
+ P + + S L P S PSL Q QISPLQKP
Sbjct: 116 VTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLSQGHHLGGPQISPLQKPTG 173
Query: 353 SPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQG 412
PQ+ P+QL + Q L Q G SF Q +P+ L G LP SQP
Sbjct: 174 QPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIPTMQL---PGQLPVSQPLT 221
Query: 413 QQIASS-STALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLHQPYQQ 458
QQ AS+ + P+ ++ P ++PG QQQLP+ V Q L QP QQ
Sbjct: 222 QQNASAGALQAPSAVHSNPM-QAVPG---QQQLPSNVTPQMLQQPVQQ 265
>gi|403255513|ref|XP_003920470.1| PREDICTED: CUGBP Elav-like family member 1 [Saimiri boliviensis
boliviensis]
Length = 597
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 101/160 (63%), Gaps = 4/160 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 183 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 242
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
ALHN LPG PIQ++ AD E+ + + KLF+G ++K+ TE ++ +FS +G++E
Sbjct: 243 NALHNMKVLPGMHHPIQMKPADSEKNNVE--DRKLFIGMISKKCTENDIRVMFSSFGQIE 300
Query: 171 DVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMR 210
+ ++R SRGC FV ++ R MA AI A++ TM
Sbjct: 301 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTME 340
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 183 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 242
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ D +
Sbjct: 243 NALHNMKVLPGMHHPIQMKPADSEKNNVEDRK 274
>gi|32364113|gb|AAP80207.1| FCA-like protein [Triticum aestivum]
Length = 433
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 117/287 (40%), Positives = 144/287 (50%), Gaps = 35/287 (12%)
Query: 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGP 244
CGFVK S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRPRPG+SR GP FGGPG
Sbjct: 1 CGFVKSSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRPRPGESRGGPAFGGPGVSS 60
Query: 245 RFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMP 303
R RP N + I +P ++W P SP +M P FG+ G +G P
Sbjct: 61 RSDAALVIRPIANLDEQIGRHMPPDSWRPSSPSSMAPHQ---FNNFGSD--NSMGLMGGP 115
Query: 304 LNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLGQ-------QISPLQKPLQ 352
+ P + + S L P S PSL Q QISPLQKP
Sbjct: 116 VTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLSQGHHLGGPQISPLQKPTG 173
Query: 353 SPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQG 412
PQ+ P+QL + Q L Q G SF Q +P+ L G LP SQP
Sbjct: 174 QPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIPTMQL---PGQLPVSQPLT 221
Query: 413 QQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLHQPYQQ 458
QQ AS+ AL P + QS+ + QQQLP+ V Q L QP QQ
Sbjct: 222 QQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQQPVQQ 265
>gi|32364085|gb|AAP80194.1| FCA-like protein [Triticum aestivum]
Length = 426
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 116/287 (40%), Positives = 144/287 (50%), Gaps = 35/287 (12%)
Query: 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGP 244
CG VK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRPRPG+SR GP FGGPG
Sbjct: 1 CGLVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRPRPGESRGGPAFGGPGVSS 60
Query: 245 RFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMP 303
R RP N + I +P ++W P SP +M P FG+ G +G P
Sbjct: 61 RSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ---FNNFGSD--NSMGLMGGP 115
Query: 304 LNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLGQ-------QISPLQKPLQ 352
+ P + + S L P S PSL Q QISPLQKP
Sbjct: 116 VTSAADNVTFRPQMFRGNGS--LSSQTAVPTSSHMGINPSLSQGHHLGGPQISPLQKPTG 173
Query: 353 SPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQG 412
PQ+ P+QL + Q L Q G SF Q +P+ L G LP SQP
Sbjct: 174 PPQNF-PVQLQ--------NAQQGQLHASQPLGPGSFGQNIPTMQL---PGQLPVSQPLT 221
Query: 413 QQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLHQPYQQ 458
QQ AS+ AL P + QS+ + QQQLP+ V Q L QP QQ
Sbjct: 222 QQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQQPVQQ 265
>gi|32364098|gb|AAP80200.1| FCA-like protein [Triticum aestivum]
Length = 441
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 116/287 (40%), Positives = 144/287 (50%), Gaps = 35/287 (12%)
Query: 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGP 244
CGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRPRPG+SR GP FGGPG
Sbjct: 1 CGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRPRPGESRGGPAFGGPGVSS 60
Query: 245 RFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMP 303
R RP N + I +P ++W P SP +M P FG+ G +G P
Sbjct: 61 RSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ---FNNFGSD--NSMGLMGGP 115
Query: 304 LNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLGQ-------QISPLQKPLQ 352
+ P + + S L P S PSL Q QISPLQKP
Sbjct: 116 VTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLSQGHHLGGPQISPLQKPTG 173
Query: 353 SPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQG 412
PQ+ P+QL + Q L Q G S Q +P+ L G LP SQP
Sbjct: 174 QPQNF-PVQLQ--------NAQQGQLHASQSLGPGSXGQNIPTMQL---PGQLPVSQPLT 221
Query: 413 QQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLHQPYQQ 458
QQ AS+ AL P + QS+ + QQQLP+ V Q L QP QQ
Sbjct: 222 QQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQQPVQQ 265
>gi|294877844|ref|XP_002768155.1| ribonucleoprotein, putative [Perkinsus marinus ATCC 50983]
gi|239870352|gb|EER00873.1| ribonucleoprotein, putative [Perkinsus marinus ATCC 50983]
Length = 391
Score = 132 bits (333), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 107/183 (58%), Gaps = 7/183 (3%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQ-GCCFIKYATSEEADRAI 110
+LFVG +P E++IR LFE +G V EV LI+ K+ G+QQ GC F+K+ EA AI
Sbjct: 9 VRLFVGKLPAAWNEQNIRDLFEAYGEVQEVGLIRPKENGKQQTGCAFVKFGAVHEAATAI 68
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVEY------KLFVGSLNKQATEKEVEEIFS 164
++L+ + G +QV++A+GE ERLG E KLFVG++ ++ E+++IF
Sbjct: 69 KSLNGTYKADDAPGFVQVQFANGEPERLGLPEDTEGYSQKLFVGNVPPSTSDDELKQIFD 128
Query: 165 PYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224
YG V + Y + + FV++S + AL AI+ALN YT G P+TV+ AD +
Sbjct: 129 EYGNVTEAYSLESKRASGNKAAFVRFSKKSDALKAIDALNDKYTFPGEPHPITVKCADTR 188
Query: 225 RPR 227
R
Sbjct: 189 EQR 191
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMR--DELKQSRGCGFVKYSHRDMALAAIN 201
+LFVG L E+ + ++F YG V++V L+R + KQ GC FVK+ A AI
Sbjct: 10 RLFVGKLPAAWNEQNIRDLFEAYGEVQEVGLIRPKENGKQQTGCAFVKFGAVHEAATAIK 69
Query: 202 ALNGIYTMRGCDQPLTVRFADPKRPRPG 229
+LNG Y + V+FA+ + R G
Sbjct: 70 SLNGTYKADDAPGFVQVQFANGEPERLG 97
>gi|32364126|gb|AAP80212.1| FCA-like protein [Triticum aestivum]
Length = 438
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 116/287 (40%), Positives = 144/287 (50%), Gaps = 35/287 (12%)
Query: 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGP 244
CGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRPRPG+SR GP FGGPG
Sbjct: 1 CGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRPRPGESRGGPAFGGPGVSS 60
Query: 245 RFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMP 303
R RP N + I +P ++W P SP +M P FG+ G +G P
Sbjct: 61 RSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAPHQ---FNNFGSDN--SMGLMGGP 115
Query: 304 LNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLGQ-------QISPLQKPLQ 352
+ P + + S L P S PSL Q QISPLQK
Sbjct: 116 VTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLSQGHHLGGPQISPLQKSTG 173
Query: 353 SPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQG 412
PQ+ P+QL + Q L Q G SF Q +P+ L G LP SQP
Sbjct: 174 PPQNF-PVQLQ--------NAQQGQLHASQPLGPGSFGQNIPTMQL---PGQLPVSQPLT 221
Query: 413 QQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLHQPYQQ 458
QQ AS+ AL P + QS+ + QQQLP+ V Q L QP QQ
Sbjct: 222 QQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQQPVQQ 265
>gi|294936191|ref|XP_002781649.1| Nuclear polyadenylated RNA-binding protein, putative [Perkinsus
marinus ATCC 50983]
gi|239892571|gb|EER13444.1| Nuclear polyadenylated RNA-binding protein, putative [Perkinsus
marinus ATCC 50983]
Length = 451
Score = 132 bits (332), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 107/183 (58%), Gaps = 7/183 (3%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQ-GCCFIKYATSEEADRAI 110
+LFVG +P T +E++IR LFE +G V EV +I+ K G+QQ GC F+K+ EA AI
Sbjct: 9 VRLFVGRLPATWQEQNIRDLFEAYGEVQEVGMIRPKDNGKQQTGCAFVKFGAVHEAATAI 68
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVEY------KLFVGSLNKQATEKEVEEIFS 164
++L+ + G IQV++A+GE ERLG E KLFVG++ T++E++ IF
Sbjct: 69 KSLNGTYKADDVCGFIQVQFANGEPERLGLPEDTEGYSQKLFVGNIPPSTTDEELKRIFD 128
Query: 165 PYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224
YG V + Y + + FV+YS + A+ AI ALN YT G P+TV+ AD +
Sbjct: 129 EYGNVTEAYGLESKRASGNKAAFVRYSKKSDAVKAIEALNEKYTFPGEPHPITVKCADTR 188
Query: 225 RPR 227
R
Sbjct: 189 EQR 191
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMR--DELKQSRGCGFVKYSHRDMALAAIN 201
+LFVG L E+ + ++F YG V++V ++R D KQ GC FVK+ A AI
Sbjct: 10 RLFVGRLPATWQEQNIRDLFEAYGEVQEVGMIRPKDNGKQQTGCAFVKFGAVHEAATAIK 69
Query: 202 ALNGIYTMRGCDQPLTVRFADPKRPRPG 229
+LNG Y + V+FA+ + R G
Sbjct: 70 SLNGTYKADDVCGFIQVQFANGEPERLG 97
>gi|410052930|ref|XP_003953367.1| PREDICTED: LOW QUALITY PROTEIN: CUGBP Elav-like family member 5
[Pan troglodytes]
Length = 484
Score = 132 bits (331), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 107/191 (56%), Gaps = 9/191 (4%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
G PD + KLFVG +P+ E+D++PLFE+ G + E A++KD TG +GC
Sbjct: 33 GGQPDGMKDLDAIKLFVGQIPRHLDEKDLKPLFEQFGRIHENAVLKDPYTGMHKGCLPAL 92
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVR---YADGERERLGAVEYKLFVGSLNKQATE 156
Y + A + A+H Q TL G ++ R A R+R KLFVG LNKQ +E
Sbjct: 93 YCARDSASKLKVAVHEQKTLSGVNRVLRCRPGWSAFRGRDR------KLFVGMLNKQQSE 146
Query: 157 KEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPL 216
++V +F P+G +++ ++R S+GC FVK+S A AAI+AL+G TM G L
Sbjct: 147 EDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 206
Query: 217 TVRFADPKRPR 227
V+FAD + R
Sbjct: 207 VVKFADTDKER 217
>gi|32364083|gb|AAP80193.1| FCA-like protein [Triticum aestivum]
Length = 444
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 116/292 (39%), Positives = 147/292 (50%), Gaps = 45/292 (15%)
Query: 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGP 244
CGFVK+S ++ ALAA+N+ +G Y MRGC+QPL VRFADPKRPRPG+SR GP FGGPG
Sbjct: 1 CGFVKFSSKEPALAAMNSPSGTYIMRGCEQPLIVRFADPKRPRPGESRGGPAFGGPGVSS 60
Query: 245 RFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMP 303
R RP N + I +P ++W P SP +M P F N P S L
Sbjct: 61 RSDAALVIRPTANLDEQIGRHMPPDSWRPSSPSSMAP------HQFNNFGPDNSMGLM-- 112
Query: 304 LNPGGPADVPLPGLA----VSSTSSALQQNFCQPESQ----APSLGQ-------QISPLQ 348
GGPA + + + +L P S PSL Q QISPLQ
Sbjct: 113 ---GGPATSTADNVTFRPQMFHGNGSLSSQTAVPTSSHMGINPSLSQGHHLGGPQISPLQ 169
Query: 349 KPLQSPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPAS 408
KP PQ+ P+QL + Q L Q G SF Q +P+ L G LP S
Sbjct: 170 KPTGPPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIPTMQL---PGQLPVS 217
Query: 409 QPQGQQIASS-STALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLHQPYQQ 458
QP QQ AS+ + P+ ++ P ++PG QQQLP+ V Q L QP Q+
Sbjct: 218 QPLTQQNASAGALQAPSAVHSNPM-QAVPG---QQQLPSNVTPQMLQQPVQR 265
>gi|410928558|ref|XP_003977667.1| PREDICTED: CUGBP Elav-like family member 3-like [Takifugu rubripes]
Length = 435
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 101/175 (57%), Gaps = 5/175 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y E A +A A
Sbjct: 8 KLFVGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG V V + E +L + + +Q+ E +V +F P+G +++
Sbjct: 68 LHEQKTLPGLVYSGVVASSSSELLKLPIT----CIFATARQSDE-DVRRLFEPFGSIDEC 122
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN+L+G TM G L V+FAD ++ R
Sbjct: 123 TVLRGPDGTSKGCAFVKFQGHAEAQAAINSLHGSRTMPGASSSLVVKFADTEKER 177
>gi|310689905|pdb|3NMR|A Chain A, Crystal Structure Of Cugbp1 Rrm12-Rna Complex
gi|310689907|pdb|3NNA|A Chain A, Crystal Structure Of Cugbp1 Rrm12-Rna Complex
Length = 175
Score = 130 bits (326), Expect = 4e-27, Method: Composition-based stats.
Identities = 73/177 (41%), Positives = 105/177 (59%), Gaps = 5/177 (2%)
Query: 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEA 106
S K FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A
Sbjct: 1 SDAIKXFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAA 60
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSP 165
A ALHN LPG PIQ + AD E+ AVE KLF+G ++K+ TE ++ FS
Sbjct: 61 LEAQNALHNXKVLPGXHHPIQXKPADSEKNN--AVEDRKLFIGXISKKCTENDIRVXFSS 118
Query: 166 YGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
+G++E+ ++R SRGC FV ++ R A AI A + T GC P V+FAD
Sbjct: 119 FGQIEECRILRGPDGLSRGCAFVTFTTRAXAQTAIKAXHQAQTXEGCSSPXVVKFAD 175
Score = 54.3 bits (129), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 5 KXFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 64
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + G P+ + AD ++ + R
Sbjct: 65 NALHNXKVLPGXHHPIQXKPADSEKNNAVEDR 96
>gi|325562875|gb|ADZ31336.1| cell size RNA recognition motif 1 [synthetic construct]
Length = 79
Score = 129 bits (324), Expect = 6e-27, Method: Composition-based stats.
Identities = 55/78 (70%), Positives = 70/78 (89%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
G D + +++ KLF+GSVP+TA E+D+RPLFEEHG+V+EVALIKD+KTG+QQGCCF+K
Sbjct: 2 GDHSDHDNRNNYVKLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVK 61
Query: 100 YATSEEADRAIRALHNQH 117
YATSEEA+RAIRALHNQ+
Sbjct: 62 YATSEEAERAIRALHNQY 79
Score = 52.0 bits (123), Expect = 0.001, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINA 202
KLF+GS+ + ATE +V +F +G V +V L++D + + +GC FVKY+ + A AI A
Sbjct: 15 KLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRA 74
Query: 203 LNGIY 207
L+ Y
Sbjct: 75 LHNQY 79
>gi|193204848|ref|NP_001122629.1| Protein ETR-1, isoform d [Caenorhabditis elegans]
gi|351063344|emb|CCD71499.1| Protein ETR-1, isoform d [Caenorhabditis elegans]
Length = 535
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 100/170 (58%), Gaps = 5/170 (2%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
PSP D + K+FVG +P+ E D R LFE++G+V +++DK T +GCCF+ +
Sbjct: 45 PSPSEPDTDAI-KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVE 160
++A A ALHN + G P+Q++ AD E E KLF+G L+K+ E+ +
Sbjct: 104 YHRKDAIEAQGALHNIKVIEGMHHPVQMKPADTENRN----ERKLFIGQLSKKHNEENLR 159
Query: 161 EIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMR 210
EIF+ +G +ED ++RD+ +SRGC FV +++R A+ A ++ TM
Sbjct: 160 EIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTME 209
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINA 202
K+FVG + +Q E + +F YG V ++RD+ Q S+GC FV + HR A+ A A
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGA 115
Query: 203 LNGIYTMRGCDQPLTVRFADPKR 225
L+ I + G P+ ++ AD +
Sbjct: 116 LHNIKVIEGMHHPVQMKPADTEN 138
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G + K EE++R +F + G++ + ++++D+ G+ +GC F+ + A A +
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQD-GKSRGCAFVTFTNRSCAVVATKE 201
Query: 113 LHNQHTLPGGVG 124
+H+ T+ G G
Sbjct: 202 MHHSQTMELGGG 213
>gi|449269404|gb|EMC80177.1| CUG-BP- and ETR-3-like factor 3, partial [Columba livia]
Length = 449
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 100/175 (57%), Gaps = 6/175 (3%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E D++PLFEE G + E+ ++KD+ TG +GC F+ Y + A +A A
Sbjct: 14 KLFVGQIPRNLEESDLKPLFEEFGRIYELTVLKDRFTGMHKGCAFLTYCARDSALKAQSA 73
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ +E +V +F P+G++E+
Sbjct: 74 LHEQKTLPGMNRPIQVKPADSEGR---GEDRKLFVGMLGKQQSEDDVRRLFEPFGQIEEC 130
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+G GF + + L+G TM G L V+FAD + R
Sbjct: 131 TILRGPDGASKG-GF--WGAGGAPHGCRHPLHGSQTMPGASSSLVVKFADTDKER 182
>gi|151936117|gb|ABS18835.1| ELAV-type RNA binding protein variant D [Caenorhabditis elegans]
Length = 327
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 100/169 (59%), Gaps = 5/169 (2%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
PSP D + K+FVG +P+ E D R LFE++G+V +++DK T +GCCF+ +
Sbjct: 45 PSPSEPDTDAI-KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVE 160
++A A ALHN + G P+Q++ AD E E KLF+G L+K+ E+ +
Sbjct: 104 YHRKDAIEAQGALHNIKVIEGMHHPVQMKPADTENRN----ERKLFIGQLSKKHNEENLR 159
Query: 161 EIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTM 209
EIF+ +G +ED ++RD+ +SRGC FV +++R A+ A ++ TM
Sbjct: 160 EIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTM 208
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINA 202
K+FVG + +Q E + +F YG V ++RD+ Q S+GC FV + HR A+ A A
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGA 115
Query: 203 LNGIYTMRGCDQPLTVRFADPK 224
L+ I + G P+ ++ AD +
Sbjct: 116 LHNIKVIEGMHHPVQMKPADTE 137
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G + K EE++R +F + G++ + ++++D+ G+ +GC F+ + A A +
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQD-GKSRGCAFVTFTNRSCAVVATKE 201
Query: 113 LHNQHTLPGGVG 124
+H+ T+ G G
Sbjct: 202 MHHSQTMELGGG 213
>gi|66362598|ref|XP_628265.1| bruno-like protein with 2 RRM domains [Cryptosporidium parvum Iowa
II]
gi|46229739|gb|EAK90557.1| bruno-like protein with 2 RRM domains [Cryptosporidium parvum Iowa
II]
Length = 690
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 102/181 (56%), Gaps = 10/181 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
KLFV VPK E++ +F ++G V+E +I+D + +GC F++++ EA AI
Sbjct: 268 VKLFVNRVPKHMTNEELLKIFNKYGLVVECNIIRD--SNGPKGCAFVRFSNIYEAQNAIL 325
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG--------AVEYKLFVGSLNKQATEKEVEEIF 163
+H + L VGPIQV+YADGE ERLG K+FVGSL K TE ++ +F
Sbjct: 326 CIHGKTVLDKEVGPIQVKYADGEIERLGLSPDVQPCGESVKVFVGSLPKNCTEDQLLLLF 385
Query: 164 SPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223
+G V++V+++RD KQS+ FV + + MA AI L+ Y +P+ VR A
Sbjct: 386 KQFGHVDEVHIIRDNNKQSKCSAFVTFPRKFMAENAIMFLDKKYIFDNSKRPIEVRLAKS 445
Query: 224 K 224
+
Sbjct: 446 R 446
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 38 RGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGC-C 96
R G SPD+ K+FVGS+PK E+ + LF++ G+V EV +I+D +Q C
Sbjct: 351 RLGLSPDVQPCGESVKVFVGSLPKNCTEDQLLLLFKQFGHVDEVHIIRD--NNKQSKCSA 408
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYA 131
F+ + A+ AI L ++ PI+VR A
Sbjct: 409 FVTFPRKFMAENAIMFLDKKYIFDNSKRPIEVRLA 443
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 135 RERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRD 194
R + G KLFV + K T +E+ +IF+ YG V + ++RD +GC FV++S+
Sbjct: 260 RSKRGYAPVKLFVNRVPKHMTNEELLKIFNKYGLVVECNIIRDS-NGPKGCAFVRFSNIY 318
Query: 195 MALAAINALNGIYTMRGCDQPLTVRFADPKRPRPG 229
A AI ++G + P+ V++AD + R G
Sbjct: 319 EAQNAILCIHGKTVLDKEVGPIQVKYADGEIERLG 353
>gi|340369729|ref|XP_003383400.1| PREDICTED: CUGBP Elav-like family member 3-A-like [Amphimedon
queenslandica]
Length = 447
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 104/175 (59%), Gaps = 2/175 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +PK EE I+ L EE G + E+ +IKDK+ + +GC F+ Y E A A +
Sbjct: 18 KLFVGQIPKEYDEEQIKALLEEFGPIHEINIIKDKEK-RSKGCAFVTYCLKESAVNAQQN 76
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH + TLP P+QV+ A + R + +LFVG L+ + ++++V +FSP+G VEDV
Sbjct: 77 LHEKRTLPAMNHPMQVKPAT-QSNRDKGEDRRLFVGQLSPEMSDEQVANLFSPFGLVEDV 135
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++RD+ S+ FV+ R+ A+ AI L+ T+ G P+ V+ AD +R +
Sbjct: 136 SILRDKDGVSKKAAFVRMGSRNEAMTAIQGLHQSCTLPGVSHPVNVKIADTEREK 190
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 52/91 (57%)
Query: 142 EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAIN 201
+ KLFVG + K+ E++++ + +G + ++ +++D+ K+S+GC FV Y ++ A+ A
Sbjct: 16 KIKLFVGQIPKEYDEEQIKALLEEFGPIHEINIIKDKEKRSKGCAFVTYCLKESAVNAQQ 75
Query: 202 ALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
L+ T+ + P+ V+ A G+ R
Sbjct: 76 NLHEKRTLPAMNHPMQVKPATQSNRDKGEDR 106
>gi|196475703|gb|ACG76412.1| trinucleotide repeat containing 4 (predicted) [Otolemur garnettii]
Length = 564
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 104/176 (59%), Gaps = 6/176 (3%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIY-TMRGCDQPLTVRFADPKRPR 227
++R S+G +K H + + +L+ + RG L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGLPLLK--HMPLQPSISPSLSVCHQEERGASSSLVVKFADTEKER 178
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 17/127 (13%)
Query: 95 CCFIKYATSEEADRAIRALHN-------QHTLPGGVGPIQVRYADGERERLGAVE----- 142
C + TS EA RA+ + Q L +GP+ ++A E
Sbjct: 419 CPCVGMKTSGEAARALAHIAGDWPWRSPQDLL--SLGPLLFQFASSHAELFLLPLLPPGP 476
Query: 143 --YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAA 199
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AA
Sbjct: 477 DGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAA 536
Query: 200 INALNGI 206
I A+NG
Sbjct: 537 IQAMNGF 543
>gi|317419091|emb|CBN81129.1| CUG-BP-and ETR-3-like factor 4 [Dicentrarchus labrax]
Length = 527
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 99/175 (56%), Gaps = 8/175 (4%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D+RPLFEE G + E+ ++KD+ TG + + + R+
Sbjct: 52 KLFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKVNLVVT-----KIFRSKTY 106
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
L HTL PIQV+ AD E + KLFVG LNKQ +E +V +F +G +E+
Sbjct: 107 LLPMHTLRTMNRPIQVKPADSESR---GEDRKLFVGMLNKQQSEDDVRRLFESFGSIEEC 163
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVKYS A AAI+AL+G TM G L V+FAD + R
Sbjct: 164 TILRGPDGNSKGCAFVKYSSHAEAQAAISALHGSQTMPGASSSLVVKFADTDKER 218
>gi|351714404|gb|EHB17323.1| CUG-BP- and ETR-3-like factor 1 [Heterocephalus glaber]
Length = 195
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 101/160 (63%), Gaps = 5/160 (3%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCC + + T + A A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCSVTFYTRKAALEAQ 76
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++++ TE ++ +FS +G++
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKN--NAVEDRKLFIGMISEKCTENDIRVMFSSFGQI 134
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTM 209
E+ ++R SRGC FV ++ R MA AI A++ TM
Sbjct: 135 EEYRILRGPDGLSRGCAFVTFTTRGMAQTAIKAMHQAQTM 174
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC V + R AL A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCSVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 108
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G + + E DIR +F G + E +++ G +GC F+ + T A AI+A
Sbjct: 109 KLFIGMISEKCTENDIRVMFSSFGQIEEYRILRGPD-GLSRGCAFVTFTTRGMAQTAIKA 167
Query: 113 LHNQHTLPGGVGPIQVR 129
+H T+ VG QV+
Sbjct: 168 MHQAQTME--VGSAQVK 182
>gi|395729854|ref|XP_002810281.2| PREDICTED: LOW QUALITY PROTEIN: CUGBP Elav-like family member 3
[Pongo abelii]
Length = 478
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 89/144 (61%), Gaps = 6/144 (4%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCG---FVKYSHR 193
++R S+GC + + HR
Sbjct: 125 TVLRGPDGTSKGCASFEILGFYHR 148
>gi|297279975|ref|XP_002801847.1| PREDICTED: CUGBP Elav-like family member 3-like, partial [Macaca
mulatta]
Length = 438
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 89/150 (59%), Gaps = 3/150 (2%)
Query: 78 VIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERER 137
+ E+ +IKDK TG +GC F+ Y + A +A ALH Q TLPG PIQV+ AD E
Sbjct: 1 IFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSESR- 59
Query: 138 LGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMAL 197
+ KLFVG L KQ T+++V ++F P+G +++ ++R S+GC FVK+ A
Sbjct: 60 --GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQ 117
Query: 198 AAINALNGIYTMRGCDQPLTVRFADPKRPR 227
AAIN L+ T+ G L V+FAD ++ R
Sbjct: 118 AAINTLHSSRTLPGASSSLVVKFADTEKER 147
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K +ED+R +FE G + E +++ G +GC F+K+ T EA AI
Sbjct: 64 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPD-GTSKGCAFVKFQTHAEAQAAINT 122
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH+ TLPG + V++AD E+ER
Sbjct: 123 LHSSRTLPGASSSLVVKFADTEKER 147
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 355 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 414
Query: 204 NGI 206
NG
Sbjct: 415 NGF 417
>gi|432862983|ref|XP_004069969.1| PREDICTED: CUGBP Elav-like family member 2-like [Oryzias latipes]
Length = 462
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 102/173 (58%), Gaps = 11/173 (6%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E +++ LFE G V ++ +++D+ Q +GCCF+
Sbjct: 41 PDPDAI------KMFVGQIPRSWTETELKELFEPFGAVYQINILRDRAQNPPQSKGCCFV 94
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TL G PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 95 TFYTRKAALEAQNALHNIKTLSGMHHPIQMKPADSEKTT--AVEDRKLFIGMVSKKYGEN 152
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMR 210
EV +FS +G++E+ ++R QSRGC FV ++ R MA AI ++ TM
Sbjct: 153 EVRMMFSSFGQIEECRILRGPDGQSRGCAFVTFATRAMAQNAIKTMHHSQTME 205
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + TE E++E+F P+G V + ++RD + QS+GC FV + R AL A
Sbjct: 47 KMFVGQIPRSWTETELKELFEPFGAVYQINILRDRAQNPPQSKGCCFVTFYTRKAALEAQ 106
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 107 NALHNIKTLSGMHHPIQMKPADSEKTTAVEDR 138
>gi|341865543|tpg|DAA34911.1| TPA_exp: RRM domain-containing RNA-binding protein Bruno
[Pleurobrachia pileus]
Length = 384
Score = 122 bits (305), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 100/174 (57%), Gaps = 7/174 (4%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG VPK E D++P FE++G ++ + + +D+ + +GC F+ + + A+ A+
Sbjct: 19 KLFVGQVPKNFEESDLKPYFEKYGPLVNIKVCRDRDSKAHKGCAFVTFTNLDNAENAMHE 78
Query: 113 LHNQHTLPGGVGPIQVRYA-DGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+H++ LPG +Q++ D + ++ + +LFVG ++K E++ +F +G V D
Sbjct: 79 MHDRIALPGAKKEMQIKAVHDDDNKKF---DKRLFVGMISKSLNGDELKAMFEQFGEVVD 135
Query: 172 VYLMRDEL---KQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ + K SRGCGFVK++ L AI ++ TM GC+ PL V+ AD
Sbjct: 136 CNILTSMINGEKMSRGCGFVKFAKASSCLQAIKEMHQSQTMEGCNSPLVVKHAD 189
>gi|12642586|gb|AAK00297.1|AF314172_1 BRUNOL2 [Mus musculus]
Length = 436
Score = 122 bits (305), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 86/138 (62%), Gaps = 3/138 (2%)
Query: 91 QQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGS 149
Q +GCCF+ + T + A A ALHN LPG PIQ++ AD E+ AVE KLF+G
Sbjct: 6 QSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGM 63
Query: 150 LNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTM 209
++K+ TE ++ +FS +G++E+ ++R SRGC FV ++ R MA AI A++ TM
Sbjct: 64 ISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTM 123
Query: 210 RGCDQPLTVRFADPKRPR 227
GC P+ V+FAD ++ +
Sbjct: 124 EGCSSPMVVKFADTQKDK 141
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G + K E DIR +F G + E +++ G +GC F+ + T A AI+A
Sbjct: 58 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRTMAQTAIKA 116
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
+H T+ G P+ V++AD ++++
Sbjct: 117 MHQAQTMEGCSSPMVVKFADTQKDK 141
>gi|294877840|ref|XP_002768153.1| hypothetical protein Pmar_PMAR002941 [Perkinsus marinus ATCC 50983]
gi|239870350|gb|EER00871.1| hypothetical protein Pmar_PMAR002941 [Perkinsus marinus ATCC 50983]
Length = 996
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 103/183 (56%), Gaps = 7/183 (3%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQ-GCCFIKYATSEEADRAI 110
+LFVG +P E++IR LFE +G V EV LI+ K+ G+QQ GC F+K+ EA AI
Sbjct: 9 VRLFVGKLPAAWNEQNIRDLFEAYGEVQEVGLIRPKENGKQQTGCAFVKFGAVHEAATAI 68
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVEY------KLFVGSLNKQATEKEVEEIFS 164
++L+ + G +QV++A+GE ERLG E KLFVG+++ E + F
Sbjct: 69 KSLNGTYKADDASGFVQVQFANGEPERLGLPEDTEGYSQKLFVGNVSSLLFEAKAMLFFP 128
Query: 165 PYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224
YG V + Y + + FV++S + AL AI+ALN YT G P+TV+ AD +
Sbjct: 129 RYGNVTEAYSLESKRASGNKAAFVRFSKKSDALKAIDALNDKYTFPGEPHPITVKCADTR 188
Query: 225 RPR 227
R
Sbjct: 189 EQR 191
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMR--DELKQSRGCGFVKYSHRDMALAAIN 201
+LFVG L E+ + ++F YG V++V L+R + KQ GC FVK+ A AI
Sbjct: 10 RLFVGKLPAAWNEQNIRDLFEAYGEVQEVGLIRPKENGKQQTGCAFVKFGAVHEAATAIK 69
Query: 202 ALNGIYTMRGCDQPLTVRFADPKRPRPG 229
+LNG Y + V+FA+ + R G
Sbjct: 70 SLNGTYKADDASGFVQVQFANGEPERLG 97
>gi|355562286|gb|EHH18880.1| hypothetical protein EGK_19447, partial [Macaca mulatta]
gi|355782632|gb|EHH64553.1| hypothetical protein EGM_17798, partial [Macaca fascicularis]
Length = 433
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 85/135 (62%), Gaps = 3/135 (2%)
Query: 94 GCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNK 152
GCCF+ + T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K
Sbjct: 3 GCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSK 60
Query: 153 QATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGC 212
+ E ++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC
Sbjct: 61 KCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGC 120
Query: 213 DQPLTVRFADPKRPR 227
P+ V+FAD ++ +
Sbjct: 121 SSPIVVKFADTQKDK 135
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G V K E DIR +F G + E +++ G +GC F+ ++T A AI+A
Sbjct: 52 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPD-GLSRGCAFVTFSTRAMAQNAIKA 110
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
+H T+ G PI V++AD ++++
Sbjct: 111 MHQSQTMEGCSSPIVVKFADTQKDK 135
Score = 38.9 bits (89), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 348 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 407
Query: 112 ALH 114
A++
Sbjct: 408 AMN 410
>gi|194389144|dbj|BAG61589.1| unnamed protein product [Homo sapiens]
Length = 145
Score = 120 bits (300), Expect = 3e-24, Method: Composition-based stats.
Identities = 60/138 (43%), Positives = 89/138 (64%), Gaps = 3/138 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKY 190
++R S+GC FVK+
Sbjct: 125 TVLRGPDGTSKGCAFVKF 142
>gi|355701918|gb|EHH29271.1| CUGBP Elav-like family member 4, partial [Macaca mulatta]
Length = 409
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 105/211 (49%), Gaps = 38/211 (18%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 27 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV--- 141
KD+ TG +H + PIQV+ AD E R G+
Sbjct: 87 KDRFTG----------------------MHKMNR------PIQVKPADSE-SRGGSSCLR 117
Query: 142 -----EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMA 196
+ KLFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A
Sbjct: 118 QPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEA 177
Query: 197 LAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
AAINAL+G TM G L V+FAD + R
Sbjct: 178 QAAINALHGSQTMPGASSSLVVKFADTDKER 208
>gi|330801309|ref|XP_003288671.1| hypothetical protein DICPUDRAFT_152921 [Dictyostelium purpureum]
gi|325081293|gb|EGC34814.1| hypothetical protein DICPUDRAFT_152921 [Dictyostelium purpureum]
Length = 348
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 113/175 (64%), Gaps = 5/175 (2%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
+FVG +P + EE + +F + GN+I++ +IKDK+T +GC FI ++T EEAD AI +
Sbjct: 19 VFVGHIPSSMNEEGVSNIFGKFGNIIDITIIKDKRTNVSKGCAFITFSTKEEADMAINTV 78
Query: 114 HNQHTLPGGVG-PIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
+ +T + P+QV+Y+D E E++ E KLF+G L A E +V +IF +G +E++
Sbjct: 79 NESNTFLENMNKPLQVKYSDNEIEKM---ERKLFIGMLGT-ADEDQVRQIFGNFGIIEEL 134
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R++ + +G GF+K+S RD + A+ L+ +T+ G + PL V+FAD +R +
Sbjct: 135 TVVREKDGKPKGYGFIKFSTRDESENALRELDQKHTVPGSNLPLIVKFADTERQK 189
Score = 43.1 bits (100), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
LF+ +P T +E+++ LF +GNV+ + DK T Q + F+ Y ++ A +AI+ L
Sbjct: 269 LFIYYLPFTYGDEELKQLFSPYGNVVSSKVFIDKNTQQSKCFGFVSYDNTQSAIQAIQEL 328
Query: 114 H 114
+
Sbjct: 329 N 329
Score = 40.0 bits (92), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGC-GFVKYSHRDMALAAINAL 203
LF+ L ++E++++FSPYG V + D+ Q C GFV Y + A+ AI L
Sbjct: 269 LFIYYLPFTYGDEELKQLFSPYGNVVSSKVFIDKNTQQSKCFGFVSYDNTQSAIQAIQEL 328
Query: 204 NG 205
NG
Sbjct: 329 NG 330
>gi|350580719|ref|XP_003123087.3| PREDICTED: CUGBP, Elav-like family member 5 [Sus scrofa]
Length = 444
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 83/137 (60%), Gaps = 2/137 (1%)
Query: 91 QQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSL 150
+Q GC F+ Y + A +A ALH Q TLPG PIQV+ AD E G + KLFVG L
Sbjct: 43 KQAGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESR--GGRDRKLFVGML 100
Query: 151 NKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMR 210
NKQ +E++V +F P+G +++ ++R S+GC FVK+S A AAI+AL+G TM
Sbjct: 101 NKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMP 160
Query: 211 GCDQPLTVRFADPKRPR 227
G L V+FAD + R
Sbjct: 161 GASSSLVVKFADTDKER 177
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K EED+ LF+ G + E +++ G +GC F+K+++ EA AI A
Sbjct: 94 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPD-GSSKGCAFVKFSSHTEAQAAIHA 152
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH T+PG + V++AD ++ER
Sbjct: 153 LHGSQTMPGASSSLVVKFADTDKER 177
>gi|299472576|emb|CBN78228.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 583
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 88/153 (57%), Gaps = 10/153 (6%)
Query: 83 LIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGE--RERLG- 139
+I+D++T +GC F+ Y T E +RA+ HN+ LP P+QVR AD + +RLG
Sbjct: 2 VIRDRQTDAHRGCAFLTYQTREAGERAVDKFHNKVKLPNAHNPVQVRPADSQMGDDRLGP 61
Query: 140 -------AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSH 192
E KLFVG L A + + E+FS +G + ++Y MR+ +GC FVK+S
Sbjct: 62 NGRVAPVDRENKLFVGMLPHDADDMTLTEVFSRFGEITEIYCMRNPDGTPKGCAFVKFST 121
Query: 193 RDMALAAINALNGIYTMRGCDQPLTVRFADPKR 225
R A+AAI AL+ TM G + L V+FAD K+
Sbjct: 122 RSAAIAAIEALHEKCTMDGATRALVVKFADVKK 154
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P A + + +F G + E+ +++ G +GC F+K++T A AI A
Sbjct: 73 KLFVGMLPHDADDMTLTEVFSRFGEITEIYCMRNPD-GTPKGCAFVKFSTRSAAIAAIEA 131
Query: 113 LHNQHTLPGGVGPIQVRYAD 132
LH + T+ G + V++AD
Sbjct: 132 LHEKCTMDGATRALVVKFAD 151
Score = 42.7 bits (99), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINA 202
LF+ L T+ ++ F+P+G V + D+ Q S+G GFV Y+H A AI+
Sbjct: 326 NLFIYHLPNDLTDADLATAFAPFGHVVSAKVFLDKRTQESKGFGFVSYNHPAEAEVAISK 385
Query: 203 LNGI 206
+NG
Sbjct: 386 MNGF 389
Score = 40.4 bits (93), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P + D+ F G+V+ + DK+T + +G F+ Y EA+ AI
Sbjct: 325 ANLFIYHLPNDLTDADLATAFAPFGHVVSAKVFLDKRTQESKGFGFVSYNHPAEAEVAIS 384
Query: 112 ALHNQHTLPGGVGPIQVRYAD-GERERLGAVEY 143
+ N + +Q + AD G+RE + Y
Sbjct: 385 KM-NGFQIGSKRLKVQHKKADHGDREHESPLRY 416
>gi|351694709|gb|EHA97627.1| CUG-BP- and ETR-3-like factor 5, partial [Heterocephalus glaber]
Length = 300
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 81/134 (60%), Gaps = 2/134 (1%)
Query: 94 GCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQ 153
GC F+ Y + A +A ALH Q TLPG PIQV+ AD E G + KLFVG LNKQ
Sbjct: 1 GCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESR--GGRDRKLFVGMLNKQ 58
Query: 154 ATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCD 213
+E++V +F P+G +++ ++R S+GC FVK+S A AAI+AL+G TM G
Sbjct: 59 QSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGAS 118
Query: 214 QPLTVRFADPKRPR 227
L V+FAD + R
Sbjct: 119 SSLVVKFADTDKER 132
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K EED+ LF+ G + E +++ G +GC F+K+++ EA AI A
Sbjct: 49 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPD-GSSKGCAFVKFSSHTEAQAAIHA 107
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH T+PG + V++AD ++ER
Sbjct: 108 LHGSQTMPGASSSLVVKFADTDKER 132
>gi|449270204|gb|EMC80905.1| CUG-BP- and ETR-3-like factor 5, partial [Columba livia]
Length = 403
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 80/134 (59%), Gaps = 2/134 (1%)
Query: 94 GCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQ 153
GC F+ Y + A +A ALH Q TLPG PIQV+ AD E G + KLFVG LNKQ
Sbjct: 1 GCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESR--GGRDRKLFVGMLNKQ 58
Query: 154 ATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCD 213
+E +V +F P+G +++ ++R S+GC FVK+S A AAI+AL+G TM G
Sbjct: 59 QSEDDVLRLFEPFGVIDECTVLRGPDGNSKGCAFVKFSSHTEAQAAIHALHGSQTMPGAS 118
Query: 214 QPLTVRFADPKRPR 227
L V+FAD + R
Sbjct: 119 SSLVVKFADTDKER 132
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K E+D+ LFE G + E +++ G +GC F+K+++ EA AI A
Sbjct: 49 KLFVGMLNKQQSEDDVLRLFEPFGVIDECTVLRGPD-GNSKGCAFVKFSSHTEAQAAIHA 107
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH T+PG + V++AD ++ER
Sbjct: 108 LHGSQTMPGASSSLVVKFADTDKER 132
>gi|334348392|ref|XP_001367508.2| PREDICTED: CUGBP Elav-like family member 2-like [Monodelphis
domestica]
Length = 575
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 83/134 (61%), Gaps = 3/134 (2%)
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQ 153
CCF+ + T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+
Sbjct: 146 CCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKK 203
Query: 154 ATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCD 213
E ++ +FSP+G++E+ ++R SRGC FV +S R MA AI ++ TM GC
Sbjct: 204 CNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKTMHQSQTMEGCS 263
Query: 214 QPLTVRFADPKRPR 227
P+ V+FAD ++ +
Sbjct: 264 SPIVVKFADTQKDK 277
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G V K E DIR +F G + E +++ G +GC F+ ++T A AI+
Sbjct: 194 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPD-GLSRGCAFVTFSTRAMAQNAIKT 252
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
+H T+ G PI V++AD ++++
Sbjct: 253 MHQSQTMEGCSSPIVVKFADTQKDK 277
>gi|395513595|ref|XP_003761008.1| PREDICTED: CUGBP Elav-like family member 5 [Sarcophilus harrisii]
Length = 429
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 84/143 (58%), Gaps = 2/143 (1%)
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYK 144
++ G+ C F+ Y + A +A ALH Q TLPG PIQV+ AD E G + K
Sbjct: 20 ENDTKGEITWCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESR--GGRDRK 77
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALN 204
LFVG LNKQ +E++V +F P+G +++ ++R S+GC FVK+S A AAI+AL+
Sbjct: 78 LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGNSKGCAFVKFSSHTEAQAAIHALH 137
Query: 205 GIYTMRGCDQPLTVRFADPKRPR 227
G TM G L V+FAD + R
Sbjct: 138 GSQTMPGASSSLVVKFADTDKER 160
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K EED+ LF+ G + E +++ G +GC F+K+++ EA AI A
Sbjct: 77 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPD-GNSKGCAFVKFSSHTEAQAAIHA 135
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH T+PG + V++AD ++ER
Sbjct: 136 LHGSQTMPGASSSLVVKFADTDKER 160
>gi|326934283|ref|XP_003213221.1| PREDICTED: CUGBP Elav-like family member 5-like [Meleagris
gallopavo]
Length = 379
Score = 115 bits (288), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 82/135 (60%), Gaps = 3/135 (2%)
Query: 93 QGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNK 152
QGC F+ Y + A +A ALH Q TLPG PIQV+ AD E R G + KLFVG LNK
Sbjct: 18 QGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSE-SRGG--DRKLFVGMLNK 74
Query: 153 QATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGC 212
Q +E +V +F P+G +++ ++R S+GC FVK+S A AAI+AL+G TM G
Sbjct: 75 QQSEDDVLRLFEPFGVIDECTVLRGPDGNSKGCAFVKFSSHTEAQAAIHALHGSQTMPGA 134
Query: 213 DQPLTVRFADPKRPR 227
L V+FAD + R
Sbjct: 135 SSSLVVKFADTDKER 149
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K E+D+ LFE G + E +++ G +GC F+K+++ EA AI A
Sbjct: 66 KLFVGMLNKQQSEDDVLRLFEPFGVIDECTVLRGPD-GNSKGCAFVKFSSHTEAQAAIHA 124
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH T+PG + V++AD ++ER
Sbjct: 125 LHGSQTMPGASSSLVVKFADTDKER 149
>gi|294946457|ref|XP_002785076.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Perkinsus
marinus ATCC 50983]
gi|239898488|gb|EER16872.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Perkinsus
marinus ATCC 50983]
Length = 430
Score = 115 bits (288), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 105/185 (56%), Gaps = 9/185 (4%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKT---GQQQGCCFIKYATSEEADR 108
KLFVG +P EE++R LF +G+V EV++I+ K GQ+ GC F+KY +EA
Sbjct: 8 VKLFVGKLPCDWDEEEVRSLFGPYGDVEEVSIIRPKTNPGKGQKYGCAFVKYGAIQEAAA 67
Query: 109 AIRALHNQHTLPGGVGPIQVRYADGERERLG------AVEYKLFVGSLNKQATEKEVEEI 162
AI+ + + T+ GP+Q++YA+GE ERLG V KLFV ++ + E++ +
Sbjct: 68 AIQGMAGKQTVNENAGPLQIQYANGEPERLGLADDTEGVAQKLFVANVPADVDDAELKRV 127
Query: 163 FSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
FS YG V + Y ++ FV++S + L AI+ALN +T D+P+ V+ A+
Sbjct: 128 FSQYGTVTEAYCIQPRRPGGNRAAFVRFSKKSDGLRAIDALNEKFTFPNNDRPVAVKCAE 187
Query: 223 PKRPR 227
+ R
Sbjct: 188 TREQR 192
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK----QSRGCGFVKYSHRDMALAA 199
KLFVG L E+EV +F PYG VE+V ++R + Q GC FVKY A AA
Sbjct: 9 KLFVGKLPCDWDEEEVRSLFGPYGDVEEVSIIRPKTNPGKGQKYGCAFVKYGAIQEAAAA 68
Query: 200 INALNGIYTMRGCDQPLTVRFADPKRPRPG 229
I + G T+ PL +++A+ + R G
Sbjct: 69 IQGMAGKQTVNENAGPLQIQYANGEPERLG 98
>gi|237836675|ref|XP_002367635.1| RNA recognition motif domain containing protein [Toxoplasma gondii
ME49]
gi|211965299|gb|EEB00495.1| RNA recognition motif domain containing protein [Toxoplasma gondii
ME49]
gi|221483936|gb|EEE22240.1| conserved hypothetical protein [Toxoplasma gondii GT1]
gi|221505218|gb|EEE30872.1| RNA-binding protein, putative [Toxoplasma gondii VEG]
Length = 230
Score = 115 bits (287), Expect = 9e-23, Method: Composition-based stats.
Identities = 71/186 (38%), Positives = 104/186 (55%), Gaps = 27/186 (14%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P T E+ + LF + G + +V LI+D+ T +GC F+ + +ADRAIR
Sbjct: 40 KLFVGRLPLTVTEDILCTLFNQFGPIADVVLIRDRHTNAFKGCAFVTMQSITDADRAIRH 99
Query: 113 LHNQHTLPGGVGPIQVRYADGERERL------------GAVEYKLFVGSLNKQATEKEVE 160
L + + L +G +QV+YA GE ERL G + KLFVGSL E +
Sbjct: 100 LDSAYVLDPALGGLQVKYAVGEAERLGLPGTSGSGAAAGVDQVKLFVGSLPPDIKEDALR 159
Query: 161 EIFSPYGRVEDVYLMRDEL--------------KQSR-GCGFVKYSHRDMALAAINALNG 205
++F +GRVE+V+LM+DE K+SR GC FV++++++ A AI+ LNG
Sbjct: 160 DLFERFGRVEEVFLMKDEPGNGANLSGGAPRPGKKSRTGCAFVRFAYKEEAFFAISELNG 219
Query: 206 IYTMRG 211
M G
Sbjct: 220 KVIMPG 225
Score = 53.5 bits (127), Expect = 4e-04, Method: Composition-based stats.
Identities = 38/104 (36%), Positives = 54/104 (51%), Gaps = 19/104 (18%)
Query: 34 GFSGRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDK------ 87
G SG G + G KLFVGS+P +E+ +R LFE G V EV L+KD+
Sbjct: 129 GTSGSGAAA-----GVDQVKLFVGSLPPDIKEDALRDLFERFGRVEEVFLMKDEPGNGAN 183
Query: 88 ------KTGQQQ--GCCFIKYATSEEADRAIRALHNQHTLPGGV 123
+ G++ GC F+++A EEA AI L+ + +PG V
Sbjct: 184 LSGGAPRPGKKSRTGCAFVRFAYKEEAFFAISELNGKVIMPGLV 227
Score = 46.2 bits (108), Expect = 0.064, Method: Composition-based stats.
Identities = 37/108 (34%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 135 RERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQS-RGCGFVKYSHR 193
R R V KLFVG L TE + +F+ +G + DV L+RD + +GC FV
Sbjct: 31 RSRAPPVAVKLFVGRLPLTVTEDILCTLFNQFGPIADVVLIRDRHTNAFKGCAFVTMQSI 90
Query: 194 DMALAAINALNGIYTMRGCDQPLTVRFADPKRPR---PGDSRSGPTFG 238
A AI L+ Y + L V++A + R PG S SG G
Sbjct: 91 TDADRAIRHLDSAYVLDPALGGLQVKYAVGEAERLGLPGTSGSGAAAG 138
>gi|354488715|ref|XP_003506512.1| PREDICTED: CUGBP Elav-like family member 5-like [Cricetulus
griseus]
Length = 569
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/133 (45%), Positives = 80/133 (60%), Gaps = 2/133 (1%)
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQA 154
C F+ Y + A +A ALH Q TLPG PIQV+ AD E G + KLFVG LNKQ
Sbjct: 173 CAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESR--GGRDRKLFVGMLNKQQ 230
Query: 155 TEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQ 214
+E++V +F P+G +++ ++R S+GC FVK+S A AAI+AL+G TM G
Sbjct: 231 SEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 290
Query: 215 PLTVRFADPKRPR 227
L V+FAD R R
Sbjct: 291 SLVVKFADTDRER 303
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K EED+ LF+ G + E +++ G +GC F+K+++ EA AI A
Sbjct: 220 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPD-GSSKGCAFVKFSSHTEAQAAIHA 278
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH T+PG + V++AD +RER
Sbjct: 279 LHGSQTMPGASSSLVVKFADTDRER 303
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 134 ERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSH 192
+++R G LF+ L ++ + E+ ++F P+G + + D QS+ GFV + H
Sbjct: 475 QQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDH 534
Query: 193 RDMALAAINALNGI 206
A AAI A+NG
Sbjct: 535 PASAQAAIQAMNGF 548
>gi|403296214|ref|XP_003939012.1| PREDICTED: CUGBP Elav-like family member 5 [Saimiri boliviensis
boliviensis]
Length = 363
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 82/135 (60%), Gaps = 3/135 (2%)
Query: 93 QGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNK 152
GC F+ Y + A +A ALH Q TLPG PIQV+ AD E R G + KLFVG LNK
Sbjct: 13 HGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSE-SRGG--DRKLFVGMLNK 69
Query: 153 QATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGC 212
Q +E++V +F P+G +++ ++R S+GC FVK+S A AAI+AL+G TM G
Sbjct: 70 QQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGA 129
Query: 213 DQPLTVRFADPKRPR 227
L V+FAD + R
Sbjct: 130 SSSLVVKFADTDKER 144
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K EED+ LF+ G + E +++ G +GC F+K+++ EA AI A
Sbjct: 61 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPD-GSSKGCAFVKFSSHTEAQAAIHA 119
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH T+PG + V++AD ++ER
Sbjct: 120 LHGSQTMPGASSSLVVKFADTDKER 144
>gi|334325385|ref|XP_001367310.2| PREDICTED: CUGBP Elav-like family member 4-like [Monodelphis
domestica]
Length = 460
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/133 (45%), Positives = 77/133 (57%), Gaps = 3/133 (2%)
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQA 154
C F+ Y E A +A ALH Q TLPG PIQV+ AD E + KLFVG LNKQ
Sbjct: 63 CAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLNKQQ 119
Query: 155 TEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQ 214
+E +V +F +G +E+ ++R S+GC FVKYS A AAINAL+G TM G
Sbjct: 120 SEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASS 179
Query: 215 PLTVRFADPKRPR 227
L V+FAD + R
Sbjct: 180 SLVVKFADTDKER 192
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K E+D+R LFE GN+ E +++ G +GC F+KY++ EA AI A
Sbjct: 109 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPD-GNSKGCAFVKYSSHAEAQAAINA 167
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH T+PG + V++AD ++ER
Sbjct: 168 LHGSQTMPGASSSLVVKFADTDKER 192
>gi|363743697|ref|XP_423569.3| PREDICTED: CUGBP Elav-like family member 5 [Gallus gallus]
Length = 404
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 82/135 (60%), Gaps = 3/135 (2%)
Query: 93 QGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNK 152
+GC F+ Y + A +A ALH Q TLPG PIQV+ AD E R G + KLFVG LNK
Sbjct: 5 KGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSE-SRGG--DRKLFVGMLNK 61
Query: 153 QATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGC 212
Q +E +V +F P+G +++ ++R S+GC FVK+S A AAI+AL+G TM G
Sbjct: 62 QQSEDDVLRLFEPFGVIDECTVLRGPDGNSKGCAFVKFSSHTEAQAAIHALHGSQTMPGA 121
Query: 213 DQPLTVRFADPKRPR 227
L V+FAD + R
Sbjct: 122 SSSLVVKFADTDKER 136
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K E+D+ LFE G + E +++ G +GC F+K+++ EA AI A
Sbjct: 53 KLFVGMLNKQQSEDDVLRLFEPFGVIDECTVLRGPD-GNSKGCAFVKFSSHTEAQAAIHA 111
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH T+PG + V++AD ++ER
Sbjct: 112 LHGSQTMPGASSSLVVKFADTDKER 136
>gi|444509480|gb|ELV09276.1| CUGBP Elav-like family member 5, partial [Tupaia chinensis]
Length = 329
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 82/134 (61%), Gaps = 3/134 (2%)
Query: 94 GCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQ 153
GC F+ Y + A +A ALH Q TLPG PIQV+ AD E R G + KLFVG LNKQ
Sbjct: 1 GCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSE-SRGG--DRKLFVGMLNKQ 57
Query: 154 ATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCD 213
+E++V +F P+G +++ ++R S+GC FVK+S A AAI+AL+G TM G
Sbjct: 58 QSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGAS 117
Query: 214 QPLTVRFADPKRPR 227
L V+FAD + R
Sbjct: 118 SSLVVKFADTDKER 131
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K EED+ LF+ G + E +++ G +GC F+K+++ EA AI A
Sbjct: 48 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPD-GSSKGCAFVKFSSHTEAQAAIHA 106
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH T+PG + V++AD ++ER
Sbjct: 107 LHGSQTMPGASSSLVVKFADTDKER 131
>gi|440912153|gb|ELR61745.1| CUGBP Elav-like family member 5, partial [Bos grunniens mutus]
Length = 398
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 80/133 (60%), Gaps = 2/133 (1%)
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQA 154
C F+ Y + A +A ALH Q TLPG PIQV+ AD E G + KLFVG LNKQ
Sbjct: 1 CAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESR--GGRDRKLFVGMLNKQQ 58
Query: 155 TEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQ 214
+E++V +F P+G +++ ++R S+GC FVK+S A AAI+AL+G TM G
Sbjct: 59 SEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 118
Query: 215 PLTVRFADPKRPR 227
L V+FAD + R
Sbjct: 119 SLVVKFADTDKER 131
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K EED+ LF+ G + E +++ G +GC F+K+++ EA AI A
Sbjct: 48 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPD-GSSKGCAFVKFSSHTEAQAAIHA 106
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH T+PG + V++AD ++ER
Sbjct: 107 LHGSQTMPGASSSLVVKFADTDKER 131
>gi|410950073|ref|XP_004001486.1| PREDICTED: LOW QUALITY PROTEIN: CUGBP Elav-like family member 5
[Felis catus]
Length = 479
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 80/133 (60%), Gaps = 2/133 (1%)
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQA 154
C F+ Y + A +A ALH Q TLPG PIQV+ AD E G + KLFVG LNKQ
Sbjct: 22 CAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESR--GGRDRKLFVGMLNKQQ 79
Query: 155 TEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQ 214
+E++V +F P+G +++ ++R S+GC FVK+S A AAI+AL+G TM G
Sbjct: 80 SEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 139
Query: 215 PLTVRFADPKRPR 227
L V+FAD + R
Sbjct: 140 SLVVKFADTDKER 152
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K EED+ LF+ G + E +++ G +GC F+K+++ EA AI A
Sbjct: 69 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPD-GSSKGCAFVKFSSHTEAQAAIHA 127
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH T+PG + V++AD ++ER
Sbjct: 128 LHGSQTMPGASSSLVVKFADTDKER 152
>gi|410045110|ref|XP_003313076.2| PREDICTED: CUGBP Elav-like family member 1 [Pan troglodytes]
Length = 461
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 87/135 (64%), Gaps = 5/135 (3%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRV 169
ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++ +FS +G++
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDIRVMFSSFGQI 161
Query: 170 EDVYLMRDELKQSRG 184
E+ ++R SRG
Sbjct: 162 EECRILRGPDGLSRG 176
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ + + G P+ ++ AD ++ + R
Sbjct: 104 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDR 135
>gi|328776307|ref|XP_393833.4| PREDICTED: CUGBP Elav-like family member 4-like [Apis mellifera]
Length = 525
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 81/136 (59%), Gaps = 4/136 (2%)
Query: 92 QQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLN 151
Q GC F+ Y + + A A ALH + TLPG PIQV+ AD E + KLFVG L+
Sbjct: 109 QPGCAFLTYYSRDSAISAQNALHEKRTLPGMNRPIQVKPADSENRG----DRKLFVGMLS 164
Query: 152 KQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRG 211
KQ TE +V ++F+ +G +E+ ++R SRGC FVK S ALAAIN L+G TM G
Sbjct: 165 KQQTEDDVRQLFTAFGTIEECTILRGPDGSSRGCAFVKLSSHQEALAAINTLHGSQTMPG 224
Query: 212 CDQPLTVRFADPKRPR 227
L V+FAD ++ R
Sbjct: 225 ASSSLVVKFADTEKER 240
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K E+D+R LF G + E +++ G +GC F+K ++ +EA AI
Sbjct: 157 KLFVGMLSKQQTEDDVRQLFTAFGTIEECTILRGPD-GSSRGCAFVKLSSHQEALAAINT 215
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH T+PG + V++AD E+ER
Sbjct: 216 LHGSQTMPGASSSLVVKFADTEKER 240
>gi|350403945|ref|XP_003486959.1| PREDICTED: LOW QUALITY PROTEIN: CUGBP Elav-like family member
4-like [Bombus impatiens]
Length = 522
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 81/136 (59%), Gaps = 4/136 (2%)
Query: 92 QQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLN 151
Q GC F+ Y + + A A ALH + TLPG PIQV+ AD E + KLFVG L+
Sbjct: 109 QPGCAFLTYYSRDSAISAQNALHEKRTLPGMNRPIQVKPADSENRG----DRKLFVGMLS 164
Query: 152 KQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRG 211
KQ TE +V ++F+ +G +E+ ++R SRGC FVK S ALAAIN L+G TM G
Sbjct: 165 KQQTEDDVRQLFTAFGTIEECTILRGPDGSSRGCAFVKLSSHQEALAAINTLHGSQTMPG 224
Query: 212 CDQPLTVRFADPKRPR 227
L V+FAD ++ R
Sbjct: 225 ASSSLVVKFADTEKER 240
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K E+D+R LF G + E +++ G +GC F+K ++ +EA AI
Sbjct: 157 KLFVGMLSKQQTEDDVRQLFTAFGTIEECTILRGPD-GSSRGCAFVKLSSHQEALAAINT 215
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH T+PG + V++AD E+ER
Sbjct: 216 LHGSQTMPGASSSLVVKFADTEKER 240
>gi|313227641|emb|CBY22788.1| unnamed protein product [Oikopleura dioica]
Length = 401
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 90/152 (59%), Gaps = 4/152 (2%)
Query: 71 LFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRY 130
+F+E G V ++ +++D+ TG +GCCF+ + ++ AD A RAL+ LPG + P+Q+R
Sbjct: 1 MFKEFGEVFDLQILRDRITGHSRGCCFVTFFETKSADDAQRALNGIRVLPGMLNPVQMRA 60
Query: 131 ADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKY 190
AD E+ + +LF+G L E+ ++++F YG+++++ ++R SR C F+ +
Sbjct: 61 ADSEKRS----DRRLFIGMLPITCDEEMLKKMFEQYGKIQELQVLRKFNGTSRRCAFLTF 116
Query: 191 SHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
S R A +A+ ALN C Q + VR AD
Sbjct: 117 SSRLEAQSAVQALNNTVVSSICAQGMVVRLAD 148
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
+LF+G +P T EE ++ +FE++G + E+ +++ K G + C F+ +++ EA A++A
Sbjct: 70 RLFIGMLPITCDEEMLKKMFEQYGKIQELQVLR-KFNGTSRRCAFLTFSSRLEAQSAVQA 128
Query: 113 LHNQHTLPGGVGPIQVRYAD 132
L+N + VR AD
Sbjct: 129 LNNTVVSSICAQGMVVRLAD 148
>gi|118404110|ref|NP_001072378.1| CUGBP Elav-like family member 4 [Xenopus (Silurana) tropicalis]
gi|123914769|sp|Q0V9L3.1|CELF4_XENTR RecName: Full=CUGBP Elav-like family member 4; Short=CELF-4;
AltName: Full=Bruno-like protein 4; AltName:
Full=CUG-BP- and ETR-3-like factor 4; AltName:
Full=RNA-binding protein BRUNOL-4
gi|111305714|gb|AAI21491.1| bruno-like 4, RNA binding protein [Xenopus (Silurana) tropicalis]
Length = 424
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 82/175 (46%), Gaps = 46/175 (26%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+ Y E A +A A
Sbjct: 48 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 107
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E
Sbjct: 108 LHEQKTLPGMNRPIQVKPADSESR------------------------------------ 131
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
GC FVKYS A AAINAL+G TM G L V+FAD + R
Sbjct: 132 ----------GGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKER 176
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 16/119 (13%)
Query: 120 PGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDEL 179
PGG I ++ D KLF+G + + EK+++ +F +G++ ++ +++D
Sbjct: 33 PGGAATIPMKDHDA---------IKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRF 83
Query: 180 K-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTF 237
+GC F+ Y R+ AL A +AL+ T+ G ++P+ V+ AD +SR G F
Sbjct: 84 TGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPAD------SESRGGCAF 136
>gi|32364108|gb|AAP80205.1| FCA-like protein [Triticum aestivum]
Length = 443
Score = 112 bits (280), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 116/287 (40%), Positives = 143/287 (49%), Gaps = 35/287 (12%)
Query: 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGP 244
CGFVK+S ++ ALAA+N+L+G Y MRGC+QPL VRFADPKRPRPG+S GP FGGPG
Sbjct: 1 CGFVKFSSKEPALAAMNSLSGTYIMRGCEQPLIVRFADPKRPRPGESGGGPAFGGPGVSS 60
Query: 245 RFQPP-SPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMP 303
R RP N I +P ++W P SP +M P FG+ G +G P
Sbjct: 61 RSDAALVIRPTANLDGQIGRHMPPDSWRPSSPSSMAPHQ---FNNFGSD--NSMGLMGGP 115
Query: 304 LNPGGPADVPLPGLAVSSTSSALQQNFCQPESQ----APSLGQ-------QISPLQKPLQ 352
+ P + + S L P S PSL Q QISPLQKP
Sbjct: 116 VTSAADNVTFRPQMFHGNGS--LSSQTAVPTSSHMGINPSLSQGHHLGGPQISPLQKPTG 173
Query: 353 SPQHMPPLQLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQG 412
PQ+ P+QL + Q L Q G SF Q +P+ L G LP SQP
Sbjct: 174 QPQNF-PVQLQ--------NAQQGQLHASQSLGPGSFGQNIPTMQL---PGQLPVSQPLT 221
Query: 413 QQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQ-QQLHQPYQQ 458
QQ AS+ AL P + QS+ + QQQLP+ V Q L QP QQ
Sbjct: 222 QQNASAG-ALQAPSAV--QSNPMQAVPGQQQLPSNVTPQMLQQPVQQ 265
>gi|302832507|ref|XP_002947818.1| hypothetical protein VOLCADRAFT_88093 [Volvox carteri f.
nagariensis]
gi|300267166|gb|EFJ51351.1| hypothetical protein VOLCADRAFT_88093 [Volvox carteri f.
nagariensis]
Length = 1966
Score = 112 bits (279), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 102/185 (55%), Gaps = 15/185 (8%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
+LFVGSVP+TA E +R FE+ G V ++A+++D+ +G+ +GC F+ Y T EEA+ AI+
Sbjct: 31 RLFVGSVPRTAVEATLREYFEQCGVVRDLAVLRDRTSGKSRGCAFVSYLTLEEAEAAIQK 90
Query: 113 LHNQHTLPGGVGPIQVRYA------------DGERERLGA-VEYKLFVGSLNKQATEKEV 159
Q LPG P++VR+A G R+ + V L V + E E+
Sbjct: 91 FDRQLMLPGSQTPLEVRFAKNHSYVQAGEGPSGNRQIFFSRVPLTLKVCH-HVAYEEDEI 149
Query: 160 EEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218
+F YG VE + + + +S+GCGF++ R+ A+AA+ L+ + ++V
Sbjct: 150 LSLFLAYGEVETINVFKCRRSGRSKGCGFIEMRTREAAIAAMENLDERHVFDSTGTAISV 209
Query: 219 RFADP 223
R+ADP
Sbjct: 210 RWADP 214
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 92/188 (48%), Gaps = 18/188 (9%)
Query: 53 KLFVGSVPKTAR--------EEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSE 104
++F VP T + E++I LF +G V + + K +++G+ +GC FI+ T E
Sbjct: 126 QIFFSRVPLTLKVCHHVAYEEDEILSLFLAYGEVETINVFKCRRSGRSKGCGFIEMRTRE 185
Query: 105 EADRAIRALHNQHTLPGGVGPIQVRYADGE--------RERLGAVEYKLFVGSLNKQATE 156
A A+ L +H I VR+AD + + A LF + + TE
Sbjct: 186 AAIAAMENLDERHVFDSTGTAISVRWADPDLQQRKKKAMDDANAENRMLFFAKVLRSTTE 245
Query: 157 KEVEEIFSPYGRVEDVYLMR--DELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQ 214
+V +FS +G+V D+ L R ++GCG V S A+AAI AL+GI+ G D
Sbjct: 246 DDVRRLFSRFGKVYDINLFRAFQGAPTTKGCGLVTMSQHSDAVAAIAALDGIHVWEGMDC 305
Query: 215 PLTVRFAD 222
P+ V++ D
Sbjct: 306 PMVVKWMD 313
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 56/101 (55%), Gaps = 10/101 (9%)
Query: 42 SPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYA 101
+PD+V KLF+G++P+ E+ + LF+ G V+E+ ++ DK T + +G F+ YA
Sbjct: 517 NPDVV------KLFIGNIPRGCTEKHLLALFQSIGKVVELVIMYDKVTREPKGSAFVWYA 570
Query: 102 TSEEADRAIRALHNQHTLPGGVG----PIQVRYADGERERL 138
T E+A+RAI + + P G P+ VR A R+
Sbjct: 571 TREDAERAILQFNLRPVFPDPSGAQDRPLVVRKAKARSSRM 611
Score = 45.4 bits (106), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 13/93 (13%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDEL-KQSRGCGFVKYSHRDMALAAINA 202
KLF+G++ + TEK + +F G+V ++ +M D++ ++ +G FV Y+ R+ A AI
Sbjct: 522 KLFIGNIPRGCTEKHLLALFQSIGKVVELVIMYDKVTREPKGSAFVWYATREDAERAILQ 581
Query: 203 LNGIYTMR--------GCDQPLTVRFADPKRPR 227
N +R D+PL VR A + R
Sbjct: 582 FN----LRPVFPDPSGAQDRPLVVRKAKARSSR 610
>gi|120419456|gb|ABM21547.1| trinucleotide repeat containing 4 [Bos taurus]
Length = 139
Score = 112 bits (279), Expect = 9e-22, Method: Composition-based stats.
Identities = 57/133 (42%), Positives = 85/133 (63%), Gaps = 3/133 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGC 185
++R S+GC
Sbjct: 125 TVLRGPDGTSKGC 137
>gi|47219454|emb|CAG10818.1| unnamed protein product [Tetraodon nigroviridis]
Length = 413
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 83/176 (47%), Gaps = 48/176 (27%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y E A +A A
Sbjct: 11 KLFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQNA 70
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E
Sbjct: 71 LHEQKTLPGMNRPIQVKPADSE-------------------------------------- 92
Query: 173 YLMRDELKQSR-GCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
SR GC FVKY A AAIN L+G T+ G L V+FAD ++ R
Sbjct: 93 ---------SRGGCAFVKYQSNAEAQAAINTLHGSRTLPGASSSLVVKFADSEKER 139
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 56/95 (58%), Gaps = 7/95 (7%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINA 202
KLF+G + + EK+++ IF +G++ ++ +++D+ +GC F+ Y R+ AL A NA
Sbjct: 11 KLFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQNA 70
Query: 203 LNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTF 237
L+ T+ G ++P+ V+ AD +SR G F
Sbjct: 71 LHEQKTLPGMNRPIQVKPAD------SESRGGCAF 99
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AI A+
Sbjct: 330 IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPSSAQTAIQAM 389
Query: 204 NGI 206
NG
Sbjct: 390 NGF 392
>gi|47221605|emb|CAF97870.1| unnamed protein product [Tetraodon nigroviridis]
Length = 400
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 87/183 (47%), Gaps = 46/183 (25%)
Query: 45 LVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSE 104
L+ + KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y E
Sbjct: 3 LMKEADAIKLFVGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARE 62
Query: 105 EADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFS 164
A +A ALH Q TLPG PIQV+ AD E
Sbjct: 63 SALKAQSALHEQKTLPGMNRPIQVKPADSE------------------------------ 92
Query: 165 PYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224
GR GC FVK+ A AAIN+L+G TM G L V+FAD +
Sbjct: 93 --GR--------------GGCAFVKFQGHAEAQAAINSLHGSRTMPGASSSLVVKFADTE 136
Query: 225 RPR 227
+ R
Sbjct: 137 KER 139
>gi|170592252|ref|XP_001900883.1| RNA recognition motif. [Brugia malayi]
gi|158591750|gb|EDP30354.1| RNA recognition motif [Brugia malayi]
Length = 487
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 85/143 (59%), Gaps = 10/143 (6%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
P PD + K+FVG +P++ E + R LFE+ G+V ++ +++DK T +GCCF+ Y
Sbjct: 17 PDPDAI------KMFVGQIPRSWGETECRELFEQFGSVCQLNVLRDKVTQTSRGCCFVTY 70
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVE 160
+A A ALHN LP P+Q++ AD E E KLF+G LNK+ TE +V
Sbjct: 71 YKRADAIAAQAALHNIRVLPQMYHPVQMKPADIENRN----ERKLFIGMLNKKLTEDDVR 126
Query: 161 EIFSPYGRVEDVYLMRDELKQSR 183
E+F+ +G +ED +++D +SR
Sbjct: 127 EMFAQFGHIEDCTVLKDSEGKSR 149
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINA 202
K+FVG + + E E E+F +G V + ++RD++ Q SRGC FV Y R A+AA A
Sbjct: 23 KMFVGQIPRSWGETECRELFEQFGSVCQLNVLRDKVTQTSRGCCFVTYYKRADAIAAQAA 82
Query: 203 LNGIYTMRGCDQPLTVRFAD 222
L+ I + P+ ++ AD
Sbjct: 83 LHNIRVLPQMYHPVQMKPAD 102
>gi|307106109|gb|EFN54356.1| hypothetical protein CHLNCDRAFT_135626 [Chlorella variabilis]
Length = 466
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 105/187 (56%), Gaps = 15/187 (8%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIK--DKKTGQQQGCCFIKYATSEEADRAI 110
+LFVG +P + EED+ P+F +G + +V+L++ D K+ +GCC +++ +A+RA+
Sbjct: 15 RLFVGQIPTSCTEEDLVPVFAGYGEIEKVSLVRGPDNKS---RGCCMVQFKRWADAERAM 71
Query: 111 RALHNQHTLPGGVG-PIQVRYADGERERLGA-------VEYKLFVGSLNKQATEKEVEEI 162
++ L G G P+ +A+ R +G+ KLFVG + K + E ++ +
Sbjct: 72 LDVNGTSPLESGKGRPLVCHFAN-PRRTMGSQMSETAIAPRKLFVGQIPKTSVEADILAV 130
Query: 163 FSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
F P+G VE + +++ + + GC FV+YS AAI AL+ TM G + PL V+FAD
Sbjct: 131 FGPFGEVEQINILKSKGVHA-GCAFVQYSSWAACEAAIEALHDKTTMPGAEHPLVVKFAD 189
Query: 223 PKRPRPG 229
K+ G
Sbjct: 190 AKKSDAG 196
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +PKT+ E DI +F G V ++ ++K K G GC F++Y++ + AI A
Sbjct: 112 KLFVGQIPKTSVEADILAVFGPFGEVEQINILKSK--GVHAGCAFVQYSSWAACEAAIEA 169
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYK 144
LH++ T+PG P+ V++AD ++ G ++ +
Sbjct: 170 LHDKTTMPGAEHPLVVKFADAKKSDAGMMQKR 201
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 53/85 (62%), Gaps = 3/85 (3%)
Query: 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAA 199
A +KLF+G + +A E+++ +F+P G + ++ ++R + +S+GC F+ Y+ R A +A
Sbjct: 381 AYAHKLFIGQIPFEAIEQDLWALFAPAGDILELAILRSQ-GRSKGCAFLTYASRQQATSA 439
Query: 200 INALNGIYTMRGCDQPLTVRFADPK 224
INA NG G + L V+FAD K
Sbjct: 440 INAFNGRQV--GPSKRLVVKFADQK 462
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 61/100 (61%), Gaps = 16/100 (16%)
Query: 37 GRGGPSPDLVDGSSFA-KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGC 95
GRG + D S++A KLF+G +P A E+D+ LF G+++E+A+++ + G+ +GC
Sbjct: 373 GRG-----VADPSAYAHKLFIGQIPFEAIEQDLWALFAPAGDILELAILRSQ--GRSKGC 425
Query: 96 CFIKYATSEEADRAIRALHNQHTLPGGVGP---IQVRYAD 132
F+ YA+ ++A AI A + + VGP + V++AD
Sbjct: 426 AFLTYASRQQATSAINAFNGRQ-----VGPSKRLVVKFAD 460
>gi|118402075|ref|XP_001033357.1| hypothetical protein TTHERM_00421020 [Tetrahymena thermophila]
gi|89287705|gb|EAR85694.1| hypothetical protein TTHERM_00421020 [Tetrahymena thermophila
SB210]
Length = 756
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 96/168 (57%), Gaps = 11/168 (6%)
Query: 61 KTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLP 120
K E D++ FE++G +++V +I+DK Q +GC F+ +A+ A+ AI AL LP
Sbjct: 75 KNMEENDLKTFFEKYGEIVKVQVIRDK-NNQHKGCAFVVFASILCANIAIEALK-ATKLP 132
Query: 121 GGVGPIQVRYADGERERLGAV---EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD 177
G V++AD E +RLG +Y L+V + K A+E E+ +F YG V++V + +D
Sbjct: 133 G------VKWADNEPDRLGIRQDQDYVLYVAHIPKNASEPEIRNVFENYGIVKEVDIPKD 186
Query: 178 ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKR 225
+ SRG FVK+ + + A+ A AL+ + Q L V+F DPK+
Sbjct: 187 QSGTSRGFVFVKFENIEQAILAKQALHEKQVLNNQTQSLVVKFYDPKK 234
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
L+V +PK A E +IR +FE +G V EV + KD ++G +G F+K+ E+A A +AL
Sbjct: 154 LYVAHIPKNASEPEIRNVFENYGIVKEVDIPKD-QSGTSRGFVFVKFENIEQAILAKQAL 212
Query: 114 HNQHTLPGGVGPIQVRYAD 132
H + L + V++ D
Sbjct: 213 HEKQVLNNQTQSLVVKFYD 231
>gi|410911840|ref|XP_003969398.1| PREDICTED: CUGBP Elav-like family member 3-like [Takifugu rubripes]
Length = 458
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 78/134 (58%), Gaps = 4/134 (2%)
Query: 94 GCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQ 153
GC F+ Y E A A ALH Q TLPG PIQV+ AD E + KLFVG L KQ
Sbjct: 55 GCAFLTYCARESALIAQNALHEQKTLPGMNRPIQVKPADSESRG----DRKLFVGMLGKQ 110
Query: 154 ATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCD 213
T+ +V ++F P+G +E+ ++R S+GC FVKY A AAI+AL+G T+ G
Sbjct: 111 QTDADVRKMFEPFGSIEECTVLRGPDGTSKGCAFVKYQSNAEAQAAISALHGSRTLPGAS 170
Query: 214 QPLTVRFADPKRPR 227
L V+FAD ++ R
Sbjct: 171 SSLVVKFADSEKER 184
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K + D+R +FE G++ E +++ G +GC F+KY ++ EA AI A
Sbjct: 101 KLFVGMLGKQQTDADVRKMFEPFGSIEECTVLRGPD-GTSKGCAFVKYQSNAEAQAAISA 159
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH TLPG + V++AD E+ER
Sbjct: 160 LHGSRTLPGASSSLVVKFADSEKER 184
Score = 38.9 bits (89), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINA 202
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AI A
Sbjct: 374 NIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPSSAQTAIQA 433
Query: 203 LNGI 206
+NG
Sbjct: 434 MNGF 437
>gi|156368353|ref|XP_001627659.1| predicted protein [Nematostella vectensis]
gi|156214575|gb|EDO35559.1| predicted protein [Nematostella vectensis]
Length = 383
Score = 108 bits (271), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 93/164 (56%), Gaps = 26/164 (15%)
Query: 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEE 105
V S+ KLFVG VP+T E+D+RP+FE +G + E+ ++KDK TGQ +G +
Sbjct: 14 VRDSNSVKLFVGQVPRTWEEKDLRPIFEPYGQIYELTILKDKYTGQHKGW--------DA 65
Query: 106 ADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSP 165
+ A + LH + TLP G + KLFVG ++K A E+++ +FSP
Sbjct: 66 CNAAQKHLHEKKTLP------------------GMDDRKLFVGMISKHAKEEDLRVMFSP 107
Query: 166 YGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTM 209
+G +E++ ++R+ S+GC F+K+++R A AI ++ TM
Sbjct: 108 FGTIEELTVLRNADSTSKGCAFIKFANRMQAQNAIATMHNSTTM 151
>gi|444724379|gb|ELW64984.1| CUGBP Elav-like family member 2 [Tupaia chinensis]
Length = 585
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 109/216 (50%), Gaps = 46/216 (21%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDK------------- 87
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+
Sbjct: 95 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGLKSE 148
Query: 88 ----------KTGQQQ-----GCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYAD 132
K G G I+ T + + +H+ PIQ++ AD
Sbjct: 149 PQKLELEALSKCGLSDPSKAFGMALIRSLTDIDGSKKKDKMHH---------PIQMKPAD 199
Query: 133 GERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYS 191
E+ AVE KLF+G ++K+ E ++ +FSP+G++E+ ++R SRGC FV +S
Sbjct: 200 SEKSN--AVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFS 257
Query: 192 HRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 258 TRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDK 293
>gi|452823093|gb|EME30106.1| RNA-binding protein [Galdieria sulphuraria]
Length = 477
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 104/191 (54%), Gaps = 13/191 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
K+F+G +P EED+R + E +G V+E +++++ T Q +GC F + EEAD AI+
Sbjct: 40 CKIFIGQLPSNVVEEDLRRICEPYGTVLETTIVRNRMTNQSRGCGFCVFHNREEADNAIQ 99
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
ALH P G P+QVR A+ + E KL++G L E+++ F+ +G + D
Sbjct: 100 ALHGTKPFPSGSKPLQVRLAEKNSD---FSETKLYIGHLEPIVEEQQLRNAFTKFGEIVD 156
Query: 172 VYLMR-----DELKQSRGCGFVKYSHRDMALAAI-NALNG-IYTMRGCDQPLT-VRFADP 223
V ++R ++ GFV++S + A AI +A NG ++ G +PLT VR+A
Sbjct: 157 VNIVRPRNVDNQHNSPYNYGFVEFSGNEAADNAILSAKNGQVWLENG--KPLTEVRYARL 214
Query: 224 KRPRPGDSRSG 234
R R G + G
Sbjct: 215 SRNRYGRNSDG 225
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEE 105
V G S LFV +P + + LF G ++ + DK+T + +G F+ YA +
Sbjct: 385 VRGPSECNLFVYGIPPDWDDAMLANLFLPFGKLLSSNVFIDKRTQRSKGFGFVSYAYPDS 444
Query: 106 ADRAIRALHNQHTLPGG 122
A AI A+ N TLP G
Sbjct: 445 AHMAI-AMLNGMTLPNG 460
>gi|9738913|gb|AAF97846.1|AF127388_1 ABA binding protein [Hordeum vulgare subsp. vulgare]
Length = 472
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 107/277 (38%), Positives = 132/277 (47%), Gaps = 45/277 (16%)
Query: 200 INALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGPGFGPRFQPP-SPRPPPNFG 258
+N+L+G Y MRGC+QPL VRFADPKRPRPG+SR GP FGGPG R RP N
Sbjct: 1 MNSLSGTYIMRGCEQPLIVRFADPKRPRPGESRGGPAFGGPGVSSRSDAALVIRPTANLD 60
Query: 259 DPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLA 318
+ I +P + W P SP +M P FG+ D M L GGP +A
Sbjct: 61 EQIGRHMPPDTWRPSSPSSMAPHQ---FNNFGS-------DNSMGLM-GGPVTSAADNVA 109
Query: 319 ----VSSTSSALQQNFCQPESQ----APSLGQ-------QISPLQKPLQSPQHMPPLQLH 363
+ + +L P S PSL Q QI PLQKP Q+ P+QL
Sbjct: 110 FRPQLFHGNGSLSSQTAVPASSHMGINPSLSQGHHLGGPQIPPLQKPTGLQQNF-PVQLQ 168
Query: 364 PQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQGQQIASSSTALP 423
+ Q L Q G SF Q +P+ L G LP SQP QQ A S+ AL
Sbjct: 169 --------NAQQGQLHASQSLGPGSFGQNIPTMQL---PGQLPVSQPLTQQNA-SACALQ 216
Query: 424 TPLNIKPQ-SSSLPGGTNQQQLPAPVQ-QQLHQPYQQ 458
P ++ S+PG QQQLP+ + Q L QP QQ
Sbjct: 217 APSAVQSNPMQSVPG---QQQLPSNLTPQMLQQPVQQ 250
>gi|397492762|ref|XP_003817289.1| PREDICTED: CUGBP Elav-like family member 3 isoform 3 [Pan paniscus]
gi|426331467|ref|XP_004026702.1| PREDICTED: CUGBP Elav-like family member 3 isoform 3 [Gorilla
gorilla gorilla]
Length = 417
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 78/134 (58%), Gaps = 3/134 (2%)
Query: 94 GCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQ 153
GC F+ Y + A +A ALH Q TLPG PIQV+ AD E + KLFVG L KQ
Sbjct: 2 GCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQ 58
Query: 154 ATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCD 213
T+++V ++F P+G +++ ++R S+GC FVK+ A AAIN L+ T+ G
Sbjct: 59 QTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGAS 118
Query: 214 QPLTVRFADPKRPR 227
L V+FAD ++ R
Sbjct: 119 SSLVVKFADTEKER 132
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K +ED+R +FE G + E +++ G +GC F+K+ T EA AI
Sbjct: 49 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPD-GTSKGCAFVKFQTHAEAQAAINT 107
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH+ TLPG + V++AD E+ER
Sbjct: 108 LHSSRTLPGASSSLVVKFADTEKER 132
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINA 202
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A
Sbjct: 333 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 392
Query: 203 LNGI 206
+NG
Sbjct: 393 MNGF 396
>gi|289547602|ref|NP_001166119.1| CUGBP Elav-like family member 3 isoform 2 [Homo sapiens]
Length = 418
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 78/134 (58%), Gaps = 3/134 (2%)
Query: 94 GCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQ 153
GC F+ Y + A +A ALH Q TLPG PIQV+ AD E + KLFVG L KQ
Sbjct: 2 GCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGMLGKQ 58
Query: 154 ATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCD 213
T+++V ++F P+G +++ ++R S+GC FVK+ A AAIN L+ T+ G
Sbjct: 59 QTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGAS 118
Query: 214 QPLTVRFADPKRPR 227
L V+FAD ++ R
Sbjct: 119 SSLVVKFADTEKER 132
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K +ED+R +FE G + E +++ G +GC F+K+ T EA AI
Sbjct: 49 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPD-GTSKGCAFVKFQTHAEAQAAINT 107
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH+ TLPG + V++AD E+ER
Sbjct: 108 LHSSRTLPGASSSLVVKFADTEKER 132
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINA 202
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A
Sbjct: 334 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 393
Query: 203 LNGI 206
+NG
Sbjct: 394 MNGF 397
>gi|62088108|dbj|BAD92501.1| trinucleotide repeat containing 4 variant [Homo sapiens]
Length = 441
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 91 QQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSL 150
+ GC F+ Y + A +A ALH Q TLPG PIQV+ AD E + KLFVG L
Sbjct: 22 RHMGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSESR---GEDRKLFVGML 78
Query: 151 NKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMR 210
KQ T+++V ++F P+G +++ ++R S+GC FVK+ A AAIN L+ T+
Sbjct: 79 GKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLP 138
Query: 211 GCDQPLTVRFADPKRPR 227
G L V+FAD ++ R
Sbjct: 139 GASSSLVVKFADTEKER 155
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K +ED+R +FE G + E +++ G +GC F+K+ T EA AI
Sbjct: 72 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPD-GTSKGCAFVKFQTHAEAQAAINT 130
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH+ TLPG + V++AD E+ER
Sbjct: 131 LHSSRTLPGASSSLVVKFADTEKER 155
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A+
Sbjct: 358 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 417
Query: 204 NGI 206
NG
Sbjct: 418 NGF 420
>gi|118379755|ref|XP_001023043.1| hypothetical protein TTHERM_00348880 [Tetrahymena thermophila]
gi|89304810|gb|EAS02798.1| hypothetical protein TTHERM_00348880 [Tetrahymena thermophila
SB210]
Length = 474
Score = 106 bits (264), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 102/177 (57%), Gaps = 10/177 (5%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G VPK +E D++ FE+H ++ ++ +I+D+K + QGC F +++ EA++ I
Sbjct: 96 KLFIGQVPKDWQESDLKIFFEKHTSITQIEVIRDQKF-RHQGCAFATFSSMSEAEKVIEF 154
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVE---YKLFVGSLNKQATEKEVEEIFSPYGRV 169
N+H P I +++A GE ERLG E +KL + +L ++ + IF +GR+
Sbjct: 155 YKNKH-FPNSKQEIIMKWASGEEERLGVSENSSHKLIIKNLPALISDASISNIFDNFGRI 213
Query: 170 EDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALN--GIYTMRGCDQPLTVRFADP 223
+ + ++RD + + +G F+KY ++ A A+ LN IY ++ ++ L V F +
Sbjct: 214 QQLKVIRDKKTSECKGHAFIKYYEKESAHLAVQNLNKQNIYLIQ--NKKLKVSFIEK 268
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALN 204
+FV L KQ EK + E+FS YG + + + R + +SRG GFV ++ A AI LN
Sbjct: 384 IFVFHLPKQYNEKNLFELFSGYGNIISITICRKQNGESRGYGFVSFNQPYEAAHAIKELN 443
Query: 205 GIYTM 209
G+ M
Sbjct: 444 GLNLM 448
Score = 46.6 bits (109), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 46/87 (52%)
Query: 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEE 105
V +S KL + ++P + I +F+ G + ++ +I+DKKT + +G FIKY E
Sbjct: 181 VSENSSHKLIIKNLPALISDASISNIFDNFGRIQQLKVIRDKKTSECKGHAFIKYYEKES 240
Query: 106 ADRAIRALHNQHTLPGGVGPIQVRYAD 132
A A++ L+ Q+ ++V + +
Sbjct: 241 AHLAVQNLNKQNIYLIQNKKLKVSFIE 267
Score = 42.7 bits (99), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 45 LVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSE 104
+V G S + +FV +PK E+++ LF +GN+I + + + K+ G+ +G F+ +
Sbjct: 375 VVQGPSHSNIFVFHLPKQYNEKNLFELFSGYGNIISITICR-KQNGESRGYGFVSFNQPY 433
Query: 105 EADRAIRALH 114
EA AI+ L+
Sbjct: 434 EAAHAIKELN 443
>gi|426368243|ref|XP_004051120.1| PREDICTED: CUGBP Elav-like family member 1 [Gorilla gorilla
gorilla]
Length = 551
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 85/177 (48%), Gaps = 48/177 (27%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAI 110
K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ + T + A A
Sbjct: 127 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 186
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
ALHN LPG PIQ++ AD E+
Sbjct: 187 NALHNMKVLPGMHHPIQMKPADSEK----------------------------------- 211
Query: 171 DVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ GC FV ++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 212 -----------NNGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK 257
>gi|151936113|gb|ABS18833.1| ELAV-type RNA binding protein variant B [Caenorhabditis elegans]
Length = 193
Score = 105 bits (261), Expect = 1e-19, Method: Composition-based stats.
Identities = 55/144 (38%), Positives = 86/144 (59%), Gaps = 5/144 (3%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
PSP D + K+FVG +P+ E D R LFE++G+V +++DK T +GCCF+ +
Sbjct: 45 PSPSEPDTDAI-KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVE 160
++A A ALHN + G P+Q++ AD E E KLF+G L+K+ E+ +
Sbjct: 104 YHRKDAIEAQGALHNIKVIEGMHHPVQMKPADTENRN----ERKLFIGQLSKKHNEENLR 159
Query: 161 EIFSPYGRVEDVYLMRDELKQSRG 184
EIF+ +G +ED ++RD+ +SRG
Sbjct: 160 EIFAKFGHIEDCSVLRDQDGKSRG 183
Score = 54.7 bits (130), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINA 202
K+FVG + +Q E + +F YG V ++RD+ Q S+GC FV + HR A+ A A
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGA 115
Query: 203 LNGIYTMRGCDQPLTVRFAD 222
L+ I + G P+ ++ AD
Sbjct: 116 LHNIKVIEGMHHPVQMKPAD 135
>gi|351705755|gb|EHB08674.1| CUG-BP- and ETR-3-like factor 6, partial [Heterocephalus glaber]
Length = 393
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 74/134 (55%), Gaps = 3/134 (2%)
Query: 94 GCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQ 153
GC F+ Y + A +A ALH Q TLPG PIQV+ A E + KLFVG L KQ
Sbjct: 1 GCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQ 57
Query: 154 ATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCD 213
E++V +F P+G +E+ ++R S+GC FVK+ + A AAI L+G TM G
Sbjct: 58 QGEEDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSQTMAGAS 117
Query: 214 QPLTVRFADPKRPR 227
L V+ AD R R
Sbjct: 118 SSLVVKLADTDRER 131
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K EED+R LF+ G++ E +++ G +GC F+K+ + EA AI+
Sbjct: 48 KLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPD-GTSKGCAFVKFGSQGEAQAAIQG 106
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH T+ G + V+ AD +RER
Sbjct: 107 LHGSQTMAGASSSLVVKLADTDRER 131
>gi|195117928|ref|XP_002003497.1| GI17946 [Drosophila mojavensis]
gi|193914072|gb|EDW12939.1| GI17946 [Drosophila mojavensis]
Length = 580
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 87/175 (49%), Gaps = 48/175 (27%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
K+FVG +PKT E +R LFE+ G V + +++DK T
Sbjct: 301 KMFVGQIPKTWDELKLRRLFEQFGRVHTLNVLRDKVTSI--------------------- 339
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
RER KLFVG LNK+ TE +V ++F+ +G +E+
Sbjct: 340 ---------------------SRER------KLFVGMLNKKYTEADVRQLFTGHGTIEEC 372
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++RD++ QS+GC FV ++ + A+ AI AL+ TM GC PL V+FAD ++ +
Sbjct: 373 TVLRDQVGQSKGCAFVTFATKQNAIGAIKALHQSQTMEGCSAPLVVKFADTQKEK 427
>gi|194385422|dbj|BAG65088.1| unnamed protein product [Homo sapiens]
gi|194389686|dbj|BAG61804.1| unnamed protein product [Homo sapiens]
Length = 159
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 92/150 (61%), Gaps = 11/150 (7%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 11 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 64
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 65 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKS--NAVEDRKLFIGMVSKKCNEN 122
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGF 187
++ +FSP+G++E+ ++R SRG F
Sbjct: 123 DIRVMFSPFGQIEECRILRGPDGLSRGLLF 152
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EKE++E+F PYG V + ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
NAL+ I T+ G P+ ++ AD ++ + R
Sbjct: 77 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDR 108
>gi|348583729|ref|XP_003477625.1| PREDICTED: CUGBP Elav-like family member 6-like [Cavia porcellus]
Length = 472
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 73/133 (54%), Gaps = 3/133 (2%)
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQA 154
C F+ Y + A +A ALH Q TLPG PIQV+ A E + KLFVG L KQ
Sbjct: 81 CAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQQ 137
Query: 155 TEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQ 214
E++V +F P+G +E+ ++R S+GC FVK+ + A AAI L+G TM G
Sbjct: 138 GEEDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMAGASS 197
Query: 215 PLTVRFADPKRPR 227
L V+ AD R R
Sbjct: 198 SLVVKLADTDRER 210
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K EED+R LF+ G++ E +++ G +GC F+K+ + EA AI+
Sbjct: 127 KLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPD-GTSKGCAFVKFGSQGEAQAAIQG 185
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH T+ G + V+ AD +RER
Sbjct: 186 LHGSRTMAGASSSLVVKLADTDRER 210
>gi|432119145|gb|ELK38360.1| CUGBP Elav-like family member 6 [Myotis davidii]
Length = 416
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 74/134 (55%), Gaps = 3/134 (2%)
Query: 94 GCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQ 153
GC F+ Y + A +A ALH Q TLPG PIQV+ A E + KLFVG L KQ
Sbjct: 15 GCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR---GEDRKLFVGMLGKQ 71
Query: 154 ATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCD 213
E +V +F P+G +E+ ++R S+GC FVK+ + A AAI +L+G TM G
Sbjct: 72 QGEDDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTMAGAS 131
Query: 214 QPLTVRFADPKRPR 227
L V+ AD R R
Sbjct: 132 SSLVVKLADTDRER 145
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K E+D+R LF+ G++ E +++ G +GC F+K+ + EA AI++
Sbjct: 62 KLFVGMLGKQQGEDDVRRLFQPFGHIEECTVLRSPD-GTSKGCAFVKFGSQGEAQAAIQS 120
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH T+ G + V+ AD +RER
Sbjct: 121 LHGSRTMAGASSSLVVKLADTDRER 145
>gi|402593619|gb|EJW87546.1| hypothetical protein WUBG_01540 [Wuchereria bancrofti]
Length = 149
Score = 103 bits (256), Expect = 4e-19, Method: Composition-based stats.
Identities = 54/123 (43%), Positives = 75/123 (60%), Gaps = 3/123 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D+R LFE G + E ++KDK TG +GC F+ Y + A R A
Sbjct: 27 KLFVGQIPRNLEEKDLRHLFETFGKIYEFTILKDKYTGLHKGCAFLTYCHRDSAIRCQAA 86
Query: 113 LHNQHTLPGGVGPIQVRYADGERE---RLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRV 169
LH+Q TLPG +QV+ AD E A E KLFVG L+KQ E +V +F+P+G +
Sbjct: 87 LHDQKTLPGMNRAMQVKPADNESRPDSPKNAEERKLFVGMLSKQHNEDDVRSLFAPFGVI 146
Query: 170 EDV 172
++V
Sbjct: 147 DEV 149
Score = 54.7 bits (130), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINA 202
KLFVG + + EK++ +F +G++ + +++D+ +GC F+ Y HRD A+ A
Sbjct: 27 KLFVGQIPRNLEEKDLRHLFETFGKIYEFTILKDKYTGLHKGCAFLTYCHRDSAIRCQAA 86
Query: 203 LNGIYTMRGCDQPLTVRFAD----PKRPRPGDSR 232
L+ T+ G ++ + V+ AD P P+ + R
Sbjct: 87 LHDQKTLPGMNRAMQVKPADNESRPDSPKNAEER 120
>gi|395546429|ref|XP_003775090.1| PREDICTED: uncharacterized protein LOC100934042 [Sarcophilus
harrisii]
Length = 819
Score = 103 bits (256), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 91/173 (52%), Gaps = 7/173 (4%)
Query: 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRA 109
S L + +P++ EE++R LF G + L++D+ TGQ G FI Y +A+RA
Sbjct: 501 SKTNLIINYLPQSMTEEELRSLFARVGKIQSCKLVRDRVTGQSLGYGFIDYVHPRDAERA 560
Query: 110 IRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRV 169
+ L+ P I+V YA + + L++ L K T+KE+E +FSPYG +
Sbjct: 561 VCLLNGLQCPPKT---IKVSYARPNSSSIR--DANLYINGLPKNMTQKELEHLFSPYGHI 615
Query: 170 EDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221
++ D+ SRG GF++++ + A AI ALNG G +PL VRFA
Sbjct: 616 ITSRILTDKASGTSRGVGFIRFNMKSEAEEAIKALNGQKPC-GILEPLVVRFA 667
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L++ +PK ++++ LF +G++I ++ DK +G +G FI++ EA+ AI+
Sbjct: 589 ANLYINGLPKNMTQKELEHLFSPYGHIITSRILTDKASGTSRGVGFIRFNMKSEAEEAIK 648
Query: 112 ALHNQHTLPGGV-GPIQVRYADGERE 136
AL+ Q P G+ P+ VR+A + +
Sbjct: 649 ALNGQK--PCGILEPLVVRFAHNQTQ 672
>gi|432944122|ref|XP_004083333.1| PREDICTED: CUGBP Elav-like family member 2-like [Oryzias latipes]
Length = 578
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 89/147 (60%), Gaps = 11/147 (7%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 50 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFV 103
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TL G PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 104 TFYTRKAALEAQNALHNIKTLTGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 161
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRG 184
++ +FS +G++E+ ++R SRG
Sbjct: 162 DIRVMFSAFGQIEECRILRGPDGLSRG 188
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 72/127 (56%), Gaps = 13/127 (10%)
Query: 119 LPGGVGPIQVRYADGERERL-GAVEY---------KLFVGSLNKQATEKEVEEIFSPYGR 168
+PG Q+ +++G ++ GA+E+ K+FVG + + +EKE++E+F PYG
Sbjct: 21 VPGDRLNKQLLFSNGTAGKMNGALEHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGA 80
Query: 169 VEDVYLMRDELK---QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKR 225
V + ++RD + QS+GC FV + R AL A NAL+ I T+ G P+ ++ AD ++
Sbjct: 81 VYQINILRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLTGMHHPIQMKPADSEK 140
Query: 226 PRPGDSR 232
+ R
Sbjct: 141 SNAVEDR 147
Score = 38.9 bits (89), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 45 LVDGSSF------AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFI 98
L+D S F A LF+ +P+ ++DI +F GNV+ + DK+T + F+
Sbjct: 480 LLDISHFSYGPEGANLFIYHLPQEFGDQDILQMFMPFGNVVSAKVFIDKQTNLSKCFGFV 539
Query: 99 KYATSEEADRAIRALH 114
Y A AI+A++
Sbjct: 540 SYDNPVSAQAAIQAMN 555
>gi|390338613|ref|XP_003724811.1| PREDICTED: CUGBP Elav-like family member 3-A-like isoform 1
[Strongylocentrotus purpuratus]
Length = 469
Score = 102 bits (254), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 83/176 (47%), Gaps = 53/176 (30%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D+RP+FE+ G + E+ +++D+ TG +GC F+ Y E A RA +A
Sbjct: 49 KLFVGQIPRNLEEKDLRPIFEDFGRIYELTVLRDRFTGVHKGCAFLTYCDRESAIRAQKA 108
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG +QV+ AD E
Sbjct: 109 LHEQKTLPGMTRALQVKPADSE-------------------------------------- 130
Query: 173 YLMRDELKQSR-GCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
SR GC FVK+S R A+ AIN++N + L V+FAD ++ R
Sbjct: 131 ---------SRGGCAFVKFSTRKEAVGAINSIN-----MSANPNLVVKFADTEKER 172
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINA 202
KLFVG + + EK++ IF +GR+ ++ ++RD +GC F+ Y R+ A+ A A
Sbjct: 49 KLFVGQIPRNLEEKDLRPIFEDFGRIYELTVLRDRFTGVHKGCAFLTYCDRESAIRAQKA 108
Query: 203 LNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTF 237
L+ T+ G + L V+ AD +SR G F
Sbjct: 109 LHEQKTLPGMTRALQVKPAD------SESRGGCAF 137
>gi|195161932|ref|XP_002021810.1| GL26299 [Drosophila persimilis]
gi|194103610|gb|EDW25653.1| GL26299 [Drosophila persimilis]
Length = 678
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 92/171 (53%), Gaps = 7/171 (4%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
L V +P+T +++IR LF G V LI+DK TGQ G F+ Y E+A++AI A
Sbjct: 111 NLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINA 170
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
L+ L I+V A E + L+V L K T+ ++E +FSPYG++
Sbjct: 171 LNG---LRLQNKTIKVSIARPSSESIKGAN--LYVSGLPKNMTQSDLESLFSPYGKIITS 225
Query: 173 YLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D + S+G GF+++ R A AI LNG T + +P+TV+FA+
Sbjct: 226 RILCDNITGLSKGVGFIRFDQRFEADRAIKELNGT-TPKNSTEPITVKFAN 275
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
PS + + G A L+V +PK + D+ LF +G +I ++ D TG +G FI++
Sbjct: 188 PSSESIKG---ANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITGLSKGVGFIRF 244
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYAD 132
EADRAI+ L N T PI V++A+
Sbjct: 245 DQRFEADRAIKEL-NGTTPKNSTEPITVKFAN 275
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L + E + ++F P+G V+ V ++RD + + +G GFV ++ + A+ AI
Sbjct: 356 WCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQ 415
Query: 202 ALNGIYTM 209
+LNG YT+
Sbjct: 416 SLNG-YTL 422
>gi|442625619|ref|NP_001259974.1| RNA-binding protein 9, isoform J [Drosophila melanogaster]
gi|440213243|gb|AGB92511.1| RNA-binding protein 9, isoform J [Drosophila melanogaster]
Length = 684
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 92/171 (53%), Gaps = 7/171 (4%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
L V +P+T +++IR LF G V LI+DK TGQ G F+ Y E+A++AI A
Sbjct: 111 NLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINA 170
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
L+ L I+V A E + L+V L K T+ ++E +FSPYG++
Sbjct: 171 LNG---LRLQNKTIKVSIARPSSESIKGAN--LYVSGLPKNMTQSDLESLFSPYGKIITS 225
Query: 173 YLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D + S+G GF+++ R A AI LNG T + +P+TV+FA+
Sbjct: 226 RILCDNITGLSKGVGFIRFDQRFEADRAIKELNGT-TPKNSTEPITVKFAN 275
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
PS + + G A L+V +PK + D+ LF +G +I ++ D TG +G FI++
Sbjct: 188 PSSESIKG---ANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITGLSKGVGFIRF 244
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYAD 132
EADRAI+ L N T PI V++A+
Sbjct: 245 DQRFEADRAIKEL-NGTTPKNSTEPITVKFAN 275
Score = 44.7 bits (104), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L E + ++F P+G V+ V ++RD + + +G GFV ++ + A+ AI
Sbjct: 356 WCIFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQ 415
Query: 202 ALNGIYTMRGCDQPLTVRFADPKR 225
+LNG YT+ ++ L V F K
Sbjct: 416 SLNG-YTL--GNRVLQVSFKTNKN 436
>gi|156366101|ref|XP_001626979.1| predicted protein [Nematostella vectensis]
gi|156213874|gb|EDO34879.1| predicted protein [Nematostella vectensis]
Length = 335
Score = 99.8 bits (247), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 93/177 (52%), Gaps = 12/177 (6%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
L + VP + +EDI+ +F GNV LI+D+ TGQ G F+ Y ++A++A+R +
Sbjct: 12 LIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREM 71
Query: 114 HNQHTLPGGVGPIQVRYADGERERLGAVEYK---LFVGSLNKQATEKEVEEIFSPYGRVE 170
+ +Q + R + E K L++ L K E+EVE +F P+G++
Sbjct: 72 NGAR--------LQNKTLKVSFARPSSTEIKNANLYISGLPKDMKEEEVEALFKPFGKII 123
Query: 171 DVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+++D + RG GFV++ R A AI+ LN T+ G + LTV+FA+P R
Sbjct: 124 TSKVLKDVSGEGRGTGFVRFDKRCEAQTAIDDLNN-KTLPGTNVKLTVKFANPPNSR 179
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L++ +PK +EE++ LF+ G +I ++KD +G+ +G F+++ EA AI
Sbjct: 96 ANLYISGLPKDMKEEEVEALFKPFGKIITSKVLKD-VSGEGRGTGFVRFDKRCEAQTAID 154
Query: 112 ALHNQHTLPGGVGPIQVRYAD 132
L+N+ TLPG + V++A+
Sbjct: 155 DLNNK-TLPGTNVKLTVKFAN 174
Score = 43.9 bits (102), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINA 202
+ +FV L ++AT + ++FSPYG + ++ ELK +G GFV S+ + A AI
Sbjct: 255 WCIFVYGLPQEATPLFLYKLFSPYGAITNI-----ELKLDKGYGFVNMSNYEEACHAICC 309
Query: 203 LNG 205
LNG
Sbjct: 310 LNG 312
>gi|302830592|ref|XP_002946862.1| hypothetical protein VOLCADRAFT_72841 [Volvox carteri f.
nagariensis]
gi|300267906|gb|EFJ52088.1| hypothetical protein VOLCADRAFT_72841 [Volvox carteri f.
nagariensis]
Length = 450
Score = 99.8 bits (247), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 94/182 (51%), Gaps = 9/182 (4%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
K+FVG VP ++ + LF ++G + + ALI + G+ +GC + Y EA+ AI
Sbjct: 16 KVFVGQVPHEVTQDQVFALFSKYGTIKKCALITGQD-GRSKGCAMVTYDRWAEAELAIEH 74
Query: 113 LHNQHTLPGGVGPIQVRYADGERER-----LGAVEYKLFVGSLNKQATEKEVEEIFSPYG 167
+ L GG + V++AD R R +G KLFVG + + TE+ + +F+ YG
Sbjct: 75 ENGTANLGGGR-TLLVKFADPPRGRGDGPVMGVAPKKLFVGQIPQHTTEQHIRTLFAAYG 133
Query: 168 RVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ DV+++ + GC FV + A A+ +LNG + G P+ V+FAD K
Sbjct: 134 TITDVHVLNK--GNAPGCAFVTFERWSQAENAMLSLNGQTLIEGATTPMVVKFADAKVVD 191
Query: 228 PG 229
PG
Sbjct: 192 PG 193
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G VP A E D+ P+F GN++E+ +++ + G+ +GC F+ Y +A++AIR
Sbjct: 361 KLFIGQVPFEANEADLWPIFSPLGNILELVILRHQ--GKSKGCAFLTYENRTDAEKAIRT 418
Query: 113 LHNQHTL 119
L +Q ++
Sbjct: 419 LDSQVSV 425
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 8/99 (8%)
Query: 37 GRG-GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGC 95
GRG GP V G + KLFVG +P+ E+ IR LF +G + +V ++ G GC
Sbjct: 97 GRGDGP----VMGVAPKKLFVGQIPQHTTEQHIRTLFAAYGTITDVHVLNK---GNAPGC 149
Query: 96 CFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGE 134
F+ + +A+ A+ +L+ Q + G P+ V++AD +
Sbjct: 150 AFVTFERWSQAENAMLSLNGQTLIEGATTPMVVKFADAK 188
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINAL 203
K+FVG + + T+ +V +FS YG ++ L+ + +S+GC V Y A AI
Sbjct: 16 KVFVGQVPHEVTQDQVFALFSKYGTIKKCALITGQDGRSKGCAMVTYDRWAEAELAIEHE 75
Query: 204 NGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFG 238
NG + G + L V+FADP R R GD GP G
Sbjct: 76 NGTANLGG-GRTLLVKFADPPRGR-GD---GPVMG 105
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINA 202
+KLF+G + +A E ++ IFSP G + ++ ++R + K S+GC F+ Y +R A AI
Sbjct: 360 WKLFIGQVPFEANEADLWPIFSPLGNILELVILRHQGK-SKGCAFLTYENRTDAEKAIRT 418
Query: 203 LNGIYTM----RGCDQPLTVRFAD 222
L+ ++ RG + LTV++A+
Sbjct: 419 LDSQVSVTSDPRG--RLLTVKYAN 440
>gi|383865034|ref|XP_003707981.1| PREDICTED: ELAV-like protein 2-like [Megachile rotundata]
Length = 502
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 91/323 (28%), Positives = 145/323 (44%), Gaps = 42/323 (13%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
L V +P++ +++IR LF G V LI+DK TGQ G F+ Y SE+A++AI L
Sbjct: 30 LIVNYLPQSMTQDEIRSLFSSIGEVESCKLIRDKLTGQSLGYGFVNYHRSEDAEKAINTL 89
Query: 114 HNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVY 173
+ L I+V YA E + L+V L K T++++E +FSPYGR+
Sbjct: 90 NG---LRLQNKTIKVSYARPSSEAIKGAN--LYVSGLPKNMTQQDLENLFSPYGRIITSR 144
Query: 174 LMRDELKQ--------------SRGCGFVKYSHRDMALAAINALNGIYTM-RGCDQPLTV 218
++ D + S+G GF+++ R A AI LNG T+ +G +P+TV
Sbjct: 145 ILCDNITVRQFVTGGGDYLPGLSKGVGFIRFDQRVEAERAIQELNG--TIPKGSSEPITV 202
Query: 219 RFADPKRPRPGDSRSGPTFGGPGFGPRFQPPSPRPPPNFGDPITDQIPQNAWHPMSPRNM 278
+FA+ P+ P +P+ FG PI + + P+SP +
Sbjct: 203 KFAN-----------NPSNNNKAIPPLAAYLTPQATRRFGGPIHHPTGRFRYIPLSPLSS 251
Query: 279 GPLSNPGIRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQAP 338
+ I + P +GDL A+ LPG A++ + + PE++
Sbjct: 252 TGKAMLAINKGLQRYSPLAGDL--------LANSMLPGNAMNGSGWCIFVYNLAPETEEN 303
Query: 339 SLGQQISPLQKPLQSPQHMPPLQ 361
L Q P +QS + + LQ
Sbjct: 304 VLWQLFGPF-GAVQSVKVIRDLQ 325
Score = 46.6 bits (109), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L + E + ++F P+G V+ V ++RD + + +G GFV ++ D A+ AI +L
Sbjct: 291 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 350
Query: 204 NGIYTMRGCDQPLTVRFADPK 224
NG YT+ ++ L V F K
Sbjct: 351 NG-YTL--GNRVLQVSFKTNK 368
>gi|194758473|ref|XP_001961486.1| GF14992 [Drosophila ananassae]
gi|190615183|gb|EDV30707.1| GF14992 [Drosophila ananassae]
Length = 660
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 92/176 (52%), Gaps = 12/176 (6%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
L V +P+T +++IR LF G V LI+DK TGQ G F+ Y E+A++AI A
Sbjct: 99 NLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINA 158
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
L+ L I+V A E + L+V L K T+ ++E +FSPYG++
Sbjct: 159 LNG---LRLQNKTIKVSIARPSSESIKGAN--LYVSGLPKNMTQSDLESLFSPYGKIITS 213
Query: 173 YLMRDELKQ------SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D + S+G GF+++ R A AI LNG T + +P+TV+FA+
Sbjct: 214 RILCDNITDEHAQGLSKGVGFIRFDQRFEADRAIKELNGT-TPKNSTEPITVKFAN 268
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKT-----GQQQGC 95
PS + + G A L+V +PK + D+ LF +G +I ++ D T G +G
Sbjct: 176 PSSESIKG---ANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITDEHAQGLSKGV 232
Query: 96 CFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYAD 132
FI++ EADRAI+ L N T PI V++A+
Sbjct: 233 GFIRFDQRFEADRAIKEL-NGTTPKNSTEPITVKFAN 268
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L + E + ++F P+G V+ V ++RD + + +G GFV ++ + A+ AI
Sbjct: 349 WCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQ 408
Query: 202 ALNGIYTM 209
+LNG YT+
Sbjct: 409 SLNG-YTL 415
>gi|384247531|gb|EIE21017.1| RNA-binding domain-containing protein, partial [Coccomyxa
subellipsoidea C-169]
Length = 344
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 98/195 (50%), Gaps = 12/195 (6%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
+LFVG VP REED+ PLF G V + ++K G+ +GC + + +A+ A A
Sbjct: 14 RLFVGQVPSDVREEDLWPLFTPFGTVRNLHMLKGSD-GKPRGCAMVLFQRWAQAEAAAEA 72
Query: 113 LHNQHTLPGG--VGPIQVRYAD------GERERLGAVEYKLFVGSLNKQATEKEVEEIFS 164
L Q L G P+ V +A+ G+ G KLFVG + + TE + +F
Sbjct: 73 LDGQLVLETGGQRKPLVVHFANPRRAPPGQPAEPGIAPRKLFVGQVPRDVTEDTLRPLFE 132
Query: 165 PYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224
PYG +E + ++R QS GC FV++ A A+ A NG + + PL V+FAD K
Sbjct: 133 PYGDIEHINILRTHRGQSAGCAFVQFQKWAQAEVAMEAHNGKTRLGNSEVPLVVKFADAK 192
Query: 225 RPRPGDSRSGPTFGG 239
R D+ +G GG
Sbjct: 193 RK---DAVAGQMHGG 204
>gi|403335220|gb|EJY66784.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 307
Score = 99.0 bits (245), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 105/189 (55%), Gaps = 15/189 (7%)
Query: 39 GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFI 98
GGP L + + A L+VG++ EE + LF + G ++ V + +DK T + G F+
Sbjct: 10 GGP---LFERNQEATLYVGNLDTKVNEELVWELFLQCGAIVNVHIPRDKVTNEHSGYGFV 66
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYA--DGERERLGAVEYKLFVGSLNKQATE 156
++ T E+AD AI+ +H L G PI+V A D + +GA +FVG+L++ E
Sbjct: 67 EFKTEEDADYAIKIMH-MVKLFG--KPIKVNKASQDKRTQEVGA---NVFVGNLHEDVDE 120
Query: 157 KEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQP 215
K + ++FS +G V +MRD E + S+ GFV Y + + + A+I A+NG Y C +P
Sbjct: 121 KMLRDVFSSFGIVLSTKIMRDPETQVSKRYGFVSYDNFESSDASIQAMNGQYL---CGKP 177
Query: 216 LTVRFADPK 224
+ V +A K
Sbjct: 178 IDVSYAYKK 186
>gi|195116106|ref|XP_002002597.1| GI11879 [Drosophila mojavensis]
gi|193913172|gb|EDW12039.1| GI11879 [Drosophila mojavensis]
Length = 724
Score = 99.0 bits (245), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 92/175 (52%), Gaps = 12/175 (6%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
L V +P+T +++IR LF G V LI+DK TGQ G F+ Y E+A++AI AL
Sbjct: 126 LIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINAL 185
Query: 114 HNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVY 173
+ L I+V A E + L+V L K T+ ++E +FSPYG++
Sbjct: 186 NG---LRLQNKTIKVSIARPSSESIKGAN--LYVSGLPKNMTQSDLESLFSPYGKIITSR 240
Query: 174 LMRDELKQ------SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D + S+G GF+++ R A AI LNG T + +P+TV+FA+
Sbjct: 241 ILCDNITDEHAAGLSKGVGFIRFDQRFEADRAIKELNGT-TPKNSTEPITVKFAN 294
Score = 52.4 bits (124), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKT-----GQQQGC 95
PS + + G A L+V +PK + D+ LF +G +I ++ D T G +G
Sbjct: 202 PSSESIKG---ANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITDEHAAGLSKGV 258
Query: 96 CFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYAD 132
FI++ EADRAI+ L N T PI V++A+
Sbjct: 259 GFIRFDQRFEADRAIKEL-NGTTPKNSTEPITVKFAN 294
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L + E + ++F P+G V+ V ++RD + + +G GFV ++ + A+ AI
Sbjct: 375 WCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQ 434
Query: 202 ALNGIYTM 209
+LNG YT+
Sbjct: 435 SLNG-YTL 441
>gi|198473023|ref|XP_002133161.1| GA28809 [Drosophila pseudoobscura pseudoobscura]
gi|198139264|gb|EDY70563.1| GA28809 [Drosophila pseudoobscura pseudoobscura]
Length = 692
Score = 99.0 bits (245), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 92/176 (52%), Gaps = 12/176 (6%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
L V +P+T +++IR LF G V LI+DK TGQ G F+ Y E+A++AI A
Sbjct: 120 NLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINA 179
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
L+ L I+V A E + L+V L K T+ ++E +FSPYG++
Sbjct: 180 LNG---LRLQNKTIKVSIARPSSESIKGAN--LYVSGLPKNMTQSDLESLFSPYGKIITS 234
Query: 173 YLMRDELKQ------SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D + S+G GF+++ R A AI LNG T + +P+TV+FA+
Sbjct: 235 RILCDNITDEHAPGLSKGVGFIRFDQRFEADRAIKELNGT-TPKNSTEPITVKFAN 289
Score = 52.4 bits (124), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKT-----GQQQGC 95
PS + + G A L+V +PK + D+ LF +G +I ++ D T G +G
Sbjct: 197 PSSESIKG---ANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITDEHAPGLSKGV 253
Query: 96 CFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYAD 132
FI++ EADRAI+ L N T PI V++A+
Sbjct: 254 GFIRFDQRFEADRAIKEL-NGTTPKNSTEPITVKFAN 289
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L + E + ++F P+G V+ V ++RD + + +G GFV ++ + A+ AI
Sbjct: 370 WCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQ 429
Query: 202 ALNGIYTM 209
+LNG YT+
Sbjct: 430 SLNG-YTL 436
>gi|426253953|ref|XP_004020653.1| PREDICTED: CUGBP Elav-like family member 4 [Ovis aries]
Length = 513
Score = 99.0 bits (245), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 94/203 (46%), Gaps = 37/203 (18%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 23 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 82
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYK 144
KD+ TG +G F +++ A + RA+H LPG PIQV+ AD E R G+
Sbjct: 83 KDRFTGMHKGFAFKTNCSTDSAFKVGRAVHKMKELPGMNRPIQVKPADSE-SRGGS---- 137
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALN 204
S +Q + C FVKYS A AAINAL+
Sbjct: 138 ----SCLRQPPSR---------------------------CAFVKYSSHAEAQAAINALH 166
Query: 205 GIYTMRGCDQPLTVRFADPKRPR 227
G TM G L V+FAD + R
Sbjct: 167 GSQTMPGASSSLVVKFADTDKER 189
>gi|118350408|ref|XP_001008485.1| Splicing factor 3B subunit 4 [Tetrahymena thermophila]
gi|89290252|gb|EAR88240.1| Splicing factor 3B subunit 4 [Tetrahymena thermophila SB210]
Length = 325
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 110/194 (56%), Gaps = 15/194 (7%)
Query: 44 DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATS 103
++ + +S A L+VG + + +E + LF + G VI V L +DK TG+ QG F++Y T
Sbjct: 4 NISERNSDATLYVGGLDQKVTQEVLWELFSQCGIVINVHLPRDKITGEHQGYGFVEYKTE 63
Query: 104 EEADRAIRALHNQHTLPGGVGPIQVRYA--DGERERLGAVEYKLFVGSLNKQATEKEVEE 161
E+AD AI+ LH L G PI+V A D + +GA +F+G+L+ TE +++E
Sbjct: 64 EDADYAIKILH-LIKLYG--KPIKVNKASQDKRTQEVGA---NIFIGNLDPSVTEMQLQE 117
Query: 162 IFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220
FS +G + ++RD + QS+G F+ Y + + + AI+A+NG Y Q ++V++
Sbjct: 118 TFSTFGLIIGRRIVRDSDNNQSKGYAFISYDNFESSDNAISAMNGQYY---GSQKISVQY 174
Query: 221 A---DPKRPRPGDS 231
A D K R G +
Sbjct: 175 AFKKDSKGERHGSA 188
>gi|195342135|ref|XP_002037657.1| GM18380 [Drosophila sechellia]
gi|194132507|gb|EDW54075.1| GM18380 [Drosophila sechellia]
Length = 650
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 92/177 (51%), Gaps = 12/177 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+T +++IR LF G V LI+DK TGQ G F+ Y E+A++AI
Sbjct: 316 TNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAIN 375
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
AL+ L I+V A E + L+V L K T+ ++E +FSPYG++
Sbjct: 376 ALNG---LRLQNKTIKVSIARPSSESIKGA--NLYVSGLPKNMTQSDLESLFSPYGKIIT 430
Query: 172 VYLMRDELKQ------SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D + S+G GF+++ R A AI LNG T + +P+TV+FA+
Sbjct: 431 SRILCDNITDEHAAGLSKGVGFIRFDQRFEADRAIKELNGT-TPKNSTEPITVKFAN 486
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKT-----GQQQGC 95
PS + + G A L+V +PK + D+ LF +G +I ++ D T G +G
Sbjct: 394 PSSESIKG---ANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITDEHAAGLSKGV 450
Query: 96 CFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYAD 132
FI++ EADRAI+ L N T PI V++A+
Sbjct: 451 GFIRFDQRFEADRAIKEL-NGTTPKNSTEPITVKFAN 486
Score = 45.4 bits (106), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L + E + ++F P+G V+ V ++RD + + +G GFV ++ + A+ AI
Sbjct: 567 WCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQ 626
Query: 202 ALNGIYTMRGCDQPLTVRFADPK 224
+LNG YT+ ++ L V F K
Sbjct: 627 SLNG-YTL--GNRVLQVSFKTNK 646
>gi|255550690|ref|XP_002516394.1| spliceosome associated protein, putative [Ricinus communis]
gi|223544492|gb|EEF46011.1| spliceosome associated protein, putative [Ricinus communis]
Length = 376
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 97/175 (55%), Gaps = 9/175 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A +VG++ EE + LF + G V+ V + KD+ T QG F+++ + E+AD AI+
Sbjct: 25 ATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGR-VE 170
+ N L G PI+V A +++ L V LF+G+L+ EK + + FS +G V
Sbjct: 85 IM-NMIKLFG--KPIRVNKASQDKKSLD-VGANLFIGNLDPDVDEKLLHDTFSAFGVIVT 140
Query: 171 DVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224
+ +MRD E SRG GF+ Y D + AAI A+NG Y C++ +TV +A K
Sbjct: 141 NPKIMRDPETGNSRGFGFISYDSFDASDAAIEAMNGQYL---CNRQITVSYAYKK 192
>gi|124248380|gb|ABM92810.1| IP15810p [Drosophila melanogaster]
Length = 647
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 92/177 (51%), Gaps = 12/177 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+T +++IR LF G V LI+DK TGQ G F+ Y E+A++AI
Sbjct: 313 TNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAIN 372
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
AL+ L I+V A E + L+V L K T+ ++E +FSPYG++
Sbjct: 373 ALNG---LRLQNKTIKVSIARPSSESIKGAN--LYVSGLPKNMTQSDLESLFSPYGKIIT 427
Query: 172 VYLMRDELKQ------SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D + S+G GF+++ R A AI LNG T + +P+TV+FA+
Sbjct: 428 SRILCDNITDEHAAGLSKGVGFIRFDQRFEADRAIKELNGT-TPKNSTEPITVKFAN 483
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKT-----GQQQGC 95
PS + + G A L+V +PK + D+ LF +G +I ++ D T G +G
Sbjct: 391 PSSESIKG---ANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITDEHAAGLSKGV 447
Query: 96 CFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYAD 132
FI++ EADRAI+ L N T PI V++A+
Sbjct: 448 GFIRFDQRFEADRAIKEL-NGTTPKNSTEPITVKFAN 483
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L E + ++F P+G V+ V ++RD + + +G GFV ++ + A+ AI
Sbjct: 564 WCIFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQ 623
Query: 202 ALNGIYTMRGCDQPLTVRFADPK 224
+LNG YT+ ++ L V F K
Sbjct: 624 SLNG-YTL--GNRVLQVSFKTNK 643
>gi|19549690|ref|NP_599125.1| RNA-binding protein 9, isoform E [Drosophila melanogaster]
gi|19549692|ref|NP_599126.1| RNA-binding protein 9, isoform F [Drosophila melanogaster]
gi|62471589|ref|NP_001014462.1| RNA-binding protein 9, isoform G [Drosophila melanogaster]
gi|221330652|ref|NP_476936.3| RNA-binding protein 9, isoform H [Drosophila melanogaster]
gi|158227|gb|AAC13646.1| RNA-binding protein [Drosophila melanogaster]
gi|22945352|gb|AAN10402.1| RNA-binding protein 9, isoform E [Drosophila melanogaster]
gi|22945353|gb|AAN10403.1| RNA-binding protein 9, isoform F [Drosophila melanogaster]
gi|40714603|gb|AAR88559.1| GH26440p [Drosophila melanogaster]
gi|61678275|gb|AAX52651.1| RNA-binding protein 9, isoform G [Drosophila melanogaster]
gi|220901921|gb|AAN10401.3| RNA-binding protein 9, isoform H [Drosophila melanogaster]
gi|220951536|gb|ACL88311.1| Rbp9-PE [synthetic construct]
Length = 439
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 92/170 (54%), Gaps = 7/170 (4%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
L V +P+T +++IR LF G V LI+DK TGQ G F+ Y E+A++AI AL
Sbjct: 112 LIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINAL 171
Query: 114 HNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVY 173
+ L I+V A E + L+V L K T+ ++E +FSPYG++
Sbjct: 172 NG---LRLQNKTIKVSIARPSSESIKGAN--LYVSGLPKNMTQSDLESLFSPYGKIITSR 226
Query: 174 LMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D + S+G GF+++ R A AI LNG T + +P+TV+FA+
Sbjct: 227 ILCDNITGLSKGVGFIRFDQRFEADRAIKELNGT-TPKNSTEPITVKFAN 275
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
PS + + G A L+V +PK + D+ LF +G +I ++ D TG +G FI++
Sbjct: 188 PSSESIKG---ANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITGLSKGVGFIRF 244
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYAD 132
EADRAI+ L N T PI V++A+
Sbjct: 245 DQRFEADRAIKEL-NGTTPKNSTEPITVKFAN 275
Score = 43.5 bits (101), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L E + ++F P+G V+ V ++RD + + +G GFV ++ + A+ AI
Sbjct: 356 WCIFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQ 415
Query: 202 ALNGIYTMRGCDQPLTVRFADPK 224
+LNG YT+ ++ L V F K
Sbjct: 416 SLNG-YTLG--NRVLQVSFKTNK 435
>gi|332029758|gb|EGI69627.1| ELAV-like protein 2 [Acromyrmex echinatior]
Length = 359
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 139/309 (44%), Gaps = 27/309 (8%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
L V +P++ +++IR LF G V LI+DK +GQ G F+ Y E+A++AI L
Sbjct: 30 LIVNYLPQSMTQDEIRSLFSSIGEVESCKLIRDKLSGQSLGYGFVNYHRPEDAEKAINTL 89
Query: 114 HNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVY 173
+ L I+V YA E + L+V L K ++++E +FSPYGR+
Sbjct: 90 NG---LRLQNKTIKVSYARPSSEAIKGAN--LYVSGLPKNMAQQDLENLFSPYGRIITSR 144
Query: 174 LMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
++ D + S+G GF+++ R A AI LNG +G +P+TV+FA+
Sbjct: 145 ILCDNITGLSKGVGFIRFDQRVEAERAIQELNGTIP-KGSSEPITVKFAN---------- 193
Query: 233 SGPTFGGPGFGPRFQPPSPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQ 292
P+ P +P+ FG PI + + P+SP + + I +
Sbjct: 194 -NPSNNNKAIPPLAAYLAPQATRRFGGPIHHPTGRFRYIPLSPLSSTGKAMLAINKGLQR 252
Query: 293 LPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQAPSLGQQISPLQKPLQ 352
P +GDL A+ LPG ++ + PE++ L Q P +Q
Sbjct: 253 YSPLAGDL--------LANSMLPGNTMNGAGWCIFVYNLAPETEENVLWQLFGPF-GAVQ 303
Query: 353 SPQHMPPLQ 361
S + + LQ
Sbjct: 304 SVKVIRDLQ 312
Score = 45.4 bits (106), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L + E + ++F P+G V+ V ++RD + + +G GFV ++ + A+ AI
Sbjct: 276 WCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYEEAVVAIQ 335
Query: 202 ALNGIYTMRGCDQPLTVRFADPK 224
+LNG YT+ ++ L V F K
Sbjct: 336 SLNG-YTL--GNRVLQVSFKTNK 355
>gi|154341070|ref|XP_001566488.1| putative RNA-binding protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134063811|emb|CAM40000.1| putative RNA-binding protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 619
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 95/195 (48%), Gaps = 23/195 (11%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
LFV + E+D+R LF ++G +I AL++D TG+ G F++Y+T EEA A+ A
Sbjct: 68 NLFVRKLASAVTEDDMRRLFGQYGTIISFALMRDIYTGESLGTAFVRYSTHEEARSAMAA 127
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEY-----KLFVGSLNKQATEKEVEEIFSPYG 167
L + H L G PI +++A E + + KLFV ++ T + + +IFS +G
Sbjct: 128 L-DGHELYG--RPISIQWAKREHDSTPCGDARRKIRKLFVRNIPLDVTARHLRQIFSKFG 184
Query: 168 RVEDVYLMRDE--------------LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCD 213
+ +V L D + Q R F+ + D+A A++ L+ C+
Sbjct: 185 SISNVTLHSDTAPATFRDSNDSSRLISQIRNIAFILFQEDDVAEQAVSVLHNTCPFESCE 244
Query: 214 -QPLTVRFADPKRPR 227
PL V+ A+ R R
Sbjct: 245 GIPLMVKLAEDNRDR 259
>gi|356544204|ref|XP_003540544.1| PREDICTED: splicing factor 3B subunit 4-like [Glycine max]
Length = 364
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 97/172 (56%), Gaps = 9/172 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A +VG++ EE + LF + G V+ V + KD+ T Q QG F+++ + E+AD AI+
Sbjct: 25 ATAYVGNLDPQICEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIK 84
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGR-VE 170
L N L G PI+V A +++ L V LF+G+L+ EK + + FS +G V
Sbjct: 85 VL-NMIKLYG--KPIRVNKASQDKKSLD-VGANLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
Query: 171 DVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221
+ +MRD E SRG GF+ Y + + +AI A+NG Y C++ +TV +A
Sbjct: 141 NPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNGQYL---CNRQITVSYA 189
>gi|195384832|ref|XP_002051116.1| GJ13991 [Drosophila virilis]
gi|194147573|gb|EDW63271.1| GJ13991 [Drosophila virilis]
Length = 725
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 92/176 (52%), Gaps = 12/176 (6%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
L V +P+T +++IR LF G V LI+DK TGQ G F+ Y E+A++AI A
Sbjct: 103 NLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINA 162
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
L+ L I+V A E + L+V L K T+ ++E +FSPYG++
Sbjct: 163 LNG---LRLQNKTIKVSIARPSSESIKGAN--LYVSGLPKNMTQSDLESLFSPYGKIITS 217
Query: 173 YLMRDELKQ------SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D + S+G GF+++ R A AI LNG T + +P+TV+FA+
Sbjct: 218 RILCDNITDEHAAGLSKGVGFIRFDQRFEADRAIKELNGT-TPKNSTEPITVKFAN 272
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKT-----GQQQGC 95
PS + + G A L+V +PK + D+ LF +G +I ++ D T G +G
Sbjct: 180 PSSESIKG---ANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITDEHAAGLSKGV 236
Query: 96 CFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYAD 132
FI++ EADRAI+ L N T PI V++A+
Sbjct: 237 GFIRFDQRFEADRAIKEL-NGTTPKNSTEPITVKFAN 272
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L + E + ++F P+G V+ V ++RD + + +G GFV ++ + A+ AI
Sbjct: 353 WCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQ 412
Query: 202 ALNGIYTM 209
+LNG YT+
Sbjct: 413 SLNG-YTL 419
>gi|398018793|ref|XP_003862561.1| RNA-binding protein, putative [Leishmania donovani]
gi|322500791|emb|CBZ35868.1| RNA-binding protein, putative [Leishmania donovani]
Length = 639
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 96/195 (49%), Gaps = 23/195 (11%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
LFV + E+D+R LFE++G ++ AL++D TG+ G F++Y+T +EA A+ A
Sbjct: 67 NLFVRKLASAVTEDDMRKLFEQYGTIMSFALMRDIHTGESLGTAFVRYSTHDEARAAMAA 126
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVE-----YKLFVGSLNKQATEKEVEEIFSPYG 167
L + L G PI +++A E + + +KLFV ++ T + + +IFS +G
Sbjct: 127 LDGRE-LYG--RPISIQWAKREHDSTPCGDARRKIHKLFVRNIPLDVTARHLRQIFSKFG 183
Query: 168 RVEDVYLMRDE--------------LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCD 213
+ +V L D Q R F+ + D+A A++AL+ C+
Sbjct: 184 SISNVTLHSDTAPAATRDNGDSSRPASQMRNIAFILFQDDDVAEQAVSALHNTCPFDSCE 243
Query: 214 -QPLTVRFADPKRPR 227
PL V+ A+ R R
Sbjct: 244 GIPLMVKLAEDNRDR 258
>gi|170028363|ref|XP_001842065.1| RNA-binding protein [Culex quinquefasciatus]
gi|167874220|gb|EDS37603.1| RNA-binding protein [Culex quinquefasciatus]
Length = 365
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 111/240 (46%), Gaps = 34/240 (14%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
L V +P+ +E+IR LF G V LI+DK TGQ G F+ Y +E+A +AI L
Sbjct: 46 LIVNYLPQQMTQEEIRSLFSSIGEVESCKLIRDKVTGQSLGYGFVNYQRAEDASKAINTL 105
Query: 114 HNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVY 173
+ I+V +A E + L+V L K + ++E +FSPYGR+
Sbjct: 106 NGLRLQN---KQIKVSFARPSSEAIKGAN--LYVSGLPKNMLQSDLESLFSPYGRIITSR 160
Query: 174 LMRDELKQ--------------SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
++ D + S+G GF+++ R A AI LNG +G +P+TV+
Sbjct: 161 ILCDNITARQYASASGEVSPGLSKGVGFIRFDQRTEAEKAIKELNGTIP-KGSTEPITVK 219
Query: 220 FADPKRPRPGDSRSGP---TFGGPGFGPRFQPPSPRPPPNF------GDPITD-QIPQNA 269
FA+ P ++++ P + GP RF P P F GD + + IP NA
Sbjct: 220 FAN----NPSNTKTVPPLAAYLGPQAARRFAGPMHHPTGRFRYSPLAGDLLANSMIPTNA 275
Score = 62.4 bits (150), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 102/248 (41%), Gaps = 72/248 (29%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQ-------- 92
PS + + G A L+V +PK + D+ LF +G +I ++ D T +Q
Sbjct: 122 PSSEAIKG---ANLYVSGLPKNMLQSDLESLFSPYGRIITSRILCDNITARQYASASGEV 178
Query: 93 -----QGCCFIKYATSEEADRAIRALHNQHTLP-GGVGPIQV------------------ 128
+G FI++ EA++AI+ L+ T+P G PI V
Sbjct: 179 SPGLSKGVGFIRFDQRTEAEKAIKELNG--TIPKGSTEPITVKFANNPSNTKTVPPLAAY 236
Query: 129 -------RYADGERERLGAVEYK------------------------LFVGSLNKQATEK 157
R+A G Y +FV +L + E
Sbjct: 237 LGPQAARRFAGPMHHPTGRFRYSPLAGDLLANSMIPTNAIANGSGWCIFVYNLAPETEEN 296
Query: 158 EVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPL 216
+ ++F P+G V+ V +++D + + +G GFV ++ D A+ AI +LNG YT+ ++ L
Sbjct: 297 VLWQLFGPFGAVQSVKVIKDLQTNKCKGFGFVTMTNYDEAVVAIQSLNG-YTLG--NRVL 353
Query: 217 TVRFADPK 224
V F K
Sbjct: 354 QVSFKTNK 361
>gi|195434178|ref|XP_002065080.1| GK14865 [Drosophila willistoni]
gi|194161165|gb|EDW76066.1| GK14865 [Drosophila willistoni]
Length = 725
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 92/177 (51%), Gaps = 12/177 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+T +++IR LF G V LI+DK TGQ G F+ Y E+A++AI
Sbjct: 121 TNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAIN 180
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
AL+ L I+V A E + L+V L K T+ ++E +FSPYG++
Sbjct: 181 ALNG---LRLQNKTIKVSIARPSSESIKGA--NLYVSGLPKNMTQSDLESLFSPYGKIIT 235
Query: 172 VYLMRDELKQ------SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D + S+G GF+++ R A AI LNG T + +P+TV+FA+
Sbjct: 236 SRILCDNITDEHAPGLSKGVGFIRFDQRFEADRAIKELNGT-TPKNSTEPITVKFAN 291
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKT-----GQQQGC 95
PS + + G A L+V +PK + D+ LF +G +I ++ D T G +G
Sbjct: 199 PSSESIKG---ANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITDEHAPGLSKGV 255
Query: 96 CFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYAD 132
FI++ EADRAI+ L N T PI V++A+
Sbjct: 256 GFIRFDQRFEADRAIKEL-NGTTPKNSTEPITVKFAN 291
Score = 43.9 bits (102), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L + E + ++F P+G V+ V ++RD + + +G GFV ++ + A+ AI
Sbjct: 372 WCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQ 431
Query: 202 ALNGIYTM 209
+LNG YT+
Sbjct: 432 SLNG-YTL 438
>gi|195470919|ref|XP_002087754.1| GE18193 [Drosophila yakuba]
gi|194173855|gb|EDW87466.1| GE18193 [Drosophila yakuba]
Length = 446
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 92/175 (52%), Gaps = 12/175 (6%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
L V +P+T +++IR LF G V LI+DK TGQ G F+ Y E+A++AI AL
Sbjct: 114 LIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINAL 173
Query: 114 HNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVY 173
+ L I+V A E + L+V L K T+ ++E +FSPYG++
Sbjct: 174 NG---LRLQNKTIKVSIARPSSESIKGA--NLYVSGLPKNMTQSDLESLFSPYGKIITSR 228
Query: 174 LMRDELKQ------SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D + S+G GF+++ R A AI LNG T + +P+TV+FA+
Sbjct: 229 ILCDNITDEHAAGLSKGVGFIRFDQRFEADRAIKELNGT-TPKNSTEPITVKFAN 282
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKT-----GQQQGC 95
PS + + G A L+V +PK + D+ LF +G +I ++ D T G +G
Sbjct: 190 PSSESIKG---ANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITDEHAAGLSKGV 246
Query: 96 CFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYAD 132
FI++ EADRAI+ L N T PI V++A+
Sbjct: 247 GFIRFDQRFEADRAIKEL-NGTTPKNSTEPITVKFAN 282
Score = 44.7 bits (104), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L + E + ++F P+G V+ V ++RD + + +G GFV ++ + A+ AI
Sbjct: 363 WCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQ 422
Query: 202 ALNGIYTMRGCDQPLTVRFADPK 224
+LNG YT+ ++ L V F K
Sbjct: 423 SLNG-YTLG--NRVLQVSFKTNK 442
>gi|17532863|ref|NP_496057.1| Protein EXC-7 [Caenorhabditis elegans]
gi|3876753|emb|CAA85327.1| Protein EXC-7 [Caenorhabditis elegans]
Length = 456
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 96/186 (51%), Gaps = 7/186 (3%)
Query: 38 RGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCF 97
R +P++ G S L + +P+ +E++R LF G + L++DK TGQ G F
Sbjct: 28 RYCSAPNVDIGESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGF 87
Query: 98 IKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEK 157
+ Y E+A RA+ + + L I+V YA +++ L+V + K T
Sbjct: 88 VNYVREEDALRAVSSFNG---LRLQNKTIKVSYARPSNDQIKG--SNLYVSGIPKSMTLH 142
Query: 158 EVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPL 216
E+E IF P+G++ ++ D + S+G GFV++ +D A AI LNG GC + +
Sbjct: 143 ELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSIP-SGCSEQI 201
Query: 217 TVRFAD 222
TV+FA+
Sbjct: 202 TVKFAN 207
Score = 44.7 bits (104), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINA 202
Y LFV +L+ + + ++FS +G + +V ++RD +Q +G FV S+ A A+ +
Sbjct: 374 YCLFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRDLTQQCKGYAFVSMSNYTEAYNAMLS 433
Query: 203 LNG 205
LNG
Sbjct: 434 LNG 436
>gi|341901304|gb|EGT57239.1| CBN-EXC-7 protein [Caenorhabditis brenneri]
Length = 459
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 99/186 (53%), Gaps = 7/186 (3%)
Query: 38 RGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCF 97
R +P++ G S L + +P+ +E++R LF G + L++DK TGQ G F
Sbjct: 28 RYCTAPNVDIGESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGF 87
Query: 98 IKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEK 157
+ Y +EAD A+RA+ + + L I+V YA +++ L+V + K T
Sbjct: 88 VNYV--QEAD-ALRAVSSFNGLRLQNKTIKVSYARPSNDQIKGSN--LYVSGIPKSMTLH 142
Query: 158 EVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPL 216
E+E IF P+G++ ++ D + S+G GFV++ +D A AI LNG GC + +
Sbjct: 143 ELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSIP-TGCSEQI 201
Query: 217 TVRFAD 222
TV+FA+
Sbjct: 202 TVKFAN 207
>gi|194855197|ref|XP_001968493.1| GG24901 [Drosophila erecta]
gi|190660360|gb|EDV57552.1| GG24901 [Drosophila erecta]
Length = 446
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 92/175 (52%), Gaps = 12/175 (6%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
L V +P+T +++IR LF G V LI+DK TGQ G F+ Y E+A++AI AL
Sbjct: 114 LIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINAL 173
Query: 114 HNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVY 173
+ L I+V A E + L+V L K T+ ++E +FSPYG++
Sbjct: 174 NG---LRLQNKTIKVSIARPSSESIKGA--NLYVSGLPKNMTQSDLESLFSPYGKIITSR 228
Query: 174 LMRDELKQ------SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D + S+G GF+++ R A AI LNG T + +P+TV+FA+
Sbjct: 229 ILCDNITDEHAAGLSKGVGFIRFDQRFEADRAIKELNGT-TPKNSTEPITVKFAN 282
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKT-----GQQQGC 95
PS + + G A L+V +PK + D+ LF +G +I ++ D T G +G
Sbjct: 190 PSSESIKG---ANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITDEHAAGLSKGV 246
Query: 96 CFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYAD 132
FI++ EADRAI+ L N T PI V++A+
Sbjct: 247 GFIRFDQRFEADRAIKEL-NGTTPKNSTEPITVKFAN 282
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L + E + ++F P+G V+ V ++RD + + +G GFV ++ + A+ AI
Sbjct: 363 WCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQ 422
Query: 202 ALNGIYTMRGCDQPLTVRFADPK 224
+LNG YT+ ++ L V F K
Sbjct: 423 SLNG-YTLG--NRVLQVSFKTNK 442
>gi|260788580|ref|XP_002589327.1| hypothetical protein BRAFLDRAFT_114402 [Branchiostoma floridae]
gi|229274504|gb|EEN45338.1| hypothetical protein BRAFLDRAFT_114402 [Branchiostoma floridae]
Length = 336
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 68/107 (63%), Gaps = 4/107 (3%)
Query: 125 PIQVRYADGE-RERLGAV---EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK 180
PIQ++ A+ E R G E KLFVG ++K+ E +V +F+PYG +E+ ++RD+
Sbjct: 4 PIQMKPANNENRNANGECPVEERKLFVGMVSKKCNESDVRIMFAPYGTIEECTVLRDQNG 63
Query: 181 QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
QSRGC FV +S R AL AI AL+ TM GC PL V+FAD ++ +
Sbjct: 64 QSRGCAFVTFSTRASALNAIKALHQSQTMEGCSSPLVVKFADTQKDK 110
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG V K E D+R +F +G + E +++D+ GQ +GC F+ ++T A AI+A
Sbjct: 27 KLFVGMVSKKCNESDVRIMFAPYGTIEECTVLRDQN-GQSRGCAFVTFSTRASALNAIKA 85
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH T+ G P+ V++AD ++++
Sbjct: 86 LHQSQTMEGCSSPLVVKFADTQKDK 110
>gi|195051457|ref|XP_001993098.1| GH13638 [Drosophila grimshawi]
gi|193900157|gb|EDV99023.1| GH13638 [Drosophila grimshawi]
Length = 726
Score = 96.3 bits (238), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 92/171 (53%), Gaps = 7/171 (4%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
L V +P+T +++IR LF G V LI+DK TGQ G F+ Y E+A++AI A
Sbjct: 114 NLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINA 173
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
L+ L I+V A E + L+V L K T+ ++E +FSP+G++
Sbjct: 174 LNG---LRLQNKTIKVSIARPSSESIKGAN--LYVSGLPKNMTQSDLESLFSPFGKIITS 228
Query: 173 YLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D + S+G GF+++ R A AI LNG T + +P+TV+FA+
Sbjct: 229 RILCDNITGLSKGVGFIRFDQRFEADRAIKELNGT-TPKNSTEPITVKFAN 278
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
PS + + G A L+V +PK + D+ LF G +I ++ D TG +G FI++
Sbjct: 191 PSSESIKG---ANLYVSGLPKNMTQSDLESLFSPFGKIITSRILCDNITGLSKGVGFIRF 247
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYAD 132
EADRAI+ L N T PI V++A+
Sbjct: 248 DQRFEADRAIKEL-NGTTPKNSTEPITVKFAN 278
Score = 44.3 bits (103), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L + E + ++F P+G V+ V ++RD + + +G GFV ++ + A+ AI
Sbjct: 359 WCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQ 418
Query: 202 ALNGIYTM 209
+LNG YT+
Sbjct: 419 SLNG-YTL 425
>gi|324512454|gb|ADY45159.1| ELAV-like protein 1 [Ascaris suum]
Length = 477
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 93/176 (52%), Gaps = 7/176 (3%)
Query: 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEAD 107
G S L + +P+T +E++R LF G + L++DK TGQ G F+ Y E+A
Sbjct: 99 GESKTNLIINYLPQTMSQEEVRSLFSSMGEIDSCKLVRDKITGQSLGYGFVNYVRQEDAL 158
Query: 108 RAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYG 167
+A+ L+ L I+V +A E + L+V L K ++ E+E +F PYG
Sbjct: 159 KAVSTLNG---LRLQNKTIKVSFARPSSESIKGAN--LYVSGLPKSMSQPELENLFRPYG 213
Query: 168 RVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ ++ D + S+G GFV++ + A AI+ LNG GC +P+TV+FA+
Sbjct: 214 QIITSRILSDNITGLSKGVGFVRFDRKGEAEVAISKLNGTIPA-GCTEPVTVKFAN 268
>gi|19549688|ref|NP_599124.1| RNA-binding protein 9, isoform B [Drosophila melanogaster]
gi|19549694|ref|NP_599127.1| RNA-binding protein 9, isoform C [Drosophila melanogaster]
gi|221330653|ref|NP_476937.3| RNA-binding protein 9, isoform I [Drosophila melanogaster]
gi|158226|gb|AAC13645.1| RNA-binding protein [Drosophila melanogaster]
gi|22945349|gb|AAF51177.2| RNA-binding protein 9, isoform B [Drosophila melanogaster]
gi|22945350|gb|AAF51178.2| RNA-binding protein 9, isoform C [Drosophila melanogaster]
gi|220901922|gb|AAF51179.4| RNA-binding protein 9, isoform I [Drosophila melanogaster]
Length = 444
Score = 95.9 bits (237), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 92/175 (52%), Gaps = 12/175 (6%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
L V +P+T +++IR LF G V LI+DK TGQ G F+ Y E+A++AI AL
Sbjct: 112 LIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINAL 171
Query: 114 HNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVY 173
+ L I+V A E + L+V L K T+ ++E +FSPYG++
Sbjct: 172 NG---LRLQNKTIKVSIARPSSESIKGAN--LYVSGLPKNMTQSDLESLFSPYGKIITSR 226
Query: 174 LMRDELKQ------SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D + S+G GF+++ R A AI LNG T + +P+TV+FA+
Sbjct: 227 ILCDNITDEHAAGLSKGVGFIRFDQRFEADRAIKELNGT-TPKNSTEPITVKFAN 280
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKT-----GQQQGC 95
PS + + G A L+V +PK + D+ LF +G +I ++ D T G +G
Sbjct: 188 PSSESIKG---ANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITDEHAAGLSKGV 244
Query: 96 CFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYAD 132
FI++ EADRAI+ L N T PI V++A+
Sbjct: 245 GFIRFDQRFEADRAIKEL-NGTTPKNSTEPITVKFAN 280
Score = 43.5 bits (101), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L E + ++F P+G V+ V ++RD + + +G GFV ++ + A+ AI
Sbjct: 361 WCIFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQ 420
Query: 202 ALNGIYTMRGCDQPLTVRFADPK 224
+LNG YT+ ++ L V F K
Sbjct: 421 SLNG-YTLG--NRVLQVSFKTNK 440
>gi|332255740|ref|XP_003276989.1| PREDICTED: CUGBP Elav-like family member 5 [Nomascus leucogenys]
Length = 438
Score = 95.9 bits (237), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 76/129 (58%), Gaps = 7/129 (5%)
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPG----GVGPIQVRYADGERERLGA 140
+D +GC F+ Y + A +A ALH Q TLPG PIQV+ AD E R G
Sbjct: 39 EDSSRSGGKGCAFLTYCARDSAIKAQTALHEQKTLPGVSPVWARPIQVKPADSE-SRGG- 96
Query: 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAI 200
+ KLFVG LNKQ +E++V +F P+G +++ ++R S+GC FVK+S A AAI
Sbjct: 97 -DRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAI 155
Query: 201 NALNGIYTM 209
+AL+G TM
Sbjct: 156 HALHGSQTM 164
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K EED+ LF+ G + E +++ G +GC F+K+++ EA AI A
Sbjct: 99 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPD-GSSKGCAFVKFSSHTEAQAAIHA 157
Query: 113 LHNQHTLP 120
LH T+P
Sbjct: 158 LHGSQTMP 165
>gi|356532261|ref|XP_003534692.1| PREDICTED: splicing factor 3B subunit 4-like [Glycine max]
Length = 365
Score = 95.9 bits (237), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 98/175 (56%), Gaps = 9/175 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A +VG++ EE + LF + G V+ V + KD+ T Q QG F+++ + E+AD AI+
Sbjct: 25 ATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIK 84
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGR-VE 170
L N L G PI+V A +++ L V LF+G+L+ EK + + FS +G V
Sbjct: 85 VL-NMIKLYG--KPIRVNKASQDKKSLD-VGANLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
Query: 171 DVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224
+ +MRD + SRG GF+ Y + + +AI A+NG Y C++ +TV +A K
Sbjct: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYL---CNRQITVSYAYKK 192
>gi|345787182|ref|XP_542056.3| PREDICTED: ELAV-like protein 3 [Canis lupus familiaris]
Length = 647
Score = 95.9 bits (237), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 94/174 (54%), Gaps = 7/174 (4%)
Query: 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRA 109
S L V +P+ +++ + LF G++ L++DK TGQ G F+ Y+ +AD+A
Sbjct: 324 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKA 383
Query: 110 IRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRV 169
I L+ L I+V YA + + L+V L K ++KE+E++FS YGR+
Sbjct: 384 INTLNG---LKLQTKTIKVSYARPSSASI--RDANLYVSGLPKTMSQKEMEQLFSQYGRI 438
Query: 170 EDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG + G +P+TV+FA+
Sbjct: 439 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFAN 491
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 59/104 (56%), Gaps = 2/104 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 412 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 471
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG-AVEYKLFVGSLNKQA 154
L+ Q L G PI V++A+ ++ G A+ L+ S + A
Sbjct: 472 GLNGQKPL-GAAEPITVKFANNPSQKTGQALLTHLYQSSARRYA 514
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L+ +A E + ++F P+G V +V ++RD + +G GFV ++ D A AI
Sbjct: 564 WCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIA 623
Query: 202 ALNGIYTMRGCDQPLTVRFADPK 224
+LNG R ++ L V F K
Sbjct: 624 SLNG---YRLGERVLQVSFKTSK 643
>gi|395512536|ref|XP_003775304.1| PREDICTED: LOW QUALITY PROTEIN: ELAV-like protein 3 [Sarcophilus
harrisii]
Length = 287
Score = 95.9 bits (237), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 94/175 (53%), Gaps = 9/175 (5%)
Query: 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRA 109
S L V +P+ +E+ + LF G + L++DK TGQ G F+ Y +AD+A
Sbjct: 39 SKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKA 98
Query: 110 IRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGR 168
I L+ L I+V YA R ++ + L+V L K ++KE+E++FS YGR
Sbjct: 99 INTLNG---LKLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGR 152
Query: 169 VEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
+ ++ D++ SRG GF+++ R A AI LNG + G +P+TV+FA+
Sbjct: 153 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GASEPITVKFAN 206
Score = 59.3 bits (142), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 127 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 186
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG 139
L+ Q L G PI V++A+ ++ G
Sbjct: 187 GLNGQKPL-GASEPITVKFANNPSQKTG 213
>gi|432856226|ref|XP_004068415.1| PREDICTED: ELAV-like protein 4-like [Oryzias latipes]
Length = 439
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 98/189 (51%), Gaps = 10/189 (5%)
Query: 38 RGGPSPDLV---DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQG 94
RG PSP + S L V +P+ +E+ R LF G + L++DK TGQ G
Sbjct: 101 RGCPSPMQTGPTNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 160
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQA 154
F+ Y ++A++AI L+ L I+V YA + + L+V L K
Sbjct: 161 YGFVNYIDPKDAEKAINTLNG---LRLQTKTIKVSYARPSSASI--RDANLYVSGLPKTM 215
Query: 155 TEKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCD 213
T+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG G
Sbjct: 216 TQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGAA 274
Query: 214 QPLTVRFAD 222
+P+TV+FA+
Sbjct: 275 EPITVKFAN 283
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L+ + E + ++F P+G V +V ++RD + +G GFV ++ D A AI
Sbjct: 356 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 415
Query: 202 ALNGIYTMRGCDQPLTVRFADPK 224
+LNG R D+ L V F K
Sbjct: 416 SLNG---YRLGDRVLQVSFKTNK 435
>gi|45786151|gb|AAH68008.1| TNRC4 protein, partial [Homo sapiens]
Length = 407
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 73/124 (58%), Gaps = 4/124 (3%)
Query: 104 EEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIF 163
+ A +A ALH Q TLPG PIQV+ AD E + KLFVG L KQ T+++V ++F
Sbjct: 2 DSALKAQSALHEQKTLPGMNRPIQVKPADSESRG----DRKLFVGMLGKQQTDEDVRKMF 57
Query: 164 SPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223
P+G +++ ++R S+GC FVK+ A AAIN L+ T+ G L V+FAD
Sbjct: 58 EPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADT 117
Query: 224 KRPR 227
++ R
Sbjct: 118 EKER 121
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K +ED+R +FE G + E +++ G +GC F+K+ T EA AI
Sbjct: 38 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPD-GTSKGCAFVKFQTHAEAQAAINT 96
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH+ TLPG + V++AD E+ER
Sbjct: 97 LHSSRTLPGASSSLVVKFADTEKER 121
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINA 202
+F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + + A AAI A
Sbjct: 323 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 382
Query: 203 LNGI 206
+NG
Sbjct: 383 MNGF 386
>gi|322798581|gb|EFZ20185.1| hypothetical protein SINV_01390 [Solenopsis invicta]
Length = 523
Score = 95.5 bits (236), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 93/174 (53%), Gaps = 7/174 (4%)
Query: 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRA 109
S L V +P++ +++IR LF G V LI+DK +GQ G F+ Y E+A++A
Sbjct: 25 SKTNLIVNYLPQSMTQDEIRSLFSSIGEVESCKLIRDKLSGQSLGYGFVNYHRPEDAEKA 84
Query: 110 IRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRV 169
I L+ L I+V YA E + L+V L K ++++E +FSPYGR+
Sbjct: 85 INTLNG---LRLQNKTIKVSYARPSSEAIKGA--NLYVSGLPKNMAQQDLENLFSPYGRI 139
Query: 170 EDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D + S+G GF+++ R A AI LNG +G +P+TV+FA+
Sbjct: 140 ITSRILCDNITGLSKGVGFIRFDQRVEAERAIQELNGTIP-KGSSEPITVKFAN 192
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 98/220 (44%), Gaps = 57/220 (25%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
PS + + G A L+V +PK ++D+ LF +G +I ++ D TG +G FI++
Sbjct: 105 PSSEAIKG---ANLYVSGLPKNMAQQDLENLFSPYGRIITSRILCDNITGLSKGVGFIRF 161
Query: 101 ATSEEADRAIRALHNQHTLPGGVG-PIQVRYADG------------------ERERLGA- 140
EA+RAI+ L+ T+P G PI V++A+ R G
Sbjct: 162 DQRVEAERAIQELNG--TIPKGSSEPITVKFANNPSNNNKAIPPLAAYLAPQATRRFGGP 219
Query: 141 ------------------------------VEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
+ +FV +L + E + ++F P+G V+
Sbjct: 220 IHHPTGRFRYSPLAGDLLANSMLPGNTMNGAGWCIFVYNLAPETEENVLWQLFGPFGAVQ 279
Query: 171 DVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTM 209
V ++RD + + +G GFV ++ + A+ AI +LNG YT+
Sbjct: 280 SVKVIRDLQTNKCKGFGFVTMTNYEEAVVAIQSLNG-YTL 318
>gi|268529184|ref|XP_002629718.1| C. briggsae CBR-EXC-7 protein [Caenorhabditis briggsae]
Length = 456
Score = 95.5 bits (236), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 99/191 (51%), Gaps = 9/191 (4%)
Query: 35 FSG--RGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQ 92
+SG R +P++ G S L + +P+ +E++R LF G + L++DK TGQ
Sbjct: 26 YSGTQRYCTAPNVDIGESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQS 85
Query: 93 QGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNK 152
G F+ Y E+A RA+ + + L I+V YA +++ L+V + K
Sbjct: 86 LGYGFVNYVREEDALRAVSSFNG---LRLQNKTIKVSYARPSNDQIKGSN--LYVSGIPK 140
Query: 153 QATEKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRG 211
T E+E IF P+G++ ++ D + S+G GFV++ +D A AI LNG G
Sbjct: 141 SMTLHELEGIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADTAIKTLNGSIP-TG 199
Query: 212 CDQPLTVRFAD 222
C + +TV+FA+
Sbjct: 200 CSEQITVKFAN 210
>gi|449459840|ref|XP_004147654.1| PREDICTED: splicing factor 3B subunit 4-like [Cucumis sativus]
gi|449498825|ref|XP_004160645.1| PREDICTED: splicing factor 3B subunit 4-like [Cucumis sativus]
Length = 379
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 96/172 (55%), Gaps = 9/172 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A +VG++ EE + LF + G V+ V + KD+ T QG FI++ + E+AD AI+
Sbjct: 25 ATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIK 84
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGR-VE 170
L N L G PI+V A +++ L V LF+G+L+ EK + + FS +G V
Sbjct: 85 VL-NMIKLYG--KPIRVNKASQDKKSLD-VGANLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
Query: 171 DVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221
+ +MRD + SRG GF+ Y + + AAI A+NG Y C++ +TV +A
Sbjct: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL---CNRQITVSYA 189
>gi|401415854|ref|XP_003872422.1| putative RNA-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322488646|emb|CBZ23893.1| putative RNA-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 638
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 94/195 (48%), Gaps = 23/195 (11%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
LFV + E+D+R LFE++G ++ AL++D TG+ G F++Y+T +EA A+ A
Sbjct: 66 NLFVRKLASAVTEDDMRKLFEQYGTIMSFALMRDIHTGESLGTAFVRYSTHDEARAAMAA 125
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEY-----KLFVGSLNKQATEKEVEEIFSPYG 167
L + L G PI +++A E + + KLFV ++ T + + +IFS +G
Sbjct: 126 LDGRE-LYG--RPISIQWAKREHDSTPCGDARRKIRKLFVRNIPLDVTARHLRQIFSKFG 182
Query: 168 RVEDVYLMRDE--------------LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCD 213
+ +V L D Q R F+ + D+A A++ L+ CD
Sbjct: 183 SINNVTLHSDTAPAAARDNGDNSRPASQMRNIAFILFQEDDVAEQAVSTLHNTCPFDSCD 242
Query: 214 -QPLTVRFADPKRPR 227
PL V+ A+ R R
Sbjct: 243 GIPLMVKLAEDNRDR 257
>gi|389593931|ref|XP_003722214.1| putative RNA-binding protein [Leishmania major strain Friedlin]
gi|321438712|emb|CBZ12472.1| putative RNA-binding protein [Leishmania major strain Friedlin]
Length = 639
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 94/195 (48%), Gaps = 23/195 (11%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
LFV + E+D+R LFE++G ++ AL++D TG+ G F++Y+T +EA A+ A
Sbjct: 67 NLFVRKLASAVTEDDMRKLFEQYGTIMSFALMRDIHTGESLGTAFVRYSTHDEASAAMAA 126
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEY-----KLFVGSLNKQATEKEVEEIFSPYG 167
L + L G PI +++A E + + KLFV ++ T + + +IFS +G
Sbjct: 127 LDGRE-LYG--RPISIQWAKREHDSTPCGDARRKIRKLFVRNIPLDVTARHLRQIFSKFG 183
Query: 168 RVEDVYLMRDE--------------LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCD 213
+ +V L D Q R F+ + D+A A+ AL+ C+
Sbjct: 184 SISNVTLHSDTAPAAARDNGDNSRPASQMRNIAFILFQDDDVAEQAVGALHNTCPFDSCE 243
Query: 214 -QPLTVRFADPKRPR 227
PL V+ A+ R R
Sbjct: 244 GIPLMVKLAEDNRDR 258
>gi|148229719|ref|NP_001086794.1| MGC82420 protein [Xenopus laevis]
gi|50604232|gb|AAH77458.1| MGC82420 protein [Xenopus laevis]
Length = 383
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 101/185 (54%), Gaps = 12/185 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ + KD+ TGQ QG F+++ + E+AD AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+ N L G PI+V A + L V +F+G+L+ + EK + + FS +G +
Sbjct: 73 IM-NMIKLYG--KPIRVNKASAHNKNLD-VGANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 172 V-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+MRD + S+G F+ Y+ D + AAI A+NG Y C++P+TV +A D K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINYASFDASDAAIEAMNGQYL---CNRPITVSYAFKKDSKGE 185
Query: 227 RPGDS 231
R G +
Sbjct: 186 RHGSA 190
>gi|194210863|ref|XP_001488649.2| PREDICTED: splicing factor 3B subunit 4-like [Equus caballus]
Length = 450
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 101/185 (54%), Gaps = 12/185 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ + KD+ TGQ QG F+++ + E+AD AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+ N L G PI+V A + L V +F+G+L+ + EK + + FS +G +
Sbjct: 73 IM-NMIKLYG--KPIRVNKASAHNKNLD-VGANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 172 V-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+MRD + S+G F+ ++ D + AAI A+NG Y C++P+TV +A D K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAFKKDSKGE 185
Query: 227 RPGDS 231
R G +
Sbjct: 186 RHGSA 190
>gi|146093095|ref|XP_001466659.1| putative RNA-binding protein [Leishmania infantum JPCM5]
gi|134071022|emb|CAM69702.1| putative RNA-binding protein [Leishmania infantum JPCM5]
Length = 639
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 95/195 (48%), Gaps = 23/195 (11%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
LFV + E+D+R LFE++G ++ AL++D TG+ G F++Y+T +EA A+ A
Sbjct: 67 NLFVRKLASAVTEDDMRKLFEQYGTIMSFALMRDIHTGESLGTAFVRYSTHDEARAAMAA 126
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEY-----KLFVGSLNKQATEKEVEEIFSPYG 167
L + L G PI +++A E + + KLFV ++ T + + +IFS +G
Sbjct: 127 LDGRE-LYG--RPISIQWAKREHDSTPCGDARRKIRKLFVRNIPLDVTARHLRQIFSKFG 183
Query: 168 RVEDVYLMRDE--------------LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCD 213
+ +V L D Q R F+ + D+A A++AL+ C+
Sbjct: 184 SISNVTLHSDTAPAATRDNGDSSRPASQMRNIAFILFQDDDVAEQAVSALHNTCPFDSCE 243
Query: 214 -QPLTVRFADPKRPR 227
PL V+ A+ R R
Sbjct: 244 GIPLMVKLAEDNRDR 258
>gi|348504313|ref|XP_003439706.1| PREDICTED: ELAV-like protein 4-like [Oreochromis niloticus]
Length = 476
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 100/190 (52%), Gaps = 12/190 (6%)
Query: 38 RGGPSPDLV---DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQG 94
RG PSP + S L V +P+ +E+ R LF G + L++DK TGQ G
Sbjct: 139 RGCPSPMQTGPTNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 198
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQ 153
F+ Y ++A++AI L+ L I+V YA R ++ + L+V L K
Sbjct: 199 YGFVNYIDPKDAEKAINTLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKT 252
Query: 154 ATEKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGC 212
T+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG G
Sbjct: 253 MTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGA 311
Query: 213 DQPLTVRFAD 222
+P+TV+FA+
Sbjct: 312 AEPITVKFAN 321
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L+ + E + ++F P+G V +V ++RD + +G GFV ++ D A AI
Sbjct: 393 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 452
Query: 202 ALNGIYTMRGCDQPLTVRFADPK 224
+LNG R D+ L V F K
Sbjct: 453 SLNG---YRLGDRVLQVSFKTNK 472
>gi|225430808|ref|XP_002271291.1| PREDICTED: splicing factor 3B subunit 4 [Vitis vinifera]
Length = 373
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 97/175 (55%), Gaps = 9/175 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A +VG++ EE + LF + G V+ V + KD+ T QG F+++ + E+AD AI+
Sbjct: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGR-VE 170
L N L G PI+V A +++ L V LFVG+L+ EK + + FS +G V
Sbjct: 85 VL-NMIKLYG--KPIRVNKASQDKKSLD-VGANLFVGNLDPDVDEKLLYDTFSAFGVIVT 140
Query: 171 DVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224
+ +MRD + SRG GFV Y + + AAI A+NG Y C++ +TV +A K
Sbjct: 141 NPKIMRDPDTGNSRGFGFVSYDSFEASDAAIEAMNGQYL---CNRQITVSYAYKK 192
>gi|7322081|gb|AAB25519.2| RRM9 [Drosophila melanogaster]
Length = 444
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 92/175 (52%), Gaps = 12/175 (6%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
L V +P+T +++IR LF G V LI+DK TGQ G F+ Y E+A++AI AL
Sbjct: 112 LIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINAL 171
Query: 114 HNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVY 173
+ L I+V A E + L+V L K T+ ++E +FSPYG++
Sbjct: 172 NG---LRLQNKTIKVSIARPSSESIKGAN--LYVSGLPKNMTQSDLESLFSPYGKIITSR 226
Query: 174 LMRDELK------QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D + S+G GF+++ R A AI LNG T + +P+TV+FA+
Sbjct: 227 ILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNGT-TPKNSTEPITVKFAN 280
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 9/97 (9%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQ-----QGC 95
PS + + G A L+V +PK + D+ LF +G +I ++ D TG+ +G
Sbjct: 188 PSSESIKG---ANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITGEHAAGLSKGV 244
Query: 96 CFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYAD 132
FI++ EADRAI+ L N T PI V++A+
Sbjct: 245 GFIRFDQRFEADRAIKEL-NGTTPKNSTEPITVKFAN 280
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L E + ++F P+G V+ V ++RD + + +G GFV ++ + A+ AI
Sbjct: 361 WCIFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQ 420
Query: 202 ALNGIYTMRGCDQPLTVRFADPK 224
+LNG YT+ ++ L V F K
Sbjct: 421 SLNG-YTLG--NRVLQVSFKTNK 440
>gi|194036296|ref|XP_001926524.1| PREDICTED: splicing factor 3B subunit 4 [Sus scrofa]
gi|344275508|ref|XP_003409554.1| PREDICTED: splicing factor 3B subunit 4-like [Loxodonta africana]
gi|417400717|gb|JAA47284.1| Putative splicing factor 3b subunit 4 [Desmodus rotundus]
Length = 424
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 101/185 (54%), Gaps = 12/185 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ + KD+ TGQ QG F+++ + E+AD AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+ N L G PI+V A + L V +F+G+L+ + EK + + FS +G +
Sbjct: 73 IM-NMIKLYG--KPIRVNKASAHNKNLD-VGANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 172 V-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+MRD + S+G F+ ++ D + AAI A+NG Y C++P+TV +A D K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAFKKDSKGE 185
Query: 227 RPGDS 231
R G +
Sbjct: 186 RHGSA 190
>gi|334321532|ref|XP_003340124.1| PREDICTED: ELAV-like protein 4 isoform 2 [Monodelphis domestica]
Length = 347
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 100/192 (52%), Gaps = 12/192 (6%)
Query: 36 SGRGGPSP---DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQ 92
+GR PSP S L V +P+ +E+ R LF G + L++DK TGQ
Sbjct: 20 NGRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQS 79
Query: 93 QGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLN 151
G F+ Y ++A++AI L+ L I+V YA R ++ + L+V L
Sbjct: 80 LGYGFVNYIDPKDAEKAINTLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLP 133
Query: 152 KQATEKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMR 210
K T+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG
Sbjct: 134 KTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPS 192
Query: 211 GCDQPLTVRFAD 222
G +P+TV+FA+
Sbjct: 193 GATEPITVKFAN 204
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 97/223 (43%), Gaps = 54/223 (24%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
Query: 112 ALHNQHTLPGGVGPIQVRYA---------------------------------------- 131
L+ Q G PI V++A
Sbjct: 185 GLNGQKP-SGATEPITVKFANNPSQKTSQALLSQLYQSPNRRYPGPLHHQAQRFSRFSPI 243
Query: 132 --DGERERLG-------AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQ 181
DG +G + +FV +L+ + E + ++F P+G V +V ++RD +
Sbjct: 244 TIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNK 303
Query: 182 SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224
+G GFV ++ D A AI +LNG R D+ L V F K
Sbjct: 304 CKGFGFVTMTNYDEAAMAIASLNG---YRLGDRVLQVSFKTNK 343
>gi|148226626|ref|NP_001080100.1| splicing factor 3b, subunit 4, 49kDa [Xenopus laevis]
gi|28374170|gb|AAH45264.1| Spx-prov protein [Xenopus laevis]
Length = 377
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 101/185 (54%), Gaps = 12/185 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ + KD+ TGQ QG F+++ + E+AD AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+ N L G PI+V A + L V +F+G+L+ + EK + + FS +G +
Sbjct: 73 IM-NMIKLYG--KPIRVNKASAHNKNLD-VGANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 172 V-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+MRD + S+G F+ Y+ D + AAI A+NG Y C++P+TV +A D K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINYASFDASDAAIEAMNGQYL---CNRPITVSYAFKKDSKGE 185
Query: 227 RPGDS 231
R G +
Sbjct: 186 RHGSA 190
>gi|5032069|ref|NP_005841.1| splicing factor 3B subunit 4 [Homo sapiens]
gi|386781627|ref|NP_001248161.1| splicing factor 3B subunit 4 [Macaca mulatta]
gi|114559210|ref|XP_513768.2| PREDICTED: splicing factor 3B subunit 4 isoform 4 [Pan troglodytes]
gi|397492924|ref|XP_003817370.1| PREDICTED: splicing factor 3B subunit 4 [Pan paniscus]
gi|402856043|ref|XP_003892612.1| PREDICTED: splicing factor 3B subunit 4 [Papio anubis]
gi|426331272|ref|XP_004026606.1| PREDICTED: splicing factor 3B subunit 4 [Gorilla gorilla gorilla]
gi|2500587|sp|Q15427.1|SF3B4_HUMAN RecName: Full=Splicing factor 3B subunit 4; AltName:
Full=Pre-mRNA-splicing factor SF3b 49 kDa subunit;
AltName: Full=SF3b50; AltName:
Full=Spliceosome-associated protein 49; Short=SAP 49
gi|556217|gb|AAA60300.1| spliceosomal protein [Homo sapiens]
gi|13279089|gb|AAH04273.1| Splicing factor 3b, subunit 4, 49kDa [Homo sapiens]
gi|15530216|gb|AAH13886.1| Splicing factor 3b, subunit 4, 49kDa [Homo sapiens]
gi|55960588|emb|CAI12648.1| splicing factor 3b, subunit 4, 49kDa [Homo sapiens]
gi|55960980|emb|CAI12554.1| splicing factor 3b, subunit 4, 49kDa [Homo sapiens]
gi|60688325|gb|AAH90883.1| Splicing factor 3b, subunit 4, 49kDa [Homo sapiens]
gi|119573980|gb|EAW53595.1| splicing factor 3b, subunit 4, 49kDa [Homo sapiens]
gi|123989960|gb|ABM83897.1| splicing factor 3b, subunit 4, 49kDa [synthetic construct]
gi|123999284|gb|ABM87219.1| splicing factor 3b, subunit 4, 49kDa [synthetic construct]
gi|157928508|gb|ABW03550.1| splicing factor 3b, subunit 4, 49kDa [synthetic construct]
gi|261859948|dbj|BAI46496.1| splicing factor 3b, subunit 4, 49kDa [synthetic construct]
gi|355745635|gb|EHH50260.1| hypothetical protein EGM_01064 [Macaca fascicularis]
gi|380808686|gb|AFE76218.1| splicing factor 3B subunit 4 [Macaca mulatta]
gi|383415041|gb|AFH30734.1| splicing factor 3B subunit 4 [Macaca mulatta]
gi|410207952|gb|JAA01195.1| splicing factor 3b, subunit 4, 49kDa [Pan troglodytes]
gi|410251462|gb|JAA13698.1| splicing factor 3b, subunit 4, 49kDa [Pan troglodytes]
gi|410292418|gb|JAA24809.1| splicing factor 3b, subunit 4, 49kDa [Pan troglodytes]
gi|410337561|gb|JAA37727.1| splicing factor 3b, subunit 4, 49kDa [Pan troglodytes]
Length = 424
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 101/185 (54%), Gaps = 12/185 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ + KD+ TGQ QG F+++ + E+AD AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+ N L G PI+V A + L V +F+G+L+ + EK + + FS +G +
Sbjct: 73 IM-NMIKLYG--KPIRVNKASAHNKNLD-VGANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 172 V-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+MRD + S+G F+ ++ D + AAI A+NG Y C++P+TV +A D K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAFKKDSKGE 185
Query: 227 RPGDS 231
R G +
Sbjct: 186 RHGSA 190
>gi|126313662|ref|XP_001365466.1| PREDICTED: splicing factor 3B subunit 4-like [Monodelphis
domestica]
Length = 424
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 101/185 (54%), Gaps = 12/185 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ + KD+ TGQ QG F+++ + E+AD AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+ N L G PI+V A + L V +F+G+L+ + EK + + FS +G +
Sbjct: 73 IM-NMIKLYG--KPIRVNKASAHNKNLD-VGANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 172 V-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+MRD + S+G F+ ++ D + AAI A+NG Y C++P+TV +A D K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAFKKDSKGE 185
Query: 227 RPGDS 231
R G +
Sbjct: 186 RHGSA 190
>gi|308464232|ref|XP_003094384.1| CRE-EXC-7 protein [Caenorhabditis remanei]
gi|308247806|gb|EFO91758.1| CRE-EXC-7 protein [Caenorhabditis remanei]
Length = 457
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 99/186 (53%), Gaps = 7/186 (3%)
Query: 38 RGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCF 97
R +P++ G S L + +P+ +E++R LF G + L++DK TGQ G F
Sbjct: 30 RYCTAPNVDIGESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGF 89
Query: 98 IKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEK 157
+ Y +EAD A+RA+ + + L I+V YA +++ L+V + K T
Sbjct: 90 VNYV--QEAD-ALRAVSSFNGLRLQNKTIKVSYARPSNDQIKGSN--LYVSGIPKSMTLH 144
Query: 158 EVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPL 216
E+E IF P+G++ ++ D + S+G GFV++ +D A AI LNG GC + +
Sbjct: 145 ELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADNAIKTLNGSIP-TGCSEQI 203
Query: 217 TVRFAD 222
TV+FA+
Sbjct: 204 TVKFAN 209
>gi|296228655|ref|XP_002759903.1| PREDICTED: splicing factor 3B subunit 4 [Callithrix jacchus]
Length = 424
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 101/185 (54%), Gaps = 12/185 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ + KD+ TGQ QG F+++ + E+AD AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+ N L G PI+V A + L V +F+G+L+ + EK + + FS +G +
Sbjct: 73 IM-NMIKLYG--KPIRVNKASAHNKNLD-VGANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 172 V-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+MRD + S+G F+ ++ D + AAI A+NG Y C++P+TV +A D K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAFKKDSKGE 185
Query: 227 RPGDS 231
R G +
Sbjct: 186 RHGSA 190
>gi|338762832|gb|AEI98619.1| hypothetical protein 111O18.6 [Coffea canephora]
Length = 368
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 100/183 (54%), Gaps = 12/183 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A +VG++ EE + LF + G V+ V + KD+ T QG F+++ + E+AD AI+
Sbjct: 25 ATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNSHQGYGFVEFRSEEDADYAIK 84
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGR-VE 170
L N L G PI+V A +++ + V LF+G+L+ EK + + FS +G V
Sbjct: 85 VL-NMIKLYG--KPIRVNKASQDKKSVD-VGANLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
Query: 171 DVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+ +MRD E SRG GF+ Y + + AAI A+NG Y C++ +TV +A D K
Sbjct: 141 NPKIMRDPETGNSRGFGFISYDSFEASDAAIEAMNGQYL---CNRQITVSYAYKKDTKGE 197
Query: 227 RPG 229
R G
Sbjct: 198 RHG 200
>gi|345782582|ref|XP_540295.3| PREDICTED: splicing factor 3B subunit 4 [Canis lupus familiaris]
Length = 424
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 101/185 (54%), Gaps = 12/185 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ + KD+ TGQ QG F+++ + E+AD AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+ N L G PI+V A + L V +F+G+L+ + EK + + FS +G +
Sbjct: 73 IM-NMIKLYG--KPIRVNKASAHNKNLD-VGANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 172 V-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+MRD + S+G F+ ++ D + AAI A+NG Y C++P+TV +A D K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAFKKDSKGE 185
Query: 227 RPGDS 231
R G +
Sbjct: 186 RHGSA 190
>gi|431896603|gb|ELK06015.1| Splicing factor 3B subunit 4 [Pteropus alecto]
Length = 424
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 101/185 (54%), Gaps = 12/185 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ + KD+ TGQ QG F+++ + E+AD AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+ N L G PI+V A + L V +F+G+L+ + EK + + FS +G +
Sbjct: 73 IM-NMIKLYG--KPIRVNKASAHNKNLD-VGANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 172 V-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+MRD + S+G F+ ++ D + AAI A+NG Y C++P+TV +A D K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAFKKDSKGE 185
Query: 227 RPGDS 231
R G +
Sbjct: 186 RHGSA 190
>gi|410968226|ref|XP_004001545.1| PREDICTED: LOW QUALITY PROTEIN: splicing factor 3B subunit 4 [Felis
catus]
Length = 424
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 101/185 (54%), Gaps = 12/185 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ + KD+ TGQ QG F+++ + E+AD AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+ N L G PI+V A + L V +F+G+L+ + EK + + FS +G +
Sbjct: 73 IM-NMIKLYG--KPIRVNKASAHNKNLD-VGANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 172 V-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+MRD + S+G F+ ++ D + AAI A+NG Y C++P+TV +A D K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAFKKDSKGE 185
Query: 227 RPGDS 231
R G +
Sbjct: 186 RHGSA 190
>gi|329663420|ref|NP_001192513.1| splicing factor 3B subunit 4 [Bos taurus]
gi|395856067|ref|XP_003800464.1| PREDICTED: splicing factor 3B subunit 4 [Otolemur garnettii]
gi|426216470|ref|XP_004002485.1| PREDICTED: splicing factor 3B subunit 4 [Ovis aries]
gi|281346199|gb|EFB21783.1| hypothetical protein PANDA_020653 [Ailuropoda melanoleuca]
gi|296489611|tpg|DAA31724.1| TPA: splicing factor 3b, subunit 4, 49kDa [Bos taurus]
Length = 424
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 101/185 (54%), Gaps = 12/185 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ + KD+ TGQ QG F+++ + E+AD AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+ N L G PI+V A + L V +F+G+L+ + EK + + FS +G +
Sbjct: 73 IM-NMIKLYG--KPIRVNKASAHNKNLD-VGANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 172 V-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+MRD + S+G F+ ++ D + AAI A+NG Y C++P+TV +A D K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAFKKDSKGE 185
Query: 227 RPGDS 231
R G +
Sbjct: 186 RHGSA 190
>gi|327264130|ref|XP_003216869.1| PREDICTED: ELAV-like protein 3-like [Anolis carolinensis]
Length = 386
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 10/172 (5%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
L V +P+ +E+ + LF G + L++DK TGQ G F+ Y S +AD+AI L
Sbjct: 67 LIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDSNDADKAINTL 126
Query: 114 HNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
+ L I+V YA R ++ + L+V L K ++KE+E++FS YGR+
Sbjct: 127 NG---LKLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS 180
Query: 173 YLMRDELKQ--SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG + G +P+TV+FA+
Sbjct: 181 RILVDQVTAGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GASEPITVKFAN 231
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L+ +A E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 305 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 364
Query: 204 NGIYTMRGCDQPLTVRFADPKRPR 227
NG R D+ L V F K+ +
Sbjct: 365 NG---YRLGDRILQVSFKTSKQHK 385
>gi|348586343|ref|XP_003478928.1| PREDICTED: splicing factor 3B subunit 4-like [Cavia porcellus]
Length = 424
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 101/185 (54%), Gaps = 12/185 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ + KD+ TGQ QG F+++ + E+AD AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+ N L G PI+V A + L V +F+G+L+ + EK + + FS +G +
Sbjct: 73 IM-NMIKLYG--KPIRVNKASAHNKNLD-VGANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 172 V-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+MRD + S+G F+ ++ D + AAI A+NG Y C++P+TV +A D K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAFKKDSKGE 185
Query: 227 RPGDS 231
R G +
Sbjct: 186 RHGSA 190
>gi|345493621|ref|XP_003427111.1| PREDICTED: ELAV-like protein 3-like isoform 3 [Nasonia vitripennis]
gi|345493623|ref|XP_001603257.2| PREDICTED: ELAV-like protein 3-like isoform 1 [Nasonia vitripennis]
Length = 349
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 92/185 (49%), Gaps = 20/185 (10%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+T +E+IR LF G V LI+DK TGQ G F+ Y E+A++AI
Sbjct: 28 TNLIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKLTGQSLGYGFVNYHRPEDAEKAIN 87
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
L+ I+V YA E + L+V L K T++++E +FSPYGR+
Sbjct: 88 TLNGLRLQN---KTIKVSYARPSSEAIKGA--NLYVSGLPKNMTQQDLENLFSPYGRIIT 142
Query: 172 VYLMRDELKQ--------------SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ D + S+G GF+++ R A AI LNG +G +P+T
Sbjct: 143 SRILCDNITVRQFVTGGGDNLPGLSKGVGFIRFDQRVEAERAIQELNGTIP-KGSTEPIT 201
Query: 218 VRFAD 222
V+FA+
Sbjct: 202 VKFAN 206
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 105/248 (42%), Gaps = 72/248 (29%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKT----------- 89
PS + + G A L+V +PK ++D+ LF +G +I ++ D T
Sbjct: 106 PSSEAIKG---ANLYVSGLPKNMTQQDLENLFSPYGRIITSRILCDNITVRQFVTGGGDN 162
Query: 90 --GQQQGCCFIKYATSEEADRAIRALHNQHTLPGGV------------------------ 123
G +G FI++ EA+RAI+ L+ T+P G
Sbjct: 163 LPGLSKGVGFIRFDQRVEAERAIQELNG--TIPKGSTEPITVKFANNPSNNNKAIPPLAA 220
Query: 124 -----------GPI-----QVRYA--DGER--------ERLGAVEYKLFVGSLNKQATEK 157
GPI + RY+ G+ + + +FV +L + E
Sbjct: 221 YLTPQATRRFGGPIHHPTGRFRYSPLAGDLLANSMLPGNAMNGSGWCIFVYNLAPETEEN 280
Query: 158 EVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPL 216
+ ++F P+G V+ V ++RD + + +G GFV ++ + A+ AI +LNG YT+ ++ L
Sbjct: 281 VLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYEEAVVAIQSLNG-YTL--GNRVL 337
Query: 217 TVRFADPK 224
V F K
Sbjct: 338 QVSFKTNK 345
>gi|384250449|gb|EIE23928.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 358
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 103/185 (55%), Gaps = 16/185 (8%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG++ EE + LF + G V+ V L KD+ T Q QG F+++ + ++AD AI+
Sbjct: 29 ATVYVGNLDVQLSEELVWELFVQSGPVVNVYLPKDRVTSQHQGYGFVEFKSEDDADYAIK 88
Query: 112 ALHNQHTLPGGVGPIQVRYA--DGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRV 169
L N + G PI+V A D + + +GA LF+G+++ EK + + FS +G +
Sbjct: 89 IL-NMIKVYG--KPIRVNKASQDKKTQDVGA---NLFIGNIDPDVDEKLLYDTFSAFGMI 142
Query: 170 EDV-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPK 224
+MRD E ++G GFV Y + + AAI A+NG + C++P+TV FA D K
Sbjct: 143 IQTPKIMRDPETGATKGFGFVSYDSFEASDAAIEAMNGQFL---CNRPITVSFAYKKDTK 199
Query: 225 RPRPG 229
R G
Sbjct: 200 GERHG 204
>gi|260821286|ref|XP_002605964.1| hypothetical protein BRAFLDRAFT_92208 [Branchiostoma floridae]
gi|229291301|gb|EEN61974.1| hypothetical protein BRAFLDRAFT_92208 [Branchiostoma floridae]
Length = 330
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 101/189 (53%), Gaps = 11/189 (5%)
Query: 39 GGPSPDLVDGSSF----AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQG 94
GG SPD GSS L V +P+T +++I+ LF G V LI+DK TGQ G
Sbjct: 10 GGGSPDGRTGSSTEDSKTNLIVNYLPQTMTQDEIKSLFSSIGEVESCKLIRDKVTGQSLG 69
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQA 154
F+ Y ++A++AI L+ L I+V YA + + + L+V L K
Sbjct: 70 YGFVNYVKPQDAEKAINTLNG---LRLQAKTIKVSYARPSSQAIK--DANLYVSGLPKTM 124
Query: 155 TEKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCD 213
T++++E +F +GR+ ++ D + QSRG GFV++ R A AI LNG + +G
Sbjct: 125 TQQDLEGLFEAHGRIITSRILFDPVTGQSRGVGFVRFDQRVEAERAITELNG-HIPKGAT 183
Query: 214 QPLTVRFAD 222
P+TV+FA+
Sbjct: 184 DPITVKFAN 192
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 97/218 (44%), Gaps = 49/218 (22%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++D+ LFE HG +I ++ D TGQ +G F+++ EA+RAI
Sbjct: 113 ANLYVSGLPKTMTQQDLEGLFEAHGRIITSRILFDPVTGQSRGVGFVRFDQRVEAERAIT 172
Query: 112 ALHNQHTLPGGVGPIQVRYADG-----------------ERERLG--------------- 139
L N H G PI V++A+ R LG
Sbjct: 173 EL-NGHIPKGATDPITVKFANNPSQNHAKALQQAAYLAPARRYLGPMLHQTARFRYSPMG 231
Query: 140 ------------AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCG 186
+ +FV +L + + ++F P+G V +V ++RD + + +G G
Sbjct: 232 ADPMGVGNIPNGGTGFCIFVYNLAPDTEDSVLWQLFGPFGAVTNVKVIRDFQTNKCKGFG 291
Query: 187 FVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224
FV +H D A+ AI LNG Y + G + L V F K
Sbjct: 292 FVTMAHYDEAVVAIAQLNG-YCLGG--RVLQVSFKTNK 326
>gi|23346437|ref|NP_694693.1| splicing factor 3B subunit 4 [Mus musculus]
gi|58865472|ref|NP_001011951.1| splicing factor 3B subunit 4 [Rattus norvegicus]
gi|354472911|ref|XP_003498680.1| PREDICTED: splicing factor 3B subunit 4-like [Cricetulus griseus]
gi|81910895|sp|Q6AYL5.1|SF3B4_RAT RecName: Full=Splicing factor 3B subunit 4
gi|81914822|sp|Q8QZY9.1|SF3B4_MOUSE RecName: Full=Splicing factor 3B subunit 4
gi|20071686|gb|AAH26567.1| Splicing factor 3b, subunit 4 [Mus musculus]
gi|26338948|dbj|BAC33145.1| unnamed protein product [Mus musculus]
gi|37537250|gb|AAH24418.3| Splicing factor 3b, subunit 4 [Mus musculus]
gi|50925599|gb|AAH78997.1| Splicing factor 3b, subunit 4 [Rattus norvegicus]
gi|55391441|gb|AAH85273.1| Splicing factor 3b, subunit 4 [Mus musculus]
gi|74183317|dbj|BAE22576.1| unnamed protein product [Mus musculus]
gi|148706922|gb|EDL38869.1| splicing factor 3b, subunit 4 [Mus musculus]
gi|149030610|gb|EDL85647.1| rCG51900 [Rattus norvegicus]
gi|344238680|gb|EGV94783.1| Splicing factor 3B subunit 4 [Cricetulus griseus]
Length = 424
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 101/185 (54%), Gaps = 12/185 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ + KD+ TGQ QG F+++ + E+AD AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+ N L G PI+V A + L V +F+G+L+ + EK + + FS +G +
Sbjct: 73 IM-NMIKLYG--KPIRVNKASAHNKNLD-VGANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 172 V-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+MRD + S+G F+ ++ D + AAI A+NG Y C++P+TV +A D K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAFKKDSKGE 185
Query: 227 RPGDS 231
R G +
Sbjct: 186 RHGSA 190
>gi|403221974|dbj|BAM40106.1| splicing factor 3b subunit 4 [Theileria orientalis strain Shintoku]
Length = 326
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 101/190 (53%), Gaps = 14/190 (7%)
Query: 45 LVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSE 104
L D + A L++G++ A EE + F + G V + + +DK TGQ QG F++Y T
Sbjct: 11 LYDRNQEATLYIGNLDIQADEELLWEFFMQAGRVRSINIPRDKVTGQHQGFGFVEYETET 70
Query: 105 EADRAIRALHNQHTLPGGVGPIQVRYA--DGERERLGAVEYKLFVGSLNKQATEKEVEEI 162
+AD A+R L + + P+++ A D E +GA LF+G+++ + EK + +
Sbjct: 71 DADYALRIL---NFIKLYHKPLRLNKASKDKENTEIGA---NLFIGNIDDEVDEKLLHDT 124
Query: 163 FSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA- 221
FS +G V ++RDE R FV + + + + AA+ ++NG + C++P+ V +A
Sbjct: 125 FSAFGTVVFTKIVRDEANSGRSYAFVSFDNFESSDAALASMNGQFL---CNKPIHVSYAY 181
Query: 222 --DPKRPRPG 229
D K R G
Sbjct: 182 KKDTKGERHG 191
>gi|347446711|ref|NP_001231530.1| ELAV-like protein 4 isoform 2 [Danio rerio]
Length = 398
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 100/193 (51%), Gaps = 15/193 (7%)
Query: 38 RGGPSPDLVDGS---SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQG 94
R PSP GS S L V +P+ +E+ R LF G + L++DK TGQ G
Sbjct: 58 RSCPSPMQTGGSNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 117
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQ 153
F+ Y ++A++AI L+ L I+V YA R ++ + L+V L K
Sbjct: 118 YGFVNYIDPKDAEKAINTLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKT 171
Query: 154 ATEKEVEEIFSPYGRVEDVYLMRDELK----QSRGCGFVKYSHRDMALAAINALNGIYTM 209
T+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG
Sbjct: 172 MTQKELEQLFSQYGRIITSRILVDQVTGPTGGSRGVGFIRFDKRIEAEEAIKGLNG-QKP 230
Query: 210 RGCDQPLTVRFAD 222
G +P+TV+FA+
Sbjct: 231 SGAAEPITVKFAN 243
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L+ + E + ++F P+G V +V ++RD + +G GFV ++ D A AI
Sbjct: 315 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 374
Query: 202 ALNGIYTMRGCDQPLTVRFADPK 224
+LNG R D+ L V F K
Sbjct: 375 SLNG---YRLGDRVLQVSFKTNK 394
>gi|118102061|ref|XP_423721.2| PREDICTED: splicing factor 3B subunit 4 [Gallus gallus]
Length = 418
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 101/185 (54%), Gaps = 12/185 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ + KD+ TGQ QG F+++ + E+AD AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+ N L G PI+V A + L V +F+G+L+ + EK + + FS +G +
Sbjct: 73 IM-NMIKLYG--KPIRVNKASAHNKNLD-VGANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 172 V-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+MRD + S+G F+ ++ D + AAI A+NG Y C++P+TV +A D K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAFKKDSKGE 185
Query: 227 RPGDS 231
R G +
Sbjct: 186 RHGSA 190
>gi|347446713|ref|NP_571528.2| ELAV-like protein 4 isoform 3 [Danio rerio]
Length = 403
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 100/193 (51%), Gaps = 15/193 (7%)
Query: 38 RGGPSPDLVDGS---SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQG 94
R PSP GS S L V +P+ +E+ R LF G + L++DK TGQ G
Sbjct: 63 RSCPSPMQTGGSNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 122
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQ 153
F+ Y ++A++AI L+ L I+V YA R ++ + L+V L K
Sbjct: 123 YGFVNYIDPKDAEKAINTLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKT 176
Query: 154 ATEKEVEEIFSPYGRVEDVYLMRDELK----QSRGCGFVKYSHRDMALAAINALNGIYTM 209
T+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG
Sbjct: 177 MTQKELEQLFSQYGRIITSRILVDQVTGPTGGSRGVGFIRFDKRIEAEEAIKGLNG-QKP 235
Query: 210 RGCDQPLTVRFAD 222
G +P+TV+FA+
Sbjct: 236 SGAAEPITVKFAN 248
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L+ + E + ++F P+G V +V ++RD + +G GFV ++ D A AI
Sbjct: 320 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 379
Query: 202 ALNGIYTMRGCDQPLTVRFADPK 224
+LNG R D+ L V F K
Sbjct: 380 SLNG---YRLGDRVLQVSFKTNK 399
>gi|75948207|gb|AAI05267.1| SF3B4 protein [Bos taurus]
Length = 418
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 101/185 (54%), Gaps = 12/185 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ + KD+ TGQ QG F+++ + E+AD AI+
Sbjct: 7 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 66
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+ N L G PI+V A + L V +F+G+L+ + EK + + FS +G +
Sbjct: 67 IM-NMIKLYG--KPIRVNKASAHNKNLD-VGANIFIGNLDPEIDEKLLYDTFSAFGVILQ 122
Query: 172 V-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+MRD + S+G F+ ++ D + AAI A+NG Y C++P+TV +A D K
Sbjct: 123 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAFKKDSKGE 179
Query: 227 RPGDS 231
R G +
Sbjct: 180 RHGSA 184
>gi|387018636|gb|AFJ51436.1| Splicing factor 3B subunit 4-like [Crotalus adamanteus]
Length = 417
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 97/172 (56%), Gaps = 9/172 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ + KD+ TGQ QG F+++ + E+AD AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRV-E 170
+ N L G PI+V A + L V +F+G+L+ + EK + + FS +G + +
Sbjct: 73 IM-NMIKLYG--KPIRVNKASAHNKNLD-VGANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 171 DVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221
+MRD + S+G F+ ++ D + AAI A+NG Y C++P+TV +A
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYA 177
>gi|334321530|ref|XP_001373647.2| PREDICTED: ELAV-like protein 4 isoform 1 [Monodelphis domestica]
Length = 366
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 100/192 (52%), Gaps = 12/192 (6%)
Query: 36 SGRGGPSP---DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQ 92
+GR PSP S L V +P+ +E+ R LF G + L++DK TGQ
Sbjct: 27 NGRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQS 86
Query: 93 QGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLN 151
G F+ Y ++A++AI L+ L I+V YA R ++ + L+V L
Sbjct: 87 LGYGFVNYIDPKDAEKAINTLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLP 140
Query: 152 KQATEKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMR 210
K T+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG
Sbjct: 141 KTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPS 199
Query: 211 GCDQPLTVRFAD 222
G +P+TV+FA+
Sbjct: 200 GATEPITVKFAN 211
>gi|156387980|ref|XP_001634480.1| predicted protein [Nematostella vectensis]
gi|156221563|gb|EDO42417.1| predicted protein [Nematostella vectensis]
Length = 380
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 96/178 (53%), Gaps = 9/178 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E I LF + G V+ V + KD+ T QG F+++ E+AD AI+
Sbjct: 13 ATIYVGGLDEKVSEALIWELFLQSGPVVNVHMPKDRITQLHQGYGFVEFLGEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+ N + G PI+V A + L V LF+G+L+ + EK + + FS +G +
Sbjct: 73 VM-NMIKVYG--KPIRVNKASAHNKNLD-VGANLFIGNLDTEVDEKLLYDTFSAFGVILQ 128
Query: 172 V-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+MRD + S+G F+ ++ D + AAI A+NG Y C++P+TV +A K +
Sbjct: 129 TPKIMRDSDTGNSKGFAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAFKKESK 183
>gi|340383337|ref|XP_003390174.1| PREDICTED: ELAV-like protein 3-like [Amphimedon queenslandica]
Length = 392
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 100/191 (52%), Gaps = 15/191 (7%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
L V +P+T EE ++ LF + G V+ LIKDK +G G F+ Y ++EEA+ AI+
Sbjct: 25 NLIVNYLPQTLTEEGLKQLFSQFGVVLSCKLIKDKSSGISLGYGFVNYGSAEEAEHAIQK 84
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYK---LFVGSLNKQATEKEVEEIFSPYGRV 169
+ N TL ++V YA R +V K ++V +L Q + E++ +F PYG +
Sbjct: 85 M-NGTTLESKT--LKVSYA-----RPSSVAIKNANVYVANLPPQLSLTELDALFQPYGTI 136
Query: 170 EDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRP 228
++ DE RG GFV++ A AI ALNG + G QPL V+FA+P P+
Sbjct: 137 ITSKVLTDEDTGAGRGVGFVRFDKYTQAEVAIAALNG-KQLVGGTQPLLVKFANP--PKA 193
Query: 229 GDSRSGPTFGG 239
+G GG
Sbjct: 194 ATPLTGTVPGG 204
>gi|347446708|ref|NP_001231529.1| ELAV-like protein 4 isoform 1 [Danio rerio]
Length = 411
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 100/193 (51%), Gaps = 15/193 (7%)
Query: 38 RGGPSPDLVDGS---SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQG 94
R PSP GS S L V +P+ +E+ R LF G + L++DK TGQ G
Sbjct: 71 RSCPSPMQTGGSNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 130
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQ 153
F+ Y ++A++AI L+ L I+V YA R ++ + L+V L K
Sbjct: 131 YGFVNYIDPKDAEKAINTLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKT 184
Query: 154 ATEKEVEEIFSPYGRVEDVYLMRDELK----QSRGCGFVKYSHRDMALAAINALNGIYTM 209
T+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG
Sbjct: 185 MTQKELEQLFSQYGRIITSRILVDQVTGPTGGSRGVGFIRFDKRIEAEEAIKGLNG-QKP 243
Query: 210 RGCDQPLTVRFAD 222
G +P+TV+FA+
Sbjct: 244 SGAAEPITVKFAN 256
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L+ + E + ++F P+G V +V ++RD + +G GFV ++ D A AI
Sbjct: 328 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 387
Query: 202 ALNGIYTMRGCDQPLTVRFADPK 224
+LNG R D+ L V F K
Sbjct: 388 SLNG---YRLGDRVLQVSFKTNK 407
>gi|358412972|ref|XP_887465.4| PREDICTED: ELAV-like protein 3 isoform 8 [Bos taurus]
Length = 511
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 7/170 (4%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
L V +P+ +++ + LF G++ L++DK TGQ G F+ Y+ +AD+AI L
Sbjct: 192 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 251
Query: 114 HNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVY 173
+ L I+V YA + + L+V L K ++KE+E++FS YGR+
Sbjct: 252 NG---LKLQTKTIKVSYARPSSASI--RDANLYVSGLPKTMSQKEMEQLFSQYGRIITSR 306
Query: 174 LMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG + G +P+TV+FA+
Sbjct: 307 ILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFAN 355
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 276 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 335
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG 139
L+ Q L G PI V++A+ ++ G
Sbjct: 336 GLNGQKPL-GAAEPITVKFANNPSQKTG 362
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L+ +A E + ++F P+G V +V ++RD + +G GFV ++ D A AI
Sbjct: 428 WCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIA 487
Query: 202 ALNGIYTMRGCDQPLTVRFADPK 224
+LNG R ++ L V F K
Sbjct: 488 SLNG---YRLGERVLQVSFKTSK 507
>gi|357460829|ref|XP_003600696.1| Splicing factor 3B subunit [Medicago truncatula]
gi|355489744|gb|AES70947.1| Splicing factor 3B subunit [Medicago truncatula]
Length = 379
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 98/175 (56%), Gaps = 9/175 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A +VG++ EE + LF + G V+ V + KD+ T Q QG F+++ + E+AD AI+
Sbjct: 25 ATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIK 84
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGR-VE 170
L N L G PI+V A +++ L V LF+G+L+ EK + + FS +G V
Sbjct: 85 VL-NMIKLYG--KPIRVNKASQDKKSLD-VGANLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
Query: 171 DVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224
+ +MRD + SRG GF+ Y + + +AI A+NG Y C++ +TV +A K
Sbjct: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYL---CNRQITVSYAYKK 192
>gi|444515113|gb|ELV10775.1| Splicing factor 3B subunit 4 [Tupaia chinensis]
Length = 355
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 101/185 (54%), Gaps = 12/185 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ + KD+ TGQ QG F+++ + E+AD AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+ N L G PI+V A + L V +F+G+L+ + EK + + FS +G +
Sbjct: 73 IM-NMIKLYG--KPIRVNKASAHNKNLD-VGANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 172 V-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+MRD + S+G F+ ++ D + AAI A+NG Y C++P+TV +A D K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAFKKDSKGE 185
Query: 227 RPGDS 231
R G +
Sbjct: 186 RHGSA 190
>gi|198425734|ref|XP_002119812.1| PREDICTED: similar to HUC, partial [Ciona intestinalis]
Length = 408
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 102/211 (48%), Gaps = 16/211 (7%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
L V +P+T +++ LF G V +I+DK++G G F+ Y E+AD+AI+
Sbjct: 84 NLIVNYLPQTLSDQEFYQLFNNVGAVTSARIIRDKQSGYSFGYGFVDYVKPEDADKAIQQ 143
Query: 113 LHNQHTLPGGVGPIQ---VRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRV 169
L N H PIQ ++ A + + L+V LN +E+ +++ FS YG +
Sbjct: 144 L-NGH-------PIQHKTIKVAFSKPAGADSKNINLYVAGLNPDTSEESLKQRFSSYGTI 195
Query: 170 EDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRP 228
+++D+ G GFV ++ +D A+AAI ALNG + PL V+FA + P
Sbjct: 196 IQTRVLKDKNTNLCSGIGFVLFNTKDEAMAAIKALNGAVFSQASTSPLVVKFAKTDQKVP 255
Query: 229 ----GDSRSGPTFGGPGFGPRFQPPSPRPPP 255
G + G T GGP G + R P
Sbjct: 256 DSFQGGNYQGKTGGGPMRGRGLKGIRGRYSP 286
>gi|198425950|ref|XP_002126161.1| PREDICTED: similar to ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D) [Ciona intestinalis]
Length = 564
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 91/175 (52%), Gaps = 15/175 (8%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
L + +P+ +ED+R LF G + LI+DK TGQ G F+ Y + +A++AI +
Sbjct: 89 NLIINYLPQAMTQEDLRNLFSSIGELESCKLIRDKLTGQSLGYGFVNYVKAADAEKAINS 148
Query: 113 LHN----QHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGR 168
L+ Q T I+V +A + + L+V L K T+++++ IF P+GR
Sbjct: 149 LNGLRMQQKT-------IKVSFARPSTPLIK--DANLYVSGLPKSMTQEDLQRIFHPFGR 199
Query: 169 -VEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
+ L+ SRG GFV++ R A AI+ALNG G P+TV+FA+
Sbjct: 200 IITSRILVEPSTGMSRGVGFVRFDKRPEAENAISALNGTIP-AGAKDPVTVKFAN 253
Score = 43.9 bits (102), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L + E + ++F P+G V V ++RD + ++ +G GFV ++ + A A+ +L
Sbjct: 484 IFVYNLAPETDENILWQLFGPFGAVTSVKVIRDYQTQKCKGYGFVTMTNYEEAFIAVCSL 543
Query: 204 NG 205
NG
Sbjct: 544 NG 545
>gi|45360881|ref|NP_989116.1| splicing factor 3b, subunit 4, 49kDa [Xenopus (Silurana)
tropicalis]
gi|38512254|gb|AAH61357.1| splicing factor 3b, subunit 4, 49kDa [Xenopus (Silurana)
tropicalis]
gi|89268695|emb|CAJ83013.1| splicing factor 3b, subunit 4, 49kDa [Xenopus (Silurana)
tropicalis]
Length = 388
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 101/185 (54%), Gaps = 12/185 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ + KD+ TGQ QG F+++ + E+AD AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+ N L G PI+V A + L V +F+G+L+ + EK + + FS +G +
Sbjct: 73 IM-NMIKLYG--KPIRVNKASAHNKNLD-VGANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 172 V-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+MRD + S+G F+ ++ D + AAI A+NG Y C++P+TV +A D K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAFKKDSKGE 185
Query: 227 RPGDS 231
R G +
Sbjct: 186 RHGSA 190
>gi|350425139|ref|XP_003494024.1| PREDICTED: ELAV-like protein 2-like [Bombus impatiens]
Length = 371
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 86/323 (26%), Positives = 142/323 (43%), Gaps = 41/323 (12%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
L V +P++ +++IR LF G V LI+DK TGQ G F+ Y E+A++AI
Sbjct: 29 NLIVNYLPQSMTQDEIRSLFASIGEVESCKLIRDKLTGQSLGYGFVNYHRPEDAEKAINT 88
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
L+ I+V YA E + L+V L K T++++E +F+PYGR+
Sbjct: 89 LNGLRLQN---KTIKVSYARPSSEAIKGAN--LYVSGLPKNMTQQDLENLFNPYGRIITS 143
Query: 173 YLMRDELKQ--------------SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218
++ D + S+G GF+++ R A AI LNG +G +P+TV
Sbjct: 144 RILCDNITVRQFVTGGGDYLPGLSKGVGFIRFDQRVEAERAIQELNGTVP-KGSSEPITV 202
Query: 219 RFADPKRPRPGDSRSGPTFGGPGFGPRFQPPSPRPPPNFGDPITDQIPQNAWHPMSPRNM 278
+FA+ P ++ P +P+ +G PI + + P+SP +
Sbjct: 203 KFAN----NPSNNNKAI--------PPLAYLAPQATRRYGGPIHHPTGRFRYIPLSPLSS 250
Query: 279 GPLSNPGIRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQAP 338
+ I + P +GDL A+ LPG A++ + + PE++
Sbjct: 251 TGKAMLAINKGLQRYSPLAGDL--------LANSMLPGNAMNGSGWCIFVYNLAPETEEN 302
Query: 339 SLGQQISPLQKPLQSPQHMPPLQ 361
L Q P +QS + + LQ
Sbjct: 303 VLWQLFGPF-GAVQSVKVIRDLQ 324
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L + E + ++F P+G V+ V ++RD + + +G GFV ++ D A+ AI
Sbjct: 288 WCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQ 347
Query: 202 ALNGIYTMRGCDQPLTVRFADPK 224
+LNG YT+ ++ L V F K
Sbjct: 348 SLNG-YTL--GNRVLQVSFKTNK 367
>gi|340502094|gb|EGR28811.1| splicing factor subunit 4, putative [Ichthyophthirius multifiliis]
Length = 267
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 93/157 (59%), Gaps = 9/157 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + +E + LF + G V+ V L KDK TG+ QG F+++ + E+AD +I+
Sbjct: 12 ATIYVGGIDQKVTQEVLWELFSQCGIVVNVHLPKDKITGEHQGYGFVEFKSEEDADYSIK 71
Query: 112 ALHNQHTLPGGVGPIQVRYA--DGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRV 169
+H L G PI+V A D + +GA +F+G+L++ TE+++ + FS +G +
Sbjct: 72 IMH-LVKLYG--KPIKVNKASQDKRTQEVGA---NIFIGNLDQSITEQQLHDTFSQFGLI 125
Query: 170 EDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNG 205
++RD + +S+G FV Y + + A AAIN +NG
Sbjct: 126 ISRRIVRDPDNDESKGYAFVSYDNFEAADAAINTMNG 162
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A +F+G++ ++ E+ + F + G +I +++D + +G F+ Y E AD AI
Sbjct: 99 ANIFIGNLDQSITEQQLHDTFSQFGLIISRRIVRDPDNDESKGYAFVSYDNFEAADAAIN 158
Query: 112 ALHNQHTLPGGVGPIQVRYA---DGERERLGAVEYKLFVGS 149
++ Q G I V+YA D + ER G+ +L +
Sbjct: 159 TMNGQFF---GSKKINVQYAFKKDSKGERHGSAAERLLAAN 196
>gi|307168947|gb|EFN61833.1| ELAV-like protein 4 [Camponotus floridanus]
Length = 466
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 87/326 (26%), Positives = 140/326 (42%), Gaps = 40/326 (12%)
Query: 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRA 109
S L V +P++ +++IR LF G V LI+DK +GQ G F+ Y E+A++A
Sbjct: 26 SKTNLIVNYLPQSMTQDEIRSLFSSIGEVESCKLIRDKLSGQSLGYGFVNYHRPEDAEKA 85
Query: 110 IRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRV 169
I L+ L I+V YA E + L+V L K ++++E +FSPYGR+
Sbjct: 86 INTLNG---LRLQNKTIKVSYARPSSEAIKGAN--LYVSGLPKNMAQQDLENLFSPYGRI 140
Query: 170 EDVYLMRDELKQ--------------SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQP 215
++ D + S+G GF+++ R A AI LNG +G +P
Sbjct: 141 ITSRILCDNITVRQFVTGGGDNLPGLSKGVGFIRFDQRVEAERAIQELNGTIP-KGSSEP 199
Query: 216 LTVRFADPKRPRPGDSRSGPTFGGPGFGPRFQPPSPRPPPNFGDPITDQIPQNAWHPMSP 275
+TV+FA+ P+ P +P+ FG PI + + P+SP
Sbjct: 200 ITVKFAN-----------NPSNNNKAIPPLAAYLAPQATRRFGGPIHHPTGRFRYIPLSP 248
Query: 276 RNMGPLSNPGIRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPES 335
+ + I + P +GDL A+ LPG ++ + PE+
Sbjct: 249 LSSTGKAMLAINKGLQRYSPLAGDL--------LANSMLPGNTMNGAGWCIFVYNLAPET 300
Query: 336 QAPSLGQQISPLQKPLQSPQHMPPLQ 361
+ L Q P +QS + + LQ
Sbjct: 301 EENVLWQLFGPF-GAVQSVKVIRDLQ 325
>gi|327290521|ref|XP_003229971.1| PREDICTED: splicing factor 3B subunit 4-like [Anolis carolinensis]
Length = 417
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 96/172 (55%), Gaps = 9/172 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ + KD+ TGQ QG F+++ + E+AD AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+ N L G PI+V A + L V +F+G+L+ + EK + + FS +G +
Sbjct: 73 IM-NMIKLYG--KPIRVNKASAHNKNLD-VGANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 172 V-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221
+MRD + S+G F+ ++ D + AAI A+NG Y C++P+TV +A
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYA 177
>gi|432114293|gb|ELK36221.1| Splicing factor 3B subunit 4 [Myotis davidii]
Length = 379
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 101/185 (54%), Gaps = 12/185 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ + KD+ TGQ QG F+++ + E+AD AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+ N L G PI+V A + L V +F+G+L+ + EK + + FS +G +
Sbjct: 73 IM-NMIKLYG--KPIRVNKASAHNKNLD-VGANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 172 V-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+MRD + S+G F+ ++ D + AAI A+NG Y C++P+TV +A D K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAFKKDSKGE 185
Query: 227 RPGDS 231
R G +
Sbjct: 186 RHGSA 190
>gi|305855162|ref|NP_001182263.1| ELAV-like protein 1 [Sus scrofa]
gi|285818484|gb|ADC38915.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 [Sus
scrofa]
gi|456753432|gb|JAA74168.1| ELAV-like 1 (Hu antigen R) [Sus scrofa]
Length = 326
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 119/248 (47%), Gaps = 20/248 (8%)
Query: 42 SPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYA 101
+ D D L V +P+ +E++R LF G + LI+DK G G F+ Y
Sbjct: 10 AEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYV 69
Query: 102 TSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEE 161
T+++A+RAI L+ L I+V YA E + + L++ L + T+K+VE+
Sbjct: 70 TAKDAERAINTLNG---LRLQSKTIKVSYARPSSEVIK--DANLYISGLPRTMTQKDVED 124
Query: 162 IFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220
+FSP+GR+ + ++ D+ SRG F+++ R A AI + NG + G +P+TV+F
Sbjct: 125 MFSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG-HKPPGSSEPITVKF 183
Query: 221 ADPKRPRPGDSRSGPTFGGPGFGPRFQPPSPRPPPNFGDPITDQIPQNAWHPMSPRNMGP 280
A P +++ + P+ R FG P+ Q + + PM +M
Sbjct: 184 A----ANPNQNKNVAL-----LSQLYHSPARR----FGGPVHHQAQRFRFSPMGVDHMSG 230
Query: 281 LSNPGIRG 288
LS + G
Sbjct: 231 LSGVNVPG 238
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 92/225 (40%), Gaps = 59/225 (26%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCF-------------- 97
A L++ +P+T ++D+ +F G +I ++ D+ TG +G F
Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165
Query: 98 ---------------IKYATSEEADRAIRALHNQHTLP----GG----------VGPIQV 128
+K+A + ++ + L + P GG P+ V
Sbjct: 166 SFNGHKPPGSSEPITVKFAANPNQNKNVALLSQLYHSPARRFGGPVHHQAQRFRFSPMGV 225
Query: 129 RYADGERERLGAVE--------YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-EL 179
+ G L V + +F+ +L + A E + ++F P+G V +V ++RD
Sbjct: 226 DHMSG----LSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNT 281
Query: 180 KQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224
+ +G GFV ++ + A AI +LNG R D+ L V F K
Sbjct: 282 NKCKGFGFVTMTNYEEASMAIASLNG---YRLGDKILQVSFKTNK 323
>gi|386769529|ref|NP_001245999.1| bruno-2, isoform H [Drosophila melanogaster]
gi|386769535|ref|NP_001246002.1| bruno-2, isoform J [Drosophila melanogaster]
gi|226371828|gb|ACO51539.1| MIP06224p [Drosophila melanogaster]
gi|383291457|gb|AFH03673.1| bruno-2, isoform H [Drosophila melanogaster]
gi|383291460|gb|AFH03676.1| bruno-2, isoform J [Drosophila melanogaster]
Length = 651
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 59/86 (68%)
Query: 142 EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAIN 201
E KLFVG LNK+ TE +V ++F+ +G +E+ ++RD+ QS+GC FV ++ + A+ AI
Sbjct: 139 ERKLFVGMLNKKYTEADVRQLFTGHGTIEECTVLRDQAGQSKGCAFVTFATKQNAIGAIK 198
Query: 202 ALNGIYTMRGCDQPLTVRFADPKRPR 227
AL+ TM GC PL V+FAD ++ +
Sbjct: 199 ALHQSQTMEGCSAPLVVKFADTQKEK 224
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K E D+R LF HG + E +++D+ GQ +GC F+ +AT + A AI+A
Sbjct: 141 KLFVGMLNKKYTEADVRQLFTGHGTIEECTVLRDQA-GQSKGCAFVTFATKQNAIGAIKA 199
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH T+ G P+ V++AD ++E+
Sbjct: 200 LHQSQTMEGCSAPLVVKFADTQKEK 224
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEE 105
++G + LF+ +P+ + D+ F GNV+ + DK+T + F+ Y
Sbjct: 560 IEGPDGSNLFIYHLPQEFIDTDLASTFLPFGNVLSAKVFIDKQTNLSKCFGFVSYDNPHS 619
Query: 106 ADRAIRALH 114
A+ AI+A+H
Sbjct: 620 ANAAIQAMH 628
>gi|242003642|ref|XP_002436197.1| conserved hypothetical protein [Ixodes scapularis]
gi|215499533|gb|EEC09027.1| conserved hypothetical protein [Ixodes scapularis]
Length = 170
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 58/86 (67%)
Query: 142 EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAIN 201
E KLF+G L K+ E +V +FSP+G +E+ ++RD QS+GC FV Y+ R A+ AI
Sbjct: 6 ERKLFIGMLAKECNESDVRVMFSPFGSIEECTVLRDGSGQSKGCAFVTYASRQCAINAIK 65
Query: 202 ALNGIYTMRGCDQPLTVRFADPKRPR 227
A+N TM+GC+ P+ V+FAD ++ +
Sbjct: 66 AMNHSQTMKGCNNPMVVKFADTQKEK 91
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G + K E D+R +F G++ E +++D +GQ +GC F+ YA+ + A AI+A
Sbjct: 8 KLFIGMLAKECNESDVRVMFSPFGSIEECTVLRDG-SGQSKGCAFVTYASRQCAINAIKA 66
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
+++ T+ G P+ V++AD ++E+
Sbjct: 67 MNHSQTMKGCNNPMVVKFADTQKEK 91
>gi|355557990|gb|EHH14770.1| hypothetical protein EGK_00744 [Macaca mulatta]
Length = 385
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 91/172 (52%), Gaps = 7/172 (4%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
L+ L I+V YA + + L+V L K T+KE+E++FS YGR+
Sbjct: 111 TLNG---LRLQTKTIKVSYARPSSASIR--DANLYVSGLPKTMTQKELEQLFSQYGRIIT 165
Query: 172 VYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 166 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 216
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L+ + E + ++F P+G V +V ++RD + +G GFV ++ D A AI
Sbjct: 302 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 361
Query: 202 ALNGIYTMRGCDQPLTVRFADPK 224
+LNG R D+ L V F K
Sbjct: 362 SLNG---YRLGDRVLQVSFKTNK 381
>gi|194911931|ref|XP_001982402.1| GG12756 [Drosophila erecta]
gi|190648078|gb|EDV45371.1| GG12756 [Drosophila erecta]
Length = 466
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 92/172 (53%), Gaps = 8/172 (4%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
L V +P+T E++IR LF G + V LI+DK GQ G F+ Y ++A++A+
Sbjct: 146 NLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQGQSLGYGFVNYVRPQDAEQAVNV 205
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
L+ I+V +A + + L+V L K T++E+E IF+P+G +
Sbjct: 206 LNGLRLQN---KTIKVSFARPSSDAIKGAN--LYVSGLPKTMTQQELEAIFAPFGAIITS 260
Query: 173 YLMRD--ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++++ Q++G GF+++ R+ A AI ALNG T C P+ V+F++
Sbjct: 261 RILQNAGNDTQTKGVGFIRFDKREEATRAIIALNGT-TPSSCTDPIVVKFSN 311
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
Y +F+ +L + E + ++F P+G V+ V +++D Q +G GFV ++ D A AI
Sbjct: 385 YPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIR 444
Query: 202 ALNGIYTMRGCDQPLTVRFADPK 224
ALNG YTM ++ L V F K
Sbjct: 445 ALNG-YTM--GNRVLQVSFKTNK 464
>gi|355755476|gb|EHH59223.1| Hu-antigen C, partial [Macaca fascicularis]
Length = 237
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 100/188 (53%), Gaps = 14/188 (7%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G G + D S L V +P+ +++ + LF G++ L++DK TGQ G
Sbjct: 28 GTNGATDD-----SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYG 82
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQAT 155
F+ Y+ +AD+AI L+ L I+V YA R ++ + L+V L K +
Sbjct: 83 FVNYSDPNDADKAINTLNG---LKLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMS 136
Query: 156 EKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQ 214
+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG + G +
Sbjct: 137 QKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAE 195
Query: 215 PLTVRFAD 222
P+TV+FA+
Sbjct: 196 PITVKFAN 203
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 124 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 183
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG 139
L+ Q L G PI V++A+ ++ G
Sbjct: 184 GLNGQKPL-GAAEPITVKFANNPSQKTG 210
>gi|303275187|ref|XP_003056892.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461244|gb|EEH58537.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 302
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 100/180 (55%), Gaps = 13/180 (7%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG++ EE + +F + G V+ V + KD+ + QG F+++A E+AD AI+
Sbjct: 8 ATIYVGNLDLACTEEILWEVFVQAGPVVNVYVPKDRVSNAHQGYGFVEFANEEDADYAIK 67
Query: 112 ALHNQHTLPGGVGPIQVRYA--DGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRV 169
L N L G P++V A D + +GA LFVG+L+ + EK + + FS +G V
Sbjct: 68 VL-NMIKLHG--KPVRVNKASQDKKSNDVGA---NLFVGNLDSELDEKLLYDTFSAFGVV 121
Query: 170 EDV-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+MRD + SRG GFV Y + A AAI A+NG + C++P++V FA K R
Sbjct: 122 ITTPKIMRDPDSGNSRGFGFVSYDSFEAADAAIEAMNGQFL---CNRPISVTFAYKKDTR 178
>gi|355718837|gb|AES06403.1| splicing factor 3b, subunit 4, 49kDa [Mustela putorius furo]
Length = 406
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 101/185 (54%), Gaps = 12/185 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ + KD+ TGQ QG F+++ + E+AD AI+
Sbjct: 11 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 70
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+ N L G PI+V A + L V +F+G+L+ + EK + + FS +G +
Sbjct: 71 IM-NMIKLYG--KPIRVNKASAHNKNLD-VGANIFIGNLDPEIDEKLLYDTFSAFGVILQ 126
Query: 172 V-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+MRD + S+G F+ ++ D + AAI A+NG Y C++P+TV +A D K
Sbjct: 127 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAFKKDSKGE 183
Query: 227 RPGDS 231
R G +
Sbjct: 184 RHGSA 188
>gi|84662766|ref|NP_034618.2| ELAV-like protein 4 isoform a [Mus musculus]
gi|354468156|ref|XP_003496533.1| PREDICTED: ELAV-like protein 4 isoform 3 [Cricetulus griseus]
gi|2500580|sp|Q61701.1|ELAV4_MOUSE RecName: Full=ELAV-like protein 4; AltName: Full=Hu-antigen D;
Short=HuD; AltName: Full=Paraneoplastic
encephalomyelitis antigen HuD
gi|603495|dbj|BAA06723.1| HuD [Mus musculus]
gi|440906869|gb|ELR57085.1| ELAV-like protein 4 [Bos grunniens mutus]
Length = 385
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 91/172 (52%), Gaps = 7/172 (4%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
L+ L I+V YA + + L+V L K T+KE+E++FS YGR+
Sbjct: 111 TLNG---LRLQTKTIKVSYARPSSASIR--DANLYVSGLPKTMTQKELEQLFSQYGRIIT 165
Query: 172 VYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 166 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 216
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L+ + E + ++F P+G V +V ++RD + +G GFV ++ D A AI
Sbjct: 302 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 361
Query: 202 ALNGIYTMRGCDQPLTVRFADPK 224
+LNG R D+ L V F K
Sbjct: 362 SLNG---YRLGDRVLQVSFKTNK 381
>gi|117647212|ref|NP_001071119.1| ELAV-like protein 4 [Rattus norvegicus]
gi|2500581|sp|O09032.1|ELAV4_RAT RecName: Full=ELAV-like protein 4; AltName: Full=Hu-antigen D;
Short=HuD; AltName: Full=Paraneoplastic
encephalomyelitis antigen HuD
gi|1911579|gb|AAB50733.1| HuD [Rattus sp.]
gi|165970854|gb|AAI58559.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D) [Rattus norvegicus]
Length = 373
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 91/172 (52%), Gaps = 7/172 (4%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 39 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
L+ L I+V YA + + L+V L K T+KE+E++FS YGR+
Sbjct: 99 TLNG---LRLQTKTIKVSYARPSSASIR--DANLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 172 VYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 204
Score = 47.8 bits (112), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L+ + E + ++F P+G V +V ++RD + +G GFV ++ D A AI
Sbjct: 290 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 349
Query: 202 ALNGIYTMRGCDQPLTVRFADPK 224
+LNG R D+ L V F K
Sbjct: 350 SLNG---YRLGDRVLQVSFKTNK 369
>gi|351713507|gb|EHB16426.1| ELAV-like protein 4 [Heterocephalus glaber]
Length = 385
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 91/172 (52%), Gaps = 7/172 (4%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
L+ L I+V YA + + L+V L K T+KE+E++FS YGR+
Sbjct: 111 TLNG---LRLQTKTIKVSYARPSSASIR--DANLYVSGLPKTMTQKELEQLFSQYGRIIT 165
Query: 172 VYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 166 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 216
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L+ + E + ++F P+G V +V ++RD + +G GFV ++ D A AI
Sbjct: 302 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 361
Query: 202 ALNGIYTMRGCDQPLTVRFADPK 224
+LNG R D+ L V F K
Sbjct: 362 SLNG---YRLGDRVLQVSFKTNK 381
>gi|134026264|gb|AAI36135.1| ELAV (embryonic lethal, abnormal vision)-like 3 (Hu antigen C)
[Xenopus (Silurana) tropicalis]
Length = 342
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 99/190 (52%), Gaps = 14/190 (7%)
Query: 35 FSGRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQG 94
+G G + D S L V +P+ +E+ + LF G + L++DK TGQ G
Sbjct: 23 LNGTNGAADD-----SKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLG 77
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQ 153
F+ Y +AD+AI L+ L I+V YA R ++ + L+V SL K
Sbjct: 78 YGFVNYVDPNDADKAINTLNG---LKLQTKTIKVSYA---RPSSASIRDANLYVSSLPKT 131
Query: 154 ATEKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGC 212
+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG + G
Sbjct: 132 MNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GA 190
Query: 213 DQPLTVRFAD 222
+P+TV+FA+
Sbjct: 191 SEPITVKFAN 200
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 103/226 (45%), Gaps = 53/226 (23%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V S+PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 121 ANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 180
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG-----------AVEYK---------------- 144
L+ Q L G PI V++A+ ++ G A Y
Sbjct: 181 GLNGQKPL-GASEPITVKFANNPSQKTGQALLTHLYQTTARRYTGPLHHQTQRFRFSPIT 239
Query: 145 ---------------------LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQS 182
+FV +L+ +A E + ++F P+G V +V ++RD +
Sbjct: 240 IDSVTNLAGVSLTGPTTAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKC 299
Query: 183 RGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRP 228
+G GFV ++ D A AI +LNG R D+ L V F K+ +
Sbjct: 300 KGFGFVTMTNYDEAAMAIASLNG---YRLGDRVLQVSFKTSKQHKA 342
>gi|221316765|ref|NP_068771.2| ELAV-like protein 4 isoform 1 [Homo sapiens]
gi|114556466|ref|XP_001134946.1| PREDICTED: ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 isoform 2 [Pan troglodytes]
gi|332219811|ref|XP_003259051.1| PREDICTED: ELAV-like protein 4 isoform 6 [Nomascus leucogenys]
gi|395855045|ref|XP_003799982.1| PREDICTED: ELAV-like protein 4 isoform 5 [Otolemur garnettii]
gi|397518912|ref|XP_003829619.1| PREDICTED: ELAV-like protein 4 isoform 6 [Pan paniscus]
gi|402854513|ref|XP_003891912.1| PREDICTED: ELAV-like protein 4 isoform 6 [Papio anubis]
gi|426329583|ref|XP_004025818.1| PREDICTED: ELAV-like protein 4 isoform 6 [Gorilla gorilla gorilla]
gi|223590202|sp|P26378.2|ELAV4_HUMAN RecName: Full=ELAV-like protein 4; AltName: Full=Hu-antigen D;
Short=HuD; AltName: Full=Paraneoplastic
encephalomyelitis antigen HuD
gi|380810344|gb|AFE77047.1| ELAV-like protein 4 isoform 1 [Macaca mulatta]
Length = 380
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 91/172 (52%), Gaps = 7/172 (4%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
L+ L I+V YA + + L+V L K T+KE+E++FS YGR+
Sbjct: 106 TLNG---LRLQTKTIKVSYARPSSASIR--DANLYVSGLPKTMTQKELEQLFSQYGRIIT 160
Query: 172 VYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 161 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 211
Score = 47.8 bits (112), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L+ + E + ++F P+G V +V ++RD + +G GFV ++ D A AI
Sbjct: 297 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 356
Query: 202 ALNGIYTMRGCDQPLTVRFADPK 224
+LNG R D+ L V F K
Sbjct: 357 SLNG---YRLGDRVLQVSFKTNK 376
>gi|390465926|ref|XP_003733492.1| PREDICTED: ELAV-like protein 4 isoform 5 [Callithrix jacchus]
gi|403258123|ref|XP_003921628.1| PREDICTED: ELAV-like protein 4 isoform 4 [Saimiri boliviensis
boliviensis]
Length = 380
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 91/172 (52%), Gaps = 7/172 (4%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
L+ L I+V YA + + L+V L K T+KE+E++FS YGR+
Sbjct: 106 TLNG---LRLQTKTIKVSYARPSSASIR--DANLYVSGLPKTMTQKELEQLFSQYGRIIT 160
Query: 172 VYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 161 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 211
Score = 47.8 bits (112), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L+ + E + ++F P+G V +V ++RD + +G GFV ++ D A AI
Sbjct: 297 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 356
Query: 202 ALNGIYTMRGCDQPLTVRFADPK 224
+LNG R D+ L V F K
Sbjct: 357 SLNG---YRLGDRVLQVSFKTNK 376
>gi|149693657|ref|XP_001492578.1| PREDICTED: ELAV-like protein 4 isoform 4 [Equus caballus]
Length = 380
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 91/172 (52%), Gaps = 7/172 (4%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
L+ L I+V YA + + L+V L K T+KE+E++FS YGR+
Sbjct: 106 TLNG---LRLQTKTIKVSYARPSSASIR--DANLYVSGLPKTMTQKELEQLFSQYGRIIT 160
Query: 172 VYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 161 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 211
Score = 47.8 bits (112), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L+ + E + ++F P+G V +V ++RD + +G GFV ++ D A AI
Sbjct: 297 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 356
Query: 202 ALNGIYTMRGCDQPLTVRFADPK 224
+LNG R D+ L V F K
Sbjct: 357 SLNG---YRLGDRVLQVSFKTNK 376
>gi|116788830|gb|ABK25016.1| unknown [Picea sitchensis]
Length = 290
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 101/180 (56%), Gaps = 9/180 (5%)
Query: 51 FAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAI 110
+ KLFVG++P + + LFE G V++V +I D++TG +G F+ T EEA++ +
Sbjct: 112 WTKLFVGNLPFNLDNQQLGELFEGAGEVLDVNIITDRETGNSRGFGFVTMGTVEEAEKGV 171
Query: 111 RALHNQHTLPGGVGPIQVRYADGER-ER---LGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
L N+H+L G + + G + ER G+ K++VG+L QA + + ++FS +
Sbjct: 172 E-LFNRHSLEGRLLTVNKAAPRGTKVERPSQAGSSTNKIYVGNLPWQADDNSLLQLFSEH 230
Query: 167 GRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKR 225
G+V + ++ D E +SRG GFV YS AI AL+G M G +PL V A+ +R
Sbjct: 231 GKVLEARVVYDRETGRSRGFGFVTYSSESEVNDAIAALDGT-DMDG--RPLRVNIAEDRR 287
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEAD 107
GSS K++VG++P A + + LF EHG V+E ++ D++TG+ +G F+ Y++ E +
Sbjct: 203 GSSTNKIYVGNLPWQADDNSLLQLFSEHGKVLEARVVYDRETGRSRGFGFVTYSSESEVN 262
Query: 108 RAIRALHNQHTLPGGVGPIQVRYADGER 135
AI AL + G P++V A+ R
Sbjct: 263 DAIAALDGTD-MDG--RPLRVNIAEDRR 287
>gi|297664977|ref|XP_002810889.1| PREDICTED: ELAV-like protein 4 isoform 2 [Pongo abelii]
Length = 380
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 91/172 (52%), Gaps = 7/172 (4%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
L+ L I+V YA + + L+V L K T+KE+E++FS YGR+
Sbjct: 106 TLNG---LRLQTKTIKVSYARPSSASIR--DANLYVSGLPKTMTQKELEQLFSQYGRIIT 160
Query: 172 VYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 161 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 211
Score = 47.8 bits (112), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L+ + E + ++F P+G V +V ++RD + +G GFV ++ D A AI
Sbjct: 297 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 356
Query: 202 ALNGIYTMRGCDQPLTVRFADPK 224
+LNG R D+ L V F K
Sbjct: 357 SLNG---YRLGDRVLQVSFKTNK 376
>gi|608549|gb|AAA96940.1| ribonucleoprotein [Danio rerio]
gi|68085524|gb|AAH65965.2| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D) [Danio rerio]
Length = 367
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 100/193 (51%), Gaps = 15/193 (7%)
Query: 38 RGGPSPDLVDGS---SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQG 94
R PSP GS S L V +P+ +E+ R LF G + L++DK TGQ G
Sbjct: 27 RSCPSPMQTGGSNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 86
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQ 153
F+ Y ++A++AI L+ L I+V YA R ++ + L+V L K
Sbjct: 87 YGFVNYIDPKDAEKAINTLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKT 140
Query: 154 ATEKEVEEIFSPYGRVEDVYLMRDELK----QSRGCGFVKYSHRDMALAAINALNGIYTM 209
T+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG
Sbjct: 141 MTQKELEQLFSQYGRIITSRILVDQVTGPTGGSRGVGFIRFDKRIEAEEAIKGLNG-QKP 199
Query: 210 RGCDQPLTVRFAD 222
G +P+TV+FA+
Sbjct: 200 SGAAEPITVKFAN 212
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L+ + E + ++F P+G V +V ++RD + +G GFV ++ D A AI
Sbjct: 284 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 343
Query: 202 ALNGIYTMRGCDQPLTVRFADPK 224
+LNG R D+ L V F K
Sbjct: 344 SLNG---YRLGDRVLQVSFKTNK 363
>gi|84662764|ref|NP_001033787.1| ELAV-like protein 4 isoform b [Mus musculus]
gi|291398924|ref|XP_002715150.1| PREDICTED: ELAV-like 4-like isoform 1 [Oryctolagus cuniculus]
gi|426215488|ref|XP_004002004.1| PREDICTED: ELAV-like protein 4 isoform 4 [Ovis aries]
gi|26347767|dbj|BAC37532.1| unnamed protein product [Mus musculus]
gi|112180554|gb|AAH52451.2| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D) [Mus musculus]
Length = 380
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 91/172 (52%), Gaps = 7/172 (4%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
L+ L I+V YA + + L+V L K T+KE+E++FS YGR+
Sbjct: 106 TLNG---LRLQTKTIKVSYARPSSASIR--DANLYVSGLPKTMTQKELEQLFSQYGRIIT 160
Query: 172 VYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 161 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 211
Score = 47.8 bits (112), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L+ + E + ++F P+G V +V ++RD + +G GFV ++ D A AI
Sbjct: 297 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 356
Query: 202 ALNGIYTMRGCDQPLTVRFADPK 224
+LNG R D+ L V F K
Sbjct: 357 SLNG---YRLGDRVLQVSFKTNK 376
>gi|281347138|gb|EFB22722.1| hypothetical protein PANDA_010481 [Ailuropoda melanoleuca]
Length = 377
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 91/172 (52%), Gaps = 7/172 (4%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 43 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 102
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
L+ L I+V YA + + L+V L K T+KE+E++FS YGR+
Sbjct: 103 TLNG---LRLQTKTIKVSYARPSSASIR--DANLYVSGLPKTMTQKELEQLFSQYGRIIT 157
Query: 172 VYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 158 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 208
Score = 47.8 bits (112), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L+ + E + ++F P+G V +V ++RD + +G GFV ++ D A AI
Sbjct: 294 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 353
Query: 202 ALNGIYTMRGCDQPLTVRFADPK 224
+LNG R D+ L V F K
Sbjct: 354 SLNG---YRLGDRVLQVSFKTNK 373
>gi|405967996|gb|EKC33105.1| CUG-BP- and ETR-3-like factor 4 [Crassostrea gigas]
Length = 349
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 59/86 (68%)
Query: 142 EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAIN 201
+ KLFVG LNKQ TE +V ++F P+G +E+ ++RD+ S+GC FVK+S + A +AIN
Sbjct: 37 DRKLFVGMLNKQQTEDDVRQLFQPFGNIEECTILRDQNGNSKGCAFVKFSGHNEAQSAIN 96
Query: 202 ALNGIYTMRGCDQPLTVRFADPKRPR 227
AL+G TM G L V+FAD ++ R
Sbjct: 97 ALHGSQTMPGASSSLVVKFADTEKER 122
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K E+D+R LF+ GN+ E +++D+ G +GC F+K++ EA AI A
Sbjct: 39 KLFVGMLNKQQTEDDVRQLFQPFGNIEECTILRDQN-GNSKGCAFVKFSGHNEAQSAINA 97
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH T+PG + V++AD E+ER
Sbjct: 98 LHGSQTMPGASSSLVVKFADTEKER 122
>gi|62898205|dbj|BAD97042.1| splicing factor 3b, subunit 4 variant [Homo sapiens]
Length = 424
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 101/185 (54%), Gaps = 12/185 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ + KD+ TGQ QG F+++ + E+AD AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+ + L G PI+V A + L V +F+G+L+ + EK + + FS +G +
Sbjct: 73 IM-DMIKLYG--KPIRVNKASAHNKNLD-VGANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 172 V-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+MRD + S+G F+ ++ D + AAI A+NG Y C++P+TV +A D K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAFKKDSKGE 185
Query: 227 RPGDS 231
R G +
Sbjct: 186 RHGSA 190
>gi|73977005|ref|XP_860272.1| PREDICTED: ELAV-like protein 4 isoform 15 [Canis lupus familiaris]
Length = 380
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 91/172 (52%), Gaps = 7/172 (4%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
L+ L I+V YA + + L+V L K T+KE+E++FS YGR+
Sbjct: 106 TLNG---LRLQTKTIKVSYARPSSASIR--DANLYVSGLPKTMTQKELEQLFSQYGRIIT 160
Query: 172 VYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 161 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 211
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L+ + E + ++F P+G V +V ++RD + +G GFV ++ D A AI
Sbjct: 297 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 356
Query: 202 ALNGIYTMRGCDQPLTVRFADPK 224
+LNG R D+ L V F K
Sbjct: 357 SLNG---YRLGDRVLQVSFKTNK 376
>gi|168024568|ref|XP_001764808.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684102|gb|EDQ70507.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 414
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 100/183 (54%), Gaps = 12/183 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A +VG++ EE + LF + G V+ V + KD+ T QG FI++ + ++AD AI+
Sbjct: 25 ATAYVGNLDSQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEDDADYAIK 84
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGR-VE 170
L N L G PI+V A +++ L V LFVG+L+ EK + + FS +G V
Sbjct: 85 IL-NMIKLYG--KPIRVNKASQDKKSL-DVGANLFVGNLDPDVDEKLLYDTFSAFGVIVT 140
Query: 171 DVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+ +MRD + SRG GF+ Y + + +AI A+NG Y C++ +TV +A D K
Sbjct: 141 NPKIMRDPDSGNSRGFGFISYDSFEASDSAIEAMNGQYL---CNRAITVSYAYKKDTKGE 197
Query: 227 RPG 229
R G
Sbjct: 198 RHG 200
>gi|179537|gb|AAA58396.1| brain protein [Homo sapiens]
gi|14280329|gb|AAK57541.1| HUDPRO1 [Homo sapiens]
gi|119627247|gb|EAX06842.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D), isoform CRA_b [Homo sapiens]
Length = 380
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 91/172 (52%), Gaps = 7/172 (4%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
L+ L I+V YA + + L+V L K T+KE+E++FS YGR+
Sbjct: 106 TLNG---LRLQTKTIKVSYARPSSASIR--DANLYVSGLPKTMTQKELEQLFSQYGRIIT 160
Query: 172 VYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 161 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 211
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L+ + E + ++F P+G V +V ++RD + +G GFV ++ D A AI
Sbjct: 297 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 356
Query: 202 ALNGIYTMRGCDQPLTVRFADPK 224
+LNG R D+ L V F K
Sbjct: 357 SLNG---YRLGDRVLQVSFKTNK 376
>gi|148224170|ref|NP_001084080.1| ELAV-like protein 3 [Xenopus laevis]
gi|82245647|sp|Q91584.1|ELAV3_XENLA RecName: Full=ELAV-like protein 3; AltName: Full=Protein ElrC
gi|608541|gb|AAA96944.1| ribonucleoprotein [Xenopus laevis]
Length = 348
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 99/190 (52%), Gaps = 14/190 (7%)
Query: 35 FSGRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQG 94
+G G + D S L V +P+ +E+ + LF G + L++DK TGQ G
Sbjct: 22 LNGTNGEADD-----SKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLG 76
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQ 153
F+ Y +AD+AI L+ L I+V YA R ++ + L+V SL K
Sbjct: 77 YGFVNYVDPNDADKAINTLNG---LKLQTKTIKVSYA---RPSSASIRDANLYVSSLPKT 130
Query: 154 ATEKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGC 212
+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG + G
Sbjct: 131 MNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GA 189
Query: 213 DQPLTVRFAD 222
+P+TV+FA+
Sbjct: 190 SEPITVKFAN 199
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V S+PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 120 ANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 179
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG 139
L+ Q L G PI V++A+ ++ G
Sbjct: 180 GLNGQKPL-GASEPITVKFANNPSQKTG 206
Score = 48.9 bits (115), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L+ +A E + ++F P+G V +V ++RD + +G GFV ++ D A AI
Sbjct: 265 WCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIA 324
Query: 202 ALNGIYTMRGCDQPLTVRFADPKRPR 227
+LNG R D+ L V F K+ +
Sbjct: 325 SLNG---YRLGDRVLQVSFKTSKQHK 347
>gi|47225636|emb|CAG07979.1| unnamed protein product [Tetraodon nigroviridis]
Length = 382
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 98/185 (52%), Gaps = 13/185 (7%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
GP+ D S L V +P+ +E+ R LF G + L++DK TGQ G F+
Sbjct: 37 GPTND----DSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVN 92
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKE 158
Y ++A++AI L+ L I+V YA R ++ + L+V L K T+KE
Sbjct: 93 YIDPKDAEKAINTLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKE 146
Query: 159 VEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG G +P+T
Sbjct: 147 LEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRVEAEEAIKGLNG-QKPSGAAEPIT 205
Query: 218 VRFAD 222
V+FA+
Sbjct: 206 VKFAN 210
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L+ + E + ++F P+G V +V ++RD + +G GFV ++ D A AI
Sbjct: 299 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 358
Query: 202 ALNGIYTMRGCDQPLTVRFADPK 224
+LNG R D+ L V F K
Sbjct: 359 SLNG---YRLGDRVLQVSFKTNK 378
>gi|307194503|gb|EFN76795.1| ELAV-like protein 2 [Harpegnathos saltator]
Length = 349
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 92/170 (54%), Gaps = 7/170 (4%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
L V +P++ +++IR LF G V LI+DK +GQ G F+ Y E+A++AI L
Sbjct: 29 LIVNYLPQSMTQDEIRSLFSSIGEVESCKLIRDKLSGQSLGYGFVNYHRPEDAEKAISTL 88
Query: 114 HNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVY 173
+ L I+V YA E + L+V L K ++++E +FSPYGR+
Sbjct: 89 NG---LRLQNKTIKVSYARPSSEAIKGAN--LYVSGLPKNMAQQDLENLFSPYGRIITSR 143
Query: 174 LMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D + S+G GF+++ R A AI LNG +G +P+TV+FA+
Sbjct: 144 ILCDNITGLSKGVGFIRFDQRVEAERAIQELNGTIP-KGSSEPITVKFAN 192
Score = 45.4 bits (106), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L + E + ++F P+G V+ V ++RD + + +G GFV ++ + A+ AI
Sbjct: 266 WCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYEEAVVAIQ 325
Query: 202 ALNGIYTMRGCDQPLTVRFADPK 224
+LNG YT+ ++ L V F K
Sbjct: 326 SLNG-YTL--GNRVLQVSFKTNK 345
>gi|355745275|gb|EHH49900.1| hypothetical protein EGM_00635 [Macaca fascicularis]
Length = 289
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 10/191 (5%)
Query: 36 SGRGGPSP---DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQ 92
+ R PSP S L V +P+ +E+ R LF G + L++DK TGQ
Sbjct: 44 NNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQS 103
Query: 93 QGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNK 152
G F+ Y ++A++AI L+ L I+V YA + + L+V L K
Sbjct: 104 LGYGFVNYIDPKDAEKAINTLNG---LRLQTKTIKVSYARPSSASIR--DANLYVSGLPK 158
Query: 153 QATEKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRG 211
T+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG G
Sbjct: 159 TMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSG 217
Query: 212 CDQPLTVRFAD 222
+P+TV+FA+
Sbjct: 218 ATEPITVKFAN 228
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 149 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 208
Query: 112 ALHNQHTLPGGVGPIQVRYADG 133
L+ Q G PI V++A+
Sbjct: 209 GLNGQKP-SGATEPITVKFANN 229
>gi|195347400|ref|XP_002040241.1| GM19036 [Drosophila sechellia]
gi|195564435|ref|XP_002105824.1| GD16475 [Drosophila simulans]
gi|194121669|gb|EDW43712.1| GM19036 [Drosophila sechellia]
gi|194203185|gb|EDX16761.1| GD16475 [Drosophila simulans]
Length = 466
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 92/172 (53%), Gaps = 8/172 (4%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
L V +P+T E++IR LF G + V LI+DK GQ G F+ Y ++A++A+
Sbjct: 146 NLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQGQSLGYGFVNYVRPQDAEQAVNV 205
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
L+ I+V +A + + L+V L K T++E+E IF+P+G +
Sbjct: 206 LNGLRLQN---KTIKVSFARPSSDAIKGAN--LYVSGLPKTMTQQELEAIFAPFGAIITS 260
Query: 173 YLMRD--ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++++ Q++G GF+++ R+ A AI ALNG T C P+ V+F++
Sbjct: 261 RILQNAGNDTQTKGVGFIRFDKREEATRAIIALNGT-TPSSCTDPIVVKFSN 311
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
Y +F+ +L + E + ++F P+G V+ V +++D Q +G GFV ++ D A AI
Sbjct: 385 YPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIR 444
Query: 202 ALNGIYTMRGCDQPLTVRFADPK 224
ALNG YTM ++ L V F K
Sbjct: 445 ALNG-YTM--GNRVLQVSFKTNK 464
>gi|403302777|ref|XP_003942029.1| PREDICTED: splicing factor 3B subunit 4 [Saimiri boliviensis
boliviensis]
Length = 424
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 101/185 (54%), Gaps = 12/185 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ + KD+ TGQ QG F+++ + E+AD AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+ N L G PI+V A + L V +F+G+L+ + EK + + FS +G +
Sbjct: 73 IM-NMIKLYG--KPIRVNKASAHNKNLD-VGANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 172 V-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+M+D + S+G F+ ++ D + AAI A+NG Y C++P+TV +A D K
Sbjct: 129 TPKIMQDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAFKKDSKGE 185
Query: 227 RPGDS 231
R G +
Sbjct: 186 RHGSA 190
>gi|254281259|ref|NP_001156869.1| ELAV-like protein 4 isoform c [Mus musculus]
Length = 356
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 49 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 108
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR+
Sbjct: 109 TLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 162
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 163 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 214
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 97/222 (43%), Gaps = 53/222 (23%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 135 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 194
Query: 112 ALHNQHTLPGGVGPIQVRYA---------------------------------------- 131
L+ Q G PI V++A
Sbjct: 195 GLNGQKP-SGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRFSPIT 253
Query: 132 -DGERERLG-------AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQS 182
DG +G + +FV +L+ + E + ++F P+G V +V ++RD +
Sbjct: 254 IDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKC 313
Query: 183 RGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224
+G GFV ++ D A AI +LNG R D+ L V F K
Sbjct: 314 KGFGFVTMTNYDEAAMAIASLNG---YRLGDRVLQVSFKTNK 352
>gi|71896483|ref|NP_001025497.1| ELAV-like protein 3 [Xenopus (Silurana) tropicalis]
gi|123913100|sp|Q28FX0.1|ELAV3_XENTR RecName: Full=ELAV-like protein 3; AltName: Full=Protein ElrC
gi|89266725|emb|CAJ83874.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C) [Xenopus (Silurana) tropicalis]
Length = 343
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 99/191 (51%), Gaps = 15/191 (7%)
Query: 35 FSGRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQG 94
+G G + D S L V +P+ +E+ + LF G + L++DK TGQ G
Sbjct: 23 LNGTNGAADD-----SKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLG 77
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQ 153
F+ Y +AD+AI L+ L I+V YA R ++ + L+V SL K
Sbjct: 78 YGFVNYVDPNDADKAINTLNG---LKLQTKTIKVSYA---RPSSASIRDANLYVSSLPKT 131
Query: 154 ATEKEVEEIFSPYGRVEDVYLMRDEL--KQSRGCGFVKYSHRDMALAAINALNGIYTMRG 211
+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG + G
Sbjct: 132 MNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-G 190
Query: 212 CDQPLTVRFAD 222
+P+TV+FA+
Sbjct: 191 ASEPITVKFAN 201
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 103/227 (45%), Gaps = 54/227 (23%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQ-QQGCCFIKYATSEEADRAI 110
A L+V S+PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI
Sbjct: 121 ANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAI 180
Query: 111 RALHNQHTLPGGVGPIQVRYADGERERLG-----------AVEYK--------------- 144
+ L+ Q L G PI V++A+ ++ G A Y
Sbjct: 181 KGLNGQKPL-GASEPITVKFANNPSQKTGQALLTHLYQTTARRYTGPLHHQTQRFRFSPI 239
Query: 145 ----------------------LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQ 181
+FV +L+ +A E + ++F P+G V +V ++RD +
Sbjct: 240 TIDSVTNLAGVSLTGPTTAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNK 299
Query: 182 SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRP 228
+G GFV ++ D A AI +LNG R D+ L V F K+ +
Sbjct: 300 CKGFGFVTMTNYDEAAMAIASLNG---YRLGDRVLQVSFKTSKQHKA 343
>gi|355558380|gb|EHH15160.1| hypothetical protein EGK_01215 [Macaca mulatta]
Length = 424
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 100/185 (54%), Gaps = 12/185 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ + KD+ TGQ QG F+++ + E+AD AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+ N L G PI+V A + L V +F+G+L+ + EK + + FS +G +
Sbjct: 73 IM-NMIKLYG--KPIRVNKASAHNKNLD-VGANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 172 V-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+MRD + S+G F+ ++ D + AAI A+NG Y C+ P+T+ +A D K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNCPITISYAFRKDSKGE 185
Query: 227 RPGDS 231
R G +
Sbjct: 186 RHGSA 190
>gi|348554579|ref|XP_003463103.1| PREDICTED: ELAV-like protein 4 isoform 2 [Cavia porcellus]
Length = 347
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 39 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR+
Sbjct: 99 TLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 152
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 153 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 204
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 97/223 (43%), Gaps = 54/223 (24%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
Query: 112 ALHNQHTLPGGVGPIQVRYA---------------------------------------- 131
L+ Q G PI V++A
Sbjct: 185 GLNGQKP-SGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFSRFSPI 243
Query: 132 --DGERERLG-------AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQ 181
DG +G + +FV +L+ + E + ++F P+G V +V ++RD +
Sbjct: 244 TIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNK 303
Query: 182 SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224
+G GFV ++ D A AI +LNG R D+ L V F K
Sbjct: 304 CKGFGFVTMTNYDEAAMAIASLNG---YRLGDRVLQVSFKTNK 343
>gi|347964852|ref|XP_309157.5| AGAP000965-PA [Anopheles gambiae str. PEST]
gi|333466508|gb|EAA04954.5| AGAP000965-PA [Anopheles gambiae str. PEST]
Length = 340
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 94/172 (54%), Gaps = 7/172 (4%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+T +E+++ LF G+V LI+DK TGQ G F+ Y E+A++AI
Sbjct: 27 TNLIVNYLPQTMTQEEVKSLFSSIGDVESCKLIRDKVTGQSLGYGFVNYHRPEDAEKAIN 86
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+ L I+V +A + + L+V L+K T++++E +F+ YG++
Sbjct: 87 TFNG---LRLQNKTIKVSFARPSSDAIKGAN--LYVSGLSKSMTQQDLENLFNAYGQIIT 141
Query: 172 VYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D + S+G GF+++ R A AI LNG T +G +P+TV+FA+
Sbjct: 142 SRILCDNITGLSKGVGFIRFDQRSEAERAIQQLNGT-TPKGASEPITVKFAN 192
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 95/221 (42%), Gaps = 56/221 (25%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCF--- 97
PS D + G A L+V + K+ ++D+ LF +G +I ++ D TG +G F
Sbjct: 105 PSSDAIKG---ANLYVSGLSKSMTQQDLENLFNAYGQIITSRILCDNITGLSKGVGFIRF 161
Query: 98 --------------------------IKYAT--SEEADRAIRALHNQHTL--------PG 121
+K+A S ++AI L T PG
Sbjct: 162 DQRSEAERAIQQLNGTTPKGASEPITVKFANNPSNNINKAIPPLAAYLTPTPNLRRFPPG 221
Query: 122 GVGPIQVRYA-------DGERERLGAVE-----YKLFVGSLNKQATEKEVEEIFSPYGRV 169
+ P+ R++ D L A + +FV +L + E + ++F P+G V
Sbjct: 222 PIHPLSGRFSRYSPLTGDLGSSVLSANAINGSGWCIFVYNLAPETEENVLWQLFGPFGAV 281
Query: 170 EDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTM 209
+ V +++D + + +G GFV ++ D A+ A+ +LNG YT+
Sbjct: 282 QSVKVIKDLQTNKCKGFGFVTMTNYDEAVVAVQSLNG-YTL 321
>gi|359067089|ref|XP_002688919.2| PREDICTED: ELAV-like protein 3 [Bos taurus]
Length = 408
Score = 92.4 bits (228), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 7/170 (4%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
L V +P+ +++ + LF G++ L++DK TGQ G F+ Y+ +AD+AI L
Sbjct: 89 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 148
Query: 114 HNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVY 173
+ L I+V YA + + L+V L K ++KE+E++FS YGR+
Sbjct: 149 NG---LKLQTKTIKVSYARPSSASI--RDANLYVSGLPKTMSQKEMEQLFSQYGRIITSR 203
Query: 174 LMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG + G +P+TV+FA+
Sbjct: 204 ILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFAN 252
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 173 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 232
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG 139
L+ Q L G PI V++A+ ++ G
Sbjct: 233 GLNGQKPL-GAAEPITVKFANNPSQKTG 259
Score = 47.4 bits (111), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L+ +A E + ++F P+G V +V ++RD + +G GFV ++ D A AI
Sbjct: 325 WCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIA 384
Query: 202 ALNGIYTMRGCDQPLTVRFADPK 224
+LNG R ++ L V F K
Sbjct: 385 SLNG---YRLGERVLQVSFKTSK 404
>gi|340709266|ref|XP_003393232.1| PREDICTED: ELAV-like protein 2-like [Bombus terrestris]
Length = 533
Score = 92.4 bits (228), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 143/322 (44%), Gaps = 41/322 (12%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
L V +P++ +++IR LF G V LI+DK TGQ G F+ Y E+A++AI L
Sbjct: 30 LIVNYLPQSMTQDEIRSLFASIGEVESCKLIRDKLTGQSLGYGFVNYHRPEDAEKAINTL 89
Query: 114 HNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVY 173
+ L I+V YA E + L+V L K T++++E +F+PYGR+
Sbjct: 90 NG---LRLQNKTIKVSYARPSSEAIKGAN--LYVSGLPKNMTQQDLENLFNPYGRIITSR 144
Query: 174 LMRDELKQ--------------SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
++ D + S+G GF+++ R A AI LNG +G +P+TV+
Sbjct: 145 ILCDNITVRQFVTGGGDYLPGLSKGVGFIRFDQRVEAERAIQELNGT-VPKGSSEPITVK 203
Query: 220 FADPKRPRPGDSRSGPTFGGPGFGPRFQPPSPRPPPNFGDPITDQIPQNAWHPMSPRNMG 279
FA+ P ++ P +P+ +G PI + + P+SP +
Sbjct: 204 FAN----NPSNNNKAI--------PPLAYLAPQATRRYGGPIHHPTGRFRYIPLSPLSST 251
Query: 280 PLSNPGIRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQAPS 339
+ I + P +GDL A+ LPG A++ + + PE++
Sbjct: 252 GKAMLAINKGLQRYSPLAGDL--------LANSMLPGNAMNGSGWCIFVYNLAPETEENV 303
Query: 340 LGQQISPLQKPLQSPQHMPPLQ 361
L Q P +QS + + LQ
Sbjct: 304 LWQLFGPF-GAVQSVKVIRDLQ 324
Score = 46.6 bits (109), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L + E + ++F P+G V+ V ++RD + + +G GFV ++ D A+ AI +L
Sbjct: 290 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 349
Query: 204 NGIYTMRGCDQPLTVRFADPK 224
NG YT+ ++ L V F K
Sbjct: 350 NG-YTL--GNRVLQVSFKTNK 367
>gi|294932797|ref|XP_002780446.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239890380|gb|EER12241.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 612
Score = 92.4 bits (228), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 85/155 (54%), Gaps = 8/155 (5%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P E D+ PLF + G ++E+A+ +D++ G+ +GC ++KY T E D I
Sbjct: 135 KLFVGCLPFDTTEHDLFPLFAQFGEIVELAIQRDRE-GRSKGCAWLKYLTRESCDDCIAR 193
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQAT---EKEVEEIFSPYGRV 169
LH Q + +QV+YA GE E+ E ++++ L + T E E+ YG +
Sbjct: 194 LHGQFYVGHVRAAMQVKYATGELEKR---ENRVYLIGLPRDETVMAEHELLTALDAYGEI 250
Query: 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALN 204
+ L R + +S G FVK++ R+ A A + A +
Sbjct: 251 REFVLFR-QGGRSVGACFVKFTAREPAAALVQACH 284
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 4/92 (4%)
Query: 41 PSPDL-VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
PSP+L +G + AKLFVG +P + D+ LF + G ++EVAL+ + + G+ +G F+
Sbjct: 398 PSPNLPQEGLTPAKLFVGCLPYSKTTLDLAQLFGQFGPILEVALLTNSE-GKSKGAAFVT 456
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYA 131
+A + +A+ A+ N++ PG I V YA
Sbjct: 457 FAYAPDAEAAMSM--NEYCFPGSSRSINVSYA 486
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 44/79 (55%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINA 202
YKLFVG L TE ++ +F+ +G + ++ + RD +S+GC ++KY R+ I
Sbjct: 134 YKLFVGCLPFDTTEHDLFPLFAQFGEIVELAIQRDREGRSKGCAWLKYLTRESCDDCIAR 193
Query: 203 LNGIYTMRGCDQPLTVRFA 221
L+G + + + V++A
Sbjct: 194 LHGQFYVGHVRAAMQVKYA 212
Score = 38.9 bits (89), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINAL 203
KLFVG L T ++ ++F +G + +V L+ + +S+G FV +++ A AA+ ++
Sbjct: 411 KLFVGCLPYSKTTLDLAQLFGQFGPILEVALLTNSEGKSKGAAFVTFAYAPDAEAAM-SM 469
Query: 204 NGIYTMRGCDQPLTVRFA 221
N Y G + + V +A
Sbjct: 470 NE-YCFPGSSRSINVSYA 486
>gi|256078401|ref|XP_002575484.1| bruno-like rna binding protein [Schistosoma mansoni]
gi|350645920|emb|CCD59385.1| bruno-like rna binding protein [Schistosoma mansoni]
Length = 479
Score = 92.4 bits (228), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 83/172 (48%), Gaps = 13/172 (7%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K EED+R LFE G + E +++D+ G +GC F+K++T +EA AI
Sbjct: 20 KLFVGMLSKQQNEEDVRLLFEPFGTIEECTILRDQN-GNSKGCAFVKFSTQQEAQSAILT 78
Query: 113 LHNQHTLPGGVGPIQVRYADGERER-----------LGAVEYKLFVGSLNKQATEKEVEE 161
LH T+PG I V++AD E+ER +G + + LN + +E
Sbjct: 79 LHGSQTMPGASSSIVVKFADSEKERHTRKIQQLIGPMGLFSPTIALSQLNGNMYSQMIEN 138
Query: 162 IFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINAL-NGIYTMRGC 212
+ G + V + +L+ + V LA I+AL NG GC
Sbjct: 139 MAQTTGYINPVAALALQLQHASQLATVNLPTNVTNLAMISALTNGSSGHLGC 190
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 3/103 (2%)
Query: 125 PIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRG 184
P+QV+ AD ER E KLFVG L+KQ E++V +F P+G +E+ ++RD+ S+G
Sbjct: 4 PLQVKTADMERR---TEERKLFVGMLSKQQNEEDVRLLFEPFGTIEECTILRDQNGNSKG 60
Query: 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
C FVK+S + A +AI L+G TM G + V+FAD ++ R
Sbjct: 61 CAFVKFSTQQEAQSAILTLHGSQTMPGASSSIVVKFADSEKER 103
>gi|344241813|gb|EGV97916.1| ELAV-like protein 4 [Cricetulus griseus]
gi|431896875|gb|ELK06139.1| ELAV-like protein 4, partial [Pteropus alecto]
Length = 350
Score = 92.4 bits (228), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 43 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 102
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR+
Sbjct: 103 TLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 156
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 157 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 208
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 97/222 (43%), Gaps = 53/222 (23%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 129 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 188
Query: 112 ALHNQHTLPGGVGPIQVRYA---------------------------------------- 131
L+ Q G PI V++A
Sbjct: 189 GLNGQKP-SGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRFSPIT 247
Query: 132 -DGERERLG-------AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQS 182
DG +G + +FV +L+ + E + ++F P+G V +V ++RD +
Sbjct: 248 IDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKC 307
Query: 183 RGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224
+G GFV ++ D A AI +LNG R D+ L V F K
Sbjct: 308 KGFGFVTMTNYDEAAMAIASLNG---YRLGDRVLQVSFKTNK 346
>gi|449489905|ref|XP_002191033.2| PREDICTED: splicing factor 3B subunit 4 [Taeniopygia guttata]
Length = 307
Score = 92.4 bits (228), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 101/185 (54%), Gaps = 12/185 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ + KD+ TGQ QG F+++ + E+AD AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+ N L G PI+V A + L V +F+G+L+ + EK + + FS +G +
Sbjct: 73 IM-NMIKLYG--KPIRVNKASAHNKNLD-VGANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 172 V-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+MRD + S+G F+ ++ D + AAI A+NG Y C++P+TV +A D K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAFKKDSKGE 185
Query: 227 RPGDS 231
R G +
Sbjct: 186 RHGSA 190
>gi|119627248|gb|EAX06843.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D), isoform CRA_c [Homo sapiens]
Length = 356
Score = 92.4 bits (228), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 49 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 108
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR+
Sbjct: 109 TLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 162
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 163 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 214
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 97/222 (43%), Gaps = 53/222 (23%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 135 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 194
Query: 112 ALHNQHTLPGGVGPIQVRYA---------------------------------------- 131
L+ Q G PI V++A
Sbjct: 195 GLNGQKP-SGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRFSPIT 253
Query: 132 -DGERERLG-------AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQS 182
DG +G + +FV +L+ + E + ++F P+G V +V ++RD +
Sbjct: 254 IDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKC 313
Query: 183 RGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224
+G GFV ++ D A AI +LNG R D+ L V F K
Sbjct: 314 KGFGFVTMTNYDEAAMAIASLNG---YRLGDRVLQVSFKTNK 352
>gi|351705667|gb|EHB08586.1| Splicing factor 3B subunit 4 [Heterocephalus glaber]
Length = 486
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 101/185 (54%), Gaps = 12/185 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ + KD+ TGQ QG F+++ + E+AD AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+ N L G PI+V A + L V +F+G+L+ + EK + + FS +G +
Sbjct: 73 IM-NMIKLYG--KPIRVNKASAHNKNLD-VGANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 172 V-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+MRD + S+G F+ ++ D + AAI A+NG Y C++P+TV +A D K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAFKKDSKGE 185
Query: 227 RPGDS 231
R G +
Sbjct: 186 RHGSA 190
>gi|2801552|gb|AAC40080.1| RNA binding protein Elavl4 [Mus musculus]
Length = 346
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 39 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR+
Sbjct: 99 TLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 152
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 153 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 204
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 97/222 (43%), Gaps = 53/222 (23%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
Query: 112 ALHNQHTLPGGVGPIQVRYA---------------------------------------- 131
L+ Q G PI V++A
Sbjct: 185 GLNGQKP-SGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRFSPIT 243
Query: 132 -DGERERLG-------AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQS 182
DG +G + +FV +L+ + E + ++F P+G V +V ++RD +
Sbjct: 244 IDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKC 303
Query: 183 RGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224
+G GFV ++ D A AI +LNG R D+ L V F K
Sbjct: 304 KGFGFVTMTNYDEAAMAIASLNG---YRLGDRVLQVSFKTNK 342
>gi|116787606|gb|ABK24573.1| unknown [Picea sitchensis]
Length = 290
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 100/178 (56%), Gaps = 9/178 (5%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG++P + + LFE G V++V +I D++TG +G F+ T EEA++ +
Sbjct: 114 KLFVGNLPFNLDNQQLGELFEGAGEVLDVNIITDRETGNSRGFGFVTMGTVEEAEKGVE- 172
Query: 113 LHNQHTLPGGVGPIQVRYADGER-ER---LGAVEYKLFVGSLNKQATEKEVEEIFSPYGR 168
L N+H+L G + + G + ER G+ K++VG+L QA + + ++FS +G+
Sbjct: 173 LFNRHSLEGRLLTVNKAAPRGTKVERPSQAGSSTNKIYVGNLPWQADDNSLLQLFSEHGK 232
Query: 169 VEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKR 225
V + ++ D E +SRG GFV YS AI AL+G M G +PL V A+ +R
Sbjct: 233 VLEARVVYDRETGRSRGFGFVTYSSESEVNDAIAALDGT-DMDG--RPLRVNIAEDRR 287
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 43/66 (65%)
Query: 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEAD 107
GSS K++VG++P A + + LF EHG V+E ++ D++TG+ +G F+ Y++ E +
Sbjct: 203 GSSTNKIYVGNLPWQADDNSLLQLFSEHGKVLEARVVYDRETGRSRGFGFVTYSSESEVN 262
Query: 108 RAIRAL 113
AI AL
Sbjct: 263 DAIAAL 268
>gi|28879001|gb|AAH48159.1| Elavl4 protein [Mus musculus]
Length = 412
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR+
Sbjct: 111 TLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 164
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 165 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 216
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L+ + E + ++F P+G V +V ++RD + +G GFV ++ D A AI
Sbjct: 302 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 361
Query: 202 ALNG 205
+LNG
Sbjct: 362 SLNG 365
>gi|296485880|tpg|DAA27995.1| TPA: ELAV-like protein 3-like [Bos taurus]
Length = 407
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 7/170 (4%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
L V +P+ +++ + LF G++ L++DK TGQ G F+ Y+ +AD+AI L
Sbjct: 88 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 147
Query: 114 HNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVY 173
+ L I+V YA + + L+V L K ++KE+E++FS YGR+
Sbjct: 148 NG---LKLQTKTIKVSYARPSSASI--RDANLYVSGLPKTMSQKEMEQLFSQYGRIITSR 202
Query: 174 LMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG + G +P+TV+FA+
Sbjct: 203 ILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFAN 251
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 172 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 231
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG 139
L+ Q L G PI V++A+ ++ G
Sbjct: 232 GLNGQKPL-GAAEPITVKFANNPSQKTG 258
Score = 47.4 bits (111), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L+ +A E + ++F P+G V +V ++RD + +G GFV ++ D A AI
Sbjct: 324 WCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIA 383
Query: 202 ALNGIYTMRGCDQPLTVRFADPK 224
+LNG R ++ L V F K
Sbjct: 384 SLNG---YRLGERVLQVSFKTSK 403
>gi|45382273|ref|NP_990161.1| ELAV-like protein 4 [Gallus gallus]
gi|5739519|gb|AAD50508.1|AF176675_1 RNA-binding protein HuD [Gallus gallus]
Length = 371
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR+
Sbjct: 111 TLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 164
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 165 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 216
>gi|47220048|emb|CAG12196.1| unnamed protein product [Tetraodon nigroviridis]
Length = 363
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 94/171 (54%), Gaps = 9/171 (5%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
L V +P+ +E+ + LF G + L++DK TGQ G F+ Y +AD+AI L
Sbjct: 38 LIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTL 97
Query: 114 HNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
+ L I+V YA R ++ + L+V L K ++K++E++FS YGR+
Sbjct: 98 NG---LKLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMSQKDMEQLFSQYGRIITS 151
Query: 173 YLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R+ A AI LNG + G +P+TV+FA+
Sbjct: 152 RILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQKPL-GAAEPITVKFAN 201
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++D+ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 122 ANLYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIK 181
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG 139
L+ Q L G PI V++A+ ++ G
Sbjct: 182 GLNGQKPL-GAAEPITVKFANNPSQKTG 208
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L+ +A E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 282 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 341
Query: 204 NGIYTMRGCDQPLTVRFADPKRPR 227
NG R D+ L V F K+ +
Sbjct: 342 NG---YRLGDRVLQVSFKTSKQHK 362
>gi|237833669|ref|XP_002366132.1| splicing factor, putative [Toxoplasma gondii ME49]
gi|211963796|gb|EEA98991.1| splicing factor, putative [Toxoplasma gondii ME49]
Length = 576
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 101/199 (50%), Gaps = 8/199 (4%)
Query: 30 GQKRGFSGRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKT 89
G R F+G G + + + A L++G++ ++ + LF + G V V++ +DK T
Sbjct: 7 GGHRSFTGGGADITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLT 66
Query: 90 GQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGS 149
G QG F+++ +AD A++ L N L G + D +GA +F+G+
Sbjct: 67 GNHQGYGFVEFRNEVDADYALK-LMNMVKLYGKALRLNKSAQDRRNFDVGA---NVFLGN 122
Query: 150 LNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYT 208
L+ EK + + FS +G + +MRD E SRG GFV + + + AA+ A+NG +
Sbjct: 123 LDPDVDEKTIYDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFI 182
Query: 209 MRGCDQPLTVRFADPKRPR 227
C++P+ V +A K R
Sbjct: 183 ---CNRPIHVSYAYKKDTR 198
>gi|291398067|ref|XP_002715414.1| PREDICTED: splicing factor 3b, subunit 4 [Oryctolagus cuniculus]
Length = 384
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 100/183 (54%), Gaps = 12/183 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ + KD+ TGQ QG F+++ + E+AD AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+ N L G PI+V A + L V +F+G+L+ + EK + + FS +G +
Sbjct: 73 IM-NMIKLYG--KPIRVNKASAHNKNLD-VGANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 172 V-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+MRD + S+G F+ ++ D + AAI A+NG Y C++P+TV +A D K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAFKKDSKGE 185
Query: 227 RPG 229
R G
Sbjct: 186 RHG 188
>gi|297664975|ref|XP_002810888.1| PREDICTED: ELAV-like protein 4 isoform 1 [Pongo abelii]
Length = 369
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 49 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 108
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR+
Sbjct: 109 TLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 162
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 163 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 214
>gi|308081546|ref|NP_001183096.1| uncharacterized protein LOC100501457 [Zea mays]
gi|238009292|gb|ACR35681.1| unknown [Zea mays]
gi|414871228|tpg|DAA49785.1| TPA: hypothetical protein ZEAMMB73_160597 [Zea mays]
Length = 359
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 99/183 (54%), Gaps = 12/183 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A +VG++ EE + LF + G V+ V + KD+ T QG F+++ + E+AD AI+
Sbjct: 25 ATTYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGR-VE 170
L N L G PI+V A +++ L V LF+G+L+ EK + + FS +G V
Sbjct: 85 IL-NMIKLYG--KPIRVNKASQDKKSLD-VGANLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
Query: 171 DVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+ +MRD E SRG GFV Y + + AI A+N + C++P+TV +A D K
Sbjct: 141 NPKIMRDPETGNSRGFGFVSYESFESSDQAIEAMNNQHL---CNRPITVSYAYKKDTKGE 197
Query: 227 RPG 229
R G
Sbjct: 198 RHG 200
>gi|338721769|ref|XP_003364429.1| PREDICTED: ELAV-like protein 4 [Equus caballus]
Length = 371
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR+
Sbjct: 111 TLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 164
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 165 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 216
>gi|213623456|gb|AAI69769.1| ElrC protein [Xenopus laevis]
Length = 341
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 99/190 (52%), Gaps = 14/190 (7%)
Query: 35 FSGRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQG 94
+G G + D S L V +P+ +E+ + LF G + L++DK TGQ G
Sbjct: 22 LNGTNGEADD-----SKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLG 76
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQ 153
F+ Y +AD+AI L+ L I+V YA R ++ + L+V SL K
Sbjct: 77 YGFVNYVDPNDADKAINTLNG---LKLQTKTIKVSYA---RPSSASIRDANLYVSSLPKT 130
Query: 154 ATEKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGC 212
+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG + G
Sbjct: 131 MNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GA 189
Query: 213 DQPLTVRFAD 222
+P+TV+FA+
Sbjct: 190 SEPITVKFAN 199
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 103/226 (45%), Gaps = 53/226 (23%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V S+PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 120 ANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 179
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG-----------AVEYK---------------- 144
L+ Q L G PI V++A+ ++ G A Y
Sbjct: 180 GLNGQKPL-GASEPITVKFANNPSQKTGQALLTHLYQTTARRYTGPLHHQTQRFRFSPIT 238
Query: 145 ---------------------LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQS 182
+FV +L+ +A E + ++F P+G V +V ++RD +
Sbjct: 239 IDSVTNLAGVSLTGPTTAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKC 298
Query: 183 RGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRP 228
+G GFV ++ D A AI +LNG R D+ L V F K+ +
Sbjct: 299 KGFGFVTMTNYDEAAMAIASLNG---YRLGDRVLQVSFKTSKQHKA 341
>gi|224058156|ref|XP_002196701.1| PREDICTED: ELAV-like protein 4 [Taeniopygia guttata]
Length = 371
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR+
Sbjct: 111 TLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 164
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 165 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 216
>gi|109123517|ref|XP_001107360.1| PREDICTED: ELAV-like protein 3-like [Macaca mulatta]
gi|296232958|ref|XP_002761808.1| PREDICTED: ELAV-like protein 3 [Callithrix jacchus]
Length = 251
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 100/188 (53%), Gaps = 14/188 (7%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G G + D S L V +P+ +++ + LF G++ L++DK TGQ G
Sbjct: 29 GTNGATDD-----SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYG 83
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQAT 155
F+ Y+ +AD+AI L+ L I+V YA R ++ + L+V L K +
Sbjct: 84 FVNYSDPNDADKAINTLNG---LKLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMS 137
Query: 156 EKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQ 214
+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG + G +
Sbjct: 138 QKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAE 196
Query: 215 PLTVRFAD 222
P+TV+FA+
Sbjct: 197 PITVKFAN 204
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 125 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG 139
L+ Q L G PI V++A+ ++ G
Sbjct: 185 GLNGQKPL-GAAEPITVKFANNPSQKTG 211
>gi|221316773|ref|NP_001138249.1| ELAV-like protein 4 isoform 5 [Homo sapiens]
gi|114556458|ref|XP_001135525.1| PREDICTED: ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 isoform 9 [Pan troglodytes]
gi|332219805|ref|XP_003259048.1| PREDICTED: ELAV-like protein 4 isoform 3 [Nomascus leucogenys]
gi|397518908|ref|XP_003829617.1| PREDICTED: ELAV-like protein 4 isoform 4 [Pan paniscus]
gi|402854507|ref|XP_003891909.1| PREDICTED: ELAV-like protein 4 isoform 3 [Papio anubis]
gi|426329577|ref|XP_004025815.1| PREDICTED: ELAV-like protein 4 isoform 3 [Gorilla gorilla gorilla]
gi|119627250|gb|EAX06845.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D), isoform CRA_e [Homo sapiens]
gi|221041752|dbj|BAH12553.1| unnamed protein product [Homo sapiens]
Length = 369
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 49 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 108
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR+
Sbjct: 109 TLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 162
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 163 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 214
>gi|254281262|ref|NP_001156871.1| ELAV-like protein 4 isoform d [Mus musculus]
gi|73977013|ref|XP_860413.1| PREDICTED: ELAV-like protein 4 isoform 17 [Canis lupus familiaris]
gi|291398928|ref|XP_002715152.1| PREDICTED: ELAV-like 4-like isoform 3 [Oryctolagus cuniculus]
gi|354468152|ref|XP_003496531.1| PREDICTED: ELAV-like protein 4 isoform 1 [Cricetulus griseus]
gi|426215484|ref|XP_004002002.1| PREDICTED: ELAV-like protein 4 isoform 2 [Ovis aries]
Length = 371
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR+
Sbjct: 111 TLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 164
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 165 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 216
>gi|345780791|ref|XP_859879.2| PREDICTED: ELAV-like protein 4 isoform 4 [Canis lupus familiaris]
Length = 364
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 44 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 103
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR+
Sbjct: 104 TLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 157
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 158 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 209
>gi|149693653|ref|XP_001492549.1| PREDICTED: ELAV-like protein 4 isoform 3 [Equus caballus]
Length = 366
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR+
Sbjct: 106 TLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 159
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 160 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 211
>gi|390465924|ref|XP_002750851.2| PREDICTED: ELAV-like protein 4 isoform 1 [Callithrix jacchus]
Length = 366
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR+
Sbjct: 106 TLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 159
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 160 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 211
>gi|212274429|ref|NP_001130902.1| uncharacterized protein LOC100192006 [Zea mays]
gi|194690404|gb|ACF79286.1| unknown [Zea mays]
gi|413934109|gb|AFW68660.1| hypothetical protein ZEAMMB73_687460 [Zea mays]
Length = 357
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 96/175 (54%), Gaps = 9/175 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A +VG++ EE + LF + G V+ V + KD+ T QG F+++ + E+AD AI+
Sbjct: 25 ATTYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGR-VE 170
L N L G PI+V A +++ L V LF+G+L+ EK + + FS +G V
Sbjct: 85 TL-NMIKLYG--KPIRVNKASQDKKSLD-VGANLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
Query: 171 DVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224
+ +MRD E SRG GFV Y + + AI A+N + C++P+TV +A K
Sbjct: 141 NPKIMRDPETGNSRGFGFVSYESFESSDQAIEAMNNQHL---CNRPITVSYAYKK 192
>gi|73977009|ref|XP_532585.2| PREDICTED: ELAV-like protein 4 isoform 1 [Canis lupus familiaris]
gi|291398932|ref|XP_002715154.1| PREDICTED: ELAV-like 4-like isoform 5 [Oryctolagus cuniculus]
gi|426215486|ref|XP_004002003.1| PREDICTED: ELAV-like protein 4 isoform 3 [Ovis aries]
Length = 366
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR+
Sbjct: 106 TLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 159
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 160 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 211
>gi|390465918|ref|XP_003733489.1| PREDICTED: ELAV-like protein 4 isoform 2 [Callithrix jacchus]
gi|403258117|ref|XP_003921625.1| PREDICTED: ELAV-like protein 4 isoform 1 [Saimiri boliviensis
boliviensis]
Length = 371
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR+
Sbjct: 111 TLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 164
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 165 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 216
>gi|114556468|ref|XP_001135779.1| PREDICTED: ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 isoform 12 [Pan troglodytes]
gi|332219801|ref|XP_003259046.1| PREDICTED: ELAV-like protein 4 isoform 1 [Nomascus leucogenys]
gi|395855041|ref|XP_003799980.1| PREDICTED: ELAV-like protein 4 isoform 3 [Otolemur garnettii]
gi|397518902|ref|XP_003829614.1| PREDICTED: ELAV-like protein 4 isoform 1 [Pan paniscus]
gi|402854503|ref|XP_003891907.1| PREDICTED: ELAV-like protein 4 isoform 1 [Papio anubis]
gi|426329573|ref|XP_004025813.1| PREDICTED: ELAV-like protein 4 isoform 1 [Gorilla gorilla gorilla]
gi|221042444|dbj|BAH12899.1| unnamed protein product [Homo sapiens]
gi|261860582|dbj|BAI46813.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like protein 4
[synthetic construct]
Length = 371
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR+
Sbjct: 111 TLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 164
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 165 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 216
>gi|221316771|ref|NP_001138248.1| ELAV-like protein 4 isoform 4 [Homo sapiens]
gi|114556460|ref|XP_001135439.1| PREDICTED: ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 isoform 8 [Pan troglodytes]
gi|332219809|ref|XP_003259050.1| PREDICTED: ELAV-like protein 4 isoform 5 [Nomascus leucogenys]
gi|395855043|ref|XP_003799981.1| PREDICTED: ELAV-like protein 4 isoform 4 [Otolemur garnettii]
gi|397518910|ref|XP_003829618.1| PREDICTED: ELAV-like protein 4 isoform 5 [Pan paniscus]
gi|402854511|ref|XP_003891911.1| PREDICTED: ELAV-like protein 4 isoform 5 [Papio anubis]
gi|426329581|ref|XP_004025817.1| PREDICTED: ELAV-like protein 4 isoform 5 [Gorilla gorilla gorilla]
gi|14280323|gb|AAK57538.1| HUD3 [Homo sapiens]
Length = 366
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR+
Sbjct: 106 TLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 159
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 160 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 211
>gi|119627249|gb|EAX06844.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D), isoform CRA_d [Homo sapiens]
Length = 365
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 45 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 104
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR+
Sbjct: 105 TLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 158
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 159 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 210
>gi|395730528|ref|XP_003775743.1| PREDICTED: ELAV-like protein 4 [Pongo abelii]
Length = 366
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR+
Sbjct: 106 TLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 159
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 160 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 211
>gi|15021899|dbj|BAB62225.1| Hu/elav class neuron-specific RNA binding protein [Branchiostoma
belcheri]
Length = 326
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 100/189 (52%), Gaps = 11/189 (5%)
Query: 39 GGPSPDLVDGSSF----AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQG 94
G SPD GSS L V +P+T +++I+ LF G V LI+DK TGQ G
Sbjct: 6 GSGSPDGRTGSSTKDSKTNLIVNYLPQTMTQDEIKSLFSSIGEVESCKLIRDKVTGQSLG 65
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQA 154
F+ Y ++A++AI L+ L I+V YA + + + L+V L K
Sbjct: 66 YGFVNYVKPQDAEKAINTLNG---LRLQAKTIKVSYARPSSQAIK--DANLYVSGLPKTM 120
Query: 155 TEKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCD 213
T++++E +F +GR+ ++ D + QSRG GFV++ R A AI LNG + +G
Sbjct: 121 TQQDLEGLFEAHGRIITSRILFDPVTGQSRGVGFVRFDQRVEAERAITELNG-HIPKGAT 179
Query: 214 QPLTVRFAD 222
P+TV+FA+
Sbjct: 180 DPITVKFAN 188
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 97/218 (44%), Gaps = 49/218 (22%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++D+ LFE HG +I ++ D TGQ +G F+++ EA+RAI
Sbjct: 109 ANLYVSGLPKTMTQQDLEGLFEAHGRIITSRILFDPVTGQSRGVGFVRFDQRVEAERAIT 168
Query: 112 ALHNQHTLPGGVGPIQVRYADG-----------------ERERLG--------------- 139
L N H G PI V++A+ R LG
Sbjct: 169 EL-NGHIPKGATDPITVKFANNPSQNHAKALQQAAYLAPARRYLGPMLHQTARFRYSPMG 227
Query: 140 ------------AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCG 186
+ +FV +L + + ++F P+G V +V ++RD + + +G G
Sbjct: 228 ADPMGVGNIPNGGTGFCIFVYNLAPDTEDSVLWQLFGPFGAVTNVKVIRDFQTNKCKGFG 287
Query: 187 FVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224
FV +H D A+ AI LNG Y + G + L V F K
Sbjct: 288 FVTMAHYDEAVVAIAQLNG-YCLGG--RVLQVSFKTNK 322
>gi|358333422|dbj|GAA51938.1| CUG-BP- and ETR3-like factor [Clonorchis sinensis]
Length = 849
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 55/84 (65%)
Query: 142 EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAIN 201
+ KLFVG L KQ TE E+ +F+PYG +E+ ++RD+ S+GC FVK++ AL+AI
Sbjct: 107 DRKLFVGMLGKQQTEDELRTLFAPYGSIEECTVLRDQNGASKGCAFVKFTSNSEALSAIE 166
Query: 202 ALNGIYTMRGCDQPLTVRFADPKR 225
L+ TM+G PL V+FAD R
Sbjct: 167 GLHNSQTMQGASSPLVVKFADTDR 190
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K E+++R LF +G++ E +++D+ G +GC F+K+ ++ EA AI
Sbjct: 109 KLFVGMLGKQQTEDELRTLFAPYGSIEECTVLRDQN-GASKGCAFVKFTSNSEALSAIEG 167
Query: 113 LHNQHTLPGGVGPIQVRYADGERE 136
LHN T+ G P+ V++AD +RE
Sbjct: 168 LHNSQTMQGASSPLVVKFADTDRE 191
>gi|297664979|ref|XP_002810890.1| PREDICTED: ELAV-like protein 4 isoform 3 [Pongo abelii]
Length = 371
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR+
Sbjct: 111 TLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 164
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 165 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 216
>gi|194380550|dbj|BAG58428.1| unnamed protein product [Homo sapiens]
Length = 403
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 67/104 (64%), Gaps = 3/104 (2%)
Query: 125 PIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSR 183
PIQ++ AD E+ AVE KLF+G ++K+ E ++ +FSP+G++E+ ++R SR
Sbjct: 4 PIQMKPADSEKSN--AVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSR 61
Query: 184 GCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
GC FV +S R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 62 GCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDK 105
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G V K E DIR +F G + E +++ G +GC F+ ++T A AI+A
Sbjct: 22 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPD-GLSRGCAFVTFSTRAMAQNAIKA 80
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
+H T+ G PI V++AD ++++
Sbjct: 81 MHQSQTMEGCSSPIVVKFADTQKDK 105
Score = 39.3 bits (90), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 318 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 377
Query: 112 ALH 114
A++
Sbjct: 378 AMN 380
>gi|440910150|gb|ELR59976.1| ELAV-like protein 3, partial [Bos grunniens mutus]
Length = 373
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 100/188 (53%), Gaps = 14/188 (7%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G G + D S L V +P+ +++ + LF G++ L++DK TGQ G
Sbjct: 28 GTNGATDD-----SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYG 82
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQAT 155
F+ Y+ +AD+AI L+ L I+V YA R ++ + L+V L K +
Sbjct: 83 FVNYSDPNDADKAINTLNG---LKLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMS 136
Query: 156 EKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQ 214
+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG + G +
Sbjct: 137 QKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAE 195
Query: 215 PLTVRFAD 222
P+TV+FA+
Sbjct: 196 PITVKFAN 203
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 124 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 183
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG 139
L+ Q L G PI V++A+ ++ G
Sbjct: 184 GLNGQKPL-GAAEPITVKFANNPSQKTG 210
Score = 47.0 bits (110), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L+ +A E + ++F P+G V +V ++RD + +G GFV ++ D A AI
Sbjct: 290 WCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIA 349
Query: 202 ALNGIYTMRGCDQPLTVRFADPKRPR 227
+LNG R ++ L V F K+ +
Sbjct: 350 SLNG---YRLGERVLQVSFKTSKQHK 372
>gi|388579997|gb|EIM20315.1| RNA-binding domain-containing protein [Wallemia sebi CBS 633.66]
Length = 260
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 105/188 (55%), Gaps = 11/188 (5%)
Query: 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEE 105
VD + A +++G++P+ + I L + G V V L KD+ + QG F ++ E+
Sbjct: 9 VDRNQEATIYIGNIPEAVSDAIIWELMLQAGPVASVHLPKDRVSMSHQGFGFCEFVNDED 68
Query: 106 ADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSP 165
A+ A + + NQ L G PI+V A +R+++ V LF+G+L+ E+ + + FS
Sbjct: 69 AEYACKIM-NQIKLYG--KPIRVNKASTDRKQID-VGANLFIGNLDPGVDERLLFDTFST 124
Query: 166 YGRVEDVY-LMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA--- 221
+G + DV + RD+ S+G GF++Y+ D + AI+A+NG Y M ++PLTV +A
Sbjct: 125 FGLMMDVAKIARDDTGYSKGYGFIQYNDFDSSDQAISAMNGQYLM---NKPLTVDYAFKK 181
Query: 222 DPKRPRPG 229
D K R G
Sbjct: 182 DGKGERHG 189
>gi|221316767|ref|NP_001138246.1| ELAV-like protein 4 isoform 2 [Homo sapiens]
gi|384475927|ref|NP_001245109.1| ELAV-like protein 4 [Macaca mulatta]
gi|114556464|ref|XP_001135692.1| PREDICTED: ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 isoform 11 [Pan troglodytes]
gi|332219803|ref|XP_003259047.1| PREDICTED: ELAV-like protein 4 isoform 2 [Nomascus leucogenys]
gi|395855037|ref|XP_003799978.1| PREDICTED: ELAV-like protein 4 isoform 1 [Otolemur garnettii]
gi|397518904|ref|XP_003829615.1| PREDICTED: ELAV-like protein 4 isoform 2 [Pan paniscus]
gi|402854505|ref|XP_003891908.1| PREDICTED: ELAV-like protein 4 isoform 2 [Papio anubis]
gi|426329575|ref|XP_004025814.1| PREDICTED: ELAV-like protein 4 isoform 2 [Gorilla gorilla gorilla]
gi|14280327|gb|AAK57540.1| HUD1 [Homo sapiens]
gi|380810346|gb|AFE77048.1| ELAV-like protein 4 isoform 2 [Macaca mulatta]
Length = 366
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR+
Sbjct: 106 TLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 159
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 160 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 211
>gi|125991914|ref|NP_001075075.1| ELAV-like protein 4 [Bos taurus]
gi|73976985|ref|XP_859918.1| PREDICTED: ELAV-like protein 4 isoform 5 [Canis lupus familiaris]
gi|291398926|ref|XP_002715151.1| PREDICTED: ELAV-like 4-like isoform 2 [Oryctolagus cuniculus]
gi|301772324|ref|XP_002921582.1| PREDICTED: ELAV-like protein 4-like [Ailuropoda melanoleuca]
gi|426215482|ref|XP_004002001.1| PREDICTED: ELAV-like protein 4 isoform 1 [Ovis aries]
gi|124829171|gb|AAI33284.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D) [Bos taurus]
gi|296489084|tpg|DAA31197.1| TPA: ELAV-like 4 [Bos taurus]
Length = 366
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR+
Sbjct: 106 TLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 159
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 160 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 211
>gi|149693651|ref|XP_001492503.1| PREDICTED: ELAV-like protein 4 isoform 1 [Equus caballus]
Length = 366
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR+
Sbjct: 106 TLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 159
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 160 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 211
>gi|221508124|gb|EEE33711.1| splicing factor, putative [Toxoplasma gondii VEG]
Length = 576
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 101/199 (50%), Gaps = 8/199 (4%)
Query: 30 GQKRGFSGRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKT 89
G R F+G G + + + A L++G++ ++ + LF + G V V++ +DK T
Sbjct: 7 GGHRSFTGGGADITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLT 66
Query: 90 GQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGS 149
G QG F+++ +AD A++ L N L G + D +GA +F+G+
Sbjct: 67 GNHQGYGFVEFRNEVDADYALK-LMNMVKLYGKALRLNKSAQDRRNFDVGA---NVFLGN 122
Query: 150 LNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYT 208
L+ EK + + FS +G + +MRD E SRG GFV + + + AA+ A+NG +
Sbjct: 123 LDPDVDEKTIYDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFI 182
Query: 209 MRGCDQPLTVRFADPKRPR 227
C++P+ V +A K R
Sbjct: 183 ---CNRPIHVSYAYKKDTR 198
>gi|297664981|ref|XP_002810891.1| PREDICTED: ELAV-like protein 4 isoform 4 [Pongo abelii]
Length = 366
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR+
Sbjct: 106 TLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 159
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 160 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 211
>gi|390465920|ref|XP_003733490.1| PREDICTED: ELAV-like protein 4 isoform 3 [Callithrix jacchus]
gi|403258119|ref|XP_003921626.1| PREDICTED: ELAV-like protein 4 isoform 2 [Saimiri boliviensis
boliviensis]
Length = 366
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR+
Sbjct: 106 TLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 159
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 160 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 211
>gi|380027075|ref|XP_003697261.1| PREDICTED: ELAV-like protein 2-like [Apis florea]
Length = 362
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 92/183 (50%), Gaps = 20/183 (10%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
L V +P++ +++IR LF G V LI+DK TGQ G F+ Y E+A++AI L
Sbjct: 30 LIVNYLPQSMTQDEIRSLFSSIGEVESCKLIRDKLTGQSLGYGFVNYHRPEDAEKAINTL 89
Query: 114 HNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVY 173
+ I+V YA E + L+V L K T++++E +FSPYGR+
Sbjct: 90 NGLRLQN---KTIKVSYARPSSEAIKGAN--LYVSGLPKNMTQQDLENLFSPYGRIITSR 144
Query: 174 LMRDELKQ--------------SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
++ D + S+G GF+++ R A AI LNG +G +P+TV+
Sbjct: 145 ILCDNITVRQFVTGGGDYLPGLSKGVGFIRFDQRVEAERAIQELNGTIP-KGSSEPITVK 203
Query: 220 FAD 222
FA+
Sbjct: 204 FAN 206
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L + E + ++F P+G V+ V ++RD + + +G GFV ++ D A+ AI
Sbjct: 279 WCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQ 338
Query: 202 ALNGIYTMRGCDQPLTVRFADPK 224
+LNG YT+ ++ L V F K
Sbjct: 339 SLNG-YTL--GNRVLQVSFKTNK 358
>gi|221486340|gb|EEE24601.1| splicing factor, putative [Toxoplasma gondii GT1]
Length = 576
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 101/199 (50%), Gaps = 8/199 (4%)
Query: 30 GQKRGFSGRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKT 89
G R F+G G + + + A L++G++ ++ + LF + G V V++ +DK T
Sbjct: 7 GGHRSFTGGGADITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLT 66
Query: 90 GQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGS 149
G QG F+++ +AD A++ L N L G + D +GA +F+G+
Sbjct: 67 GNHQGYGFVEFRNEVDADYALK-LMNMVKLYGKALRLNKSAQDRRNFDVGA---NVFLGN 122
Query: 150 LNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYT 208
L+ EK + + FS +G + +MRD E SRG GFV + + + AA+ A+NG +
Sbjct: 123 LDPDVDEKTIYDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFI 182
Query: 209 MRGCDQPLTVRFADPKRPR 227
C++P+ V +A K R
Sbjct: 183 ---CNRPIHVSYAYKKDTR 198
>gi|281337375|gb|EFB12959.1| hypothetical protein PANDA_010283 [Ailuropoda melanoleuca]
Length = 369
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 100/188 (53%), Gaps = 14/188 (7%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G G + D S L V +P+ +++ + LF G++ L++DK TGQ G
Sbjct: 26 GTNGATDD-----SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYG 80
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQAT 155
F+ Y+ +AD+AI L+ L I+V YA R ++ + L+V L K +
Sbjct: 81 FVNYSDPNDADKAINTLNG---LKLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMS 134
Query: 156 EKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQ 214
+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG + G +
Sbjct: 135 QKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAE 193
Query: 215 PLTVRFAD 222
P+TV+FA+
Sbjct: 194 PITVKFAN 201
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 122 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 181
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG 139
L+ Q L G PI V++A+ ++ G
Sbjct: 182 GLNGQKPL-GAAEPITVKFANNPSQKTG 208
Score = 47.0 bits (110), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L+ +A E + ++F P+G V +V ++RD + +G GFV ++ D A AI
Sbjct: 286 WCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIA 345
Query: 202 ALNGIYTMRGCDQPLTVRFADPK 224
+LNG R ++ L V F K
Sbjct: 346 SLNG---YRLGERVLQVSFKTSK 365
>gi|71051886|gb|AAH99348.1| ElrD protein, partial [Xenopus laevis]
Length = 360
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 40 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 99
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR+
Sbjct: 100 TLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 153
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 154 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGAAEPITVKFAN 205
>gi|347966748|ref|XP_321180.5| AGAP001883-PA [Anopheles gambiae str. PEST]
gi|333469916|gb|EAA01735.5| AGAP001883-PA [Anopheles gambiae str. PEST]
Length = 396
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 96/184 (52%), Gaps = 14/184 (7%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKT-------GQQQGCCFIK 99
D +S L V +P+T EE+IR LF G V V L++DK GQ G F+
Sbjct: 69 DNNSRTNLIVNYLPQTMTEEEIRSLFSSVGEVESVKLVRDKNVIYPGQPKGQSLGYGFVN 128
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y ++A++A+ L N L V ++V +A E G L++ L K T++E+
Sbjct: 129 YHRPQDAEQAVNVL-NGLRLQNKV--LKVSFARPSSE--GIKGANLYISGLPKTITQEEL 183
Query: 160 EEIFSPYGR-VEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218
E IF PYG + L++D + +G GF+++ R A AI ALNG T +G P+TV
Sbjct: 184 ETIFRPYGEIITSRVLIQDGNDKPKGVGFIRFDQRKEAERAIQALNGT-TPKGLTDPITV 242
Query: 219 RFAD 222
+F++
Sbjct: 243 KFSN 246
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 99/222 (44%), Gaps = 61/222 (27%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+G A L++ +PKT +E++ +F +G +I ++ + +G FI++ +EA
Sbjct: 162 EGIKGANLYISGLPKTITQEELETIFRPYGEIITSRVLIQDGNDKPKGVGFIRFDQRKEA 221
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYAD--GER-------------------ERLGAVE--- 142
+RAI+AL N T G PI V++++ G+ RLGA+
Sbjct: 222 ERAIQAL-NGTTPKGLTDPITVKFSNTPGQNAAAKVVQPALPAFLNPQLTRRLGAIHHPI 280
Query: 143 ----------------------------------YKLFVGSLNKQATEKEVEEIFSPYGR 168
+ +F+ +L + E + ++F P+G
Sbjct: 281 NKGLARFSPMGGEVLDMMLPAAPANGLNVAPSGGWSIFIYNLAPETEENTLWQLFGPFGA 340
Query: 169 VEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTM 209
V++V +++D Q +G GFV ++ + A+ AI +LNG YT+
Sbjct: 341 VQNVKVIKDAATNQCKGYGFVTMTNYEEAMLAIRSLNG-YTL 381
>gi|326925350|ref|XP_003208879.1| PREDICTED: ELAV-like protein 4-like [Meleagris gallopavo]
Length = 379
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 59 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 118
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR+
Sbjct: 119 TLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 172
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 173 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 224
>gi|358337762|dbj|GAA56093.1| splicing factor 3B subunit 4 [Clonorchis sinensis]
Length = 363
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 101/185 (54%), Gaps = 12/185 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ V + KD+ T Q QG F+++ T E+AD A+R
Sbjct: 13 ATIYVGGLDEKTTESILWELFLQAGPVVNVHMPKDRITMQHQGYGFVEFMTEEDADYAMR 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+ N L G PI+V A ++ L + +F+G+L+ + EK + + FS +G +
Sbjct: 73 -IMNMIKLFG--KPIRVNKASANQKNLD-IGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 128
Query: 172 V-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+MRD E S+G F+ ++ + + AAI A+NG Y C++ +T+ +A D K
Sbjct: 129 TPKIMRDPETGNSKGYAFINFASFEASDAAIEAMNGQYL---CNRAITISYAFKKDSKGE 185
Query: 227 RPGDS 231
R G +
Sbjct: 186 RHGSA 190
>gi|348509181|ref|XP_003442130.1| PREDICTED: ELAV-like protein 3-like isoform 1 [Oreochromis
niloticus]
gi|410902663|ref|XP_003964813.1| PREDICTED: ELAV-like protein 3-like isoform 1 [Takifugu rubripes]
gi|432868072|ref|XP_004071397.1| PREDICTED: ELAV-like protein 3-like isoform 1 [Oryzias latipes]
Length = 345
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 94/171 (54%), Gaps = 9/171 (5%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
L V +P+ +E+ + LF G + L++DK TGQ G F+ Y +AD+AI L
Sbjct: 40 LIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTL 99
Query: 114 HNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
+ L I+V YA R ++ + L+V L K ++K++E++FS YGR+
Sbjct: 100 NG---LKLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMSQKDMEQLFSQYGRIITS 153
Query: 173 YLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R+ A AI LNG + G +P+TV+FA+
Sbjct: 154 RILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQKPL-GAAEPITVKFAN 203
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 102/225 (45%), Gaps = 53/225 (23%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++D+ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 124 ANLYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIK 183
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG-----------AVEYK---------------- 144
L+ Q L G PI V++A+ ++ G A Y
Sbjct: 184 GLNGQKPL-GAAEPITVKFANNPSQKTGQALLTQLYQTAARRYTGPLHHQTQRFRFSPIT 242
Query: 145 ---------------------LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQS 182
+FV +L+ +A E + ++F P+G V +V ++RD +
Sbjct: 243 IDSMTSLAGVNLTGPTGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKC 302
Query: 183 RGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+G GFV ++ D A AI +LNG R D+ L V F K+ +
Sbjct: 303 KGFGFVTMTNYDEAAMAIASLNG---YRLGDRVLQVSFKTSKQHK 344
>gi|297275217|ref|XP_001082711.2| PREDICTED: CUGBP Elav-like family member 4-like [Macaca mulatta]
Length = 173
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 64/110 (58%), Gaps = 1/110 (0%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 27 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGE 134
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E
Sbjct: 87 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE 136
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINA 202
KLF+G + + EK+++ +F +G++ ++ +++D +GC F+ Y R+ AL A +A
Sbjct: 55 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 114
Query: 203 LNGIYTMRGCDQPLTVRFAD 222
L+ T+ G ++P+ V+ AD
Sbjct: 115 LHEQKTLPGMNRPIQVKPAD 134
>gi|296222553|ref|XP_002757248.1| PREDICTED: CUGBP Elav-like family member 4-like [Callithrix
jacchus]
Length = 151
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 64/110 (58%), Gaps = 1/110 (0%)
Query: 26 PQLSGQKRGFSGR-GGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALI 84
P +G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++
Sbjct: 27 PGSAGHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL 86
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGE 134
KD+ TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E
Sbjct: 87 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE 136
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINA 202
KLF+G + + EK+++ +F +G++ ++ +++D +GC F+ Y R+ AL A +A
Sbjct: 55 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 114
Query: 203 LNGIYTMRGCDQPLTVRFAD 222
L+ T+ G ++P+ V+ AD
Sbjct: 115 LHEQKTLPGMNRPIQVKPAD 134
>gi|18463972|gb|AAL73053.1| HUC [Sphoeroides nephelus]
Length = 356
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 94/171 (54%), Gaps = 9/171 (5%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
L V +P+ +E+ + LF G + L++DK TGQ G F+ Y +AD+AI L
Sbjct: 38 LIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTL 97
Query: 114 HNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
+ L I+V YA R ++ + L+V L K ++K++E++FS YGR+
Sbjct: 98 NG---LKLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMSQKDMEQLFSQYGRIITS 151
Query: 173 YLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R+ A AI LNG + G +P+TV+FA+
Sbjct: 152 RILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQKPL-GAAEPITVKFAN 201
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++D+ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 122 ANLYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIK 181
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG 139
L+ Q L G PI V++A+ ++ G
Sbjct: 182 GLNGQKPL-GAAEPITVKFANNPSQKTG 208
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L+ +A E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 275 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 334
Query: 204 NGIYTMRGCDQPLTVRFADPKRPR 227
NG R D+ L V F K+ +
Sbjct: 335 NG---YRLGDRVLQVSFKTSKQHK 355
>gi|608543|gb|AAA96945.1| ribonucleoprotein [Xenopus laevis]
Length = 366
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR+
Sbjct: 106 TLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 159
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 160 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGAAEPITVKFAN 211
>gi|432882405|ref|XP_004074014.1| PREDICTED: splicing factor 3B subunit 4-like [Oryzias latipes]
Length = 344
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 100/183 (54%), Gaps = 12/183 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ + KD+ TGQ QG F+++ + E+AD AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+ N L G PI+V A + L V +F+G+L+ + EK + + FS +G +
Sbjct: 73 IM-NMIKLYG--KPIRVNKASAHNKNLD-VGANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 172 V-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+MRD + S+G F+ ++ D + AAI A+NG Y C++P+TV +A D K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAFKKDSKGE 185
Query: 227 RPG 229
R G
Sbjct: 186 RHG 188
>gi|395530250|ref|XP_003767210.1| PREDICTED: ELAV-like protein 4 [Sarcophilus harrisii]
Length = 707
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 92/174 (52%), Gaps = 7/174 (4%)
Query: 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRA 109
S L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++A
Sbjct: 385 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 444
Query: 110 IRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRV 169
I L+ L I+V YA + + L+V L K T+KE+E++FS YGR+
Sbjct: 445 INTLNG---LRLQTKTIKVSYARPSSASI--RDANLYVSGLPKTMTQKELEQLFSQYGRI 499
Query: 170 EDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 500 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 552
Score = 47.4 bits (111), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L+ + E + ++F P+G V +V ++RD + +G GFV ++ D A AI
Sbjct: 624 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 683
Query: 202 ALNGIYTMRGCDQPLTVRFADPK 224
+LNG R D+ L V F K
Sbjct: 684 SLNG---YRLGDRVLQVSFKTNK 703
>gi|432868074|ref|XP_004071398.1| PREDICTED: ELAV-like protein 3-like isoform 2 [Oryzias latipes]
Length = 359
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 94/171 (54%), Gaps = 9/171 (5%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
L V +P+ +E+ + LF G + L++DK TGQ G F+ Y +AD+AI L
Sbjct: 40 LIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTL 99
Query: 114 HNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
+ L I+V YA R ++ + L+V L K ++K++E++FS YGR+
Sbjct: 100 NG---LKLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMSQKDMEQLFSQYGRIITS 153
Query: 173 YLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R+ A AI LNG + G +P+TV+FA+
Sbjct: 154 RILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQKPL-GAAEPITVKFAN 203
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++D+ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 124 ANLYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIK 183
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG 139
L+ Q L G PI V++A+ ++ G
Sbjct: 184 GLNGQKPL-GAAEPITVKFANNPSQKTG 210
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L+ +A E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 204 NGIYTMRGCDQPLTVRFADPKRPR 227
NG R D+ L V F K+ +
Sbjct: 338 NG---YRLGDRVLQVSFKTSKQHK 358
>gi|348509183|ref|XP_003442131.1| PREDICTED: ELAV-like protein 3-like isoform 2 [Oreochromis
niloticus]
Length = 359
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 94/172 (54%), Gaps = 10/172 (5%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
L V +P+ +E+ + LF G + L++DK TGQ G F+ Y +AD+AI L
Sbjct: 40 LIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTL 99
Query: 114 HNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
+ L I+V YA R ++ + L+V L K ++K++E++FS YGR+
Sbjct: 100 NG---LKLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMSQKDMEQLFSQYGRIITS 153
Query: 173 YLMRDELKQ--SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R+ A AI LNG + G +P+TV+FA+
Sbjct: 154 RILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQKPL-GAAEPITVKFAN 204
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L+ +A E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 204 NGIYTMRGCDQPLTVRFADPKRPR 227
NG R D+ L V F K+ +
Sbjct: 338 NG---YRLGDRVLQVSFKTSKQHK 358
>gi|149020435|gb|EDL78240.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C), isoform CRA_a [Rattus norvegicus]
Length = 251
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 99/188 (52%), Gaps = 14/188 (7%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G G + D S L V +P+ +++ + LF G++ L++DK TGQ G
Sbjct: 29 GTNGATDD-----SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYG 83
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQAT 155
F+ Y+ +AD+AI L+ L I+V YA R ++ + L+V L K +
Sbjct: 84 FVNYSDPNDADKAINTLNG---LKLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMS 137
Query: 156 EKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQ 214
+KE+E++FS YGR+ ++ D+ SRG GF+++ R A AI LNG + G +
Sbjct: 138 QKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAE 196
Query: 215 PLTVRFAD 222
P+TV+FA+
Sbjct: 197 PITVKFAN 204
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 125 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIK 184
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG 139
L+ Q L G PI V++A+ ++ G
Sbjct: 185 GLNGQKPL-GAAEPITVKFANNPSQKTG 211
>gi|2204093|emb|CAB05390.1| FCA beta [Arabidopsis thaliana]
gi|2204097|emb|CAB05393.1| FCA alpha and FCA beta [Arabidopsis thaliana]
gi|2204099|emb|CAB05394.1| FCA alpha 1 [Arabidopsis thaliana]
gi|5302787|emb|CAB46036.1| FCA alpha and beta protein [Arabidopsis thaliana]
gi|7268379|emb|CAB78672.1| FCA alpha and beta protein [Arabidopsis thaliana]
Length = 260
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 61/79 (77%), Gaps = 4/79 (5%)
Query: 20 PQSLPVPQ-LSGQKRGF--SGRGGPS-PDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEH 75
P + PV Q LSGQKRG+ S G + D+ D SS KLFVGSVP+TA EE+IRP FE+H
Sbjct: 84 PTTPPVQQPLSGQKRGYPISDHGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQH 143
Query: 76 GNVIEVALIKDKKTGQQQG 94
GNV+EVALIKDK+TGQQQG
Sbjct: 144 GNVLEVALIKDKRTGQQQG 162
>gi|340383573|ref|XP_003390291.1| PREDICTED: protein alan shepard-like, partial [Amphimedon
queenslandica]
Length = 443
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 104/207 (50%), Gaps = 25/207 (12%)
Query: 22 SLPVPQLSGQKRGFSGRGGPSP------DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEH 75
+L VP L F+G GP P D S + L++ + +ED+R + E++
Sbjct: 139 ALAVPGL------FNGGVGPLPIHELPEDDEPPKSTSNLYIRGLSDNCTDEDLRKMCEKY 192
Query: 76 GNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGER 135
G + I DKKTGQ +G F+ + SEEAD A++AL + + V++A +
Sbjct: 193 GTINSTKSILDKKTGQCKGYGFVDF--SEEAD-ALKALESLQAIG-----TDVQFARRQE 244
Query: 136 ERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDM 195
E L++ +L K +EK++E++ SPYGR+ ++R+ SRG GFV+ R+
Sbjct: 245 ED----PTNLYLSNLPKYYSEKDLEKLLSPYGRIISTRVLREPSGYSRGVGFVRLDSREN 300
Query: 196 ALAAINALNGIYTMRGCDQPLTVRFAD 222
A ALN G D L ++FAD
Sbjct: 301 CEKAREALNNT-IFPGTDLELNIKFAD 326
>gi|410902665|ref|XP_003964814.1| PREDICTED: ELAV-like protein 3-like isoform 2 [Takifugu rubripes]
Length = 358
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 94/171 (54%), Gaps = 9/171 (5%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
L V +P+ +E+ + LF G + L++DK TGQ G F+ Y +AD+AI L
Sbjct: 40 LIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTL 99
Query: 114 HNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
+ L I+V YA R ++ + L+V L K ++K++E++FS YGR+
Sbjct: 100 NG---LKLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMSQKDMEQLFSQYGRIITS 153
Query: 173 YLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R+ A AI LNG + G +P+TV+FA+
Sbjct: 154 RILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQKPL-GAAEPITVKFAN 203
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++D+ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 124 ANLYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIK 183
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG 139
L+ Q L G PI V++A+ ++ G
Sbjct: 184 GLNGQKPL-GAAEPITVKFANNPSQKTG 210
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L+ +A E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 277 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 336
Query: 204 NGIYTMRGCDQPLTVRFADPKRPR 227
NG R D+ L V F K+ +
Sbjct: 337 NG---YRLGDRVLQVSFKTSKQHK 357
>gi|296484904|tpg|DAA27019.1| TPA: ELAV-like 2-like [Bos taurus]
Length = 620
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 93/174 (53%), Gaps = 7/174 (4%)
Query: 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRA 109
S L V +P+ +E+++ LF G + L++DK TGQ G F+ Y ++A++A
Sbjct: 311 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 370
Query: 110 IRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRV 169
I L+ L I+V YA + + L+V L K T+KE+E++FS YGR+
Sbjct: 371 INTLNG---LRLQTKTIKVSYARPSSASI--RDANLYVSGLPKTMTQKELEQLFSQYGRI 425
Query: 170 EDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 426 ITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG-QKPPGATEPITVKFAN 478
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 90/203 (44%), Gaps = 50/203 (24%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 399 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 458
Query: 112 ALHNQHTLPGGVGPIQVRYAD-----------------------------GERERLG--- 139
L+ Q PG PI V++A+ +R R
Sbjct: 459 GLNGQKP-PGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRFSPMT 517
Query: 140 ----------------AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQS 182
+ +FV +L A E + ++F P+G V +V ++RD +
Sbjct: 518 IDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKC 577
Query: 183 RGCGFVKYSHRDMALAAINALNG 205
+G GFV ++ D A AI +LNG
Sbjct: 578 KGFGFVTMTNYDEAAMAIASLNG 600
>gi|401409932|ref|XP_003884414.1| putative splicing factor [Neospora caninum Liverpool]
gi|325118832|emb|CBZ54384.1| putative splicing factor [Neospora caninum Liverpool]
Length = 550
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 101/199 (50%), Gaps = 8/199 (4%)
Query: 30 GQKRGFSGRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKT 89
G R F+G G + + + A L++G++ ++ + LF + G V V++ +DK T
Sbjct: 7 GGHRSFAGGGADITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLT 66
Query: 90 GQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGS 149
G QG F+++ +AD A++ L N L G + D +GA +F+G+
Sbjct: 67 GNHQGYGFVEFTNEVDADYALK-LMNMVKLYGKSLRLNKSAQDRRNFDVGA---NIFLGN 122
Query: 150 LNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYT 208
L+ EK + + FS +G + +MRD E SRG GFV + + + AA+ A+NG +
Sbjct: 123 LDPDVDEKTIYDTFSTFGNILTAKIMRDPETGISRGFGFVSFDTFEASDAALAAMNGQFI 182
Query: 209 MRGCDQPLTVRFADPKRPR 227
C++P+ V +A K R
Sbjct: 183 ---CNRPIHVSYAYKKDTR 198
>gi|340725300|ref|XP_003401010.1| PREDICTED: CUGBP Elav-like family member 4-like isoform 3 [Bombus
terrestris]
Length = 384
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 63/103 (61%), Gaps = 4/103 (3%)
Query: 125 PIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRG 184
PIQV+ AD E + KLFVG L+KQ TE +V ++F+ +G +E+ ++R SRG
Sbjct: 4 PIQVKPADSENRG----DRKLFVGMLSKQQTEDDVRQLFTAFGTIEECTILRGPDGSSRG 59
Query: 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
C FVK S ALAAIN L+G TM G L V+FAD ++ R
Sbjct: 60 CAFVKLSSHQEALAAINTLHGSQTMPGASSSLVVKFADTEKER 102
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K E+D+R LF G + E +++ G +GC F+K ++ +EA AI
Sbjct: 19 KLFVGMLSKQQTEDDVRQLFTAFGTIEECTILRGPD-GSSRGCAFVKLSSHQEALAAINT 77
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH T+PG + V++AD E+ER
Sbjct: 78 LHGSQTMPGASSSLVVKFADTEKER 102
>gi|194207476|ref|XP_001492529.2| PREDICTED: ELAV-like protein 4 isoform 2 [Equus caballus]
Length = 383
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 63 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 122
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR+
Sbjct: 123 TLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 176
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 177 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 228
>gi|40807107|gb|AAH65343.1| Elavl3 protein [Danio rerio]
Length = 359
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 94/172 (54%), Gaps = 10/172 (5%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
L V +P+ +E+ + LF G + L++DK TGQ G F+ Y +AD+AI L
Sbjct: 40 LIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTL 99
Query: 114 HNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
+ L I+V YA R ++ + L+V L K ++K++E++FS YGR+
Sbjct: 100 NG---LKLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMSQKDMEQLFSQYGRIITS 153
Query: 173 YLMRDELKQ--SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R+ A AI LNG + G +P+TV+FA+
Sbjct: 154 RILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQKPL-GAAEPITVKFAN 204
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L+ +A E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 204 NGIYTMRGCDQPLTVRFADPKRPR 227
NG R D+ L V F K+ +
Sbjct: 338 NG---YRLGDRVLQVSFKTSKQHK 358
>gi|340725298|ref|XP_003401009.1| PREDICTED: CUGBP Elav-like family member 4-like isoform 2 [Bombus
terrestris]
Length = 374
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 63/103 (61%), Gaps = 3/103 (2%)
Query: 125 PIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRG 184
PIQV+ AD E + KLFVG L+KQ TE +V ++F+ +G +E+ ++R SRG
Sbjct: 4 PIQVKPADSENR---GEDRKLFVGMLSKQQTEDDVRQLFTAFGTIEECTILRGPDGSSRG 60
Query: 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
C FVK S ALAAIN L+G TM G L V+FAD ++ R
Sbjct: 61 CAFVKLSSHQEALAAINTLHGSQTMPGASSSLVVKFADTEKER 103
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K E+D+R LF G + E +++ G +GC F+K ++ +EA AI
Sbjct: 20 KLFVGMLSKQQTEDDVRQLFTAFGTIEECTILRGPD-GSSRGCAFVKLSSHQEALAAINT 78
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH T+PG + V++AD E+ER
Sbjct: 79 LHGSQTMPGASSSLVVKFADTEKER 103
>gi|395855039|ref|XP_003799979.1| PREDICTED: ELAV-like protein 4 isoform 2 [Otolemur garnettii]
Length = 383
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 63 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 122
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR+
Sbjct: 123 TLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 176
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 177 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 228
>gi|221316769|ref|NP_001138247.1| ELAV-like protein 4 isoform 3 [Homo sapiens]
gi|14280325|gb|AAK57539.1| HUD4 [Homo sapiens]
Length = 383
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 63 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 122
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR+
Sbjct: 123 TLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 176
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 177 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 228
>gi|348554577|ref|XP_003463102.1| PREDICTED: ELAV-like protein 4 isoform 1 [Cavia porcellus]
gi|354468154|ref|XP_003496532.1| PREDICTED: ELAV-like protein 4 isoform 2 [Cricetulus griseus]
Length = 383
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 63 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 122
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR+
Sbjct: 123 TLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 176
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 177 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 228
>gi|429327508|gb|AFZ79268.1| spliceosome associated protein, putative [Babesia equi]
Length = 311
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 100/189 (52%), Gaps = 11/189 (5%)
Query: 45 LVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSE 104
L D + A L+VG+V EE + LF + G V + + +DK TGQ QG F+++ T +
Sbjct: 11 LYDRNQEATLYVGNVDMQVDEELLWELFIQAGVVKNIHIPRDKVTGQHQGYGFVEFETED 70
Query: 105 EADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFS 164
+AD A+R L+ P+++ A ++E + V LF+G+++++ EK + + FS
Sbjct: 71 DADYAVRILNFVKLYN---KPLRLNKASRDKENI-EVGANLFIGNVDEEVDEKLLHDTFS 126
Query: 165 PYGRVEDVYLMRDELKQSRGC-GFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA-- 221
+G V ++RD R FV Y + + AA+ A+NG + C++P+ V +A
Sbjct: 127 AFGNVLLTKIVRDIDSAGRNAYAFVSYDSFEASDAALAAMNGQFL---CNKPIHVSYAYK 183
Query: 222 -DPKRPRPG 229
D K R G
Sbjct: 184 KDTKGERHG 192
>gi|358414907|ref|XP_003582947.1| PREDICTED: CUGBP Elav-like family member 2-like [Bos taurus]
Length = 398
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 65/103 (63%), Gaps = 4/103 (3%)
Query: 125 PIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRG 184
PIQ++ AD E+ + KLF+G ++K+ E ++ +FSP+G++E+ ++R SRG
Sbjct: 4 PIQMKPADSEKSN----DRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRG 59
Query: 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
C FV +S R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 60 CAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDK 102
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G V K E DIR +F G + E +++ G +GC F+ ++T A AI+A
Sbjct: 19 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPD-GLSRGCAFVTFSTRAMAQNAIKA 77
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
+H T+ G PI V++AD ++++
Sbjct: 78 MHQSQTMEGCSSPIVVKFADTQKDK 102
Score = 39.3 bits (90), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LF+ +P+ ++DI +F GNVI + DK+T + F+ Y A AI+
Sbjct: 313 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 372
Query: 112 ALH 114
A++
Sbjct: 373 AMN 375
>gi|52694662|ref|NP_705947.3| splicing factor 3B subunit 4 [Danio rerio]
gi|34193906|gb|AAH56532.1| Splicing factor 3b, subunit 4 [Danio rerio]
gi|45768679|gb|AAH67655.1| Splicing factor 3b, subunit 4 [Danio rerio]
gi|94733748|emb|CAK11461.1| splicing factor 3b, subunit 4 [Danio rerio]
Length = 400
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 100/183 (54%), Gaps = 12/183 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ + KD+ TGQ QG F+++ + E+AD AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+ N L G PI+V A + L V +F+G+L+ + EK + + FS +G +
Sbjct: 73 IM-NMIKLYG--KPIRVNKASAHNKNLD-VGANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 172 V-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+MRD + S+G F+ ++ D + AAI A+NG Y C++P+TV +A D K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAFKKDSKGE 185
Query: 227 RPG 229
R G
Sbjct: 186 RHG 188
>gi|347841404|emb|CCD55976.1| hypothetical protein [Botryotinia fuckeliana]
Length = 380
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 101/183 (55%), Gaps = 10/183 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A +++G++ + + + L + G ++ V L KD+ T QG F+++ + E+A+ A R
Sbjct: 13 ATVYIGNIDERVTDSLVWELMLQAGRIVNVHLPKDRVTQNHQGYGFVEFISEEDAEYAAR 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGR-VE 170
+ NQ L G PI+V A ++++ V +LF+G+L+ EK + + FS +G +
Sbjct: 73 IM-NQVRLFG--KPIRVNKASADKQKTVEVGAELFIGNLDPMVDEKTLYDTFSRFGSLIS 129
Query: 171 DVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRPR 227
+ RDE S+G GFV Y++ + + AI +NG Y M ++ ++V++A D K R
Sbjct: 130 PPKIARDESSLSKGYGFVSYANFEASDDAIANMNGQYLM---NKDISVQYAYKKDGKGER 186
Query: 228 PGD 230
GD
Sbjct: 187 HGD 189
>gi|326519747|dbj|BAK00246.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 368
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 100/183 (54%), Gaps = 12/183 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A +VG++ EE + LF + G V+ V + KD+ T QG F+++ + E+AD AI+
Sbjct: 25 ATTYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGR-VE 170
L N L G PI+V A +++ L V LF+G+L+ + EK + + FS +G V
Sbjct: 85 IL-NMLKLYG--KPIRVNKASQDKKSLD-VGANLFIGNLDPEVDEKLLYDTFSAFGVIVT 140
Query: 171 DVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+ +MRD E SRG GFV Y + + AI A+N + C++P+TV +A D K
Sbjct: 141 NPKIMRDPETGNSRGFGFVSYDSFESSDQAIEAMNNQHL---CNRPITVSYAYKKDTKGE 197
Query: 227 RPG 229
R G
Sbjct: 198 RHG 200
>gi|148693298|gb|EDL25245.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C), isoform CRA_b [Mus musculus]
Length = 250
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 99/188 (52%), Gaps = 14/188 (7%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G G + D S L V +P+ +++ + LF G++ L++DK TGQ G
Sbjct: 28 GTNGATDD-----SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYG 82
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQAT 155
F+ Y+ +AD+AI L+ L I+V YA R ++ + L+V L K +
Sbjct: 83 FVNYSDPNDADKAINTLNG---LKLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMS 136
Query: 156 EKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQ 214
+KE+E++FS YGR+ ++ D+ SRG GF+++ R A AI LNG + G +
Sbjct: 137 QKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAE 195
Query: 215 PLTVRFAD 222
P+TV+FA+
Sbjct: 196 PITVKFAN 203
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 124 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIK 183
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG 139
L+ Q L G PI V++A+ ++ G
Sbjct: 184 GLNGQKPL-GAAEPITVKFANNPSQKTG 210
>gi|426387255|ref|XP_004060089.1| PREDICTED: ELAV-like protein 3 isoform 3 [Gorilla gorilla gorilla]
Length = 346
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 100/188 (53%), Gaps = 14/188 (7%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G G + D S L V +P+ +++ + LF G++ L++DK TGQ G
Sbjct: 21 GTNGATDD-----SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYG 75
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQAT 155
F+ Y+ +AD+AI L+ L I+V YA R ++ + L+V L K +
Sbjct: 76 FVNYSDPNDADKAINTLNG---LKLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMS 129
Query: 156 EKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQ 214
+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG + G +
Sbjct: 130 QKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAE 188
Query: 215 PLTVRFAD 222
P+TV+FA+
Sbjct: 189 PITVKFAN 196
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 117 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 176
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG 139
L+ Q L G PI V++A+ ++ G
Sbjct: 177 GLNGQKPL-GAAEPITVKFANNPSQKTG 203
Score = 46.6 bits (109), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L+ +A E + ++F P+G V +V ++RD + +G GFV ++ D A AI
Sbjct: 263 WCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIA 322
Query: 202 ALNGIYTMRGCDQPLTVRFADPKRPR 227
+LNG R ++ L V F K+ +
Sbjct: 323 SLNG---YRLGERVLQVSFKTSKQHK 345
>gi|332219807|ref|XP_003259049.1| PREDICTED: ELAV-like protein 4 isoform 4 [Nomascus leucogenys]
gi|332808951|ref|XP_001135610.2| PREDICTED: ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 isoform 10 [Pan troglodytes]
gi|397518906|ref|XP_003829616.1| PREDICTED: ELAV-like protein 4 isoform 3 [Pan paniscus]
gi|402854509|ref|XP_003891910.1| PREDICTED: ELAV-like protein 4 isoform 4 [Papio anubis]
gi|426329579|ref|XP_004025816.1| PREDICTED: ELAV-like protein 4 isoform 4 [Gorilla gorilla gorilla]
gi|119627246|gb|EAX06841.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu
antigen D), isoform CRA_a [Homo sapiens]
Length = 402
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 82 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 141
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR+
Sbjct: 142 TLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 195
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 196 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 247
>gi|348513245|ref|XP_003444153.1| PREDICTED: splicing factor 3B subunit 4-like [Oreochromis
niloticus]
Length = 401
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 100/183 (54%), Gaps = 12/183 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ + KD+ TGQ QG F+++ + E+AD AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+ N L G PI+V A + L V +F+G+L+ + EK + + FS +G +
Sbjct: 73 IM-NMIKLYG--KPIRVNKASAHNKNLD-VGANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 172 V-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+MRD + S+G F+ ++ D + AAI A+NG Y C++P+TV +A D K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAFKKDSKGE 185
Query: 227 RPG 229
R G
Sbjct: 186 RHG 188
>gi|344278909|ref|XP_003411234.1| PREDICTED: ELAV-like protein 4-like [Loxodonta africana]
Length = 419
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 99 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 158
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR+
Sbjct: 159 TLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 212
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 213 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 264
>gi|327271181|ref|XP_003220366.1| PREDICTED: ELAV-like protein 4-like [Anolis carolinensis]
Length = 410
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 98/189 (51%), Gaps = 11/189 (5%)
Query: 38 RGGPSP--DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGC 95
R PSP S L V +P+ +E+ R LF G + L++DK TGQ G
Sbjct: 74 RNCPSPMQTAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGY 133
Query: 96 CFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQA 154
F+ Y ++A++AI L+ L I+V YA R ++ + L+V L K
Sbjct: 134 GFVNYIDPKDAEKAINTLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTM 187
Query: 155 TEKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCD 213
T+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG G
Sbjct: 188 TQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGAT 246
Query: 214 QPLTVRFAD 222
+P+TV+FA+
Sbjct: 247 EPITVKFAN 255
>gi|291398930|ref|XP_002715153.1| PREDICTED: ELAV-like 4-like isoform 4 [Oryctolagus cuniculus]
Length = 402
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 82 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 141
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR+
Sbjct: 142 TLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 195
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 196 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 247
>gi|395730526|ref|XP_003775742.1| PREDICTED: ELAV-like protein 4 [Pongo abelii]
Length = 402
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 82 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 141
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR+
Sbjct: 142 TLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 195
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 196 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 247
>gi|242039481|ref|XP_002467135.1| hypothetical protein SORBIDRAFT_01g020190 [Sorghum bicolor]
gi|241920989|gb|EER94133.1| hypothetical protein SORBIDRAFT_01g020190 [Sorghum bicolor]
Length = 355
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 99/183 (54%), Gaps = 12/183 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A +VG++ EE + LF + G V+ V + KD+ T QG F+++ + E+AD AI+
Sbjct: 25 ATTYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGR-VE 170
L N L G PI+V A +++ L V LF+G+L+ EK + + FS +G V
Sbjct: 85 IL-NMIKLYG--KPIRVNKASQDKKSLD-VGANLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
Query: 171 DVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+ +MRD E SRG GFV Y + + AI A+N + C++P+TV +A D K
Sbjct: 141 NPKIMRDPETGNSRGFGFVSYDSFESSDQAIEAMNNQHL---CNRPITVSYAYKKDTKGE 197
Query: 227 RPG 229
R G
Sbjct: 198 RHG 200
>gi|145306682|gb|ABP57105.1| CUG-BP and ETR-3-like factor 4 isoform 1 [Gallus gallus]
Length = 351
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 61/103 (59%), Gaps = 3/103 (2%)
Query: 125 PIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRG 184
PIQV+ AD E + KLFVG LNKQ +E +V +F +G +E+ ++R S+G
Sbjct: 4 PIQVKPADSESR---GEDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKG 60
Query: 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
C FVKYS A AAINAL+G TM G L V+FAD + R
Sbjct: 61 CAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKER 103
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K E+D+R LFE GN+ E +++ G +GC F+KY++ EA AI A
Sbjct: 20 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPD-GNSKGCAFVKYSSHAEAQAAINA 78
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH T+PG + V++AD ++ER
Sbjct: 79 LHGSQTMPGASSSLVVKFADTDKER 103
>gi|542846|pir||JC2116 hippocampal 38K autoantigen protein - human
gi|2340828|dbj|BAA21838.1| PLE21 protein [Homo sapiens]
Length = 350
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 100/188 (53%), Gaps = 14/188 (7%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G G + D S L V +P+ +++ + LF G++ L++DK TGQ G
Sbjct: 20 GTNGATDD-----SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYG 74
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQAT 155
F+ Y+ +AD+AI L+ L I+V YA R ++ + L+V L K +
Sbjct: 75 FVNYSDPNDADKAINTLNG---LKLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMS 128
Query: 156 EKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQ 214
+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG + G +
Sbjct: 129 QKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GARE 187
Query: 215 PLTVRFAD 222
P+TV+FA+
Sbjct: 188 PITVKFAN 195
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 116 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 175
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG 139
L+ Q L G PI V++A+ ++ G
Sbjct: 176 GLNGQKPL-GAREPITVKFANNPSQKTG 202
>gi|410967448|ref|XP_003990231.1| PREDICTED: ELAV-like protein 4 [Felis catus]
Length = 494
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 94/175 (53%), Gaps = 9/175 (5%)
Query: 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRA 109
S L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++A
Sbjct: 61 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 120
Query: 110 IRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGR 168
I L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR
Sbjct: 121 INTLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 174
Query: 169 VEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
+ ++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 175 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 228
>gi|340725296|ref|XP_003401008.1| PREDICTED: CUGBP Elav-like family member 4-like isoform 1 [Bombus
terrestris]
Length = 373
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 63/103 (61%), Gaps = 4/103 (3%)
Query: 125 PIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRG 184
PIQV+ AD E + KLFVG L+KQ TE +V ++F+ +G +E+ ++R SRG
Sbjct: 4 PIQVKPADSENRG----DRKLFVGMLSKQQTEDDVRQLFTAFGTIEECTILRGPDGSSRG 59
Query: 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
C FVK S ALAAIN L+G TM G L V+FAD ++ R
Sbjct: 60 CAFVKLSSHQEALAAINTLHGSQTMPGASSSLVVKFADTEKER 102
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K E+D+R LF G + E +++ G +GC F+K ++ +EA AI
Sbjct: 19 KLFVGMLSKQQTEDDVRQLFTAFGTIEECTILRGPD-GSSRGCAFVKLSSHQEALAAINT 77
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH T+PG + V++AD E+ER
Sbjct: 78 LHGSQTMPGASSSLVVKFADTEKER 102
>gi|52547949|gb|AAM28203.2| splicing factor 3b subunit 4 [Danio rerio]
Length = 400
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 100/183 (54%), Gaps = 12/183 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ + KD+ TGQ QG F+++ + E+AD AI+
Sbjct: 13 AAVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+ N L G PI+V A + L V +F+G+L+ + EK + + FS +G +
Sbjct: 73 IM-NMIKLYG--KPIRVNKASAHNKNLD-VGANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 172 V-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+MRD + S+G F+ ++ D + AAI A+NG Y C++P+TV +A D K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAFKKDSKGE 185
Query: 227 RPG 229
R G
Sbjct: 186 RHG 188
>gi|294886537|ref|XP_002771747.1| DAZ-associated protein, putative [Perkinsus marinus ATCC 50983]
gi|239875509|gb|EER03563.1| DAZ-associated protein, putative [Perkinsus marinus ATCC 50983]
Length = 422
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 99/205 (48%), Gaps = 34/205 (16%)
Query: 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADR 108
S+ KLFV +P E D+R +FEE+G V +V +++D+ T Q +G F+++
Sbjct: 11 STSVKLFVRGLPVHYPESDLRAVFEEYGMVEDVFILRDRSTMQSRGMAFVRFRDIPSGMA 70
Query: 109 AIRALHNQHTLPGGVG---------------------PIQVRYADGERERLG-------- 139
AI+AL N H L P+ V A GE ERLG
Sbjct: 71 AIKAL-NGHRLSHNTSTSCIDNDVESVDDMSFDQSHIPLSVSLAQGEAERLGMHGEVVAT 129
Query: 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAA 199
+ KLFV L E+E+ IF P+GR+ +V++ + FV+++ ++ AL A
Sbjct: 130 GGDTKLFVSGLGPATQEEELRTIFEPFGRINEVHVPGPHALYA----FVRFAEKEDALKA 185
Query: 200 INALNGIYTMRGCDQPLTVRFADPK 224
I +NG T+ G +PL V+ A+ +
Sbjct: 186 IREVNGRVTVEGSQRPLEVKVAESR 210
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Query: 136 ERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRD 194
+R+ + KLFV L E ++ +F YG VEDV+++RD QSRG FV++ RD
Sbjct: 7 DRMESTSVKLFVRGLPVHYPESDLRAVFEEYGMVEDVFILRDRSTMQSRGMAFVRF--RD 64
Query: 195 M--ALAAINALNG 205
+ +AAI ALNG
Sbjct: 65 IPSGMAAIKALNG 77
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAI 110
A +FV SVP E+D+R F GN++ ++ DK TG +G FI Y ++ A RA+
Sbjct: 324 ANVFVFSVPDAWTEDDLRDHFSSFGNIVSAKVVVDKHTGLSRGYGFISYDNAQSAGRAV 382
Score = 46.6 bits (109), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 11/114 (9%)
Query: 19 LPQSLPVPQLSGQKRGFSGRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNV 78
+P S+ + Q ++ G G ++V KLFV + +EE++R +FE G +
Sbjct: 106 IPLSVSLAQGEAERLGMHG------EVVATGGDTKLFVSGLGPATQEEELRTIFEPFGRI 159
Query: 79 IEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYAD 132
EV + G F+++A E+A +AIR ++ + T+ G P++V+ A+
Sbjct: 160 NEVHV-----PGPHALYAFVRFAEKEDALKAIREVNGRVTVEGSQRPLEVKVAE 208
>gi|426387253|ref|XP_004060088.1| PREDICTED: ELAV-like protein 3 isoform 2 [Gorilla gorilla gorilla]
Length = 366
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 100/188 (53%), Gaps = 14/188 (7%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G G + D S L V +P+ +++ + LF G++ L++DK TGQ G
Sbjct: 21 GTNGATDD-----SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYG 75
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQAT 155
F+ Y+ +AD+AI L+ L I+V YA R ++ + L+V L K +
Sbjct: 76 FVNYSDPNDADKAINTLNG---LKLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMS 129
Query: 156 EKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQ 214
+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG + G +
Sbjct: 130 QKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAE 188
Query: 215 PLTVRFAD 222
P+TV+FA+
Sbjct: 189 PITVKFAN 196
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 117 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 176
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG 139
L+ Q L G PI V++A+ ++ G
Sbjct: 177 GLNGQKPL-GAAEPITVKFANNPSQKTG 203
Score = 46.6 bits (109), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L+ +A E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 285 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 204 NGIYTMRGCDQPLTVRFADPK 224
NG R ++ L V F K
Sbjct: 345 NG---YRLGERVLQVSFKTSK 362
>gi|390465922|ref|XP_003733491.1| PREDICTED: ELAV-like protein 4 isoform 4 [Callithrix jacchus]
gi|403258121|ref|XP_003921627.1| PREDICTED: ELAV-like protein 4 isoform 3 [Saimiri boliviensis
boliviensis]
Length = 402
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 82 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 141
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR+
Sbjct: 142 TLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 195
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 196 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 247
>gi|297735183|emb|CBI17545.3| unnamed protein product [Vitis vinifera]
Length = 238
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 100/183 (54%), Gaps = 12/183 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A +VG++ EE + LF + G V+ V + KD+ T QG F+++ + E+AD AI+
Sbjct: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGR-VE 170
L N L G PI+V A +++ L V LFVG+L+ EK + + FS +G V
Sbjct: 85 VL-NMIKLYG--KPIRVNKASQDKKSLD-VGANLFVGNLDPDVDEKLLYDTFSAFGVIVT 140
Query: 171 DVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+ +MRD + SRG GFV Y + + AAI A+NG Y C++ +TV +A D K
Sbjct: 141 NPKIMRDPDTGNSRGFGFVSYDSFEASDAAIEAMNGQYL---CNRQITVSYAYKKDTKGE 197
Query: 227 RPG 229
R G
Sbjct: 198 RHG 200
>gi|426387251|ref|XP_004060087.1| PREDICTED: ELAV-like protein 3 isoform 1 [Gorilla gorilla gorilla]
gi|355703162|gb|EHH29653.1| Hu-antigen C [Macaca mulatta]
Length = 339
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 100/188 (53%), Gaps = 14/188 (7%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G G + D S L V +P+ +++ + LF G++ L++DK TGQ G
Sbjct: 21 GTNGATDD-----SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYG 75
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQAT 155
F+ Y+ +AD+AI L+ L I+V YA R ++ + L+V L K +
Sbjct: 76 FVNYSDPNDADKAINTLNG---LKLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMS 129
Query: 156 EKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQ 214
+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG + G +
Sbjct: 130 QKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAE 188
Query: 215 PLTVRFAD 222
P+TV+FA+
Sbjct: 189 PITVKFAN 196
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 104/226 (46%), Gaps = 54/226 (23%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 117 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 176
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG-------------------------------A 140
L+ Q L G PI V++A+ ++ G A
Sbjct: 177 GLNGQKPL-GAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRFSPIA 235
Query: 141 VE------------------YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQ 181
++ + +FV +L+ +A E + ++F P+G V +V ++RD +
Sbjct: 236 IDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNK 295
Query: 182 SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+G GFV ++ D A AI +LNG R ++ L V F K+ +
Sbjct: 296 CKGFGFVTMTNYDEAAMAIASLNG---YRLGERVLQVSFKTSKQHK 338
>gi|115482332|ref|NP_001064759.1| Os10g0457000 [Oryza sativa Japonica Group]
gi|31432465|gb|AAP54095.1| Splicing factor 3B subunit 4, putative, expressed [Oryza sativa
Japonica Group]
gi|113639368|dbj|BAF26673.1| Os10g0457000 [Oryza sativa Japonica Group]
gi|215737182|dbj|BAG96111.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218184664|gb|EEC67091.1| hypothetical protein OsI_33883 [Oryza sativa Indica Group]
Length = 355
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 99/183 (54%), Gaps = 12/183 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A +VG++ EE + LF + G V+ V + KD+ T QG F+++ + E+AD AI+
Sbjct: 25 ATTYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGR-VE 170
L N L G PI+V A +++ L V LF+G+L+ EK + + FS +G V
Sbjct: 85 IL-NMIKLYG--KPIRVNKASQDKKSLD-VGANLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
Query: 171 DVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+ +MRD E SRG GFV Y + + AI A+N + C++P+TV +A D K
Sbjct: 141 NPKIMRDPETGNSRGFGFVSYDSFESSDQAIEAMNNQHL---CNRPITVSYAYKKDTKGE 197
Query: 227 RPG 229
R G
Sbjct: 198 RHG 200
>gi|49355761|ref|NP_001411.2| ELAV-like protein 3 isoform 1 [Homo sapiens]
gi|21264436|sp|Q14576.3|ELAV3_HUMAN RecName: Full=ELAV-like protein 3; AltName: Full=Hu-antigen C;
Short=HuC; AltName: Full=Paraneoplastic cerebellar
degeneration-associated antigen; AltName:
Full=Paraneoplastic limbic encephalitis antigen 21
gi|119604626|gb|EAW84220.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C), isoform CRA_a [Homo sapiens]
gi|380783929|gb|AFE63840.1| ELAV-like protein 3 isoform 1 [Macaca mulatta]
Length = 367
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 100/188 (53%), Gaps = 14/188 (7%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G G + D S L V +P+ +++ + LF G++ L++DK TGQ G
Sbjct: 29 GTNGATDD-----SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYG 83
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQAT 155
F+ Y+ +AD+AI L+ L I+V YA R ++ + L+V L K +
Sbjct: 84 FVNYSDPNDADKAINTLNG---LKLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMS 137
Query: 156 EKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQ 214
+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG + G +
Sbjct: 138 QKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAE 196
Query: 215 PLTVRFAD 222
P+TV+FA+
Sbjct: 197 PITVKFAN 204
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 125 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG 139
L+ Q L G PI V++A+ ++ G
Sbjct: 185 GLNGQKPL-GAAEPITVKFANNPSQKTG 211
Score = 46.6 bits (109), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L+ +A E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 204 NGIYTMRGCDQPLTVRFADPKRPR 227
NG R ++ L V F K+ +
Sbjct: 346 NG---YRLGERVLQVSFKTSKQHK 366
>gi|301771944|ref|XP_002921434.1| PREDICTED: ELAV-like protein 3-like [Ailuropoda melanoleuca]
Length = 350
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 100/188 (53%), Gaps = 14/188 (7%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G G + D S L V +P+ +++ + LF G++ L++DK TGQ G
Sbjct: 32 GTNGATDD-----SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYG 86
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQAT 155
F+ Y+ +AD+AI L+ L I+V YA R ++ + L+V L K +
Sbjct: 87 FVNYSDPNDADKAINTLNG---LKLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMS 140
Query: 156 EKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQ 214
+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG + G +
Sbjct: 141 QKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAE 199
Query: 215 PLTVRFAD 222
P+TV+FA+
Sbjct: 200 PITVKFAN 207
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 104/226 (46%), Gaps = 54/226 (23%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 128 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 187
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG-------------------------------A 140
L+ Q L G PI V++A+ ++ G A
Sbjct: 188 GLNGQKPL-GAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRFSPIA 246
Query: 141 VE------------------YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQ 181
++ + +FV +L+ +A E + ++F P+G V +V ++RD +
Sbjct: 247 IDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNK 306
Query: 182 SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+G GFV ++ D A AI +LNG R ++ L V F K+ +
Sbjct: 307 CKGFGFVTMTNYDEAAMAIASLNG---YRLGERVLQVSFKTSKQHK 349
>gi|221112748|ref|XP_002162771.1| PREDICTED: ELAV-like protein 3-like [Hydra magnipapillata]
Length = 376
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 89/174 (51%), Gaps = 12/174 (6%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
L + +P+ EE++R LF G + LI+DK T G F+ Y + +A +AI +L
Sbjct: 47 LIINYLPQEMTEEELRTLFSSVGPLESCKLIRDKVTRASLGYAFVNYQHAADARKAIESL 106
Query: 114 HNQHTLPGGVGPIQVRYADGERERLGAVEYK---LFVGSLNKQATEKEVEEIFSPYGRVE 170
I+V A R E K L+V L E ++ E+F+ YG +
Sbjct: 107 QGMKLTNK---TIKVSVA-----RPSCTEIKNANLYVSGLPLTCNENDLRELFASYGSII 158
Query: 171 DVYLMRDELKQSRGCGFVKYSHRDMALAAINALNG-IYTMRGCDQPLTVRFADP 223
+ ++ +E QSRG GFV++ R+ A AAIN LN I + G +PLTV+FA+P
Sbjct: 159 TIKVLYEESGQSRGVGFVRFDKRNDAEAAINGLNNRIPEINGAIKPLTVKFANP 212
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L A+E + ++FS +G ++ ++ DE K+ +G GFV +H + A AI
Sbjct: 288 WCVFVYNLPSDASELTLFQLFSKFGAIQSTRVVYDENTKKCKGFGFVNMAHYEDATMAIL 347
Query: 202 ALNGIYTMRGCDQPLTVRFADPKRPR 227
LNG RG +PL V F KRPR
Sbjct: 348 HLNGYCCERG--KPLQVSF---KRPR 368
>gi|154294661|ref|XP_001547770.1| hypothetical protein BC1G_13457 [Botryotinia fuckeliana B05.10]
Length = 381
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 101/183 (55%), Gaps = 10/183 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A +++G++ + + + L + G ++ V L KD+ T QG F+++ + E+A+ A R
Sbjct: 14 ATVYIGNIDERVTDSLVWELMLQAGRIVNVHLPKDRVTQNHQGYGFVEFISEEDAEYAAR 73
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGR-VE 170
+ NQ L G PI+V A ++++ V +LF+G+L+ EK + + FS +G +
Sbjct: 74 IM-NQVRLFG--KPIRVNKASADKQKTVEVGAELFIGNLDPMVDEKTLYDTFSRFGSLIS 130
Query: 171 DVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRPR 227
+ RDE S+G GFV Y++ + + AI +NG Y M ++ ++V++A D K R
Sbjct: 131 PPKIARDESSLSKGYGFVSYANFEASDDAIANMNGQYLM---NKDISVQYAYKKDGKGER 187
Query: 228 PGD 230
GD
Sbjct: 188 HGD 190
>gi|357146461|ref|XP_003574000.1| PREDICTED: splicing factor 3B subunit 4-like [Brachypodium
distachyon]
Length = 359
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 100/183 (54%), Gaps = 12/183 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A +VG++ EE + LF + G V+ V + KD+ T QG F+++ + E+AD AI+
Sbjct: 25 ATTYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGR-VE 170
L N L G PI+V A +++ L V LF+G+L+ + EK + + FS +G V
Sbjct: 85 IL-NMLKLYG--KPIRVNKASQDKKSLD-VGANLFIGNLDPEVDEKLLYDTFSAFGVIVT 140
Query: 171 DVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+ +MRD E SRG GFV Y + + AI A+N + C++P+TV +A D K
Sbjct: 141 NPKIMRDPETGNSRGFGFVSYDSFESSDQAIEAMNNQHL---CNRPITVSYAYKKDTKGE 197
Query: 227 RPG 229
R G
Sbjct: 198 RHG 200
>gi|355685803|gb|AER97853.1| ELAV-like protein 1 [Mustela putorius furo]
Length = 343
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 118/248 (47%), Gaps = 20/248 (8%)
Query: 42 SPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYA 101
+ D D L V +P+ ++++R LF G V LI+DK G G F+ Y
Sbjct: 28 AEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYV 87
Query: 102 TSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEE 161
T+++A+RAI L+ L I+V YA E + + L++ L + T+K+VE+
Sbjct: 88 TAKDAERAINTLNG---LRLQSKTIKVSYARPSSEVIK--DANLYISGLPRTMTQKDVED 142
Query: 162 IFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220
+FS +GR+ + ++ D+ SRG F+++ R A AI + NG + G +P+TV+F
Sbjct: 143 MFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG-HKPPGSSEPITVKF 201
Query: 221 ADPKRPRPGDSRSGPTFGGPGFGPRFQPPSPRPPPNFGDPITDQIPQNAWHPMSPRNMGP 280
A P +++ + P+ R FG P+ Q + + PM +M
Sbjct: 202 A----ANPNQNKNVAL-----LSQLYHSPARR----FGGPVHHQAQRFRFSPMGVDHMSG 248
Query: 281 LSNPGIRG 288
LS + G
Sbjct: 249 LSGVNVPG 256
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 94/222 (42%), Gaps = 53/222 (23%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L++ +P+T ++D+ +F G +I ++ D+ TG +G FI++ EA+ AI
Sbjct: 124 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 183
Query: 112 ALHNQHTLPGGVGPIQVR-----------------YADGERERLGAVEYK---------- 144
+ N H PG PI V+ Y R G V ++
Sbjct: 184 SF-NGHKPPGSSEPITVKFAANPNQNKNVALLSQLYHSPARRFGGPVHHQAQRFRFSPMG 242
Query: 145 ---------------------LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQS 182
+F+ +L + A E + ++F P+G V +V ++RD +
Sbjct: 243 VDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKC 302
Query: 183 RGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224
+G GFV ++ + A AI +LNG R D+ L V F K
Sbjct: 303 KGFGFVTMTNYEEAAMAIASLNG---YRLGDKILQVSFKTNK 341
>gi|340502339|gb|EGR29040.1| RNA binding protein, putative [Ichthyophthirius multifiliis]
Length = 316
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 74/120 (61%), Gaps = 5/120 (4%)
Query: 105 EADRAIRALHNQHTLPGGVGPIQVRYADGERERLGA---VEYKLFVGSLNKQATEKEVEE 161
+A+RAI L N+ +LPG I++++AD E ERLG ++KLFVGSL K TE+ + +
Sbjct: 3 DAERAIADLKNK-SLPGMKNNIEIKWADNEEERLGVNQDSDHKLFVGSLPKTCTEQNIRD 61
Query: 162 IFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221
IF +G +E+++LM+D +R F+KY ++ A AI LN + + P+ VRFA
Sbjct: 62 IFETFGEIEELHLMKDSQNNTRQA-FLKYKLKEKAHLAIRNLNSQVYIGNSENPIEVRFA 120
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEE 105
V+ S KLFVGS+PKT E++IR +FE G + E+ L+KD + +Q F+KY E+
Sbjct: 37 VNQDSDHKLFVGSLPKTCTEQNIRDIFETFGEIEELHLMKDSQNNTRQ--AFLKYKLKEK 94
Query: 106 ADRAIRALHNQHTLPGGVGPIQVRYA 131
A AIR L++Q + PI+VR+A
Sbjct: 95 AHLAIRNLNSQVYIGNSENPIEVRFA 120
Score = 43.5 bits (101), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 44 DLVDGSSF----AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
D+ DG + LF+ +P R+ D+ +F + G VI A + + G +G FI
Sbjct: 212 DVYDGKKHGPPGSNLFIFHLPTDFRDSDLERMFSQFGEVIS-ARVNTRPDGTSKGFGFIS 270
Query: 100 YATSEEADRAIRALH 114
Y +++EA+ AIR L+
Sbjct: 271 YNSAKEAEDAIRNLN 285
>gi|256083494|ref|XP_002577978.1| splicing factor 3b subunit 4 (fragment) [Schistosoma mansoni]
gi|350645079|emb|CCD60205.1| splicing factor 3b, subunit 4 (fragment),putative [Schistosoma
mansoni]
Length = 344
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 100/185 (54%), Gaps = 12/185 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ V + KD+ Q QG F+++ T E+AD A+R
Sbjct: 13 ATIYVGGLDEKVNESILWELFLQAGPVVNVHMPKDRINMQHQGYGFVEFMTEEDADYAMR 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+ N L G PI+V A ++ L + +F+G+L+ + EK + + FS +G +
Sbjct: 73 IM-NMIKLYG--KPIRVNKASANQKNLD-IGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 128
Query: 172 V-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+MRD E S+G F+ ++ + + AAI A+NG Y C++ +T+ +A D K
Sbjct: 129 TPKIMRDPETGNSKGYAFINFASFEASDAAIEAMNGQYL---CNRAITISYAFKKDSKGE 185
Query: 227 RPGDS 231
R G +
Sbjct: 186 RHGSA 190
>gi|410950486|ref|XP_003981936.1| PREDICTED: ELAV-like protein 3 isoform 1 [Felis catus]
gi|431918945|gb|ELK17812.1| ELAV-like protein 3 [Pteropus alecto]
Length = 352
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 100/188 (53%), Gaps = 14/188 (7%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G G + D S L V +P+ +++ + LF G++ L++DK TGQ G
Sbjct: 21 GTNGATDD-----SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYG 75
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQAT 155
F+ Y+ +AD+AI L+ L I+V YA R ++ + L+V L K +
Sbjct: 76 FVNYSDPNDADKAINTLNG---LKLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMS 129
Query: 156 EKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQ 214
+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG + G +
Sbjct: 130 QKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAE 188
Query: 215 PLTVRFAD 222
P+TV+FA+
Sbjct: 189 PITVKFAN 196
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 117 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 176
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG 139
L+ Q L G PI V++A+ ++ G
Sbjct: 177 GLNGQKPL-GAAEPITVKFANNPSQKTG 203
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L+ +A E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 271 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 330
Query: 204 NGIYTMRGCDQPLTVRFADPKRPR 227
NG R ++ L V F K+ +
Sbjct: 331 NG---YRLGERVLQVSFKTSKQHK 351
>gi|403302354|ref|XP_003941825.1| PREDICTED: ELAV-like protein 3 isoform 1 [Saimiri boliviensis
boliviensis]
Length = 352
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 100/188 (53%), Gaps = 14/188 (7%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G G + D S L V +P+ +++ + LF G++ L++DK TGQ G
Sbjct: 21 GTNGATDD-----SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYG 75
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQAT 155
F+ Y+ +AD+AI L+ L I+V YA R ++ + L+V L K +
Sbjct: 76 FVNYSDPNDADKAINTLNG---LKLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMS 129
Query: 156 EKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQ 214
+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG + G +
Sbjct: 130 QKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAE 188
Query: 215 PLTVRFAD 222
P+TV+FA+
Sbjct: 189 PITVKFAN 196
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 117 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 176
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG 139
L+ Q L G PI V++A+ ++ G
Sbjct: 177 GLNGQKPL-GAAEPITVKFANNPSQKTG 203
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L+ +A E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 271 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 330
Query: 204 NGIYTMRGCDQPLTVRFADPKRPR 227
NG R ++ L V F K+ +
Sbjct: 331 NG---YRLGERVLQVSFKTSKQHK 351
>gi|426229023|ref|XP_004008593.1| PREDICTED: ELAV-like protein 3 isoform 1 [Ovis aries]
Length = 359
Score = 90.1 bits (222), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 100/188 (53%), Gaps = 14/188 (7%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G G + D S L V +P+ +++ + LF G++ L++DK TGQ G
Sbjct: 28 GTNGATDD-----SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYG 82
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQAT 155
F+ Y+ +AD+AI L+ L I+V YA R ++ + L+V L K +
Sbjct: 83 FVNYSDPNDADKAINTLNG---LKLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMS 136
Query: 156 EKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQ 214
+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG + G +
Sbjct: 137 QKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAE 195
Query: 215 PLTVRFAD 222
P+TV+FA+
Sbjct: 196 PITVKFAN 203
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 124 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 183
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG 139
L+ Q L G PI V++A+ ++ G
Sbjct: 184 GLNGQKPL-GAAEPITVKFANNPSQKTG 210
Score = 46.2 bits (108), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L+ +A E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 204 NGIYTMRGCDQPLTVRFADPKRPR 227
NG R ++ L V F K+ +
Sbjct: 338 NG---YRLGERVLQVSFKTSKQHK 358
>gi|222612944|gb|EEE51076.1| hypothetical protein OsJ_31773 [Oryza sativa Japonica Group]
Length = 391
Score = 90.1 bits (222), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 96/175 (54%), Gaps = 9/175 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A +VG++ EE + LF + G V+ V + KD+ T QG F+++ + E+AD AI+
Sbjct: 25 ATTYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGR-VE 170
L N L G PI+V A +++ L V LF+G+L+ EK + + FS +G V
Sbjct: 85 IL-NMIKLYG--KPIRVNKASQDKKSLD-VGANLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
Query: 171 DVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224
+ +MRD E SRG GFV Y + + AI A+N + C++P+TV +A K
Sbjct: 141 NPKIMRDPETGNSRGFGFVSYDSFESSDQAIEAMNNQHL---CNRPITVSYAYKK 192
>gi|224775835|gb|ACN62426.1| MIP02642p [Drosophila melanogaster]
Length = 237
Score = 90.1 bits (222), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 56/81 (69%)
Query: 142 EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAIN 201
E KLFVG LNK+ TE +V ++F+ +G +E+ ++RD+ QS+GC FV ++ + A+ AI
Sbjct: 139 ERKLFVGMLNKKYTEADVRQLFTGHGTIEECTVLRDQAGQSKGCAFVTFATKQNAIGAIK 198
Query: 202 ALNGIYTMRGCDQPLTVRFAD 222
AL+ TM GC PL V+FAD
Sbjct: 199 ALHQSQTMEGCSAPLVVKFAD 219
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 55/93 (59%), Gaps = 4/93 (4%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
P+P LV KLFVG + K E D+R LF HG + E +++D+ GQ +GC F+
Sbjct: 131 NPAPYLVPER---KLFVGMLNKKYTEADVRQLFTGHGTIEECTVLRDQ-AGQSKGCAFVT 186
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYAD 132
+AT + A AI+ALH T+ G P+ V++AD
Sbjct: 187 FATKQNAIGAIKALHQSQTMEGCSAPLVVKFAD 219
>gi|49355765|ref|NP_115657.2| ELAV-like protein 3 isoform 2 [Homo sapiens]
gi|119604627|gb|EAW84221.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C), isoform CRA_b [Homo sapiens]
gi|261861050|dbj|BAI47047.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3
[synthetic construct]
gi|380783931|gb|AFE63841.1| ELAV-like protein 3 isoform 2 [Macaca mulatta]
Length = 360
Score = 90.1 bits (222), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 100/188 (53%), Gaps = 14/188 (7%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G G + D S L V +P+ +++ + LF G++ L++DK TGQ G
Sbjct: 29 GTNGATDD-----SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYG 83
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQAT 155
F+ Y+ +AD+AI L+ L I+V YA R ++ + L+V L K +
Sbjct: 84 FVNYSDPNDADKAINTLNG---LKLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMS 137
Query: 156 EKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQ 214
+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG + G +
Sbjct: 138 QKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAE 196
Query: 215 PLTVRFAD 222
P+TV+FA+
Sbjct: 197 PITVKFAN 204
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 125 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG 139
L+ Q L G PI V++A+ ++ G
Sbjct: 185 GLNGQKPL-GAAEPITVKFANNPSQKTG 211
Score = 46.2 bits (108), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L+ +A E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 204 NGIYTMRGCDQPLTVRFADPKRPR 227
NG R ++ L V F K+ +
Sbjct: 339 NG---YRLGERVLQVSFKTSKQHK 359
>gi|149034410|gb|EDL89147.1| similar to bruno-like 5, RNA binding protein (predicted) [Rattus
norvegicus]
Length = 319
Score = 90.1 bits (222), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 64/103 (62%), Gaps = 2/103 (1%)
Query: 125 PIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRG 184
PIQV+ AD E G + KLFVG LNKQ +E++V +F P+G +++ ++R S+G
Sbjct: 4 PIQVKPADSENR--GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKG 61
Query: 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
C FVK+S A AAI+AL+G TM G L V+FAD + R
Sbjct: 62 CAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKER 104
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K EED+ LF+ G + E +++ G +GC F+K+++ EA AI A
Sbjct: 21 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPD-GSSKGCAFVKFSSHTEAQAAIHA 79
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH T+PG + V++AD ++ER
Sbjct: 80 LHGSQTMPGASSSLVVKFADTDKER 104
>gi|344301066|gb|EGW31378.1| hypothetical protein SPAPADRAFT_154438 [Spathaspora passalidarum
NRRL Y-27907]
Length = 507
Score = 90.1 bits (222), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 95/178 (53%), Gaps = 12/178 (6%)
Query: 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEAD 107
G K+FVG + EE +R F ++GNV++ +++D TG+ +G F+ + + D
Sbjct: 168 GRDSGKMFVGGLNWDTTEEGLRDYFSKYGNVLDYTIMRDSATGRSRGFGFLTFEDPKSVD 227
Query: 108 RAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYG 167
I+ H L G + + A E++R+G K+FVG ++ TEKE + F+ YG
Sbjct: 228 EVIKV---DHILDGKLIDPKRAIAREEQDRVG----KIFVGGIDPLVTEKEFYDFFAQYG 280
Query: 168 RVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224
+ D LM D + +SRG GF+ Y D A+ + +N +++G + + V+ A+P+
Sbjct: 281 SIIDAQLMVDKDTGRSRGFGFITYDSPD-AVDRV-TVNKYLSLKG--RAMEVKRAEPR 334
>gi|360043584|emb|CCD81130.1| elav (embryonic lethal, abnormal vision,drosophila)-like protein
[Schistosoma mansoni]
Length = 682
Score = 90.1 bits (222), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 90/173 (52%), Gaps = 10/173 (5%)
Query: 65 EEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVG 124
+E++R LF + G + LI+DK TGQ G F+ Y + +A+RAIRAL N+ L
Sbjct: 3 QEEMRILFSKIGKLASCKLIRDKLTGQSLGYGFVNYVDASDAERAIRAL-NKMRLQNKT- 60
Query: 125 PIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSR 183
I+V A E + L++ L K TE ++E++F P G++ ++ D QS+
Sbjct: 61 -IKVSLARPSCESIKGAN--LYICGLPKLMTESDLEKLFHPCGKIITSRILFDSNTGQSK 117
Query: 184 GCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPT 236
G GF+++ R A AI NG D PL V+FA+ P +++G T
Sbjct: 118 GVGFIRFDQRHEAELAIQQFNGYRVGSIADSPLIVKFANI----PTSNKNGIT 166
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
PS + + G A L++ +PK E D+ LF G +I ++ D TGQ +G FI++
Sbjct: 68 PSCESIKG---ANLYICGLPKLMTESDLEKLFHPCGKIITSRILFDSNTGQSKGVGFIRF 124
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYAD 132
EA+ AI+ + P+ V++A+
Sbjct: 125 DQRHEAELAIQQFNGYRVGSIADSPLIVKFAN 156
>gi|156048690|ref|XP_001590312.1| hypothetical protein SS1G_09077 [Sclerotinia sclerotiorum 1980]
gi|154693473|gb|EDN93211.1| hypothetical protein SS1G_09077 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 380
Score = 90.1 bits (222), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 101/183 (55%), Gaps = 10/183 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A +++G++ + + + L + G ++ V L KD+ T QG F+++ + E+A+ A R
Sbjct: 12 ATVYIGNIDERVTDSLVWELMLQAGRIVNVHLPKDRVTQNHQGYGFVEFISEEDAEYAAR 71
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGR-VE 170
+ NQ L G PI+V A ++++ V +LF+G+L+ EK + + FS +G +
Sbjct: 72 IM-NQVRLFG--KPIRVNKASADKQKTVEVGAELFIGNLDPMVDEKTLYDTFSRFGSLIS 128
Query: 171 DVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRPR 227
+ RDE S+G GFV Y++ + + AI +NG Y M ++ ++V++A D K R
Sbjct: 129 PPKIARDESSLSKGYGFVSYANFEASDDAIANMNGQYLM---NKDISVQYAYKKDGKGER 185
Query: 228 PGD 230
GD
Sbjct: 186 HGD 188
>gi|145306684|gb|ABP57106.1| CUG-BP and ETR-3-like factor 4 isoform 2 [Gallus gallus]
Length = 371
Score = 90.1 bits (222), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 61/103 (59%), Gaps = 3/103 (2%)
Query: 125 PIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRG 184
PIQV+ AD E + KLFVG LNKQ +E +V +F +G +E+ ++R S+G
Sbjct: 4 PIQVKPADSESR---GEDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKG 60
Query: 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
C FVKYS A AAINAL+G TM G L V+FAD + R
Sbjct: 61 CAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKER 103
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K E+D+R LFE GN+ E +++ G +GC F+KY++ EA AI A
Sbjct: 20 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPD-GNSKGCAFVKYSSHAEAQAAINA 78
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH T+PG + V++AD ++ER
Sbjct: 79 LHGSQTMPGASSSLVVKFADTDKER 103
>gi|193783541|dbj|BAG53452.1| unnamed protein product [Homo sapiens]
Length = 424
Score = 90.1 bits (222), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 100/185 (54%), Gaps = 12/185 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ + KD+ TGQ QG F+++ + E+AD AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+ N L G PI+V A + L V +F+ +L+ + EK + + FS +G +
Sbjct: 73 IM-NMIKLYG--KPIRVNKALAHNKNLD-VGANIFIENLDPEIDEKLLYDTFSAFGVILQ 128
Query: 172 V-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+MRD + S+G F+ ++ D + AAI A+NG Y C++P+TV +A D K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAFKKDSKGE 185
Query: 227 RPGDS 231
R G +
Sbjct: 186 RHGSA 190
>gi|311248628|ref|XP_003123218.1| PREDICTED: LOW QUALITY PROTEIN: ELAV-like protein 3-like [Sus
scrofa]
Length = 359
Score = 90.1 bits (222), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 100/188 (53%), Gaps = 14/188 (7%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G G + D S L V +P+ +++ + LF G++ L++DK TGQ G
Sbjct: 28 GTNGATDD-----SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYG 82
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQAT 155
F+ Y+ +AD+AI L+ L I+V YA R ++ + L+V L K +
Sbjct: 83 FVNYSDPNDADKAINTLNG---LKLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMS 136
Query: 156 EKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQ 214
+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG + G +
Sbjct: 137 QKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAE 195
Query: 215 PLTVRFAD 222
P+TV+FA+
Sbjct: 196 PITVKFAN 203
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 124 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 183
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG 139
L+ Q L G PI V++A+ ++ G
Sbjct: 184 GLNGQKPL-GAAEPITVKFANNPSQKTG 210
Score = 46.2 bits (108), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L+ +A E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 204 NGIYTMRGCDQPLTVRFADPKRPR 227
NG R ++ L V F K+ +
Sbjct: 338 NG---YRLGERVLQVSFKTSKQHK 358
>gi|294941928|ref|XP_002783310.1| DAZ-associated protein, putative [Perkinsus marinus ATCC 50983]
gi|239895725|gb|EER15106.1| DAZ-associated protein, putative [Perkinsus marinus ATCC 50983]
Length = 429
Score = 90.1 bits (222), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 101/204 (49%), Gaps = 32/204 (15%)
Query: 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADR 108
S+ KLFV +P E D+R +FEE+G V +V +++D+ T Q +G F+++
Sbjct: 11 STSVKLFVRGLPVHYPESDLRAVFEEYGMVEDVFILRDRSTMQSRGMAFVRFRDIPSGMA 70
Query: 109 AIRAL------HNQHT--LPGGVG------------PIQVRYADGERERLG--------A 140
AI+AL HN T + V P+ V A GE ERLG
Sbjct: 71 AIKALNGYRLCHNTSTSCIDNDVESVNDMSFAQSHIPLSVSLAQGEAERLGMHGEVVATG 130
Query: 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAI 200
+ KLFV L E+E+ IF P+GR+ +V++ + FV+++ ++ AL AI
Sbjct: 131 GDTKLFVSGLGPGTQEEELRTIFEPFGRINEVHVPGPHALYA----FVRFAEKEDALKAI 186
Query: 201 NALNGIYTMRGCDQPLTVRFADPK 224
+NG T+ G +PL V+ A+ +
Sbjct: 187 REVNGRVTVEGSQRPLEVKVAESR 210
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 136 ERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRD 194
+R+ + KLFV L E ++ +F YG VEDV+++RD QSRG FV++
Sbjct: 7 DRMESTSVKLFVRGLPVHYPESDLRAVFEEYGMVEDVFILRDRSTMQSRGMAFVRFRDIP 66
Query: 195 MALAAINALNG 205
+AAI ALNG
Sbjct: 67 SGMAAIKALNG 77
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAI 110
A +FV VP E+D+R F GN++ ++ DK TG +G FI Y ++ A RA+
Sbjct: 331 ANVFVFWVPDAWTEDDLRDHFSSFGNIVSAKVVVDKHTGLSRGYGFISYDNAQSAGRAV 389
Score = 45.8 bits (107), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 11/114 (9%)
Query: 19 LPQSLPVPQLSGQKRGFSGRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNV 78
+P S+ + Q ++ G G ++V KLFV + +EE++R +FE G +
Sbjct: 106 IPLSVSLAQGEAERLGMHG------EVVATGGDTKLFVSGLGPGTQEEELRTIFEPFGRI 159
Query: 79 IEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYAD 132
EV + G F+++A E+A +AIR ++ + T+ G P++V+ A+
Sbjct: 160 NEVHV-----PGPHALYAFVRFAEKEDALKAIREVNGRVTVEGSQRPLEVKVAE 208
>gi|270014670|gb|EFA11118.1| hypothetical protein TcasGA2_TC004718 [Tribolium castaneum]
Length = 350
Score = 90.1 bits (222), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 93/183 (50%), Gaps = 18/183 (9%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKK-----------TGQQQGCCFIKY 100
L V +P+T +E+IR LF G V LI+DK TGQ G F+ Y
Sbjct: 31 TNLIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKVTVPGVITSPLLTGQSLGYGFVNY 90
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVE 160
E+A++AI L+ L I+V YA E + L+V L K T++++E
Sbjct: 91 HRPEDAEKAINTLNG---LRLQNKTIKVSYARPSSEAIKGA--NLYVSGLPKNMTQQDLE 145
Query: 161 EIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+FSPYGR+ ++ D + S+G GF+++ R A AI LNG +G +P+TV+
Sbjct: 146 SLFSPYGRIITSRILCDNITGLSKGVGFIRFDQRLEAERAIQELNGTIP-KGSTEPITVK 204
Query: 220 FAD 222
FA+
Sbjct: 205 FAN 207
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 105/235 (44%), Gaps = 59/235 (25%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
PS + + G A L+V +PK ++D+ LF +G +I ++ D TG +G FI++
Sbjct: 120 PSSEAIKG---ANLYVSGLPKNMTQQDLESLFSPYGRIITSRILCDNITGLSKGVGFIRF 176
Query: 101 ATSEEADRAIRALHNQHTLP-GGVGPIQVRYAD-------------------GERERLGA 140
EA+RAI+ L+ T+P G PI V++A+ R G
Sbjct: 177 DQRLEAERAIQELNG--TIPKGSTEPITVKFANNPSNNNKAIPPLAAYLTPQATRRFAGP 234
Query: 141 VE------------------------------YKLFVGSLNKQATEKEVEEIFSPYGRVE 170
+ + +FV +L + E + ++F P+G V+
Sbjct: 235 IHHPTGRFRYSPLAGDLLANSMLPGNAMNGSGWCIFVYNLAPETEENVLWQLFGPFGAVQ 294
Query: 171 DVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224
V ++RD + + +G GFV ++ D A+ AI +LNG YT+ ++ L V F K
Sbjct: 295 SVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNG-YTLG--NRVLQVSFKTNK 346
>gi|344283287|ref|XP_003413403.1| PREDICTED: ELAV-like protein 3 [Loxodonta africana]
Length = 360
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 100/188 (53%), Gaps = 14/188 (7%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G G + D S L V +P+ +++ + LF G++ L++DK TGQ G
Sbjct: 29 GTNGATDD-----SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYG 83
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQAT 155
F+ Y+ +AD+AI L+ L I+V YA R ++ + L+V L K +
Sbjct: 84 FVNYSDPNDADKAINTLNG---LKLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMS 137
Query: 156 EKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQ 214
+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG + G +
Sbjct: 138 QKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAE 196
Query: 215 PLTVRFAD 222
P+TV+FA+
Sbjct: 197 PITVKFAN 204
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 125 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG 139
L+ Q L G PI V++A+ ++ G
Sbjct: 185 GLNGQKPL-GAAEPITVKFANNPSQKTG 211
Score = 46.2 bits (108), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L+ +A E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 204 NGIYTMRGCDQPLTVRFADPKRPR 227
NG R ++ L V F K+ +
Sbjct: 339 NG---YRLGERVLQVSFKTSKQHK 359
>gi|338727192|ref|XP_001916382.2| PREDICTED: LOW QUALITY PROTEIN: ELAV-like protein 3-like [Equus
caballus]
Length = 345
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 100/188 (53%), Gaps = 14/188 (7%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G G + D S L V +P+ +++ + LF G++ L++DK TGQ G
Sbjct: 32 GTNGATDD-----SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYG 86
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQAT 155
F+ Y+ +AD+AI L+ L I+V YA R ++ + L+V L K +
Sbjct: 87 FVNYSDPNDADKAINTLNG---LKLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMS 140
Query: 156 EKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQ 214
+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG + G +
Sbjct: 141 QKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAE 199
Query: 215 PLTVRFAD 222
P+TV+FA+
Sbjct: 200 PITVKFAN 207
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 128 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 187
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG 139
L+ Q L G PI V++A+ ++ G
Sbjct: 188 GLNGQKPL-GAAEPITVKFANNPSQKTG 214
>gi|391344304|ref|XP_003746441.1| PREDICTED: ELAV-like protein 4-like [Metaseiulus occidentalis]
Length = 394
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 90/172 (52%), Gaps = 8/172 (4%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
L V +P+T +E+IR LF G V LI+DK TGQ G F+ Y +E A++AI
Sbjct: 68 NLIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKVTGQSLGYGFVNYVCAEAAEKAINT 127
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
L+ L I+V YA E + L+V L K T++++E++F+PYG +
Sbjct: 128 LNG---LRLQNKTIKVSYARPSSEAIKGA--NLYVSGLPKSMTQQDLEQLFAPYGGIITS 182
Query: 173 YLMRDELKQ--SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D + S+G GFV++ R A AI L+ G + +TV+FA+
Sbjct: 183 RILCDNITAGLSKGVGFVRFDQRVEAERAIKHLHNTIP-EGATEAITVKFAN 233
Score = 46.2 bits (108), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L E + ++F P+G V+ V ++RD + + +G GFV ++ D A+ AI
Sbjct: 312 WCIFVYNLAPDTEENLLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQ 371
Query: 202 ALNGIYTMRGCDQPLTVRFADPK 224
LNG YT+ ++ L V F K
Sbjct: 372 TLNG-YTLG--NRVLQVSFKTNK 391
>gi|444525484|gb|ELV14031.1| ELAV-like protein 3 [Tupaia chinensis]
Length = 332
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 100/188 (53%), Gaps = 14/188 (7%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G G + D S L V +P+ +++ + LF G++ L++DK TGQ G
Sbjct: 21 GTNGATDD-----SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYG 75
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQAT 155
F+ Y+ +AD+AI L+ L I+V YA R ++ + L+V L K +
Sbjct: 76 FVNYSDPNDADKAISTLNG---LKLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMS 129
Query: 156 EKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQ 214
+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG + G +
Sbjct: 130 QKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAE 188
Query: 215 PLTVRFAD 222
P+TV+FA+
Sbjct: 189 PITVKFAN 196
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 117 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 176
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG 139
L+ Q L G PI V++A+ ++ G
Sbjct: 177 GLNGQKPL-GAAEPITVKFANNPSQKTG 203
Score = 43.5 bits (101), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L+ +A E + ++F P+G V +V ++RD + +G GFV ++ D A AI
Sbjct: 269 WCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIA 328
Query: 202 ALNG 205
+L+G
Sbjct: 329 SLHG 332
>gi|332028466|gb|EGI68509.1| Splicing factor 3B subunit 4 [Acromyrmex echinatior]
Length = 410
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 99/185 (53%), Gaps = 12/185 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + E + LF + G V+ V + KD+ T QG F+++ E+AD AI+
Sbjct: 13 ATIYVGGLDDKVTESLMWELFVQSGPVVNVHMPKDRVTQMHQGYGFVEFMGEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+ N L G PI+V A ++ L V +F+G+L+ + EK + + FS +G +
Sbjct: 73 IM-NMIKLYG--KPIRVNKASAHQKNLD-VGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 128
Query: 172 V-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+MRD E S+G F+ ++ D + A+I A+NG Y C++P++V +A D K
Sbjct: 129 TPKIMRDPETGNSKGFAFINFASFDASDASIEAMNGQYL---CNRPISVSYAFKRDAKGE 185
Query: 227 RPGDS 231
R G +
Sbjct: 186 RHGSA 190
>gi|395850849|ref|XP_003797986.1| PREDICTED: ELAV-like protein 3 isoform 2 [Otolemur garnettii]
gi|402904299|ref|XP_003914984.1| PREDICTED: ELAV-like protein 3 isoform 2 [Papio anubis]
Length = 359
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 100/188 (53%), Gaps = 14/188 (7%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G G + D S L V +P+ +++ + LF G++ L++DK TGQ G
Sbjct: 28 GTNGATDD-----SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYG 82
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQAT 155
F+ Y+ +AD+AI L+ L I+V YA R ++ + L+V L K +
Sbjct: 83 FVNYSDPNDADKAINTLNG---LKLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMS 136
Query: 156 EKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQ 214
+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG + G +
Sbjct: 137 QKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAE 195
Query: 215 PLTVRFAD 222
P+TV+FA+
Sbjct: 196 PITVKFAN 203
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 124 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 183
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG 139
L+ Q L G PI V++A+ ++ G
Sbjct: 184 GLNGQKPL-GAAEPITVKFANNPSQKTG 210
Score = 46.2 bits (108), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L+ +A E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 204 NGIYTMRGCDQPLTVRFADPKRPR 227
NG R ++ L V F K+ +
Sbjct: 338 NG---YRLGERVLQVSFKTSKQHK 358
>gi|12851808|dbj|BAB29173.1| unnamed protein product [Mus musculus]
Length = 371
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 92/173 (53%), Gaps = 9/173 (5%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ L I+V YA R ++ + L+V L K +KE+E++FS YGR+
Sbjct: 111 TLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMIQKELEQLFSQYGRII 164
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 165 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 216
>gi|221042398|dbj|BAH12876.1| unnamed protein product [Homo sapiens]
Length = 332
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 93/171 (54%), Gaps = 9/171 (5%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
L V +P+ +E+ R LF G + L++DK TGQ G F+ Y ++A++AI L
Sbjct: 14 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 73
Query: 114 HNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR+
Sbjct: 74 NG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 127
Query: 173 YLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 128 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFAN 177
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 98 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 157
Query: 112 ALHNQHTLPGGVGPIQVRYAD 132
L+ Q G PI V++A+
Sbjct: 158 GLNGQKP-SGATEPITVKFAN 177
Score = 46.2 bits (108), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L+ + E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 251 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 310
Query: 204 NGIYTMRGCDQPLTVRFADPK 224
NG R D+ L V F K
Sbjct: 311 NG---YRLGDRVLQVSFKTNK 328
>gi|410927510|ref|XP_003977185.1| PREDICTED: ELAV-like protein 1-like [Takifugu rubripes]
Length = 341
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 111/229 (48%), Gaps = 20/229 (8%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
L V +P+ +E++R LF G V LI+DK G G F+ Y T +A+RAI L
Sbjct: 37 LIVNYLPQNMSQEELRSLFSSIGEVESAKLIRDKIAGHSLGYGFVNYVTPSDAERAINTL 96
Query: 114 HNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVY 173
+ L I+V YA + + + L++ L K T+K+VE++FS +GR+ +
Sbjct: 97 NG---LRLQSKNIKVSYARPSSDTIK--DANLYISGLPKSMTQKDVEDMFSRFGRIINSR 151
Query: 174 LMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
++ D+ SRG F+++ R A A+N LNG G +P+TV+FA P ++
Sbjct: 152 VLVDQATGASRGVAFIRFDKRAEAEDAVNNLNG-QKPSGVVEPITVKFA----ANPNQTK 206
Query: 233 SGPTFGGPGFGPRFQPPSPRPPPNFGDPITDQIPQNAWHPMSPRNMGPL 281
+ F S R FG P+ Q + + PMS +MG +
Sbjct: 207 NTQV-----ISQLFHNQSRR----FGGPLHHQAQRFRFSPMSVDHMGGV 246
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 103/234 (44%), Gaps = 58/234 (24%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
PS D + A L++ +PK+ ++D+ +F G +I ++ D+ TG +G FI++
Sbjct: 113 PSSDTIKD---ANLYISGLPKSMTQKDVEDMFSRFGRIINSRVLVDQATGASRGVAFIRF 169
Query: 101 ATSEEADRAIRALHNQHTLPGG-VGPIQVRYA---------------------------- 131
EA+ A+ L+ Q P G V PI V++A
Sbjct: 170 DKRAEAEDAVNNLNGQK--PSGVVEPITVKFAANPNQTKNTQVISQLFHNQSRRFGGPLH 227
Query: 132 -DGERER-----------LGAVE--------YKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+R R +G V + +F+ +L ++A E + ++F P+G V +
Sbjct: 228 HQAQRFRFSPMSVDHMGGVGGVSVPTNSNNGWCIFIYNLGQEADETILWQMFGPFGAVTN 287
Query: 172 VYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224
V ++RD + +G GFV S+ + A AI +LNG R ++ L V F K
Sbjct: 288 VKVIRDFTTNKCKGFGFVTMSNYEDAAMAIASLNG---YRLGEKILQVSFKTSK 338
>gi|74138233|dbj|BAE28602.1| unnamed protein product [Mus musculus]
Length = 326
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 117/246 (47%), Gaps = 20/246 (8%)
Query: 42 SPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYA 101
+ D D L V +P+ +E++R LF G V LI+DK G G F+ Y
Sbjct: 10 AEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYV 69
Query: 102 TSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEE 161
T+++A+RAI L+ L I+V YA E + + L++ L + T+K+VE+
Sbjct: 70 TAKDAERAISTLNG---LRLQSKTIKVSYAHPSSEVIK--DANLYISGLPRTMTQKDVED 124
Query: 162 IFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220
+FS +GR+ + ++ D+ SRG F+++ R A AI + NG + G +P+TV+F
Sbjct: 125 MFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG-HKPPGSSEPITVKF 183
Query: 221 ADPKRPRPGDSRSGPTFGGPGFGPRFQPPSPRPPPNFGDPITDQIPQNAWHPMSPRNMGP 280
A P +++ + P+ R FG P+ Q + + PM +M
Sbjct: 184 A----ANPNQNKNMAL-----LSQLYHSPARR----FGGPVHHQAQRFRFSPMGVDHMSG 230
Query: 281 LSNPGI 286
+S +
Sbjct: 231 ISGVNV 236
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 95/222 (42%), Gaps = 53/222 (23%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L++ +P+T ++D+ +F G +I ++ D+ TG +G FI++ EA+ AI
Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165
Query: 112 ALHNQHTLPGGV--------------------------------GPI-----QVRYADGE 134
+ N H PG GP+ + R++
Sbjct: 166 SF-NGHKPPGSSEPITVKFAANPNQNKNMALLSQLYHSPARRFGGPVHHQAQRFRFSPMG 224
Query: 135 RERLGAVE-----------YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQS 182
+ + + + +F+ +L + A E + ++F P+G V +V ++RD +
Sbjct: 225 VDHMSGISGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKC 284
Query: 183 RGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224
+G GFV ++ + A AI +LNG R D+ L V F K
Sbjct: 285 KGFGFVTMTNYEEAAMAIASLNG---YRLGDKILQVSFKTNK 323
>gi|26354232|dbj|BAC40744.1| unnamed protein product [Mus musculus]
Length = 305
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 115/236 (48%), Gaps = 20/236 (8%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
L V +P+ +E++R LF G V LI+DK G G F+ Y T+++A+RAI L
Sbjct: 1 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTL 60
Query: 114 HNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVY 173
+ L I+V YA E + + L++ L + T+K+VE++FS +GR+ +
Sbjct: 61 NG---LRLQSKTIKVSYARPSSEVIK--DANLYISGLPRTMTQKDVEDMFSRFGRIINSR 115
Query: 174 LMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSR 232
++ D+ SRG F+++ R A AI + NG + G +P+TV+FA P ++
Sbjct: 116 VLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG-HKPPGSSEPITVKFA----ANPNQNK 170
Query: 233 SGPTFGGPGFGPRFQPPSPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRG 288
+ + P+ R FG P+ Q + + PM +M +S + G
Sbjct: 171 NMAL-----LSQLYHSPARR----FGGPVHHQAQRFRFSPMGVDHMSGISGVNVPG 217
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 94/222 (42%), Gaps = 53/222 (23%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L++ +P+T ++D+ +F G +I ++ D+ TG +G FI++ EA+ AI
Sbjct: 85 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 144
Query: 112 ALHNQHTLPGGVGPIQVRYA-----------------------------DGERERLG--A 140
+ N H PG PI V++A +R R
Sbjct: 145 SF-NGHKPPGSSEPITVKFAANPNQNKNMALLSQLYHSPARRFGGPVHHQAQRFRFSPMG 203
Query: 141 VEYKLFVGSLN-----------------KQATEKEVEEIFSPYGRVEDVYLMRD-ELKQS 182
V++ + +N + A E + ++F P+G V +V ++RD +
Sbjct: 204 VDHMSGISGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKC 263
Query: 183 RGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224
+G GFV ++ + A AI +LNG R D+ L V F K
Sbjct: 264 KGFGFVTMTNYEEAAMAIASLNG---YRLGDKILQVSFKTNK 302
>gi|410053240|ref|XP_003316137.2| PREDICTED: LOW QUALITY PROTEIN: ELAV-like protein 3 [Pan
troglodytes]
Length = 447
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 93/174 (53%), Gaps = 7/174 (4%)
Query: 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRA 109
S L V +P+ +++ + LF G++ L++DK TG G F+KY+ ++AD+A
Sbjct: 153 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGVSLGXRFVKYSDPKKADKA 212
Query: 110 IRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRV 169
I L L IQV YA + + L+V L K ++KE+E++FS YGR+
Sbjct: 213 INTLQG---LKLQTKTIQVSYARPSSASI--RDANLYVSGLPKTMSQKEMEQLFSQYGRI 267
Query: 170 EDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D++ SRG GF+++ R A AI LNG + G + +TV+FA+
Sbjct: 268 ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAESITVKFAN 320
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 99/207 (47%), Gaps = 38/207 (18%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 241 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 300
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAV------------------------------ 141
L+ Q L G I V++A+ + R A+
Sbjct: 301 GLNGQKPL-GAAESITVKFANNQVRRRAALLTPLSLIARFSPIAIDGMSGLAGVGLSGGA 359
Query: 142 ---EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMAL 197
+ +FV +L+ +A E + ++F P+G V +V ++RD + +G GFV ++ D A
Sbjct: 360 AGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAA 419
Query: 198 AAINALNGIYTMRGCDQPLTVRFADPK 224
AI +LNG R ++ L V F K
Sbjct: 420 MAIASLNG---YRLGERVLQVSFKTSK 443
>gi|350406084|ref|XP_003487648.1| PREDICTED: splicing factor 3B subunit 4-like [Bombus impatiens]
Length = 413
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 98/183 (53%), Gaps = 12/183 (6%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + E + LF + G V+ V + KD+ T QG F+++ E+AD AI+
Sbjct: 13 ATIYVGGLDDKVTESLMWELFVQSGPVVNVHMPKDRVTQMHQGYGFVEFMGEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+ N L G PI+V A ++ L V +F+G+L+ + EK + + FS +G +
Sbjct: 73 IM-NMIKLYG--KPIRVNKASAHQKNLD-VGANIFIGNLDPEVDEKLLYDTFSAFGVILQ 128
Query: 172 V-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+MRD E S+G F+ ++ D + A+I A+NG Y C++P++V +A D K
Sbjct: 129 TPKIMRDPETGNSKGFAFINFASFDASDASIEAMNGQYL---CNRPISVSYAFKRDAKGE 185
Query: 227 RPG 229
R G
Sbjct: 186 RHG 188
>gi|432114336|gb|ELK36264.1| CUGBP Elav-like family member 3 [Myotis davidii]
Length = 435
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 55/82 (67%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGE 134
LH Q TLPG PIQV+ AD E
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSE 89
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 135 RERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHR 193
R LG +E KLFVG L KQ T+++V ++F P+G +++ ++R S+GC FVK+
Sbjct: 165 RNGLGPLEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTH 224
Query: 194 DMALAAINALNGIYTM 209
A AAIN L+ T+
Sbjct: 225 AEAQAAINTLHSSRTL 240
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 58/98 (59%), Gaps = 9/98 (9%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINA 202
KLFVG + + EK+++ IF +GR+ ++ +++D+ +GC F+ Y RD AL A +A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 203 LNGIYTMRGCDQPLTVRFADPKRPRPGDSRSG--PTFG 238
L+ T+ G ++P+ V+ AD +SR G TFG
Sbjct: 68 LHEQKTLPGMNRPIQVKPAD------SESRGGRSCTFG 99
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K +ED+R +FE G + E +++ G +GC F+K+ T EA AI
Sbjct: 175 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPD-GTSKGCAFVKFQTHAEAQAAINT 233
Query: 113 LHNQHTLP 120
LH+ TLP
Sbjct: 234 LHSSRTLP 241
>gi|348549848|ref|XP_003460745.1| PREDICTED: CUGBP Elav-like family member 5-like [Cavia porcellus]
Length = 424
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 64/103 (62%), Gaps = 2/103 (1%)
Query: 125 PIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRG 184
PIQV+ AD E G + KLFVG LNKQ +E++V +F P+G +++ ++R S+G
Sbjct: 57 PIQVKPADSESR--GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKG 114
Query: 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
C FVK+S A AAI+AL+G TM G L V+FAD + R
Sbjct: 115 CAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKER 157
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K EED+ LF+ G + E +++ G +GC F+K+++ EA AI A
Sbjct: 74 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPD-GSSKGCAFVKFSSHTEAQAAIHA 132
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH T+PG + V++AD ++ER
Sbjct: 133 LHGSQTMPGASSSLVVKFADTDKER 157
>gi|27229298|ref|NP_758827.1| ELAV-like protein 3 [Rattus norvegicus]
gi|34328053|ref|NP_034617.1| ELAV-like protein 3 [Mus musculus]
gi|3913870|sp|Q60900.1|ELAV3_MOUSE RecName: Full=ELAV-like protein 3; AltName: Full=Hu-antigen C;
Short=HuC
gi|1146120|gb|AAC52999.1| mHuC-L [Mus musculus]
gi|26006109|dbj|BAC41352.1| HuC [Rattus norvegicus]
gi|30354162|gb|AAH52097.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C) [Mus musculus]
gi|148693297|gb|EDL25244.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C), isoform CRA_a [Mus musculus]
gi|149020436|gb|EDL78241.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C), isoform CRA_b [Rattus norvegicus]
Length = 367
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 99/188 (52%), Gaps = 14/188 (7%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G G + D S L V +P+ +++ + LF G++ L++DK TGQ G
Sbjct: 29 GTNGATDD-----SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYG 83
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQAT 155
F+ Y+ +AD+AI L+ L I+V YA R ++ + L+V L K +
Sbjct: 84 FVNYSDPNDADKAINTLNG---LKLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMS 137
Query: 156 EKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQ 214
+KE+E++FS YGR+ ++ D+ SRG GF+++ R A AI LNG + G +
Sbjct: 138 QKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAE 196
Query: 215 PLTVRFAD 222
P+TV+FA+
Sbjct: 197 PITVKFAN 204
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 125 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIK 184
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG 139
L+ Q L G PI V++A+ ++ G
Sbjct: 185 GLNGQKPL-GAAEPITVKFANNPSQKTG 211
Score = 46.6 bits (109), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAIN 201
+ +FV +L+ +A E + ++F P+G V +V ++RD + +G GFV ++ D A AI
Sbjct: 284 WCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIA 343
Query: 202 ALNGIYTMRGCDQPLTVRFADPKRPR 227
+LNG R ++ L V F K+ +
Sbjct: 344 SLNG---YRLGERVLQVSFKTSKQHK 366
>gi|18858615|ref|NP_571524.1| ELAV-like protein 3 [Danio rerio]
gi|1683635|gb|AAB36515.1| zHuC [Danio rerio]
Length = 345
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 94/171 (54%), Gaps = 9/171 (5%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
L V +P+ +E+ + LF G + L++DK TGQ G F+ Y +AD+AI L
Sbjct: 40 LIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTL 99
Query: 114 HNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
+ L I+V YA R ++ + L+V L K ++K++E++FS YGR+
Sbjct: 100 NG---LKLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMSQKDMEQLFSQYGRIITS 153
Query: 173 YLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ +++ SRG GF+++ R+ A AI LNG + G +P+TV+FA+
Sbjct: 154 RILVNQVTGISRGVGFIRFDKRNEAEEAIKGLNGQKPL-GAAEPITVKFAN 203
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 102/225 (45%), Gaps = 53/225 (23%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++D+ LF ++G +I ++ ++ TG +G FI++ EA+ AI+
Sbjct: 124 ANLYVSGLPKTMSQKDMEQLFSQYGRIITSRILVNQVTGISRGVGFIRFDKRNEAEEAIK 183
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG-----------AVEYK---------------- 144
L+ Q L G PI V++A+ ++ G A Y
Sbjct: 184 GLNGQKPL-GAAEPITVKFANNPSQKTGQALLTQLYQTAARRYTGPLHHQTQRFRFSPIT 242
Query: 145 ---------------------LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQS 182
+FV +L+ +A E + ++F P+G V +V ++RD +
Sbjct: 243 IDSMTSLAGVNLTGPTGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKC 302
Query: 183 RGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+G GFV ++ D A AI +LNG R D+ L V F K+ +
Sbjct: 303 KGFGFVTMTNYDEAAMAIASLNG---YRLGDRVLQVSFKTSKQHK 344
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.312 0.130 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,417,541,765
Number of Sequences: 23463169
Number of extensions: 610491493
Number of successful extensions: 3787473
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 17562
Number of HSP's successfully gapped in prelim test: 39421
Number of HSP's that attempted gapping in prelim test: 2582402
Number of HSP's gapped (non-prelim): 569099
length of query: 700
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 550
effective length of database: 8,839,720,017
effective search space: 4861846009350
effective search space used: 4861846009350
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 81 (35.8 bits)