Query 005357
Match_columns 700
No_of_seqs 519 out of 2889
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 22:11:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005357.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005357hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0144 RNA-binding protein CU 100.0 5.6E-47 1.2E-51 397.0 20.5 458 47-597 30-491 (510)
2 TIGR01659 sex-lethal sex-letha 100.0 3.6E-34 7.7E-39 309.3 29.5 180 43-228 99-279 (346)
3 KOG0148 Apoptosis-promoting RN 100.0 2E-29 4.3E-34 252.0 21.0 168 50-228 61-242 (321)
4 KOG0117 Heterogeneous nuclear 100.0 3.6E-28 7.9E-33 257.0 24.8 171 49-229 81-336 (506)
5 TIGR01645 half-pint poly-U bin 100.0 1.2E-28 2.5E-33 279.8 19.8 170 49-224 105-284 (612)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.9E-28 6.2E-33 264.7 20.3 170 50-225 2-172 (352)
7 TIGR01648 hnRNP-R-Q heterogene 100.0 4.1E-27 8.8E-32 266.9 28.3 169 48-227 55-310 (578)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 9.7E-28 2.1E-32 260.6 21.0 173 50-226 88-351 (352)
9 TIGR01628 PABP-1234 polyadenyl 100.0 2.4E-27 5.1E-32 273.6 25.3 176 48-227 175-367 (562)
10 TIGR01628 PABP-1234 polyadenyl 100.0 8.1E-28 1.8E-32 277.5 19.2 169 53-227 2-170 (562)
11 TIGR01622 SF-CC1 splicing fact 99.9 3.3E-26 7.1E-31 257.5 21.2 170 48-224 86-266 (457)
12 KOG0145 RNA-binding protein EL 99.9 6.8E-27 1.5E-31 232.2 13.5 172 48-225 38-210 (360)
13 KOG0131 Splicing factor 3b, su 99.9 3E-24 6.6E-29 204.3 13.1 173 48-227 6-180 (203)
14 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 1.2E-23 2.5E-28 238.4 19.5 164 50-225 1-175 (481)
15 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 1.7E-23 3.6E-28 237.2 19.8 165 48-224 272-480 (481)
16 TIGR01642 U2AF_lg U2 snRNP aux 99.9 3.5E-23 7.6E-28 235.9 21.9 170 49-224 293-502 (509)
17 KOG0109 RNA-binding protein LA 99.9 2.9E-24 6.2E-29 217.0 10.8 149 52-225 3-151 (346)
18 KOG0146 RNA-binding protein ET 99.9 2.9E-23 6.2E-28 207.1 12.2 175 50-228 18-369 (371)
19 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.3E-22 2.9E-27 231.2 18.7 165 47-224 171-375 (509)
20 KOG0145 RNA-binding protein EL 99.9 9.8E-23 2.1E-27 202.7 15.1 172 49-224 125-358 (360)
21 KOG4205 RNA-binding protein mu 99.9 3.6E-22 7.9E-27 210.7 15.9 175 50-230 5-182 (311)
22 KOG0127 Nucleolar protein fibr 99.9 1E-21 2.2E-26 212.2 15.4 169 52-226 6-198 (678)
23 TIGR01622 SF-CC1 splicing fact 99.9 2E-21 4.3E-26 218.7 18.5 165 51-224 186-448 (457)
24 KOG0144 RNA-binding protein CU 99.9 7E-22 1.5E-26 208.6 11.8 174 49-226 122-506 (510)
25 KOG0123 Polyadenylate-binding 99.9 2.7E-21 5.8E-26 210.5 15.8 158 52-230 2-159 (369)
26 KOG0124 Polypyrimidine tract-b 99.9 1.4E-21 3E-26 202.0 10.4 168 50-223 112-289 (544)
27 KOG0127 Nucleolar protein fibr 99.8 1.4E-20 2.9E-25 203.5 15.6 169 51-225 117-379 (678)
28 KOG0105 Alternative splicing f 99.8 5.5E-19 1.2E-23 168.5 15.4 161 49-222 4-188 (241)
29 KOG0148 Apoptosis-promoting RN 99.8 2.2E-19 4.8E-24 180.2 11.7 137 48-225 3-143 (321)
30 KOG0110 RNA-binding protein (R 99.8 2.2E-19 4.7E-24 200.2 12.4 169 51-225 515-694 (725)
31 KOG0123 Polyadenylate-binding 99.8 7.1E-19 1.5E-23 191.6 14.6 166 50-224 75-246 (369)
32 TIGR01645 half-pint poly-U bin 99.8 3.4E-18 7.3E-23 194.8 19.3 69 49-117 202-270 (612)
33 KOG1456 Heterogeneous nuclear 99.7 3.9E-16 8.6E-21 162.5 23.6 173 41-225 21-200 (494)
34 KOG0147 Transcriptional coacti 99.7 2.4E-18 5.1E-23 187.6 7.2 171 48-225 176-359 (549)
35 PLN03134 glycine-rich RNA-bind 99.7 1.6E-16 3.4E-21 151.8 14.0 86 139-227 31-117 (144)
36 KOG4212 RNA-binding protein hn 99.7 9.9E-16 2.1E-20 162.2 19.0 169 49-224 42-294 (608)
37 KOG1457 RNA binding protein (c 99.7 5.7E-16 1.2E-20 152.0 15.3 160 46-208 29-273 (284)
38 KOG0147 Transcriptional coacti 99.6 5.6E-16 1.2E-20 169.2 11.2 167 49-223 276-527 (549)
39 KOG4211 Splicing factor hnRNP- 99.6 1.1E-14 2.3E-19 157.5 20.5 163 49-222 8-180 (510)
40 KOG0106 Alternative splicing f 99.6 3.7E-16 8E-21 156.2 7.5 148 52-220 2-167 (216)
41 PLN03134 glycine-rich RNA-bind 99.6 1.8E-15 3.9E-20 144.5 10.4 83 48-133 31-113 (144)
42 KOG4206 Spliceosomal protein s 99.6 9.1E-15 2E-19 145.0 15.6 162 49-222 7-220 (221)
43 KOG0110 RNA-binding protein (R 99.5 3.1E-14 6.7E-19 159.4 13.3 163 48-222 382-596 (725)
44 KOG0122 Translation initiation 99.5 3.4E-14 7.3E-19 141.7 10.3 87 44-133 182-268 (270)
45 KOG0149 Predicted RNA-binding 99.5 3E-14 6.4E-19 141.6 8.4 80 48-129 9-88 (247)
46 KOG0120 Splicing factor U2AF, 99.5 1.1E-13 2.5E-18 153.1 13.8 208 11-224 248-492 (500)
47 KOG1548 Transcription elongati 99.5 2.7E-13 6E-18 140.9 15.5 167 48-224 131-352 (382)
48 KOG0124 Polypyrimidine tract-b 99.5 1.4E-13 3E-18 143.1 12.8 67 48-114 207-273 (544)
49 COG0724 RNA-binding proteins ( 99.5 1.6E-13 3.5E-18 140.2 13.0 148 51-201 115-285 (306)
50 TIGR01659 sex-lethal sex-letha 99.5 1.2E-13 2.6E-18 149.9 10.5 83 50-133 192-274 (346)
51 KOG0113 U1 small nuclear ribon 99.5 2.5E-13 5.4E-18 138.8 11.7 93 132-227 91-184 (335)
52 KOG0125 Ataxin 2-binding prote 99.5 7.4E-14 1.6E-18 144.1 7.8 83 138-224 92-174 (376)
53 KOG0122 Translation initiation 99.5 3.1E-13 6.8E-18 134.8 11.6 83 139-224 186-269 (270)
54 PF00076 RRM_1: RNA recognitio 99.4 2.8E-13 6E-18 111.7 8.5 64 54-118 1-64 (70)
55 KOG0105 Alternative splicing f 99.4 2.7E-13 5.8E-18 129.9 8.7 81 140-225 4-84 (241)
56 KOG0107 Alternative splicing f 99.4 2.9E-13 6.3E-18 129.0 8.7 79 141-226 9-87 (195)
57 KOG1456 Heterogeneous nuclear 99.4 8.9E-12 1.9E-16 130.4 20.2 171 47-224 283-491 (494)
58 KOG0129 Predicted RNA-binding 99.4 1.8E-12 3.9E-17 141.3 14.7 169 44-220 252-450 (520)
59 PF00076 RRM_1: RNA recognitio 99.4 5.7E-13 1.2E-17 109.8 8.1 70 145-217 1-70 (70)
60 KOG0121 Nuclear cap-binding pr 99.4 3.3E-13 7.2E-18 122.4 7.1 84 47-133 32-115 (153)
61 KOG0107 Alternative splicing f 99.4 5.4E-13 1.2E-17 127.2 8.0 79 49-135 8-86 (195)
62 KOG0149 Predicted RNA-binding 99.4 6E-13 1.3E-17 132.4 8.5 79 141-223 11-90 (247)
63 KOG4207 Predicted splicing fac 99.4 5.2E-13 1.1E-17 130.1 7.5 80 142-224 13-93 (256)
64 TIGR01648 hnRNP-R-Q heterogene 99.4 1.5E-12 3.2E-17 148.8 11.7 115 102-221 18-135 (578)
65 KOG4212 RNA-binding protein hn 99.4 5.7E-12 1.2E-16 134.0 14.8 73 142-221 536-608 (608)
66 KOG0113 U1 small nuclear ribon 99.4 1.8E-12 3.9E-17 132.6 9.4 84 47-131 97-180 (335)
67 PF14259 RRM_6: RNA recognitio 99.3 4.7E-12 1E-16 105.2 8.4 67 54-122 1-67 (70)
68 KOG1190 Polypyrimidine tract-b 99.3 1.8E-11 3.9E-16 129.6 14.5 159 51-223 297-490 (492)
69 KOG0108 mRNA cleavage and poly 99.3 2.4E-12 5.2E-17 142.0 7.9 82 52-136 19-100 (435)
70 KOG0114 Predicted RNA-binding 99.3 4.6E-12 9.9E-17 111.0 8.0 109 43-167 10-118 (124)
71 KOG1190 Polypyrimidine tract-b 99.3 4.8E-12 1E-16 133.9 9.7 166 48-224 25-228 (492)
72 PF14259 RRM_6: RNA recognitio 99.3 8.6E-12 1.9E-16 103.6 8.8 70 145-217 1-70 (70)
73 KOG0125 Ataxin 2-binding prote 99.3 4.9E-12 1.1E-16 130.8 8.4 83 46-133 91-173 (376)
74 KOG0132 RNA polymerase II C-te 99.3 9.5E-10 2.1E-14 124.5 26.3 106 50-164 420-528 (894)
75 PLN03213 repressor of silencin 99.3 6.7E-12 1.5E-16 135.0 8.5 79 48-133 7-87 (759)
76 PLN03120 nucleic acid binding 99.3 9.6E-12 2.1E-16 127.8 9.3 77 142-224 4-80 (260)
77 PLN03120 nucleic acid binding 99.3 1.1E-11 2.4E-16 127.3 9.6 76 51-133 4-79 (260)
78 KOG1365 RNA-binding protein Fu 99.3 2E-11 4.3E-16 128.2 10.2 170 47-224 157-362 (508)
79 KOG0121 Nuclear cap-binding pr 99.2 8.9E-12 1.9E-16 113.2 6.2 82 139-223 33-115 (153)
80 KOG4207 Predicted splicing fac 99.2 8.1E-12 1.7E-16 121.8 6.2 82 47-131 9-90 (256)
81 KOG0126 Predicted RNA-binding 99.2 7.2E-13 1.6E-17 126.8 -1.2 82 47-131 31-112 (219)
82 KOG0146 RNA-binding protein ET 99.2 1.2E-11 2.5E-16 124.6 6.9 103 124-228 3-105 (371)
83 smart00362 RRM_2 RNA recogniti 99.2 5E-11 1.1E-15 97.0 8.5 64 53-118 1-64 (72)
84 smart00362 RRM_2 RNA recogniti 99.2 5.2E-11 1.1E-15 96.9 8.4 72 144-219 1-72 (72)
85 PLN03213 repressor of silencin 99.2 4.1E-11 9E-16 129.0 8.8 79 140-224 8-88 (759)
86 KOG4211 Splicing factor hnRNP- 99.2 1.9E-09 4.2E-14 117.2 21.1 148 49-202 101-340 (510)
87 KOG0117 Heterogeneous nuclear 99.2 8.2E-11 1.8E-15 126.1 10.5 81 140-222 81-162 (506)
88 KOG0111 Cyclophilin-type pepti 99.2 2E-11 4.4E-16 119.9 4.9 86 141-229 9-95 (298)
89 smart00360 RRM RNA recognition 99.2 8.9E-11 1.9E-15 95.1 7.9 63 56-118 1-63 (71)
90 KOG0114 Predicted RNA-binding 99.2 9.1E-11 2E-15 103.0 7.6 81 140-225 16-96 (124)
91 PLN03121 nucleic acid binding 99.1 1.3E-10 2.7E-15 117.8 9.5 75 50-131 4-78 (243)
92 KOG4210 Nuclear localization s 99.1 7.4E-11 1.6E-15 124.7 7.4 176 49-229 86-269 (285)
93 COG0724 RNA-binding proteins ( 99.1 2.1E-10 4.6E-15 117.1 10.6 79 142-223 115-194 (306)
94 PLN03121 nucleic acid binding 99.1 1.7E-10 3.8E-15 116.8 9.3 76 142-223 5-80 (243)
95 KOG0130 RNA-binding protein RB 99.1 9.1E-11 2E-15 107.5 6.5 87 139-228 69-156 (170)
96 cd00590 RRM RRM (RNA recogniti 99.1 3.2E-10 6.9E-15 92.8 9.1 74 144-220 1-74 (74)
97 KOG0130 RNA-binding protein RB 99.1 1.6E-10 3.5E-15 105.9 7.3 84 48-134 69-152 (170)
98 smart00360 RRM RNA recognition 99.1 3.1E-10 6.6E-15 91.9 8.2 70 147-219 1-71 (71)
99 cd00590 RRM RRM (RNA recogniti 99.1 5.7E-10 1.2E-14 91.2 9.2 65 53-118 1-65 (74)
100 KOG0108 mRNA cleavage and poly 99.1 1.8E-10 3.8E-15 127.4 6.8 85 143-230 19-104 (435)
101 KOG0226 RNA-binding proteins [ 99.0 3.8E-10 8.2E-15 113.5 7.0 169 49-224 94-270 (290)
102 KOG0111 Cyclophilin-type pepti 99.0 2E-10 4.4E-15 112.9 4.8 86 49-137 8-93 (298)
103 KOG4454 RNA binding protein (R 99.0 1.7E-10 3.8E-15 113.5 4.1 140 48-207 6-149 (267)
104 KOG0128 RNA-binding protein SA 99.0 3.1E-11 6.8E-16 137.9 -1.8 150 50-224 666-815 (881)
105 PF13893 RRM_5: RNA recognitio 99.0 1.3E-09 2.8E-14 86.9 8.0 56 159-221 1-56 (56)
106 KOG0126 Predicted RNA-binding 99.0 5.8E-11 1.3E-15 113.9 0.3 81 141-224 34-115 (219)
107 KOG0120 Splicing factor U2AF, 99.0 5.7E-10 1.2E-14 124.1 7.2 165 48-225 172-370 (500)
108 KOG0112 Large RNA-binding prot 99.0 5E-10 1.1E-14 128.6 5.0 168 44-225 365-532 (975)
109 KOG0109 RNA-binding protein LA 99.0 6.7E-10 1.5E-14 113.5 5.4 72 143-224 3-74 (346)
110 KOG0116 RasGAP SH3 binding pro 98.9 4.2E-09 9.1E-14 115.9 11.2 82 143-228 289-371 (419)
111 smart00361 RRM_1 RNA recogniti 98.9 2.6E-09 5.7E-14 89.3 7.2 54 65-118 2-62 (70)
112 KOG0415 Predicted peptidyl pro 98.9 2.3E-09 4.9E-14 112.0 6.9 82 48-132 236-317 (479)
113 smart00361 RRM_1 RNA recogniti 98.9 5.1E-09 1.1E-13 87.6 7.2 61 156-219 2-70 (70)
114 KOG0132 RNA polymerase II C-te 98.9 1.2E-07 2.6E-12 107.9 20.2 82 139-228 418-499 (894)
115 KOG0131 Splicing factor 3b, su 98.8 3.2E-09 7E-14 102.2 5.6 79 141-222 8-87 (203)
116 KOG4208 Nucleolar RNA-binding 98.8 7.9E-09 1.7E-13 101.6 7.9 75 48-123 46-121 (214)
117 PF13893 RRM_5: RNA recognitio 98.8 9.7E-09 2.1E-13 81.8 6.6 56 68-131 1-56 (56)
118 KOG0153 Predicted RNA-binding 98.7 2.1E-08 4.6E-13 105.0 8.2 77 140-223 226-302 (377)
119 KOG4205 RNA-binding protein mu 98.7 2.6E-08 5.6E-13 106.0 9.0 117 50-170 96-215 (311)
120 KOG0415 Predicted peptidyl pro 98.7 1.4E-08 3.1E-13 106.1 5.6 82 139-223 236-318 (479)
121 KOG0226 RNA-binding proteins [ 98.7 1.8E-08 3.9E-13 101.6 5.2 81 48-131 187-267 (290)
122 KOG4206 Spliceosomal protein s 98.6 6.8E-08 1.5E-12 96.5 7.8 79 143-226 10-92 (221)
123 KOG0153 Predicted RNA-binding 98.6 1E-07 2.2E-12 100.1 8.4 83 43-133 220-302 (377)
124 KOG4661 Hsp27-ERE-TATA-binding 98.6 1.3E-07 2.8E-12 103.9 9.1 82 48-132 402-483 (940)
125 KOG4660 Protein Mei2, essentia 98.6 7.3E-08 1.6E-12 106.6 6.7 158 48-223 72-249 (549)
126 KOG1457 RNA binding protein (c 98.6 2.5E-07 5.5E-12 91.7 9.3 89 141-229 33-123 (284)
127 PF00397 WW: WW domain; Inter 98.5 3.2E-08 7E-13 69.4 1.8 28 559-586 3-31 (31)
128 KOG4208 Nucleolar RNA-binding 98.5 2.2E-07 4.8E-12 91.5 7.2 82 140-224 47-130 (214)
129 COG5104 PRP40 Splicing factor 98.5 3.4E-08 7.4E-13 105.7 0.2 35 558-592 14-48 (590)
130 smart00456 WW Domain with 2 co 98.5 9.8E-08 2.1E-12 67.3 2.4 29 559-587 3-31 (32)
131 KOG1365 RNA-binding protein Fu 98.4 1.6E-06 3.5E-11 91.9 12.2 153 48-204 57-227 (508)
132 KOG4661 Hsp27-ERE-TATA-binding 98.4 3.9E-07 8.5E-12 100.2 7.0 80 141-223 404-484 (940)
133 KOG0533 RRM motif-containing p 98.4 6.2E-07 1.3E-11 92.2 8.1 77 48-126 80-156 (243)
134 cd00201 WW Two conserved trypt 98.4 1.5E-07 3.3E-12 65.7 2.5 29 559-587 2-30 (31)
135 KOG0533 RRM motif-containing p 98.4 5.3E-07 1.1E-11 92.7 7.5 82 141-225 82-163 (243)
136 KOG4209 Splicing factor RNPS1, 98.4 1.1E-06 2.4E-11 90.4 9.6 82 139-224 98-180 (231)
137 PF04059 RRM_2: RNA recognitio 98.4 1.6E-06 3.4E-11 77.1 9.1 81 52-132 2-85 (97)
138 KOG2193 IGF-II mRNA-binding pr 98.4 7.5E-08 1.6E-12 102.8 0.8 155 52-224 2-157 (584)
139 KOG0106 Alternative splicing f 98.4 3.5E-07 7.6E-12 92.1 4.9 73 143-225 2-74 (216)
140 KOG4307 RNA binding protein RB 98.3 2.6E-05 5.7E-10 88.2 19.4 67 45-112 428-495 (944)
141 KOG4849 mRNA cleavage factor I 98.3 2.2E-05 4.8E-10 82.4 17.2 67 142-208 80-149 (498)
142 KOG4307 RNA binding protein RB 98.3 1.3E-06 2.8E-11 98.4 7.8 164 49-220 309-510 (944)
143 KOG0116 RasGAP SH3 binding pro 98.3 1.2E-06 2.6E-11 96.8 7.1 65 48-112 285-349 (419)
144 KOG4209 Splicing factor RNPS1, 98.1 2.9E-06 6.2E-11 87.3 5.4 72 46-118 96-167 (231)
145 KOG0151 Predicted splicing reg 98.1 5.9E-06 1.3E-10 93.5 8.1 83 48-133 171-256 (877)
146 KOG4660 Protein Mei2, essentia 98.0 2.5E-06 5.5E-11 94.7 3.1 72 139-217 72-143 (549)
147 KOG4454 RNA binding protein (R 98.0 2.6E-06 5.7E-11 84.5 2.9 79 140-222 7-85 (267)
148 KOG1548 Transcription elongati 98.0 2E-05 4.2E-10 83.1 9.1 81 141-224 133-221 (382)
149 KOG1855 Predicted RNA-binding 98.0 0.0001 2.2E-09 79.7 14.0 69 141-209 230-312 (484)
150 KOG4676 Splicing factor, argin 97.9 4.5E-06 9.8E-11 88.9 3.0 148 53-207 9-212 (479)
151 KOG0151 Predicted splicing reg 97.9 1.3E-05 2.9E-10 90.7 6.6 81 140-223 172-256 (877)
152 COG5104 PRP40 Splicing factor 97.9 2.2E-06 4.7E-11 92.2 -0.2 37 557-593 54-90 (590)
153 PF04059 RRM_2: RNA recognitio 97.8 9.5E-05 2.1E-09 65.8 8.1 82 143-224 2-87 (97)
154 PF11608 Limkain-b1: Limkain b 97.8 7.3E-05 1.6E-09 64.0 6.9 70 143-224 3-77 (90)
155 KOG1995 Conserved Zn-finger pr 97.7 6.5E-05 1.4E-09 79.9 7.2 82 141-225 65-155 (351)
156 KOG0128 RNA-binding protein SA 97.7 6.9E-06 1.5E-10 95.0 -0.9 155 50-208 570-734 (881)
157 KOG0115 RNA-binding protein p5 97.7 0.00017 3.6E-09 73.6 8.6 110 105-226 6-116 (275)
158 KOG1995 Conserved Zn-finger pr 97.6 0.00022 4.9E-09 75.9 9.7 85 45-132 60-152 (351)
159 PF08777 RRM_3: RNA binding mo 97.6 0.00011 2.3E-09 66.7 5.8 72 143-220 2-76 (105)
160 KOG4849 mRNA cleavage factor I 97.6 0.0066 1.4E-07 64.4 19.3 75 47-122 76-152 (498)
161 PF11608 Limkain-b1: Limkain b 97.5 0.00038 8.1E-09 59.8 7.8 70 51-133 2-76 (90)
162 PF08777 RRM_3: RNA binding mo 97.5 0.00026 5.6E-09 64.2 6.7 58 52-115 2-59 (105)
163 COG5175 MOT2 Transcriptional r 97.4 0.00027 5.8E-09 74.2 6.9 80 142-224 114-203 (480)
164 KOG0155 Transcription factor C 97.3 0.00013 2.7E-09 80.6 2.7 36 559-594 12-47 (617)
165 KOG2314 Translation initiation 97.2 0.00058 1.3E-08 76.1 6.8 73 49-122 56-134 (698)
166 KOG1996 mRNA splicing factor [ 97.1 0.00083 1.8E-08 69.6 6.5 68 155-225 299-368 (378)
167 KOG1855 Predicted RNA-binding 97.1 0.00045 9.8E-09 74.9 4.8 67 49-115 229-308 (484)
168 KOG2314 Translation initiation 97.1 0.00082 1.8E-08 75.0 6.7 77 142-220 58-140 (698)
169 PF14605 Nup35_RRM_2: Nup53/35 97.1 0.001 2.3E-08 52.6 5.6 52 52-110 2-53 (53)
170 KOG3259 Peptidyl-prolyl cis-tr 97.1 0.00022 4.8E-09 66.8 1.3 31 558-588 8-39 (163)
171 KOG4210 Nuclear localization s 97.0 0.00046 1E-08 73.4 3.5 80 49-132 182-262 (285)
172 COG5175 MOT2 Transcriptional r 97.0 0.0023 5.1E-08 67.4 8.4 112 49-163 112-241 (480)
173 KOG2416 Acinus (induces apopto 96.8 0.00083 1.8E-08 75.4 2.9 81 139-224 441-522 (718)
174 KOG0129 Predicted RNA-binding 96.5 0.0067 1.5E-07 67.6 7.4 65 48-112 367-432 (520)
175 KOG2202 U2 snRNP splicing fact 96.4 0.0015 3.3E-08 66.9 1.9 65 157-224 83-148 (260)
176 PF14605 Nup35_RRM_2: Nup53/35 96.4 0.0049 1.1E-07 48.8 4.3 52 143-200 2-53 (53)
177 KOG0155 Transcription factor C 96.2 0.003 6.4E-08 70.1 2.8 39 556-594 111-149 (617)
178 KOG0150 Spliceosomal protein F 96.0 0.0024 5.3E-08 66.7 1.2 33 558-590 150-182 (336)
179 KOG2416 Acinus (induces apopto 96.0 0.0058 1.3E-07 68.8 4.0 81 47-133 440-521 (718)
180 KOG3152 TBP-binding protein, a 95.8 0.0089 1.9E-07 61.3 3.8 69 50-118 73-153 (278)
181 PF05172 Nup35_RRM: Nup53/35/4 95.7 0.023 5E-07 51.0 6.1 79 50-132 5-90 (100)
182 PF08952 DUF1866: Domain of un 95.7 0.033 7.1E-07 53.1 7.2 57 157-224 51-107 (146)
183 PF05172 Nup35_RRM: Nup53/35/4 95.6 0.04 8.7E-07 49.5 7.2 77 141-222 5-90 (100)
184 PF10309 DUF2414: Protein of u 95.5 0.057 1.2E-06 44.1 6.7 54 52-113 6-62 (62)
185 KOG2202 U2 snRNP splicing fact 95.4 0.0075 1.6E-07 62.0 1.9 52 66-118 83-135 (260)
186 PF07576 BRAP2: BRCA1-associat 95.4 0.11 2.3E-06 47.6 9.3 66 51-118 13-79 (110)
187 KOG0921 Dosage compensation co 95.4 0.065 1.4E-06 63.6 9.6 9 254-262 1216-1224(1282)
188 KOG3152 TBP-binding protein, a 95.3 0.01 2.2E-07 60.9 2.6 68 141-208 73-153 (278)
189 KOG2135 Proteins containing th 95.3 0.029 6.4E-07 61.9 6.0 61 155-224 386-446 (526)
190 PF10567 Nab6_mRNP_bdg: RNA-re 95.0 0.48 1E-05 49.9 13.6 174 47-223 11-231 (309)
191 KOG0115 RNA-binding protein p5 94.9 0.031 6.7E-07 57.5 4.4 62 52-114 32-93 (275)
192 KOG2253 U1 snRNP complex, subu 94.8 0.0082 1.8E-07 68.7 0.1 71 48-128 37-107 (668)
193 KOG1996 mRNA splicing factor [ 94.7 0.061 1.3E-06 56.2 6.0 54 65-118 300-354 (378)
194 KOG2591 c-Mpl binding protein, 94.6 0.062 1.3E-06 60.5 6.2 81 133-220 166-248 (684)
195 PRK11634 ATP-dependent RNA hel 94.4 0.37 8.1E-06 57.1 12.7 64 151-225 496-564 (629)
196 KOG0112 Large RNA-binding prot 94.4 0.049 1.1E-06 64.4 5.1 79 48-133 452-530 (975)
197 PF10309 DUF2414: Protein of u 94.3 0.098 2.1E-06 42.8 5.3 55 142-203 5-62 (62)
198 KOG0804 Cytoplasmic Zn-finger 94.3 0.18 3.9E-06 55.7 8.7 70 48-119 71-141 (493)
199 KOG2193 IGF-II mRNA-binding pr 94.0 0.032 7E-07 60.7 2.5 78 143-227 2-79 (584)
200 KOG2068 MOT2 transcription fac 93.9 0.03 6.4E-07 59.8 2.0 80 142-224 77-163 (327)
201 KOG4676 Splicing factor, argin 93.9 0.055 1.2E-06 58.5 3.9 75 143-221 8-86 (479)
202 PF03467 Smg4_UPF3: Smg-4/UPF3 93.6 0.08 1.7E-06 52.5 4.2 75 48-122 4-84 (176)
203 PF15023 DUF4523: Protein of u 93.5 0.23 4.9E-06 47.1 6.8 73 140-222 84-160 (166)
204 KOG2591 c-Mpl binding protein, 93.5 0.18 3.9E-06 56.9 7.1 60 49-115 173-234 (684)
205 PF07576 BRAP2: BRCA1-associat 93.2 0.67 1.4E-05 42.4 9.3 77 143-220 14-91 (110)
206 PF08675 RNA_bind: RNA binding 93.2 0.29 6.3E-06 42.3 6.4 53 54-114 11-63 (87)
207 KOG2068 MOT2 transcription fac 92.9 0.091 2E-06 56.2 3.7 78 50-131 76-160 (327)
208 KOG2318 Uncharacterized conser 92.9 0.54 1.2E-05 53.5 9.8 130 48-223 171-307 (650)
209 PF08675 RNA_bind: RNA binding 92.6 0.35 7.5E-06 41.9 6.0 55 143-205 10-64 (87)
210 PF03467 Smg4_UPF3: Smg-4/UPF3 92.4 0.23 5.1E-06 49.2 5.6 85 141-225 6-99 (176)
211 PF15023 DUF4523: Protein of u 92.4 0.39 8.5E-06 45.5 6.6 62 47-115 82-147 (166)
212 PF11767 SET_assoc: Histone ly 91.4 0.49 1.1E-05 39.3 5.5 50 61-119 10-59 (66)
213 KOG0804 Cytoplasmic Zn-finger 91.3 0.53 1.1E-05 52.2 7.2 79 142-221 74-153 (493)
214 PF03880 DbpA: DbpA RNA bindin 91.1 0.79 1.7E-05 38.7 6.7 60 151-221 10-74 (74)
215 PF07292 NID: Nmi/IFP 35 domai 91.1 0.17 3.6E-06 44.4 2.5 69 96-164 1-74 (88)
216 PF04847 Calcipressin: Calcipr 90.9 0.41 8.8E-06 47.9 5.4 62 155-224 8-71 (184)
217 KOG4285 Mitotic phosphoprotein 90.8 1.2 2.5E-05 47.2 8.9 63 51-122 197-259 (350)
218 KOG4574 RNA-binding protein (c 90.0 0.2 4.4E-06 59.0 2.8 74 145-224 301-374 (1007)
219 KOG2891 Surface glycoprotein [ 88.5 0.43 9.4E-06 49.6 3.6 156 62-224 48-268 (445)
220 PF11767 SET_assoc: Histone ly 88.2 1.4 3E-05 36.6 5.7 49 153-209 11-59 (66)
221 KOG4574 RNA-binding protein (c 87.2 0.35 7.6E-06 57.1 2.3 73 53-132 300-372 (1007)
222 PF08952 DUF1866: Domain of un 85.3 2.2 4.8E-05 40.9 6.2 69 50-128 26-103 (146)
223 COG5638 Uncharacterized conser 84.5 4.6 0.0001 44.3 8.9 39 48-86 143-186 (622)
224 PF14111 DUF4283: Domain of un 84.2 1.3 2.8E-05 42.1 4.3 114 54-176 18-139 (153)
225 PF04847 Calcipressin: Calcipr 83.5 1.9 4.2E-05 43.1 5.3 60 64-132 8-69 (184)
226 KOG2135 Proteins containing th 83.0 0.74 1.6E-05 51.3 2.2 78 46-133 367-445 (526)
227 KOG4410 5-formyltetrahydrofola 82.9 11 0.00024 39.7 10.5 54 46-104 325-378 (396)
228 KOG4285 Mitotic phosphoprotein 81.6 3.6 7.9E-05 43.6 6.5 78 142-228 197-274 (350)
229 KOG2253 U1 snRNP complex, subu 80.6 0.82 1.8E-05 52.9 1.6 70 140-220 38-107 (668)
230 KOG0152 Spliceosomal protein F 79.9 0.39 8.4E-06 54.6 -1.3 37 556-592 123-159 (463)
231 PF03880 DbpA: DbpA RNA bindin 77.8 6.6 0.00014 33.0 5.9 57 61-129 11-72 (74)
232 COG5193 LHP1 La protein, small 73.4 1.5 3.3E-05 48.1 1.0 63 50-112 173-245 (438)
233 KOG3973 Uncharacterized conser 71.3 22 0.00048 38.5 9.0 8 269-276 422-429 (465)
234 COG5594 Uncharacterized integr 70.4 2.7 5.9E-05 50.2 2.3 29 48-76 205-234 (827)
235 PF10567 Nab6_mRNP_bdg: RNA-re 69.1 9.4 0.0002 40.5 5.7 60 142-201 15-82 (309)
236 KOG4410 5-formyltetrahydrofola 66.9 8.3 0.00018 40.6 4.7 48 143-194 331-378 (396)
237 KOG4483 Uncharacterized conser 64.5 20 0.00043 39.6 7.1 57 140-202 389-446 (528)
238 KOG4213 RNA-binding protein La 64.2 2.8 6E-05 41.3 0.6 59 142-204 111-171 (205)
239 KOG4483 Uncharacterized conser 63.3 17 0.00038 40.0 6.4 57 49-112 389-446 (528)
240 KOG2236 Uncharacterized conser 61.6 53 0.0011 37.2 9.9 9 187-195 318-326 (483)
241 TIGR02542 B_forsyth_147 Bacter 59.9 17 0.00038 33.3 4.8 110 59-193 11-129 (145)
242 PRK10590 ATP-dependent RNA hel 56.3 2.8E+02 0.006 31.5 15.2 16 97-112 223-238 (456)
243 KOG3424 40S ribosomal protein 56.1 24 0.00052 32.6 5.1 48 61-109 33-85 (132)
244 KOG3671 Actin regulatory prote 55.7 53 0.0012 37.4 8.7 51 154-208 90-140 (569)
245 KOG4019 Calcineurin-mediated s 54.9 7.3 0.00016 38.6 1.8 60 157-224 30-90 (193)
246 PRK14548 50S ribosomal protein 54.8 20 0.00043 31.3 4.3 56 145-202 23-80 (84)
247 COG4874 Uncharacterized protei 54.0 30 0.00064 36.0 5.9 123 49-178 156-299 (318)
248 TIGR03636 L23_arch archaeal ri 51.9 25 0.00054 30.2 4.3 57 144-202 15-73 (77)
249 PF03468 XS: XS domain; Inter 50.7 12 0.00025 34.7 2.3 37 154-192 29-65 (116)
250 PF03468 XS: XS domain; Inter 50.0 19 0.00041 33.3 3.6 56 53-111 10-75 (116)
251 PF12905 Glyco_hydro_101: Endo 48.7 4.9 0.00011 44.7 -0.5 25 567-591 381-405 (425)
252 PF15513 DUF4651: Domain of un 48.5 27 0.00059 28.6 3.8 23 156-178 8-30 (62)
253 COG0445 GidA Flavin-dependent 48.4 45 0.00097 38.9 6.9 83 95-177 238-336 (621)
254 KOG4213 RNA-binding protein La 48.4 21 0.00046 35.3 3.8 62 48-113 108-170 (205)
255 KOG2295 C2H2 Zn-finger protein 48.1 7.1 0.00015 44.6 0.6 67 142-208 231-298 (648)
256 KOG1295 Nonsense-mediated deca 47.1 23 0.0005 39.0 4.2 75 49-123 5-82 (376)
257 PRK14548 50S ribosomal protein 47.0 56 0.0012 28.5 5.8 57 54-113 23-81 (84)
258 PF08002 DUF1697: Protein of u 43.5 1.4E+02 0.003 28.3 8.5 115 53-175 5-132 (137)
259 PRK01178 rps24e 30S ribosomal 42.2 50 0.0011 29.7 4.9 48 61-109 29-81 (99)
260 PF00403 HMA: Heavy-metal-asso 42.1 97 0.0021 24.4 6.3 54 144-202 1-58 (62)
261 COG0079 HisC Histidinol-phosph 41.9 56 0.0012 36.1 6.4 51 50-111 145-199 (356)
262 TIGR03636 L23_arch archaeal ri 41.6 80 0.0017 27.1 5.9 58 53-113 15-74 (77)
263 PRK11901 hypothetical protein; 41.4 81 0.0017 34.3 7.1 61 49-114 243-305 (327)
264 PF07530 PRE_C2HC: Associated 40.5 29 0.00063 28.9 3.0 45 66-110 2-47 (68)
265 KOG2854 Possible pfkB family c 40.4 98 0.0021 33.8 7.6 41 50-90 80-120 (343)
266 PRK11895 ilvH acetolactate syn 38.9 3.1E+02 0.0067 26.9 10.3 50 64-114 15-65 (161)
267 KOG2295 C2H2 Zn-finger protein 38.9 5.6 0.00012 45.4 -2.0 67 49-115 229-295 (648)
268 COG4747 ACT domain-containing 38.0 3.4E+02 0.0074 25.4 13.0 120 53-204 7-130 (142)
269 TIGR00119 acolac_sm acetolacta 37.8 3.6E+02 0.0078 26.3 10.5 51 63-114 13-64 (157)
270 PF01282 Ribosomal_S24e: Ribos 37.8 1.7E+02 0.0037 25.4 7.4 48 61-109 11-63 (84)
271 PF01071 GARS_A: Phosphoribosy 37.0 2.9E+02 0.0062 28.0 10.0 48 64-115 25-72 (194)
272 PF00403 HMA: Heavy-metal-asso 36.5 1.9E+02 0.0042 22.6 7.2 55 53-113 1-59 (62)
273 cd04908 ACT_Bt0572_1 N-termina 34.7 1.8E+02 0.0039 23.3 6.8 45 155-202 14-59 (66)
274 KOG1295 Nonsense-mediated deca 34.1 45 0.00097 36.8 3.9 72 142-213 7-82 (376)
275 COG2608 CopZ Copper chaperone 33.8 96 0.0021 25.8 5.1 45 143-192 4-48 (71)
276 PRK07400 30S ribosomal protein 33.7 1.2E+02 0.0027 32.9 7.3 36 62-102 12-53 (318)
277 COG2061 ACT-domain-containing 33.5 4.7E+02 0.01 25.6 11.8 123 72-205 26-153 (170)
278 PTZ00071 40S ribosomal protein 33.4 73 0.0016 30.2 4.7 48 61-109 34-87 (132)
279 KOG2891 Surface glycoprotein [ 33.3 41 0.0009 35.4 3.3 37 49-85 147-195 (445)
280 PF08544 GHMP_kinases_C: GHMP 33.2 1.3E+02 0.0028 25.0 6.0 44 66-114 37-80 (85)
281 smart00564 PQQ beta-propeller 32.8 21 0.00045 24.4 0.8 21 565-585 12-32 (33)
282 KOG3209 WW domain-containing p 31.4 2.6E+02 0.0056 33.7 9.5 147 1-175 660-835 (984)
283 KOG4019 Calcineurin-mediated s 30.9 44 0.00096 33.3 2.9 74 51-132 10-88 (193)
284 KOG4008 rRNA processing protei 30.5 37 0.00081 35.1 2.4 36 46-81 35-70 (261)
285 COG0151 PurD Phosphoribosylami 30.4 6.7E+02 0.015 28.5 12.3 136 63-205 125-303 (428)
286 cd06301 PBP1_rhizopine_binding 29.7 5.6E+02 0.012 25.8 11.3 22 93-114 96-117 (272)
287 PF01071 GARS_A: Phosphoribosy 29.3 94 0.002 31.4 5.1 63 155-220 25-87 (194)
288 PTZ00191 60S ribosomal protein 29.3 79 0.0017 30.4 4.3 55 144-200 83-139 (145)
289 PLN02441 cytokinin dehydrogena 29.2 1.3E+02 0.0028 35.2 6.9 49 66-115 215-267 (525)
290 smart00115 CASc Caspase, inter 28.5 3.6E+02 0.0078 27.9 9.5 91 50-164 8-107 (241)
291 PF02714 DUF221: Domain of unk 28.3 69 0.0015 34.4 4.3 34 186-224 1-34 (325)
292 cd04908 ACT_Bt0572_1 N-termina 28.1 3.1E+02 0.0067 21.9 8.2 46 63-112 13-59 (66)
293 cd04889 ACT_PDH-BS-like C-term 28.0 1.8E+02 0.0039 22.3 5.6 43 156-200 12-55 (56)
294 COG3048 DsdA D-serine dehydrat 27.2 1E+02 0.0022 33.3 5.0 28 141-171 240-267 (443)
295 CHL00123 rps6 ribosomal protei 26.8 1.7E+02 0.0036 26.1 5.7 60 51-112 8-81 (97)
296 PF03439 Spt5-NGN: Early trans 26.8 78 0.0017 27.3 3.5 34 77-115 33-66 (84)
297 PRK10629 EnvZ/OmpR regulon mod 26.2 2.2E+02 0.0048 26.8 6.6 59 154-222 50-109 (127)
298 COG1691 NCAIR mutase (PurE)-re 25.7 2.2E+02 0.0047 29.7 6.8 57 56-113 12-69 (254)
299 cd06313 PBP1_ABC_sugar_binding 25.4 6.3E+02 0.014 25.8 10.8 22 94-115 97-118 (272)
300 PRK10905 cell division protein 25.1 1.1E+02 0.0024 33.2 4.9 61 50-114 246-307 (328)
301 PF07530 PRE_C2HC: Associated 24.9 86 0.0019 26.1 3.3 61 157-223 2-64 (68)
302 COG0018 ArgS Arginyl-tRNA synt 24.9 3.1E+02 0.0068 32.5 9.0 101 64-177 59-165 (577)
303 cd04904 ACT_AAAH ACT domain of 24.5 2.3E+02 0.0049 23.6 5.9 52 154-205 12-65 (74)
304 KOG0037 Ca2+-binding protein, 24.3 30 0.00065 35.4 0.5 11 63-73 74-84 (221)
305 COG5353 Uncharacterized protei 23.9 2.7E+02 0.0058 27.0 6.6 58 50-107 86-156 (161)
306 cd04878 ACT_AHAS N-terminal AC 23.8 3.5E+02 0.0076 21.0 7.8 60 53-114 2-63 (72)
307 KOG2044 5'-3' exonuclease HKE1 23.6 1.4E+03 0.03 28.3 13.6 59 93-166 631-689 (931)
308 KOG4365 Uncharacterized conser 23.5 19 0.00041 40.2 -1.1 67 51-118 3-69 (572)
309 PTZ00191 60S ribosomal protein 23.2 2E+02 0.0043 27.8 5.7 56 54-112 84-141 (145)
310 PRK05192 tRNA uridine 5-carbox 23.1 1.2E+02 0.0026 36.2 5.1 83 95-177 238-336 (618)
311 PF13291 ACT_4: ACT domain; PD 23.1 3.6E+02 0.0078 22.3 7.0 64 52-115 7-71 (80)
312 PF01842 ACT: ACT domain; Int 22.9 2.6E+02 0.0056 21.6 5.8 57 54-113 3-61 (66)
313 smart00833 CobW_C Cobalamin sy 22.9 2.7E+02 0.0059 23.5 6.3 23 59-81 8-31 (92)
314 PRK04204 RNA 3'-terminal-phosp 22.9 3.9E+02 0.0084 29.5 8.8 118 51-190 113-242 (343)
315 PRK11901 hypothetical protein; 22.8 92 0.002 33.9 3.8 59 143-206 246-307 (327)
316 KOG1175 Acyl-CoA synthetase [L 22.7 99 0.0022 36.8 4.4 90 62-165 507-598 (626)
317 PF02998 Lentiviral_Tat: Lenti 22.6 54 0.0012 28.1 1.6 16 683-698 54-69 (86)
318 KOG1891 Proline binding protei 22.5 57 0.0012 33.5 2.1 33 556-588 93-125 (271)
319 COG2004 RPS24A Ribosomal prote 22.4 1.8E+02 0.0039 26.6 5.0 47 61-108 30-81 (107)
320 KOG1232 Proteins containing th 22.4 52 0.0011 36.5 1.9 120 57-177 230-367 (511)
321 PF15513 DUF4651: Domain of un 22.4 1.5E+02 0.0033 24.4 4.1 19 65-83 8-26 (62)
322 PRK08559 nusG transcription an 22.3 1.6E+02 0.0036 28.3 5.2 31 78-113 36-66 (153)
323 PF08734 GYD: GYD domain; Int 22.0 2.6E+02 0.0057 24.5 6.0 47 156-205 22-69 (91)
324 PRK01438 murD UDP-N-acetylmura 22.0 2.6E+02 0.0056 31.8 7.7 47 62-113 316-366 (480)
325 COG5193 LHP1 La protein, small 22.0 51 0.0011 36.6 1.7 60 142-201 174-244 (438)
326 cd04904 ACT_AAAH ACT domain of 21.9 4.6E+02 0.01 21.7 7.4 52 63-115 12-65 (74)
327 cd04880 ACT_AAAH-PDT-like ACT 21.8 4.4E+02 0.0096 21.5 7.3 52 63-115 11-66 (75)
328 TIGR03399 RNA_3prim_cycl RNA 3 21.8 3.7E+02 0.0081 29.4 8.4 119 51-190 111-239 (326)
329 KOG1177 Long chain fatty acid 21.6 5.4E+02 0.012 29.9 9.6 88 61-166 492-588 (596)
330 cd06314 PBP1_tmGBP Periplasmic 21.5 8.3E+02 0.018 24.7 10.8 56 53-114 58-114 (271)
331 PF14893 PNMA: PNMA 21.5 87 0.0019 34.3 3.4 27 48-74 15-41 (331)
332 PF09869 DUF2096: Uncharacteri 21.4 1.9E+02 0.0042 28.4 5.3 47 149-204 118-164 (169)
333 PF14026 DUF4242: Protein of u 21.4 5.1E+02 0.011 22.0 8.1 57 54-112 3-66 (77)
334 PLN03138 Protein TOC75; Provis 21.3 2.1E+02 0.0045 35.2 6.7 11 153-163 251-261 (796)
335 PF14893 PNMA: PNMA 21.1 92 0.002 34.1 3.5 75 142-224 18-97 (331)
336 cd00187 TOP4c DNA Topoisomeras 21.0 2.9E+02 0.0063 31.6 7.6 61 51-113 225-289 (445)
337 smart00596 PRE_C2HC PRE_C2HC d 21.0 1E+02 0.0022 25.9 2.9 43 66-108 2-45 (69)
338 KOG3973 Uncharacterized conser 20.9 5.5E+02 0.012 28.3 9.0 14 54-67 152-165 (465)
339 PRK11230 glycolate oxidase sub 20.8 2.3E+02 0.0049 32.9 6.8 49 156-204 203-255 (499)
340 PRK10905 cell division protein 20.8 1.2E+02 0.0027 32.9 4.3 60 143-206 248-309 (328)
341 PF02714 DUF221: Domain of unk 20.8 1.4E+02 0.0031 32.0 5.0 20 96-115 1-20 (325)
342 PF04278 Tic22: Tic22-like fam 20.5 6.8E+02 0.015 26.6 9.9 139 61-206 61-224 (274)
343 COG0424 Maf Nucleotide-binding 20.3 2.5E+02 0.0054 28.4 6.1 65 96-168 80-145 (193)
344 cd02568 PseudoU_synth_PUS1_PUS 20.2 1.6E+02 0.0034 30.7 5.0 54 62-115 21-91 (245)
345 cd04889 ACT_PDH-BS-like C-term 20.0 4E+02 0.0087 20.2 6.6 44 64-110 11-55 (56)
No 1
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=5.6e-47 Score=397.05 Aligned_cols=458 Identities=35% Similarity=0.450 Sum_probs=332.5
Q ss_pred CCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccc
Q 005357 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPI 126 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l 126 (700)
.+.+..+||||-||+.++|+||+++|++||.|.+|.|++||.|+.++|||||+|.+.+||.+|+.+||+.+.+.|....|
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccccccccCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCc
Q 005357 127 QVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGI 206 (700)
Q Consensus 127 ~V~~a~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~ 206 (700)
.|++++.++++. ..+++|||+-|+..++|+||+++|++||.|++|.|++|..+.+||||||.|+++|.|..||++|||.
T Consensus 110 qvk~Ad~E~er~-~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~ 188 (510)
T KOG0144|consen 110 QVKYADGERERI-VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGT 188 (510)
T ss_pred eecccchhhhcc-ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccc
Confidence 999999998886 6688999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCccceEEEecCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 005357 207 YTMRGCDQPLTVRFADPKRPRPGDSRSGPTFG---GPGFGPRFQPPSPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSN 283 (700)
Q Consensus 207 ~~~~g~gr~L~V~~a~~k~~r~~~~~~g~~~g---ggG~g~~~~~~~~r~~~~~g~p~g~~~P~~~~~p~~~r~~gP~~~ 283 (700)
..++||+.+|.|+|+++++++..++...-.-. .-+.+..+. ....++. -..+|... .-.-.+..+
T Consensus 189 ~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~-----n~~~~~~------l~~~~~~~-~Qq~~~sqn 256 (510)
T KOG0144|consen 189 QTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQ-----NLASLGA------LSNGYQGP-QQQTQQSQN 256 (510)
T ss_pred eeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCcc-----chhhhhc------cCcccCch-hhhccccCC
Confidence 99999999999999999988876553110000 000000000 0000000 00000000 000000011
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CcC
Q 005357 284 PGIRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQAPSLGQQISPLQKPLQSPQHMPP-LQL 362 (700)
Q Consensus 284 ~~~~G~g~~~p~~~gg~~~p~~~ggpggg~~~~~~~~~~~~~~qq~~~~~~~~~~~~~~~~~~~q~p~~~~q~~~~-~q~ 362 (700)
.+..| |--.++++ .+...+ +....+..+-+.+++..+.|++|. .|.
T Consensus 257 ~g~l~---------------------g~~~L~~l-----~a~~~q-------q~~~~~~~~ta~q~~~~s~q~~pl~~qt 303 (510)
T KOG0144|consen 257 VGTLG---------------------GLPPLGPL-----NATQLQ-------QAAALAAAATAAQKTASSTQGLPLRTQT 303 (510)
T ss_pred Ccccc---------------------cccCCCCc-----chhHHH-------HHHHhhhhcccccCCCCCcccCcccccc
Confidence 10000 11122222 122222 444556778899999999998844 333
Q ss_pred CCCCCCCccccccchhhhcccCCccccCCCCcccccccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 005357 363 HPQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQ 442 (700)
Q Consensus 363 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qq~~~~~~~~~~~q~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 442 (700)
..+. ...+.+....++.+++.++-...++-.-...+.++.|.+ ....| .-..-
T Consensus 304 s~~~------------------------~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n-~~~~~--a~a~~ 356 (510)
T KOG0144|consen 304 SFPG------------------------SQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYN-LAGGM--AGAGT 356 (510)
T ss_pred CCcc------------------------ccCCCccccCccccCcccccchhhhhHhhcCCCCchhcc-ccccc--ccccc
Confidence 2221 122344556788888888888887777788999999888 46666 23455
Q ss_pred CCCCCccccccCCCCCCchhhhhhcchhhhhhhhhccCcHHHHHHHHHHHHhcCCCCCCCCCccCCCCccccCCCCCCCC
Q 005357 443 QLPAPVQQQLHQPYQQSPSQLAQMLSQQTQTLQATFQSSQQAFSQLQQQLQLMQPSNQNLPLQQGSQGTKQQSQWAGIAP 522 (700)
Q Consensus 443 ~~~~~~qqq~~~~~q~~~~~~~q~~~qq~q~~~~~~~s~~~~~~q~~~q~~~~q~~~q~~~~~~~~~~~~~~~~~~~~~p 522 (700)
..++..+.+.++.+..+|.- .+.+.+++|..+..++++..++..|..|.+.+++.+.....+...+-+.. -+-..-|
T Consensus 357 ~sp~aa~~~~lq~~~ltp~~-~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGan--lfiyhlP 433 (510)
T KOG0144|consen 357 TSPVAASLANLQQIGLTPFA-GAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGAN--LFIYHLP 433 (510)
T ss_pred cCcccccccccccccCCChh-hhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccc--eeeeeCc
Confidence 66667778888899999888 77778899999999999999999999999988887777765554332222 0111111
Q ss_pred CccCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCceeeeCCCCCcccccCCcCcccccCChhhhHHHHHhh
Q 005357 523 QTVASAPASAPAADLPVSTSIGPAAPVSSQTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQQQQ 597 (700)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~~~~~~~~~~ 597 (700)
.-+--.. ......+.-.-.|.|+++...+|-.|||+-+|.|+.|++++++...+-.+.
T Consensus 434 qefgdq~-----------------l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQi 491 (510)
T KOG0144|consen 434 QEFGDQD-----------------LIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQI 491 (510)
T ss_pred hhhhhHH-----------------HHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhh
Confidence 1110000 000011111235779999999999999999999999999999988876553
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=3.6e-34 Score=309.29 Aligned_cols=180 Identities=28% Similarity=0.510 Sum_probs=157.3
Q ss_pred CCCCCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCc
Q 005357 43 PDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGG 122 (700)
Q Consensus 43 ~~~~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~ 122 (700)
....+....++|||+|||+++||++|+++|+.||+|++|+|++|+.|+++||||||+|+++++|++||++|++..+ .
T Consensus 99 ~~~~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l-~-- 175 (346)
T TIGR01659 99 DDNDTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITV-R-- 175 (346)
T ss_pred CCcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCcc-C--
Confidence 3345566789999999999999999999999999999999999999999999999999999999999999988665 3
Q ss_pred cccceeecccccccccCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHH
Q 005357 123 VGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAIN 201 (700)
Q Consensus 123 ~~~l~V~~a~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~ 201 (700)
.++|+|.+++.... ...+++|||+||+++++++||+++|++||+|++|+|++|+ ++++||||||+|++.++|++||+
T Consensus 176 gr~i~V~~a~p~~~--~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~ 253 (346)
T TIGR01659 176 NKRLKVSYARPGGE--SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAIS 253 (346)
T ss_pred Cceeeeeccccccc--ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHH
Confidence 34588888765433 2345789999999999999999999999999999999887 68999999999999999999999
Q ss_pred HhcCceeccCCccceEEEecCCCCCCC
Q 005357 202 ALNGIYTMRGCDQPLTVRFADPKRPRP 228 (700)
Q Consensus 202 ~Lng~~~~~g~gr~L~V~~a~~k~~r~ 228 (700)
+||+..+ .+.++.|+|++++.+....
T Consensus 254 ~lng~~~-~g~~~~l~V~~a~~~~~~~ 279 (346)
T TIGR01659 254 ALNNVIP-EGGSQPLTVRLAEEHGKAK 279 (346)
T ss_pred HhCCCcc-CCCceeEEEEECCcccccc
Confidence 9999876 3345899999998865443
No 3
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2e-29 Score=251.99 Aligned_cols=168 Identities=24% Similarity=0.480 Sum_probs=153.0
Q ss_pred CCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceee
Q 005357 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVR 129 (700)
Q Consensus 50 ~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~ 129 (700)
.+--|||+.|..+++.|+|++.|.+||+|.+++|++|.+|+++|||+||.|.+.+|||+||..|++.-+ +.|.|+..
T Consensus 61 ~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl---G~R~IRTN 137 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL---GRRTIRTN 137 (321)
T ss_pred cceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeee---ccceeecc
Confidence 367799999999999999999999999999999999999999999999999999999999999998766 56779999
Q ss_pred ccccccccc--------------CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHH
Q 005357 130 YADGERERL--------------GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDM 195 (700)
Q Consensus 130 ~a~~~~~~~--------------~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~ 195 (700)
|+..+..+. +...++|||+|+..-++|++|++.|+.||.|.+|+|+++ +||+||+|++.|+
T Consensus 138 WATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGYaFVrF~tkEa 212 (321)
T KOG0148|consen 138 WATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGYAFVRFETKEA 212 (321)
T ss_pred ccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cceEEEEecchhh
Confidence 987654332 345689999999999999999999999999999999998 8999999999999
Q ss_pred HHHHHHHhcCceeccCCccceEEEecCCCCCCC
Q 005357 196 ALAAINALNGIYTMRGCDQPLTVRFADPKRPRP 228 (700)
Q Consensus 196 A~~Ai~~Lng~~~~~g~gr~L~V~~a~~k~~r~ 228 (700)
|..||..+|+..+ .+..|+|.|.+......
T Consensus 213 AahAIv~mNntei---~G~~VkCsWGKe~~~~~ 242 (321)
T KOG0148|consen 213 AAHAIVQMNNTEI---GGQLVRCSWGKEGDDGI 242 (321)
T ss_pred HHHHHHHhcCcee---CceEEEEeccccCCCCC
Confidence 9999999999999 79999999998865443
No 4
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=3.6e-28 Score=256.99 Aligned_cols=171 Identities=30% Similarity=0.527 Sum_probs=149.2
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccccee
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQV 128 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V 128 (700)
.-.|.||||.||.|+.|+||+.||++.|+|.+++||.|+.+|.+||||||.|.++++|++||+.||+..+..|+.+.+++
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999888887766666
Q ss_pred eccccc----------ccc----------------------------c--------------------------------
Q 005357 129 RYADGE----------RER----------------------------L-------------------------------- 138 (700)
Q Consensus 129 ~~a~~~----------~~~----------------------------~-------------------------------- 138 (700)
+.++.. .+. +
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~ 240 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAI 240 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcc
Confidence 554210 000 0
Q ss_pred -----------C----cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHh
Q 005357 139 -----------G----AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINAL 203 (700)
Q Consensus 139 -----------~----~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~L 203 (700)
+ ...+.|||+||..++|+|.|+++|++||.|++|+.++| ||||.|.++++|.+|++.+
T Consensus 241 tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~eR~davkAm~~~ 313 (506)
T KOG0117|consen 241 TVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVHFAEREDAVKAMKET 313 (506)
T ss_pred eeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEeecchHHHHHHHHHh
Confidence 0 00135999999999999999999999999999999887 9999999999999999999
Q ss_pred cCceeccCCccceEEEecCCCCCCCC
Q 005357 204 NGIYTMRGCDQPLTVRFADPKRPRPG 229 (700)
Q Consensus 204 ng~~~~~g~gr~L~V~~a~~k~~r~~ 229 (700)
||+.+ +|..|.|.+|++...++.
T Consensus 314 ngkel---dG~~iEvtLAKP~~k~k~ 336 (506)
T KOG0117|consen 314 NGKEL---DGSPIEVTLAKPVDKKKK 336 (506)
T ss_pred cCcee---cCceEEEEecCChhhhcc
Confidence 99999 899999999999765443
No 5
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.96 E-value=1.2e-28 Score=279.79 Aligned_cols=170 Identities=24% Similarity=0.418 Sum_probs=148.7
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccccee
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQV 128 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V 128 (700)
...|+|||+||++++++++|+++|+.||+|++|+|++|+.|+++||||||+|++.++|++||+.||+.. ++|+ .|+|
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~-i~GR--~IkV 181 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQM-LGGR--NIKV 181 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeE-Eecc--eeee
Confidence 457899999999999999999999999999999999999999999999999999999999999998754 4444 4666
Q ss_pred eccccccc---------ccCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHH
Q 005357 129 RYADGERE---------RLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALA 198 (700)
Q Consensus 129 ~~a~~~~~---------~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~ 198 (700)
.+...... ......++|||+||++++++++|+++|+.||.|++|+|.++. ++++||||||+|++.++|.+
T Consensus 182 ~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~k 261 (612)
T TIGR01645 182 GRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 261 (612)
T ss_pred cccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHH
Confidence 65432211 111234789999999999999999999999999999999986 57899999999999999999
Q ss_pred HHHHhcCceeccCCccceEEEecCCC
Q 005357 199 AINALNGIYTMRGCDQPLTVRFADPK 224 (700)
Q Consensus 199 Ai~~Lng~~~~~g~gr~L~V~~a~~k 224 (700)
||+.||+..+ +|+.|+|.++...
T Consensus 262 AI~amNg~el---gGr~LrV~kAi~p 284 (612)
T TIGR01645 262 AIASMNLFDL---GGQYLRVGKCVTP 284 (612)
T ss_pred HHHHhCCCee---CCeEEEEEecCCC
Confidence 9999999988 7999999988754
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=2.9e-28 Score=264.72 Aligned_cols=170 Identities=35% Similarity=0.635 Sum_probs=150.4
Q ss_pred CCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceee
Q 005357 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVR 129 (700)
Q Consensus 50 ~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~ 129 (700)
+.++|||+|||.+++|+||+++|+.||+|.+|+|++|+.+|+++|||||+|.+.++|++||+.|++..+ .| +.|+|+
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l-~g--~~i~v~ 78 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRL-QN--KTIKVS 78 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEE-CC--eeEEEE
Confidence 468999999999999999999999999999999999999999999999999999999999999988554 44 458888
Q ss_pred cccccccccCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCcee
Q 005357 130 YADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYT 208 (700)
Q Consensus 130 ~a~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~ 208 (700)
+++.... ....++|||+||+.++++++|+++|+.||.|+.++|+.+. ++.++|||||+|++.++|.+|++.|||..+
T Consensus 79 ~a~~~~~--~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~ 156 (352)
T TIGR01661 79 YARPSSD--SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTP 156 (352)
T ss_pred eeccccc--ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCcc
Confidence 7765432 2345689999999999999999999999999999998886 578999999999999999999999999765
Q ss_pred ccCCccceEEEecCCCC
Q 005357 209 MRGCDQPLTVRFADPKR 225 (700)
Q Consensus 209 ~~g~gr~L~V~~a~~k~ 225 (700)
.++.+.|+|+|++.+.
T Consensus 157 -~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 157 -SGCTEPITVKFANNPS 172 (352)
T ss_pred -CCCceeEEEEECCCCC
Confidence 4456789999998654
No 7
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=4.1e-27 Score=266.90 Aligned_cols=169 Identities=32% Similarity=0.521 Sum_probs=138.2
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
....++|||+|||.+++|++|+++|++||.|.+|+|++| .+|++||||||+|.+.|+|++||+.||+..+..++.+.++
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 345699999999999999999999999999999999999 7899999999999999999999999987655433221110
Q ss_pred --------------------------------------------------------------------------------
Q 005357 128 -------------------------------------------------------------------------------- 127 (700)
Q Consensus 128 -------------------------------------------------------------------------------- 127 (700)
T Consensus 134 ~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~ 213 (578)
T TIGR01648 134 ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHV 213 (578)
T ss_pred ccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCce
Confidence
Q ss_pred --eeccccccccc---CcccceeeccCCCccccHHHHHHHhcCC--CceeEEEEeeCCCCCccceEEEEeCCHHHHHHHH
Q 005357 128 --VRYADGERERL---GAVEYKLFVGSLNKQATEKEVEEIFSPY--GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAI 200 (700)
Q Consensus 128 --V~~a~~~~~~~---~~~s~~LfV~nLp~~~teedL~~~F~~f--G~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai 200 (700)
|+|+..+.... ....++|||+||++++++++|+++|++| |+|++|++++ +||||+|++.++|++|+
T Consensus 214 I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-------gfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 214 IAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-------DYAFVHFEDREDAVKAM 286 (578)
T ss_pred EEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-------CeEEEEeCCHHHHHHHH
Confidence 00000000000 0113579999999999999999999999 9999998764 49999999999999999
Q ss_pred HHhcCceeccCCccceEEEecCCCCCC
Q 005357 201 NALNGIYTMRGCDQPLTVRFADPKRPR 227 (700)
Q Consensus 201 ~~Lng~~~~~g~gr~L~V~~a~~k~~r 227 (700)
+.||+..+ +++.|+|+|++++...
T Consensus 287 ~~lnG~~i---~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 287 DELNGKEL---EGSEIEVTLAKPVDKK 310 (578)
T ss_pred HHhCCCEE---CCEEEEEEEccCCCcc
Confidence 99999988 8999999999987544
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=9.7e-28 Score=260.58 Aligned_cols=173 Identities=32% Similarity=0.560 Sum_probs=151.6
Q ss_pred CCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceee
Q 005357 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVR 129 (700)
Q Consensus 50 ~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~ 129 (700)
..++|||+||+.++++++|+++|+.||.|+.++++.+..++.++|||||+|++.++|++||+.|++. .+.+....|+|+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~-~~~g~~~~i~v~ 166 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGT-TPSGCTEPITVK 166 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC-ccCCCceeEEEE
Confidence 4678999999999999999999999999999999999888999999999999999999999999885 445555677777
Q ss_pred ccccccccc-----------------------------------------------------------------------
Q 005357 130 YADGERERL----------------------------------------------------------------------- 138 (700)
Q Consensus 130 ~a~~~~~~~----------------------------------------------------------------------- 138 (700)
+++......
T Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (352)
T TIGR01661 167 FANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASP 246 (352)
T ss_pred ECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCC
Confidence 764222000
Q ss_pred -------------------CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHH
Q 005357 139 -------------------GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALA 198 (700)
Q Consensus 139 -------------------~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~ 198 (700)
...+++|||+||++++++++|+++|++||.|++|+|++|. ++.+||||||+|++.++|.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~ 326 (352)
T TIGR01661 247 PATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAM 326 (352)
T ss_pred ccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHH
Confidence 0011259999999999999999999999999999999997 79999999999999999999
Q ss_pred HHHHhcCceeccCCccceEEEecCCCCC
Q 005357 199 AINALNGIYTMRGCDQPLTVRFADPKRP 226 (700)
Q Consensus 199 Ai~~Lng~~~~~g~gr~L~V~~a~~k~~ 226 (700)
||+.|||..+ +||.|+|.|+..+..
T Consensus 327 Ai~~lnG~~~---~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 327 AILSLNGYTL---GNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHHhCCCEE---CCeEEEEEEccCCCC
Confidence 9999999998 799999999988754
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=2.4e-27 Score=273.62 Aligned_cols=176 Identities=28% Similarity=0.488 Sum_probs=151.4
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCC-ccccc
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPG-GVGPI 126 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g-~~~~l 126 (700)
....++|||+||+.++|+++|+++|+.||+|++|+++++. +++++|||||+|++.++|++|++.|++..+... ....+
T Consensus 175 ~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l 253 (562)
T TIGR01628 175 LKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKL 253 (562)
T ss_pred ccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceee
Confidence 3456789999999999999999999999999999999985 589999999999999999999999988665310 02346
Q ss_pred eeecccccccc----------------cCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEe
Q 005357 127 QVRYADGERER----------------LGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKY 190 (700)
Q Consensus 127 ~V~~a~~~~~~----------------~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF 190 (700)
.|.++..+.++ .....++|||+||++++++++|+++|++||.|++|+|+.|.++.++|||||+|
T Consensus 254 ~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f 333 (562)
T TIGR01628 254 YVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCF 333 (562)
T ss_pred EeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEe
Confidence 66655433222 12335679999999999999999999999999999999998899999999999
Q ss_pred CCHHHHHHHHHHhcCceeccCCccceEEEecCCCCCC
Q 005357 191 SHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227 (700)
Q Consensus 191 ~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~~k~~r 227 (700)
++.++|.+|++.|||+.+ ++++|+|.++..+..+
T Consensus 334 ~~~~~A~~A~~~~~g~~~---~gk~l~V~~a~~k~~~ 367 (562)
T TIGR01628 334 SNPEEANRAVTEMHGRML---GGKPLYVALAQRKEQR 367 (562)
T ss_pred CCHHHHHHHHHHhcCCee---CCceeEEEeccCcHHH
Confidence 999999999999999887 7999999999987644
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=8.1e-28 Score=277.46 Aligned_cols=169 Identities=26% Similarity=0.453 Sum_probs=151.7
Q ss_pred eEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceeeccc
Q 005357 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYAD 132 (700)
Q Consensus 53 tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~~a~ 132 (700)
+|||+||+.++||++|+++|++||+|++|+|++|+.|++++|||||+|.+.++|++||+.|++..+ .| +.|+|.|+.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i-~g--k~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRL-GG--KPIRIMWSQ 78 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE-CC--eeEEeeccc
Confidence 799999999999999999999999999999999999999999999999999999999999977555 33 458888876
Q ss_pred ccccccCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCC
Q 005357 133 GERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGC 212 (700)
Q Consensus 133 ~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~ 212 (700)
.+.........+|||+||+.++++++|+++|++||.|++|+|+.+++++++|||||+|++.++|.+|++.|||..+ +
T Consensus 79 ~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~---~ 155 (562)
T TIGR01628 79 RDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLL---N 155 (562)
T ss_pred ccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEe---c
Confidence 5555555556789999999999999999999999999999999999999999999999999999999999999987 7
Q ss_pred ccceEEEecCCCCCC
Q 005357 213 DQPLTVRFADPKRPR 227 (700)
Q Consensus 213 gr~L~V~~a~~k~~r 227 (700)
++.|.|.....+..+
T Consensus 156 ~~~i~v~~~~~~~~~ 170 (562)
T TIGR01628 156 DKEVYVGRFIKKHER 170 (562)
T ss_pred CceEEEecccccccc
Confidence 899998776655433
No 11
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.94 E-value=3.3e-26 Score=257.47 Aligned_cols=170 Identities=31% Similarity=0.539 Sum_probs=146.7
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
....++|||+|||.++++++|+++|+.||.|++|+|++|+.+++++|||||+|.+.++|++||+ |++..+ .| +.|.
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~-~g--~~i~ 161 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQML-LG--RPII 161 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEE-CC--eeeE
Confidence 3457899999999999999999999999999999999999999999999999999999999997 777555 34 3455
Q ss_pred eeccccccccc----------CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCC-CCccceEEEEeCCHHHH
Q 005357 128 VRYADGERERL----------GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDEL-KQSRGCGFVKYSHRDMA 196 (700)
Q Consensus 128 V~~a~~~~~~~----------~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~-g~srG~aFVeF~~~e~A 196 (700)
|.++..+.... ....++|||+||+.++++++|+++|+.||.|+.|.|+.+.. +.++|||||+|.+.++|
T Consensus 162 v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A 241 (457)
T TIGR01622 162 VQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEA 241 (457)
T ss_pred EeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 55543322111 12257899999999999999999999999999999998874 68999999999999999
Q ss_pred HHHHHHhcCceeccCCccceEEEecCCC
Q 005357 197 LAAINALNGIYTMRGCDQPLTVRFADPK 224 (700)
Q Consensus 197 ~~Ai~~Lng~~~~~g~gr~L~V~~a~~k 224 (700)
.+|++.|+|..+ .++.|+|.|+...
T Consensus 242 ~~A~~~l~g~~i---~g~~i~v~~a~~~ 266 (457)
T TIGR01622 242 KEALEVMNGFEL---AGRPIKVGYAQDS 266 (457)
T ss_pred HHHHHhcCCcEE---CCEEEEEEEccCC
Confidence 999999999877 7899999998743
No 12
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=6.8e-27 Score=232.20 Aligned_cols=172 Identities=34% Similarity=0.621 Sum_probs=156.7
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
++..+.|+|..||.++|+|||+.+|...|+|++|++++|+.||.+.||+||.|.+++||++||..||+..+ ....|+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrL---Q~KTIK 114 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRL---QNKTIK 114 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceee---ccceEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999998766 556799
Q ss_pred eecccccccccCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCc
Q 005357 128 VRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGI 206 (700)
Q Consensus 128 V~~a~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~ 206 (700)
|++++.....+ ...+|||.+||...|..||+.+|+.||.|..-+|+.|. +|.+||++||+|+.+++|++||+.|||.
T Consensus 115 VSyARPSs~~I--k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~ 192 (360)
T KOG0145|consen 115 VSYARPSSDSI--KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQ 192 (360)
T ss_pred EEeccCChhhh--cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCC
Confidence 99998765543 35689999999999999999999999999998988887 6899999999999999999999999998
Q ss_pred eeccCCccceEEEecCCCC
Q 005357 207 YTMRGCDQPLTVRFADPKR 225 (700)
Q Consensus 207 ~~~~g~gr~L~V~~a~~k~ 225 (700)
.- .+|..+|.|+|+....
T Consensus 193 ~P-~g~tepItVKFannPs 210 (360)
T KOG0145|consen 193 KP-SGCTEPITVKFANNPS 210 (360)
T ss_pred CC-CCCCCCeEEEecCCcc
Confidence 64 6789999999998753
No 13
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.91 E-value=3e-24 Score=204.32 Aligned_cols=173 Identities=34% Similarity=0.557 Sum_probs=149.7
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
.....+||||||+..++++-|.|+|-..|+|++|.+.+|+.|...+|||||+|.++|||+-||+-|+.-+ +.| ++|+
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~Vk-LYg--rpIr 82 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVK-LYG--RPIR 82 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHH-hcC--ceeE
Confidence 4456799999999999999999999999999999999999999999999999999999999999997434 334 4577
Q ss_pred eecccccccccCcccceeeccCCCccccHHHHHHHhcCCCceeE-EEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcC
Q 005357 128 VRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED-VYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNG 205 (700)
Q Consensus 128 V~~a~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~-v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng 205 (700)
|+.+. .....-....+|||+||.++++|..|.+.|+.||.+.. -+|+++. ++.++||+||.|++.|++.+|++.++|
T Consensus 83 v~kas-~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ng 161 (203)
T KOG0131|consen 83 VNKAS-AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNG 161 (203)
T ss_pred EEecc-cccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhcc
Confidence 77665 33333445689999999999999999999999998765 4777776 589999999999999999999999999
Q ss_pred ceeccCCccceEEEecCCCCCC
Q 005357 206 IYTMRGCDQPLTVRFADPKRPR 227 (700)
Q Consensus 206 ~~~~~g~gr~L~V~~a~~k~~r 227 (700)
..+ ++++++|.++..++.+
T Consensus 162 q~l---~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 162 QYL---CNRPITVSYAFKKDTK 180 (203)
T ss_pred chh---cCCceEEEEEEecCCC
Confidence 988 8999999999876443
No 14
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.91 E-value=1.2e-23 Score=238.39 Aligned_cols=164 Identities=20% Similarity=0.287 Sum_probs=135.9
Q ss_pred CCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc-cccCCCcccccee
Q 005357 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHN-QHTLPGGVGPIQV 128 (700)
Q Consensus 50 ~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g-~~~~~g~~~~l~V 128 (700)
++++|||+|||+++||+||+++|+.||.|++|+|+++ ||||||+|++.++|++||+.++. ...+.| +.|+|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g--~~l~v 72 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRG--QPAFF 72 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcC--eEEEE
Confidence 3689999999999999999999999999999999865 36999999999999999997632 244444 45888
Q ss_pred ecccccccccC----------cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHH
Q 005357 129 RYADGERERLG----------AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALA 198 (700)
Q Consensus 129 ~~a~~~~~~~~----------~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~ 198 (700)
.++..+..... ....+|||+||++++++++|+++|++||.|++|.|++++. +++|||+|++.++|.+
T Consensus 73 ~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~---~~~afVef~~~~~A~~ 149 (481)
T TIGR01649 73 NYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN---VFQALVEFESVNSAQH 149 (481)
T ss_pred EecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC---ceEEEEEECCHHHHHH
Confidence 87754321111 1224799999999999999999999999999999987632 4699999999999999
Q ss_pred HHHHhcCceeccCCccceEEEecCCCC
Q 005357 199 AINALNGIYTMRGCDQPLTVRFADPKR 225 (700)
Q Consensus 199 Ai~~Lng~~~~~g~gr~L~V~~a~~k~ 225 (700)
|++.|||..++.+ .+.|+|+|++...
T Consensus 150 A~~~Lng~~i~~~-~~~l~v~~sk~~~ 175 (481)
T TIGR01649 150 AKAALNGADIYNG-CCTLKIEYAKPTR 175 (481)
T ss_pred HHHHhcCCcccCC-ceEEEEEEecCCC
Confidence 9999999998643 4689999998754
No 15
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.91 E-value=1.7e-23 Score=237.16 Aligned_cols=165 Identities=21% Similarity=0.325 Sum_probs=136.8
Q ss_pred CCCCceEEEeCCCC-CCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccc
Q 005357 48 GSSFAKLFVGSVPK-TAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPI 126 (700)
Q Consensus 48 ~~~~~tLfVgnLP~-~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l 126 (700)
...+++|||+||+. ++|+++|+++|+.||.|.+|+|++++ +|||||+|.+.++|++||+.|++..+ .|+ .|
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l-~g~--~l 343 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKL-FGK--PL 343 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEE-CCc--eE
Confidence 34678999999997 69999999999999999999999874 58999999999999999999988555 444 46
Q ss_pred eeeccccccc------------------------c-----------cCcccceeeccCCCccccHHHHHHHhcCCCc--e
Q 005357 127 QVRYADGERE------------------------R-----------LGAVEYKLFVGSLNKQATEKEVEEIFSPYGR--V 169 (700)
Q Consensus 127 ~V~~a~~~~~------------------------~-----------~~~~s~~LfV~nLp~~~teedL~~~F~~fG~--V 169 (700)
+|++++.+.. + ....+.+|||+||++++++++|+++|+.||. |
T Consensus 344 ~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i 423 (481)
T TIGR01649 344 RVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKV 423 (481)
T ss_pred EEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccc
Confidence 6665532210 0 0123468999999999999999999999998 8
Q ss_pred eEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccc------eEEEecCCC
Q 005357 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQP------LTVRFADPK 224 (700)
Q Consensus 170 ~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~------L~V~~a~~k 224 (700)
+.|+|+.++++ .+++|||+|++.++|.+|+..||++.+ +++. |+|.|++++
T Consensus 424 ~~ik~~~~~~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l---~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 424 KKFKFFPKDNE-RSKMGLLEWESVEDAVEALIALNHHQL---NEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred eEEEEecCCCC-cceeEEEEcCCHHHHHHHHHHhcCCcc---CCCCCCccceEEEEeccCC
Confidence 88888765444 578999999999999999999999988 5664 999998765
No 16
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.91 E-value=3.5e-23 Score=235.93 Aligned_cols=170 Identities=25% Similarity=0.364 Sum_probs=140.7
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccccee
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQV 128 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V 128 (700)
...++|||+|||.++|+++|+++|+.||.|+.|+|++++.||.++|||||+|.+.++|++||+.|++..+ .++ .|.|
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~-~~~--~l~v 369 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDT-GDN--KLHV 369 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE-CCe--EEEE
Confidence 4568999999999999999999999999999999999999999999999999999999999999988665 333 3666
Q ss_pred ecccccccc--------------------------cCcccceeeccCCCcc----------ccHHHHHHHhcCCCceeEE
Q 005357 129 RYADGERER--------------------------LGAVEYKLFVGSLNKQ----------ATEKEVEEIFSPYGRVEDV 172 (700)
Q Consensus 129 ~~a~~~~~~--------------------------~~~~s~~LfV~nLp~~----------~teedL~~~F~~fG~V~~v 172 (700)
.++...... ....+.+|+|.||... ...++|+++|++||.|+.|
T Consensus 370 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v 449 (509)
T TIGR01642 370 QRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINI 449 (509)
T ss_pred EECccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEE
Confidence 665321110 0123567889888531 1246899999999999999
Q ss_pred EEeeCC----CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEecCCC
Q 005357 173 YLMRDE----LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224 (700)
Q Consensus 173 ~I~~d~----~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~~k 224 (700)
.|+++. .+..+|++||+|++.++|.+|+.+|||..+ +|+.|.|.|....
T Consensus 450 ~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~---~gr~v~~~~~~~~ 502 (509)
T TIGR01642 450 VIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKF---NDRVVVAAFYGED 502 (509)
T ss_pred EeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEE---CCeEEEEEEeCHH
Confidence 998763 245679999999999999999999999998 7999999998753
No 17
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.91 E-value=2.9e-24 Score=217.02 Aligned_cols=149 Identities=29% Similarity=0.533 Sum_probs=135.7
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceeecc
Q 005357 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYA 131 (700)
Q Consensus 52 ~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~~a 131 (700)
.+|||||||.++++.+|+.+|++||+|++|+|+++ |+||..+++..|++||+.||+..+ +| ..|+|+.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtL-hg--~nInVeaS 71 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTL-HG--VNINVEAS 71 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhccccee-cc--eEEEEEec
Confidence 47999999999999999999999999999999987 999999999999999999988555 44 44777766
Q ss_pred cccccccCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccC
Q 005357 132 DGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRG 211 (700)
Q Consensus 132 ~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g 211 (700)
+.+ +..+++|+|+||.+.++.+||+..|++||.|.+++|++| |+||.|+..++|..||+.||++.+
T Consensus 72 ksK----sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-------y~fvh~d~~eda~~air~l~~~~~--- 137 (346)
T KOG0109|consen 72 KSK----SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-------YAFVHFDRAEDAVEAIRGLDNTEF--- 137 (346)
T ss_pred ccc----CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc-------eeEEEEeeccchHHHHhccccccc---
Confidence 655 445789999999999999999999999999999999977 999999999999999999999998
Q ss_pred CccceEEEecCCCC
Q 005357 212 CDQPLTVRFADPKR 225 (700)
Q Consensus 212 ~gr~L~V~~a~~k~ 225 (700)
+|++++|.++..+-
T Consensus 138 ~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 138 QGKRMHVQLSTSRL 151 (346)
T ss_pred ccceeeeeeecccc
Confidence 89999999998764
No 18
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=2.9e-23 Score=207.15 Aligned_cols=175 Identities=34% Similarity=0.618 Sum_probs=160.6
Q ss_pred CCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceee
Q 005357 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVR 129 (700)
Q Consensus 50 ~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~ 129 (700)
+.++||||-|.+.-.|||++++|..||+|++|.+.+..+ |.+|||+||+|.+..||..||+.||+...+.|....|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 668999999999999999999999999999999999764 9999999999999999999999999999999999999999
Q ss_pred ccccccccc-----------------------------------------------------------------------
Q 005357 130 YADGERERL----------------------------------------------------------------------- 138 (700)
Q Consensus 130 ~a~~~~~~~----------------------------------------------------------------------- 138 (700)
++|.++++.
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 998766552
Q ss_pred --------------------------------------------------------------------------------
Q 005357 139 -------------------------------------------------------------------------------- 138 (700)
Q Consensus 139 -------------------------------------------------------------------------------- 138 (700)
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence
Q ss_pred -------------------------CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCC
Q 005357 139 -------------------------GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSH 192 (700)
Q Consensus 139 -------------------------~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~ 192 (700)
+.+.|+|||-.||.++.+.||...|-.||.|.+.+|+.|+ ++.+|+|+||.|++
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCC
Confidence 1235789999999999999999999999999999999987 78999999999999
Q ss_pred HHHHHHHHHHhcCceeccCCccceEEEecCCCCCCC
Q 005357 193 RDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRP 228 (700)
Q Consensus 193 ~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~~k~~r~ 228 (700)
..+|.+||.++||..| +-++|+|.+.++|+..+
T Consensus 337 p~SaQaAIqAMNGFQI---GMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 337 PASAQAAIQAMNGFQI---GMKRLKVQLKRPKDANR 369 (371)
T ss_pred chhHHHHHHHhcchhh---hhhhhhhhhcCccccCC
Confidence 9999999999999888 67999999999987543
No 19
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.89 E-value=1.3e-22 Score=231.22 Aligned_cols=165 Identities=24% Similarity=0.375 Sum_probs=133.1
Q ss_pred CCCCCceEEEeCCCCCCcHHHHHHHHhcc------------CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 005357 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEH------------GNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALH 114 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~~vteedL~elF~~~------------G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~ 114 (700)
.....++|||||||+++|+++|+++|+.| +.|..|.+ ++.+|||||+|++.++|++||+ |+
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~ 243 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LD 243 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CC
Confidence 34567899999999999999999999975 23444443 4457899999999999999995 87
Q ss_pred ccccCCCccccceeeccccccc---------------------------ccCcccceeeccCCCccccHHHHHHHhcCCC
Q 005357 115 NQHTLPGGVGPIQVRYADGERE---------------------------RLGAVEYKLFVGSLNKQATEKEVEEIFSPYG 167 (700)
Q Consensus 115 g~~~~~g~~~~l~V~~a~~~~~---------------------------~~~~~s~~LfV~nLp~~~teedL~~~F~~fG 167 (700)
+.. +.| +.|+|........ ......++|||+||++.+++++|+++|+.||
T Consensus 244 g~~-~~g--~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G 320 (509)
T TIGR01642 244 SII-YSN--VFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFG 320 (509)
T ss_pred CeE-eeC--ceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 754 444 4455543321110 0112346899999999999999999999999
Q ss_pred ceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEecCCC
Q 005357 168 RVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224 (700)
Q Consensus 168 ~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~~k 224 (700)
.|+.+.|+++. +|.++|||||+|.+.++|..||+.|+|..+ +++.|+|.++...
T Consensus 321 ~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~---~~~~l~v~~a~~~ 375 (509)
T TIGR01642 321 DLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDT---GDNKLHVQRACVG 375 (509)
T ss_pred CeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE---CCeEEEEEECccC
Confidence 99999999885 688999999999999999999999999998 7899999998754
No 20
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=9.8e-23 Score=202.71 Aligned_cols=172 Identities=31% Similarity=0.546 Sum_probs=151.4
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccccee
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQV 128 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V 128 (700)
.....|||.+||+.+|..||+.+|+.||.|..-+|+.|..||.+||.+||.|+..++|++||+.||+.+. .|....|.|
T Consensus 125 Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P-~g~tepItV 203 (360)
T KOG0145|consen 125 IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKP-SGCTEPITV 203 (360)
T ss_pred hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCC-CCCCCCeEE
Confidence 3457899999999999999999999999999999999999999999999999999999999999988554 456677888
Q ss_pred eccccccccc-------------------------------------------------------------Ccccceeec
Q 005357 129 RYADGERERL-------------------------------------------------------------GAVEYKLFV 147 (700)
Q Consensus 129 ~~a~~~~~~~-------------------------------------------------------------~~~s~~LfV 147 (700)
+++....... .....+|||
T Consensus 204 KFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFv 283 (360)
T KOG0145|consen 204 KFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFV 283 (360)
T ss_pred EecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEE
Confidence 8874211100 011357999
Q ss_pred cCCCccccHHHHHHHhcCCCceeEEEEeeCCC-CCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEecCCC
Q 005357 148 GSLNKQATEKEVEEIFSPYGRVEDVYLMRDEL-KQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224 (700)
Q Consensus 148 ~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~-g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~~k 224 (700)
-||..+++|.-|+.+|..||.|..|+|++|-+ .++|||+||.+.+.++|..||..|||..+ ++|.|.|.|...+
T Consensus 284 YNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~l---g~rvLQVsFKtnk 358 (360)
T KOG0145|consen 284 YNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRL---GDRVLQVSFKTNK 358 (360)
T ss_pred EecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccc---cceEEEEEEecCC
Confidence 99999999999999999999999999999975 89999999999999999999999999988 7999999998765
No 21
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.88 E-value=3.6e-22 Score=210.66 Aligned_cols=175 Identities=27% Similarity=0.451 Sum_probs=148.2
Q ss_pred CCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceee
Q 005357 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVR 129 (700)
Q Consensus 50 ~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~ 129 (700)
+.++||||+|++++++|.|++.|+.||+|.+|.+++|+.|++++||+||+|++.+.+.++|.. ..+.++++....+..
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~--~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA--RTHKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc--cccccCCccccceec
Confidence 789999999999999999999999999999999999999999999999999999999999876 456677766444444
Q ss_pred ccccccccc--CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCc
Q 005357 130 YADGERERL--GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGI 206 (700)
Q Consensus 130 ~a~~~~~~~--~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~ 206 (700)
.++...... .....+|||++|+.+++++++++.|++||.|.++.|+.|. +.+.+||+||.|++.+++++++. +.-+
T Consensus 83 v~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~ 161 (311)
T KOG4205|consen 83 VSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFH 161 (311)
T ss_pred cCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-ccee
Confidence 444333322 2246799999999999999999999999999999999987 57899999999999999998876 3444
Q ss_pred eeccCCccceEEEecCCCCCCCCC
Q 005357 207 YTMRGCDQPLTVRFADPKRPRPGD 230 (700)
Q Consensus 207 ~~~~g~gr~L~V~~a~~k~~r~~~ 230 (700)
.+ +++.+.|+.|.++......
T Consensus 162 ~~---~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 162 DF---NGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred ee---cCceeeEeeccchhhcccc
Confidence 55 7999999999998765443
No 22
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=1e-21 Score=212.20 Aligned_cols=169 Identities=21% Similarity=0.422 Sum_probs=147.1
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceeecc
Q 005357 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYA 131 (700)
Q Consensus 52 ~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~~a 131 (700)
.||||++||+.++.++|.++|+.+|+|..|.++.++.++.+|||+||.|.-.||+++|++.++... +.|+ .|+|..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~k-f~Gr--~l~v~~A 82 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSK-FEGR--ILNVDPA 82 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCc-ccce--ecccccc
Confidence 799999999999999999999999999999999999999999999999999999999999886644 4444 4555544
Q ss_pred cccccc------------------------cCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEE
Q 005357 132 DGERER------------------------LGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGF 187 (700)
Q Consensus 132 ~~~~~~------------------------~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aF 187 (700)
...... ......+|.|.|||+.+.+.||+.+|+.||.|.+|.|.+...++-.||||
T Consensus 83 ~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaF 162 (678)
T KOG0127|consen 83 KKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAF 162 (678)
T ss_pred cccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEE
Confidence 321100 01225689999999999999999999999999999999888887779999
Q ss_pred EEeCCHHHHHHHHHHhcCceeccCCccceEEEecCCCCC
Q 005357 188 VKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226 (700)
Q Consensus 188 VeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~~k~~ 226 (700)
|.|.+..+|.+|++.+|+..| +||+|.|.||-.++.
T Consensus 163 V~fk~~~dA~~Al~~~N~~~i---~gR~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 163 VQFKEKKDAEKALEFFNGNKI---DGRPVAVDWAVDKDT 198 (678)
T ss_pred EEEeeHHHHHHHHHhccCcee---cCceeEEeeeccccc
Confidence 999999999999999999999 899999999988753
No 23
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.87 E-value=2e-21 Score=218.74 Aligned_cols=165 Identities=33% Similarity=0.512 Sum_probs=136.2
Q ss_pred CceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceeec
Q 005357 51 FAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRY 130 (700)
Q Consensus 51 ~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~~ 130 (700)
.++|||+||+.++|+++|+++|+.||.|.+|+|+.++.+|+++|||||+|.+.++|++|++.|++..+ .| +.|+|.+
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i-~g--~~i~v~~ 262 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFEL-AG--RPIKVGY 262 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEE-CC--EEEEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999988444 44 4577777
Q ss_pred ccccccc-------------------------------------------------------------------------
Q 005357 131 ADGERER------------------------------------------------------------------------- 137 (700)
Q Consensus 131 a~~~~~~------------------------------------------------------------------------- 137 (700)
+......
T Consensus 263 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (457)
T TIGR01622 263 AQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATG 342 (457)
T ss_pred ccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccccccccccccccccc
Confidence 3210000
Q ss_pred ---------------cCcccceeeccCCCcccc----------HHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCC
Q 005357 138 ---------------LGAVEYKLFVGSLNKQAT----------EKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSH 192 (700)
Q Consensus 138 ---------------~~~~s~~LfV~nLp~~~t----------eedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~ 192 (700)
......+|+|.||-...+ ++||+++|++||.|+.|.|... ...|++||+|++
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~---~~~G~~fV~F~~ 419 (457)
T TIGR01622 343 ALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTK---NSAGKIYLKFSS 419 (457)
T ss_pred ccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCC---CCceeEEEEECC
Confidence 012335677888743322 3789999999999999998643 357999999999
Q ss_pred HHHHHHHHHHhcCceeccCCccceEEEecCCC
Q 005357 193 RDMALAAINALNGIYTMRGCDQPLTVRFADPK 224 (700)
Q Consensus 193 ~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~~k 224 (700)
.++|.+|++.|||+.+ +|+.|.|.|....
T Consensus 420 ~e~A~~A~~~lnGr~f---~gr~i~~~~~~~~ 448 (457)
T TIGR01622 420 VDAALAAFQALNGRYF---GGKMITAAFVVND 448 (457)
T ss_pred HHHHHHHHHHhcCccc---CCeEEEEEEEcHH
Confidence 9999999999999988 8999999998754
No 24
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=7e-22 Score=208.63 Aligned_cols=174 Identities=29% Similarity=0.548 Sum_probs=158.1
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccccee
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQV 128 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V 128 (700)
.+.++||||-|++.+||+||+++|++||.|++|.|++|.. +.+||||||+|.+.|.|..||++||+...+.|...+|.|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 5688999999999999999999999999999999999975 999999999999999999999999999999999999999
Q ss_pred eccccccccc----------------------------------------------------------------------
Q 005357 129 RYADGERERL---------------------------------------------------------------------- 138 (700)
Q Consensus 129 ~~a~~~~~~~---------------------------------------------------------------------- 138 (700)
+|+|.++++.
T Consensus 201 kFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~ 280 (510)
T KOG0144|consen 201 KFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAAL 280 (510)
T ss_pred EecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHh
Confidence 9997655432
Q ss_pred --------------------------------------------------------------------------------
Q 005357 139 -------------------------------------------------------------------------------- 138 (700)
Q Consensus 139 -------------------------------------------------------------------------------- 138 (700)
T Consensus 281 ~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~ 360 (510)
T KOG0144|consen 281 AAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPV 360 (510)
T ss_pred hhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCcc
Confidence
Q ss_pred ------------------------------------------------------------CcccceeeccCCCccccHHH
Q 005357 139 ------------------------------------------------------------GAVEYKLFVGSLNKQATEKE 158 (700)
Q Consensus 139 ------------------------------------------------------------~~~s~~LfV~nLp~~~teed 158 (700)
+....+|||..||.++-+.|
T Consensus 361 aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~ 440 (510)
T KOG0144|consen 361 AASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQD 440 (510)
T ss_pred cccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHH
Confidence 01123499999999999999
Q ss_pred HHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEecCCCCC
Q 005357 159 VEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226 (700)
Q Consensus 159 L~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~~k~~ 226 (700)
|-..|..||.|+..+++.|+ ++-+++|+||.|++..+|..||..+||..+ +.++|+|...+.+..
T Consensus 441 l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQi---g~KrlkVQlk~~~~n 506 (510)
T KOG0144|consen 441 LIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQI---GSKRLKVQLKRDRNN 506 (510)
T ss_pred HHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhh---ccccceEEeeeccCC
Confidence 99999999999999999887 789999999999999999999999999988 789999999887643
No 25
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=2.7e-21 Score=210.51 Aligned_cols=158 Identities=25% Similarity=0.482 Sum_probs=141.5
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceeecc
Q 005357 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYA 131 (700)
Q Consensus 52 ~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~~a 131 (700)
..|||| +++||.+|+++|+.+|+|++|+|++|- | +.|||||.|.+.+||++||+++|. ..+.| +.+++-|+
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~-~~~~~--~~~rim~s 72 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNF-DVLKG--KPIRIMWS 72 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCC-cccCC--cEEEeehh
Confidence 369999 999999999999999999999999998 7 999999999999999999999965 44444 55888887
Q ss_pred cccccccCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccC
Q 005357 132 DGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRG 211 (700)
Q Consensus 132 ~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g 211 (700)
..+... |||.||+++++.++|.++|+.||.|.+|++..+++| ++|| ||+|++.++|.+||+.+||..+
T Consensus 73 ~rd~~~-------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll--- 140 (369)
T KOG0123|consen 73 QRDPSL-------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLL--- 140 (369)
T ss_pred ccCCce-------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCccc---
Confidence 654333 999999999999999999999999999999999988 9999 9999999999999999999988
Q ss_pred CccceEEEecCCCCCCCCC
Q 005357 212 CDQPLTVRFADPKRPRPGD 230 (700)
Q Consensus 212 ~gr~L~V~~a~~k~~r~~~ 230 (700)
+++.|.|.....+..|...
T Consensus 141 ~~kki~vg~~~~~~er~~~ 159 (369)
T KOG0123|consen 141 NGKKIYVGLFERKEEREAP 159 (369)
T ss_pred CCCeeEEeeccchhhhccc
Confidence 7899999998887665543
No 26
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=1.4e-21 Score=202.02 Aligned_cols=168 Identities=24% Similarity=0.427 Sum_probs=144.2
Q ss_pred CCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceee
Q 005357 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVR 129 (700)
Q Consensus 50 ~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~ 129 (700)
-.|+||||.|.++..|+.||..|..||+|++|++.+|..|++.||||||+|+-+|.|..|++.+|+. ++.| +.|+|.
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~-mlGG--RNiKVg 188 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQ-MLGG--RNIKVG 188 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccc-cccC--cccccc
Confidence 3689999999999999999999999999999999999999999999999999999999999999874 4444 457776
Q ss_pred cccccccc---------cCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCC-CCccceEEEEeCCHHHHHHH
Q 005357 130 YADGERER---------LGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDEL-KQSRGCGFVKYSHRDMALAA 199 (700)
Q Consensus 130 ~a~~~~~~---------~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~-g~srG~aFVeF~~~e~A~~A 199 (700)
....-... ....-++|||..+..+.+|+||+.+|+.||+|++|.+-++.+ +..|||+||||++..+-..|
T Consensus 189 rPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eA 268 (544)
T KOG0124|consen 189 RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEA 268 (544)
T ss_pred CCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHH
Confidence 55432111 112246899999999999999999999999999999999986 57899999999999999999
Q ss_pred HHHhcCceeccCCccceEEEecCC
Q 005357 200 INALNGIYTMRGCDQPLTVRFADP 223 (700)
Q Consensus 200 i~~Lng~~~~~g~gr~L~V~~a~~ 223 (700)
|..+|-..+ +|..|+|-.+-.
T Consensus 269 iasMNlFDL---GGQyLRVGk~vT 289 (544)
T KOG0124|consen 269 IASMNLFDL---GGQYLRVGKCVT 289 (544)
T ss_pred hhhcchhhc---ccceEecccccC
Confidence 998886555 788888876644
No 27
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=1.4e-20 Score=203.51 Aligned_cols=169 Identities=24% Similarity=0.458 Sum_probs=141.1
Q ss_pred CceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceeec
Q 005357 51 FAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRY 130 (700)
Q Consensus 51 ~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~~ 130 (700)
.-+|+|+|||+.+.+.||..+|+.||.|++|.|.+.+. |+-+|||||.|.+..+|++||+.+|+..+ +| +.|-|.|
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i-~g--R~VAVDW 192 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKI-DG--RPVAVDW 192 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCcee-cC--ceeEEee
Confidence 67899999999999999999999999999999997765 55569999999999999999999987555 33 5577877
Q ss_pred cccccc--------------------------------------------c--c--------------------------
Q 005357 131 ADGERE--------------------------------------------R--L-------------------------- 138 (700)
Q Consensus 131 a~~~~~--------------------------------------------~--~-------------------------- 138 (700)
+-.+.. . .
T Consensus 193 AV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~ 272 (678)
T KOG0127|consen 193 AVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSG 272 (678)
T ss_pred ecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccc
Confidence 721000 0 0
Q ss_pred ----------------CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHH
Q 005357 139 ----------------GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAIN 201 (700)
Q Consensus 139 ----------------~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~ 201 (700)
.....+|||.||++++++++|.++|++||.|.++.|+.++ ++.++|+|||.|.+..+|..||+
T Consensus 273 ~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~ 352 (678)
T KOG0127|consen 273 KKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIE 352 (678)
T ss_pred cCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHH
Confidence 0012579999999999999999999999999999999987 68999999999999999999999
Q ss_pred Hh-----cCceeccCCccceEEEecCCCC
Q 005357 202 AL-----NGIYTMRGCDQPLTVRFADPKR 225 (700)
Q Consensus 202 ~L-----ng~~~~~g~gr~L~V~~a~~k~ 225 (700)
+. .|..++ +||-|.|..+-.+.
T Consensus 353 ~Aspa~e~g~~ll--~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 353 AASPASEDGSVLL--DGRLLKVTLAVTRK 379 (678)
T ss_pred hcCccCCCceEEE--eccEEeeeeccchH
Confidence 87 342343 78999999988764
No 28
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=5.5e-19 Score=168.52 Aligned_cols=161 Identities=21% Similarity=0.363 Sum_probs=131.8
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccccee
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQV 128 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V 128 (700)
..+|+|||||||.++.|.||+++|.+||.|++|.|...+ ..-.||||+|++..||++||..-++..+ ++ ..|+|
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdy-dg--~rLRV 77 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDY-DG--CRLRV 77 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhccccccc-Cc--ceEEE
Confidence 467999999999999999999999999999999986653 2457999999999999999998766444 44 45888
Q ss_pred ecccccccc------------------------cCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccc
Q 005357 129 RYADGERER------------------------LGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRG 184 (700)
Q Consensus 129 ~~a~~~~~~------------------------~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG 184 (700)
+++...+.. ....+.+|.|.+||.+.++.||+++..+-|.|....+.+| |
T Consensus 78 Efprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g 151 (241)
T KOG0105|consen 78 EFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------G 151 (241)
T ss_pred EeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------c
Confidence 887544211 1233568999999999999999999999999999999887 5
Q ss_pred eEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEecC
Q 005357 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222 (700)
Q Consensus 185 ~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~ 222 (700)
++.|+|...|+.+-|+.+|+...+.. .+....+....
T Consensus 152 ~GvV~~~r~eDMkYAvr~ld~~~~~s-eGe~~yirv~~ 188 (241)
T KOG0105|consen 152 VGVVEYLRKEDMKYAVRKLDDQKFRS-EGETAYIRVRG 188 (241)
T ss_pred ceeeeeeehhhHHHHHHhhccccccC-cCcEeeEEecc
Confidence 89999999999999999999887644 34444444433
No 29
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=2.2e-19 Score=180.23 Aligned_cols=137 Identities=28% Similarity=0.532 Sum_probs=116.0
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
.+.-||||||||+.++||+-|..||+..|.|.+|+|+.|. |+
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e--------------------------------------~~ 44 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDE--------------------------------------LK 44 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehhh--------------------------------------hc
Confidence 4567999999999999999999999999999999998761 12
Q ss_pred eeccccccc---ccCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHh
Q 005357 128 VRYADGERE---RLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINAL 203 (700)
Q Consensus 128 V~~a~~~~~---~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~L 203 (700)
|.|+..... ........+||+.|..+++.++|++.|.+||+|.+++|++|. ++++|||+||.|-+.++|+.||..|
T Consensus 45 v~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~M 124 (321)
T KOG0148|consen 45 VNWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQM 124 (321)
T ss_pred cccccCcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHh
Confidence 222211111 111224579999999999999999999999999999999997 6899999999999999999999999
Q ss_pred cCceeccCCccceEEEecCCCC
Q 005357 204 NGIYTMRGCDQPLTVRFADPKR 225 (700)
Q Consensus 204 ng~~~~~g~gr~L~V~~a~~k~ 225 (700)
||..+ ++|.|+..|+..|.
T Consensus 125 nGqWl---G~R~IRTNWATRKp 143 (321)
T KOG0148|consen 125 NGQWL---GRRTIRTNWATRKP 143 (321)
T ss_pred CCeee---ccceeeccccccCc
Confidence 99998 79999999998775
No 30
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.80 E-value=2.2e-19 Score=200.17 Aligned_cols=169 Identities=25% Similarity=0.451 Sum_probs=140.6
Q ss_pred CceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCC---CcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 51 FAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG---QQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 51 ~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg---~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
.++|||.||.+++|.++|+++|..+|.|.+|.|...++.. .|.|||||+|.+.++|++|++.|++ ..++|.. |.
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqg-tvldGH~--l~ 591 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQG-TVLDGHK--LE 591 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcC-ceecCce--EE
Confidence 4449999999999999999999999999999888765421 3569999999999999999999977 5556655 44
Q ss_pred eecccc-------cccccCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeC-CCCCccceEEEEeCCHHHHHHH
Q 005357 128 VRYADG-------ERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAA 199 (700)
Q Consensus 128 V~~a~~-------~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d-~~g~srG~aFVeF~~~e~A~~A 199 (700)
|+++.. +........++|+|.||++..+..+|+.+|..||.|.+|+|.+. ..+.+||||||+|-+..+|.+|
T Consensus 592 lk~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA 671 (725)
T KOG0110|consen 592 LKISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNA 671 (725)
T ss_pred EEeccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHH
Confidence 444441 11111223568999999999999999999999999999999988 3456799999999999999999
Q ss_pred HHHhcCceeccCCccceEEEecCCCC
Q 005357 200 INALNGIYTMRGCDQPLTVRFADPKR 225 (700)
Q Consensus 200 i~~Lng~~~~~g~gr~L~V~~a~~k~ 225 (700)
+++|..+.+ .||+|.++|++...
T Consensus 672 ~~al~STHl---yGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 672 FDALGSTHL---YGRRLVLEWAKSDN 694 (725)
T ss_pred HHhhcccce---echhhheehhccch
Confidence 999998877 58999999998753
No 31
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=7.1e-19 Score=191.61 Aligned_cols=166 Identities=28% Similarity=0.497 Sum_probs=140.5
Q ss_pred CCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceee
Q 005357 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVR 129 (700)
Q Consensus 50 ~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~ 129 (700)
+.+.|||.||+.++|.++|.++|+.||+|++|+++.|.+ | ++|| ||+|+++++|++||+.+|+..+ .++. |.|.
T Consensus 75 d~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll-~~kk--i~vg 148 (369)
T KOG0123|consen 75 DPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLL-NGKK--IYVG 148 (369)
T ss_pred CCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCccc-CCCe--eEEe
Confidence 334499999999999999999999999999999999975 4 9999 9999999999999999988555 3333 4443
Q ss_pred ccccccccc------CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHh
Q 005357 130 YADGERERL------GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINAL 203 (700)
Q Consensus 130 ~a~~~~~~~------~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~L 203 (700)
....+.++. ...-..++|.++..++++++|.++|..||.|..+.|+.+..+.+++|+||+|++.++|..|++.|
T Consensus 149 ~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l 228 (369)
T KOG0123|consen 149 LFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETL 228 (369)
T ss_pred eccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhc
Confidence 332222221 22345799999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceeccCCccceEEEecCCC
Q 005357 204 NGIYTMRGCDQPLTVRFADPK 224 (700)
Q Consensus 204 ng~~~~~g~gr~L~V~~a~~k 224 (700)
++..+ ++..+.|..+..+
T Consensus 229 ~~~~~---~~~~~~V~~aqkk 246 (369)
T KOG0123|consen 229 NGKIF---GDKELYVGRAQKK 246 (369)
T ss_pred cCCcC---Cccceeecccccc
Confidence 99987 6788888877664
No 32
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.78 E-value=3.4e-18 Score=194.83 Aligned_cols=69 Identities=25% Similarity=0.491 Sum_probs=65.1
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccc
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQH 117 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~ 117 (700)
...++|||+||+.++++++|+++|+.||+|++|+|.+|+.++++||||||+|++.++|++||+.||+..
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~e 270 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFD 270 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCe
Confidence 356899999999999999999999999999999999999999999999999999999999999998654
No 33
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.74 E-value=3.9e-16 Score=162.54 Aligned_cols=173 Identities=18% Similarity=0.282 Sum_probs=133.2
Q ss_pred CCCCCCCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCC
Q 005357 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLP 120 (700)
Q Consensus 41 ~~~~~~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~ 120 (700)
...+.+....+-.|.|++|-..++|.||.|.++.||.|..+.++..++ .|.|+|+|.+.|++|+...-+..+..
T Consensus 21 ~~~dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r------~alvefedi~~akn~Vnfaa~n~i~i 94 (494)
T KOG1456|consen 21 DNADPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR------QALVEFEDIEGAKNCVNFAADNQIYI 94 (494)
T ss_pred cCCCCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccc------eeeeeeccccchhhheehhccCcccc
Confidence 455666778889999999999999999999999999999999888765 89999999999999997533322222
Q ss_pred Cccccceeecccccc-cccC----cccce--eeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCH
Q 005357 121 GGVGPIQVRYADGER-ERLG----AVEYK--LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHR 193 (700)
Q Consensus 121 g~~~~l~V~~a~~~~-~~~~----~~s~~--LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~ 193 (700)
+. ....+.++.... ++.. ...+. +.|-|--+.+|.+-|..++...|.|.+|.|+++ + ---|.|||++.
T Consensus 95 ~g-q~Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-n---gVQAmVEFdsv 169 (494)
T KOG1456|consen 95 AG-QQALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-N---GVQAMVEFDSV 169 (494)
T ss_pred cC-chhhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-c---ceeeEEeechh
Confidence 11 122333332211 1111 11223 334466677999999999999999999999987 2 23689999999
Q ss_pred HHHHHHHHHhcCceeccCCccceEEEecCCCC
Q 005357 194 DMALAAINALNGIYTMRGCDQPLTVRFADPKR 225 (700)
Q Consensus 194 e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~~k~ 225 (700)
+.|++|.++|||..|+.|| ..|+|+||++.+
T Consensus 170 ~~AqrAk~alNGADIYsGC-CTLKIeyAkP~r 200 (494)
T KOG1456|consen 170 EVAQRAKAALNGADIYSGC-CTLKIEYAKPTR 200 (494)
T ss_pred HHHHHHHhhcccccccccc-eeEEEEecCcce
Confidence 9999999999999999885 899999999975
No 34
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.73 E-value=2.4e-18 Score=187.60 Aligned_cols=171 Identities=25% Similarity=0.483 Sum_probs=145.8
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
..+.++||+--|...+++.||++||+.+|.|.+|+|+.|+.++++||.|||+|.|.+.+-.||. |.|..+++ .+|.
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg---~pv~ 251 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLG---VPVI 251 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccC---ceeE
Confidence 3457889999999999999999999999999999999999999999999999999999999994 77766642 4466
Q ss_pred eecccccccccC------------cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHH
Q 005357 128 VRYADGERERLG------------AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRD 194 (700)
Q Consensus 128 V~~a~~~~~~~~------------~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e 194 (700)
|.....++.+.. ..-.+|||+||..++++++|+.+|+.||.|+.|.+.+|. +|.++||+||+|.+.+
T Consensus 252 vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~ 331 (549)
T KOG0147|consen 252 VQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKE 331 (549)
T ss_pred ecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHH
Confidence 655544433321 111239999999999999999999999999999999997 8999999999999999
Q ss_pred HHHHHHHHhcCceeccCCccceEEEecCCCC
Q 005357 195 MALAAINALNGIYTMRGCDQPLTVRFADPKR 225 (700)
Q Consensus 195 ~A~~Ai~~Lng~~~~~g~gr~L~V~~a~~k~ 225 (700)
+|.+|++.|||-.+ -|+.|+|.....+-
T Consensus 332 ~ar~a~e~lngfel---AGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 332 DARKALEQLNGFEL---AGRLIKVSVVTERV 359 (549)
T ss_pred HHHHHHHHhcccee---cCceEEEEEeeeec
Confidence 99999999999555 68999998877653
No 35
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.70 E-value=1.6e-16 Score=151.81 Aligned_cols=86 Identities=27% Similarity=0.460 Sum_probs=78.7
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
...+++|||+||+++++|++|+++|++||.|++|+|++|. +++++|||||+|++.++|++|++.||+..+ +++.|+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i---~Gr~l~ 107 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKEL---NGRHIR 107 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE---CCEEEE
Confidence 3456789999999999999999999999999999999886 689999999999999999999999999988 799999
Q ss_pred EEecCCCCCC
Q 005357 218 VRFADPKRPR 227 (700)
Q Consensus 218 V~~a~~k~~r 227 (700)
|++++.+...
T Consensus 108 V~~a~~~~~~ 117 (144)
T PLN03134 108 VNPANDRPSA 117 (144)
T ss_pred EEeCCcCCCC
Confidence 9999876543
No 36
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.69 E-value=9.9e-16 Score=162.16 Aligned_cols=169 Identities=26% Similarity=0.461 Sum_probs=137.6
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHh-ccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFE-EHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~-~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
...|.+||.|||+++.+.||++||. +.|+|+.|.|+.|. +|++||||.|||+++|.++||++.|+. +.+.+ ++|.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk-~~~~G--R~l~ 117 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNK-YEVNG--RELV 117 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhh-ccccC--ceEE
Confidence 3456699999999999999999996 57899999999997 499999999999999999999999965 44433 3344
Q ss_pred eeccccc-----------------------------------------------cccc----------------------
Q 005357 128 VRYADGE-----------------------------------------------RERL---------------------- 138 (700)
Q Consensus 128 V~~a~~~-----------------------------------------------~~~~---------------------- 138 (700)
|+....+ +.+.
T Consensus 118 vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lf 197 (608)
T KOG4212|consen 118 VKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLF 197 (608)
T ss_pred EeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcc
Confidence 4322110 0000
Q ss_pred --------------CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhc
Q 005357 139 --------------GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALN 204 (700)
Q Consensus 139 --------------~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Ln 204 (700)
.....++||.||.+.+..+.|++.|.-.|.|+.|.+-.|+.+.++|||.|+|++.-+|..||..|+
T Consensus 198 gl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~ 277 (608)
T KOG4212|consen 198 GLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLD 277 (608)
T ss_pred cchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhc
Confidence 011246999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeccCCccceEEEecCCC
Q 005357 205 GIYTMRGCDQPLTVRFADPK 224 (700)
Q Consensus 205 g~~~~~g~gr~L~V~~a~~k 224 (700)
+.-. .+++.++++.+-.
T Consensus 278 ~~g~---~~~~~~~Rl~~~~ 294 (608)
T KOG4212|consen 278 RQGL---FDRRMTVRLDRIP 294 (608)
T ss_pred cCCC---ccccceeeccccc
Confidence 8655 4788888886543
No 37
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.68 E-value=5.7e-16 Score=151.99 Aligned_cols=160 Identities=19% Similarity=0.271 Sum_probs=127.6
Q ss_pred CCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeec-CCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccc
Q 005357 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKD-KKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVG 124 (700)
Q Consensus 46 ~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d-~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~ 124 (700)
.+....|||||.+||.|+...||+.+|..|--.+.+.|... +.....+-+|||.|.+..+|.+|+++||+..+......
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~s 108 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGS 108 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCc
Confidence 34566899999999999999999999999876676666543 33345678999999999999999999999888777767
Q ss_pred cceeeccccccccc------------------------------------------------------------------
Q 005357 125 PIQVRYADGERERL------------------------------------------------------------------ 138 (700)
Q Consensus 125 ~l~V~~a~~~~~~~------------------------------------------------------------------ 138 (700)
.|+++.++.+.++.
T Consensus 109 tLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~ 188 (284)
T KOG1457|consen 109 TLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDS 188 (284)
T ss_pred eeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhh
Confidence 77777664321110
Q ss_pred ------------------CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHH
Q 005357 139 ------------------GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAI 200 (700)
Q Consensus 139 ------------------~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai 200 (700)
...+.+|||.||..+++|++|+.+|+.|-....++|... ....+|||+|++++.|..|+
T Consensus 189 ~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~---~g~~vaf~~~~~~~~at~am 265 (284)
T KOG1457|consen 189 KAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR---GGMPVAFADFEEIEQATDAM 265 (284)
T ss_pred cCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC---CCcceEeecHHHHHHHHHHH
Confidence 011356999999999999999999999988777766433 23568999999999999999
Q ss_pred HHhcCcee
Q 005357 201 NALNGIYT 208 (700)
Q Consensus 201 ~~Lng~~~ 208 (700)
..|.|..+
T Consensus 266 ~~lqg~~~ 273 (284)
T KOG1457|consen 266 NHLQGNLL 273 (284)
T ss_pred HHhhccee
Confidence 99999876
No 38
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.64 E-value=5.6e-16 Score=169.21 Aligned_cols=167 Identities=24% Similarity=0.430 Sum_probs=126.6
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccccee
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQV 128 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V 128 (700)
.+.++||||||.++++|++|+.+|+.||.|..|.+.+|..||++|||+||+|.+.++|++|++.||+ ..+.|+..++.+
T Consensus 276 ~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lng-felAGr~ikV~~ 354 (549)
T KOG0147|consen 276 GPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNG-FELAGRLIKVSV 354 (549)
T ss_pred cchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhcc-ceecCceEEEEE
Confidence 3445599999999999999999999999999999999999999999999999999999999999988 666665433322
Q ss_pred eccccccc-------------cc-------------------------------------------------------C-
Q 005357 129 RYADGERE-------------RL-------------------------------------------------------G- 139 (700)
Q Consensus 129 ~~a~~~~~-------------~~-------------------------------------------------------~- 139 (700)
...+.+.. .. .
T Consensus 355 v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~ 434 (549)
T KOG0147|consen 355 VTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPAD 434 (549)
T ss_pred eeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccc
Confidence 11100000 00 0
Q ss_pred ------cccceeeccCCC---------cc-ccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHh
Q 005357 140 ------AVEYKLFVGSLN---------KQ-ATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINAL 203 (700)
Q Consensus 140 ------~~s~~LfV~nLp---------~~-~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~L 203 (700)
..+.++.+.|+= ++ --++||.+.+.+||+|..|.|.+. +-|+.||.|.+.++|..|+.+|
T Consensus 435 ~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n----s~g~VYvrc~s~~~A~~a~~al 510 (549)
T KOG0147|consen 435 ASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN----SAGCVYVRCPSAEAAGTAVKAL 510 (549)
T ss_pred cccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC----CCceEEEecCcHHHHHHHHHHH
Confidence 001122222221 11 024788899999999999887554 4489999999999999999999
Q ss_pred cCceeccCCccceEEEecCC
Q 005357 204 NGIYTMRGCDQPLTVRFADP 223 (700)
Q Consensus 204 ng~~~~~g~gr~L~V~~a~~ 223 (700)
||.+| .++.|.+.|-..
T Consensus 511 hgrWF---~gr~Ita~~~~~ 527 (549)
T KOG0147|consen 511 HGRWF---AGRMITAKYLPL 527 (549)
T ss_pred hhhhh---ccceeEEEEeeh
Confidence 99988 789999988654
No 39
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.64 E-value=1.1e-14 Score=157.47 Aligned_cols=163 Identities=20% Similarity=0.333 Sum_probs=122.8
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccccee
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQV 128 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V 128 (700)
...-.|-+.+||+.+|++||.+||+.++ |+++.+.+ .+|+..|-|||+|+++||+++|+++ +. ..+ ..+-|+|
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alkk-dR-~~m--g~RYIEV 80 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKK-DR-ESM--GHRYIEV 80 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHh-hH-HHh--CCceEEE
Confidence 3455688899999999999999999985 77755544 4799999999999999999999985 23 333 3344666
Q ss_pred ecccccccc---------cCcccceeeccCCCccccHHHHHHHhcCCCceeE-EEEeeCCCCCccceEEEEeCCHHHHHH
Q 005357 129 RYADGERER---------LGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED-VYLMRDELKQSRGCGFVKYSHRDMALA 198 (700)
Q Consensus 129 ~~a~~~~~~---------~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~-v~I~~d~~g~srG~aFVeF~~~e~A~~ 198 (700)
-.+..+... .......|.+.+||+.++++||.++|+-.-.|.+ |.++.+..+++.|.|||.|++.|.|++
T Consensus 81 f~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~ 160 (510)
T KOG4211|consen 81 FTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEI 160 (510)
T ss_pred EccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHH
Confidence 555322111 1134567999999999999999999998866666 445666678899999999999999999
Q ss_pred HHHHhcCceeccCCccceEEEecC
Q 005357 199 AINALNGIYTMRGCDQPLTVRFAD 222 (700)
Q Consensus 199 Ai~~Lng~~~~~g~gr~L~V~~a~ 222 (700)
|+..... .| +.|.|.|-.+.
T Consensus 161 Al~rhre-~i---GhRYIEvF~Ss 180 (510)
T KOG4211|consen 161 ALGRHRE-NI---GHRYIEVFRSS 180 (510)
T ss_pred HHHHHHH-hh---ccceEEeehhH
Confidence 9986432 33 45666665443
No 40
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=3.7e-16 Score=156.19 Aligned_cols=148 Identities=24% Similarity=0.471 Sum_probs=123.6
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceeecc
Q 005357 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYA 131 (700)
Q Consensus 52 ~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~~a 131 (700)
.+||||+|++.+.++||++||..||.|.+|.++. ||+||+|++..||++||..|+++.+. +.. +.++++
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~-~e~--~vve~~ 70 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELC-GER--LVVEHA 70 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceec-cee--eeeecc
Confidence 5799999999999999999999999999998754 59999999999999999999886553 333 777777
Q ss_pred ccccc------------------ccCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCH
Q 005357 132 DGERE------------------RLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHR 193 (700)
Q Consensus 132 ~~~~~------------------~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~ 193 (700)
..... ......+.|+|.++...+.+.+|.+.|+.+|.++...+ .++++||+|++.
T Consensus 71 r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~ 143 (216)
T KOG0106|consen 71 RGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQ 143 (216)
T ss_pred cccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------hccccceeehhh
Confidence 63200 01233577999999999999999999999999966655 256999999999
Q ss_pred HHHHHHHHHhcCceeccCCccceEEEe
Q 005357 194 DMALAAINALNGIYTMRGCDQPLTVRF 220 (700)
Q Consensus 194 e~A~~Ai~~Lng~~~~~g~gr~L~V~~ 220 (700)
++|.+|++.|++..+ .++.|.+..
T Consensus 144 ~da~ra~~~l~~~~~---~~~~l~~~~ 167 (216)
T KOG0106|consen 144 EDAKRALEKLDGKKL---NGRRISVEK 167 (216)
T ss_pred hhhhhcchhccchhh---cCceeeecc
Confidence 999999999999998 578888833
No 41
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.62 E-value=1.8e-15 Score=144.54 Aligned_cols=83 Identities=27% Similarity=0.503 Sum_probs=74.0
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
....++|||+||++++||+||+++|++||+|++|+|++|+.|++++|||||+|++.++|++||+.|++.. +++ +.|+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~-i~G--r~l~ 107 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKE-LNG--RHIR 107 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCE-ECC--EEEE
Confidence 3457899999999999999999999999999999999999999999999999999999999999998754 444 4577
Q ss_pred eecccc
Q 005357 128 VRYADG 133 (700)
Q Consensus 128 V~~a~~ 133 (700)
|+++..
T Consensus 108 V~~a~~ 113 (144)
T PLN03134 108 VNPAND 113 (144)
T ss_pred EEeCCc
Confidence 877653
No 42
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.62 E-value=9.1e-15 Score=145.00 Aligned_cols=162 Identities=20% Similarity=0.458 Sum_probs=131.6
Q ss_pred CCCceEEEeCCCCCCcHHHHHH----HHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccc
Q 005357 49 SSFAKLFVGSVPKTAREEDIRP----LFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVG 124 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~e----lF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~ 124 (700)
..+.||||.||...+..++|++ +|+.||.|++|...+ |.+.||-|||.|++.+.|-.|++.|+|-.+++ +
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFyg-K-- 80 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYG-K-- 80 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccC-c--
Confidence 4455999999999999999988 999999999998865 56799999999999999999999998855543 3
Q ss_pred cceeeccccccccc------------------------------------------------CcccceeeccCCCccccH
Q 005357 125 PIQVRYADGERERL------------------------------------------------GAVEYKLFVGSLNKQATE 156 (700)
Q Consensus 125 ~l~V~~a~~~~~~~------------------------------------------------~~~s~~LfV~nLp~~~te 156 (700)
.+++.|++.+.... ......||+.|||.+++.
T Consensus 81 ~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~ 160 (221)
T KOG4206|consen 81 PMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESES 160 (221)
T ss_pred hhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhH
Confidence 35555553221100 123457999999999999
Q ss_pred HHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEecC
Q 005357 157 KEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222 (700)
Q Consensus 157 edL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~ 222 (700)
+.|..+|+.|...++|+++.. .++.|||+|.+...|..|...+.+..+- +...+.|.+++
T Consensus 161 e~l~~lf~qf~g~keir~i~~----~~~iAfve~~~d~~a~~a~~~lq~~~it--~~~~m~i~~a~ 220 (221)
T KOG4206|consen 161 EMLSDLFEQFPGFKEIRLIPP----RSGIAFVEFLSDRQASAAQQALQGFKIT--KKNTMQITFAK 220 (221)
T ss_pred HHHHHHHhhCcccceeEeccC----CCceeEEecchhhhhHHHhhhhccceec--cCceEEecccC
Confidence 999999999999999998765 3679999999999999999999998773 36677777764
No 43
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=3.1e-14 Score=159.42 Aligned_cols=163 Identities=26% Similarity=0.399 Sum_probs=129.5
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
....+.|+|+|||..+..++|.+.|..||.|..|.+...-. -++|+|.+..+|++|++.|....+ ...++.
T Consensus 382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G~------~aiv~fl~p~eAr~Afrklaysr~---k~~ply 452 (725)
T KOG0110|consen 382 ERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGGT------GAIVEFLNPLEARKAFRKLAYSRF---KSAPLY 452 (725)
T ss_pred hhhcceeeeccCccccccHHHHHHhhcccccceeecCcccc------eeeeeecCccchHHHHHHhchhhh---ccCccc
Confidence 44568899999999999999999999999999995542211 489999999999999999865444 223343
Q ss_pred eecccccc-----------------------ccc-------------------------CcccceeeccCCCccccHHHH
Q 005357 128 VRYADGER-----------------------ERL-------------------------GAVEYKLFVGSLNKQATEKEV 159 (700)
Q Consensus 128 V~~a~~~~-----------------------~~~-------------------------~~~s~~LfV~nLp~~~teedL 159 (700)
+.|+.... ++. ....++|||.||+++++.++|
T Consensus 453 le~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l 532 (725)
T KOG0110|consen 453 LEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDL 532 (725)
T ss_pred cccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHH
Confidence 43331100 000 011234999999999999999
Q ss_pred HHHhcCCCceeEEEEeeCCCCC----ccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEecC
Q 005357 160 EEIFSPYGRVEDVYLMRDELKQ----SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222 (700)
Q Consensus 160 ~~~F~~fG~V~~v~I~~d~~g~----srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~ 222 (700)
..+|.+.|.|..+.|.+.++.. +.|||||+|.+.++|.+|++.|+|+.+ +|+.|.|+++.
T Consensus 533 ~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvl---dGH~l~lk~S~ 596 (725)
T KOG0110|consen 533 EDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVL---DGHKLELKISE 596 (725)
T ss_pred HHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCcee---cCceEEEEecc
Confidence 9999999999999988776543 559999999999999999999999998 89999999998
No 44
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=3.4e-14 Score=141.67 Aligned_cols=87 Identities=26% Similarity=0.456 Sum_probs=79.3
Q ss_pred CCCCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcc
Q 005357 44 DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGV 123 (700)
Q Consensus 44 ~~~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~ 123 (700)
+....++.++|-|.||+.+++|+||++||.+||.|..|.|.+|++||.+||||||.|.+.+||.+||+.|++.-+ ..
T Consensus 182 ~~R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gy---d~ 258 (270)
T KOG0122|consen 182 DMRERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGY---DN 258 (270)
T ss_pred ccccCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCccc---ce
Confidence 344456889999999999999999999999999999999999999999999999999999999999999988655 45
Q ss_pred ccceeecccc
Q 005357 124 GPIQVRYADG 133 (700)
Q Consensus 124 ~~l~V~~a~~ 133 (700)
+.|+|+|++.
T Consensus 259 LILrvEwskP 268 (270)
T KOG0122|consen 259 LILRVEWSKP 268 (270)
T ss_pred EEEEEEecCC
Confidence 7799999875
No 45
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=3e-14 Score=141.65 Aligned_cols=80 Identities=29% Similarity=0.586 Sum_probs=71.0
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
+...++||||+|++++.+|+|+++|+.||+|++.+|+.|+.||++|||+||.|+|.|.|++|++. -..+++|++-.++
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d--p~piIdGR~aNcn 86 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD--PNPIIDGRKANCN 86 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC--CCCcccccccccc
Confidence 44578999999999999999999999999999999999999999999999999999999999986 4577888764444
Q ss_pred ee
Q 005357 128 VR 129 (700)
Q Consensus 128 V~ 129 (700)
+.
T Consensus 87 lA 88 (247)
T KOG0149|consen 87 LA 88 (247)
T ss_pred hh
Confidence 33
No 46
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=1.1e-13 Score=153.13 Aligned_cols=208 Identities=19% Similarity=0.240 Sum_probs=149.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCC
Q 005357 11 PRSGMNYPLPQSLPVPQLSGQKRGF-SGRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKT 89 (700)
Q Consensus 11 ~g~G~~~~~P~~~p~pp~~g~~~~~-s~~~~~~~~~~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~T 89 (700)
.|.-..+.+|.+|-+.+...-.-+. +..+............+++||++|+..++++.++|+++.||.+...+++.|..+
T Consensus 248 ~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~ 327 (500)
T KOG0120|consen 248 EGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSAT 327 (500)
T ss_pred CCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccc
Confidence 3445677788888776644332211 111112333344566788999999999999999999999999999999999999
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceeecccccccc----------------------cCcccceeec
Q 005357 90 GQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERER----------------------LGAVEYKLFV 147 (700)
Q Consensus 90 g~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~~a~~~~~~----------------------~~~~s~~LfV 147 (700)
|.++||||.+|.+.-....|++.||+..+.+. . |.|..+...... .+..+..|.+
T Consensus 328 g~skg~af~ey~dpsvtd~A~agLnGm~lgd~-~--lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L 404 (500)
T KOG0120|consen 328 GNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDK-K--LVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCL 404 (500)
T ss_pred ccccceeeeeeeCCcchhhhhcccchhhhcCc-e--eEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhh
Confidence 99999999999999999999999998776432 2 333333211111 0112222333
Q ss_pred cCC------Ccc--cc--HHHHHHHhcCCCceeEEEEeeC-CC---CCccceEEEEeCCHHHHHHHHHHhcCceeccCCc
Q 005357 148 GSL------NKQ--AT--EKEVEEIFSPYGRVEDVYLMRD-EL---KQSRGCGFVKYSHRDMALAAINALNGIYTMRGCD 213 (700)
Q Consensus 148 ~nL------p~~--~t--eedL~~~F~~fG~V~~v~I~~d-~~---g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~g 213 (700)
.|+ -++ ++ .|||+..|.+||.|..|.|.++ .. ...-|..||||.+.+++++|.++|+|..+ ++
T Consensus 405 ~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF---~n 481 (500)
T KOG0120|consen 405 TNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKF---AN 481 (500)
T ss_pred hhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCcee---CC
Confidence 332 111 11 2567778899999999999888 32 34557789999999999999999999998 88
Q ss_pred cceEEEecCCC
Q 005357 214 QPLTVRFADPK 224 (700)
Q Consensus 214 r~L~V~~a~~k 224 (700)
|.|.+.|.+..
T Consensus 482 RtVvtsYydeD 492 (500)
T KOG0120|consen 482 RTVVASYYDED 492 (500)
T ss_pred cEEEEEecCHH
Confidence 99999988754
No 47
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.51 E-value=2.7e-13 Score=140.89 Aligned_cols=167 Identities=17% Similarity=0.291 Sum_probs=132.4
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCee--------EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccC
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVI--------EVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTL 119 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~--------~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~ 119 (700)
..-+..|||.|||.++|.+++.++|++||-|. .|+|.++.. |..||-|+|.|-..|+++.||+.|++..+.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccccc
Confidence 45577899999999999999999999999775 488888875 999999999999999999999999876653
Q ss_pred CCccccceeecccccc------------------------------------cccCcccceeeccCCC------cc---c
Q 005357 120 PGGVGPIQVRYADGER------------------------------------ERLGAVEYKLFVGSLN------KQ---A 154 (700)
Q Consensus 120 ~g~~~~l~V~~a~~~~------------------------------------~~~~~~s~~LfV~nLp------~~---~ 154 (700)
.+.|+|..++... ..+....++|.|.|+= .+ +
T Consensus 210 ---g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~ 286 (382)
T KOG1548|consen 210 ---GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLL 286 (382)
T ss_pred ---CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHH
Confidence 3457777663110 0011234567777761 11 1
Q ss_pred --cHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEecCCC
Q 005357 155 --TEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224 (700)
Q Consensus 155 --teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~~k 224 (700)
-.+||++.+++||.|..|.|... .+.|++-|.|.+.++|..||..|+|+.+ ++|.|...+.+.+
T Consensus 287 ~dlkedl~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~f---dgRql~A~i~DG~ 352 (382)
T KOG1548|consen 287 NDLKEDLTEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRWF---DGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcCeee---cceEEEEEEeCCc
Confidence 24678889999999999988744 3578999999999999999999999998 8999998877665
No 48
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=1.4e-13 Score=143.14 Aligned_cols=67 Identities=25% Similarity=0.534 Sum_probs=63.0
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALH 114 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~ 114 (700)
.....+|||..+..+.+|+||+..|+.||+|+.|.+.++..++..|||+||+|++...-.+||..+|
T Consensus 207 Ak~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMN 273 (544)
T KOG0124|consen 207 AKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN 273 (544)
T ss_pred HHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcc
Confidence 4568899999999999999999999999999999999999889999999999999999999998874
No 49
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.50 E-value=1.6e-13 Score=140.21 Aligned_cols=148 Identities=30% Similarity=0.507 Sum_probs=112.5
Q ss_pred CceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceeec
Q 005357 51 FAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRY 130 (700)
Q Consensus 51 ~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~~ 130 (700)
.++|||+||+.++|+++|+++|..||.|..|.+..|+.+++++|||||+|.+.++|.+|++.+++..+ .++ .|+|.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~-~~~--~~~v~~ 191 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKEL-EGR--PLRVQK 191 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeE-CCc--eeEeec
Confidence 69999999999999999999999999999999999998999999999999999999999999976444 443 355555
Q ss_pred cc----ccccc------------------cCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCC-CccceEE
Q 005357 131 AD----GERER------------------LGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGF 187 (700)
Q Consensus 131 a~----~~~~~------------------~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g-~srG~aF 187 (700)
.. ..... .......+++.+++..++++++..+|..+|.+..+.+...... ....+.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (306)
T COG0724 192 AQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSF 271 (306)
T ss_pred cccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccc
Confidence 32 11111 1223457999999999999999999999999977766655432 2333344
Q ss_pred EEeCCHHHHHHHHH
Q 005357 188 VKYSHRDMALAAIN 201 (700)
Q Consensus 188 VeF~~~e~A~~Ai~ 201 (700)
+.++....+...+.
T Consensus 272 ~~~~~~~~~~~~~~ 285 (306)
T COG0724 272 VGNEASKDALESNS 285 (306)
T ss_pred cchhHHHhhhhhhc
Confidence 44444444444443
No 50
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.47 E-value=1.2e-13 Score=149.95 Aligned_cols=83 Identities=31% Similarity=0.640 Sum_probs=75.2
Q ss_pred CCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceee
Q 005357 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVR 129 (700)
Q Consensus 50 ~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~ 129 (700)
..++|||+|||.++||+||+++|++||+|++|+|++|+.|+++||||||+|++.++|++||+.|++ .++++..+.|+|+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng-~~~~g~~~~l~V~ 270 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNN-VIPEGGSQPLTVR 270 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC-CccCCCceeEEEE
Confidence 467899999999999999999999999999999999999999999999999999999999999987 4555666778888
Q ss_pred cccc
Q 005357 130 YADG 133 (700)
Q Consensus 130 ~a~~ 133 (700)
+++.
T Consensus 271 ~a~~ 274 (346)
T TIGR01659 271 LAEE 274 (346)
T ss_pred ECCc
Confidence 7764
No 51
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=2.5e-13 Score=138.81 Aligned_cols=93 Identities=25% Similarity=0.447 Sum_probs=83.6
Q ss_pred cccccccCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceecc
Q 005357 132 DGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMR 210 (700)
Q Consensus 132 ~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~ 210 (700)
........+.-++|||+.|+++++|.+|+++|++||.|+.|.|++++ +|+++|||||+|++..+..+|+++.+|..|
T Consensus 91 ~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~I-- 168 (335)
T KOG0113|consen 91 NNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKI-- 168 (335)
T ss_pred CCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCcee--
Confidence 33444456677899999999999999999999999999999999996 799999999999999999999999999998
Q ss_pred CCccceEEEecCCCCCC
Q 005357 211 GCDQPLTVRFADPKRPR 227 (700)
Q Consensus 211 g~gr~L~V~~a~~k~~r 227 (700)
+++.|.|.+...+..+
T Consensus 169 -dgrri~VDvERgRTvk 184 (335)
T KOG0113|consen 169 -DGRRILVDVERGRTVK 184 (335)
T ss_pred -cCcEEEEEeccccccc
Confidence 8999999998877543
No 52
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=7.4e-14 Score=144.09 Aligned_cols=83 Identities=23% Similarity=0.335 Sum_probs=77.0
Q ss_pred cCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 138 LGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 138 ~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
.++..++|||+|||+.+.|-||+.+|++||+|.+|+|+.++.| +|||+||+|++.+||++|.++|||..+ .||+|+
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~V---EGRkIE 167 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVV---EGRKIE 167 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhccee---eceEEE
Confidence 3455689999999999999999999999999999999988655 799999999999999999999999999 799999
Q ss_pred EEecCCC
Q 005357 218 VRFADPK 224 (700)
Q Consensus 218 V~~a~~k 224 (700)
|+.+..+
T Consensus 168 Vn~ATar 174 (376)
T KOG0125|consen 168 VNNATAR 174 (376)
T ss_pred Eeccchh
Confidence 9999886
No 53
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=3.1e-13 Score=134.80 Aligned_cols=83 Identities=35% Similarity=0.545 Sum_probs=77.6
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
...+++|.|.||+++++|+||+++|.+||.|..|.|.+|+ +|.+||||||.|+++++|.+||+.|||.-+ +.--|+
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gy---d~LILr 262 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGY---DNLILR 262 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCccc---ceEEEE
Confidence 3467899999999999999999999999999999999997 699999999999999999999999999877 678899
Q ss_pred EEecCCC
Q 005357 218 VRFADPK 224 (700)
Q Consensus 218 V~~a~~k 224 (700)
|+|++++
T Consensus 263 vEwskP~ 269 (270)
T KOG0122|consen 263 VEWSKPS 269 (270)
T ss_pred EEecCCC
Confidence 9999986
No 54
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.45 E-value=2.8e-13 Score=111.66 Aligned_cols=64 Identities=25% Similarity=0.724 Sum_probs=60.4
Q ss_pred EEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhccccc
Q 005357 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHT 118 (700)
Q Consensus 54 LfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~ 118 (700)
|||+|||.++|+++|+++|+.||.|..|+++.+ .++..++||||+|++.++|++|++.|++..+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~ 64 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKI 64 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEE
Confidence 899999999999999999999999999999998 5789999999999999999999999988544
No 55
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=2.7e-13 Score=129.92 Aligned_cols=81 Identities=27% Similarity=0.411 Sum_probs=72.0
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~ 219 (700)
..+++|||+|||.++.+.||+++|.+||.|.+|++... -....||||+|+|..+|+.||..-+|..+ ++..|+|+
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r--~g~ppfafVeFEd~RDAeDAiygRdGYdy---dg~rLRVE 78 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR--PGPPPFAFVEFEDPRDAEDAIYGRDGYDY---DGCRLRVE 78 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC--CCCCCeeEEEecCccchhhhhhccccccc---CcceEEEE
Confidence 45789999999999999999999999999999988543 23457999999999999999999999988 89999999
Q ss_pred ecCCCC
Q 005357 220 FADPKR 225 (700)
Q Consensus 220 ~a~~k~ 225 (700)
|+..-+
T Consensus 79 fprggr 84 (241)
T KOG0105|consen 79 FPRGGR 84 (241)
T ss_pred eccCCC
Confidence 987654
No 56
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=2.9e-13 Score=128.97 Aligned_cols=79 Identities=29% Similarity=0.546 Sum_probs=73.2
Q ss_pred ccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEe
Q 005357 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220 (700)
Q Consensus 141 ~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~ 220 (700)
..++|||+||..++++.||+.+|.+||.|..|.|-+. ..|||||||+|..+|+.|+..|+|+.| |+..|+|++
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----PPGfAFVEFed~RDA~DAvr~LDG~~~---cG~r~rVE~ 81 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----PPGFAFVEFEDPRDAEDAVRYLDGKDI---CGSRIRVEL 81 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----CCCceEEeccCcccHHHHHhhcCCccc---cCceEEEEe
Confidence 3679999999999999999999999999999999875 678999999999999999999999999 899999999
Q ss_pred cCCCCC
Q 005357 221 ADPKRP 226 (700)
Q Consensus 221 a~~k~~ 226 (700)
.+.+..
T Consensus 82 S~G~~r 87 (195)
T KOG0107|consen 82 STGRPR 87 (195)
T ss_pred ecCCcc
Confidence 887644
No 57
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.43 E-value=8.9e-12 Score=130.40 Aligned_cols=171 Identities=20% Similarity=0.250 Sum_probs=128.5
Q ss_pred CCCCCceEEEeCCCC-CCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccc
Q 005357 47 DGSSFAKLFVGSVPK-TAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGP 125 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~-~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~ 125 (700)
.....+.++|.+|.- .++.+.|+.+|+.||.|++|++++.+. |.|.|++.|..++++|+..|++..++ |.++.
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~-----gtamVemgd~~aver~v~hLnn~~lf-G~kl~ 356 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP-----GTAMVEMGDAYAVERAVTHLNNIPLF-GGKLN 356 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc-----ceeEEEcCcHHHHHHHHHHhccCccc-cceEE
Confidence 345678999999994 578899999999999999999999765 79999999999999999999987664 44433
Q ss_pred ceeeccc---------------------------------ccccccCcccceeeccCCCccccHHHHHHHhcCCCc-eeE
Q 005357 126 IQVRYAD---------------------------------GERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGR-VED 171 (700)
Q Consensus 126 l~V~~a~---------------------------------~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~-V~~ 171 (700)
++++.-. ..+.++...++.|+..|.|..+||+.|.++|...+. ..+
T Consensus 357 v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~s 436 (494)
T KOG1456|consen 357 VCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTS 436 (494)
T ss_pred EeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcce
Confidence 3333210 012222345678999999999999999999987654 567
Q ss_pred EEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCcc-c--eEEEecCCC
Q 005357 172 VYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQ-P--LTVRFADPK 224 (700)
Q Consensus 172 v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr-~--L~V~~a~~k 224 (700)
|+|+.-++.++. -+++||++.++|..||..||...+..-++. + |++.|+.++
T Consensus 437 vkvFp~kserSs-sGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 437 VKVFPLKSERSS-SGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSK 491 (494)
T ss_pred EEeecccccccc-cceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeecccc
Confidence 777766654433 579999999999999999998776332222 3 444455443
No 58
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=1.8e-12 Score=141.32 Aligned_cols=169 Identities=22% Similarity=0.287 Sum_probs=122.2
Q ss_pred CCCCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCC--Cccc---EEEEEeCCHHHHHHHHHHhccccc
Q 005357 44 DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQG---CCFIKYATSEEADRAIRALHNQHT 118 (700)
Q Consensus 44 ~~~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg--~skG---~aFVeF~~~edA~~Ai~~L~g~~~ 118 (700)
......-+++||||+||++++|+.|...|..||.|.--+-.+....+ ..+| |+|+.|+++..+.+-|.+...
T Consensus 252 ~~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~--- 328 (520)
T KOG0129|consen 252 GYRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE--- 328 (520)
T ss_pred CCCccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---
Confidence 33445568999999999999999999999999986533322211111 3456 999999999998887765421
Q ss_pred CCCccccceeeccccc-------------------ccccCcccceeeccCCCccccHHHHHHHhc-CCCceeEEEEeeC-
Q 005357 119 LPGGVGPIQVRYADGE-------------------RERLGAVEYKLFVGSLNKQATEKEVEEIFS-PYGRVEDVYLMRD- 177 (700)
Q Consensus 119 ~~g~~~~l~V~~a~~~-------------------~~~~~~~s~~LfV~nLp~~~teedL~~~F~-~fG~V~~v~I~~d- 177 (700)
.....-++|+....+ ....-+..++|||++|+.-++.+||..+|+ -||.|..+-|-.|
T Consensus 329 -~~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~ 407 (520)
T KOG0129|consen 329 -GEGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDP 407 (520)
T ss_pred -cccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCc
Confidence 111112222222111 112235578999999999999999999999 5999999999999
Q ss_pred CCCCccceEEEEeCCHHHHHHHHHHh----cCceeccCCccceEEEe
Q 005357 178 ELKQSRGCGFVKYSHRDMALAAINAL----NGIYTMRGCDQPLTVRF 220 (700)
Q Consensus 178 ~~g~srG~aFVeF~~~e~A~~Ai~~L----ng~~~~~g~gr~L~V~~ 220 (700)
+.+..+|-|-|.|++..+-.+||.+- +...| +++|.|+-
T Consensus 408 k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~----~KRVEIkP 450 (520)
T KOG0129|consen 408 KLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDI----DKRVEIKP 450 (520)
T ss_pred ccCCCCCcceeeecccHHHHHHHhhheEEEecccc----ceeeeecc
Confidence 67999999999999999999999863 33333 55666653
No 59
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.41 E-value=5.7e-13 Score=109.79 Aligned_cols=70 Identities=31% Similarity=0.612 Sum_probs=65.8
Q ss_pred eeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 145 LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
|||+|||.++++++|+++|+.||.|+.+.+..+..+..+++|||+|++.++|++|++.|+|..+ +++.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~---~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKI---NGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEE---TTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEE---CccCcC
Confidence 7999999999999999999999999999999987888999999999999999999999999888 677764
No 60
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=3.3e-13 Score=122.37 Aligned_cols=84 Identities=23% Similarity=0.461 Sum_probs=74.6
Q ss_pred CCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccc
Q 005357 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPI 126 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l 126 (700)
....++|||||||++.++||.|.+||+++|+|+.|.+=.|+.+....|||||+|-+.+||+.|++.+++..+ ..+.|
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrL---ddr~i 108 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRL---DDRPI 108 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcc---cccce
Confidence 345789999999999999999999999999999999999999999999999999999999999999988665 33557
Q ss_pred eeecccc
Q 005357 127 QVRYADG 133 (700)
Q Consensus 127 ~V~~a~~ 133 (700)
++.|.-.
T Consensus 109 r~D~D~G 115 (153)
T KOG0121|consen 109 RIDWDAG 115 (153)
T ss_pred eeecccc
Confidence 7776643
No 61
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=5.4e-13 Score=127.16 Aligned_cols=79 Identities=22% Similarity=0.457 Sum_probs=67.5
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccccee
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQV 128 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V 128 (700)
...++||||||+.++++.||+.+|..||+|.+|+|.+++. |||||||++..||++|+..|+++.+ +| ..|+|
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP-----GfAFVEFed~RDA~DAvr~LDG~~~-cG--~r~rV 79 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP-----GFAFVEFEDPRDAEDAVRYLDGKDI-CG--SRIRV 79 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC-----CceEEeccCcccHHHHHhhcCCccc-cC--ceEEE
Confidence 4579999999999999999999999999999999988654 8999999999999999999988665 33 34666
Q ss_pred ecccccc
Q 005357 129 RYADGER 135 (700)
Q Consensus 129 ~~a~~~~ 135 (700)
+.+....
T Consensus 80 E~S~G~~ 86 (195)
T KOG0107|consen 80 ELSTGRP 86 (195)
T ss_pred EeecCCc
Confidence 6665443
No 62
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=6e-13 Score=132.43 Aligned_cols=79 Identities=23% Similarity=0.404 Sum_probs=71.8
Q ss_pred ccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEE
Q 005357 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219 (700)
Q Consensus 141 ~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~ 219 (700)
.-++|||++|+|++.+|+|+++|++||+|++..|+.|+ ++++|||+||+|.|.|+|.+|++..+-. | |||+..|+
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~pi-I---dGR~aNcn 86 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPI-I---DGRKANCN 86 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCc-c---cccccccc
Confidence 45689999999999999999999999999999999887 6999999999999999999999976653 4 79999999
Q ss_pred ecCC
Q 005357 220 FADP 223 (700)
Q Consensus 220 ~a~~ 223 (700)
+|.-
T Consensus 87 lA~l 90 (247)
T KOG0149|consen 87 LASL 90 (247)
T ss_pred hhhh
Confidence 9876
No 63
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.39 E-value=5.2e-13 Score=130.07 Aligned_cols=80 Identities=33% Similarity=0.537 Sum_probs=74.8
Q ss_pred cceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEe
Q 005357 142 EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220 (700)
Q Consensus 142 s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~ 220 (700)
...|.|.||.+.++.++|+.+|++||.|-+|.|.+|. ++.++|||||.|.+..+|+.|+++|+|.++ +++.|+|.+
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~l---dgRelrVq~ 89 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVL---DGRELRVQM 89 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceee---ccceeeehh
Confidence 4679999999999999999999999999999999998 689999999999999999999999999998 899999988
Q ss_pred cCCC
Q 005357 221 ADPK 224 (700)
Q Consensus 221 a~~k 224 (700)
|+=.
T Consensus 90 aryg 93 (256)
T KOG4207|consen 90 ARYG 93 (256)
T ss_pred hhcC
Confidence 8643
No 64
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.38 E-value=1.5e-12 Score=148.78 Aligned_cols=115 Identities=23% Similarity=0.265 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHhcccccCCCccccceeecccccc---cccCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC
Q 005357 102 TSEEADRAIRALHNQHTLPGGVGPIQVRYADGER---ERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE 178 (700)
Q Consensus 102 ~~edA~~Ai~~L~g~~~~~g~~~~l~V~~a~~~~---~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~ 178 (700)
-.|+|.+||.++++..+.. ......+..... .......++|||+||+++++|++|+++|++||.|.+|+|++|.
T Consensus 18 ~~~~a~~a~~~~~gy~~~~---~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~ 94 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQ---ENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDF 94 (578)
T ss_pred ccHHHHHHHHHhhCccccc---cCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECC
Confidence 3678889998887765522 222233322111 1112346899999999999999999999999999999999998
Q ss_pred CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEec
Q 005357 179 LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221 (700)
Q Consensus 179 ~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a 221 (700)
++.+||||||+|++.|+|++||+.||+..+. .++.|.|.++
T Consensus 95 sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~--~Gr~l~V~~S 135 (578)
T TIGR01648 95 SGQNRGYAFVTFCGKEEAKEAVKLLNNYEIR--PGRLLGVCIS 135 (578)
T ss_pred CCCccceEEEEeCCHHHHHHHHHHcCCCeec--CCcccccccc
Confidence 8999999999999999999999999998763 2455544433
No 65
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.38 E-value=5.7e-12 Score=134.00 Aligned_cols=73 Identities=21% Similarity=0.252 Sum_probs=66.5
Q ss_pred cceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEec
Q 005357 142 EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221 (700)
Q Consensus 142 s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a 221 (700)
.|+|||+|||.++|+..|++.|.+||+|.+++|+ +.++++| .|+|.+.++|++||..++|..+ ++|.|+|.|+
T Consensus 536 a~qIiirNlP~dfTWqmlrDKfre~G~v~yadim--e~GkskG--VVrF~s~edAEra~a~Mngs~l---~Gr~I~V~y~ 608 (608)
T KOG4212|consen 536 ACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM--ENGKSKG--VVRFFSPEDAERACALMNGSRL---DGRNIKVTYF 608 (608)
T ss_pred ccEEEEecCCccccHHHHHHHHHhccceehhhhh--ccCCccc--eEEecCHHHHHHHHHHhccCcc---cCceeeeeeC
Confidence 3679999999999999999999999999999995 4577776 7999999999999999999998 8999999874
No 66
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=1.8e-12 Score=132.56 Aligned_cols=84 Identities=25% Similarity=0.453 Sum_probs=74.0
Q ss_pred CCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccc
Q 005357 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPI 126 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l 126 (700)
..++.+||||+-|+++++|.+|++.|+.||+|+.|.|+.|+.||+++|||||+|+++.+...|.+..++ ..|+++.+.|
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG-~~Idgrri~V 175 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADG-IKIDGRRILV 175 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccC-ceecCcEEEE
Confidence 347899999999999999999999999999999999999999999999999999999999999999876 5556665444
Q ss_pred eeecc
Q 005357 127 QVRYA 131 (700)
Q Consensus 127 ~V~~a 131 (700)
.|+..
T Consensus 176 DvERg 180 (335)
T KOG0113|consen 176 DVERG 180 (335)
T ss_pred Eeccc
Confidence 44443
No 67
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.33 E-value=4.7e-12 Score=105.17 Aligned_cols=67 Identities=34% Similarity=0.727 Sum_probs=59.0
Q ss_pred EEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCc
Q 005357 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGG 122 (700)
Q Consensus 54 LfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~ 122 (700)
|||+|||.+++++||+++|+.||.|.+|++..++. +..+|+|||+|.+.++|++|++.+++ ..+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~-~~~~g~ 67 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNG-KEIDGR 67 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTT-EEETTE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCC-cEECCE
Confidence 79999999999999999999999999999999987 99999999999999999999998864 444443
No 68
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.32 E-value=1.8e-11 Score=129.65 Aligned_cols=159 Identities=17% Similarity=0.287 Sum_probs=128.1
Q ss_pred CceEEEeCCC-CCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceee
Q 005357 51 FAKLFVGSVP-KTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVR 129 (700)
Q Consensus 51 ~~tLfVgnLP-~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~ 129 (700)
++.|.|.||. ..+|.+.|+.+|.-||+|.+|+|+.++. --|+|.|.|...|..|++.|++.++++ ++|+|.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~g---k~lrvt 368 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYG---KKLRVT 368 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecC---ceEEEe
Confidence 6889999998 5599999999999999999999999865 379999999999999999998866654 347777
Q ss_pred cccccccc---------------------------------cCcccceeeccCCCccccHHHHHHHhcCCCcee-EEEEe
Q 005357 130 YADGERER---------------------------------LGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE-DVYLM 175 (700)
Q Consensus 130 ~a~~~~~~---------------------------------~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~-~v~I~ 175 (700)
+++..... ....+.+|++.|+|.+++||||++.|..-|... ..+++
T Consensus 369 ~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff 448 (492)
T KOG1190|consen 369 LSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF 448 (492)
T ss_pred eccCccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec
Confidence 76432110 012345799999999999999999999987654 44443
Q ss_pred eCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEecCC
Q 005357 176 RDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223 (700)
Q Consensus 176 ~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~~ 223 (700)
.+ .+-++++.+++.|+|..|+..++.+.+ +.+..|+|+|++.
T Consensus 449 ~k----d~kmal~q~~sveeA~~ali~~hnh~l--gen~hlRvSFSks 490 (492)
T KOG1190|consen 449 QK----DRKMALPQLESVEEAIQALIDLHNHYL--GENHHLRVSFSKS 490 (492)
T ss_pred CC----CcceeecccCChhHhhhhccccccccC--CCCceEEEEeecc
Confidence 32 355999999999999999999998876 3467899999875
No 69
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.32 E-value=2.4e-12 Score=142.01 Aligned_cols=82 Identities=30% Similarity=0.595 Sum_probs=75.4
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceeecc
Q 005357 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYA 131 (700)
Q Consensus 52 ~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~~a 131 (700)
+.|||||||++++||+|.++|+..|.|.+++++.|+.||+.|||+||+|.+.++|++|++.|++.++ ..++|+|.|+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~---~gr~l~v~~~ 95 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEF---NGRKLRVNYA 95 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCccc---CCceEEeecc
Confidence 8999999999999999999999999999999999999999999999999999999999999998776 4466888888
Q ss_pred ccccc
Q 005357 132 DGERE 136 (700)
Q Consensus 132 ~~~~~ 136 (700)
...+.
T Consensus 96 ~~~~~ 100 (435)
T KOG0108|consen 96 SNRKN 100 (435)
T ss_pred cccch
Confidence 65433
No 70
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=4.6e-12 Score=111.05 Aligned_cols=109 Identities=17% Similarity=0.263 Sum_probs=81.7
Q ss_pred CCCCCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCc
Q 005357 43 PDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGG 122 (700)
Q Consensus 43 ~~~~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~ 122 (700)
......+.++.|||+|||+++|.|++.++|.+||.|+.|+|=..+ ..+|.|||.|++..||++|++.|.+..+ .
T Consensus 10 ~~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~---~ 83 (124)
T KOG0114|consen 10 NIRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNV---D 83 (124)
T ss_pred CCCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhccccc---C
Confidence 344556778999999999999999999999999999999996654 5789999999999999999999988655 3
Q ss_pred cccceeecccccccccCcccceeeccCCCccccHHHHHHHhcCCC
Q 005357 123 VGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYG 167 (700)
Q Consensus 123 ~~~l~V~~a~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG 167 (700)
.+.|.|-+....+.... ......+++|..+-++||
T Consensus 84 ~ryl~vlyyq~~~~~~~----------~~~~k~~~~l~~~~~ky~ 118 (124)
T KOG0114|consen 84 NRYLVVLYYQPEDAFKL----------MDSRKAREELSILKEKYG 118 (124)
T ss_pred CceEEEEecCHHHHHHH----------HHhHHhhhHHHHHHHHhc
Confidence 34566766654433211 112234556666656665
No 71
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.32 E-value=4.8e-12 Score=133.93 Aligned_cols=166 Identities=20% Similarity=0.257 Sum_probs=124.4
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
...++.|.++|||.+++|+||.+++..||.|..+.+.+.++ -|||+|.|++.|...+..... ..-.-+.+.|.
T Consensus 25 ~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~-~~p~lr~~~~y 97 (492)
T KOG1190|consen 25 AEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTS-VTPVLRGQPIY 97 (492)
T ss_pred cCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccc-cCccccCccee
Confidence 45788999999999999999999999999999999988665 899999999998874443221 11111222233
Q ss_pred eecccccc--------------------------------------cccCcccceeeccCCCccccHHHHHHHhcCCCce
Q 005357 128 VRYADGER--------------------------------------ERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRV 169 (700)
Q Consensus 128 V~~a~~~~--------------------------------------~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V 169 (700)
|.++.... ......--+++|+++-+.++-|-|..+|++||.|
T Consensus 98 iq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~V 177 (492)
T KOG1190|consen 98 IQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFV 177 (492)
T ss_pred ehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhccee
Confidence 33321000 0000112368889999999999999999999999
Q ss_pred eEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEecCCC
Q 005357 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224 (700)
Q Consensus 170 ~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~~k 224 (700)
.+|.-+.+..+ =-|+|.|.|.+.|..|..+|+|..|+++| +.|+|.|++-.
T Consensus 178 lKIiTF~Knn~---FQALvQy~d~~sAq~AK~aLdGqnIyngc-CtLrId~Sklt 228 (492)
T KOG1190|consen 178 LKIITFTKNNG---FQALVQYTDAVSAQAAKLALDGQNIYNGC-CTLRIDFSKLT 228 (492)
T ss_pred EEEEEEecccc---hhhhhhccchhhHHHHHHhccCCcccCce-eEEEeehhhcc
Confidence 99877665332 14799999999999999999999998875 78888888764
No 72
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.30 E-value=8.6e-12 Score=103.60 Aligned_cols=70 Identities=33% Similarity=0.545 Sum_probs=63.4
Q ss_pred eeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 145 LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
|||+|||++++++||+++|+.||.|+.+.+.+++.+..+++|||+|.+.++|.+|++.+++..+ +|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~---~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEI---DGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEE---TTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEE---CCEEcC
Confidence 7999999999999999999999999999999987788999999999999999999999998877 677764
No 73
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=4.9e-12 Score=130.82 Aligned_cols=83 Identities=29% Similarity=0.503 Sum_probs=71.7
Q ss_pred CCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccc
Q 005357 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGP 125 (700)
Q Consensus 46 ~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~ 125 (700)
...+..++|+|.|||+...|-||+..|++||.|++|.|+.+. .-||||+||.|++.+||++|.++||+..+ .| |+
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~V-EG--Rk 165 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVV-EG--RK 165 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhccee-ec--eE
Confidence 334556899999999999999999999999999999999975 46999999999999999999999998555 44 45
Q ss_pred ceeecccc
Q 005357 126 IQVRYADG 133 (700)
Q Consensus 126 l~V~~a~~ 133 (700)
|+|+.+..
T Consensus 166 IEVn~ATa 173 (376)
T KOG0125|consen 166 IEVNNATA 173 (376)
T ss_pred EEEeccch
Confidence 77777653
No 74
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.28 E-value=9.5e-10 Score=124.51 Aligned_cols=106 Identities=27% Similarity=0.484 Sum_probs=85.2
Q ss_pred CCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceee
Q 005357 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVR 129 (700)
Q Consensus 50 ~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~ 129 (700)
-++|||||.|+.+++|.||.++|++||+|.+|+++..+ |||||++.+..||++|+.+|++..+ ..+.|+|.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R------~cAfI~M~~RqdA~kalqkl~n~kv---~~k~Iki~ 490 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR------GCAFIKMVRRQDAEKALQKLSNVKV---ADKTIKIA 490 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC------ceeEEEEeehhHHHHHHHHHhcccc---cceeeEEe
Confidence 38899999999999999999999999999999997754 6999999999999999999986555 34568999
Q ss_pred ccccccccc---CcccceeeccCCCccccHHHHHHHhc
Q 005357 130 YADGERERL---GAVEYKLFVGSLNKQATEKEVEEIFS 164 (700)
Q Consensus 130 ~a~~~~~~~---~~~s~~LfV~nLp~~~teedL~~~F~ 164 (700)
|+..+..+. ......|=|.-|+++.-.+||+.+++
T Consensus 491 Wa~g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 491 WAVGKGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred eeccCCcchhhhhhhhcccCeeEeehHhcCHHHHHhhh
Confidence 997765543 23334566777788755556666664
No 75
>PLN03213 repressor of silencing 3; Provisional
Probab=99.28 E-value=6.7e-12 Score=135.00 Aligned_cols=79 Identities=18% Similarity=0.364 Sum_probs=67.5
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCH--HHHHHHHHHhcccccCCCcccc
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATS--EEADRAIRALHNQHTLPGGVGP 125 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~--edA~~Ai~~L~g~~~~~g~~~~ 125 (700)
.....+||||||.++++++||+.+|..||.|.+|.|+ +.|| ||||||+|.+. +++++||+.|++..+ +.+.
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEW---KGR~ 79 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVW---KGGR 79 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCee---cCce
Confidence 3456899999999999999999999999999999999 4467 99999999987 789999999988666 3345
Q ss_pred ceeecccc
Q 005357 126 IQVRYADG 133 (700)
Q Consensus 126 l~V~~a~~ 133 (700)
|+|..++.
T Consensus 80 LKVNKAKP 87 (759)
T PLN03213 80 LRLEKAKE 87 (759)
T ss_pred eEEeeccH
Confidence 77877753
No 76
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.28 E-value=9.6e-12 Score=127.75 Aligned_cols=77 Identities=25% Similarity=0.322 Sum_probs=70.7
Q ss_pred cceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEec
Q 005357 142 EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221 (700)
Q Consensus 142 s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a 221 (700)
.++|||+||+++++++||+++|+.||+|++|+|.+++. .+|||||+|++.++|.+|+. |+|..+ +|+.|+|.++
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~All-LnG~~l---~gr~V~Vt~a 77 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETALL-LSGATI---VDQSVTITPA 77 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHH-hcCCee---CCceEEEEec
Confidence 46899999999999999999999999999999998853 57999999999999999996 999988 7999999998
Q ss_pred CCC
Q 005357 222 DPK 224 (700)
Q Consensus 222 ~~k 224 (700)
+.-
T Consensus 78 ~~~ 80 (260)
T PLN03120 78 EDY 80 (260)
T ss_pred cCC
Confidence 754
No 77
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.28 E-value=1.1e-11 Score=127.31 Aligned_cols=76 Identities=17% Similarity=0.324 Sum_probs=65.4
Q ss_pred CceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceeec
Q 005357 51 FAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRY 130 (700)
Q Consensus 51 ~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~~ 130 (700)
.++|||+||++++||+||+++|+.||+|++|+|++|+. .+|||||+|++.++|++||. |++..+ .+ +.|+|.+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l-~g--r~V~Vt~ 76 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATI-VD--QSVTITP 76 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCee-CC--ceEEEEe
Confidence 57999999999999999999999999999999998864 57999999999999999995 877555 44 4477776
Q ss_pred ccc
Q 005357 131 ADG 133 (700)
Q Consensus 131 a~~ 133 (700)
++.
T Consensus 77 a~~ 79 (260)
T PLN03120 77 AED 79 (260)
T ss_pred ccC
Confidence 653
No 78
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.25 E-value=2e-11 Score=128.18 Aligned_cols=170 Identities=15% Similarity=0.173 Sum_probs=124.3
Q ss_pred CCCCCceEEEeCCCCCCcHHHHHHHHhccC----CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCc
Q 005357 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHG----NVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGG 122 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~~vteedL~elF~~~G----~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~ 122 (700)
...+.-.|-+++||+++++.|+.+||.... .++.|.++... +|+..|-|||.|..+++|..|+.+- +..++.
T Consensus 157 sk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~kh--rq~iGq- 232 (508)
T KOG1365|consen 157 SKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKH--RQNIGQ- 232 (508)
T ss_pred CcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHH--HHHHhH-
Confidence 335566788899999999999999996332 34566555544 5899999999999999999999863 233222
Q ss_pred cccceeeccccc----------------------------c-cccCcccceeeccCCCccccHHHHHHHhcCCCc-eeE-
Q 005357 123 VGPIQVRYADGE----------------------------R-ERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGR-VED- 171 (700)
Q Consensus 123 ~~~l~V~~a~~~----------------------------~-~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~-V~~- 171 (700)
+-|++-.+... . ......+.+|.+++||++.+.|||.++|..|-. |..
T Consensus 233 -RYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~ 311 (508)
T KOG1365|consen 233 -RYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQ 311 (508)
T ss_pred -HHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccc
Confidence 22222211100 0 000122567999999999999999999998864 444
Q ss_pred -EEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEecCCC
Q 005357 172 -VYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224 (700)
Q Consensus 172 -v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~~k 224 (700)
|.++.+..|+..|-|||+|.+.|+|.+|..+++.+.. +.|.|+|--+..+
T Consensus 312 gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~m---k~RYiEvfp~S~e 362 (508)
T KOG1365|consen 312 GVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLM---KSRYIEVFPCSVE 362 (508)
T ss_pred eeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhc---ccceEEEeeccHH
Confidence 7888888899999999999999999999998887654 5677777655543
No 79
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=8.9e-12 Score=113.18 Aligned_cols=82 Identities=27% Similarity=0.436 Sum_probs=74.4
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCC-CCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDEL-KQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~-g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
...+++|||+||+..++||.|.++|+++|+|..|.+=.|+. ...=|||||+|.+.++|..|++-+++..+ +++.|+
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrL---ddr~ir 109 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRL---DDRPIR 109 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcc---ccccee
Confidence 34578999999999999999999999999999998877764 56779999999999999999999999988 899999
Q ss_pred EEecCC
Q 005357 218 VRFADP 223 (700)
Q Consensus 218 V~~a~~ 223 (700)
|.|...
T Consensus 110 ~D~D~G 115 (153)
T KOG0121|consen 110 IDWDAG 115 (153)
T ss_pred eecccc
Confidence 999754
No 80
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.24 E-value=8.1e-12 Score=121.83 Aligned_cols=82 Identities=27% Similarity=0.481 Sum_probs=72.0
Q ss_pred CCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccc
Q 005357 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPI 126 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l 126 (700)
+.+....|-|-||.+.++.++|+.+|++||.|.+|.|.+|+.|+.++|||||.|.+..||++|+++|++ .+++|+. |
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG-~~ldgRe--l 85 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDG-AVLDGRE--L 85 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcc-eeeccce--e
Confidence 355678899999999999999999999999999999999999999999999999999999999999977 5555543 4
Q ss_pred eeecc
Q 005357 127 QVRYA 131 (700)
Q Consensus 127 ~V~~a 131 (700)
+|..+
T Consensus 86 rVq~a 90 (256)
T KOG4207|consen 86 RVQMA 90 (256)
T ss_pred eehhh
Confidence 44444
No 81
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=7.2e-13 Score=126.83 Aligned_cols=82 Identities=28% Similarity=0.489 Sum_probs=72.8
Q ss_pred CCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccc
Q 005357 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPI 126 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l 126 (700)
.-.++.-|||||||++.||.||.-.|+.||+|++|.|++|+.||+|+||||+.|+|-.+.-.|+..||+..++ .+.|
T Consensus 31 ~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~---gRti 107 (219)
T KOG0126|consen 31 EYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKIL---GRTI 107 (219)
T ss_pred hcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceec---ceeE
Confidence 3467889999999999999999999999999999999999999999999999999999999999999886663 3446
Q ss_pred eeecc
Q 005357 127 QVRYA 131 (700)
Q Consensus 127 ~V~~a 131 (700)
+|..-
T Consensus 108 rVDHv 112 (219)
T KOG0126|consen 108 RVDHV 112 (219)
T ss_pred Eeeec
Confidence 66543
No 82
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=1.2e-11 Score=124.57 Aligned_cols=103 Identities=47% Similarity=0.762 Sum_probs=92.0
Q ss_pred ccceeecccccccccCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHh
Q 005357 124 GPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINAL 203 (700)
Q Consensus 124 ~~l~V~~a~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~L 203 (700)
+.|.|+.++.+.. ..++++|||+-|.+.-.|||++.+|..||+|++|.+.+..+|.+|||+||.|.+..+|.+||..|
T Consensus 3 rpiqvkpadsesr--g~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aL 80 (371)
T KOG0146|consen 3 RPIQVKPADSESR--GGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINAL 80 (371)
T ss_pred CCccccccccccC--CccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHh
Confidence 4567776665432 34678999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceeccCCccceEEEecCCCCCCC
Q 005357 204 NGIYTMRGCDQPLTVRFADPKRPRP 228 (700)
Q Consensus 204 ng~~~~~g~gr~L~V~~a~~k~~r~ 228 (700)
||...+-|....|.|+|++.+++|.
T Consensus 81 HgSqTmpGASSSLVVK~ADTdkER~ 105 (371)
T KOG0146|consen 81 HGSQTMPGASSSLVVKFADTDKERT 105 (371)
T ss_pred cccccCCCCccceEEEeccchHHHH
Confidence 9999999889999999999887654
No 83
>smart00362 RRM_2 RNA recognition motif.
Probab=99.21 E-value=5e-11 Score=97.03 Aligned_cols=64 Identities=36% Similarity=0.728 Sum_probs=59.0
Q ss_pred eEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhccccc
Q 005357 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHT 118 (700)
Q Consensus 53 tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~ 118 (700)
+|||+|||.++++++|+++|+.||.|.+|++..++ +.++|+|||+|.+.++|++|++.+++..+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~ 64 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKL 64 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEE
Confidence 59999999999999999999999999999999876 77889999999999999999999876444
No 84
>smart00362 RRM_2 RNA recognition motif.
Probab=99.21 E-value=5.2e-11 Score=96.95 Aligned_cols=72 Identities=39% Similarity=0.662 Sum_probs=65.7
Q ss_pred eeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEE
Q 005357 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219 (700)
Q Consensus 144 ~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~ 219 (700)
+|||+||+.++++++|+++|+.||.|.++++..++ +.++|+|||+|.+.++|.+|++.+++..+ +++.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~---~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKL---GGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEE---CCEEEeeC
Confidence 58999999999999999999999999999998876 77889999999999999999999999877 67777763
No 85
>PLN03213 repressor of silencing 3; Provisional
Probab=99.19 E-value=4.1e-11 Score=129.02 Aligned_cols=79 Identities=23% Similarity=0.356 Sum_probs=71.6
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCH--HHHHHHHHHhcCceeccCCccceE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHR--DMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~--e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
....+|||+||.++++++||+.+|..||.|.+|.|+++ +| ||||||+|.+. +++.+||..|||..+ .|+.|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-TG--RGFAFVEMssdddaEeeKAISaLNGAEW---KGR~LK 81 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVW---KGGRLR 81 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-cC--CceEEEEecCCcHHHHHHHHHHhcCCee---cCceeE
Confidence 34579999999999999999999999999999999943 55 99999999976 689999999999998 799999
Q ss_pred EEecCCC
Q 005357 218 VRFADPK 224 (700)
Q Consensus 218 V~~a~~k 224 (700)
|..|++.
T Consensus 82 VNKAKP~ 88 (759)
T PLN03213 82 LEKAKEH 88 (759)
T ss_pred EeeccHH
Confidence 9999874
No 86
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.18 E-value=1.9e-09 Score=117.24 Aligned_cols=148 Identities=22% Similarity=0.306 Sum_probs=107.6
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeE-EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIE-VALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~-i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
.....|-+++||+.|||+||.+||+-.-.|.+ |.++.+.. +++.|-|||.|++.|+|++|+..-. +.+.. +-|+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r-gR~tGEAfVqF~sqe~ae~Al~rhr--e~iGh--RYIE 175 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR-GRPTGEAFVQFESQESAEIALGRHR--ENIGH--RYIE 175 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC-CCcccceEEEecCHHHHHHHHHHHH--Hhhcc--ceEE
Confidence 34568999999999999999999998866665 55666665 7799999999999999999997521 11110 0111
Q ss_pred eeccc-----------------------------------cc-------------------------------------c
Q 005357 128 VRYAD-----------------------------------GE-------------------------------------R 135 (700)
Q Consensus 128 V~~a~-----------------------------------~~-------------------------------------~ 135 (700)
|..+. .. +
T Consensus 176 vF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~ 255 (510)
T KOG4211|consen 176 VFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGR 255 (510)
T ss_pred eehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccccccccccccc
Confidence 11000 00 0
Q ss_pred ccc-------------------CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHH
Q 005357 136 ERL-------------------GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMA 196 (700)
Q Consensus 136 ~~~-------------------~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A 196 (700)
... ......++..+|++..++.+|.++|+..-.+ .|.|....+++..|-|+|+|++.++|
T Consensus 256 ~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGEAdveF~t~eda 334 (510)
T KOG4211|consen 256 DPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGEADVEFATGEDA 334 (510)
T ss_pred ccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCcceeecccchhh
Confidence 000 0011347788999999999999999876444 77777778899999999999999999
Q ss_pred HHHHHH
Q 005357 197 LAAINA 202 (700)
Q Consensus 197 ~~Ai~~ 202 (700)
..|+.+
T Consensus 335 v~Amsk 340 (510)
T KOG4211|consen 335 VGAMGK 340 (510)
T ss_pred Hhhhcc
Confidence 999874
No 87
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=8.2e-11 Score=126.06 Aligned_cols=81 Identities=26% Similarity=0.402 Sum_probs=72.3
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
...|.|||+.||.++.|+||.-+|++.|+|-+++|+.|. +|.+||||||.|.+.++|++||+.||++.|- .|+.|.|
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir--~GK~igv 158 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR--PGKLLGV 158 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCcccc--CCCEeEE
Confidence 446889999999999999999999999999999999995 7999999999999999999999999999875 3566666
Q ss_pred EecC
Q 005357 219 RFAD 222 (700)
Q Consensus 219 ~~a~ 222 (700)
+.+.
T Consensus 159 c~Sv 162 (506)
T KOG0117|consen 159 CVSV 162 (506)
T ss_pred EEee
Confidence 5543
No 88
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=2e-11 Score=119.90 Aligned_cols=86 Identities=30% Similarity=0.555 Sum_probs=79.4
Q ss_pred ccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEE
Q 005357 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219 (700)
Q Consensus 141 ~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~ 219 (700)
..++|||++|.++++|.-|...|..||.|++|.|..|- +.+.|||+||+|+..|+|.+||+.+|+..+ +||.|+|.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL---~GrtirVN 85 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESEL---FGRTIRVN 85 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhh---cceeEEEe
Confidence 46799999999999999999999999999999999885 689999999999999999999999999998 69999999
Q ss_pred ecCCCCCCCC
Q 005357 220 FADPKRPRPG 229 (700)
Q Consensus 220 ~a~~k~~r~~ 229 (700)
++++.+.+.+
T Consensus 86 ~AkP~kikeg 95 (298)
T KOG0111|consen 86 LAKPEKIKEG 95 (298)
T ss_pred ecCCccccCC
Confidence 9999765543
No 89
>smart00360 RRM RNA recognition motif.
Probab=99.17 E-value=8.9e-11 Score=95.09 Aligned_cols=63 Identities=35% Similarity=0.756 Sum_probs=58.5
Q ss_pred EeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhccccc
Q 005357 56 VGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHT 118 (700)
Q Consensus 56 VgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~ 118 (700)
|+||+.++++++|+++|+.||.|.+|++..++.++.++|||||+|.+.++|++|++.+++..+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~ 63 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKEL 63 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCee
Confidence 689999999999999999999999999999988899999999999999999999999875443
No 90
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=9.1e-11 Score=102.98 Aligned_cols=81 Identities=26% Similarity=0.425 Sum_probs=72.4
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~ 219 (700)
..++.|||.|||+++|.||+.++|.+||.|..|+|=.. ...+|.|||.|+|+.+|.+|++.|+|..+ +++.|.|-
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~--k~TrGTAFVVYedi~dAk~A~dhlsg~n~---~~ryl~vl 90 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT--KETRGTAFVVYEDIFDAKKACDHLSGYNV---DNRYLVVL 90 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCc--cCcCceEEEEehHhhhHHHHHHHhccccc---CCceEEEE
Confidence 34568999999999999999999999999999998544 44689999999999999999999999988 89999999
Q ss_pred ecCCCC
Q 005357 220 FADPKR 225 (700)
Q Consensus 220 ~a~~k~ 225 (700)
+-.+.+
T Consensus 91 yyq~~~ 96 (124)
T KOG0114|consen 91 YYQPED 96 (124)
T ss_pred ecCHHH
Confidence 877653
No 91
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.15 E-value=1.3e-10 Score=117.85 Aligned_cols=75 Identities=13% Similarity=0.212 Sum_probs=63.7
Q ss_pred CCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceee
Q 005357 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVR 129 (700)
Q Consensus 50 ~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~ 129 (700)
...+|||+||++.+||+||++||+.||+|++|+|++|. +.++||||+|+++++|+.|+. |++..+++- .|+|.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~---~I~It 76 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQ---RVCIT 76 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCc---eEEEE
Confidence 34799999999999999999999999999999999984 456899999999999999994 888666433 35665
Q ss_pred cc
Q 005357 130 YA 131 (700)
Q Consensus 130 ~a 131 (700)
..
T Consensus 77 ~~ 78 (243)
T PLN03121 77 RW 78 (243)
T ss_pred eC
Confidence 43
No 92
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.13 E-value=7.4e-11 Score=124.69 Aligned_cols=176 Identities=20% Similarity=0.299 Sum_probs=139.3
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccccee
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQV 128 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V 128 (700)
...+++|++++..++.+.++..+|..+|.+..+.+........++|++.|.|+..+.+..|+... ..+++.+.....-+
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s-~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEES-GSKVLDGNKGEKDL 164 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhh-hccccccccccCcc
Confidence 46889999999999999999999999999888888887778899999999999999999999864 43444443332222
Q ss_pred ecccc-----cc-cccCcccceee-ccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHH
Q 005357 129 RYADG-----ER-ERLGAVEYKLF-VGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAI 200 (700)
Q Consensus 129 ~~a~~-----~~-~~~~~~s~~Lf-V~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai 200 (700)
..... .. ........++| |++|+.++++++|+++|..+|.|..+++..+. .+.++||+||+|.+...+..++
T Consensus 165 ~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~ 244 (285)
T KOG4210|consen 165 NTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLAL 244 (285)
T ss_pred cccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHh
Confidence 22221 11 11123334555 99999999999999999999999999998876 5899999999999999999999
Q ss_pred HHhcCceeccCCccceEEEecCCCCCCCC
Q 005357 201 NALNGIYTMRGCDQPLTVRFADPKRPRPG 229 (700)
Q Consensus 201 ~~Lng~~~~~g~gr~L~V~~a~~k~~r~~ 229 (700)
.. ....+ .++.+++.+.+++.....
T Consensus 245 ~~-~~~~~---~~~~~~~~~~~~~~~~~~ 269 (285)
T KOG4210|consen 245 ND-QTRSI---GGRPLRLEEDEPRPKSDG 269 (285)
T ss_pred hc-ccCcc---cCcccccccCCCCccccc
Confidence 87 66666 578899999888755433
No 93
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.13 E-value=2.1e-10 Score=117.14 Aligned_cols=79 Identities=39% Similarity=0.628 Sum_probs=74.8
Q ss_pred cceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEe
Q 005357 142 EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220 (700)
Q Consensus 142 s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~ 220 (700)
.++|||+||+.++++++|+++|..||.|..|.|..++ ++.++|||||+|.+.++|..|++.+++..+ .++.|+|.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~---~~~~~~v~~ 191 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKEL---EGRPLRVQK 191 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeE---CCceeEeec
Confidence 5899999999999999999999999999999999995 799999999999999999999999999988 799999999
Q ss_pred cCC
Q 005357 221 ADP 223 (700)
Q Consensus 221 a~~ 223 (700)
+..
T Consensus 192 ~~~ 194 (306)
T COG0724 192 AQP 194 (306)
T ss_pred ccc
Confidence 654
No 94
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.12 E-value=1.7e-10 Score=116.84 Aligned_cols=76 Identities=26% Similarity=0.348 Sum_probs=68.4
Q ss_pred cceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEec
Q 005357 142 EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221 (700)
Q Consensus 142 s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a 221 (700)
.++|||+||++.+|++||+++|+.||+|++|+|+++ +..++||||+|++.++|+.|+. |+|..+ .++.|.|...
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAll-LnGa~l---~d~~I~It~~ 78 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS--GEYACTAYVTFKDAYALETAVL-LSGATI---VDQRVCITRW 78 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC--CCcceEEEEEECCHHHHHHHHh-cCCCee---CCceEEEEeC
Confidence 468999999999999999999999999999999988 4556899999999999999995 999998 6888988876
Q ss_pred CC
Q 005357 222 DP 223 (700)
Q Consensus 222 ~~ 223 (700)
..
T Consensus 79 ~~ 80 (243)
T PLN03121 79 GQ 80 (243)
T ss_pred cc
Confidence 54
No 95
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.12 E-value=9.1e-11 Score=107.46 Aligned_cols=87 Identities=29% Similarity=0.483 Sum_probs=78.6
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
+.....|||.++.+.++|+||.+.|..||+|+++.+..|. +|..+||++|+|++.+.|.+|++++||..++ +..|.
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll---~q~v~ 145 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELL---GQNVS 145 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhh---CCcee
Confidence 4456789999999999999999999999999999998886 7999999999999999999999999999985 78899
Q ss_pred EEecCCCCCCC
Q 005357 218 VRFADPKRPRP 228 (700)
Q Consensus 218 V~~a~~k~~r~ 228 (700)
|.|+-.+...+
T Consensus 146 VDw~Fv~gp~~ 156 (170)
T KOG0130|consen 146 VDWCFVKGPER 156 (170)
T ss_pred EEEEEecCCcc
Confidence 99987765433
No 96
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.12 E-value=3.2e-10 Score=92.75 Aligned_cols=74 Identities=41% Similarity=0.699 Sum_probs=68.2
Q ss_pred eeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEe
Q 005357 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220 (700)
Q Consensus 144 ~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~ 220 (700)
+|+|+||+..+++++|+++|+.||.|..+.+..+..+..+++|||+|.+.++|..|++.+++..+ +++.+.|++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~---~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKEL---GGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeE---CCeEEEEeC
Confidence 48999999999999999999999999999999887767899999999999999999999999876 688888864
No 97
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=1.6e-10 Score=105.88 Aligned_cols=84 Identities=30% Similarity=0.409 Sum_probs=74.6
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
..+.-.|||.++..+++|+||.+.|..||+|++|.|-.|++||-.||||+|+|++.++|.+||+.+|+..++.- .|.
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q---~v~ 145 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQ---NVS 145 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCC---cee
Confidence 34566799999999999999999999999999999999999999999999999999999999999998777543 377
Q ss_pred eeccccc
Q 005357 128 VRYADGE 134 (700)
Q Consensus 128 V~~a~~~ 134 (700)
|.|+-.+
T Consensus 146 VDw~Fv~ 152 (170)
T KOG0130|consen 146 VDWCFVK 152 (170)
T ss_pred EEEEEec
Confidence 7776433
No 98
>smart00360 RRM RNA recognition motif.
Probab=99.10 E-value=3.1e-10 Score=91.92 Aligned_cols=70 Identities=40% Similarity=0.673 Sum_probs=63.5
Q ss_pred ccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEE
Q 005357 147 VGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219 (700)
Q Consensus 147 V~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~ 219 (700)
|+||+..+++++|+++|+.||.|.++.|..+. ++.++|+|||+|.+.++|.+|++.+++..+ +++.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~---~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKEL---DGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCee---CCcEEEeC
Confidence 67999999999999999999999999998876 478899999999999999999999998877 67888763
No 99
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.08 E-value=5.7e-10 Score=91.23 Aligned_cols=65 Identities=37% Similarity=0.753 Sum_probs=59.3
Q ss_pred eEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhccccc
Q 005357 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHT 118 (700)
Q Consensus 53 tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~ 118 (700)
+|||+|||.++++++|+++|+.||.|.++.+..++.+ ..+|+|||+|.+.++|..|++.+++..+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~ 65 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKEL 65 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeE
Confidence 5899999999999999999999999999999988764 7789999999999999999999877543
No 100
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.06 E-value=1.8e-10 Score=127.36 Aligned_cols=85 Identities=27% Similarity=0.451 Sum_probs=79.6
Q ss_pred ceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEec
Q 005357 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221 (700)
Q Consensus 143 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a 221 (700)
+.|||+|+++++++++|.++|+..|.|.+++++.|. +|+.|||+||+|.+.++|.+|++.|||..+ .+|+|+|.|+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~---~gr~l~v~~~ 95 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEF---NGRKLRVNYA 95 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCccc---CCceEEeecc
Confidence 789999999999999999999999999999999997 689999999999999999999999999998 7999999999
Q ss_pred CCCCCCCCC
Q 005357 222 DPKRPRPGD 230 (700)
Q Consensus 222 ~~k~~r~~~ 230 (700)
..++.+.+.
T Consensus 96 ~~~~~~~~~ 104 (435)
T KOG0108|consen 96 SNRKNAERS 104 (435)
T ss_pred cccchhHHH
Confidence 887765544
No 101
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.03 E-value=3.8e-10 Score=113.50 Aligned_cols=169 Identities=18% Similarity=0.390 Sum_probs=129.6
Q ss_pred CCCceEEEeCCCCCCcHHH-H--HHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccc
Q 005357 49 SSFAKLFVGSVPKTAREED-I--RPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGP 125 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteed-L--~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~ 125 (700)
...-.+|++++-.++..+- | .-.|+.|-.++..++++++. +..++++|+.|+....-.++-.+-++++. +...
T Consensus 94 P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p-~~~~~~~~~~~k~s~a~~k~~~~~~~Kki---~~~~ 169 (290)
T KOG0226|consen 94 PAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRP-QPIRPEAFESFKASDALLKAETEKEKKKI---GKPP 169 (290)
T ss_pred cccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCC-CccCcccccCcchhhhhhhhccccccccc---cCcc
Confidence 3455677888877776655 3 67788888888888888764 77889999999887776666554333332 2233
Q ss_pred ceee----cccccccccCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHH
Q 005357 126 IQVR----YADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAI 200 (700)
Q Consensus 126 l~V~----~a~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai 200 (700)
+++. |.+.........+.+||.+.|.-+++++.|.+.|.+|-.....++++|+ +++++||+||.|.+.+++.+|+
T Consensus 170 VR~a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAm 249 (290)
T KOG0226|consen 170 VRLAAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAM 249 (290)
T ss_pred eeeccccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHH
Confidence 3332 3333333445677899999999999999999999999888888888887 7999999999999999999999
Q ss_pred HHhcCceeccCCccceEEEecCCC
Q 005357 201 NALNGIYTMRGCDQPLTVRFADPK 224 (700)
Q Consensus 201 ~~Lng~~~~~g~gr~L~V~~a~~k 224 (700)
++++|+++ +.+.|+++...-+
T Consensus 250 rem~gkyV---gsrpiklRkS~wk 270 (290)
T KOG0226|consen 250 REMNGKYV---GSRPIKLRKSEWK 270 (290)
T ss_pred Hhhccccc---ccchhHhhhhhHH
Confidence 99999998 7888887765544
No 102
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=2e-10 Score=112.91 Aligned_cols=86 Identities=21% Similarity=0.438 Sum_probs=77.2
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccccee
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQV 128 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V 128 (700)
...|+||||+|..+|||.-|...|=.||.|.+|.+..|..+.+.|||+||+|+-.|||..||..||+..++ | +.|+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~-G--rtirV 84 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELF-G--RTIRV 84 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhc-c--eeEEE
Confidence 34689999999999999999999999999999999999999999999999999999999999999886663 3 45889
Q ss_pred ecccccccc
Q 005357 129 RYADGERER 137 (700)
Q Consensus 129 ~~a~~~~~~ 137 (700)
.+++..+..
T Consensus 85 N~AkP~kik 93 (298)
T KOG0111|consen 85 NLAKPEKIK 93 (298)
T ss_pred eecCCcccc
Confidence 998876554
No 103
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.02 E-value=1.7e-10 Score=113.55 Aligned_cols=140 Identities=22% Similarity=0.294 Sum_probs=115.6
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
.+..+||||+||...|+||-|.|+|-.-|+|.+|.|..++. ++.| ||||+|+++-.+.-|++.+|+..++... ++
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e---~q 80 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDE---EQ 80 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccch---hh
Confidence 35678999999999999999999999999999999887764 6667 9999999999999999988876553322 22
Q ss_pred eecccccccccCcccceeeccC----CCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHh
Q 005357 128 VRYADGERERLGAVEYKLFVGS----LNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINAL 203 (700)
Q Consensus 128 V~~a~~~~~~~~~~s~~LfV~n----Lp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~L 203 (700)
.+++.++ |...++++.+++.|+.-+.++.+++..+.+++++.++||.+-...+.-.++...
T Consensus 81 ---------------~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y 145 (267)
T KOG4454|consen 81 ---------------RTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLY 145 (267)
T ss_pred ---------------cccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhh
Confidence 2344444 677889999999999999999999999988999999999998777777777665
Q ss_pred cCce
Q 005357 204 NGIY 207 (700)
Q Consensus 204 ng~~ 207 (700)
.+..
T Consensus 146 ~~l~ 149 (267)
T KOG4454|consen 146 QGLE 149 (267)
T ss_pred cccC
Confidence 5543
No 104
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.01 E-value=3.1e-11 Score=137.87 Aligned_cols=150 Identities=18% Similarity=0.289 Sum_probs=131.1
Q ss_pred CCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceee
Q 005357 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVR 129 (700)
Q Consensus 50 ~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~ 129 (700)
..+++||.||+..+.++||.++|..+|.|..+.+...+++++.||+||++|.+.+++.+||... ..+++.
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~-d~~~~g--------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFR-DSCFFG--------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhh-hhhhhh---------
Confidence 4578999999999999999999999999888888777778999999999999999999999854 334322
Q ss_pred cccccccccCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceec
Q 005357 130 YADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTM 209 (700)
Q Consensus 130 ~a~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~ 209 (700)
...|||.|+++..|.++|+.+|.++|.+++++++..+.|+.+|.+||.|.+..++.+++...+...+
T Consensus 736 ------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~- 802 (881)
T KOG0128|consen 736 ------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGK- 802 (881)
T ss_pred ------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhh-
Confidence 3478999999999999999999999999999999888999999999999999999999988887766
Q ss_pred cCCccceEEEecCCC
Q 005357 210 RGCDQPLTVRFADPK 224 (700)
Q Consensus 210 ~g~gr~L~V~~a~~k 224 (700)
..+.+.|...++.
T Consensus 803 --rE~~~~v~vsnp~ 815 (881)
T KOG0128|consen 803 --RENNGEVQVSNPE 815 (881)
T ss_pred --hhcCccccccCCc
Confidence 5666777776663
No 105
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.01 E-value=1.3e-09 Score=86.89 Aligned_cols=56 Identities=32% Similarity=0.612 Sum_probs=50.7
Q ss_pred HHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEec
Q 005357 159 VEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221 (700)
Q Consensus 159 L~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a 221 (700)
|+++|++||+|+++.+..++ +++|||+|++.++|.+|++.||+..+ +|+.|+|+|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~---~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQF---NGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEE---TTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEE---CCcEEEEEEC
Confidence 68999999999999998763 58999999999999999999999998 7899999986
No 106
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.01 E-value=5.8e-11 Score=113.91 Aligned_cols=81 Identities=27% Similarity=0.504 Sum_probs=74.7
Q ss_pred ccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEE
Q 005357 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219 (700)
Q Consensus 141 ~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~ 219 (700)
.+.-|||+||++++||.||.-+|+.||+|.+|.+++|+ +|+++||||+.|+|-.+..-|++.|||..+ .||.|+|.
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki---~gRtirVD 110 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKI---LGRTIRVD 110 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCcee---cceeEEee
Confidence 35679999999999999999999999999999999997 699999999999999999999999999988 68999998
Q ss_pred ecCCC
Q 005357 220 FADPK 224 (700)
Q Consensus 220 ~a~~k 224 (700)
.....
T Consensus 111 Hv~~Y 115 (219)
T KOG0126|consen 111 HVSNY 115 (219)
T ss_pred ecccc
Confidence 76543
No 107
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=5.7e-10 Score=124.07 Aligned_cols=165 Identities=27% Similarity=0.465 Sum_probs=129.4
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhcc-----------C-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEH-----------G-NVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHN 115 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~-----------G-~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g 115 (700)
....+++||++|+..++++.+..+|..- | .|+.|.+-..+ .||||+|.+.++|..|+.. ++
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~------nfa~ie~~s~~~at~~~~~-~~ 244 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEK------NFAFIEFRSISEATEAMAL-DG 244 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccc------cceeEEecCCCchhhhhcc-cc
Confidence 3457889999999999999999999753 2 47777775555 4999999999999999863 33
Q ss_pred cccCCCccccceeeccccc---------------------ccccCcccceeeccCCCccccHHHHHHHhcCCCceeEEEE
Q 005357 116 QHTLPGGVGPIQVRYADGE---------------------RERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYL 174 (700)
Q Consensus 116 ~~~~~g~~~~l~V~~a~~~---------------------~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I 174 (700)
.++.|. .+++...... ....-...+++||++|+..++++.++++...||.+....+
T Consensus 245 -~~f~g~--~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~l 321 (500)
T KOG0120|consen 245 -IIFEGR--PLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRL 321 (500)
T ss_pred -hhhCCC--CceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhhee
Confidence 333332 2332222110 0111233568999999999999999999999999999999
Q ss_pred eeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEecCCCC
Q 005357 175 MRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKR 225 (700)
Q Consensus 175 ~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~~k~ 225 (700)
+.+. +|.++||||.+|-+......|++.|||..+ .++.|.|..|....
T Consensus 322 v~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~l---gd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 322 VKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQL---GDKKLVVQRAIVGA 370 (500)
T ss_pred ecccccccccceeeeeeeCCcchhhhhcccchhhh---cCceeEeehhhccc
Confidence 9886 489999999999999999999999999988 68999999887653
No 108
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.95 E-value=5e-10 Score=128.63 Aligned_cols=168 Identities=20% Similarity=0.286 Sum_probs=137.3
Q ss_pred CCCCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcc
Q 005357 44 DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGV 123 (700)
Q Consensus 44 ~~~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~ 123 (700)
..++...+++||+|||+..+++.+|+..|..+|.|.+|.|..-+. +...-|+||.|.+.+.+-.|+-++.+..+..+ .
T Consensus 365 ~~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g-~ 442 (975)
T KOG0112|consen 365 KLDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNG-T 442 (975)
T ss_pred cccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccC-c
Confidence 445567899999999999999999999999999999999876532 55566999999999999999988866555333 2
Q ss_pred ccceeecccccccccCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHh
Q 005357 124 GPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINAL 203 (700)
Q Consensus 124 ~~l~V~~a~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~L 203 (700)
+++.+... .....+.+||++|..++....|...|..||.|..|.+-.. --|++|.|++...+.+|++.+
T Consensus 443 --~r~glG~~----kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-----q~yayi~yes~~~aq~a~~~~ 511 (975)
T KOG0112|consen 443 --HRIGLGQP----KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-----QPYAYIQYESPPAAQAATHDM 511 (975)
T ss_pred --cccccccc----ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-----CcceeeecccCccchhhHHHH
Confidence 34443322 3456789999999999999999999999999999877433 348999999999999999999
Q ss_pred cCceeccCCccceEEEecCCCC
Q 005357 204 NGIYTMRGCDQPLTVRFADPKR 225 (700)
Q Consensus 204 ng~~~~~g~gr~L~V~~a~~k~ 225 (700)
.|..+ .+..+.|+|.|+++..
T Consensus 512 rgap~-G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 512 RGAPL-GGPPRRLRVDLASPPG 532 (975)
T ss_pred hcCcC-CCCCcccccccccCCC
Confidence 99766 4457889999998753
No 109
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.95 E-value=6.7e-10 Score=113.52 Aligned_cols=72 Identities=32% Similarity=0.570 Sum_probs=68.6
Q ss_pred ceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEecC
Q 005357 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222 (700)
Q Consensus 143 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~ 222 (700)
.+|||+|||+++++.+|+.+|++||+|.+|+|+++ ||||..+|...|..||..|||..+ ++..|+|+.++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYtL---hg~nInVeaSk 72 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTL---HGVNINVEASK 72 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhccccee---cceEEEEEecc
Confidence 47999999999999999999999999999999977 999999999999999999999998 88999999998
Q ss_pred CC
Q 005357 223 PK 224 (700)
Q Consensus 223 ~k 224 (700)
.|
T Consensus 73 sK 74 (346)
T KOG0109|consen 73 SK 74 (346)
T ss_pred cc
Confidence 87
No 110
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.93 E-value=4.2e-09 Score=115.92 Aligned_cols=82 Identities=23% Similarity=0.311 Sum_probs=68.4
Q ss_pred ceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEec
Q 005357 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221 (700)
Q Consensus 143 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a 221 (700)
..|||+|||.+++.++|+++|..||.|+...|.... .++..+||||+|++.+++..||++- .+..++++|.|+..
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As----p~~ig~~kl~Veek 364 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS----PLEIGGRKLNVEEK 364 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC----ccccCCeeEEEEec
Confidence 359999999999999999999999999999887765 3444499999999999999999875 22337899999998
Q ss_pred CCCCCCC
Q 005357 222 DPKRPRP 228 (700)
Q Consensus 222 ~~k~~r~ 228 (700)
++..+..
T Consensus 365 ~~~~~g~ 371 (419)
T KOG0116|consen 365 RPGFRGN 371 (419)
T ss_pred ccccccc
Confidence 8765443
No 111
>smart00361 RRM_1 RNA recognition motif.
Probab=98.92 E-value=2.6e-09 Score=89.33 Aligned_cols=54 Identities=28% Similarity=0.444 Sum_probs=48.0
Q ss_pred HHHHHHHHh----ccCCeeEEE-EeecCCC--CCcccEEEEEeCCHHHHHHHHHHhccccc
Q 005357 65 EEDIRPLFE----EHGNVIEVA-LIKDKKT--GQQQGCCFIKYATSEEADRAIRALHNQHT 118 (700)
Q Consensus 65 eedL~elF~----~~G~V~~i~-i~~d~~T--g~skG~aFVeF~~~edA~~Ai~~L~g~~~ 118 (700)
++||+++|+ .||.|.+|. |+.++.+ +.++|||||+|++.++|.+|++.||+..+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~ 62 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYF 62 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 678888888 999999996 7777766 89999999999999999999999988554
No 112
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=2.3e-09 Score=111.95 Aligned_cols=82 Identities=23% Similarity=0.462 Sum_probs=73.3
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
..+...|||..|.+-+|.|||+-+|+.||.|++|.|++|++||.+.-||||+|++.+++++|+-+|++ .+++. ++|.
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdN-vLIDD--rRIH 312 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDN-VLIDD--RRIH 312 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcc-eeecc--ceEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999976 55544 4477
Q ss_pred eeccc
Q 005357 128 VRYAD 132 (700)
Q Consensus 128 V~~a~ 132 (700)
|.++.
T Consensus 313 VDFSQ 317 (479)
T KOG0415|consen 313 VDFSQ 317 (479)
T ss_pred eehhh
Confidence 77764
No 113
>smart00361 RRM_1 RNA recognition motif.
Probab=98.87 E-value=5.1e-09 Score=87.56 Aligned_cols=61 Identities=25% Similarity=0.424 Sum_probs=52.4
Q ss_pred HHHHHHHhc----CCCceeEEE-EeeCC-C--CCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEE
Q 005357 156 EKEVEEIFS----PYGRVEDVY-LMRDE-L--KQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219 (700)
Q Consensus 156 eedL~~~F~----~fG~V~~v~-I~~d~-~--g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~ 219 (700)
++||+++|+ +||.|.+|. |..++ + +.++|||||+|++.++|.+|++.|||+.+ +++.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~---~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYF---DGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEE---CCEEEEeC
Confidence 567888887 999999995 55554 4 78999999999999999999999999988 78888763
No 114
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.87 E-value=1.2e-07 Score=107.88 Aligned_cols=82 Identities=27% Similarity=0.595 Sum_probs=74.4
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
+..+++|||+.|+.++++.||.++|+.||+|++|.++.. ||||||++.++.+|.+|+.+|++..+ .++.|+|
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-----R~cAfI~M~~RqdA~kalqkl~n~kv---~~k~Iki 489 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-----RGCAFIKMVRRQDAEKALQKLSNVKV---ADKTIKI 489 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-----CceeEEEEeehhHHHHHHHHHhcccc---cceeeEE
Confidence 355789999999999999999999999999999988754 89999999999999999999998777 6899999
Q ss_pred EecCCCCCCC
Q 005357 219 RFADPKRPRP 228 (700)
Q Consensus 219 ~~a~~k~~r~ 228 (700)
.|+..+..+.
T Consensus 490 ~Wa~g~G~ks 499 (894)
T KOG0132|consen 490 AWAVGKGPKS 499 (894)
T ss_pred eeeccCCcch
Confidence 9999876554
No 115
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.84 E-value=3.2e-09 Score=102.23 Aligned_cols=79 Identities=27% Similarity=0.452 Sum_probs=73.0
Q ss_pred ccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEE
Q 005357 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219 (700)
Q Consensus 141 ~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~ 219 (700)
...+|||+||+..++++-|+++|-..|.|.++.|.+|+ +...+|||||||.++|+|+-||+-||...+ .||+|+|+
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkL---YgrpIrv~ 84 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKL---YGRPIRVN 84 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHh---cCceeEEE
Confidence 35699999999999999999999999999999999998 467999999999999999999999997666 58999999
Q ss_pred ecC
Q 005357 220 FAD 222 (700)
Q Consensus 220 ~a~ 222 (700)
.+.
T Consensus 85 kas 87 (203)
T KOG0131|consen 85 KAS 87 (203)
T ss_pred ecc
Confidence 998
No 116
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.83 E-value=7.9e-09 Score=101.56 Aligned_cols=75 Identities=24% Similarity=0.415 Sum_probs=66.4
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhcc-CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcc
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEH-GNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGV 123 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~-G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~ 123 (700)
.....-+||..|+..+.+.+|+.+|..| |.|+.+++.++++||.+||||||+|+++|.|+-|-+.||++ ++.++.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNY-Ll~e~l 121 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNY-LLMEHL 121 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhh-hhhhhe
Confidence 4456779999999999999999999998 78888998899999999999999999999999999999884 444443
No 117
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.81 E-value=9.7e-09 Score=81.77 Aligned_cols=56 Identities=34% Similarity=0.704 Sum_probs=46.5
Q ss_pred HHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceeecc
Q 005357 68 IRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYA 131 (700)
Q Consensus 68 L~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~~a 131 (700)
|+++|++||+|++|++.+++ +++|||+|.+.++|++|++.||+..+ .| +.|+|+|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~-~g--~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQF-NG--RPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEE-TT--EEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEE-CC--cEEEEEEC
Confidence 78999999999999997764 57999999999999999999988665 44 45777764
No 118
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.74 E-value=2.1e-08 Score=105.00 Aligned_cols=77 Identities=22% Similarity=0.528 Sum_probs=69.3
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~ 219 (700)
..-.+|||++|.+.++|.||+++|..||+|+.|.++.. +++|||+|.++++|+.|.+++....++ +|.+|+|.
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI--~G~Rl~i~ 298 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVI--NGFRLKIK 298 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeee--cceEEEEE
Confidence 34578999999999999999999999999999999876 679999999999999999988775544 78999999
Q ss_pred ecCC
Q 005357 220 FADP 223 (700)
Q Consensus 220 ~a~~ 223 (700)
|+++
T Consensus 299 Wg~~ 302 (377)
T KOG0153|consen 299 WGRP 302 (377)
T ss_pred eCCC
Confidence 9998
No 119
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.74 E-value=2.6e-08 Score=105.99 Aligned_cols=117 Identities=25% Similarity=0.413 Sum_probs=85.7
Q ss_pred CCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceee
Q 005357 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVR 129 (700)
Q Consensus 50 ~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~ 129 (700)
...+||||+|+.+++|++|+++|+.||.|.++.++.|..+.+.+||+||.|++++++++++.. ..+.+.++ .++|+
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~--~f~~~~gk--~vevk 171 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ--KFHDFNGK--KVEVK 171 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc--ceeeecCc--eeeEe
Confidence 456999999999999999999999999999999999999999999999999999999999864 23444444 46666
Q ss_pred cccccccccCccc---ceeeccCCCccccHHHHHHHhcCCCcee
Q 005357 130 YADGERERLGAVE---YKLFVGSLNKQATEKEVEEIFSPYGRVE 170 (700)
Q Consensus 130 ~a~~~~~~~~~~s---~~LfV~nLp~~~teedL~~~F~~fG~V~ 170 (700)
.+..+........ ...+..++....+.-.|..+|..|+.+.
T Consensus 172 rA~pk~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~g~~~~~ 215 (311)
T KOG4205|consen 172 RAIPKEVMQSTKSSVSTRGKGNNLGNGRTGFFLKKYFKGYGPVG 215 (311)
T ss_pred eccchhhccccccccccccccccccccccccccchhccccCccc
Confidence 6654433322211 1222223444444556777788777654
No 120
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.4e-08 Score=106.10 Aligned_cols=82 Identities=24% Similarity=0.441 Sum_probs=76.5
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
....+.|||-.|+.-++++||+-+|++||.|..|.|++|. +|.+-.||||+|++.+++++|+-+|++..| ++++|.
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLI---DDrRIH 312 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLI---DDRRIH 312 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceee---ccceEE
Confidence 4567899999999999999999999999999999999996 689999999999999999999999999888 899999
Q ss_pred EEecCC
Q 005357 218 VRFADP 223 (700)
Q Consensus 218 V~~a~~ 223 (700)
|.|+..
T Consensus 313 VDFSQS 318 (479)
T KOG0415|consen 313 VDFSQS 318 (479)
T ss_pred eehhhh
Confidence 999765
No 121
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.68 E-value=1.8e-08 Score=101.59 Aligned_cols=81 Identities=21% Similarity=0.473 Sum_probs=72.4
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
+.+..+||+|.|..+++++.|.+.|.+|-.....++++|++||+++||+||-|.+.+|+..|+++++++++ +.++|+
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyV---gsrpik 263 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYV---GSRPIK 263 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccc---ccchhH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999777 556666
Q ss_pred eecc
Q 005357 128 VRYA 131 (700)
Q Consensus 128 V~~a 131 (700)
++.+
T Consensus 264 lRkS 267 (290)
T KOG0226|consen 264 LRKS 267 (290)
T ss_pred hhhh
Confidence 5543
No 122
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.64 E-value=6.8e-08 Score=96.47 Aligned_cols=79 Identities=25% Similarity=0.544 Sum_probs=71.7
Q ss_pred ceeeccCCCccccHHHHHH----HhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 143 YKLFVGSLNKQATEKEVEE----IFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 143 ~~LfV~nLp~~~teedL~~----~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
.+|||.||++.+..+||++ +|+.||+|.+|..++ +.+.||-|||.|.+.+.|..|+++|+|..+ -|+.++|
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k--t~KmRGQA~VvFk~~~~As~A~r~l~gfpF---ygK~mri 84 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK--TPKMRGQAFVVFKETEAASAALRALQGFPF---YGKPMRI 84 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC--CCCccCceEEEecChhHHHHHHHHhcCCcc---cCchhhe
Confidence 3999999999999999988 999999999988764 467899999999999999999999999888 4899999
Q ss_pred EecCCCCC
Q 005357 219 RFADPKRP 226 (700)
Q Consensus 219 ~~a~~k~~ 226 (700)
.||+.+..
T Consensus 85 qyA~s~sd 92 (221)
T KOG4206|consen 85 QYAKSDSD 92 (221)
T ss_pred ecccCccc
Confidence 99998753
No 123
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.61 E-value=1e-07 Score=100.06 Aligned_cols=83 Identities=23% Similarity=0.510 Sum_probs=71.7
Q ss_pred CCCCCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCc
Q 005357 43 PDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGG 122 (700)
Q Consensus 43 ~~~~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~ 122 (700)
.+.-++....+|||++|-..++|.||++.|..||+|++|+++..+ ++|||+|.+.+.|++|.+++-++.+++|.
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~ 293 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGF 293 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecce
Confidence 344456678999999999999999999999999999999998865 49999999999999999988776777664
Q ss_pred cccceeecccc
Q 005357 123 VGPIQVRYADG 133 (700)
Q Consensus 123 ~~~l~V~~a~~ 133 (700)
+|+|.|...
T Consensus 294 --Rl~i~Wg~~ 302 (377)
T KOG0153|consen 294 --RLKIKWGRP 302 (377)
T ss_pred --EEEEEeCCC
Confidence 588889887
No 124
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.59 E-value=1.3e-07 Score=103.91 Aligned_cols=82 Identities=26% Similarity=0.420 Sum_probs=70.1
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
..-.++|||.+|.-.+...||+.||++||.|+..+|+.+..+--.++|+||.+.+.++|.+||+.||...+ .|+ .|.
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTEL-HGr--mIS 478 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTEL-HGR--MIS 478 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhh-cce--eee
Confidence 34578999999999999999999999999999999999988878899999999999999999999986444 443 355
Q ss_pred eeccc
Q 005357 128 VRYAD 132 (700)
Q Consensus 128 V~~a~ 132 (700)
|+.++
T Consensus 479 VEkaK 483 (940)
T KOG4661|consen 479 VEKAK 483 (940)
T ss_pred eeecc
Confidence 55553
No 125
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.58 E-value=7.3e-08 Score=106.64 Aligned_cols=158 Identities=18% Similarity=0.217 Sum_probs=102.7
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
..+.++|+|-|||..|++++|+++|+.||+|++|+..+. .+|.+||+|-|..+|++|+++|++.++...+ ++
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~---~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKR---IK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhh---hc
Confidence 557899999999999999999999999999999776544 4589999999999999999999876653222 22
Q ss_pred e-eccccccc-------------------ccCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEE
Q 005357 128 V-RYADGERE-------------------RLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGF 187 (700)
Q Consensus 128 V-~~a~~~~~-------------------~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aF 187 (700)
. ..+....- ..+-....+|+- |....+..-++..|..+|.++. +. ++.-+---|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~----~~~~~hq~~ 217 (549)
T KOG4660|consen 144 RPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RE----TPLLNHQRF 217 (549)
T ss_pred CCCcccccchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-cc----ccchhhhhh
Confidence 1 11100000 000111234443 7777777666777777777655 21 111122567
Q ss_pred EEeCCHHHHHHHHHHhcCceeccCCccceEEEecCC
Q 005357 188 VKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223 (700)
Q Consensus 188 VeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~~ 223 (700)
++|.+..++..+.... |..+ .+....+.+..+
T Consensus 218 ~~~~~~~s~a~~~~~~-G~~~---s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 218 VEFADNRSYAFSEPRG-GFLI---SNSSGVITFSGP 249 (549)
T ss_pred hhhccccchhhcccCC-ceec---CCCCceEEecCC
Confidence 8888888885555422 3333 345566666655
No 126
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.56 E-value=2.5e-07 Score=91.74 Aligned_cols=89 Identities=24% Similarity=0.369 Sum_probs=74.1
Q ss_pred ccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCC--CCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDEL--KQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 141 ~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~--g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
.-++|||.+||.++...||+.+|+.|-.-+...|..... ..++-+|||+|.+..+|.+|+++|||..|--.++..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 357999999999999999999999998777766654432 346679999999999999999999999885567889999
Q ss_pred EecCCCCCCCC
Q 005357 219 RFADPKRPRPG 229 (700)
Q Consensus 219 ~~a~~k~~r~~ 229 (700)
++++....+.+
T Consensus 113 ElAKSNtK~kr 123 (284)
T KOG1457|consen 113 ELAKSNTKRKR 123 (284)
T ss_pred eehhcCccccc
Confidence 99987654443
No 127
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=98.54 E-value=3.2e-08 Score=69.44 Aligned_cols=28 Identities=54% Similarity=1.119 Sum_probs=26.1
Q ss_pred CCceeeeCCC-CCcccccCCcCcccccCC
Q 005357 559 SSWTEHTSPD-GYKYYYNCVTGVSKWEKP 586 (700)
Q Consensus 559 ~~w~e~~~~~-g~~yyyn~~t~~s~w~kp 586 (700)
..|+++.+++ |+.||||.+|++|+||+|
T Consensus 3 ~gW~~~~~~~~g~~YY~N~~t~~s~W~~P 31 (31)
T PF00397_consen 3 PGWEEYFDPDSGRPYYYNHETGESQWERP 31 (31)
T ss_dssp TTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred cCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence 4599999987 999999999999999998
No 128
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.51 E-value=2.2e-07 Score=91.54 Aligned_cols=82 Identities=22% Similarity=0.398 Sum_probs=72.0
Q ss_pred cccceeeccCCCccccHHHHHHHhcCC-CceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPY-GRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~f-G~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
.....++|..++.-+.+.+|..+|..| |.|..+++-+.+ +|.++|||||+|++.|.|..|-+.||++.+ .++.|.
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl---~e~lL~ 123 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLL---MEHLLE 123 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhh---hhheee
Confidence 345679999999999999999999998 677888885654 899999999999999999999999999887 478999
Q ss_pred EEecCCC
Q 005357 218 VRFADPK 224 (700)
Q Consensus 218 V~~a~~k 224 (700)
|.+-.+.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9998776
No 129
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=98.46 E-value=3.4e-08 Score=105.73 Aligned_cols=35 Identities=54% Similarity=0.933 Sum_probs=31.7
Q ss_pred CCCceeeeCCCCCcccccCCcCcccccCChhhhHH
Q 005357 558 KSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLF 592 (700)
Q Consensus 558 ~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~~~~~ 592 (700)
.++|.|.+++|||.||||++|++|+||||+||..-
T Consensus 14 ~s~w~e~k~~dgRiYYYN~~T~kS~weKPkell~~ 48 (590)
T COG5104 14 RSEWEELKAPDGRIYYYNKRTGKSSWEKPKELLKG 48 (590)
T ss_pred HHHHHHhhCCCCceEEEecccccccccChHHHhcc
Confidence 46899999999999999999999999999886533
No 130
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=98.45 E-value=9.8e-08 Score=67.33 Aligned_cols=29 Identities=48% Similarity=1.053 Sum_probs=27.7
Q ss_pred CCceeeeCCCCCcccccCCcCcccccCCh
Q 005357 559 SSWTEHTSPDGYKYYYNCVTGVSKWEKPE 587 (700)
Q Consensus 559 ~~w~e~~~~~g~~yyyn~~t~~s~w~kp~ 587 (700)
..|.++.+++|+.||||..|++|+||+|.
T Consensus 3 ~gW~~~~~~~g~~yy~n~~t~~s~W~~P~ 31 (32)
T smart00456 3 PGWEERKDPDGRPYYYNHETKETQWEKPR 31 (32)
T ss_pred CCCEEEECCCCCEEEEECCCCCEEcCCCC
Confidence 57999999999999999999999999996
No 131
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.44 E-value=1.6e-06 Score=91.85 Aligned_cols=153 Identities=20% Similarity=0.256 Sum_probs=110.0
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
.+++..|-.++|++..++.+|..||.-.......+.+....-|+..|++.|.|.|.|.-+.|++.- ++.+ ..+.+.
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRh--khh~--g~ryie 132 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRH--KHHM--GTRYIE 132 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhh--hhhc--cCCcee
Confidence 455667778999999999999999986643333333322233677799999999999999999863 2333 234455
Q ss_pred eecccccccc--------------cCcccceeeccCCCccccHHHHHHHhcCC----CceeEEEEeeCCCCCccceEEEE
Q 005357 128 VRYADGERER--------------LGAVEYKLFVGSLNKQATEKEVEEIFSPY----GRVEDVYLMRDELKQSRGCGFVK 189 (700)
Q Consensus 128 V~~a~~~~~~--------------~~~~s~~LfV~nLp~~~teedL~~~F~~f----G~V~~v~I~~d~~g~srG~aFVe 189 (700)
|-.+..+.-. .+...-.|.+++||+++++.||.++|... |.++.|-+++..+|+..|-|||.
T Consensus 133 vYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvl 212 (508)
T KOG1365|consen 133 VYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVL 212 (508)
T ss_pred eeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEE
Confidence 5544322111 01222357778999999999999999632 35677877777789999999999
Q ss_pred eCCHHHHHHHHHHhc
Q 005357 190 YSHRDMALAAINALN 204 (700)
Q Consensus 190 F~~~e~A~~Ai~~Ln 204 (700)
|..+++|..|+.+..
T Consensus 213 fa~ee~aq~aL~khr 227 (508)
T KOG1365|consen 213 FACEEDAQFALRKHR 227 (508)
T ss_pred ecCHHHHHHHHHHHH
Confidence 999999999998644
No 132
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.41 E-value=3.9e-07 Score=100.17 Aligned_cols=80 Identities=23% Similarity=0.347 Sum_probs=72.1
Q ss_pred ccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEE
Q 005357 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219 (700)
Q Consensus 141 ~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~ 219 (700)
..++|||.+|...+...||+++|++||+|+-.+|+.+. +-..++|+||++.+.++|.+||+.||-+.+ .|+.|.|+
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTEL---HGrmISVE 480 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTEL---HGRMISVE 480 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhh---cceeeeee
Confidence 35689999999999999999999999999999998875 456799999999999999999999999888 68999999
Q ss_pred ecCC
Q 005357 220 FADP 223 (700)
Q Consensus 220 ~a~~ 223 (700)
.++.
T Consensus 481 kaKN 484 (940)
T KOG4661|consen 481 KAKN 484 (940)
T ss_pred eccc
Confidence 8775
No 133
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.41 E-value=6.2e-07 Score=92.19 Aligned_cols=77 Identities=25% Similarity=0.439 Sum_probs=68.0
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccc
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPI 126 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l 126 (700)
.....+|+|.||++.|+++||+++|+.||++..+.|-.|+ +|++.|.|-|.|+..+||++||+.+++ ..++|+...+
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~g-v~ldG~~mk~ 156 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNG-VALDGRPMKI 156 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcC-cccCCceeee
Confidence 3445789999999999999999999999999999888887 499999999999999999999999988 7777765333
No 134
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=98.41 E-value=1.5e-07 Score=65.73 Aligned_cols=29 Identities=45% Similarity=0.965 Sum_probs=27.5
Q ss_pred CCceeeeCCCCCcccccCCcCcccccCCh
Q 005357 559 SSWTEHTSPDGYKYYYNCVTGVSKWEKPE 587 (700)
Q Consensus 559 ~~w~e~~~~~g~~yyyn~~t~~s~w~kp~ 587 (700)
..|.++.+.+|+.||||..|++|+||+|.
T Consensus 2 ~~W~~~~~~~g~~yy~n~~t~~s~W~~P~ 30 (31)
T cd00201 2 PGWEERWDPDGRVYYYNHNTKETQWEDPR 30 (31)
T ss_pred CCCEEEECCCCCEEEEECCCCCEeCCCCC
Confidence 47999999999999999999999999995
No 135
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.41 E-value=5.3e-07 Score=92.68 Aligned_cols=82 Identities=22% Similarity=0.366 Sum_probs=75.2
Q ss_pred ccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEe
Q 005357 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220 (700)
Q Consensus 141 ~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~ 220 (700)
...+|+|.||++.++++||+++|+.||.++.+-|..++.|.+.|+|-|.|+..++|.+|++.+++..+ +++.+.+..
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~l---dG~~mk~~~ 158 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVAL---DGRPMKIEI 158 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCccc---CCceeeeEE
Confidence 35689999999999999999999999999999999999999999999999999999999999999555 788899888
Q ss_pred cCCCC
Q 005357 221 ADPKR 225 (700)
Q Consensus 221 a~~k~ 225 (700)
.....
T Consensus 159 i~~~~ 163 (243)
T KOG0533|consen 159 ISSPS 163 (243)
T ss_pred ecCcc
Confidence 77654
No 136
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.40 E-value=1.1e-06 Score=90.38 Aligned_cols=82 Identities=18% Similarity=0.336 Sum_probs=75.2
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCC-CCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDEL-KQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~-g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
......+||+|+.+.++.+++..+|+.||.|..|.|..|+. +..+||+||+|++.+.+..|+. |++..+ .++.+.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i---~~~~i~ 173 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEI---PGPAIE 173 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccc---ccccce
Confidence 45567899999999999999999999999999999999985 5799999999999999999999 999988 789999
Q ss_pred EEecCCC
Q 005357 218 VRFADPK 224 (700)
Q Consensus 218 V~~a~~k 224 (700)
|.+.+.+
T Consensus 174 vt~~r~~ 180 (231)
T KOG4209|consen 174 VTLKRTN 180 (231)
T ss_pred eeeeeee
Confidence 9998876
No 137
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.39 E-value=1.6e-06 Score=77.15 Aligned_cols=81 Identities=19% Similarity=0.280 Sum_probs=66.3
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcc--CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCC-cccccee
Q 005357 52 AKLFVGSVPKTAREEDIRPLFEEH--GNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPG-GVGPIQV 128 (700)
Q Consensus 52 ~tLfVgnLP~~vteedL~elF~~~--G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g-~~~~l~V 128 (700)
+||.|+|||...|.++|.+++... |...-+.+..|..++.+.|||||.|.+.++|.+..+.+++...-.. .....+|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999988654 6777888899999999999999999999999999999988666322 2233455
Q ss_pred eccc
Q 005357 129 RYAD 132 (700)
Q Consensus 129 ~~a~ 132 (700)
.+|+
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 5554
No 138
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.39 E-value=7.5e-08 Score=102.76 Aligned_cols=155 Identities=22% Similarity=0.340 Sum_probs=122.4
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhccC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceeec
Q 005357 52 AKLFVGSVPKTAREEDIRPLFEEHG-NVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRY 130 (700)
Q Consensus 52 ~tLfVgnLP~~vteedL~elF~~~G-~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~~ 130 (700)
.+|||+||...++..||+.+|...- .+..-.+++ .||+||.+.+...|.+|++.++++..+.|+. +++..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~elqGkr--~e~~~ 72 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKVELQGKR--QEVEH 72 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhhhhcCce--eeccc
Confidence 4799999999999999999998652 112223333 2699999999999999999999988887765 56666
Q ss_pred ccccccccCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceecc
Q 005357 131 ADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMR 210 (700)
Q Consensus 131 a~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~ 210 (700)
+-.++.+ ++++-|.|++....++.|..++..||.|+.|+.+..+.. .-..-|+|...+.+..||.+|+|..+
T Consensus 73 sv~kkqr----srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e--tavvnvty~~~~~~~~ai~kl~g~Q~-- 144 (584)
T KOG2193|consen 73 SVPKKQR----SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE--TAVVNVTYSAQQQHRQAIHKLNGPQL-- 144 (584)
T ss_pred hhhHHHH----hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH--HHHHHHHHHHHHHHHHHHHhhcchHh--
Confidence 5555443 557999999999999999999999999999987544321 22345788999999999999999988
Q ss_pred CCccceEEEecCCC
Q 005357 211 GCDQPLTVRFADPK 224 (700)
Q Consensus 211 g~gr~L~V~~a~~k 224 (700)
....++|.|--..
T Consensus 145 -en~~~k~~YiPde 157 (584)
T KOG2193|consen 145 -ENQHLKVGYIPDE 157 (584)
T ss_pred -hhhhhhcccCchh
Confidence 5678888886543
No 139
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.37 E-value=3.5e-07 Score=92.13 Aligned_cols=73 Identities=33% Similarity=0.604 Sum_probs=65.4
Q ss_pred ceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEecC
Q 005357 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222 (700)
Q Consensus 143 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~ 222 (700)
.++||++|++.+.++||+++|.+||.|.+|.+. .||+||+|+|..+|..||..||++.+ ++..+.|++++
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~l---~~e~~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKEL---CGERLVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-------cccceeccCchhhhhcccchhcCcee---cceeeeeeccc
Confidence 369999999999999999999999999999875 35999999999999999999999988 55669999988
Q ss_pred CCC
Q 005357 223 PKR 225 (700)
Q Consensus 223 ~k~ 225 (700)
...
T Consensus 72 ~~~ 74 (216)
T KOG0106|consen 72 GKR 74 (216)
T ss_pred ccc
Confidence 654
No 140
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.35 E-value=2.6e-05 Score=88.15 Aligned_cols=67 Identities=15% Similarity=0.122 Sum_probs=55.3
Q ss_pred CCCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeE-EEEeecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 005357 45 LVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIE-VALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112 (700)
Q Consensus 45 ~~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~-i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~ 112 (700)
........+|||..||..+++.++.++|...-.|++ |.|.+.. +++-++.|||+|.+++++.+|..+
T Consensus 428 p~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~ 495 (944)
T KOG4307|consen 428 PFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSV 495 (944)
T ss_pred CCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhc
Confidence 344556789999999999999999999999888888 6665554 588899999999998888777754
No 141
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.33 E-value=2.2e-05 Score=82.41 Aligned_cols=67 Identities=16% Similarity=0.269 Sum_probs=57.8
Q ss_pred cceeeccCCCccccHHHHHHHhcCCC--ceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCcee
Q 005357 142 EYKLFVGSLNKQATEKEVEEIFSPYG--RVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYT 208 (700)
Q Consensus 142 s~~LfV~nLp~~~teedL~~~F~~fG--~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~ 208 (700)
...+||+||-|++|++||.+.+...| .+.+++++.+. +|.+||||+|...+..+.++.++.|-.+.+
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~i 149 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTI 149 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhccccee
Confidence 45799999999999999999887766 47778888776 589999999999999999999988877766
No 142
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.30 E-value=1.3e-06 Score=98.37 Aligned_cols=164 Identities=18% Similarity=0.113 Sum_probs=116.8
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccccee
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQV 128 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V 128 (700)
.+.+.+-+.+.++++++.|+++||-.. .|-.+.|.++...+...|-++|+|....++.+|+..- ...++ .+.+++
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn-~~~~~---~R~~q~ 383 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRN-PSDDV---NRPFQT 383 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcC-chhhh---hcceee
Confidence 456777788999999999999998654 3556666666554555789999999999999998752 22221 122333
Q ss_pred eccccc------------c-------------------------cccCcccceeeccCCCccccHHHHHHHhcCCCceeE
Q 005357 129 RYADGE------------R-------------------------ERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171 (700)
Q Consensus 129 ~~a~~~------------~-------------------------~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~ 171 (700)
...... . .........|||..|+..+++.++.++|...-.|++
T Consensus 384 ~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved 463 (944)
T KOG4307|consen 384 GPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVED 463 (944)
T ss_pred cCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhh
Confidence 222100 0 000123467999999999999999999999878887
Q ss_pred -EEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEe
Q 005357 172 -VYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220 (700)
Q Consensus 172 -v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~ 220 (700)
|.|.+..+++.++.|||+|.+.+++.+|....+..++ +.|-|+|.-
T Consensus 464 ~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~---G~r~irv~s 510 (944)
T KOG4307|consen 464 FIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYP---GHRIIRVDS 510 (944)
T ss_pred eeEeccCCcccccchhhheeccccccchhhhccccccc---CceEEEeec
Confidence 7777777888999999999998888888764444333 466677753
No 143
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.29 E-value=1.2e-06 Score=96.82 Aligned_cols=65 Identities=18% Similarity=0.364 Sum_probs=56.3
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~ 112 (700)
.....+|||+|||.++++++|+++|..||+|+...|......++..+||||+|++.++++.||++
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A 349 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA 349 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc
Confidence 34455699999999999999999999999999988877553455559999999999999999987
No 144
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.12 E-value=2.9e-06 Score=87.32 Aligned_cols=72 Identities=22% Similarity=0.370 Sum_probs=65.8
Q ss_pred CCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhccccc
Q 005357 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHT 118 (700)
Q Consensus 46 ~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~ 118 (700)
....+.+.|||+|+.+.+|.+++...|+.||.|..|.|..|+.++..|||+||+|.+.+.+++++. |++..+
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i 167 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEI 167 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccc
Confidence 445678899999999999999999999999999999999999999999999999999999999998 876554
No 145
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.12 E-value=5.9e-06 Score=93.52 Aligned_cols=83 Identities=16% Similarity=0.365 Sum_probs=70.2
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCC---CCcccEEEEEeCCHHHHHHHHHHhcccccCCCccc
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKT---GQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVG 124 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~T---g~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~ 124 (700)
+...++|||+||+..++|+.|...|..||+|.+|+|+..+.. .+.+-|+||-|-+..||++|++.|++..+ ...
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv---~~~ 247 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV---MEY 247 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee---eee
Confidence 445788999999999999999999999999999999985432 35567999999999999999999998766 345
Q ss_pred cceeecccc
Q 005357 125 PIQVRYADG 133 (700)
Q Consensus 125 ~l~V~~a~~ 133 (700)
.+++.|++.
T Consensus 248 e~K~gWgk~ 256 (877)
T KOG0151|consen 248 EMKLGWGKA 256 (877)
T ss_pred eeeeccccc
Confidence 577777753
No 146
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.03 E-value=2.5e-06 Score=94.68 Aligned_cols=72 Identities=22% Similarity=0.309 Sum_probs=63.1
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
.....+|+|.||+..+++++|+++|+.||+|+.|+.-. ..+|.+||+|.|+.+|++|+++|++..+ .++.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~----~~~~~~~v~FyDvR~A~~Alk~l~~~~~---~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP----NKRGIVFVEFYDVRDAERALKALNRREI---AGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc----ccCceEEEEEeehHhHHHHHHHHHHHHh---hhhhhc
Confidence 45577999999999999999999999999999975433 3678999999999999999999999988 466666
No 147
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.03 E-value=2.6e-06 Score=84.49 Aligned_cols=79 Identities=15% Similarity=0.167 Sum_probs=69.5
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~ 219 (700)
..+++|||.|+...++|+-|.++|..-|.|.+|.|..++.++.| ||||+|+++....-|++.+||..++ ++.+.|.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~---~~e~q~~ 82 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLE---EDEEQRT 82 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhc---cchhhcc
Confidence 34679999999999999999999999999999999999888888 9999999999999999999998873 5556555
Q ss_pred ecC
Q 005357 220 FAD 222 (700)
Q Consensus 220 ~a~ 222 (700)
+-.
T Consensus 83 ~r~ 85 (267)
T KOG4454|consen 83 LRC 85 (267)
T ss_pred ccc
Confidence 543
No 148
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.01 E-value=2e-05 Score=83.14 Aligned_cols=81 Identities=26% Similarity=0.283 Sum_probs=72.7
Q ss_pred ccceeeccCCCccccHHHHHHHhcCCCceeE--------EEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCC
Q 005357 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVED--------VYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGC 212 (700)
Q Consensus 141 ~s~~LfV~nLp~~~teedL~~~F~~fG~V~~--------v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~ 212 (700)
....|||.|||.++|.+++.++|++||.|.. |+|.+++.|.-+|=|+|.|...|++.-|++.|++..+ .
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~---r 209 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDEL---R 209 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccc---c
Confidence 3467999999999999999999999997653 7888888999999999999999999999999999988 6
Q ss_pred ccceEEEecCCC
Q 005357 213 DQPLTVRFADPK 224 (700)
Q Consensus 213 gr~L~V~~a~~k 224 (700)
|+.|+|+.|+-.
T Consensus 210 g~~~rVerAkfq 221 (382)
T KOG1548|consen 210 GKKLRVERAKFQ 221 (382)
T ss_pred CcEEEEehhhhh
Confidence 899999988643
No 149
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.98 E-value=0.0001 Score=79.71 Aligned_cols=69 Identities=16% Similarity=0.287 Sum_probs=58.4
Q ss_pred ccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeC---C---CC-C-------ccceEEEEeCCHHHHHHHHHHhcCc
Q 005357 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD---E---LK-Q-------SRGCGFVKYSHRDMALAAINALNGI 206 (700)
Q Consensus 141 ~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d---~---~g-~-------srG~aFVeF~~~e~A~~Ai~~Lng~ 206 (700)
.+++|.+.||+.+-..+.|.++|..+|.|+.|+|++. . .+ . .+-+|||||+..++|.+|.+.|+..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 5689999999999999999999999999999999887 1 11 1 2568999999999999999988665
Q ss_pred eec
Q 005357 207 YTM 209 (700)
Q Consensus 207 ~~~ 209 (700)
..+
T Consensus 310 ~~w 312 (484)
T KOG1855|consen 310 QNW 312 (484)
T ss_pred hhh
Confidence 543
No 150
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.95 E-value=4.5e-06 Score=88.85 Aligned_cols=148 Identities=20% Similarity=0.237 Sum_probs=104.3
Q ss_pred eEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCC---CCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceee
Q 005357 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKT---GQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVR 129 (700)
Q Consensus 53 tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~T---g~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~ 129 (700)
.|-|.||.+.+|.+.+..||..+|+|.+++|+.+... ....-.|||.|.|...+..|-. |.+..+++... |.+-
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdral--iv~p 85 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRAL--IVRP 85 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeE--EEEe
Confidence 7999999999999999999999999999999885432 3456799999999998887754 54555544322 1111
Q ss_pred ccccccc-----------------------------------------------------ccCcccceeeccCCCccccH
Q 005357 130 YADGERE-----------------------------------------------------RLGAVEYKLFVGSLNKQATE 156 (700)
Q Consensus 130 ~a~~~~~-----------------------------------------------------~~~~~s~~LfV~nLp~~~te 156 (700)
+.+.... .......+|+|.+|...+..
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l 165 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAIL 165 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcc
Confidence 1110000 00112356999999999999
Q ss_pred HHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCce
Q 005357 157 KEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIY 207 (700)
Q Consensus 157 edL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~ 207 (700)
+++.++|..+|+|.+..+-. +...-+|.|+|........|+. .+|..
T Consensus 166 ~e~~e~f~r~Gev~ya~~as---k~~s~~c~~sf~~qts~~halr-~~gre 212 (479)
T KOG4676|consen 166 PESGESFERKGEVSYAHTAS---KSRSSSCSHSFRKQTSSKHALR-SHGRE 212 (479)
T ss_pred hhhhhhhhhcchhhhhhhhc---cCCCcchhhhHhhhhhHHHHHH-hcchh
Confidence 99999999999988876543 2334577789977777666666 34433
No 151
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.93 E-value=1.3e-05 Score=90.74 Aligned_cols=81 Identities=26% Similarity=0.498 Sum_probs=71.7
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCC----CCccceEEEEeCCHHHHHHHHHHhcCceeccCCccc
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDEL----KQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQP 215 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~----g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~ 215 (700)
..+++|||+||+..++++.|...|.+||.|..|+|+...+ ...+.|+||.|.++.+|++|++.|+|.++ .+..
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv---~~~e 248 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV---MEYE 248 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee---eeee
Confidence 3457899999999999999999999999999999988743 46788999999999999999999999988 4678
Q ss_pred eEEEecCC
Q 005357 216 LTVRFADP 223 (700)
Q Consensus 216 L~V~~a~~ 223 (700)
+++.|++.
T Consensus 249 ~K~gWgk~ 256 (877)
T KOG0151|consen 249 MKLGWGKA 256 (877)
T ss_pred eeeccccc
Confidence 88888764
No 152
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=97.91 E-value=2.2e-06 Score=92.22 Aligned_cols=37 Identities=38% Similarity=0.748 Sum_probs=33.0
Q ss_pred CCCCceeeeCCCCCcccccCCcCcccccCChhhhHHH
Q 005357 557 AKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFE 593 (700)
Q Consensus 557 ~~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~~~~~~ 593 (700)
....|+|.++.|||+||||..|+||+|+.|+|.|..+
T Consensus 54 ~~~~Wke~~TadGkvyyyN~~TREs~W~iP~e~KkVe 90 (590)
T COG5104 54 DVDPWKECRTADGKVYYYNSITRESRWKIPPERKKVE 90 (590)
T ss_pred chhhHHHHhhcCCceEEecCccccccccCChhhhccC
Confidence 3457999999999999999999999999999977643
No 153
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.78 E-value=9.5e-05 Score=65.84 Aligned_cols=82 Identities=18% Similarity=0.263 Sum_probs=66.2
Q ss_pred ceeeccCCCccccHHHHHHHhcCC--CceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceecc-CCccceEE
Q 005357 143 YKLFVGSLNKQATEKEVEEIFSPY--GRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMR-GCDQPLTV 218 (700)
Q Consensus 143 ~~LfV~nLp~~~teedL~~~F~~f--G~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~-g~gr~L~V 218 (700)
++|-|+|||...+.++|.+++... |....+.+..|- ++.+.|||||.|.+.++|.+..+.++|+.+-. ...+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999888653 555666666664 57789999999999999999999999988732 23567788
Q ss_pred EecCCC
Q 005357 219 RFADPK 224 (700)
Q Consensus 219 ~~a~~k 224 (700)
.||+-.
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 888643
No 154
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.78 E-value=7.3e-05 Score=64.04 Aligned_cols=70 Identities=19% Similarity=0.369 Sum_probs=47.5
Q ss_pred ceeeccCCCccccHH----HHHHHhcCCC-ceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 143 YKLFVGSLNKQATEK----EVEEIFSPYG-RVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 143 ~~LfV~nLp~~~tee----dL~~~F~~fG-~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
..|+|.|||.+.+.. .|+.++..+| +|..| ..+.|+|.|.+.|.|.+|.+.|+|..+| |++|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v---------~~~tAilrF~~~~~A~RA~KRmegEdVf---G~kI~ 70 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV---------SGGTAILRFPNQEFAERAQKRMEGEDVF---GNKIS 70 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SS---SS--E
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE---------eCCEEEEEeCCHHHHHHHHHhhcccccc---cceEE
Confidence 469999999987765 4566777886 46665 2468999999999999999999999985 78999
Q ss_pred EEecCCC
Q 005357 218 VRFADPK 224 (700)
Q Consensus 218 V~~a~~k 224 (700)
|+|....
T Consensus 71 v~~~~~~ 77 (90)
T PF11608_consen 71 VSFSPKN 77 (90)
T ss_dssp EESS--S
T ss_pred EEEcCCc
Confidence 9998543
No 155
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.73 E-value=6.5e-05 Score=79.94 Aligned_cols=82 Identities=21% Similarity=0.328 Sum_probs=71.5
Q ss_pred ccceeeccCCCccccHHHHHHHhcCCCceeE--------EEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccC
Q 005357 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVED--------VYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRG 211 (700)
Q Consensus 141 ~s~~LfV~nLp~~~teedL~~~F~~fG~V~~--------v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g 211 (700)
...+|||-+|++.+++++|.++|..+|.|.. |.|-+++ ++..||-|.|.|+|..+|+.||+-++++.|
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf--- 141 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF--- 141 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc---
Confidence 3568999999999999999999999997754 4454554 689999999999999999999999999998
Q ss_pred CccceEEEecCCCC
Q 005357 212 CDQPLTVRFADPKR 225 (700)
Q Consensus 212 ~gr~L~V~~a~~k~ 225 (700)
++..|+|.+++.+.
T Consensus 142 ~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 142 CGNTIKVSLAERRT 155 (351)
T ss_pred cCCCchhhhhhhcc
Confidence 77999999998775
No 156
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.68 E-value=6.9e-06 Score=95.02 Aligned_cols=155 Identities=22% Similarity=0.222 Sum_probs=112.0
Q ss_pred CCceEEEeCCCCCCcHH-HHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccccee
Q 005357 50 SFAKLFVGSVPKTAREE-DIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQV 128 (700)
Q Consensus 50 ~~~tLfVgnLP~~vtee-dL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V 128 (700)
..+.+++.++.+...+. .+++.|..+|.|+.|++......-..--+.|+.+....+++.|...- +..+ .++ .+.+
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa-~~~~-a~~--~~av 645 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPA-GGAL-ANR--SAAV 645 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccccc-cccc-CCc--cccC
Confidence 45667888888776655 78899999999999998763322222238889999999999988653 3222 222 2333
Q ss_pred ecccccccc--cC------cccceeeccCCCccccHHHHHHHhcCCCceeEEEEe-eCCCCCccceEEEEeCCHHHHHHH
Q 005357 129 RYADGERER--LG------AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLM-RDELKQSRGCGFVKYSHRDMALAA 199 (700)
Q Consensus 129 ~~a~~~~~~--~~------~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~-~d~~g~srG~aFVeF~~~e~A~~A 199 (700)
..++.+... .. ...+++||+||+..+.++||..+|..+|.++.+.|. ...++.-||+|+|+|.+.+++.+|
T Consensus 646 ~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aa 725 (881)
T KOG0128|consen 646 GLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAA 725 (881)
T ss_pred CCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhh
Confidence 333332211 11 223679999999999999999999999988887765 333578899999999999999999
Q ss_pred HHHhcCcee
Q 005357 200 INALNGIYT 208 (700)
Q Consensus 200 i~~Lng~~~ 208 (700)
|...+.+.+
T Consensus 726 V~f~d~~~~ 734 (881)
T KOG0128|consen 726 VAFRDSCFF 734 (881)
T ss_pred hhhhhhhhh
Confidence 987766554
No 157
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.65 E-value=0.00017 Score=73.61 Aligned_cols=110 Identities=20% Similarity=0.222 Sum_probs=84.9
Q ss_pred HHHHHHHHhcccccCCCccccceeecccccccccCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccc
Q 005357 105 EADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRG 184 (700)
Q Consensus 105 dA~~Ai~~L~g~~~~~g~~~~l~V~~a~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG 184 (700)
-|+.|..+|++... +.+.|+|+|+.. ..|||.||...++.|.|+..|+.||.|+...++.|..++..+
T Consensus 6 ~ae~ak~eLd~~~~---~~~~lr~rfa~~---------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~ 73 (275)
T KOG0115|consen 6 LAEIAKRELDGRFP---KGRSLRVRFAMH---------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTR 73 (275)
T ss_pred HHHHHHHhcCCCCC---CCCceEEEeecc---------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccc
Confidence 46677777866444 445688888763 479999999999999999999999999998888888888889
Q ss_pred eEEEEeCCHHHHHHHHHHhcCce-eccCCccceEEEecCCCCC
Q 005357 185 CGFVKYSHRDMALAAINALNGIY-TMRGCDQPLTVRFADPKRP 226 (700)
Q Consensus 185 ~aFVeF~~~e~A~~Ai~~Lng~~-~~~g~gr~L~V~~a~~k~~ 226 (700)
-++|+|...-.|.+|+..+...- .+..+++++.|.-..-..+
T Consensus 74 eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~eq~~d 116 (275)
T KOG0115|consen 74 EGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPMEQPDD 116 (275)
T ss_pred cchhhhhcchhHHHHHHHhccCccccCCCCCccCCChhhccCC
Confidence 99999999999999998874333 2333556666655544433
No 158
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.64 E-value=0.00022 Score=75.93 Aligned_cols=85 Identities=25% Similarity=0.380 Sum_probs=71.6
Q ss_pred CCCCCCCceEEEeCCCCCCcHHHHHHHHhccCCee--------EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhccc
Q 005357 45 LVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVI--------EVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQ 116 (700)
Q Consensus 45 ~~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~--------~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~ 116 (700)
..+.....+|||-+|+..+++++|.++|..+|.|. .|+|-+|++|++.||-|.|.|+|...|+.||+.++++
T Consensus 60 ~~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agk 139 (351)
T KOG1995|consen 60 MADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGK 139 (351)
T ss_pred cccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccc
Confidence 33456678999999999999999999999999775 4788889999999999999999999999999999886
Q ss_pred ccCCCccccceeeccc
Q 005357 117 HTLPGGVGPIQVRYAD 132 (700)
Q Consensus 117 ~~~~g~~~~l~V~~a~ 132 (700)
.+.. ..|+|..+.
T Consensus 140 df~g---n~ikvs~a~ 152 (351)
T KOG1995|consen 140 DFCG---NTIKVSLAE 152 (351)
T ss_pred cccC---CCchhhhhh
Confidence 6633 445555543
No 159
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.60 E-value=0.00011 Score=66.67 Aligned_cols=72 Identities=21% Similarity=0.358 Sum_probs=43.8
Q ss_pred ceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCc---eeccCCccceEEE
Q 005357 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGI---YTMRGCDQPLTVR 219 (700)
Q Consensus 143 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~---~~~~g~gr~L~V~ 219 (700)
+.|+|.++...++.++|++.|+.||.|..|++.+.. ..|||+|.+.++|.+|++.+... .+ ..++..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~-----~~g~VRf~~~~~A~~a~~~~~~~~~~~~-~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD-----TEGYVRFKTPEAAQKALEKLKEANDGKL-KIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHTTTS-B--TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC-----CEEEEEECCcchHHHHHHHHHhccCCce-EEcCceEEEE
Confidence 468899999999999999999999999999987653 37999999999999999877544 22 1134555555
Q ss_pred e
Q 005357 220 F 220 (700)
Q Consensus 220 ~ 220 (700)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 4
No 160
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.58 E-value=0.0066 Score=64.35 Aligned_cols=75 Identities=13% Similarity=0.317 Sum_probs=63.1
Q ss_pred CCCCCceEEEeCCCCCCcHHHHHHHHhccC--CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCc
Q 005357 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHG--NVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGG 122 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~~vteedL~elF~~~G--~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~ 122 (700)
......++|||||-+.+|++||.+.+...| .|.+++++.++.+|.+||||+|...+...+++.++.|- ++.+.|.
T Consensus 76 ~~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP-~k~iHGQ 152 (498)
T KOG4849|consen 76 SEGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILP-TKTIHGQ 152 (498)
T ss_pred ccCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcc-cceecCC
Confidence 344567899999999999999999998877 67889999999999999999999999999999998773 3444443
No 161
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.54 E-value=0.00038 Score=59.76 Aligned_cols=70 Identities=21% Similarity=0.471 Sum_probs=45.3
Q ss_pred CceEEEeCCCCCCcHHH----HHHHHhccC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccc
Q 005357 51 FAKLFVGSVPKTAREED----IRPLFEEHG-NVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGP 125 (700)
Q Consensus 51 ~~tLfVgnLP~~vteed----L~elF~~~G-~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~ 125 (700)
...|||.|||.+.+... |+.+++.|| .|.+|. .+.|+|.|.+.|.|++|.+.|++..++..+
T Consensus 2 ~s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~k--- 68 (90)
T PF11608_consen 2 HSLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNK--- 68 (90)
T ss_dssp SEEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS----
T ss_pred ccEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccce---
Confidence 35799999999887665 456667776 666662 258999999999999999999887776543
Q ss_pred ceeecccc
Q 005357 126 IQVRYADG 133 (700)
Q Consensus 126 l~V~~a~~ 133 (700)
|.|++...
T Consensus 69 I~v~~~~~ 76 (90)
T PF11608_consen 69 ISVSFSPK 76 (90)
T ss_dssp -EEESS--
T ss_pred EEEEEcCC
Confidence 67776643
No 162
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.48 E-value=0.00026 Score=64.17 Aligned_cols=58 Identities=22% Similarity=0.417 Sum_probs=39.7
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc
Q 005357 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHN 115 (700)
Q Consensus 52 ~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g 115 (700)
+.|+|.++...++.++|+++|+.||.|..|.+.+... .|||.|.+.++|++|++.+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~ 59 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKE 59 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHh
Confidence 5789999999999999999999999999999877543 799999999999999998754
No 163
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.44 E-value=0.00027 Score=74.23 Aligned_cols=80 Identities=18% Similarity=0.397 Sum_probs=64.7
Q ss_pred cceeeccCCCccccHHHH------HHHhcCCCceeEEEEeeCCC--CCccc-e-EEEEeCCHHHHHHHHHHhcCceeccC
Q 005357 142 EYKLFVGSLNKQATEKEV------EEIFSPYGRVEDVYLMRDEL--KQSRG-C-GFVKYSHRDMALAAINALNGIYTMRG 211 (700)
Q Consensus 142 s~~LfV~nLp~~~teedL------~~~F~~fG~V~~v~I~~d~~--g~srG-~-aFVeF~~~e~A~~Ai~~Lng~~~~~g 211 (700)
.+-+||-+|+..+..|++ .++|..||.|..|.|-++.. ....+ + .||+|.+.|+|.+||.+.+|...
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~--- 190 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL--- 190 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc---
Confidence 456899999998877763 47999999999998876631 11222 2 39999999999999999999988
Q ss_pred CccceEEEecCCC
Q 005357 212 CDQPLTVRFADPK 224 (700)
Q Consensus 212 ~gr~L~V~~a~~k 224 (700)
|||.|+..|...+
T Consensus 191 DGr~lkatYGTTK 203 (480)
T COG5175 191 DGRVLKATYGTTK 203 (480)
T ss_pred cCceEeeecCchH
Confidence 8999999998876
No 164
>KOG0155 consensus Transcription factor CA150 [Transcription]
Probab=97.29 E-value=0.00013 Score=80.55 Aligned_cols=36 Identities=50% Similarity=0.826 Sum_probs=33.0
Q ss_pred CCceeeeCCCCCcccccCCcCcccccCChhhhHHHH
Q 005357 559 SSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQ 594 (700)
Q Consensus 559 ~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~~~~~~~ 594 (700)
+.|+||+++||++||||+.|.+++|++|..|...+-
T Consensus 12 s~wtef~ap~G~pyy~ns~t~~st~ekP~~l~~~~s 47 (617)
T KOG0155|consen 12 SGWTEFKAPDGIPYYWNSETLESTWEKPSFLEKNES 47 (617)
T ss_pred CCCccCCCCCCcceecccccccchhhCchhhhhccc
Confidence 679999999999999999999999999999876543
No 165
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.00058 Score=76.13 Aligned_cols=73 Identities=18% Similarity=0.371 Sum_probs=59.9
Q ss_pred CCCceEEEeCCCCC------CcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCc
Q 005357 49 SSFAKLFVGSVPKT------AREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGG 122 (700)
Q Consensus 49 ~~~~tLfVgnLP~~------vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~ 122 (700)
.....|+|-|+|.- .-..-|..+|+++|+|+.+.+..+..+| ++||.|++|++..+|++|++.|||+.+....
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 44678999999843 2233466889999999999999888755 9999999999999999999999998775443
No 166
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.14 E-value=0.00083 Score=69.58 Aligned_cols=68 Identities=24% Similarity=0.355 Sum_probs=56.3
Q ss_pred cHHHHHHHhcCCCceeEEEEeeCCCC--CccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEecCCCC
Q 005357 155 TEKEVEEIFSPYGRVEDVYLMRDELK--QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKR 225 (700)
Q Consensus 155 teedL~~~F~~fG~V~~v~I~~d~~g--~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~~k~ 225 (700)
-++++++.+++||.|.+|.|+.+..- ..---.||+|+..+.|.+|+-.|||++| +||.++..|.+..+
T Consensus 299 lede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyF---GGr~v~A~Fyn~ek 368 (378)
T KOG1996|consen 299 LEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYF---GGRVVSACFYNLEK 368 (378)
T ss_pred HHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCcee---cceeeeheeccHHh
Confidence 46788999999999999999988531 1122469999999999999999999988 79999998887543
No 167
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.14 E-value=0.00045 Score=74.87 Aligned_cols=67 Identities=16% Similarity=0.320 Sum_probs=57.8
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeec---CCCC--C--------cccEEEEEeCCHHHHHHHHHHhcc
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKD---KKTG--Q--------QQGCCFIKYATSEEADRAIRALHN 115 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d---~~Tg--~--------skG~aFVeF~~~edA~~Ai~~L~g 115 (700)
-.+++|.+-|||.+-..+.|.+||..+|.|..|+|+.- ..+. . .+-+|||+|++.+.|++|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 47899999999999999999999999999999999875 3321 1 267899999999999999998754
No 168
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.12 E-value=0.00082 Score=75.01 Aligned_cols=77 Identities=25% Similarity=0.342 Sum_probs=63.5
Q ss_pred cceeeccCCCcc------ccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccc
Q 005357 142 EYKLFVGSLNKQ------ATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQP 215 (700)
Q Consensus 142 s~~LfV~nLp~~------~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~ 215 (700)
...|+|.|+|-- .-..-|.++|+++|+|..+.+..++.|.++||.|++|.+..+|+.|++.|||+.+. .+++
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ld--knHt 135 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLD--KNHT 135 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceec--ccce
Confidence 457888888742 22345678999999999999998988889999999999999999999999999884 3566
Q ss_pred eEEEe
Q 005357 216 LTVRF 220 (700)
Q Consensus 216 L~V~~ 220 (700)
+.|+.
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 66664
No 169
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.12 E-value=0.001 Score=52.60 Aligned_cols=52 Identities=17% Similarity=0.465 Sum_probs=42.3
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 005357 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAI 110 (700)
Q Consensus 52 ~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai 110 (700)
+.|-|.+.+.+.. ++|++.|..||+|+++.+-.+.+ +.||+|++..+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~~------~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPESTN------WMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCCCc------EEEEEECCHHHHHhhC
Confidence 5688888887755 45566888999999998864443 9999999999999985
No 170
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.00022 Score=66.76 Aligned_cols=31 Identities=35% Similarity=0.815 Sum_probs=27.5
Q ss_pred CCCceeeeCC-CCCcccccCCcCcccccCChh
Q 005357 558 KSSWTEHTSP-DGYKYYYNCVTGVSKWEKPEE 588 (700)
Q Consensus 558 ~~~w~e~~~~-~g~~yyyn~~t~~s~w~kp~~ 588 (700)
...|..-.+- .||.||||++|++|.||.|++
T Consensus 8 P~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~ 39 (163)
T KOG3259|consen 8 PPGWEKRMSRSSGRPYYFNTETNESQWERPSG 39 (163)
T ss_pred CchhheeccccCCCcceeccccchhhccCCCc
Confidence 4579888776 599999999999999999997
No 171
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.02 E-value=0.00046 Score=73.39 Aligned_cols=80 Identities=18% Similarity=0.479 Sum_probs=65.5
Q ss_pred CCCceEE-EeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 49 SSFAKLF-VGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 49 ~~~~tLf-VgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
....++| |++|+.++++++|++.|..+|.|..+++..+..++..+||+||+|.+..++.+++.. .. ..+.+ +.+.
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~-~~~~~--~~~~ 257 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QT-RSIGG--RPLR 257 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-cc-CcccC--cccc
Confidence 3445566 999999999999999999999999999999999999999999999999999999875 33 33333 4455
Q ss_pred eeccc
Q 005357 128 VRYAD 132 (700)
Q Consensus 128 V~~a~ 132 (700)
+.+.+
T Consensus 258 ~~~~~ 262 (285)
T KOG4210|consen 258 LEEDE 262 (285)
T ss_pred cccCC
Confidence 55544
No 172
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.01 E-value=0.0023 Score=67.36 Aligned_cols=112 Identities=17% Similarity=0.322 Sum_probs=71.6
Q ss_pred CCCceEEEeCCCCCCcHHHH------HHHHhccCCeeEEEEeecCCC-CCcccEE--EEEeCCHHHHHHHHHHhcccccC
Q 005357 49 SSFAKLFVGSVPKTAREEDI------RPLFEEHGNVIEVALIKDKKT-GQQQGCC--FIKYATSEEADRAIRALHNQHTL 119 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL------~elF~~~G~V~~i~i~~d~~T-g~skG~a--FVeF~~~edA~~Ai~~L~g~~~~ 119 (700)
.-..-|||-+|+..+..|++ .++|..||.|..|.|-+.... +...+.+ ||.|.+.|||.+||.+.++ .++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDg-s~~ 190 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDG-SLL 190 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcc-ccc
Confidence 34456899999987766652 589999999999877654311 2223334 9999999999999999977 555
Q ss_pred CCccccceeecccccc------cccCcccceeeccCCC---ccccHHHHHHHh
Q 005357 120 PGGVGPIQVRYADGER------ERLGAVEYKLFVGSLN---KQATEKEVEEIF 163 (700)
Q Consensus 120 ~g~~~~l~V~~a~~~~------~~~~~~s~~LfV~nLp---~~~teedL~~~F 163 (700)
+|+. |+..|...+- .........+|+..-- +..+.+||...-
T Consensus 191 DGr~--lkatYGTTKYCtsYLRn~~CpNp~CMyLHEpg~e~Ds~tK~el~n~q 241 (480)
T COG5175 191 DGRV--LKATYGTTKYCTSYLRNAVCPNPDCMYLHEPGPEKDSLTKDELCNSQ 241 (480)
T ss_pred cCce--EeeecCchHHHHHHHcCCCCCCCCeeeecCCCcccccccHHHHhhhh
Confidence 6654 6666654331 1112223345554332 235667776543
No 173
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.76 E-value=0.00083 Score=75.36 Aligned_cols=81 Identities=20% Similarity=0.258 Sum_probs=69.2
Q ss_pred CcccceeeccCCCccccHHHHHHHhcC-CCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSP-YGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~-fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
+..++.|||.||-.-+|.-.|+.++.+ +|.|++++|-+. |..|||.|.+.++|.+.+.+|||..+..++.+.|.
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI-----KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI-----KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh-----hcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 455788999999999999999999985 667777744332 45799999999999999999999998888899999
Q ss_pred EEecCCC
Q 005357 218 VRFADPK 224 (700)
Q Consensus 218 V~~a~~k 224 (700)
|.|+...
T Consensus 516 adf~~~d 522 (718)
T KOG2416|consen 516 ADFVRAD 522 (718)
T ss_pred eeecchh
Confidence 9998764
No 174
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.45 E-value=0.0067 Score=67.59 Aligned_cols=65 Identities=23% Similarity=0.365 Sum_probs=60.5
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHh-ccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFE-EHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~-~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~ 112 (700)
.+..+|||||+||.-++.+||-.+|+ .||.|.-+-|-.|.+-+-.||-|=|.|.+...-.+||++
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 46789999999999999999999999 899999999988877789999999999999999999986
No 175
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.39 E-value=0.0015 Score=66.85 Aligned_cols=65 Identities=20% Similarity=0.334 Sum_probs=54.6
Q ss_pred HHHHHHhc-CCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEecCCC
Q 005357 157 KEVEEIFS-PYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224 (700)
Q Consensus 157 edL~~~F~-~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~~k 224 (700)
+||..+|+ +||+|+++.|...-...-+|-++|.|...|+|++|++.||+..+ .+++|..++..-.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~---~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWY---NGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccc---cCCcceeeecCcC
Confidence 56666666 89999999877654455678899999999999999999999988 7999999987654
No 176
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.39 E-value=0.0049 Score=48.79 Aligned_cols=52 Identities=27% Similarity=0.423 Sum_probs=41.2
Q ss_pred ceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHH
Q 005357 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAI 200 (700)
Q Consensus 143 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai 200 (700)
+.|-|.+.+.+.. ++|.++|..||+|+++.+.. ...+.+|+|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~-----~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPE-----STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCC-----CCcEEEEEECCHHHHHhhC
Confidence 4577888886544 56677999999999988762 2458999999999999985
No 177
>KOG0155 consensus Transcription factor CA150 [Transcription]
Probab=96.19 E-value=0.003 Score=70.09 Aligned_cols=39 Identities=26% Similarity=0.426 Sum_probs=34.2
Q ss_pred CCCCCceeeeCCCCCcccccCCcCcccccCChhhhHHHH
Q 005357 556 PAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQ 594 (700)
Q Consensus 556 ~~~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~~~~~~~ 594 (700)
...+.|--.-|-|+|+||||..|+.|+||+|.+|+....
T Consensus 111 ipgtdWcVVwTgD~RvFFyNpktk~S~We~P~dlk~r~d 149 (617)
T KOG0155|consen 111 IPGTDWCVVWTGDNRVFFYNPKTKLSVWERPLDLKGRLD 149 (617)
T ss_pred CCCCCeEEEEeCCCceEEeCCccccccccCchhhccccc
Confidence 345669999999999999999999999999999886543
No 178
>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]
Probab=96.04 E-value=0.0024 Score=66.70 Aligned_cols=33 Identities=30% Similarity=0.520 Sum_probs=30.1
Q ss_pred CCCceeeeCCCCCcccccCCcCcccccCChhhh
Q 005357 558 KSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELT 590 (700)
Q Consensus 558 ~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~~~ 590 (700)
...|+|.++++|.+||||+.|++|+|..|....
T Consensus 150 ~k~wv~~Knes~~~yy~n~~t~esvwk~P~~~~ 182 (336)
T KOG0150|consen 150 TKEWVEGKNESGPTYYSNKRTNESVWKPPRISF 182 (336)
T ss_pred hhhcccccCCCCCCcceecCCCccccCCCCccc
Confidence 457999999999999999999999999999643
No 179
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.00 E-value=0.0058 Score=68.83 Aligned_cols=81 Identities=21% Similarity=0.322 Sum_probs=65.8
Q ss_pred CCCCCceEEEeCCCCCCcHHHHHHHHh-ccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccc
Q 005357 47 DGSSFAKLFVGSVPKTAREEDIRPLFE-EHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGP 125 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~~vteedL~elF~-~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~ 125 (700)
....+..|||.||-.-+|.-.|++|+. .+|.|++++|-+ -|..|||.|.+.++|..-+.+||+...-.++-+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk------IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK------IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHH------hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 456678899999999999999999998 556777775422 3458999999999999999999997777777677
Q ss_pred ceeecccc
Q 005357 126 IQVRYADG 133 (700)
Q Consensus 126 l~V~~a~~ 133 (700)
|.+.|...
T Consensus 514 L~adf~~~ 521 (718)
T KOG2416|consen 514 LIADFVRA 521 (718)
T ss_pred eEeeecch
Confidence 77777653
No 180
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.76 E-value=0.0089 Score=61.29 Aligned_cols=69 Identities=16% Similarity=0.302 Sum_probs=57.3
Q ss_pred CCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCC--------CCcc----cEEEEEeCCHHHHHHHHHHhcccc
Q 005357 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKT--------GQQQ----GCCFIKYATSEEADRAIRALHNQH 117 (700)
Q Consensus 50 ~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~T--------g~sk----G~aFVeF~~~edA~~Ai~~L~g~~ 117 (700)
..-.||+++||+.++-..|+++|+.||.|-.|.|-....+ |.++ --|.|+|.+...|+++.+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3467999999999999999999999999999999876544 2222 236799999999999999998755
Q ss_pred c
Q 005357 118 T 118 (700)
Q Consensus 118 ~ 118 (700)
+
T Consensus 153 I 153 (278)
T KOG3152|consen 153 I 153 (278)
T ss_pred c
Confidence 4
No 181
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.75 E-value=0.023 Score=51.01 Aligned_cols=79 Identities=18% Similarity=0.219 Sum_probs=48.2
Q ss_pred CCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecC-C------CCCcccEEEEEeCCHHHHHHHHHHhcccccCCCc
Q 005357 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDK-K------TGQQQGCCFIKYATSEEADRAIRALHNQHTLPGG 122 (700)
Q Consensus 50 ~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~-~------Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~ 122 (700)
..+-|.|=++|.. ....|.+.|++||+|++..-..+. . .-.......|.|++..+|.+||++ |+ .++.|.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG-~i~~g~ 81 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NG-TIFSGS 81 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TT-EEETTC
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CC-eEEcCc
Confidence 4566888889888 556678889999999887511100 0 011234899999999999999985 44 555543
Q ss_pred cccceeeccc
Q 005357 123 VGPIQVRYAD 132 (700)
Q Consensus 123 ~~~l~V~~a~ 132 (700)
..+-|.+.+
T Consensus 82 -~mvGV~~~~ 90 (100)
T PF05172_consen 82 -LMVGVKPCD 90 (100)
T ss_dssp -EEEEEEE-H
T ss_pred -EEEEEEEcH
Confidence 334555543
No 182
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.70 E-value=0.033 Score=53.12 Aligned_cols=57 Identities=32% Similarity=0.528 Sum_probs=46.2
Q ss_pred HHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEecCCC
Q 005357 157 KEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224 (700)
Q Consensus 157 edL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~~k 224 (700)
.+|.+.|..||+|.-|+++.+ .-+|+|.+-+.|.+|+. ++|..+ +|+.|+|+...+.
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaals-~dg~~v---~g~~l~i~LKtpd 107 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAALS-LDGIQV---NGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHHH-GCCSEE---TTEEEEEEE----
T ss_pred HHHHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHHc-cCCcEE---CCEEEEEEeCCcc
Confidence 467788999999999988765 67999999999999988 899988 8999999998764
No 183
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.65 E-value=0.04 Score=49.49 Aligned_cols=77 Identities=18% Similarity=0.231 Sum_probs=50.2
Q ss_pred ccceeeccCCCccccHHHHHHHhcCCCceeEEE-EeeC-------CCCCccceEEEEeCCHHHHHHHHHHhcCceeccCC
Q 005357 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVY-LMRD-------ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGC 212 (700)
Q Consensus 141 ~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~-I~~d-------~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~ 212 (700)
.++.|.|-+.+.. ..+.|.++|++||+|.+.. +.++ ..-.......|+|++..+|.+|+. .||+.+ +
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~---~ 79 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIF---S 79 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEE---T
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEE---c
Confidence 3456888899987 5678899999999987764 2111 011234578899999999999998 688776 3
Q ss_pred c-cceEEEecC
Q 005357 213 D-QPLTVRFAD 222 (700)
Q Consensus 213 g-r~L~V~~a~ 222 (700)
| ..+-|.+.+
T Consensus 80 g~~mvGV~~~~ 90 (100)
T PF05172_consen 80 GSLMVGVKPCD 90 (100)
T ss_dssp TCEEEEEEE-H
T ss_pred CcEEEEEEEcH
Confidence 4 345577664
No 184
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.45 E-value=0.057 Score=44.12 Aligned_cols=54 Identities=26% Similarity=0.455 Sum_probs=44.7
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhcc---CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 005357 52 AKLFVGSVPKTAREEDIRPLFEEH---GNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113 (700)
Q Consensus 52 ~tLfVgnLP~~vteedL~elF~~~---G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L 113 (700)
.+|+|.+++ +++.+||+.+|..| .....|..+.|. -|-|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 479999984 57889999999999 134678888876 5899999999999999764
No 185
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.43 E-value=0.0075 Score=61.95 Aligned_cols=52 Identities=23% Similarity=0.436 Sum_probs=41.7
Q ss_pred HHHHHHHh-ccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhccccc
Q 005357 66 EDIRPLFE-EHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHT 118 (700)
Q Consensus 66 edL~elF~-~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~ 118 (700)
|||...|+ +||+|++++|..+.. ..-+|-+||.|..+|+|++|++.||+..+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~ 135 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWY 135 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccc
Confidence 45555555 999999998877542 45678999999999999999999987554
No 186
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.43 E-value=0.11 Score=47.61 Aligned_cols=66 Identities=12% Similarity=0.144 Sum_probs=50.7
Q ss_pred CceEEEeCCCCCCcHHHHHHHHhccC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhccccc
Q 005357 51 FAKLFVGSVPKTAREEDIRPLFEEHG-NVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHT 118 (700)
Q Consensus 51 ~~tLfVgnLP~~vteedL~elF~~~G-~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~ 118 (700)
...+.+...+..++.++|..+.+.+- .|..++|++|.. .++-.+.|+|++.++|++..+.+||+.+
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPF 79 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCcc
Confidence 44555565666777778877777664 567888888743 4667899999999999999999998766
No 187
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=95.42 E-value=0.065 Score=63.57 Aligned_cols=9 Identities=22% Similarity=0.556 Sum_probs=3.6
Q ss_pred CCCCCCCCC
Q 005357 254 PPNFGDPIT 262 (700)
Q Consensus 254 ~~~~g~p~g 262 (700)
+.++|.+.+
T Consensus 1216 ~~~~Gagvg 1224 (1282)
T KOG0921|consen 1216 RANYGAGVG 1224 (1282)
T ss_pred CCCcccccc
Confidence 344444333
No 188
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.35 E-value=0.01 Score=60.88 Aligned_cols=68 Identities=21% Similarity=0.311 Sum_probs=57.0
Q ss_pred ccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCC---------CCc----cceEEEEeCCHHHHHHHHHHhcCce
Q 005357 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDEL---------KQS----RGCGFVKYSHRDMALAAINALNGIY 207 (700)
Q Consensus 141 ~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~---------g~s----rG~aFVeF~~~e~A~~Ai~~Lng~~ 207 (700)
....||+++||...+...|+++|+.||.|-.|.+-..+. +.+ ---|.|||.+...|.++.+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 356899999999999999999999999999998866521 122 2346899999999999999999988
Q ss_pred e
Q 005357 208 T 208 (700)
Q Consensus 208 ~ 208 (700)
|
T Consensus 153 I 153 (278)
T KOG3152|consen 153 I 153 (278)
T ss_pred c
Confidence 7
No 189
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.27 E-value=0.029 Score=61.95 Aligned_cols=61 Identities=16% Similarity=0.273 Sum_probs=50.2
Q ss_pred cHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEecCCC
Q 005357 155 TEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224 (700)
Q Consensus 155 teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~~k 224 (700)
+.++|...|..||+|++|-|-.. .-.|.|+|.+..+|-+|.. .++..+ +++.|+|.|-++.
T Consensus 386 t~a~ln~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~~-s~~avl---nnr~iKl~whnps 446 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAYA-SHGAVL---NNRFIKLFWHNPS 446 (526)
T ss_pred hHhhhhhhhhhcCccccccccCc-----hhhheeeeeccccccchhc-ccccee---cCceeEEEEecCC
Confidence 56899999999999999977543 2368999999999988776 577777 7899999998873
No 190
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=95.02 E-value=0.48 Score=49.90 Aligned_cols=174 Identities=11% Similarity=0.175 Sum_probs=102.0
Q ss_pred CCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecC-------CCCCcccEEEEEeCCHHHHHHHHHH----hcc
Q 005357 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDK-------KTGQQQGCCFIKYATSEEADRAIRA----LHN 115 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~-------~Tg~skG~aFVeF~~~edA~~Ai~~----L~g 115 (700)
+.--.|.|.+.||..+++-.++.+.|-+||+|++|.++.+. +..+..-.+.+-|-+.+.+-..... |..
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 34456789999999999999999999999999999999876 1123345788999998887655432 111
Q ss_pred c-ccCCCccccceeeccc-----ccc-----cc--------------cCcccceeeccCCCccccHHHH-HHH---hcCC
Q 005357 116 Q-HTLPGGVGPIQVRYAD-----GER-----ER--------------LGAVEYKLFVGSLNKQATEKEV-EEI---FSPY 166 (700)
Q Consensus 116 ~-~~~~g~~~~l~V~~a~-----~~~-----~~--------------~~~~s~~LfV~nLp~~~teedL-~~~---F~~f 166 (700)
- ..+ +...|.+.+.. ... .. ....++.|.|. +...+.++|+ ++. +..-
T Consensus 91 fK~~L--~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~ 167 (309)
T PF10567_consen 91 FKTKL--KSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNS 167 (309)
T ss_pred HHHhc--CCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccC
Confidence 0 001 11223332221 110 00 01223445554 2233333333 222 2222
Q ss_pred C----ceeEEEEeeCC---CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEecCC
Q 005357 167 G----RVEDVYLMRDE---LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223 (700)
Q Consensus 167 G----~V~~v~I~~d~---~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~~ 223 (700)
+ .|+.|+|+.-. ..-.+.||.+.|-++..|.+.++-|.-...-.+-.+...|.+...
T Consensus 168 ~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~~Iskc~fVs~~~~ 231 (309)
T PF10567_consen 168 NNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKLGISKCFFVSVQPH 231 (309)
T ss_pred CCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcccccCcceEEEEeccCc
Confidence 2 47788887654 235678999999999999999887753322111245556665543
No 191
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=94.86 E-value=0.031 Score=57.46 Aligned_cols=62 Identities=19% Similarity=0.320 Sum_probs=56.1
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 005357 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALH 114 (700)
Q Consensus 52 ~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~ 114 (700)
..|||.||...++.|.|++.|+.||+|....++.|.. ++..+-++|+|...-.|.+|++.+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r-~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR-GKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc-ccccccchhhhhcchhHHHHHHHhc
Confidence 7899999999999999999999999999887777754 7888899999999999999998874
No 192
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.79 E-value=0.0082 Score=68.69 Aligned_cols=71 Identities=18% Similarity=0.122 Sum_probs=57.6
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
.....+|||+||...+..+-++.++..+|.|.+++... |+|++|...+...+|+..|+. ..+++.....+
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~-~~~~~~kl~~~ 106 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTE-LNIDDQKLIEN 106 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcc-cCCCcchhhcc
Confidence 45667999999999999999999999999999887644 999999999999999987743 44445444444
Q ss_pred e
Q 005357 128 V 128 (700)
Q Consensus 128 V 128 (700)
+
T Consensus 107 ~ 107 (668)
T KOG2253|consen 107 V 107 (668)
T ss_pred c
Confidence 4
No 193
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.67 E-value=0.061 Score=56.17 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=42.5
Q ss_pred HHHHHHHHhccCCeeEEEEeecCCCCC-cccEEEEEeCCHHHHHHHHHHhccccc
Q 005357 65 EEDIRPLFEEHGNVIEVALIKDKKTGQ-QQGCCFIKYATSEEADRAIRALHNQHT 118 (700)
Q Consensus 65 eedL~elF~~~G~V~~i~i~~d~~Tg~-skG~aFVeF~~~edA~~Ai~~L~g~~~ 118 (700)
|+++.+.+++||.|..|.|..+..--. ..--.||+|+..++|.+|+-.||+.++
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyF 354 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYF 354 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCcee
Confidence 456788899999999999888753211 123479999999999999999988555
No 194
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.59 E-value=0.062 Score=60.45 Aligned_cols=81 Identities=14% Similarity=0.200 Sum_probs=58.6
Q ss_pred ccccccCcccceeeccCCCccccHHHHHHHhcC--CCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceecc
Q 005357 133 GERERLGAVEYKLFVGSLNKQATEKEVEEIFSP--YGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMR 210 (700)
Q Consensus 133 ~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~--fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~ 210 (700)
.++.+.....|.|.|+.|++.+-+|+|+.+|+. +-++.+|.+-.++ -=||+|++.+||+.|++.|.....-+
T Consensus 166 gekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------nWyITfesd~DAQqAykylreevk~f 239 (684)
T KOG2591|consen 166 GEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------NWYITFESDTDAQQAYKYLREEVKTF 239 (684)
T ss_pred ccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------ceEEEeecchhHHHHHHHHHHHHHhh
Confidence 334444555678889999999999999999975 6788888875542 23899999999999998876544311
Q ss_pred CCccceEEEe
Q 005357 211 GCDQPLTVRF 220 (700)
Q Consensus 211 g~gr~L~V~~ 220 (700)
-++.|..++
T Consensus 240 -qgKpImARI 248 (684)
T KOG2591|consen 240 -QGKPIMARI 248 (684)
T ss_pred -cCcchhhhh
Confidence 355554443
No 195
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=94.39 E-value=0.37 Score=57.13 Aligned_cols=64 Identities=6% Similarity=0.202 Sum_probs=46.6
Q ss_pred CccccHHHHHHHhcCCCc-----eeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEecCCCC
Q 005357 151 NKQATEKEVEEIFSPYGR-----VEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKR 225 (700)
Q Consensus 151 p~~~teedL~~~F~~fG~-----V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~~k~ 225 (700)
.+.++..+|...+..-+. |-.|+|+.+ |.||+.... .|...++.|++..+ +++.|.|+.++...
T Consensus 496 ~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~-------~s~v~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 564 (629)
T PRK11634 496 DDGVEVRHIVGAIANEGDISSRYIGNIKLFAS-------HSTIELPKG-MPGEVLQHFTRTRI---LNKPMNMQLLGDAQ 564 (629)
T ss_pred ccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC-------ceEEEcChh-hHHHHHHHhccccc---cCCceEEEECCCCC
Confidence 345777777777665543 455777655 899998654 47888888988777 78999999886443
No 196
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.38 E-value=0.049 Score=64.39 Aligned_cols=79 Identities=16% Similarity=0.257 Sum_probs=67.1
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
....++|||++|..++....|...|..||.|..|.+-.- .-|++|.|++.+.+..|++.+.+ ..+.+-.++++
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~rg-ap~G~P~~r~r 524 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMRG-APLGGPPRRLR 524 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHhc-CcCCCCCcccc
Confidence 456789999999999999999999999999999887443 34999999999999999999966 55566667788
Q ss_pred eecccc
Q 005357 128 VRYADG 133 (700)
Q Consensus 128 V~~a~~ 133 (700)
|.+++.
T Consensus 525 vdla~~ 530 (975)
T KOG0112|consen 525 VDLASP 530 (975)
T ss_pred cccccC
Confidence 888854
No 197
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.31 E-value=0.098 Score=42.77 Aligned_cols=55 Identities=16% Similarity=0.264 Sum_probs=44.0
Q ss_pred cceeeccCCCccccHHHHHHHhcCC---CceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHh
Q 005357 142 EYKLFVGSLNKQATEKEVEEIFSPY---GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINAL 203 (700)
Q Consensus 142 s~~LfV~nLp~~~teedL~~~F~~f---G~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~L 203 (700)
..+|+|.+++ +.+.+||+.+|..| .....|+.+.|. -|-|.|.+.+.|.+|+.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 3579999986 58889999999988 235567777662 5889999999999999865
No 198
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.25 E-value=0.18 Score=55.75 Aligned_cols=70 Identities=16% Similarity=0.244 Sum_probs=59.4
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccC
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHG-NVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTL 119 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G-~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~ 119 (700)
...++.|+|-.+|..++-.||..|+..+- .|.+|+|++|.. .++=..+|+|++.++|..+.+.+||+.+.
T Consensus 71 ~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 71 ASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 33488999999999999999999988664 688999999753 34557999999999999999999987763
No 199
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=94.04 E-value=0.032 Score=60.68 Aligned_cols=78 Identities=26% Similarity=0.397 Sum_probs=60.7
Q ss_pred ceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEecC
Q 005357 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222 (700)
Q Consensus 143 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~ 222 (700)
++|||+||.+.++..||+.+|...-.-..-.|+.. .||+||++.|..-|.+|++.++|+.-+ .|+++.|...-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-----~gyafvd~pdq~wa~kaie~~sgk~el--qGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-----SGYAFVDCPDQQWANKAIETLSGKVEL--QGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-----cceeeccCCchhhhhhhHHhhchhhhh--cCceeeccchh
Confidence 47899999999999999999976421111112222 579999999999999999999998765 57889999888
Q ss_pred CCCCC
Q 005357 223 PKRPR 227 (700)
Q Consensus 223 ~k~~r 227 (700)
+++.|
T Consensus 75 ~kkqr 79 (584)
T KOG2193|consen 75 PKKQR 79 (584)
T ss_pred hHHHH
Confidence 77543
No 200
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.94 E-value=0.03 Score=59.77 Aligned_cols=80 Identities=18% Similarity=0.337 Sum_probs=62.0
Q ss_pred cceeeccCCCccccHHHHH---HHhcCCCceeEEEEeeCCC--CC--ccceEEEEeCCHHHHHHHHHHhcCceeccCCcc
Q 005357 142 EYKLFVGSLNKQATEKEVE---EIFSPYGRVEDVYLMRDEL--KQ--SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQ 214 (700)
Q Consensus 142 s~~LfV~nLp~~~teedL~---~~F~~fG~V~~v~I~~d~~--g~--srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr 214 (700)
.+-+||-+|+..+.++++. +.|..||.|..|.+.++.. .. ...-++|+|+..|+|..||...+|... +++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~---dg~ 153 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVD---DGR 153 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHh---hhh
Confidence 3568899999887666554 4788899999999888651 11 122369999999999999999999776 778
Q ss_pred ceEEEecCCC
Q 005357 215 PLTVRFADPK 224 (700)
Q Consensus 215 ~L~V~~a~~k 224 (700)
.|++.+...+
T Consensus 154 ~lka~~gttk 163 (327)
T KOG2068|consen 154 ALKASLGTTK 163 (327)
T ss_pred hhHHhhCCCc
Confidence 8888887765
No 201
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=93.87 E-value=0.055 Score=58.50 Aligned_cols=75 Identities=19% Similarity=0.265 Sum_probs=58.5
Q ss_pred ceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCC----CCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDEL----KQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 143 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~----g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
..|.|.||...++.+.+..+|...|+|.++.|+-... ....-.|||.|.|...+..|-. |.+..++ |+.|+|
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfv---draliv 83 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFV---DRALIV 83 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceee---eeeEEE
Confidence 3799999999999999999999999999998876421 2345589999999998888766 4444442 566666
Q ss_pred Eec
Q 005357 219 RFA 221 (700)
Q Consensus 219 ~~a 221 (700)
..+
T Consensus 84 ~p~ 86 (479)
T KOG4676|consen 84 RPY 86 (479)
T ss_pred Eec
Confidence 544
No 202
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.57 E-value=0.08 Score=52.52 Aligned_cols=75 Identities=9% Similarity=0.051 Sum_probs=46.7
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhc-cCCe---eEEEEeecC-CCC-CcccEEEEEeCCHHHHHHHHHHhcccccCCC
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEE-HGNV---IEVALIKDK-KTG-QQQGCCFIKYATSEEADRAIRALHNQHTLPG 121 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~-~G~V---~~i~i~~d~-~Tg-~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g 121 (700)
.....+|.|++||++.||+++.+.+.. ++.. ..+.-.... ..+ ..-.-|||.|.+.+++...++.+++..+.+.
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 345679999999999999999997776 5554 222211221 111 2235699999999999999999988776655
Q ss_pred c
Q 005357 122 G 122 (700)
Q Consensus 122 ~ 122 (700)
+
T Consensus 84 k 84 (176)
T PF03467_consen 84 K 84 (176)
T ss_dssp T
T ss_pred C
Confidence 4
No 203
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.52 E-value=0.23 Score=47.08 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=54.3
Q ss_pred cccceeeccCCCccc----cHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccc
Q 005357 140 AVEYKLFVGSLNKQA----TEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQP 215 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~----teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~ 215 (700)
..-.+|.|.=|..++ +-+.|...++.||.|..|.+.- +-.|.|.|.|..+|.+|+.++....- |..
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG------rqsavVvF~d~~SAC~Av~Af~s~~p----gtm 153 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG------RQSAVVVFKDITSACKAVSAFQSRAP----GTM 153 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC------CceEEEEehhhHHHHHHHHhhcCCCC----Cce
Confidence 344577776555543 3344556678899999998864 45799999999999999999887543 778
Q ss_pred eEEEecC
Q 005357 216 LTVRFAD 222 (700)
Q Consensus 216 L~V~~a~ 222 (700)
+.+.|-.
T Consensus 154 ~qCsWqq 160 (166)
T PF15023_consen 154 FQCSWQQ 160 (166)
T ss_pred EEeeccc
Confidence 8888754
No 204
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.48 E-value=0.18 Score=56.88 Aligned_cols=60 Identities=18% Similarity=0.388 Sum_probs=50.6
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhc--cCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEE--HGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHN 115 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~--~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g 115 (700)
...|.|+|+.|+.++-+|+|+-||+. |-++++|.+..+.+ =||.|++.+||..|.+.|..
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylre 234 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLRE 234 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHHH
Confidence 45778899999999999999999974 56788898876643 59999999999999988753
No 205
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.21 E-value=0.67 Score=42.44 Aligned_cols=77 Identities=14% Similarity=0.103 Sum_probs=56.2
Q ss_pred ceeeccCCCccccHHHHHHHhcCCC-ceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEe
Q 005357 143 YKLFVGSLNKQATEKEVEEIFSPYG-RVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220 (700)
Q Consensus 143 ~~LfV~nLp~~~teedL~~~F~~fG-~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~ 220 (700)
..+.+...++.++.++|..+.+.+- .|+.++|++|.. .++-.++++|.+.++|++..+.+||+.+-..+.....|-|
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~-pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~Chvvf 91 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT-PNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVVF 91 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC-CceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEEE
Confidence 3444455566677778877777664 477888888754 3677899999999999999999999988444444444444
No 206
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=93.18 E-value=0.29 Score=42.34 Aligned_cols=53 Identities=26% Similarity=0.488 Sum_probs=39.6
Q ss_pred EEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 005357 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALH 114 (700)
Q Consensus 54 LfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~ 114 (700)
||--.+|.+....||.++|+.||.|. |..+.|. -|||.+.+.+.|..++..+.
T Consensus 11 VFhltFPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 11 VFHLTFPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp EEEEE--TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred EEEEeCchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 44444999999999999999999865 4444553 79999999999999998873
No 207
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=92.94 E-value=0.091 Score=56.17 Aligned_cols=78 Identities=21% Similarity=0.373 Sum_probs=55.1
Q ss_pred CCceEEEeCCCCCCcHHHHH---HHHhccCCeeEEEEeecCC----CCCcccEEEEEeCCHHHHHHHHHHhcccccCCCc
Q 005357 50 SFAKLFVGSVPKTAREEDIR---PLFEEHGNVIEVALIKDKK----TGQQQGCCFIKYATSEEADRAIRALHNQHTLPGG 122 (700)
Q Consensus 50 ~~~tLfVgnLP~~vteedL~---elF~~~G~V~~i~i~~d~~----Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~ 122 (700)
-..-+||-+|+.++..+++. +.|..||.|.+|.+.++.. .+... -++|.|+..|||..||...++ .+++++
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~-s~yITy~~~eda~rci~~v~g-~~~dg~ 153 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTC-SVYITYEEEEDADRCIDDVDG-FVDDGR 153 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCC-cccccccchHhhhhHHHHhhh-HHhhhh
Confidence 34568899998776554443 5789999999999888662 12222 389999999999999999866 445554
Q ss_pred cccceeecc
Q 005357 123 VGPIQVRYA 131 (700)
Q Consensus 123 ~~~l~V~~a 131 (700)
. ++..+.
T Consensus 154 ~--lka~~g 160 (327)
T KOG2068|consen 154 A--LKASLG 160 (327)
T ss_pred h--hHHhhC
Confidence 3 444444
No 208
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.92 E-value=0.54 Score=53.54 Aligned_cols=130 Identities=16% Similarity=0.238 Sum_probs=74.3
Q ss_pred CCCCceEEEeCCCCC-CcHHHHHHHHhcc----CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCc
Q 005357 48 GSSFAKLFVGSVPKT-AREEDIRPLFEEH----GNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGG 122 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~-vteedL~elF~~~----G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~ 122 (700)
...+++|-|.|+.++ +..+||+-+|+.| |.|++|.|.... |-....++ +..++ .
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSe------------FGkeRM~e---EeV~G------P 229 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSE------------FGKERMKE---EEVHG------P 229 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhh------------hhHHHhhh---hcccC------C
Confidence 456889999999976 8889999998876 589999886643 22222211 12222 1
Q ss_pred cccc--eeecccccccccCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHH
Q 005357 123 VGPI--QVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAI 200 (700)
Q Consensus 123 ~~~l--~V~~a~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai 200 (700)
.+.| .+....... ..+..-++-.+.-++.|+ +..++ --||.|+|++++.|.+.+
T Consensus 230 ~~el~~~~e~~~~s~--------------sD~ee~~~~~~~kLR~Yq-~~rLk---------YYyAVvecDsi~tA~~vY 285 (650)
T KOG2318|consen 230 PKELFKPVEEYKESE--------------SDDEEEEDVDREKLRQYQ-LNRLK---------YYYAVVECDSIETAKAVY 285 (650)
T ss_pred hhhhccccccCcccc--------------cchhhhhhHHHHHHHHHH-hhhhe---------eEEEEEEecCchHHHHHH
Confidence 1111 111111000 111111111233333332 11111 128999999999999999
Q ss_pred HHhcCceeccCCccceEEEecCC
Q 005357 201 NALNGIYTMRGCDQPLTVRFADP 223 (700)
Q Consensus 201 ~~Lng~~~~~g~gr~L~V~~a~~ 223 (700)
+.|+|..+-. .+..|.++|--.
T Consensus 286 e~CDG~EfEs-S~~~~DLRFIPD 307 (650)
T KOG2318|consen 286 EECDGIEFES-SANKLDLRFIPD 307 (650)
T ss_pred HhcCcceecc-ccceeeeeecCC
Confidence 9999988743 356777777643
No 209
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=92.57 E-value=0.35 Score=41.86 Aligned_cols=55 Identities=24% Similarity=0.469 Sum_probs=40.1
Q ss_pred ceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcC
Q 005357 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNG 205 (700)
Q Consensus 143 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng 205 (700)
...||+ +|.+....||.++|+.||.|.--.| .| .-|||...+++.|..|+..+.-
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi-~d------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI-ND------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEE-CT------TEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEE-cC------CcEEEEeecHHHHHHHHHHhcc
Confidence 345554 9999999999999999998754433 33 3799999999999999988764
No 210
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.40 E-value=0.23 Score=49.24 Aligned_cols=85 Identities=16% Similarity=0.169 Sum_probs=53.6
Q ss_pred ccceeeccCCCccccHHHHHHHhcC-CCce---eEEEEeeCC--C-CCccceEEEEeCCHHHHHHHHHHhcCceeccCCc
Q 005357 141 VEYKLFVGSLNKQATEKEVEEIFSP-YGRV---EDVYLMRDE--L-KQSRGCGFVKYSHRDMALAAINALNGIYTMRGCD 213 (700)
Q Consensus 141 ~s~~LfV~nLp~~~teedL~~~F~~-fG~V---~~v~I~~d~--~-g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~g 213 (700)
...+|.|++||.++|++++.+.+.. ++.. ..+...... . ......|+|.|.+.+++...++.++|+.+.+..|
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3468999999999999999998876 6654 233322222 1 1233468999999999999999999988865333
Q ss_pred --cceEEEecCCCC
Q 005357 214 --QPLTVRFADPKR 225 (700)
Q Consensus 214 --r~L~V~~a~~k~ 225 (700)
....|++|--.+
T Consensus 86 ~~~~~~VE~Apyqk 99 (176)
T PF03467_consen 86 NEYPAVVEFAPYQK 99 (176)
T ss_dssp -EEEEEEEE-SS--
T ss_pred CCcceeEEEcchhc
Confidence 355677776543
No 211
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.36 E-value=0.39 Score=45.53 Aligned_cols=62 Identities=16% Similarity=0.299 Sum_probs=49.1
Q ss_pred CCCCCceEEEeCCCCCCc-HHHHH---HHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc
Q 005357 47 DGSSFAKLFVGSVPKTAR-EEDIR---PLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHN 115 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~~vt-eedL~---elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g 115 (700)
.+..-.+|.|+=|..++. .|||+ ..++.||+|.+|.+.-.. -|.|.|+|..+|.+|+.+++.
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq-------savVvF~d~~SAC~Av~Af~s 147 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ-------SAVVVFKDITSACKAVSAFQS 147 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc-------eEEEEehhhHHHHHHHHhhcC
Confidence 356788999988877753 34444 556789999999886543 699999999999999999865
No 212
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.38 E-value=0.49 Score=39.27 Aligned_cols=50 Identities=22% Similarity=0.319 Sum_probs=38.7
Q ss_pred CCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccC
Q 005357 61 KTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTL 119 (700)
Q Consensus 61 ~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~ 119 (700)
..++-+||+..+..|+- .+|..|+. || ||.|.|.++|++|.+..++..++
T Consensus 10 ~~~~v~d~K~~Lr~y~~---~~I~~d~t-----Gf-YIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW---DRIRDDRT-----GF-YIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred CCccHHHHHHHHhcCCc---ceEEecCC-----EE-EEEECChHHHHHHHHhcCCCEEE
Confidence 36788999999999963 34445543 45 89999999999999998776553
No 213
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.27 E-value=0.53 Score=52.16 Aligned_cols=79 Identities=13% Similarity=0.158 Sum_probs=63.8
Q ss_pred cceeeccCCCccccHHHHHHHhcCCC-ceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEe
Q 005357 142 EYKLFVGSLNKQATEKEVEEIFSPYG-RVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220 (700)
Q Consensus 142 s~~LfV~nLp~~~teedL~~~F~~fG-~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~ 220 (700)
+..|+|-.+|-.++-.||..|+..|- .|.+++|++|.. .++-.++|+|.+.++|...++.+||+.|-..+.....|-|
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~-pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e~Chll~ 152 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM-PNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPEVCHLLY 152 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC-CceEEEEEEeccchhHHHHHHHcCCCcCCCCCccceeEEE
Confidence 67899999999999999999998765 589999999643 3466789999999999999999999988554444444444
Q ss_pred c
Q 005357 221 A 221 (700)
Q Consensus 221 a 221 (700)
.
T Consensus 153 V 153 (493)
T KOG0804|consen 153 V 153 (493)
T ss_pred E
Confidence 3
No 214
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=91.14 E-value=0.79 Score=38.69 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=36.6
Q ss_pred CccccHHHHHHHhcCCC-----ceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEec
Q 005357 151 NKQATEKEVEEIFSPYG-----RVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221 (700)
Q Consensus 151 p~~~teedL~~~F~~fG-----~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a 221 (700)
-+.++..+|..++...+ .|-+|+|..+ |+||+-... .|..+++.|++..+ ++++|+|+.|
T Consensus 10 ~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~~-~a~~v~~~l~~~~~---~gk~v~ve~A 74 (74)
T PF03880_consen 10 KDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPEE-VAEKVLEALNGKKI---KGKKVRVERA 74 (74)
T ss_dssp GGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-TT--HHHHHHHHTT--S---SS----EEE-
T ss_pred ccCCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECHH-HHHHHHHHhcCCCC---CCeeEEEEEC
Confidence 34578888888887654 3667888765 899998765 68889999999888 7999999865
No 215
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=91.06 E-value=0.17 Score=44.42 Aligned_cols=69 Identities=13% Similarity=0.179 Sum_probs=44.9
Q ss_pred EEEEeCCHHHHHHHHHHhcccccCCCccccceeeccccc-----ccccCcccceeeccCCCccccHHHHHHHhc
Q 005357 96 CFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGE-----RERLGAVEYKLFVGSLNKQATEKEVEEIFS 164 (700)
Q Consensus 96 aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~~a~~~-----~~~~~~~s~~LfV~nLp~~~teedL~~~F~ 164 (700)
|+|.|++.+-|++.++.-.-...+++....+++..-... ........++|.|.||++..++++|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 689999999999999853222223333333443322211 112345678899999999999999988654
No 216
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=90.86 E-value=0.41 Score=47.85 Aligned_cols=62 Identities=24% Similarity=0.262 Sum_probs=44.6
Q ss_pred cHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhc--CceeccCCccceEEEecCCC
Q 005357 155 TEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALN--GIYTMRGCDQPLTVRFADPK 224 (700)
Q Consensus 155 teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Ln--g~~~~~g~gr~L~V~~a~~k 224 (700)
..+.|+++|..|+.+..+.+++. -+-..|.|.+.++|.+|+..|+ +..+ .+..++|-|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~~---~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTSF---NGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSEE---TTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhccccccc---CCCceEEEEcccc
Confidence 45789999999998887766654 4467999999999999999999 8877 6788999998554
No 217
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.84 E-value=1.2 Score=47.18 Aligned_cols=63 Identities=19% Similarity=0.262 Sum_probs=46.1
Q ss_pred CceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCc
Q 005357 51 FAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGG 122 (700)
Q Consensus 51 ~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~ 122 (700)
..=|-|-+++..-. ..|..+|++||+|++...-.+-+ +-+|.|.+..+|+|||.+ +..+|++.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~ngN------wMhirYssr~~A~KALsk--ng~ii~g~ 259 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSNGN------WMHIRYSSRTHAQKALSK--NGTIIDGD 259 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCCCCc------eEEEEecchhHHHHhhhh--cCeeeccc
Confidence 34466667776533 45677899999999887654333 999999999999999986 34555543
No 218
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=90.00 E-value=0.2 Score=58.96 Aligned_cols=74 Identities=24% Similarity=0.343 Sum_probs=62.4
Q ss_pred eeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEecCCC
Q 005357 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224 (700)
Q Consensus 145 LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~~k 224 (700)
.++.|..-+.+-.-|..+|..||.|.+++..++ -..+.|+|.+.|.|..|+++|+|+.... .|-+.+|.|++.-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-----~N~alvs~~s~~sai~a~dAl~gkevs~-~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-----LNMALVSFSSVESAILALDALQGKEVSV-TGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccc-----ccchhhhhHHHHHHHHhhhhhcCCcccc-cCCceeEEecccc
Confidence 445555666777889999999999999998877 3489999999999999999999998754 4788999999875
No 219
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=88.47 E-value=0.43 Score=49.56 Aligned_cols=156 Identities=15% Similarity=0.259 Sum_probs=80.7
Q ss_pred CCcHHHHHHHHhcc-C--CeeEEEEeecCCCCCcccEEEEEeCCH----HHHHHHHHHhcccccC-CCccccceeecccc
Q 005357 62 TAREEDIRPLFEEH-G--NVIEVALIKDKKTGQQQGCCFIKYATS----EEADRAIRALHNQHTL-PGGVGPIQVRYADG 133 (700)
Q Consensus 62 ~vteedL~elF~~~-G--~V~~i~i~~d~~Tg~skG~aFVeF~~~----edA~~Ai~~L~g~~~~-~g~~~~l~V~~a~~ 133 (700)
.++.=||.+-+... . ...+|+|.... .-||.|+-+ --.++.+.+|++..+. .|-.-.|+|+.+..
T Consensus 48 sisnwdlmerlk~aid~~q~dsckiresn-------id~iifeael~n~gimkk~l~~ldgfsiklsgfad~lkvka~ea 120 (445)
T KOG2891|consen 48 SISNWDLMERLKGAIDNHQFDSCKIRESN-------IDFIIFEAELENKGIMKKFLACLDGFSIKLSGFADILKVKAAEA 120 (445)
T ss_pred ccchHHHHHHHHhhcccccccceeecccc-------cceEEeeHhhhhhhHHHHHHHHhcCCeeeecccchHHhhhHHhh
Confidence 34444555444422 1 23456654432 678888644 3456667777664432 12222333332211
Q ss_pred c--------------------ccccCcccceeeccCCCcc------------ccHHHHHHHhcCCCceeEEEEeeCC---
Q 005357 134 E--------------------RERLGAVEYKLFVGSLNKQ------------ATEKEVEEIFSPYGRVEDVYLMRDE--- 178 (700)
Q Consensus 134 ~--------------------~~~~~~~s~~LfV~nLp~~------------~teedL~~~F~~fG~V~~v~I~~d~--- 178 (700)
+ ....+....+||+.+||-. -+++.|+..|+.||.|..|+|..-+
T Consensus 121 kidfpsrhdwdd~fm~~kdmdemkpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr 200 (445)
T KOG2891|consen 121 KIDFPSRHDWDDFFMDAKDMDEMKPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLR 200 (445)
T ss_pred cCCCCcccchHHHHhhhhhhhccCCCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhH
Confidence 1 1111233457888777632 3678899999999999998875431
Q ss_pred ---CCCcc-----ceEE---------EEeCCHHHHHHHHHHhcCcee-ccCCcc----ceEEEecCCC
Q 005357 179 ---LKQSR-----GCGF---------VKYSHRDMALAAINALNGIYT-MRGCDQ----PLTVRFADPK 224 (700)
Q Consensus 179 ---~g~sr-----G~aF---------VeF~~~e~A~~Ai~~Lng~~~-~~g~gr----~L~V~~a~~k 224 (700)
+++.. ||+| |.|...-.-..|+.+|.|..+ ..++++ .++|.|.+.+
T Consensus 201 ~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 201 EEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 33333 3332 222222233445666666544 222333 5677777665
No 220
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=88.17 E-value=1.4 Score=36.60 Aligned_cols=49 Identities=14% Similarity=0.240 Sum_probs=38.8
Q ss_pred cccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceec
Q 005357 153 QATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTM 209 (700)
Q Consensus 153 ~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~ 209 (700)
.++.+||+..+++|+- .+|..|++ || ||.|.+.++|+++....++..++
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~t----Gf-YIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDRT----GF-YIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecCC----EE-EEEECChHHHHHHHHhcCCCEEE
Confidence 4678899999999953 33444533 33 89999999999999999998874
No 221
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=87.24 E-value=0.35 Score=57.09 Aligned_cols=73 Identities=19% Similarity=0.297 Sum_probs=60.0
Q ss_pred eEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceeeccc
Q 005357 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYAD 132 (700)
Q Consensus 53 tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~~a~ 132 (700)
+.++-|..-..+..-|..+|..||+|.+++.+++-+ .|.|+|.+.|.|-.|+++|+|+.+...+ .+.+|.+++
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g-~Ps~V~~ak 372 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTG-APSRVSFAK 372 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccC-CceeEEecc
Confidence 445555666778889999999999999999999877 9999999999999999999997765433 456777664
No 222
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=85.33 E-value=2.2 Score=40.87 Aligned_cols=69 Identities=17% Similarity=0.300 Sum_probs=45.2
Q ss_pred CCceEEEeCCC-----C-CCcH---HHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCC
Q 005357 50 SFAKLFVGSVP-----K-TARE---EDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLP 120 (700)
Q Consensus 50 ~~~tLfVgnLP-----~-~vte---edL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~ 120 (700)
...||.|.=+. . .+++ .+|.+.|..||+|.=|+++.+ .-+|.|.+-+.|-+|+. +++..+ .
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v-~ 95 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQV-N 95 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEE-T
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEE-C
Confidence 44566666554 1 2332 367788899999988887765 57999999999999997 556454 4
Q ss_pred Ccccccee
Q 005357 121 GGVGPIQV 128 (700)
Q Consensus 121 g~~~~l~V 128 (700)
|+...|+.
T Consensus 96 g~~l~i~L 103 (146)
T PF08952_consen 96 GRTLKIRL 103 (146)
T ss_dssp TEEEEEEE
T ss_pred CEEEEEEe
Confidence 54433333
No 223
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=84.55 E-value=4.6 Score=44.33 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=31.1
Q ss_pred CCCCceEEEeCCCCC-CcHHHHHHHHhcc----CCeeEEEEeec
Q 005357 48 GSSFAKLFVGSVPKT-AREEDIRPLFEEH----GNVIEVALIKD 86 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~-vteedL~elF~~~----G~V~~i~i~~d 86 (700)
.....+|-|-||.++ +..+||+.+|+.| |.|..|.|...
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 566789999999976 7889999998866 57777877554
No 224
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=84.15 E-value=1.3 Score=42.09 Aligned_cols=114 Identities=12% Similarity=0.108 Sum_probs=65.9
Q ss_pred EEEeCC-C-CCCcHHHHHHHHhc-cCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceeec
Q 005357 54 LFVGSV-P-KTAREEDIRPLFEE-HGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRY 130 (700)
Q Consensus 54 LfVgnL-P-~~vteedL~elF~~-~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~~ 130 (700)
..||.+ . .+.+-+.|.+.+.+ ++....+++..- ..++..+.|.+++|++++++. +...+.+.. +.+..
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~--~p~~~~~~~--~~l~~ 88 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKG--GPWNFNGHF--LILQR 88 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEec--ccccccccc--hhhhh
Confidence 444444 2 34556666665544 232223333221 225899999999999999874 434444432 33322
Q ss_pred ccc-ccc---ccCcccceeeccCCCcc-ccHHHHHHHhcCCCceeEEEEee
Q 005357 131 ADG-ERE---RLGAVEYKLFVGSLNKQ-ATEKEVEEIFSPYGRVEDVYLMR 176 (700)
Q Consensus 131 a~~-~~~---~~~~~s~~LfV~nLp~~-~teedL~~~F~~fG~V~~v~I~~ 176 (700)
-+. ... .......-|.|.|||.. .+++-|+.+.+.+|++.+++...
T Consensus 89 W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 89 WSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred hcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 221 111 11122334777899988 56677889999999999887543
No 225
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=83.54 E-value=1.9 Score=43.07 Aligned_cols=60 Identities=18% Similarity=0.318 Sum_probs=41.1
Q ss_pred cHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhc--ccccCCCccccceeeccc
Q 005357 64 REEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALH--NQHTLPGGVGPIQVRYAD 132 (700)
Q Consensus 64 teedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~--g~~~~~g~~~~l~V~~a~ 132 (700)
..+.|+++|..|+++..+.+++..+ -..|.|.+.++|.+|...|+ +..+ .|. .+++.++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFr------Ri~v~f~~~~~A~~~r~~l~~~~~~~-~g~--~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFR------RIRVVFESPESAQRARQLLHWDGTSF-NGK--RLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTT------EEEEE-SSTTHHHHHHHTST--TSEE-TTE--E-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCC------EEEEEeCCHHHHHHHHHHhccccccc-CCC--ceEEEEcc
Confidence 5688999999999999988887653 68999999999999999987 4333 333 26666553
No 226
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=82.98 E-value=0.74 Score=51.32 Aligned_cols=78 Identities=17% Similarity=0.232 Sum_probs=57.4
Q ss_pred CCCCCCceEEEeCCCCCC-cHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccc
Q 005357 46 VDGSSFAKLFVGSVPKTA-REEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVG 124 (700)
Q Consensus 46 ~~~~~~~tLfVgnLP~~v-teedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~ 124 (700)
.-..++|.|-+..+++.. |.++|...|..||+|+.|.|-.... .|.|.|.+..+|-+|... ++ ..+++ +
T Consensus 367 ~~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~~s-~~-avlnn--r 436 (526)
T KOG2135|consen 367 HAVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAYAS-HG-AVLNN--R 436 (526)
T ss_pred chhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchhcc-cc-ceecC--c
Confidence 334567788888888765 5689999999999999998865433 799999999999777653 34 33433 4
Q ss_pred cceeecccc
Q 005357 125 PIQVRYADG 133 (700)
Q Consensus 125 ~l~V~~a~~ 133 (700)
.|+|.|-+.
T Consensus 437 ~iKl~whnp 445 (526)
T KOG2135|consen 437 FIKLFWHNP 445 (526)
T ss_pred eeEEEEecC
Confidence 577777654
No 227
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=82.94 E-value=11 Score=39.70 Aligned_cols=54 Identities=11% Similarity=0.332 Sum_probs=38.6
Q ss_pred CCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHH
Q 005357 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSE 104 (700)
Q Consensus 46 ~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~e 104 (700)
........|||+||++++.-.||+..+.+.+-+ -..|.+ ....|-||+.|.|..
T Consensus 325 ~~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~isw----kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 325 VEAGAKTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISW----KGHFGKCFLHFGNRK 378 (396)
T ss_pred ccCccccceeeccCccccchHHHHHHHHhcCCC-ceeEee----ecCCcceeEecCCcc
Confidence 334456679999999999999999999887632 222322 224568999997743
No 228
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=81.59 E-value=3.6 Score=43.61 Aligned_cols=78 Identities=21% Similarity=0.142 Sum_probs=53.8
Q ss_pred cceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEec
Q 005357 142 EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221 (700)
Q Consensus 142 s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a 221 (700)
+.-|.|.+++.. ...-|..+|++||+|.+..-- ..-.+-+|+|.++.+|.+||. .||++| . ++.-|-|+-+
T Consensus 197 D~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~-----~ngNwMhirYssr~~A~KALs-kng~ii-~-g~vmiGVkpC 267 (350)
T KOG4285|consen 197 DTWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP-----SNGNWMHIRYSSRTHAQKALS-KNGTII-D-GDVMIGVKPC 267 (350)
T ss_pred cceEEEeccCcc-chhHHHHHHHhhCeeeeeecC-----CCCceEEEEecchhHHHHhhh-hcCeee-c-cceEEeeeec
Confidence 445777777764 456788999999998876543 223478999999999999998 477766 1 2334446655
Q ss_pred CCCCCCC
Q 005357 222 DPKRPRP 228 (700)
Q Consensus 222 ~~k~~r~ 228 (700)
..|....
T Consensus 268 tDksvi~ 274 (350)
T KOG4285|consen 268 TDKSVIN 274 (350)
T ss_pred CCHHHhc
Confidence 5554433
No 229
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=80.58 E-value=0.82 Score=52.93 Aligned_cols=70 Identities=20% Similarity=0.208 Sum_probs=58.4
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~ 219 (700)
....++||+|+.+.+..+-++.+...+|.|..+...+ |+|++|.....+.+|+..|+-..+ ++..+.+.
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~---~~~kl~~~ 106 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNI---DDQKLIEN 106 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCC---Ccchhhcc
Confidence 3456899999999999999999999999988876543 899999999999999998876655 56666655
Q ss_pred e
Q 005357 220 F 220 (700)
Q Consensus 220 ~ 220 (700)
.
T Consensus 107 ~ 107 (668)
T KOG2253|consen 107 V 107 (668)
T ss_pred c
Confidence 4
No 230
>KOG0152 consensus Spliceosomal protein FBP11/Splicing factor PRP40 [RNA processing and modification]
Probab=79.92 E-value=0.39 Score=54.60 Aligned_cols=37 Identities=41% Similarity=0.671 Sum_probs=33.4
Q ss_pred CCCCCceeeeCCCCCcccccCCcCcccccCChhhhHH
Q 005357 556 PAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLF 592 (700)
Q Consensus 556 ~~~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~~~~~ 592 (700)
.....|.+|...||+.||||++|..+.|||++++...
T Consensus 123 a~~p~~~~~~~~~~r~~~~nci~el~~~ek~k~~~~r 159 (463)
T KOG0152|consen 123 AGDPRWSEHISEDGRKIYENCITELSQREKEKKLEDR 159 (463)
T ss_pred ccccchhhccchhhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3456899999999999999999999999999998766
No 231
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=77.81 E-value=6.6 Score=33.03 Aligned_cols=57 Identities=14% Similarity=0.314 Sum_probs=33.1
Q ss_pred CCCcHHHHHHHHhccC-----CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceee
Q 005357 61 KTAREEDIRPLFEEHG-----NVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVR 129 (700)
Q Consensus 61 ~~vteedL~elF~~~G-----~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~ 129 (700)
..++..+|..++...+ .|-.|+|..+ |+||+.... .|+++++.|++..+ .| +.++|+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~-~g--k~v~ve 72 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKI-KG--KKVRVE 72 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--S-SS------EE
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCC-CC--eeEEEE
Confidence 3578899999998774 4567777665 899987654 78889999976554 33 335554
No 232
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=73.37 E-value=1.5 Score=48.09 Aligned_cols=63 Identities=16% Similarity=0.215 Sum_probs=53.7
Q ss_pred CCceEEEeCCCCCCcHH--------HHHHHHhc--cCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 005357 50 SFAKLFVGSVPKTAREE--------DIRPLFEE--HGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112 (700)
Q Consensus 50 ~~~tLfVgnLP~~vtee--------dL~elF~~--~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~ 112 (700)
..|.+|+.++..+.+.+ ++...|.. ++++..|...+|.....++|..|++|...+.+.+++..
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn~ 245 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNNG 245 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhcc
Confidence 45789999998776655 99999998 67888888888887788999999999999999988754
No 233
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=71.28 E-value=22 Score=38.54 Aligned_cols=8 Identities=38% Similarity=1.082 Sum_probs=3.0
Q ss_pred CCCCCCCC
Q 005357 269 AWHPMSPR 276 (700)
Q Consensus 269 ~~~p~~~r 276 (700)
+|.+.+++
T Consensus 422 g~~~~~~r 429 (465)
T KOG3973|consen 422 GWNPQGGR 429 (465)
T ss_pred ccCCCCCC
Confidence 34333333
No 234
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=70.37 E-value=2.7 Score=50.16 Aligned_cols=29 Identities=17% Similarity=0.454 Sum_probs=24.4
Q ss_pred CCCCceEEEeCCCCC-CcHHHHHHHHhccC
Q 005357 48 GSSFAKLFVGSVPKT-AREEDIRPLFEEHG 76 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~-vteedL~elF~~~G 76 (700)
...+|+|+|..||.+ .++++|.++|++.+
T Consensus 205 ~~ssRTvlis~LP~~~~~~e~L~~~~~kl~ 234 (827)
T COG5594 205 NLSSRTVLISGLPSELRSDEELKELFDKLK 234 (827)
T ss_pred CCCCceEEeecCChhhcCchhHHHHHhhcC
Confidence 457899999999976 56788999999875
No 235
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=69.14 E-value=9.4 Score=40.54 Aligned_cols=60 Identities=17% Similarity=0.355 Sum_probs=49.9
Q ss_pred cceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC--------CCCccceEEEEeCCHHHHHHHHH
Q 005357 142 EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE--------LKQSRGCGFVKYSHRDMALAAIN 201 (700)
Q Consensus 142 s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~--------~g~srG~aFVeF~~~e~A~~Ai~ 201 (700)
++.|.+.|+..+++--++...|.+||.||.|.++.+. ..+....+.+.|-+++.|.....
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYN 82 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYN 82 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHH
Confidence 5678899999999999999999999999999999875 23445678999999999877644
No 236
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=66.87 E-value=8.3 Score=40.59 Aligned_cols=48 Identities=10% Similarity=0.185 Sum_probs=35.2
Q ss_pred ceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHH
Q 005357 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRD 194 (700)
Q Consensus 143 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e 194 (700)
.-|+|+||+.++...||+..+.+.+-+- ..|... ..+|-||+.|-+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswk---g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTP-MSISWK---GHFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCc-eeEeee---cCCcceeEecCCcc
Confidence 3499999999999999999998875422 222222 35778999997644
No 237
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.50 E-value=20 Score=39.58 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=45.6
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCc-eeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHH
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGR-VEDVYLMRDELKQSRGCGFVKYSHRDMALAAINA 202 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~-V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~ 202 (700)
+-...|-|.+++....-+||...|+.|+. -.+|+++.| -.+|-.|++...|..|+-.
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec------ceeEEeecchHHHHHHhhc
Confidence 33467889999999999999999999975 345555544 3799999999999999875
No 238
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=64.20 E-value=2.8 Score=41.33 Aligned_cols=59 Identities=17% Similarity=0.225 Sum_probs=38.1
Q ss_pred cceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCC--CccceEEEEeCCHHHHHHHHHHhc
Q 005357 142 EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK--QSRGCGFVKYSHRDMALAAINALN 204 (700)
Q Consensus 142 s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g--~srG~aFVeF~~~e~A~~Ai~~Ln 204 (700)
.+++|.. +-+...++|..+-+ |.+..|...+...+ .-+|-.||.|.+.+.|.++++.-.
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e 171 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHE 171 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhh
Confidence 4556665 22223344544444 67777766554444 567889999999999998877543
No 239
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.27 E-value=17 Score=40.02 Aligned_cols=57 Identities=18% Similarity=0.248 Sum_probs=46.6
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCC-eeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGN-VIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~-V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~ 112 (700)
+--..|=|.++|.....+||..+|+.|+. -.+|+.+.|. .+|..|.+...|.+||..
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 34577899999999999999999999974 3455555554 799999999999999874
No 240
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.59 E-value=53 Score=37.15 Aligned_cols=9 Identities=11% Similarity=0.143 Sum_probs=5.9
Q ss_pred EEEeCCHHH
Q 005357 187 FVKYSHRDM 195 (700)
Q Consensus 187 FVeF~~~e~ 195 (700)
.++|.|-|.
T Consensus 318 e~dfSDDEk 326 (483)
T KOG2236|consen 318 EQDFSDDEK 326 (483)
T ss_pred hhccchHHH
Confidence 478877553
No 241
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=59.86 E-value=17 Score=33.33 Aligned_cols=110 Identities=20% Similarity=0.330 Sum_probs=59.1
Q ss_pred CCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhccccc-CCCccccceeecccccccc
Q 005357 59 VPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHT-LPGGVGPIQVRYADGERER 137 (700)
Q Consensus 59 LP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~-~~g~~~~l~V~~a~~~~~~ 137 (700)
||+.++ .|-++|+.-|+|.+|..+.. |.| .+|+-.+++... ++|+ +++.........
T Consensus 11 lPPYTn--KLSDYfeSPGKI~svItvtq-------------ypd----ndal~~~~G~lE~vDg~---i~IGs~q~~~sV 68 (145)
T TIGR02542 11 LPPYTN--KLSDYFESPGKIQSVITVTQ-------------YPD----NDALLYVHGTLEQVDGN---IRIGSGQTPASV 68 (145)
T ss_pred cCCccc--hhhHHhcCCCceEEEEEEec-------------cCC----chhhheeeeehhhccCc---EEEccCCCcccE
Confidence 666654 48899999999998865442 221 123323333221 2222 333332211110
Q ss_pred --cCcc--cceeeccCCCccccHHHHHHHhcC---CCceeEEEEeeCCC-CCccceEEEEeCCH
Q 005357 138 --LGAV--EYKLFVGSLNKQATEKEVEEIFSP---YGRVEDVYLMRDEL-KQSRGCGFVKYSHR 193 (700)
Q Consensus 138 --~~~~--s~~LfV~nLp~~~teedL~~~F~~---fG~V~~v~I~~d~~-g~srG~aFVeF~~~ 193 (700)
.+.. +..+| -|+.+|..||+++|++ |-.|++-.+.+|.- ..+-..||..|...
T Consensus 69 ~i~gTPsgnnv~F---~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 69 RIQGTPSGNNVIF---PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred EEecCCCCCceec---CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 0111 11222 4778999999999985 55565555555531 23444889888665
No 242
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=56.29 E-value=2.8e+02 Score=31.55 Aligned_cols=16 Identities=0% Similarity=0.239 Sum_probs=7.7
Q ss_pred EEEeCCHHHHHHHHHH
Q 005357 97 FIKYATSEEADRAIRA 112 (700)
Q Consensus 97 FVeF~~~edA~~Ai~~ 112 (700)
++.|.+.+...+.+..
T Consensus 223 ~~~~~~~~~k~~~l~~ 238 (456)
T PRK10590 223 HVHFVDKKRKRELLSQ 238 (456)
T ss_pred EEEEcCHHHHHHHHHH
Confidence 4445555544444443
No 243
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=56.12 E-value=24 Score=32.60 Aligned_cols=48 Identities=19% Similarity=0.286 Sum_probs=31.2
Q ss_pred CCCcHHHHHHHHhcc-C----CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHH
Q 005357 61 KTAREEDIRPLFEEH-G----NVIEVALIKDKKTGQQQGCCFIKYATSEEADRA 109 (700)
Q Consensus 61 ~~vteedL~elF~~~-G----~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~A 109 (700)
.+++++||+|-+.+. - .|.-..+.....+|++.|||.| |++.|.|++.
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akkf 85 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKKF 85 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHhc
Confidence 468899999877653 2 2222333334455889999988 7777776654
No 244
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=55.66 E-value=53 Score=37.45 Aligned_cols=51 Identities=6% Similarity=-0.070 Sum_probs=33.4
Q ss_pred ccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCcee
Q 005357 154 ATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYT 208 (700)
Q Consensus 154 ~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~ 208 (700)
+-|.||++-|+-+-.-..+.-|. ...|++=+.|.++++|.+.++.+..+..
T Consensus 90 iWdqELY~nf~y~q~r~ffhtFe----gddc~aGLnF~~E~EA~~F~k~V~~r~~ 140 (569)
T KOG3671|consen 90 IWDQELYQNFEYRQPRTFFHTFE----GDDCQAGLNFASEEEAQKFRKKVQDRIC 140 (569)
T ss_pred eehHHhhhhceeccCccceeeec----cccceeeecccCHHHHHHHHHHHHHHhh
Confidence 55678888886554322222221 2356777899999999999988765543
No 245
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=54.91 E-value=7.3 Score=38.60 Aligned_cols=60 Identities=22% Similarity=0.221 Sum_probs=43.0
Q ss_pred HHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCcc-ceEEEecCCC
Q 005357 157 KEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQ-PLTVRFADPK 224 (700)
Q Consensus 157 edL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr-~L~V~~a~~k 224 (700)
.+.+++|..|.+.....+++ +.++..|.|.+.+.|..|..+++...+ .++ .++.-|+.+-
T Consensus 30 ~~~~~lFrq~n~~~~fq~lr-----sfrrvRi~f~~p~~a~~a~i~~~~~~f---~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 30 ALFENLFRQINEDATFQLLR-----SFRRVRINFSNPEAAADARIKLHSTSF---NGKNELKLYFAQPG 90 (193)
T ss_pred HHHHhHHhhhCcchHHHHHH-----hhceeEEeccChhHHHHHHHHhhhccc---CCCceEEEEEccCC
Confidence 44456777666555554443 355678999999999999999999887 444 7777777664
No 246
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=54.80 E-value=20 Score=31.28 Aligned_cols=56 Identities=14% Similarity=0.183 Sum_probs=39.5
Q ss_pred eeccCCCccccHHHHHHHhcC-CC-ceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHH
Q 005357 145 LFVGSLNKQATEKEVEEIFSP-YG-RVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINA 202 (700)
Q Consensus 145 LfV~nLp~~~teedL~~~F~~-fG-~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~ 202 (700)
-|+...+.+.+..+|++.++. |+ .|.+|..+.... .+--|||.|..-++|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~--~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK--GEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC--CcEEEEEEeCCCCcHHHHHHh
Confidence 444455677888888888877 55 477777665543 334699999988888776544
No 247
>COG4874 Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown]
Probab=53.99 E-value=30 Score=35.95 Aligned_cols=123 Identities=18% Similarity=0.182 Sum_probs=61.8
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEE-eecCCCCC-----------cccEEEEEeCCHHHHHH--HHHHhc
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVAL-IKDKKTGQ-----------QQGCCFIKYATSEEADR--AIRALH 114 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i-~~d~~Tg~-----------skG~aFVeF~~~edA~~--Ai~~L~ 114 (700)
..++++|++ |+..++++-|+.+++.+|--.-+.. .+|. .|+ ..-||.|.|+...+-++ +|+.|.
T Consensus 156 h~nr~aY~~-lS~Rad~~lLe~fc~~~gy~~vvf~qT~de-~g~PiYHTNVmMaige~favic~~~i~~~~R~~vir~L~ 233 (318)
T COG4874 156 HPNRTAYAG-LSQRADRELLEVFCEQIGYSRVVFFQTRDE-SGSPIYHTNVMMAIGEHFAVICDEAIPEYERRFVIRSLA 233 (318)
T ss_pred ccchhhhhh-hhcccCHHHHHHHHHHcCCceeeeeeeccc-cCCcceehhHHHHhhhheeeeeccccccHHHHHHHHHHH
Confidence 456777876 7888888888777777773222211 1221 121 24588888876555443 455542
Q ss_pred ccccCCCccccceeecc------cccccccCcccce-eeccCCCccccHHHHHHHhcCCCceeEEEEeeCC
Q 005357 115 NQHTLPGGVGPIQVRYA------DGERERLGAVEYK-LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE 178 (700)
Q Consensus 115 g~~~~~g~~~~l~V~~a------~~~~~~~~~~s~~-LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~ 178 (700)
. +|+ ..+.++.. ...-+.......+ |-.+.-.+.+-.++-+++.+++|.|.-+.+..-+
T Consensus 234 ~----dgk-eiv~is~~Q~~hF~GN~ieL~~~~n~~v~aMSa~Ay~~lTd~Q~niie~~~~ivp~~VpTIE 299 (318)
T COG4874 234 K----DGK-EIVSISIEQMNHFCGNIIELETADNQKVIAMSASAYEALTDTQLNIIETHGKIVPFAVPTIE 299 (318)
T ss_pred h----CCC-eEEEeeHHHHHHhhccceEeeccCCceEEEeehhHHHHhhHHHHHHHHhhCeeeeeccccee
Confidence 2 111 11222111 1111111111222 2223333344445667788888888877766554
No 248
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=51.88 E-value=25 Score=30.17 Aligned_cols=57 Identities=14% Similarity=0.194 Sum_probs=39.8
Q ss_pred eeeccCCCccccHHHHHHHhcC-CC-ceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHH
Q 005357 144 KLFVGSLNKQATEKEVEEIFSP-YG-RVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINA 202 (700)
Q Consensus 144 ~LfV~nLp~~~teedL~~~F~~-fG-~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~ 202 (700)
+-|+..++.+.+..+|++.++. |+ .|..|..+.... .+--|||.+..-++|...-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~--~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR--GEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC--CceEEEEEECCCCcHHHHHHh
Confidence 3455566778899999988877 55 477776655443 344699999888777766543
No 249
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=50.72 E-value=12 Score=34.69 Aligned_cols=37 Identities=11% Similarity=0.300 Sum_probs=22.4
Q ss_pred ccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCC
Q 005357 154 ATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSH 192 (700)
Q Consensus 154 ~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~ 192 (700)
.+.++|++.|+.|..++ |+.+.++. ...|+++|+|..
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~-gh~g~aiv~F~~ 65 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQ-GHTGFAIVEFNK 65 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETT-EEEEEEEEE--S
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCC-CCcEEEEEEECC
Confidence 35578999999998765 55555544 468899999966
No 250
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=49.95 E-value=19 Score=33.34 Aligned_cols=56 Identities=14% Similarity=0.255 Sum_probs=30.8
Q ss_pred eEEEeCCCCC---------CcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCC-HHHHHHHHH
Q 005357 53 KLFVGSVPKT---------AREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYAT-SEEADRAIR 111 (700)
Q Consensus 53 tLfVgnLP~~---------vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~-~edA~~Ai~ 111 (700)
+++|-|++.+ ++.++|++.|+.|..++ ++.+.++. ..+|++.|+|.+ -..-.+|++
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHHH
Confidence 4566666533 35578999999998864 66666653 578999999975 344445554
No 251
>PF12905 Glyco_hydro_101: Endo-alpha-N-acetylgalactosaminidase; PDB: 3ECQ_B 2ZXQ_A.
Probab=48.72 E-value=4.9 Score=44.67 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=17.8
Q ss_pred CCCCcccccCCcCcccccCChhhhH
Q 005357 567 PDGYKYYYNCVTGVSKWEKPEELTL 591 (700)
Q Consensus 567 ~~g~~yyyn~~t~~s~w~kp~~~~~ 591 (700)
.+.|.|+||..-++|||+-|+.++.
T Consensus 381 ~~eKLYHyN~~GGtSTW~LP~~w~~ 405 (425)
T PF12905_consen 381 DEEKLYHYNPDGGTSTWTLPDSWAG 405 (425)
T ss_dssp GG-EEEEEESS-CEEEEE--HHHCT
T ss_pred CcceeEEEcCCCCeeeeeCCccccC
Confidence 3469999999999999999998764
No 252
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=48.53 E-value=27 Score=28.65 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=18.4
Q ss_pred HHHHHHHhcCCCceeEEEEeeCC
Q 005357 156 EKEVEEIFSPYGRVEDVYLMRDE 178 (700)
Q Consensus 156 eedL~~~F~~fG~V~~v~I~~d~ 178 (700)
.++||++|+..|.|.-+.|-..+
T Consensus 8 ~~~iR~~fs~lG~I~vLYvn~~e 30 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYVNPYE 30 (62)
T ss_pred HHHHHHHHHhcCcEEEEEEcccc
Confidence 46899999999998887765443
No 253
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=48.41 E-value=45 Score=38.88 Aligned_cols=83 Identities=23% Similarity=0.394 Sum_probs=55.9
Q ss_pred EEEEEeCCHHHHHHHHHHhcccccCCCccccc-----------eeeccccccc-----ccCcccceeeccCCCccccHHH
Q 005357 95 CCFIKYATSEEADRAIRALHNQHTLPGGVGPI-----------QVRYADGERE-----RLGAVEYKLFVGSLNKQATEKE 158 (700)
Q Consensus 95 ~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l-----------~V~~a~~~~~-----~~~~~s~~LfV~nLp~~~teed 158 (700)
-|||.+.+++..+-..+.|+...++.|...-+ -++|++.++. ..+.....||+.+|+-+.-++-
T Consensus 238 ~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~dV 317 (621)
T COG0445 238 PCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPEDV 317 (621)
T ss_pred ceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcccccCCHHH
Confidence 69999999998887777777666655432211 1333333222 1244567899999988887777
Q ss_pred HHHHhcCCCceeEEEEeeC
Q 005357 159 VEEIFSPYGRVEDVYLMRD 177 (700)
Q Consensus 159 L~~~F~~fG~V~~v~I~~d 177 (700)
=.++....-.+++++|++.
T Consensus 318 Q~~~irsipGlEna~i~rp 336 (621)
T COG0445 318 QEQIIRSIPGLENAEILRP 336 (621)
T ss_pred HHHHHHhCcccccceeecc
Confidence 7777777777888888764
No 254
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=48.38 E-value=21 Score=35.35 Aligned_cols=62 Identities=13% Similarity=0.139 Sum_probs=43.5
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCC-CCcccEEEEEeCCHHHHHHHHHHh
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKT-GQQQGCCFIKYATSEEADRAIRAL 113 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~T-g~skG~aFVeF~~~edA~~Ai~~L 113 (700)
....+++|.. +-+..-++|..+-+ |.+..|.+.+..+. ...+|-.||.|.+.+.|+.+++.-
T Consensus 108 ~~~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~ 170 (205)
T KOG4213|consen 108 GIKERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTH 170 (205)
T ss_pred HHHHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhh
Confidence 3456778877 33444455555555 78888877664331 267899999999999999988753
No 255
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=48.12 E-value=7.1 Score=44.62 Aligned_cols=67 Identities=21% Similarity=0.136 Sum_probs=50.7
Q ss_pred cceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCcee
Q 005357 142 EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYT 208 (700)
Q Consensus 142 s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~ 208 (700)
+|.|||.|+..+++.++|..+|+.+-.+..+.+..+. ......+.+|.|+.--....|+.+||+..+
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl 298 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRL 298 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccc
Confidence 4779999999999999999999998777666554432 233445788999877777777777776554
No 256
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=47.08 E-value=23 Score=38.99 Aligned_cols=75 Identities=15% Similarity=0.167 Sum_probs=54.5
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccC-CeeEEEEeec-CCC-CCcccEEEEEeCCHHHHHHHHHHhcccccCCCcc
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHG-NVIEVALIKD-KKT-GQQQGCCFIKYATSEEADRAIRALHNQHTLPGGV 123 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G-~V~~i~i~~d-~~T-g~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~ 123 (700)
...+.|.|.+||...++++|.+-+..|- +|....+... ... ..-.+.+||.|.+.++.....+.+++..+++.+.
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~Kg 82 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDNKG 82 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecCCC
Confidence 4567899999999999999988887764 2333333321 111 1225789999999999999999998888877665
No 257
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=47.03 E-value=56 Score=28.50 Aligned_cols=57 Identities=23% Similarity=0.257 Sum_probs=42.2
Q ss_pred EEEeCCCCCCcHHHHHHHHhc-cC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 005357 54 LFVGSVPKTAREEDIRPLFEE-HG-NVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113 (700)
Q Consensus 54 LfVgnLP~~vteedL~elF~~-~G-~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L 113 (700)
-|+=.++.++++.+|++.++. || .|.+|+.+.-+. ..--|||.|...++|.+....+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHhh
Confidence 444456789999999999987 55 677887776542 2236999999998888876554
No 258
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=43.49 E-value=1.4e+02 Score=28.34 Aligned_cols=115 Identities=17% Similarity=0.161 Sum_probs=49.7
Q ss_pred eEEEeCCC----CCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccccee
Q 005357 53 KLFVGSVP----KTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQV 128 (700)
Q Consensus 53 tLfVgnLP----~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V 128 (700)
.+|+++|. ..+...||+++|+..| ..+|+-.... | ...|-.=.+.++.+..|+..-...+ |....+.+
T Consensus 5 iaLLRGINVGG~nki~MaeLr~~l~~~G-f~~V~Tyi~S--G---Nvvf~~~~~~~~l~~~ie~~l~~~f--G~~v~v~v 76 (137)
T PF08002_consen 5 IALLRGINVGGKNKIKMAELREALEDLG-FTNVRTYIQS--G---NVVFESDRDPAELAAKIEKALEERF--GFDVPVIV 76 (137)
T ss_dssp EEEESS-SBTTBS---HHHHHHHHHHCT--EEEEEETTT--T---EEEEEESS-HHHHHHHHHHHHHHH---TT---EEE
T ss_pred EEEEcceecCCCCcccHHHHHHHHHHcC-CCCceEEEee--C---CEEEecCCChHHHHHHHHHHHHHhc--CCCeEEEE
Confidence 46677774 3478999999999998 4555543331 1 1333333455555555554322122 22233333
Q ss_pred eccccc---------ccccCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEe
Q 005357 129 RYADGE---------RERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLM 175 (700)
Q Consensus 129 ~~a~~~---------~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~ 175 (700)
+..+.- .........+++|.=|....+.+++.++-..-+..+.+.+.
T Consensus 77 rs~~el~~i~~~nPf~~~~~~~~~~~~v~fl~~~~~~~~~~~l~~~~~~~E~~~~~ 132 (137)
T PF08002_consen 77 RSAEELRAIIAANPFPWEAEADPKRLYVTFLSGPPDAEALEELAAYDTGPERFRVG 132 (137)
T ss_dssp EEHHHHHHHHTT--GGGGS----SEEEEEEE-TT--HHHHHHHHTS---SEEEEE-
T ss_pred eeHHHHHHHHHHCCCcccccCCcceEEEEEeCCCCCHHHHHHHhccCCCCcEEEEe
Confidence 333211 00111234566666666666777666666555445555543
No 259
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=42.20 E-value=50 Score=29.72 Aligned_cols=48 Identities=23% Similarity=0.389 Sum_probs=29.5
Q ss_pred CCCcHHHHHHHHh-ccCCeeEEEEeecCCC----CCcccEEEEEeCCHHHHHHH
Q 005357 61 KTAREEDIRPLFE-EHGNVIEVALIKDKKT----GQQQGCCFIKYATSEEADRA 109 (700)
Q Consensus 61 ~~vteedL~elF~-~~G~V~~i~i~~d~~T----g~skG~aFVeF~~~edA~~A 109 (700)
.+.+..||++.+. .|+.-.+..++..-.| +++.|||.| |+|.+.|++.
T Consensus 29 ~tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 29 ATPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred CCCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhh
Confidence 4677888887664 4553334444443333 577788877 7777766644
No 260
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=42.08 E-value=97 Score=24.41 Aligned_cols=54 Identities=20% Similarity=0.218 Sum_probs=41.3
Q ss_pred eeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCH----HHHHHHHHH
Q 005357 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHR----DMALAAINA 202 (700)
Q Consensus 144 ~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~----e~A~~Ai~~ 202 (700)
++.|.|+.-.-....|++.+.+.-.|.++.+-.. .+.+-|+|+.. ++..++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~-----~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE-----TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT-----TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC-----CCEEEEEEecCCCCHHHHHHHHHH
Confidence 4678888888889999999999988999988655 35678888643 555555554
No 261
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=41.87 E-value=56 Score=36.13 Aligned_cols=51 Identities=16% Similarity=0.283 Sum_probs=36.2
Q ss_pred CCceEEEeCCCC----CCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHH
Q 005357 50 SFAKLFVGSVPK----TAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111 (700)
Q Consensus 50 ~~~tLfVgnLP~----~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~ 111 (700)
..+-|||.|=.. -++.+||+++.+.... .+.|+.| -||++|.. +++...+.
T Consensus 145 ~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~--~~~vVvD--------EAY~eF~~-~~~~~l~~ 199 (356)
T COG0079 145 KTKLVFLCNPNNPTGTLLPREELRALLEALPE--GGLVVID--------EAYIEFSP-ESSLELLK 199 (356)
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC--CcEEEEe--------CchhhcCC-chhhhhcc
Confidence 456799987542 3789999999998766 4555666 48999999 44444433
No 262
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=41.63 E-value=80 Score=27.06 Aligned_cols=58 Identities=19% Similarity=0.225 Sum_probs=41.8
Q ss_pred eEEEeCCCCCCcHHHHHHHHhc-cC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 005357 53 KLFVGSVPKTAREEDIRPLFEE-HG-NVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113 (700)
Q Consensus 53 tLfVgnLP~~vteedL~elF~~-~G-~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L 113 (700)
+-|+=.++.+++..+|++.++. |+ .|.+|+.+.-+. ..--|||.+...++|.+.-..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHhh
Confidence 3555557889999999999987 55 677777766542 2236999999888887765544
No 263
>PRK11901 hypothetical protein; Reviewed
Probab=41.39 E-value=81 Score=34.31 Aligned_cols=61 Identities=25% Similarity=0.397 Sum_probs=40.3
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEE--EeCCHHHHHHHHHHhc
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFI--KYATSEEADRAIRALH 114 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFV--eF~~~edA~~Ai~~L~ 114 (700)
....+|=|..+ .++++|++|.++++ +..+++.+..+.|+.- |..| .|.+.++|++||+.|-
T Consensus 243 ~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLP 305 (327)
T PRK11901 243 ASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLP 305 (327)
T ss_pred CCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCC
Confidence 34555655553 45788888888886 4556666654444332 3222 6899999999999874
No 264
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=40.54 E-value=29 Score=28.93 Aligned_cols=45 Identities=13% Similarity=0.310 Sum_probs=35.8
Q ss_pred HHHHHHHhccC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 005357 66 EDIRPLFEEHG-NVIEVALIKDKKTGQQQGCCFIKYATSEEADRAI 110 (700)
Q Consensus 66 edL~elF~~~G-~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai 110 (700)
++|++.|...| +|++|.-+.++.++..--.-||+++...+.++++
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~ 47 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY 47 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee
Confidence 67888999998 6888888888777777789999998877655544
No 265
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=40.36 E-value=98 Score=33.81 Aligned_cols=41 Identities=27% Similarity=0.279 Sum_probs=29.1
Q ss_pred CCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCC
Q 005357 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG 90 (700)
Q Consensus 50 ~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg 90 (700)
..+++|+|.+-.|---+.|++..++-|--....+.+|-.||
T Consensus 80 p~~~~f~GsvG~Dk~ge~l~~~~~~aGv~~~yq~~~d~~TG 120 (343)
T KOG2854|consen 80 PGATVFFGSVGKDKFGELLKSKARAAGVNVHYQVKEDGPTG 120 (343)
T ss_pred CCceEEEeeccCchHHHHHHHHHHhcCceEEEEeccCCCCc
Confidence 45899999998888888888888888744444444444443
No 266
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=38.89 E-value=3.1e+02 Score=26.90 Aligned_cols=50 Identities=12% Similarity=0.254 Sum_probs=34.1
Q ss_pred cHHHHHHHHhccC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 005357 64 REEDIRPLFEEHG-NVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALH 114 (700)
Q Consensus 64 teedL~elF~~~G-~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~ 114 (700)
.-.+|..+|.+.| .|.++.+......+.++ +.|+.-.|.+..+..++.|+
T Consensus 15 vL~rI~~lf~rrg~NI~Sl~v~~te~~~~sr-iti~V~~~~~~i~qi~kQl~ 65 (161)
T PRK11895 15 VLSRVAGLFSRRGYNIESLTVGPTEDPGLSR-MTIVTSGDEQVIEQITKQLN 65 (161)
T ss_pred HHHHHHHHHHhCCCcEEEEEeeecCCCCEEE-EEEEEECCHHHHHHHHHHHh
Confidence 4567888999888 67787766543223333 55555567888888888874
No 267
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=38.87 E-value=5.6 Score=45.45 Aligned_cols=67 Identities=13% Similarity=0.146 Sum_probs=49.1
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHN 115 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g 115 (700)
...|+|||.|+.++++-++|..+++.+--+..+.+..+-.-.+...+..|.|+-.-+.+.|+.+|++
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~ 295 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNG 295 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhh
Confidence 4578899999999999999999999987666666554433345566889999755555555555543
No 268
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=37.99 E-value=3.4e+02 Score=25.37 Aligned_cols=120 Identities=14% Similarity=0.248 Sum_probs=65.6
Q ss_pred eEEEeCCCCCCcHHHHHHHHhccC-CeeEEEEeecCCCCCcccEEEEEe--CCHHHHHHHHHHhcccccCCCccccceee
Q 005357 53 KLFVGSVPKTAREEDIRPLFEEHG-NVIEVALIKDKKTGQQQGCCFIKY--ATSEEADRAIRALHNQHTLPGGVGPIQVR 129 (700)
Q Consensus 53 tLfVgnLP~~vteedL~elF~~~G-~V~~i~i~~d~~Tg~skG~aFVeF--~~~edA~~Ai~~L~g~~~~~g~~~~l~V~ 129 (700)
.||+-|-+-. -....+.+.+.| .|+.+.|... + -|+.+.+ .+.++|..++++- +-..... -.+-|+
T Consensus 7 SvFlENk~GR--L~~~~~~L~eagINiRA~tiAdt---~---dFGIiRmvV~~~d~A~~~Lee~-gF~Vr~~--dVlaVE 75 (142)
T COG4747 7 SVFLENKPGR--LASVANKLKEAGINIRAFTIADT---G---DFGIIRMVVDRPDEAHSVLEEA-GFTVRET--DVLAVE 75 (142)
T ss_pred EEEecCCcch--HHHHHHHHHHcCCceEEEEeccc---c---CcceEEEEcCChHHHHHHHHHC-CcEEEee--eEEEEE
Confidence 4777665422 122344555666 4444444332 2 2777765 6788899998863 2111100 111122
Q ss_pred cccccccccCcccceeeccCCCccccHHHHHHHhcCCC-ceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhc
Q 005357 130 YADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYG-RVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALN 204 (700)
Q Consensus 130 ~a~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG-~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Ln 204 (700)
.. ..| -.-..|.+.|..++ .+.++.-+..++ .|..-||+-+|.+.+.+|++...
T Consensus 76 me-----------------D~P--G~l~~I~~vl~d~diNldYiYAFv~ek--~KAlli~r~ed~d~~~~aLed~g 130 (142)
T COG4747 76 ME-----------------DVP--GGLSRIAEVLGDADINLDYIYAFVTEK--QKALLIVRVEDIDRAIKALEDAG 130 (142)
T ss_pred ec-----------------CCC--CcHHHHHHHHhhcCcCceeeeeeeecC--ceEEEEEEhhHHHHHHHHHHHcC
Confidence 11 111 22345677777776 366666554433 46667788888888888888644
No 269
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=37.81 E-value=3.6e+02 Score=26.30 Aligned_cols=51 Identities=10% Similarity=0.198 Sum_probs=32.5
Q ss_pred CcHHHHHHHHhccC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 005357 63 AREEDIRPLFEEHG-NVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALH 114 (700)
Q Consensus 63 vteedL~elF~~~G-~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~ 114 (700)
-.-.+|..+|.+.| .|.++.+......+.++ +.|+.-.+.+..+..++.|+
T Consensus 13 GvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sr-iti~V~~d~~~i~qi~kQl~ 64 (157)
T TIGR00119 13 GVLSRVAGLFTRRGFNIESLTVGPTEDPDLSR-MTIVVVGDDKVLEQITKQLN 64 (157)
T ss_pred cHHHHHHHHHHhCCceEEEEEEeecCCCCEEE-EEEEEECCHHHHHHHHHHHh
Confidence 34567888999887 67788766553233333 55555456666777777664
No 270
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=37.76 E-value=1.7e+02 Score=25.42 Aligned_cols=48 Identities=17% Similarity=0.290 Sum_probs=28.2
Q ss_pred CCCcHHHHHHHHhc-cC----CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHH
Q 005357 61 KTAREEDIRPLFEE-HG----NVIEVALIKDKKTGQQQGCCFIKYATSEEADRA 109 (700)
Q Consensus 61 ~~vteedL~elF~~-~G----~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~A 109 (700)
.+.+.+||++.+.. |+ .|.-..+......+++.|||.| |+|.+.+++.
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk~ 63 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKKF 63 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHHh
Confidence 56677888887754 33 2333334444444677888887 7777766543
No 271
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=37.03 E-value=2.9e+02 Score=27.97 Aligned_cols=48 Identities=27% Similarity=0.297 Sum_probs=32.2
Q ss_pred cHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc
Q 005357 64 REEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHN 115 (700)
Q Consensus 64 teedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g 115 (700)
+.++.+++++.++.-. +.|..| |...|-+-+...|.++|.+|++.+-.
T Consensus 25 ~~~~A~~~l~~~~~p~-~ViKad---Gla~GKGV~i~~~~~eA~~~l~~~~~ 72 (194)
T PF01071_consen 25 DYEEALEYLEEQGYPY-VVIKAD---GLAAGKGVVIADDREEALEALREIFV 72 (194)
T ss_dssp SHHHHHHHHHHHSSSE-EEEEES---SSCTTTSEEEESSHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCCc-eEEccC---CCCCCCEEEEeCCHHHHHHHHHHhcc
Confidence 5677788888776423 344444 44444445566999999999988744
No 272
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=36.50 E-value=1.9e+02 Score=22.62 Aligned_cols=55 Identities=13% Similarity=0.113 Sum_probs=41.5
Q ss_pred eEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCH----HHHHHHHHHh
Q 005357 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATS----EEADRAIRAL 113 (700)
Q Consensus 53 tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~----edA~~Ai~~L 113 (700)
+|.|.||.-..-...|++.+...-.|.++.+-... +-+-|.|... ++..++|+.+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~~~ 59 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIEKA 59 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHHHT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHHHh
Confidence 57888888888888999999999888888875543 3778888643 5666666653
No 273
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=34.74 E-value=1.8e+02 Score=23.28 Aligned_cols=45 Identities=22% Similarity=0.171 Sum_probs=30.0
Q ss_pred cHHHHHHHhcCCC-ceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHH
Q 005357 155 TEKEVEEIFSPYG-RVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINA 202 (700)
Q Consensus 155 teedL~~~F~~fG-~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~ 202 (700)
.-.+|-++|.+.| .|+++.+..... +++..+.+++.+.|.+++++
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~---~~~~rl~~~~~~~~~~~L~~ 59 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE---FGILRLIVSDPDKAKEALKE 59 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC---CCEEEEEECCHHHHHHHHHH
Confidence 4467888888876 588887655422 45666677777677766653
No 274
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=34.07 E-value=45 Score=36.84 Aligned_cols=72 Identities=13% Similarity=0.243 Sum_probs=53.0
Q ss_pred cceeeccCCCccccHHHHHHHhcCCCc-eeEEEEeeCCC---CCccceEEEEeCCHHHHHHHHHHhcCceeccCCc
Q 005357 142 EYKLFVGSLNKQATEKEVEEIFSPYGR-VEDVYLMRDEL---KQSRGCGFVKYSHRDMALAAINALNGIYTMRGCD 213 (700)
Q Consensus 142 s~~LfV~nLp~~~teedL~~~F~~fG~-V~~v~I~~d~~---g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~g 213 (700)
-+.+.|.+|+...++++|.+-...|-. |....+..... ..-.+.++|.|...++.....+.++|++++...+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~Kg 82 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDNKG 82 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecCCC
Confidence 357889999999999998887777643 44444442221 2235678999999999999999999998876544
No 275
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=33.78 E-value=96 Score=25.78 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=37.8
Q ss_pred ceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCC
Q 005357 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSH 192 (700)
Q Consensus 143 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~ 192 (700)
..|+|.++.=.-....+++.++....|..+.+..+ ++.++|+|++
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~-----~~~~~V~~d~ 48 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLE-----KGTATVTFDS 48 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcc-----cCeEEEEEcC
Confidence 46788888888888999999999888999988776 4569999988
No 276
>PRK07400 30S ribosomal protein S1; Reviewed
Probab=33.67 E-value=1.2e+02 Score=32.92 Aligned_cols=36 Identities=14% Similarity=0.289 Sum_probs=23.1
Q ss_pred CCcHHHHHHHHhcc------CCeeEEEEeecCCCCCcccEEEEEeCC
Q 005357 62 TAREEDIRPLFEEH------GNVIEVALIKDKKTGQQQGCCFIKYAT 102 (700)
Q Consensus 62 ~vteedL~elF~~~------G~V~~i~i~~d~~Tg~skG~aFVeF~~ 102 (700)
..+++++.++|+.| |.|+..+|+.-. ...+||.+..
T Consensus 12 ~~~~~~f~~~le~~~~~~~~G~iv~G~V~~i~-----~~g~~Vdig~ 53 (318)
T PRK07400 12 GFTHEDFAALLDKYDYHFKPGDIVNGTVFSLE-----PRGALIDIGA 53 (318)
T ss_pred CCCHHHHHHHHHhhHhhcCCCCEEEEEEEEEE-----CCEEEEEECC
Confidence 45667788777654 777777766532 2367777754
No 277
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=33.48 E-value=4.7e+02 Score=25.59 Aligned_cols=123 Identities=19% Similarity=0.232 Sum_probs=63.6
Q ss_pred HhccC-CeeEEEEeecCCCC-CcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceeecccccccccCcccceeeccC
Q 005357 72 FEEHG-NVIEVALIKDKKTG-QQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGS 149 (700)
Q Consensus 72 F~~~G-~V~~i~i~~d~~Tg-~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~~a~~~~~~~~~~s~~LfV~n 149 (700)
+++|| +|..|..-+++++| +-.----++.++++.+.+.++.+. .. +.+.+++. ..+ .......|.|+.
T Consensus 26 ls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~~~~~~~i~~~~e--~~---Gi~I~~~d---g~~--~~~~~~vvLIGh 95 (170)
T COG2061 26 LSKTGANIITIIHSRDKKYGPRVPVQIVFEGDREDKDAKIIRLLE--EE---GIIIIRFD---GAR--LREKTDVVLIGH 95 (170)
T ss_pred hhhcCccEEEEEeecCcccCCceeEEEEEEecccHHHHHHHHHHH--hC---CcEEEEec---CcC--cceeEeEEEEEe
Confidence 45565 78888888887753 222223334455666666666551 11 22222222 111 122345677776
Q ss_pred CCccccHHHHHHHhcCCC--ceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcC
Q 005357 150 LNKQATEKEVEEIFSPYG--RVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNG 205 (700)
Q Consensus 150 Lp~~~teedL~~~F~~fG--~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng 205 (700)
+-+. +-.|--+.....| .|.++.+.... .+.+...--+...+.++-++|+..++.
T Consensus 96 iv~t-diqDTId~In~ig~A~vvDl~L~Mp~~e~~SsA~iti~a~~~e~l~ea~~~l~e 153 (170)
T COG2061 96 IVHT-DIQDTIDRINSIGGAEVVDLSLSMPGIEGESSARITIIAVGKEKLDEALRRLKE 153 (170)
T ss_pred eecC-cHHHHHHHhhccCCEEEEEEEeecCCCCCCcceeEEEEEcChhHHHHHHHHHHH
Confidence 6543 3333333334444 57777665443 454443334555678888888876653
No 278
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=33.40 E-value=73 Score=30.20 Aligned_cols=48 Identities=17% Similarity=0.222 Sum_probs=28.7
Q ss_pred CCCcHHHHHHHHhc-cC-CeeEEEEeecCC----CCCcccEEEEEeCCHHHHHHH
Q 005357 61 KTAREEDIRPLFEE-HG-NVIEVALIKDKK----TGQQQGCCFIKYATSEEADRA 109 (700)
Q Consensus 61 ~~vteedL~elF~~-~G-~V~~i~i~~d~~----Tg~skG~aFVeF~~~edA~~A 109 (700)
.+.+.+||++.+.. |+ .-.++.++..-. .|++.|||.| |+|.|++.+.
T Consensus 34 ~TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk~ 87 (132)
T PTZ00071 34 GTVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKKF 87 (132)
T ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 36788888887754 44 223333333322 3677888887 6777666543
No 279
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=33.30 E-value=41 Score=35.40 Aligned_cols=37 Identities=19% Similarity=0.380 Sum_probs=28.5
Q ss_pred CCCceEEEeCCCCC------------CcHHHHHHHHhccCCeeEEEEee
Q 005357 49 SSFAKLFVGSVPKT------------AREEDIRPLFEEHGNVIEVALIK 85 (700)
Q Consensus 49 ~~~~tLfVgnLP~~------------vteedL~elF~~~G~V~~i~i~~ 85 (700)
.-..|||+.+||.. -+|+.|+..|+.||+|..|.|..
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 34567888888742 36788999999999999887753
No 280
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=33.22 E-value=1.3e+02 Score=25.05 Aligned_cols=44 Identities=18% Similarity=0.337 Sum_probs=31.5
Q ss_pred HHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 005357 66 EDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALH 114 (700)
Q Consensus 66 edL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~ 114 (700)
++|+++++++| +...++.-. -.-++.|+.+++.++++++++.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGs----G~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGS----GGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETT----SSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCC----CCCCeEEEEECCHHHHHHHHHHHH
Confidence 46777788888 555555332 113588888889999999988874
No 281
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=32.75 E-value=21 Score=24.39 Aligned_cols=21 Identities=33% Similarity=0.484 Sum_probs=18.5
Q ss_pred eCCCCCcccccCCcCcccccC
Q 005357 565 TSPDGYKYYYNCVTGVSKWEK 585 (700)
Q Consensus 565 ~~~~g~~yyyn~~t~~s~w~k 585 (700)
-+.||+.|-+|..|++..|+.
T Consensus 12 ~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 12 GSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EcCCCEEEEEEcccCcEEEEc
Confidence 356899999999999999985
No 282
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=31.38 E-value=2.6e+02 Score=33.70 Aligned_cols=147 Identities=14% Similarity=0.149 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCC-CCCcHHHHHHHHhc-----
Q 005357 1 MGGGFRPMSGPRSGMNYPLPQSLPVPQLSGQKRGFSGRGGPSPDLVDGSSFAKLFVGSVP-KTAREEDIRPLFEE----- 74 (700)
Q Consensus 1 ~GGG~gg~gg~g~G~~~~~P~~~p~pp~~g~~~~~s~~~~~~~~~~~~~~~~tLfVgnLP-~~vteedL~elF~~----- 74 (700)
+|-||+-.||+..+-.+.- +.-.-.++...+.+-.....-|+|-++| ...+-.++.+|++.
T Consensus 660 sGFGFRiLGG~ep~qpi~i-------------G~Iv~lGaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~AArng 726 (984)
T KOG3209|consen 660 SGFGFRILGGDEPGQPIYI-------------GAIVPLGAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAAARNG 726 (984)
T ss_pred cccceEEecCCCCCCeeEE-------------eeeeecccccccCcccCCCeEEEecCeeccCccHHHHHHHHHHHHhcC
Q ss_pred ----------------------cCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceeeccc
Q 005357 75 ----------------------HGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYAD 132 (700)
Q Consensus 75 ----------------------~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~~a~ 132 (700)
++++...+|+..+ +++.||+||.+.+ -.+.-.+-.+.+.-+.++
T Consensus 727 hV~LtVRRkv~~~~~~rsp~~s~~~~~~yDV~lhR--~ENeGFGFVi~sS------------~~kp~sgiGrIieGSPAd 792 (984)
T KOG3209|consen 727 HVNLTVRRKVRTGPARRSPRNSAAPSGPYDVVLHR--KENEGFGFVIMSS------------QNKPESGIGRIIEGSPAD 792 (984)
T ss_pred ceEEEEeeeeeeccccCCcccccCCCCCeeeEEec--ccCCceeEEEEec------------ccCCCCCccccccCChhH
Q ss_pred ccccccCcccceeeccCCCcc-ccHHHHHHHhcCCCceeEEEEe
Q 005357 133 GERERLGAVEYKLFVGSLNKQ-ATEKEVEEIFSPYGRVEDVYLM 175 (700)
Q Consensus 133 ~~~~~~~~~s~~LfV~nLp~~-~teedL~~~F~~fG~V~~v~I~ 175 (700)
..... +.-.+.|-|.+.+-- .+..||..+.+.-|--+.++|+
T Consensus 793 RCgkL-kVGDrilAVNG~sI~~lsHadiv~LIKdaGlsVtLtIi 835 (984)
T KOG3209|consen 793 RCGKL-KVGDRILAVNGQSILNLSHADIVSLIKDAGLSVTLTII 835 (984)
T ss_pred hhccc-cccceEEEecCeeeeccCchhHHHHHHhcCceEEEEEc
No 283
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=30.85 E-value=44 Score=33.28 Aligned_cols=74 Identities=14% Similarity=0.160 Sum_probs=47.6
Q ss_pred CceEEEeCCCCCCc-----HHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccc
Q 005357 51 FAKLFVGSVPKTAR-----EEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGP 125 (700)
Q Consensus 51 ~~tLfVgnLP~~vt-----eedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~ 125 (700)
..++++.+|..++- ..+..++|..|.+..-..+++.. ++.-|.|.+.+.|.+|...++...+..+. .
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf------rrvRi~f~~p~~a~~a~i~~~~~~f~~~~--~ 81 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF------RRVRINFSNPEAAADARIKLHSTSFNGKN--E 81 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh------ceeEEeccChhHHHHHHHHhhhcccCCCc--e
Confidence 45678888875532 23445667777666555555433 47788999999999999988776654332 3
Q ss_pred ceeeccc
Q 005357 126 IQVRYAD 132 (700)
Q Consensus 126 l~V~~a~ 132 (700)
++.-++.
T Consensus 82 ~k~yfaQ 88 (193)
T KOG4019|consen 82 LKLYFAQ 88 (193)
T ss_pred EEEEEcc
Confidence 4444443
No 284
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=30.50 E-value=37 Score=35.08 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=30.2
Q ss_pred CCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEE
Q 005357 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEV 81 (700)
Q Consensus 46 ~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i 81 (700)
......++||+-|||..+|++.|.++.+.+|.+..+
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 345667899999999999999999999999965443
No 285
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=30.40 E-value=6.7e+02 Score=28.50 Aligned_cols=136 Identities=17% Similarity=0.216 Sum_probs=0.0
Q ss_pred CcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceeeccccccccc----
Q 005357 63 AREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERL---- 138 (700)
Q Consensus 63 vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~~a~~~~~~~---- 138 (700)
.+.++.++++.++|.- |.|..| |..-|-+-+.-.+.++|++|++++-....+.....++-|+.--.-.+..
T Consensus 125 ~~~e~a~ayi~~~g~p--iVVKad---GLaaGKGV~V~~~~eeA~~a~~~~l~~~~fg~~g~~VVIEEfL~GeE~S~~a~ 199 (428)
T COG0151 125 TDPEEAKAYIDEKGAP--IVVKAD---GLAAGKGVIVAMTLEEAEAAVDEMLEGNAFGSAGARVVIEEFLDGEEFSLQAF 199 (428)
T ss_pred CCHHHHHHHHHHcCCC--EEEecc---cccCCCCeEEcCCHHHHHHHHHHHHhhccccCCCCcEEEEecccceEEEEEEE
Q ss_pred -----------CcccceeeccCCCccc------------cHHHHHHHh---------------cCCCceeEEEEeeCCCC
Q 005357 139 -----------GAVEYKLFVGSLNKQA------------TEKEVEEIF---------------SPYGRVEDVYLMRDELK 180 (700)
Q Consensus 139 -----------~~~s~~LfV~nLp~~~------------teedL~~~F---------------~~fG~V~~v~I~~d~~g 180 (700)
..+-+++|=++.-.++ |++++++.. ..|-.|.+.-++....|
T Consensus 200 ~DG~~v~p~p~aQDhKra~dgD~GPNTGGMGaysp~P~~t~e~~~~~~~~Iv~ptv~gm~~EG~~f~GvLy~glMlt~~G 279 (428)
T COG0151 200 VDGKTVIPMPTAQDHKRAYDGDTGPNTGGMGAYSPAPFITDEVVERAVEEIVEPTVEGMAKEGYPFRGVLYAGLMLTADG 279 (428)
T ss_pred EcCCeEEECccccccccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEeEEEEcCCC
Q ss_pred CccceEE-EEeCCHHHHHHHHHHhcC
Q 005357 181 QSRGCGF-VKYSHRDMALAAINALNG 205 (700)
Q Consensus 181 ~srG~aF-VeF~~~e~A~~Ai~~Lng 205 (700)
.+-.-| ++|-|.| ++..+-.|..
T Consensus 280 -PkViEfN~RFGDPE-tq~vL~~l~s 303 (428)
T COG0151 280 -PKVIEFNARFGDPE-TQVVLPLLES 303 (428)
T ss_pred -cEEEEEecccCChh-HHHHHHhccc
No 286
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=29.68 E-value=5.6e+02 Score=25.83 Aligned_cols=22 Identities=5% Similarity=0.104 Sum_probs=18.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHhc
Q 005357 93 QGCCFIKYATSEEADRAIRALH 114 (700)
Q Consensus 93 kG~aFVeF~~~edA~~Ai~~L~ 114 (700)
..++||.+++.+.+..+.+.|.
T Consensus 96 ~~~~~V~~d~~~~g~~~~~~l~ 117 (272)
T cd06301 96 KGVAYVGSDEVVAGRLQAEYVA 117 (272)
T ss_pred CeeEEEecChHHHHHHHHHHHH
Confidence 4589999999998888887764
No 287
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=29.31 E-value=94 Score=31.43 Aligned_cols=63 Identities=17% Similarity=0.111 Sum_probs=37.4
Q ss_pred cHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEe
Q 005357 155 TEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220 (700)
Q Consensus 155 teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~ 220 (700)
+.++.+++++.++.-. +.|.. +|-..|-+.+...+.++|.+|++.+-....+...+..|.|+.
T Consensus 25 ~~~~A~~~l~~~~~p~-~ViKa--dGla~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~~vvIEE 87 (194)
T PF01071_consen 25 DYEEALEYLEEQGYPY-VVIKA--DGLAAGKGVVIADDREEALEALREIFVDRKFGDAGSKVVIEE 87 (194)
T ss_dssp SHHHHHHHHHHHSSSE-EEEEE--SSSCTTTSEEEESSHHHHHHHHHHHHTSSTTCCCGSSEEEEE
T ss_pred CHHHHHHHHHhcCCCc-eEEcc--CCCCCCCEEEEeCCHHHHHHHHHHhccccccCCCCCcEEEEe
Confidence 4566666666654322 33333 344445556667999999999998765444443455565553
No 288
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=29.25 E-value=79 Score=30.45 Aligned_cols=55 Identities=15% Similarity=0.177 Sum_probs=35.8
Q ss_pred eeeccCCCccccHHHHHHHhcC-CC-ceeEEEEeeCCCCCccceEEEEeCCHHHHHHHH
Q 005357 144 KLFVGSLNKQATEKEVEEIFSP-YG-RVEDVYLMRDELKQSRGCGFVKYSHRDMALAAI 200 (700)
Q Consensus 144 ~LfV~nLp~~~teedL~~~F~~-fG-~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai 200 (700)
+.|+.-++...+..+|++.++. |+ .|..|..+....| .--|||.+....+|....
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g--~KKA~V~L~~~~~aidva 139 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDG--LKKAYIRLSPDVDALDVA 139 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCC--ceEEEEEECCCCcHHHHH
Confidence 4555556777888899888876 55 4667765544333 235899997766655443
No 289
>PLN02441 cytokinin dehydrogenase
Probab=29.18 E-value=1.3e+02 Score=35.15 Aligned_cols=49 Identities=10% Similarity=0.093 Sum_probs=33.8
Q ss_pred HHHHHHH----hccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc
Q 005357 66 EDIRPLF----EEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHN 115 (700)
Q Consensus 66 edL~elF----~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g 115 (700)
.||+..+ ..||-|++++|...+.- +...+.++.|.+.+++.+.++.+..
T Consensus 215 ~DLF~Av~GglG~fGIIT~atlrL~Pap-~~v~~~~~~y~~~~~~~~d~~~li~ 267 (525)
T PLN02441 215 SDLFFAVLGGLGQFGIITRARIALEPAP-KRVRWIRVLYSDFSTFTRDQERLIS 267 (525)
T ss_pred hhHHHhhccCCCCcEEEEEEEEEEEecC-CceEEEEEEcCCHHHHHHHHHHHHh
Confidence 4565554 35788998887765432 2345778889999998888887743
No 290
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=28.48 E-value=3.6e+02 Score=27.91 Aligned_cols=91 Identities=18% Similarity=0.231 Sum_probs=50.2
Q ss_pred CCceEEEeCCCC---------CCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCC
Q 005357 50 SFAKLFVGSVPK---------TAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLP 120 (700)
Q Consensus 50 ~~~tLfVgnLP~---------~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~ 120 (700)
....|.|+|..+ ..+.+.|.++|+++|- +|.+..| .+.++-+++|+++.......
T Consensus 8 ~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF--~V~~~~d--------------lt~~em~~~l~~~~~~~~~~ 71 (241)
T smart00115 8 RGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGY--EVHVKNN--------------LTAEEMLEELKEFAERPEHS 71 (241)
T ss_pred CcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCC--EEEEecC--------------CCHHHHHHHHHHHHhccccC
Confidence 446688888765 2467889999999984 4444444 36677788887764321111
Q ss_pred CccccceeecccccccccCcccceeeccCCCccccHHHHHHHhc
Q 005357 121 GGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFS 164 (700)
Q Consensus 121 g~~~~l~V~~a~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~ 164 (700)
.....+.+-.+.+. ...|+-.+ ...+..++|.++|.
T Consensus 72 ~~d~~v~~~~sHG~-------~~~l~~~D-~~~v~l~~i~~~f~ 107 (241)
T smart00115 72 DSDSFVCVLLSHGE-------EGGIYGTD-HSPLPLDEIFSLFN 107 (241)
T ss_pred CCCEEEEEEcCCCC-------CCeEEEec-CCEEEHHHHHHhcc
Confidence 12222222222221 12333222 12567788999994
No 291
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=28.26 E-value=69 Score=34.44 Aligned_cols=34 Identities=21% Similarity=0.189 Sum_probs=26.4
Q ss_pred EEEEeCCHHHHHHHHHHhcCceeccCCccceEEEecCCC
Q 005357 186 GFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224 (700)
Q Consensus 186 aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~~k 224 (700)
|||+|++.++|..|++.+.... .+.++|+.|-+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~-----~~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR-----PNSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC-----CCCceEeeCCCc
Confidence 7999999999999999766553 355677777554
No 292
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=28.12 E-value=3.1e+02 Score=21.86 Aligned_cols=46 Identities=15% Similarity=0.328 Sum_probs=30.7
Q ss_pred CcHHHHHHHHhccC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 005357 63 AREEDIRPLFEEHG-NVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112 (700)
Q Consensus 63 vteedL~elF~~~G-~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~ 112 (700)
-.-.+|.++|.+.| .|.++.+.... . +++--+.+++.+.|.+++++
T Consensus 13 G~La~v~~~l~~~~inI~~i~~~~~~---~-~~~~rl~~~~~~~~~~~L~~ 59 (66)
T cd04908 13 GRLAAVTEILSEAGINIRALSIADTS---E-FGILRLIVSDPDKAKEALKE 59 (66)
T ss_pred ChHHHHHHHHHHCCCCEEEEEEEecC---C-CCEEEEEECCHHHHHHHHHH
Confidence 35577888898887 67777764432 2 45666667777677777664
No 293
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=28.03 E-value=1.8e+02 Score=22.27 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCC-ceeEEEEeeCCCCCccceEEEEeCCHHHHHHHH
Q 005357 156 EKEVEEIFSPYG-RVEDVYLMRDELKQSRGCGFVKYSHRDMALAAI 200 (700)
Q Consensus 156 eedL~~~F~~fG-~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai 200 (700)
-.+|.+.|.+.| .|+++.+.... ..++...+++++.+.|.+++
T Consensus 12 l~~i~~~l~~~~inI~~~~~~~~~--~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 12 LAEVTEILAEAGINIKAISIAETR--GEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHHcCCCEeeEEEEEcc--CCcEEEEEEECCHHHHHHHh
Confidence 356667777766 58888776553 34667778889988887765
No 294
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=27.16 E-value=1e+02 Score=33.34 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=20.8
Q ss_pred ccceeeccCCCccccHHHHHHHhcCCCceeE
Q 005357 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171 (700)
Q Consensus 141 ~s~~LfV~nLp~~~teedL~~~F~~fG~V~~ 171 (700)
.+++||++ +.+..+.|+.-|..-|.+.+
T Consensus 240 ~S~~LFLG---YaVAa~Rlk~Q~d~~gi~vd 267 (443)
T COG3048 240 NSRTLFLG---YAVAAQRLKKQFDEQGIVVD 267 (443)
T ss_pred chhhhhhh---HHHHHHHHHHHHHhcCceec
Confidence 34566654 67788999999998887655
No 295
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=26.80 E-value=1.7e+02 Score=26.09 Aligned_cols=60 Identities=13% Similarity=0.272 Sum_probs=34.7
Q ss_pred CceEEEeCCCCCCcHHHHHHHHhcc--------CCeeEEEEeecCC-----CCCccc-EEEEEeCCHHHHHHHHHH
Q 005357 51 FAKLFVGSVPKTAREEDIRPLFEEH--------GNVIEVALIKDKK-----TGQQQG-CCFIKYATSEEADRAIRA 112 (700)
Q Consensus 51 ~~tLfVgnLP~~vteedL~elF~~~--------G~V~~i~i~~d~~-----Tg~skG-~aFVeF~~~edA~~Ai~~ 112 (700)
..++|| |..+.+++++..+.+++ |.|.++...-.++ .+..+| |.++.|+...++-+.++.
T Consensus 8 YE~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler 81 (97)
T CHL00123 8 YETMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK 81 (97)
T ss_pred eeEEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH
Confidence 456777 45677777766655443 4666655332211 144566 578888866666555554
No 296
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=26.78 E-value=78 Score=27.30 Aligned_cols=34 Identities=15% Similarity=0.357 Sum_probs=23.4
Q ss_pred CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc
Q 005357 77 NVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHN 115 (700)
Q Consensus 77 ~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g 115 (700)
.|.+|.... ..+||-|||=.+.+++.+|++.+.+
T Consensus 33 ~I~Si~~~~-----~lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 33 NIYSIFAPD-----SLKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp ---EEEE-T-----TSTSEEEEEESSHHHHHHHHTT-TT
T ss_pred ceEEEEEeC-----CCceEEEEEeCCHHHHHHHHhcccc
Confidence 455655433 3679999999999999999987643
No 297
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=26.19 E-value=2.2e+02 Score=26.79 Aligned_cols=59 Identities=10% Similarity=0.111 Sum_probs=39.7
Q ss_pred ccHHHHHHHhcCCCc-eeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEecC
Q 005357 154 ATEKEVEEIFSPYGR-VEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222 (700)
Q Consensus 154 ~teedL~~~F~~fG~-V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~ 222 (700)
.+.+.|++.++.-|. ++.+..-.+ ...|+|++.|+-.+|.+.|....- ++..|.+..+.
T Consensus 50 ~~~~~v~~~L~~~gI~~ksi~~~~~-------~~~irf~~~~~Ql~Ak~vL~~~L~---~~y~VAlnl~p 109 (127)
T PRK10629 50 PDGFYVYQHLDANGIHIKSITPEND-------SLLIRFDSPEQSAAAKEVLDRTLP---HGYIIAQQDDN 109 (127)
T ss_pred chHHHHHHHHHHCCCCcceEEeeCC-------EEEEEECCHHHHHHHHHHHHHHcC---CCCEEEEecCC
Confidence 456778888877663 555544322 678999999999999988876542 34455555544
No 298
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=25.71 E-value=2.2e+02 Score=29.67 Aligned_cols=57 Identities=25% Similarity=0.420 Sum_probs=40.3
Q ss_pred EeCCCCCCcHHHHHH-HHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 005357 56 VGSVPKTAREEDIRP-LFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113 (700)
Q Consensus 56 VgnLP~~vteedL~e-lF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L 113 (700)
.+.++.+--++.|+. .|+.++++..+++.++++||... ..|..=+++|+..++++.|
T Consensus 12 ~g~i~~~~a~~~i~~~~~~~~~~~~k~D~~R~~RtG~pE-vv~a~gKt~eqi~~i~~~~ 69 (254)
T COG1691 12 SGKISLEEAEEQIKSLAFESLGEFAKLDIHREKRTGFPE-VVFAPGKTPEQIVEIVEVL 69 (254)
T ss_pred cCCccHHHHHHHHhhhhhhhhchhhhccchhhccCCCce-EeecCCCCHHHHHHHHHHH
Confidence 345555555667776 68889988888888887766433 3445557899988888876
No 299
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.38 E-value=6.3e+02 Score=25.81 Aligned_cols=22 Identities=18% Similarity=0.061 Sum_probs=17.6
Q ss_pred cEEEEEeCCHHHHHHHHHHhcc
Q 005357 94 GCCFIKYATSEEADRAIRALHN 115 (700)
Q Consensus 94 G~aFVeF~~~edA~~Ai~~L~g 115 (700)
.+.+|.+.+.+.++.+.+.|-.
T Consensus 97 ~~~~v~~d~~~~g~~~~~~l~~ 118 (272)
T cd06313 97 VHSFLAPDNYFMGASVAQALCN 118 (272)
T ss_pred eEEEECCCcHHHHHHHHHHHHH
Confidence 3677899999999988887743
No 300
>PRK10905 cell division protein DamX; Validated
Probab=25.09 E-value=1.1e+02 Score=33.21 Aligned_cols=61 Identities=21% Similarity=0.238 Sum_probs=38.4
Q ss_pred CCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcc-cEEEEEeCCHHHHHHHHHHhc
Q 005357 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQ-GCCFIKYATSEEADRAIRALH 114 (700)
Q Consensus 50 ~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~sk-G~aFVeF~~~edA~~Ai~~L~ 114 (700)
.+.+|=|+-+ .+++.|++|..++| +....+....++|+.. -.-+=.|.+.++|++||+.|-
T Consensus 246 ~~YTLQL~A~---Ss~~~l~~fakKlg-L~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLP 307 (328)
T PRK10905 246 SHYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLP 307 (328)
T ss_pred CceEEEEEec---CCHHHHHHHHHHcC-CCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCC
Confidence 3455555544 56688888888885 4444455544444422 122226899999999999874
No 301
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=24.91 E-value=86 Score=26.15 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=36.9
Q ss_pred HHHHHHhcCCC-ceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEecCC
Q 005357 157 KEVEEIFSPYG-RVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223 (700)
Q Consensus 157 edL~~~F~~fG-~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~~ 223 (700)
++|++.|...| .|..|.-+... ++..-...||+++...+..+++ +=+.+ |+..|+|+..+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~---~Ik~l---~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY---KIKTL---CGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee---ehHhh---CCeEEEEecCCC
Confidence 57888888877 47776655554 4555567788887765533332 22333 556666665443
No 302
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.86 E-value=3.1e+02 Score=32.48 Aligned_cols=101 Identities=15% Similarity=0.190 Sum_probs=62.3
Q ss_pred cHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc--c---ccCCCccccceeeccccccccc
Q 005357 64 REEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHN--Q---HTLPGGVGPIQVRYADGERERL 138 (700)
Q Consensus 64 teedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g--~---~~~~g~~~~l~V~~a~~~~~~~ 138 (700)
--++|.+.|..-+.|.+|.+... ||-++.+....-++..++.+.. . ....++..++.|++...+
T Consensus 59 iA~~i~~~l~~~~~~~~veiaGp-------gfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaN---- 127 (577)
T COG0018 59 IAEEIAEKLDTDEIIEKVEIAGP-------GFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSAN---- 127 (577)
T ss_pred HHHHHHHhccccCcEeEEEEcCC-------CEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCC----
Confidence 34566666666556777776432 3555544544444444444431 1 122233455677776643
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCC-ceeEEEEeeC
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYG-RVEDVYLMRD 177 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG-~V~~v~I~~d 177 (700)
...-++|+-|-..+--+-|.++++..| .|+....+.|
T Consensus 128 --ptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD 165 (577)
T COG0018 128 --PTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVND 165 (577)
T ss_pred --CCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECc
Confidence 345799999888888899999999888 4777777766
No 303
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=24.54 E-value=2.3e+02 Score=23.57 Aligned_cols=52 Identities=15% Similarity=0.119 Sum_probs=30.5
Q ss_pred ccHHHHHHHhcCCCc-eeEEEEeeCCCCCccceEEEEeC-CHHHHHHHHHHhcC
Q 005357 154 ATEKEVEEIFSPYGR-VEDVYLMRDELKQSRGCGFVKYS-HRDMALAAINALNG 205 (700)
Q Consensus 154 ~teedL~~~F~~fG~-V~~v~I~~d~~g~srG~aFVeF~-~~e~A~~Ai~~Lng 205 (700)
-.-.++.+.|+.+|- +..|.-...+.....-+-||+|+ +.++..+|++.|..
T Consensus 12 G~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 12 GALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred cHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 345678888888863 44443322222222334578887 55566778877764
No 304
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=24.26 E-value=30 Score=35.42 Aligned_cols=11 Identities=0% Similarity=0.184 Sum_probs=7.3
Q ss_pred CcHHHHHHHHh
Q 005357 63 AREEDIRPLFE 73 (700)
Q Consensus 63 vteedL~elF~ 73 (700)
++++||...+.
T Consensus 74 i~~~eLq~aLs 84 (221)
T KOG0037|consen 74 ILAKELQQALS 84 (221)
T ss_pred ccHHHHHHHhh
Confidence 46677777765
No 305
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.87 E-value=2.7e+02 Score=27.04 Aligned_cols=58 Identities=17% Similarity=0.334 Sum_probs=41.1
Q ss_pred CCceEEEeCCCCCCcHHHHHHHHhcc---CCeeEEEEeecCCC---------CCccc-EEEEEeCCHHHHH
Q 005357 50 SFAKLFVGSVPKTAREEDIRPLFEEH---GNVIEVALIKDKKT---------GQQQG-CCFIKYATSEEAD 107 (700)
Q Consensus 50 ~~~tLfVgnLP~~vteedL~elF~~~---G~V~~i~i~~d~~T---------g~skG-~aFVeF~~~edA~ 107 (700)
+..+||+..+...++|++.++..++- +++.+|.+-+.+++ ...+. |-+|.|++-+..+
T Consensus 86 d~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~lk 156 (161)
T COG5353 86 DDGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKELK 156 (161)
T ss_pred CCCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchhhh
Confidence 34789999999999999999999875 45666666554321 22344 8889998865543
No 306
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=23.82 E-value=3.5e+02 Score=20.97 Aligned_cols=60 Identities=17% Similarity=0.194 Sum_probs=31.5
Q ss_pred eEEEeCCCCCCcHHHHHHHHhccC-CeeEEEEeecCCCCCcccEEEEEeCCH-HHHHHHHHHhc
Q 005357 53 KLFVGSVPKTAREEDIRPLFEEHG-NVIEVALIKDKKTGQQQGCCFIKYATS-EEADRAIRALH 114 (700)
Q Consensus 53 tLfVgnLP~~vteedL~elF~~~G-~V~~i~i~~d~~Tg~skG~aFVeF~~~-edA~~Ai~~L~ 114 (700)
+|.|.--...-.-.+|.++|..++ .|.++....+...+. ...++++... +..+.+++.|.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~ 63 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGI--SRITIVVEGDDDVIEQIVKQLN 63 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCe--EEEEEEEECCHHHHHHHHHHHh
Confidence 455544444444667888898886 566666543311122 2233333322 56666666663
No 307
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification]
Probab=23.56 E-value=1.4e+03 Score=28.30 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=33.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHhcccccCCCccccceeecccccccccCcccceeeccCCCccccHHHHHHHhcCC
Q 005357 93 QGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPY 166 (700)
Q Consensus 93 kG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~~a~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~f 166 (700)
.|.|.+-|-|+.-..+|++..-... ...+..+.......|||++-.... +-|+.+.++.
T Consensus 631 QGIalLPFiDe~rLl~a~~~~y~~L-------------t~EE~~RN~rg~d~Lfi~~~hp~~--e~i~~lysk~ 689 (931)
T KOG2044|consen 631 QGIALLPFIDERRLLSAVAKVYPTL-------------TDEEKRRNSRGPDLLFISDKHPLF--EFILQLYSKK 689 (931)
T ss_pred cccccccccchhhHHHHHHhhcccc-------------CHHHHhccccCCceEEecCCCchH--HHHHHHHHhh
Confidence 4677777777766666665432111 122233334445678888765544 5666666654
No 308
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.55 E-value=19 Score=40.24 Aligned_cols=67 Identities=9% Similarity=-0.075 Sum_probs=52.5
Q ss_pred CceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhccccc
Q 005357 51 FAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHT 118 (700)
Q Consensus 51 ~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~ 118 (700)
+.+.|+..|+..++++++.-+|..||.|.-+.+.+..+.+..+-.+||...+ +++..||..+....+
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~ 69 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTT 69 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhh
Confidence 3567888999999999999999999999999888877767778888887654 456667766644333
No 309
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=23.24 E-value=2e+02 Score=27.80 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=37.6
Q ss_pred EEEeCCCCCCcHHHHHHHHhc-cC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 005357 54 LFVGSVPKTAREEDIRPLFEE-HG-NVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112 (700)
Q Consensus 54 LfVgnLP~~vteedL~elF~~-~G-~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~ 112 (700)
-|+=.++.+.+..+|++.++. |+ .|..|+.+..+. | .--|||.+....+|.+....
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g--~KKA~V~L~~~~~aidva~k 141 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-G--LKKAYIRLSPDVDALDVANK 141 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-C--ceEEEEEECCCCcHHHHHHh
Confidence 344446679999999999986 55 567777666543 2 22589999877776554443
No 310
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=23.13 E-value=1.2e+02 Score=36.21 Aligned_cols=83 Identities=20% Similarity=0.374 Sum_probs=53.7
Q ss_pred EEEEEeCCHHHHHHHHHHhcccccCCCccccc-----------eeeccccccc-----ccCcccceeeccCCCccccHHH
Q 005357 95 CCFIKYATSEEADRAIRALHNQHTLPGGVGPI-----------QVRYADGERE-----RLGAVEYKLFVGSLNKQATEKE 158 (700)
Q Consensus 95 ~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l-----------~V~~a~~~~~-----~~~~~s~~LfV~nLp~~~teed 158 (700)
.||+.+.+.+.-+-..+.|+...++.|...-+ .+++.+.... ..+..+..+|+.++.-+..++.
T Consensus 238 ~c~~t~t~~~t~~ii~~~~~~s~~~~g~i~~~gpRYCpsiE~k~~rf~~~~~h~v~lepeg~~~~~~y~~G~stslp~~~ 317 (618)
T PRK05192 238 PCYITYTNEETHEIIRENLHRSPMYSGVIEGVGPRYCPSIEDKIVRFADKDRHQIFLEPEGLDTNEVYPNGISTSLPEDV 317 (618)
T ss_pred eCCCCcCcHHHHHHHHhhcccccCcCcccCCCCCCCCCCHHHHhhhcCCCCCceEEEecCCCCCCEEeccCccCCCCHHH
Confidence 48888888876555556666554555421000 1223322211 1234567899999999999999
Q ss_pred HHHHhcCCCceeEEEEeeC
Q 005357 159 VEEIFSPYGRVEDVYLMRD 177 (700)
Q Consensus 159 L~~~F~~fG~V~~v~I~~d 177 (700)
=.++|...-.+++++|++.
T Consensus 318 Q~~~~r~ipGle~a~i~r~ 336 (618)
T PRK05192 318 QLEMLRSIPGLENAEILRP 336 (618)
T ss_pred HHHHHhcCcCccceeEeec
Confidence 8999998888888888875
No 311
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=23.12 E-value=3.6e+02 Score=22.27 Aligned_cols=64 Identities=19% Similarity=0.289 Sum_probs=45.1
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhccC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc
Q 005357 52 AKLFVGSVPKTAREEDIRPLFEEHG-NVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHN 115 (700)
Q Consensus 52 ~tLfVgnLP~~vteedL~elF~~~G-~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g 115 (700)
.+|.|...+..---.||...+...| .|.++.+...+..+......-|+..|.++....++.|..
T Consensus 7 ~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~ 71 (80)
T PF13291_consen 7 VRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQ 71 (80)
T ss_dssp EEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCT
T ss_pred EEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHC
Confidence 4566666666666778888898887 688888877543456666666777899999999998843
No 312
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=22.93 E-value=2.6e+02 Score=21.64 Aligned_cols=57 Identities=21% Similarity=0.353 Sum_probs=34.7
Q ss_pred EEEeCCCCCCcHHHHHHHHhccC-CeeEEEEeecCCCCCcccEEEEEe-CCHHHHHHHHHHh
Q 005357 54 LFVGSVPKTAREEDIRPLFEEHG-NVIEVALIKDKKTGQQQGCCFIKY-ATSEEADRAIRAL 113 (700)
Q Consensus 54 LfVgnLP~~vteedL~elF~~~G-~V~~i~i~~d~~Tg~skG~aFVeF-~~~edA~~Ai~~L 113 (700)
|.|..-+.-=.-.+|.++|.+.| .|..+....+... ..+.|+.+ .+.++.++++++|
T Consensus 3 v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l 61 (66)
T PF01842_consen 3 VRVIVPDRPGILADVTEILADHGINIDSISQSSDKDG---VGIVFIVIVVDEEDLEKLLEEL 61 (66)
T ss_dssp EEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESST---TEEEEEEEEEEGHGHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCC---ceEEEEEEECCCCCHHHHHHHH
Confidence 44433344445678888998887 6777777666432 34555554 3555666666665
No 313
>smart00833 CobW_C Cobalamin synthesis protein cobW C-terminal domain. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis PUBMED:12869542. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression PUBMED:7765511.
Probab=22.90 E-value=2.7e+02 Score=23.53 Aligned_cols=23 Identities=9% Similarity=0.199 Sum_probs=16.0
Q ss_pred CCCCCcHHHHHHHHhcc-CCeeEE
Q 005357 59 VPKTAREEDIRPLFEEH-GNVIEV 81 (700)
Q Consensus 59 LP~~vteedL~elF~~~-G~V~~i 81 (700)
.+..++.++|..+++.. +.|..+
T Consensus 8 ~~~~~~~~~l~~~l~~l~~~i~R~ 31 (92)
T smart00833 8 ARRPFHPQRLLAALDELPEGVLRA 31 (92)
T ss_pred cCCCCCHHHHHHHHHhccCCeEEE
Confidence 45667889999988876 444444
No 314
>PRK04204 RNA 3'-terminal-phosphate cyclase; Provisional
Probab=22.86 E-value=3.9e+02 Score=29.52 Aligned_cols=118 Identities=17% Similarity=0.196 Sum_probs=58.2
Q ss_pred CceEEEeCC---CCCCcHHHHH----HHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcc
Q 005357 51 FAKLFVGSV---PKTAREEDIR----PLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGV 123 (700)
Q Consensus 51 ~~tLfVgnL---P~~vteedL~----elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~ 123 (700)
..+|-+.+. +++-+-|.++ .++++||--.+++|.+.-. ..+|=+-|.|.-.-. .++.+ .+.+.+
T Consensus 113 ~~~l~l~GgT~~~~sPsvDy~~~v~lP~l~~~G~~~~l~i~rRG~--yP~GGGeV~~~i~p~---~l~pi---~l~e~G- 183 (343)
T PRK04204 113 PSRVTITGGTDVPWAPPIDYIRRVTLPLLRRMGIEAEIELLRRGF--YPAGGGEVALEVEPS---KLRPL---ELLERG- 183 (343)
T ss_pred CeEEEEEcccCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEEeCCc--cCCCCeEEEEEEccC---Cccce---eeccCC-
Confidence 345555443 3344444444 4568899767777766421 234445666643221 12211 111111
Q ss_pred ccceeecccccccccCcccceeeccCCCccccHHHHHH-----HhcCCCceeEEEEeeCCCCCccceEEEEe
Q 005357 124 GPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEE-----IFSPYGRVEDVYLMRDELKQSRGCGFVKY 190 (700)
Q Consensus 124 ~~l~V~~a~~~~~~~~~~s~~LfV~nLp~~~teedL~~-----~F~~fG~V~~v~I~~d~~g~srG~aFVeF 190 (700)
... ......|+.+|+.++.+..++. ++..+....++.+...+.+.+.|++++-+
T Consensus 184 ~i~-------------~irg~~~~~~l~~~ia~R~~~~a~~~~~l~~~~~~~~i~~~~~~~~~s~G~gi~L~ 242 (343)
T PRK04204 184 ELL-------------RIRGISHVANLPEHVAERQAKAAAELLALSLGLIEIEINVEELSRGLGPGSGIVLW 242 (343)
T ss_pred CcE-------------EEEEEEEecCCCHHHHHHHHHHHhhhhhhhccCCCceeEEeeccCCCCCceEEEEE
Confidence 011 1123567888998887765554 33333333344444444566777765433
No 315
>PRK11901 hypothetical protein; Reviewed
Probab=22.75 E-value=92 Score=33.89 Aligned_cols=59 Identities=14% Similarity=0.080 Sum_probs=38.7
Q ss_pred ceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceE--EEEeCCHHHHHHHHHHhcCc
Q 005357 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCG--FVKYSHRDMALAAINALNGI 206 (700)
Q Consensus 143 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~a--FVeF~~~e~A~~Ai~~Lng~ 206 (700)
++|-|..+ .++++|++|.++++ +..++|.+.. +|+.| |. +=+|.++++|.+|++.|-..
T Consensus 246 YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 246 YTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred eEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCHH
Confidence 44555543 34777887777774 4556665543 45555 43 34689999999999987543
No 316
>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=22.73 E-value=99 Score=36.82 Aligned_cols=90 Identities=17% Similarity=0.219 Sum_probs=56.8
Q ss_pred CCcHHHHHHHHhccCCeeEEEEeecCCC-CCcccEEEEEeCCHHHHHHHH-HHhcccccCCCccccceeecccccccccC
Q 005357 62 TAREEDIRPLFEEHGNVIEVALIKDKKT-GQQQGCCFIKYATSEEADRAI-RALHNQHTLPGGVGPIQVRYADGERERLG 139 (700)
Q Consensus 62 ~vteedL~elF~~~G~V~~i~i~~d~~T-g~skG~aFVeF~~~edA~~Ai-~~L~g~~~~~g~~~~l~V~~a~~~~~~~~ 139 (700)
.+...||++.+..+..|.++-++-..+. +...-+|||.+++-......| ++|.. .+ + .+-....
T Consensus 507 RigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g~~~~~~L~kel~~-~V----------R---~~igp~a 572 (626)
T KOG1175|consen 507 RIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSGSHDPEQLTKELVK-HV----------R---SVIGPYA 572 (626)
T ss_pred eecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCCCCChHHHHHHHHH-HH----------H---hhcCccc
Confidence 3577899999999999999888764321 334558999997643322222 22211 11 0 0011113
Q ss_pred cccceeeccCCCccccHHHHHHHhcC
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSP 165 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~ 165 (700)
..+..+||.+||+..+-+.+|..+++
T Consensus 573 ~P~~I~~v~~LPkTrSGKimRr~lrk 598 (626)
T KOG1175|consen 573 VPRLIVFVPGLPKTRSGKIMRRALRK 598 (626)
T ss_pred ccceeEecCCCCccccchhHHHHHHH
Confidence 44668999999999888877777765
No 317
>PF02998 Lentiviral_Tat: Lentiviral Tat protein; InterPro: IPR004247 This family contains retroviral transactivating (Tat) proteins, from a variety of lentiviruses. The Tat protein may have a role in trans-activation of the viral long terminal repeat [].; GO: 0045893 positive regulation of transcription, DNA-dependent
Probab=22.64 E-value=54 Score=28.11 Aligned_cols=16 Identities=25% Similarity=0.806 Sum_probs=12.4
Q ss_pred hhhHHHHHhhhhcCCC
Q 005357 683 QGLQAAQDWMWKNKPS 698 (700)
Q Consensus 683 ~~~~~~~~~~~~~~~~ 698 (700)
..|.-+|.|||||..|
T Consensus 54 kV~rEmQkwmWr~pkA 69 (86)
T PF02998_consen 54 KVYREMQKWMWRHPKA 69 (86)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 3577889999998665
No 318
>KOG1891 consensus Proline binding protein WW45 [General function prediction only]
Probab=22.54 E-value=57 Score=33.46 Aligned_cols=33 Identities=27% Similarity=0.672 Sum_probs=28.9
Q ss_pred CCCCCceeeeCCCCCcccccCCcCcccccCChh
Q 005357 556 PAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 588 (700)
Q Consensus 556 ~~~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~ 588 (700)
+....|..--+-+||+||-+-+|+.+-|.-|-|
T Consensus 93 PLPpgWav~~T~~grkYYIDHn~~tTHW~HPle 125 (271)
T KOG1891|consen 93 PLPPGWAVEFTTEGRKYYIDHNNRTTHWVHPLE 125 (271)
T ss_pred CCCCCcceeeEecCceeEeecCCCcccccChhh
Confidence 335679888899999999999999999999976
No 319
>COG2004 RPS24A Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]
Probab=22.44 E-value=1.8e+02 Score=26.63 Aligned_cols=47 Identities=26% Similarity=0.408 Sum_probs=30.3
Q ss_pred CCCcHHHHHHHHh-ccCCeeEEEEeecCCC----CCcccEEEEEeCCHHHHHH
Q 005357 61 KTAREEDIRPLFE-EHGNVIEVALIKDKKT----GQQQGCCFIKYATSEEADR 108 (700)
Q Consensus 61 ~~vteedL~elF~-~~G~V~~i~i~~d~~T----g~skG~aFVeF~~~edA~~ 108 (700)
.+-+.+||++.+. -+|.-.++.++..-.| ++++||+-| |+|.+.+.+
T Consensus 30 ~TPSr~evrekla~~l~~d~e~VvV~~ikt~fG~~~s~g~akI-Y~s~e~~~~ 81 (107)
T COG2004 30 PTPSRKEVREKLAAMLGADKELVVVDYIKTEFGKGRSKGYAKI-YDSVERAKK 81 (107)
T ss_pred CCCCHHHHHHHHHHHHCCCcceEEEEehhhhcCCcceeEEEEE-ECCHHHHHh
Confidence 5667888888775 4565445555544333 577888876 677776654
No 320
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=22.41 E-value=52 Score=36.50 Aligned_cols=120 Identities=17% Similarity=0.275 Sum_probs=67.3
Q ss_pred eCCCCCCcHHHHHHHH----hccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhc--------ccccCCCccc
Q 005357 57 GSVPKTAREEDIRPLF----EEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALH--------NQHTLPGGVG 124 (700)
Q Consensus 57 gnLP~~vteedL~elF----~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~--------g~~~~~g~~~ 124 (700)
.+|-++-|--||+.+| ...|-|..+.|+.-++ -++-..||+-.++-+++.+++.+.. .-++++.+..
T Consensus 230 ~slRKDNTgydlkhLFIGSEGtlGVvT~vSil~~~k-pksvn~af~gi~sf~~v~k~fv~Aks~L~EILSafElmD~~s~ 308 (511)
T KOG1232|consen 230 SSLRKDNTGYDLKHLFIGSEGTLGVVTKVSILAPPK-PKSVNVAFIGIESFDDVQKVFVEAKSNLTEILSAFELMDNASM 308 (511)
T ss_pred hhhcccCccccchhheecCCceeeEEeeEEEeecCC-CcceeEEEEccccHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Confidence 3445566667788887 3467788888877553 4556689999999999888774321 2233444443
Q ss_pred cceeeccccccccc-Ccccceeec--cCCCccccHHHHHHHhcCC---CceeEEEEeeC
Q 005357 125 PIQVRYADGERERL-GAVEYKLFV--GSLNKQATEKEVEEIFSPY---GRVEDVYLMRD 177 (700)
Q Consensus 125 ~l~V~~a~~~~~~~-~~~s~~LfV--~nLp~~~teedL~~~F~~f---G~V~~v~I~~d 177 (700)
.+..++-+.-.... +....-|.| .+-+.+-+++.|..+++.. |.|.+-.+-.|
T Consensus 309 ~~~~~~l~~l~~pl~~~~pFyiLiETsGSn~dhD~eKl~afl~d~lek~lIsDGv~a~d 367 (511)
T KOG1232|consen 309 ELVLEYLKDLHFPLEDEHPFYILIETSGSNKDHDEEKLTAFLEDCLEKGLISDGVLAQD 367 (511)
T ss_pred HHHHHHhccCCCCccCCCceEEEEEecCCCccccHHHHHHHHHHhhhhcccccceecCC
Confidence 33333333111111 111222333 3556666777777776653 44555444444
No 321
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=22.38 E-value=1.5e+02 Score=24.40 Aligned_cols=19 Identities=21% Similarity=0.517 Sum_probs=15.2
Q ss_pred HHHHHHHHhccCCeeEEEE
Q 005357 65 EEDIRPLFEEHGNVIEVAL 83 (700)
Q Consensus 65 eedL~elF~~~G~V~~i~i 83 (700)
..+||++|+.+|+|.-+.+
T Consensus 8 ~~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHHhcCcEEEEEE
Confidence 3689999999999775544
No 322
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=22.34 E-value=1.6e+02 Score=28.31 Aligned_cols=31 Identities=13% Similarity=0.336 Sum_probs=23.8
Q ss_pred eeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 005357 78 VIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113 (700)
Q Consensus 78 V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L 113 (700)
|.+|.+... ..||.||+.+..+++..+++.+
T Consensus 36 i~~i~vp~~-----fpGYVfVe~~~~~~~~~~i~~v 66 (153)
T PRK08559 36 IYAILAPPE-----LKGYVLVEAESKGAVEEAIRGI 66 (153)
T ss_pred EEEEEccCC-----CCcEEEEEEEChHHHHHHHhcC
Confidence 556655443 6899999999888888888765
No 323
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=21.98 E-value=2.6e+02 Score=24.49 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=34.8
Q ss_pred HHHHHHHhcCCC-ceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcC
Q 005357 156 EKEVEEIFSPYG-RVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNG 205 (700)
Q Consensus 156 eedL~~~F~~fG-~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng 205 (700)
++.++++++++| +|+++.+... ..-.+..+++.|.+.|.++...+..
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G---~yD~v~i~eaPD~~~a~~~~l~i~~ 69 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLG---EYDFVVIVEAPDDETAAAASLAIRS 69 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecC---CCCEEEEEEcCCHHHHHHHHHHHHc
Confidence 456788888775 6888877654 3455788999999999888766554
No 324
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=21.98 E-value=2.6e+02 Score=31.84 Aligned_cols=47 Identities=11% Similarity=0.180 Sum_probs=31.3
Q ss_pred CCcHHHHHHHHhccCCe-eEEEEeecCCCCCcccEEEEE--e-CCHHHHHHHHHHh
Q 005357 62 TAREEDIRPLFEEHGNV-IEVALIKDKKTGQQQGCCFIK--Y-ATSEEADRAIRAL 113 (700)
Q Consensus 62 ~vteedL~elF~~~G~V-~~i~i~~d~~Tg~skG~aFVe--F-~~~edA~~Ai~~L 113 (700)
.++.++|++.++.|-.+ -++.++... .++.||. | .|++.++.+++.+
T Consensus 316 gi~~~~i~~~L~~~~~~~gR~E~i~~~-----~~~~iiDDs~ahNp~a~~aaL~~l 366 (480)
T PRK01438 316 GVPPAAVRDGLRAFRPDAHRIEHVADA-----DGVTWVDDSKATNPHAAAASLAAY 366 (480)
T ss_pred CCCHHHHHHHHHhCCCCCCceEEEEEE-----CCEEEEecCccCCHHHHHHHHHhC
Confidence 46788888888877544 344444321 2466777 5 3788899998877
No 325
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=21.98 E-value=51 Score=36.62 Aligned_cols=60 Identities=22% Similarity=0.259 Sum_probs=49.4
Q ss_pred cceeeccCCCccccHH--------HHHHHhcC--CCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHH
Q 005357 142 EYKLFVGSLNKQATEK--------EVEEIFSP--YGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAIN 201 (700)
Q Consensus 142 s~~LfV~nLp~~~tee--------dL~~~F~~--fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~ 201 (700)
.+.+|+.++....+.+ ++...|.. ++.+..|+..++. +...+|..|++|...+.|.++..
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 4568888888776555 99999998 6678888887776 56788999999999999999874
No 326
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=21.94 E-value=4.6e+02 Score=21.67 Aligned_cols=52 Identities=19% Similarity=0.297 Sum_probs=30.6
Q ss_pred CcHHHHHHHHhccC-CeeEEEEeecCCCCCcccEEEEEeC-CHHHHHHHHHHhcc
Q 005357 63 AREEDIRPLFEEHG-NVIEVALIKDKKTGQQQGCCFIKYA-TSEEADRAIRALHN 115 (700)
Q Consensus 63 vteedL~elF~~~G-~V~~i~i~~d~~Tg~skG~aFVeF~-~~edA~~Ai~~L~g 115 (700)
-.-.++.+.|+.+| .+..|.-...+. ....=+-||+|+ +.++.++|++.|..
T Consensus 12 G~L~~vL~~f~~~~iNlt~IeSRP~~~-~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 12 GALARALKLFEEFGVNLTHIESRPSRR-NGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred cHHHHHHHHHHHCCCcEEEEECCCCCC-CCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 34567888888887 444443332221 222234567777 55667788888743
No 327
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=21.81 E-value=4.4e+02 Score=21.45 Aligned_cols=52 Identities=17% Similarity=0.317 Sum_probs=33.2
Q ss_pred CcHHHHHHHHhccC-CeeEEEEeecCCCCCcccEEEEEeCC---HHHHHHHHHHhcc
Q 005357 63 AREEDIRPLFEEHG-NVIEVALIKDKKTGQQQGCCFIKYAT---SEEADRAIRALHN 115 (700)
Q Consensus 63 vteedL~elF~~~G-~V~~i~i~~d~~Tg~skG~aFVeF~~---~edA~~Ai~~L~g 115 (700)
-.-.++.+.|+.+| .|.+|.-...+. ....-.-||+++. .+..+++++.|..
T Consensus 11 G~L~~vL~~f~~~~vni~~I~Srp~~~-~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 11 GALAKALKVFAERGINLTKIESRPSRK-GLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred CHHHHHHHHHHHCCCCEEEEEeeecCC-CCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 44678889999987 566664433322 2334466788874 5667788887743
No 328
>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members of this protein family are RNA 3'-phosphate cyclase (6.5.1.4), an enzyme whose function is conserved from E. coli to human. The modification this enzyme performs enables certain RNA ligations to occur, although the full biological roll for this enzyme is not fully described. This model separates this enzyme from a related protein, present only in eukaryotes, localized to the nucleolus, and involved in ribosomal modification.
Probab=21.78 E-value=3.7e+02 Score=29.39 Aligned_cols=119 Identities=16% Similarity=0.163 Sum_probs=56.8
Q ss_pred CceEEEeCC---CCCCcHHHHH----HHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcc
Q 005357 51 FAKLFVGSV---PKTAREEDIR----PLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGV 123 (700)
Q Consensus 51 ~~tLfVgnL---P~~vteedL~----elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~ 123 (700)
..+|-|.+. +++-+-|.++ .++++||.-.+++|.+.-- ..+|=+-|.|.-.-- + .++.+ .+.+ +.
T Consensus 111 p~~l~l~GgT~~~~sPsvDy~~~v~lP~l~~~G~~~~l~v~rRG~--yP~GGGeV~~~i~p~-~-~l~~i---~l~~-~G 182 (326)
T TIGR03399 111 PSRVTVSGGTDVPWAPPVDYLRNVFLPLLERMGIRAELELLRRGF--YPRGGGEVRLRVEPV-K-KLKPL---ELEE-RG 182 (326)
T ss_pred CeEEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCcEEEEEEeCCc--CCCCCEEEEEEEccc-c-CCCce---eeec-CC
Confidence 345555443 3333445544 4568899877788776422 233445555532211 0 11111 1111 00
Q ss_pred ccceeecccccccccCcccceeeccCCCccccHHH---HHHHhcCCCceeEEEEeeCCCCCccceEEEEe
Q 005357 124 GPIQVRYADGERERLGAVEYKLFVGSLNKQATEKE---VEEIFSPYGRVEDVYLMRDELKQSRGCGFVKY 190 (700)
Q Consensus 124 ~~l~V~~a~~~~~~~~~~s~~LfV~nLp~~~teed---L~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF 190 (700)
.. .......|+.+|+..+.+.. .++++.+++...++.+...+.+.+.|++++-+
T Consensus 183 ~i-------------~~i~g~~~~~~l~~~va~r~~~~a~~~L~~~~~~~~i~~~~~~~~~s~G~~i~L~ 239 (326)
T TIGR03399 183 EL-------------LRVSGIAHAANLPAHVAERMAKAAREELRKLGLDPEIEIEVLDKGLGPGSGIVLW 239 (326)
T ss_pred ce-------------EEEEEEEEEccCCHHHHHHHHHHHHHHHHhhCCCceEEEEeccCCCCCcEEEEEE
Confidence 00 11223667888988876644 34556665543333332213455666665444
No 329
>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]
Probab=21.55 E-value=5.4e+02 Score=29.91 Aligned_cols=88 Identities=14% Similarity=0.275 Sum_probs=52.2
Q ss_pred CCCcHHHHHHHHhccCCeeEEEEeecCCCCC-cccEEEEEeCCHHHH---HHHHHHh-cccccCCCccccceeecccccc
Q 005357 61 KTAREEDIRPLFEEHGNVIEVALIKDKKTGQ-QQGCCFIKYATSEEA---DRAIRAL-HNQHTLPGGVGPIQVRYADGER 135 (700)
Q Consensus 61 ~~vteedL~elF~~~G~V~~i~i~~d~~Tg~-skG~aFVeF~~~edA---~~Ai~~L-~g~~~~~g~~~~l~V~~a~~~~ 135 (700)
.++-.++|++||.++-.|+++.|+--+++.. ..-+|.|.....++- .+-|+++ .++ +
T Consensus 492 ENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~e~~~t~E~lKa~Ck~k-l----------------- 553 (596)
T KOG1177|consen 492 ENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQEGAEGKTTAETLKAMCKGK-L----------------- 553 (596)
T ss_pred cccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEeeccccccccHHHHHHHHhcc-c-----------------
Confidence 4678899999999999999998887554321 123566665443331 1111111 111 1
Q ss_pred cccCcccceeeccCCCcccc----HHHHHHHhcCC
Q 005357 136 ERLGAVEYKLFVGSLNKQAT----EKEVEEIFSPY 166 (700)
Q Consensus 136 ~~~~~~s~~LfV~nLp~~~t----eedL~~~F~~f 166 (700)
.-.+.+..-|||.++|..+| +.+|++.++..
T Consensus 554 aHFKiPky~vf~~~FPlT~tGKIqKFeir~~~k~~ 588 (596)
T KOG1177|consen 554 AHFKIPKYFVFVDEFPLTTTGKIQKFEIREMSKGH 588 (596)
T ss_pred ccccCCcEEEEeccCcccccccchhHHHHHHHHhh
Confidence 00123456788888887766 57888888743
No 330
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=21.51 E-value=8.3e+02 Score=24.66 Aligned_cols=56 Identities=11% Similarity=0.125 Sum_probs=31.3
Q ss_pred eEEEeCCCCCCcHHHHHHHHhccC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 005357 53 KLFVGSVPKTAREEDIRPLFEEHG-NVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALH 114 (700)
Q Consensus 53 tLfVgnLP~~vteedL~elF~~~G-~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~ 114 (700)
-|+|.....+...+.|+++.+ + +|+-+. ++. .....+.+|.+++.+.++.+.+.|.
T Consensus 58 giIi~~~~~~~~~~~l~~~~~--~ipvV~~~--~~~--~~~~~~~~V~~D~~~~g~~a~~~l~ 114 (271)
T cd06314 58 GIAISPIDPKAVIPALNKAAA--GIKLITTD--SDA--PDSGRYVYIGTDNYAAGRTAGEIMK 114 (271)
T ss_pred EEEEecCChhHhHHHHHHHhc--CCCEEEec--CCC--CccceeEEEccChHHHHHHHHHHHH
Confidence 345544433333455565543 4 333332 111 1123478999999999999888773
No 331
>PF14893 PNMA: PNMA
Probab=21.48 E-value=87 Score=34.34 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=22.9
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhc
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEE 74 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~ 74 (700)
-+..+.|.|.+||.+++++||++.+..
T Consensus 15 ~~~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 15 VDPQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred cChhhhheeecCCCCCCHHHHHHHHHH
Confidence 356788999999999999999988753
No 332
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.45 E-value=1.9e+02 Score=28.45 Aligned_cols=47 Identities=17% Similarity=0.171 Sum_probs=37.4
Q ss_pred CCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhc
Q 005357 149 SLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALN 204 (700)
Q Consensus 149 nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Ln 204 (700)
+|+..+.++.|.++.+-||-|.+. .+ . .-.+-|-+.+...+|++.+.
T Consensus 118 ~l~~~i~~erl~ei~E~~gvI~Ef---ee-~-----~~V~I~Gdke~Ik~aLKe~s 164 (169)
T PF09869_consen 118 KLKKPIQEERLQEISEWHGVIFEF---EE-D-----DKVVIEGDKERIKKALKEFS 164 (169)
T ss_pred ecCccchHHHHHHHHHHhceeEEe---cC-C-----cEEEEeccHHHHHHHHHHHH
Confidence 578889999999999999987665 12 1 24788899999999998764
No 333
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=21.39 E-value=5.1e+02 Score=21.99 Aligned_cols=57 Identities=12% Similarity=0.140 Sum_probs=37.9
Q ss_pred EEEeCCCCCCcHHHHHHHHhc-------cCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 005357 54 LFVGSVPKTAREEDIRPLFEE-------HGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112 (700)
Q Consensus 54 LfVgnLP~~vteedL~elF~~-------~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~ 112 (700)
|...+||..+|.++|.++..+ +..|.-++-..+. ...|-||+.+=.|+|.++++-+.
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~--d~~k~~Cly~Ap~~eaV~~~~~~ 66 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSE--DDGKIFCLYEAPDEEAVREHARR 66 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEec--CCCeEEEEEECCCHHHHHHHHHH
Confidence 567889888999998877654 3234444333332 23356888877898888887765
No 334
>PLN03138 Protein TOC75; Provisional
Probab=21.28 E-value=2.1e+02 Score=35.19 Aligned_cols=11 Identities=36% Similarity=0.501 Sum_probs=5.5
Q ss_pred cccHHHHHHHh
Q 005357 153 QATEKEVEEIF 163 (700)
Q Consensus 153 ~~teedL~~~F 163 (700)
.+++++|+++|
T Consensus 251 ~fs~~el~~~~ 261 (796)
T PLN03138 251 DMTDKEKMEYY 261 (796)
T ss_pred ccCHHHHHHHh
Confidence 34555555544
No 335
>PF14893 PNMA: PNMA
Probab=21.13 E-value=92 Score=34.15 Aligned_cols=75 Identities=21% Similarity=0.314 Sum_probs=44.6
Q ss_pred cceeeccCCCccccHHHHHHHhcC----CCceeEE-EEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccce
Q 005357 142 EYKLFVGSLNKQATEKEVEEIFSP----YGRVEDV-YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPL 216 (700)
Q Consensus 142 s~~LfV~nLp~~~teedL~~~F~~----fG~V~~v-~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L 216 (700)
.+.|.|.+||++++++||++.+.. .|...-. ++++.+.+ .-.++|+|.+.-+-...=..+ -|+|...
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~--~~aalve~~e~~n~~~iP~~i------~g~gg~W 89 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREEN--AKAALVEFAEDVNYSLIPREI------PGKGGPW 89 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcc--cceeeeecccccchhhCchhc------CCCCCce
Confidence 357999999999999999887643 4432211 22222222 337899996644333222222 3356778
Q ss_pred EEEecCCC
Q 005357 217 TVRFADPK 224 (700)
Q Consensus 217 ~V~~a~~k 224 (700)
+|-|..+.
T Consensus 90 ~Vv~~p~~ 97 (331)
T PF14893_consen 90 RVVFKPPA 97 (331)
T ss_pred EEEecCCC
Confidence 88777654
No 336
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=21.05 E-value=2.9e+02 Score=31.60 Aligned_cols=61 Identities=11% Similarity=0.258 Sum_probs=37.7
Q ss_pred CceEEEeCCCCCCcHHHHHHHHhc---cCCeeEEEEeecCCCCCcccEEEEE-eCCHHHHHHHHHHh
Q 005357 51 FAKLFVGSVPKTAREEDIRPLFEE---HGNVIEVALIKDKKTGQQQGCCFIK-YATSEEADRAIRAL 113 (700)
Q Consensus 51 ~~tLfVgnLP~~vteedL~elF~~---~G~V~~i~i~~d~~Tg~skG~aFVe-F~~~edA~~Ai~~L 113 (700)
..+|.|..||+.+..+++.+.+.. -+.+..|.-++|..+. .|..||. +....+++..++.|
T Consensus 225 ~~~i~ItElP~~~~~~~~~e~i~~l~~~~k~~~I~~~~D~s~~--~~vrivI~lk~~~~~~~~~~~L 289 (445)
T cd00187 225 RNTIEITELPYQVNKAKLKEKIAELVKDKKIEGISDVRDESDR--EGIRFVIELKRGAMAEVVLNGL 289 (445)
T ss_pred CceEEEEeCCCcccHHHHHHHHHHHHhcCCCcccceeeeccCC--CceEEEEEECCCccHHHHHHHH
Confidence 368999999999999888876643 2334444444554332 2566654 55555555555544
No 337
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=21.04 E-value=1e+02 Score=25.90 Aligned_cols=43 Identities=12% Similarity=0.218 Sum_probs=33.7
Q ss_pred HHHHHHHhccC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHH
Q 005357 66 EDIRPLFEEHG-NVIEVALIKDKKTGQQQGCCFIKYATSEEADR 108 (700)
Q Consensus 66 edL~elF~~~G-~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~ 108 (700)
++|++.|.++| +|..|.-+..++++..-..-||+.....+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~ 45 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE 45 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc
Confidence 46888999999 78888888888877777788888877655444
No 338
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=20.86 E-value=5.5e+02 Score=28.34 Aligned_cols=14 Identities=21% Similarity=0.105 Sum_probs=5.5
Q ss_pred EEEeCCCCCCcHHH
Q 005357 54 LFVGSVPKTAREED 67 (700)
Q Consensus 54 LfVgnLP~~vteed 67 (700)
|-+...|.++++-.
T Consensus 152 L~~~k~p~Nin~~~ 165 (465)
T KOG3973|consen 152 LNFPKQPGNINEWK 165 (465)
T ss_pred cCCCCCCCCchHHH
Confidence 33333344444433
No 339
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=20.79 E-value=2.3e+02 Score=32.92 Aligned_cols=49 Identities=12% Similarity=0.082 Sum_probs=36.9
Q ss_pred HHHHHHHhc----CCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhc
Q 005357 156 EKEVEEIFS----PYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALN 204 (700)
Q Consensus 156 eedL~~~F~----~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Ln 204 (700)
.-||..+|. .+|.|+++.|.....-..+...++.|.+.++|.+++..+.
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 346777775 5778998887666554455677899999999999988764
No 340
>PRK10905 cell division protein DamX; Validated
Probab=20.78 E-value=1.2e+02 Score=32.85 Aligned_cols=60 Identities=13% Similarity=0.068 Sum_probs=35.7
Q ss_pred ceeeccCCCccccHHHHHHHhcCCCceeEEEEeeC-CCCCccceE-EEEeCCHHHHHHHHHHhcCc
Q 005357 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCG-FVKYSHRDMALAAINALNGI 206 (700)
Q Consensus 143 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d-~~g~srG~a-FVeF~~~e~A~~Ai~~Lng~ 206 (700)
++|-|..+. +++.|+++..++| +....+... .+|+.|-.. +=.|.++++|++|++.|-..
T Consensus 248 YTLQL~A~S---s~~~l~~fakKlg-L~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa~ 309 (328)
T PRK10905 248 YTLQLSSSS---NYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPAD 309 (328)
T ss_pred eEEEEEecC---CHHHHHHHHHHcC-CCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCHH
Confidence 345554444 4577777777775 333333332 345444222 34689999999999987543
No 341
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=20.77 E-value=1.4e+02 Score=31.96 Aligned_cols=20 Identities=20% Similarity=0.468 Sum_probs=17.6
Q ss_pred EEEEeCCHHHHHHHHHHhcc
Q 005357 96 CFIKYATSEEADRAIRALHN 115 (700)
Q Consensus 96 aFVeF~~~edA~~Ai~~L~g 115 (700)
|||.|++.++|..|++.+..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~ 20 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLS 20 (325)
T ss_pred CEEEECCHHHHHHHHHHHhc
Confidence 79999999999999997643
No 342
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=20.55 E-value=6.8e+02 Score=26.65 Aligned_cols=139 Identities=14% Similarity=0.139 Sum_probs=61.7
Q ss_pred CCCcHHHHHHHHhccCCeeEEEEeecC----------CCCCcccEEEEEeCCHHHHHHHHHHhccccc-CCCccccceee
Q 005357 61 KTAREEDIRPLFEEHGNVIEVALIKDK----------KTGQQQGCCFIKYATSEEADRAIRALHNQHT-LPGGVGPIQVR 129 (700)
Q Consensus 61 ~~vteedL~elF~~~G~V~~i~i~~d~----------~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~-~~g~~~~l~V~ 129 (700)
...++++|.+.+... -|..+.|. +.| .+..+ .-|-+.+||+++++.+....- +.++.+.+.|.
T Consensus 61 ~AL~~~~V~~kL~~V----PVF~itn~~G~p~l~~~~~~~-~~~v~-~~F~s~~dA~~~L~~lk~~~p~~~~~~kV~pvs 134 (274)
T PF04278_consen 61 LALPEEEVEEKLAGV----PVFTITNSQGEPVLVSGPDQG-GKSVG-LFFFSQQDAEAFLAQLKKSNPELASGAKVVPVS 134 (274)
T ss_dssp ----HHHHHHHHTTS----EEEEEE-TT--B-----TTS---SEEE-EEES-HHHHHHHHHHHHH-SSHHHTT-EEEEEE
T ss_pred ccCCHHHHHHHhcCc----eEEEEECCCCCEEEeccCCCC-CceEE-EEEecHHHHHHHHHHHhhhCccccCceEEEEec
Confidence 346788888888743 22222222 111 23333 457799999999998864332 12222223333
Q ss_pred ccccccc--ccCcccceeeccCCCccccHHHHHHHhcCCC-------ceeEEEEeeC----C-CCCccceEEEEeCCHHH
Q 005357 130 YADGERE--RLGAVEYKLFVGSLNKQATEKEVEEIFSPYG-------RVEDVYLMRD----E-LKQSRGCGFVKYSHRDM 195 (700)
Q Consensus 130 ~a~~~~~--~~~~~s~~LfV~nLp~~~teedL~~~F~~fG-------~V~~v~I~~d----~-~g~srG~aFVeF~~~e~ 195 (700)
..+..+. ........|+..=+|.....+.-+++++.-| .|- |.+.+. - ..+...-..-.|-+.++
T Consensus 135 L~~vY~l~~~~~~k~~~~~F~~vP~~~qV~~A~~ll~~~g~~~~~f~GVP-vF~~~~~~~~Lti~~~~~~~iPlFF~ked 213 (274)
T PF04278_consen 135 LGKVYQLAQENKKKPEGLQFRFVPDPKQVEAALELLKKQGQKVKQFQGVP-VFYAEGGKGYLTIKQDNKRIIPLFFDKED 213 (274)
T ss_dssp HHHHHHHHHHTTT-TT-EEEEEE--HHHHHHHHHHHHTTT---S---S-E-EEEEESST-B-EETTTTEEEEEEESSHHH
T ss_pred HHHHHHHHHHhhcCCcCceEEEcCCHHHHHHHHHHHHhcCCCcccCCCeE-EEEEcCCCceEEEeeCCeEEEEEEecHHH
Confidence 3221111 0111234455555565544444445543322 221 222222 0 01112345677888999
Q ss_pred HHHHHHHhcCc
Q 005357 196 ALAAINALNGI 206 (700)
Q Consensus 196 A~~Ai~~Lng~ 206 (700)
++++++.+...
T Consensus 214 L~~~l~k~~kq 224 (274)
T PF04278_consen 214 LQAALEKAKKQ 224 (274)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHHHh
Confidence 99999987544
No 343
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=20.33 E-value=2.5e+02 Score=28.43 Aligned_cols=65 Identities=20% Similarity=0.185 Sum_probs=36.1
Q ss_pred EEEEeCCHHHHHHHHHHhcccccCCCcccc-ceeecccccccccCcccceeeccCCCccccHHHHHHHhcCCCc
Q 005357 96 CFIKYATSEEADRAIRALHNQHTLPGGVGP-IQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGR 168 (700)
Q Consensus 96 aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~-l~V~~a~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~ 168 (700)
.|=+=.|.++|.+.++.|.|+.. .... +.+-. ..+........++|++++| ++++|..+.+....
T Consensus 80 ilgKP~~~~eA~~~L~~lSG~~h---~v~T~v~li~-~~~~~~~~~~~t~V~F~~l----s~~~I~~Yv~sgep 145 (193)
T COG0424 80 ILGKPKDEEEAREMLRKLSGRTH---QVYTGVALID-PGKRVQSEVEVTKVRFRTL----SDEEIEAYVASGEP 145 (193)
T ss_pred EecCCCCHHHHHHHHHHhcCCeE---EEEEEEEEEE-CCCeEEEEEEEEEEEEccC----CHHHHHHHHHcCCc
Confidence 34445688888888888866432 1111 11111 1112333455667888765 56778877765543
No 344
>cd02568 PseudoU_synth_PUS1_PUS2 PseudoU_synth_PUS1_PUS2: Pseudouridine synthase, PUS1/ PUS2 like. This group consists of eukaryotic pseudouridine synthases similar to Saccharomyces cerevisiae Pus1p, S. cerevisiae Pus2p, Caenorhabditis elegans Pus1p and human PUS1. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. S. cerevisiae Pus1p catalyzes the formation of psi34 and psi36 in the intron-containing tRNAIle, psi35 in the intron-containing tRNATyr, psi27 and/or psi28 in several yeast cytoplasmic tRNAs and, psi44 in U2 small nuclear RNA (U2 snRNA). The presence of the intron is required for the formation of psi 34, 35 and 36. In addition S. cerevisiae PUS1 makes are psi 26, 65 and 67. C. elegans Pus1p does not modify psi44 in U2 snRNA. Mouse Pus1p makes psi27/28 in pre- tRNASer , tRNAVal and tRNAIle, psi 34/36 in tRNAIle and, psi 32 and potentially 67 in tRNAVal. Psi44 in U
Probab=20.18 E-value=1.6e+02 Score=30.66 Aligned_cols=54 Identities=9% Similarity=0.226 Sum_probs=32.2
Q ss_pred CCcHHHHHHHHhccCCe--------eEEEEeecCCC--CCcccEEEEEeCCHH--H-----HHHHHHHhcc
Q 005357 62 TAREEDIRPLFEEHGNV--------IEVALIKDKKT--GQQQGCCFIKYATSE--E-----ADRAIRALHN 115 (700)
Q Consensus 62 ~vteedL~elF~~~G~V--------~~i~i~~d~~T--g~skG~aFVeF~~~e--d-----A~~Ai~~L~g 115 (700)
.+-+++|++.+++.+.| ..+++...-+| |.+--.=.|.|.... + .++.+..||.
T Consensus 21 ~TVq~~le~aL~~~~~~~~~~~~~~~~~~~~~agRTD~GVHA~~qv~~~~~~~~~~~~~~~~~~~~~~lN~ 91 (245)
T cd02568 21 KTIEGELERALVKAGAISESNAGDPKKIGFSRAARTDKGVHAARNVVSLKVIIDDPEGLGIGEDLVEKLNS 91 (245)
T ss_pred CChHHHHHHHHHHcCCcCccccCChhhcceeeecccccchhheeeEEEEEEeccccccccchHHHHHHHHc
Confidence 46688999999998865 56777766555 444333344443221 1 4555666654
No 345
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=20.01 E-value=4e+02 Score=20.25 Aligned_cols=44 Identities=16% Similarity=0.399 Sum_probs=30.1
Q ss_pred cHHHHHHHHhccC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 005357 64 REEDIRPLFEEHG-NVIEVALIKDKKTGQQQGCCFIKYATSEEADRAI 110 (700)
Q Consensus 64 teedL~elF~~~G-~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai 110 (700)
.-.+|.++|.+.| .|..+.+.... ..++...+.+++.+.|.+++
T Consensus 11 ~l~~i~~~l~~~~inI~~~~~~~~~---~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 11 RLAEVTEILAEAGINIKAISIAETR---GEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred hHHHHHHHHHHcCCCEeeEEEEEcc---CCcEEEEEEECCHHHHHHHh
Confidence 3456777788776 67777765542 34567777888888877765
Done!