Query 005357
Match_columns 700
No_of_seqs 519 out of 2889
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 23:04:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005357.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005357hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmr_A Cugbp ELAV-like family 100.0 1.7E-33 5.7E-38 271.5 21.4 172 50-222 2-175 (175)
2 4f02_A Polyadenylate-binding p 100.0 2.3E-34 8E-39 289.7 14.5 171 49-226 13-183 (213)
3 1l3k_A Heterogeneous nuclear r 100.0 4.9E-32 1.7E-36 266.7 19.4 177 46-230 8-189 (196)
4 3md3_A Nuclear and cytoplasmic 100.0 1.3E-31 4.5E-36 255.7 19.7 165 52-223 1-166 (166)
5 2qfj_A FBP-interacting repress 100.0 2.4E-31 8.3E-36 265.7 21.3 172 49-226 26-207 (216)
6 1b7f_A Protein (SXL-lethal pro 100.0 2.7E-31 9.2E-36 254.7 19.7 166 50-221 2-168 (168)
7 1fxl_A Paraneoplastic encephal 100.0 5.7E-31 2E-35 251.5 20.7 164 50-221 1-167 (167)
8 2cjk_A Nuclear polyadenylated 100.0 7.3E-31 2.5E-35 251.7 13.8 164 50-224 2-166 (167)
9 1fje_B Nucleolin RBD12, protei 100.0 1.8E-30 6E-35 251.5 13.4 167 46-224 8-174 (175)
10 3smz_A Protein raver-1, ribonu 100.0 1E-28 3.4E-33 258.2 20.9 172 50-227 94-267 (284)
11 3pgw_A U1-A; protein-RNA compl 100.0 7.7E-29 2.6E-33 258.8 19.9 163 47-222 5-281 (282)
12 2yh0_A Splicing factor U2AF 65 100.0 8E-29 2.7E-33 244.0 17.3 164 50-226 3-196 (198)
13 2adc_A Polypyrimidine tract-bi 100.0 4E-28 1.4E-32 246.8 20.0 162 48-224 31-228 (229)
14 3tyt_A Heterogeneous nuclear r 100.0 1.7E-28 5.7E-33 246.4 16.2 163 50-221 3-204 (205)
15 2g4b_A Splicing factor U2AF 65 100.0 4.3E-28 1.5E-32 233.5 17.7 158 50-222 3-172 (172)
16 3sde_A Paraspeckle component 1 100.0 1.4E-27 4.9E-32 247.6 20.3 164 47-227 18-182 (261)
17 1qm9_A Polypyrimidine tract-bi 100.0 5E-28 1.7E-32 239.4 15.5 160 50-224 2-197 (198)
18 2ghp_A U4/U6 snRNA-associated 99.9 7.8E-28 2.7E-32 252.5 15.9 168 49-224 115-291 (292)
19 2ghp_A U4/U6 snRNA-associated 99.9 5.7E-27 1.9E-31 245.9 16.4 165 45-227 35-200 (292)
20 3smz_A Protein raver-1, ribonu 99.9 2.1E-26 7E-31 240.7 19.5 157 49-226 20-177 (284)
21 2kn4_A Immunoglobulin G-bindin 99.9 1.2E-21 4.3E-26 187.3 14.4 144 80-228 2-154 (158)
22 4f25_A Polyadenylate-binding p 99.8 1.1E-19 3.8E-24 165.2 10.1 104 50-158 4-113 (115)
23 2i2y_A Fusion protein consists 99.8 1.7E-19 5.9E-24 171.2 11.1 125 90-225 10-149 (150)
24 4fxv_A ELAV-like protein 1; RN 99.7 5.7E-18 2E-22 150.0 10.7 81 49-132 17-97 (99)
25 3pgw_S U1-70K; protein-RNA com 99.7 2E-18 7E-23 191.8 9.1 158 67-227 8-185 (437)
26 2dgp_A Bruno-like 4, RNA bindi 99.7 1.3E-17 4.3E-22 148.6 11.6 91 47-137 9-99 (106)
27 2dnh_A Bruno-like 5, RNA bindi 99.7 2.9E-17 1E-21 146.0 13.6 90 47-137 11-100 (105)
28 2cpz_A CUG triplet repeat RNA- 99.7 2.8E-17 9.4E-22 148.8 13.2 87 48-137 22-108 (115)
29 2lea_A Serine/arginine-rich sp 99.7 4.8E-18 1.6E-22 159.0 8.4 126 95-229 6-132 (135)
30 3s8s_A Histone-lysine N-methyl 99.7 1.9E-17 6.4E-22 149.6 10.7 84 49-135 4-87 (110)
31 2lxi_A RNA-binding protein 10; 99.7 5.8E-18 2E-22 147.5 6.2 84 51-136 1-85 (91)
32 1x5u_A Splicing factor 3B subu 99.7 5.4E-17 1.8E-21 144.3 12.3 89 46-137 10-98 (105)
33 2dgo_A Cytotoxic granule-assoc 99.7 6E-17 2.1E-21 146.5 12.8 91 44-137 8-98 (115)
34 2cq0_A Eukaryotic translation 99.7 4.1E-17 1.4E-21 144.7 11.4 89 46-137 10-98 (103)
35 2cqc_A Arginine/serine-rich sp 99.7 5.3E-17 1.8E-21 141.4 11.6 84 46-132 10-93 (95)
36 3lqv_A PRE-mRNA branch site pr 99.7 3.3E-17 1.1E-21 148.2 10.7 105 48-168 5-109 (115)
37 2e5h_A Zinc finger CCHC-type a 99.7 4.4E-17 1.5E-21 141.8 11.0 82 48-132 13-94 (94)
38 4fxv_A ELAV-like protein 1; RN 99.7 3.2E-17 1.1E-21 145.2 9.9 79 142-223 19-98 (99)
39 2d9p_A Polyadenylate-binding p 99.7 9.5E-17 3.3E-21 142.3 12.2 89 44-137 8-96 (103)
40 2kxn_B Transformer-2 protein h 99.7 6E-17 2E-21 150.5 11.2 89 44-135 39-127 (129)
41 2do4_A Squamous cell carcinoma 99.7 1.1E-16 3.8E-21 141.0 12.5 86 46-135 12-97 (100)
42 1x4h_A RNA-binding protein 28; 99.7 9.7E-17 3.3E-21 143.9 12.3 88 47-137 11-104 (111)
43 2cph_A RNA binding motif prote 99.7 1.1E-16 3.7E-21 142.7 12.4 89 46-137 10-100 (107)
44 2dnm_A SRP46 splicing factor; 99.7 6.9E-17 2.4E-21 143.2 10.9 88 47-137 9-96 (103)
45 1u6f_A Tcubp1, RNA-binding pro 99.7 7.1E-17 2.4E-21 150.9 11.4 88 139-229 39-127 (139)
46 2dgs_A DAZ-associated protein 99.7 1.4E-16 4.6E-21 140.3 12.4 86 48-137 7-92 (99)
47 1h2v_Z 20 kDa nuclear CAP bind 99.7 6.6E-17 2.2E-21 154.4 11.1 87 139-228 36-123 (156)
48 1x5s_A Cold-inducible RNA-bind 99.7 9.6E-17 3.3E-21 141.9 11.4 86 48-136 9-94 (102)
49 2dnh_A Bruno-like 5, RNA bindi 99.7 1.4E-16 4.8E-21 141.6 12.5 91 139-229 12-102 (105)
50 2dnz_A Probable RNA-binding pr 99.7 1.4E-16 4.7E-21 138.9 11.9 86 49-137 3-88 (95)
51 2lkz_A RNA-binding protein 5; 99.7 2.8E-17 9.5E-22 144.7 7.2 84 48-133 6-94 (95)
52 2dnz_A Probable RNA-binding pr 99.7 1.8E-16 6.2E-21 138.1 12.3 85 140-227 3-88 (95)
53 2dng_A Eukaryotic translation 99.7 1.5E-16 5.3E-21 141.1 11.9 87 46-137 10-96 (103)
54 2cpe_A RNA-binding protein EWS 99.7 1.2E-16 4E-21 144.1 11.2 90 45-137 9-106 (113)
55 2d9p_A Polyadenylate-binding p 99.7 1.8E-16 6.2E-21 140.5 12.2 87 139-229 12-98 (103)
56 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.1E-16 3.6E-21 137.2 10.3 82 49-133 4-85 (87)
57 2khc_A Testis-specific RNP-typ 99.7 1.3E-16 4.3E-21 145.0 11.2 84 45-131 34-117 (118)
58 2cqd_A RNA-binding region cont 99.7 1.4E-16 4.7E-21 144.5 11.4 85 46-134 12-96 (116)
59 1whw_A Hypothetical protein ri 99.7 1.2E-16 4.1E-21 140.5 10.5 87 48-137 5-91 (99)
60 2cqb_A Peptidyl-prolyl CIS-tra 99.7 7.9E-17 2.7E-21 142.4 9.4 87 48-137 9-95 (102)
61 2dh8_A DAZ-associated protein 99.7 1.1E-16 3.9E-21 142.3 10.2 87 47-137 12-98 (105)
62 2div_A TRNA selenocysteine ass 99.7 1.5E-16 5.1E-21 139.9 10.8 87 48-135 6-95 (99)
63 2fy1_A RNA-binding motif prote 99.7 2.5E-16 8.4E-21 143.4 12.5 85 140-227 5-89 (116)
64 1p27_B RNA-binding protein 8A; 99.7 1.9E-16 6.4E-21 141.0 11.4 84 48-134 20-103 (106)
65 1rk8_A CG8781-PA, CG8781-PA pr 99.7 8.6E-17 2.9E-21 155.3 9.8 128 98-229 11-157 (165)
66 1wi8_A EIF-4B, eukaryotic tran 99.7 2E-16 6.8E-21 140.6 11.4 87 46-137 10-97 (104)
67 2la6_A RNA-binding protein FUS 99.7 2.7E-16 9.1E-21 138.5 12.0 81 48-131 10-98 (99)
68 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.4E-16 4.9E-21 135.8 9.9 82 48-132 4-85 (85)
69 2cpz_A CUG triplet repeat RNA- 99.7 1.9E-16 6.6E-21 143.2 11.4 88 139-229 22-110 (115)
70 1whw_A Hypothetical protein ri 99.7 2E-16 6.9E-21 139.0 11.1 85 140-227 6-91 (99)
71 3md1_A Nuclear and cytoplasmic 99.7 1.9E-16 6.6E-21 134.3 10.7 81 51-134 1-81 (83)
72 2do0_A HnRNP M, heterogeneous 99.7 3.2E-16 1.1E-20 141.4 12.6 84 48-135 12-95 (114)
73 2dgp_A Bruno-like 4, RNA bindi 99.7 1.5E-16 5.2E-21 141.6 10.2 90 139-228 10-100 (106)
74 2cqi_A Nucleolysin TIAR; RNA r 99.7 3E-16 1E-20 139.0 12.1 87 46-137 10-96 (103)
75 3p5t_L Cleavage and polyadenyl 99.7 8.1E-17 2.8E-21 139.5 8.1 81 52-135 2-84 (90)
76 2x1f_A MRNA 3'-END-processing 99.7 1.7E-16 5.7E-21 139.0 10.2 84 50-136 1-84 (96)
77 1x5t_A Splicing factor 3B subu 99.7 1.3E-16 4.3E-21 139.4 9.4 85 141-228 4-90 (96)
78 2do0_A HnRNP M, heterogeneous 99.7 5.2E-16 1.8E-20 139.9 13.7 86 139-227 12-97 (114)
79 1u6f_A Tcubp1, RNA-binding pro 99.7 1.8E-16 6.2E-21 148.2 11.0 89 46-137 37-125 (139)
80 2do4_A Squamous cell carcinoma 99.7 3E-16 1E-20 138.3 11.6 85 139-226 14-98 (100)
81 3ns6_A Eukaryotic translation 99.7 8.1E-17 2.8E-21 142.6 7.8 84 49-134 4-93 (100)
82 2hgn_A Heterogeneous nuclear r 99.7 3E-17 1E-21 154.5 5.3 126 93-227 1-126 (139)
83 2hvz_A Splicing factor, argini 99.7 1.7E-16 5.9E-21 140.1 9.8 93 52-152 1-101 (101)
84 2dgo_A Cytotoxic granule-assoc 99.7 6.5E-16 2.2E-20 139.7 13.9 88 139-229 12-100 (115)
85 1x5u_A Splicing factor 3B subu 99.7 3.3E-16 1.1E-20 139.2 11.6 87 139-228 12-99 (105)
86 2dgs_A DAZ-associated protein 99.7 3.9E-16 1.3E-20 137.3 11.9 86 140-229 8-94 (99)
87 2ywk_A Putative RNA-binding pr 99.7 2.1E-16 7E-21 137.8 10.0 82 47-132 12-93 (95)
88 2f3j_A RNA and export factor b 99.7 8.7E-16 3E-20 150.4 15.6 84 47-134 84-167 (177)
89 2cq3_A RNA-binding protein 9; 99.7 5.3E-16 1.8E-20 137.4 12.8 87 46-137 10-96 (103)
90 1x5t_A Splicing factor 3B subu 99.7 1.5E-16 5E-21 139.0 9.0 86 49-137 3-89 (96)
91 2dhg_A TRNA selenocysteine ass 99.7 2E-16 6.8E-21 140.3 10.0 87 140-229 7-95 (104)
92 3q2s_C Cleavage and polyadenyl 99.7 2.4E-17 8.3E-22 167.9 4.6 81 141-224 67-150 (229)
93 2cq0_A Eukaryotic translation 99.7 3.5E-16 1.2E-20 138.7 11.4 87 139-228 12-99 (103)
94 2cpf_A RNA binding motif prote 99.7 2.3E-16 7.7E-21 138.5 9.8 86 49-137 3-91 (98)
95 2jrs_A RNA-binding protein 39; 99.7 4.5E-16 1.5E-20 139.8 12.0 84 48-134 23-106 (108)
96 1x4e_A RNA binding motif, sing 99.7 1.6E-16 5.5E-21 135.7 8.5 81 49-132 3-83 (85)
97 2dhg_A TRNA selenocysteine ass 99.7 4.6E-16 1.6E-20 138.0 11.8 86 48-136 6-92 (104)
98 2cqp_A RNA-binding protein 12; 99.7 1.7E-16 5.8E-21 139.3 8.9 83 48-133 12-94 (98)
99 2cph_A RNA binding motif prote 99.7 4.7E-16 1.6E-20 138.5 11.8 87 139-228 12-101 (107)
100 2cqd_A RNA-binding region cont 99.7 5.2E-16 1.8E-20 140.6 12.3 85 139-227 14-99 (116)
101 4f25_A Polyadenylate-binding p 99.7 2.2E-16 7.4E-21 143.4 9.8 83 142-228 5-87 (115)
102 2cqb_A Peptidyl-prolyl CIS-tra 99.7 2.3E-16 7.9E-21 139.4 9.7 87 140-229 10-97 (102)
103 3s8s_A Histone-lysine N-methyl 99.7 3.2E-16 1.1E-20 141.5 10.8 82 141-225 5-87 (110)
104 1oo0_B CG8781-PA, drosophila Y 99.7 2.8E-16 9.7E-21 140.9 10.1 86 47-135 22-107 (110)
105 2cq3_A RNA-binding protein 9; 99.7 7.4E-16 2.5E-20 136.5 12.6 87 139-229 12-98 (103)
106 1x5o_A RNA binding motif, sing 99.7 1E-15 3.5E-20 138.1 13.8 85 47-132 21-110 (114)
107 2dnm_A SRP46 splicing factor; 99.7 3.6E-16 1.2E-20 138.5 10.6 87 140-229 11-98 (103)
108 3ex7_B RNA-binding protein 8A; 99.7 2.6E-16 8.7E-21 144.7 9.9 88 139-229 19-107 (126)
109 1x4a_A Splicing factor, argini 99.7 1.1E-15 3.6E-20 137.0 13.6 84 48-137 19-102 (109)
110 2m2b_A RNA-binding protein 10; 99.7 2E-16 6.9E-21 146.8 9.2 86 48-136 20-110 (131)
111 2fy1_A RNA-binding motif prote 99.6 4.9E-16 1.7E-20 141.4 11.4 85 47-135 3-87 (116)
112 1wi8_A EIF-4B, eukaryotic tran 99.6 5.7E-16 1.9E-20 137.6 11.5 85 139-228 12-98 (104)
113 1p1t_A Cleavage stimulation fa 99.6 1.4E-16 5E-21 141.1 7.6 86 48-136 5-90 (104)
114 2cq4_A RNA binding motif prote 99.6 1.3E-16 4.5E-21 144.1 7.2 85 48-136 22-106 (114)
115 1x5s_A Cold-inducible RNA-bind 99.6 2.9E-16 9.8E-21 138.8 9.3 86 140-228 10-96 (102)
116 2cpf_A RNA binding motif prote 99.6 5E-16 1.7E-20 136.2 10.4 85 141-228 4-92 (98)
117 1x4a_A Splicing factor, argini 99.6 7.9E-16 2.7E-20 137.9 11.9 84 139-227 19-102 (109)
118 2cqi_A Nucleolysin TIAR; RNA r 99.6 7.3E-16 2.5E-20 136.5 11.5 87 139-229 12-98 (103)
119 2lxi_A RNA-binding protein 10; 99.6 9.2E-17 3.1E-21 139.9 5.5 83 142-226 1-85 (91)
120 3md1_A Nuclear and cytoplasmic 99.6 6.7E-16 2.3E-20 131.0 10.6 81 142-225 1-82 (83)
121 1x4h_A RNA-binding protein 28; 99.6 8E-16 2.7E-20 137.9 11.7 88 139-229 12-106 (111)
122 2cqg_A TDP-43, TAR DNA-binding 99.6 1.1E-15 3.8E-20 135.4 12.4 87 45-136 9-95 (103)
123 2ek1_A RNA-binding protein 12; 99.6 1.7E-16 5.9E-21 138.2 7.0 81 49-132 13-93 (95)
124 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 8.1E-16 2.8E-20 143.4 11.5 83 46-131 58-140 (140)
125 3bs9_A Nucleolysin TIA-1 isofo 99.6 6.1E-16 2.1E-20 132.4 9.7 81 141-224 5-86 (87)
126 2lea_A Serine/arginine-rich sp 99.6 3E-16 1E-20 146.8 8.5 87 48-137 44-130 (135)
127 3n9u_C Cleavage and polyadenyl 99.6 5.2E-16 1.8E-20 148.9 10.1 82 49-133 53-136 (156)
128 3ex7_B RNA-binding protein 8A; 99.6 7.7E-16 2.6E-20 141.5 10.8 87 46-135 17-103 (126)
129 2dng_A Eukaryotic translation 99.6 1.2E-15 4.1E-20 135.2 11.7 85 139-228 12-97 (103)
130 2dgv_A HnRNP M, heterogeneous 99.6 1.2E-15 4.2E-20 132.0 11.4 83 48-135 5-87 (92)
131 1h2v_Z 20 kDa nuclear CAP bind 99.6 9E-16 3.1E-20 146.5 11.4 87 46-135 34-120 (156)
132 2cpe_A RNA-binding protein EWS 99.6 7.5E-16 2.6E-20 138.8 10.3 87 139-228 12-107 (113)
133 3ulh_A THO complex subunit 4; 99.6 1E-15 3.4E-20 136.5 10.9 82 47-132 25-106 (107)
134 1wel_A RNA-binding protein 12; 99.6 3.3E-16 1.1E-20 144.0 7.9 82 48-133 22-103 (124)
135 1x4c_A Splicing factor, argini 99.6 1.1E-15 3.8E-20 136.9 11.2 81 140-229 13-98 (108)
136 3s7r_A Heterogeneous nuclear r 99.6 7.2E-16 2.5E-20 132.2 9.5 81 47-131 7-87 (87)
137 4a8x_A RNA-binding protein wit 99.6 5.5E-16 1.9E-20 132.9 8.5 82 50-134 3-85 (88)
138 1wg5_A Heterogeneous nuclear r 99.6 1.2E-15 4.2E-20 135.8 11.0 81 48-133 12-93 (104)
139 2lkz_A RNA-binding protein 5; 99.6 2.8E-16 9.6E-21 138.3 6.7 82 142-223 9-94 (95)
140 2rs2_A Musashi-1, RNA-binding 99.6 5.8E-16 2E-20 139.3 8.8 86 46-135 20-105 (109)
141 3ucg_A Polyadenylate-binding p 99.6 8.4E-16 2.9E-20 132.1 9.5 81 50-134 5-85 (89)
142 2ywk_A Putative RNA-binding pr 99.6 8.9E-16 3E-20 133.7 9.7 82 139-223 13-94 (95)
143 1sjq_A Polypyrimidine tract-bi 99.6 9.1E-16 3.1E-20 137.3 9.9 83 47-137 12-95 (105)
144 2dgv_A HnRNP M, heterogeneous 99.6 1.2E-15 4.2E-20 132.0 10.4 84 140-227 6-89 (92)
145 2cpy_A RNA-binding protein 12; 99.6 4.1E-16 1.4E-20 141.3 7.4 83 47-134 11-94 (114)
146 1p27_B RNA-binding protein 8A; 99.6 1.2E-15 4.1E-20 135.7 10.2 85 139-226 20-105 (106)
147 2x1f_A MRNA 3'-END-processing 99.6 1.2E-15 3.9E-20 133.6 9.9 81 142-225 2-83 (96)
148 2dgu_A Heterogeneous nuclear r 99.6 1.8E-15 6.1E-20 134.3 11.2 82 140-231 9-90 (103)
149 1s79_A Lupus LA protein; RRM, 99.6 1.1E-15 3.7E-20 136.4 9.7 82 47-133 7-88 (103)
150 2dis_A Unnamed protein product 99.6 1.2E-15 4.2E-20 136.4 10.1 86 49-136 6-94 (109)
151 2cqc_A Arginine/serine-rich sp 99.6 1.8E-15 6.2E-20 131.6 10.9 82 139-223 12-94 (95)
152 2fc9_A NCL protein; structure 99.6 1.7E-15 5.8E-20 133.7 10.8 83 139-227 12-94 (101)
153 3mdf_A Peptidyl-prolyl CIS-tra 99.6 9.6E-16 3.3E-20 130.6 8.8 80 140-222 5-85 (85)
154 2kt5_A RNA and export factor-b 99.6 2.1E-15 7.3E-20 138.3 11.7 85 47-135 31-115 (124)
155 1wex_A Hypothetical protein (r 99.6 2.9E-15 9.8E-20 134.0 12.2 84 45-136 9-93 (104)
156 2cpi_A CCR4-NOT transcription 99.6 9E-16 3.1E-20 138.3 8.9 87 46-135 10-102 (111)
157 2kxn_B Transformer-2 protein h 99.6 1.3E-15 4.5E-20 141.4 10.2 85 139-226 43-128 (129)
158 2mss_A Protein (musashi1); RNA 99.6 6.8E-16 2.3E-20 128.6 7.5 75 53-131 1-75 (75)
159 1wez_A HnRNP H', FTP-3, hetero 99.6 1.2E-15 4E-20 135.9 9.2 80 48-133 12-91 (102)
160 2dh8_A DAZ-associated protein 99.6 1.3E-15 4.4E-20 135.4 9.5 86 139-228 13-99 (105)
161 1uaw_A Mouse-musashi-1; RNP-ty 99.6 5.4E-16 1.8E-20 129.6 6.5 76 52-131 1-76 (77)
162 3p5t_L Cleavage and polyadenyl 99.6 4.6E-16 1.6E-20 134.8 6.2 81 143-226 2-85 (90)
163 2e5h_A Zinc finger CCHC-type a 99.6 2.2E-15 7.4E-20 131.0 10.5 81 139-222 13-94 (94)
164 1x4b_A Heterogeneous nuclear r 99.6 1.1E-15 3.7E-20 138.5 8.9 85 140-228 25-110 (116)
165 2cq1_A PTB-like protein L; RRM 99.6 2.6E-15 8.8E-20 133.6 11.1 85 45-137 9-94 (101)
166 1oo0_B CG8781-PA, drosophila Y 99.6 1.5E-15 5.2E-20 136.1 9.7 86 139-227 23-109 (110)
167 1x4d_A Matrin 3; structural ge 99.6 1.4E-15 4.6E-20 135.7 9.0 79 139-225 12-93 (102)
168 2dnq_A RNA-binding protein 4B; 99.6 3.4E-15 1.1E-19 129.1 11.2 79 140-228 6-84 (90)
169 2dgx_A KIAA0430 protein; RRM d 99.6 1.8E-15 6.1E-20 132.7 9.5 81 141-226 8-92 (96)
170 1x4b_A Heterogeneous nuclear r 99.6 1.4E-15 4.8E-20 137.8 9.2 86 48-137 24-109 (116)
171 2jrs_A RNA-binding protein 39; 99.6 2.2E-15 7.7E-20 135.3 10.4 84 139-225 23-107 (108)
172 2cpi_A CCR4-NOT transcription 99.6 1.9E-15 6.6E-20 136.2 10.0 83 140-225 13-102 (111)
173 4a8x_A RNA-binding protein wit 99.6 1.5E-15 5E-20 130.1 8.8 83 141-226 3-87 (88)
174 3ulh_A THO complex subunit 4; 99.6 2.2E-15 7.5E-20 134.3 10.2 81 139-222 26-106 (107)
175 1x4d_A Matrin 3; structural ge 99.6 2.1E-15 7.3E-20 134.4 10.0 81 47-135 11-93 (102)
176 2dgx_A KIAA0430 protein; RRM d 99.6 2.1E-15 7.2E-20 132.3 9.8 81 49-135 7-91 (96)
177 2cq1_A PTB-like protein L; RRM 99.6 4.1E-15 1.4E-19 132.3 11.7 82 139-228 12-95 (101)
178 2j76_E EIF-4B, EIF4B, eukaryot 99.6 7.8E-16 2.7E-20 136.0 7.0 82 48-134 16-98 (100)
179 1sjq_A Polypyrimidine tract-bi 99.6 1.1E-15 3.6E-20 136.9 7.9 82 140-229 14-97 (105)
180 2dgw_A Probable RNA-binding pr 99.6 2.8E-15 9.6E-20 129.7 10.4 81 48-134 7-87 (91)
181 2db1_A Heterogeneous nuclear r 99.6 9.9E-16 3.4E-20 139.8 7.8 80 48-132 14-96 (118)
182 2fc9_A NCL protein; structure 99.6 2.3E-15 7.8E-20 132.8 9.9 83 47-136 11-93 (101)
183 2ki2_A SS-DNA binding protein 99.6 5E-16 1.7E-20 134.0 5.5 80 52-135 2-81 (90)
184 2div_A TRNA selenocysteine ass 99.6 1.9E-15 6.4E-20 132.8 9.3 83 140-225 7-95 (99)
185 2jwn_A Embryonic polyadenylate 99.6 1.8E-15 6.2E-20 138.5 9.5 84 49-136 34-117 (124)
186 1why_A Hypothetical protein ri 99.6 5E-15 1.7E-19 129.8 11.9 81 48-135 14-94 (97)
187 2m2b_A RNA-binding protein 10; 99.6 9.2E-16 3.2E-20 142.4 7.6 85 139-227 20-111 (131)
188 2kn4_A Immunoglobulin G-bindin 99.6 2.2E-15 7.4E-20 143.8 10.3 87 48-137 67-153 (158)
189 1wez_A HnRNP H', FTP-3, hetero 99.6 1.8E-15 6.2E-20 134.6 9.0 81 140-225 13-93 (102)
190 2fc8_A NCL protein; structure 99.6 3.1E-15 1.1E-19 132.1 10.3 85 47-137 11-95 (102)
191 2la6_A RNA-binding protein FUS 99.6 3.4E-15 1.2E-19 131.4 10.5 81 139-222 10-99 (99)
192 2cqg_A TDP-43, TAR DNA-binding 99.6 5.4E-15 1.8E-19 130.9 11.8 85 139-228 12-97 (103)
193 2err_A Ataxin-2-binding protei 99.6 1.9E-15 6.5E-20 135.8 8.9 86 44-134 22-107 (109)
194 3ns6_A Eukaryotic translation 99.6 9.6E-16 3.3E-20 135.6 6.8 81 141-224 5-93 (100)
195 2khc_A Testis-specific RNP-typ 99.6 1.7E-15 5.8E-20 137.5 8.6 81 139-222 37-118 (118)
196 2ad9_A Polypyrimidine tract-bi 99.6 3.5E-15 1.2E-19 136.6 10.6 87 43-137 23-110 (119)
197 2cpj_A Non-POU domain-containi 99.6 4.8E-15 1.7E-19 130.4 10.8 81 46-135 10-90 (99)
198 1x4c_A Splicing factor, argini 99.6 6.2E-15 2.1E-19 132.1 11.6 80 49-136 13-95 (108)
199 2err_A Ataxin-2-binding protei 99.6 2E-15 6.7E-20 135.8 8.3 82 139-224 26-107 (109)
200 1fj7_A Nucleolin RBD1, protein 99.6 8.8E-16 3E-20 135.5 5.9 85 48-137 14-98 (101)
201 2ad9_A Polypyrimidine tract-bi 99.6 5.3E-15 1.8E-19 135.4 11.0 83 139-229 28-112 (119)
202 2dgw_A Probable RNA-binding pr 99.6 4.9E-15 1.7E-19 128.2 10.3 81 140-225 8-88 (91)
203 2hgl_A HNRPF protein, heteroge 99.6 1.7E-15 5.8E-20 142.1 7.8 80 48-132 41-123 (136)
204 2krb_A Eukaryotic translation 99.6 2.5E-15 8.6E-20 127.4 8.1 66 51-118 1-72 (81)
205 2dgt_A RNA-binding protein 30; 99.6 7E-15 2.4E-19 127.6 11.1 79 139-227 7-85 (92)
206 1why_A Hypothetical protein ri 99.6 5.1E-15 1.7E-19 129.7 10.3 79 140-226 15-95 (97)
207 3q2s_C Cleavage and polyadenyl 99.6 2.1E-15 7.3E-20 153.5 8.9 81 49-132 66-148 (229)
208 2kt5_A RNA and export factor-b 99.6 3.9E-15 1.3E-19 136.5 9.8 84 139-225 32-115 (124)
209 2fc8_A NCL protein; structure 99.6 6.9E-15 2.4E-19 129.9 11.0 83 139-227 12-95 (102)
210 3ucg_A Polyadenylate-binding p 99.6 3.9E-15 1.3E-19 127.9 9.1 80 141-224 5-85 (89)
211 2cpj_A Non-POU domain-containi 99.6 6E-15 2E-19 129.8 10.5 81 139-227 12-92 (99)
212 1wf1_A RNA-binding protein RAL 99.6 5.8E-15 2E-19 132.5 10.4 77 140-226 25-102 (110)
213 2jwn_A Embryonic polyadenylate 99.6 4E-15 1.4E-19 136.2 9.6 83 140-226 34-117 (124)
214 1s79_A Lupus LA protein; RRM, 99.6 3.9E-15 1.3E-19 132.8 9.1 80 140-223 9-88 (103)
215 1wg5_A Heterogeneous nuclear r 99.6 4.7E-15 1.6E-19 132.1 9.6 83 140-226 13-96 (104)
216 2e5j_A Methenyltetrahydrofolat 99.6 9.5E-15 3.2E-19 128.1 11.5 81 47-135 15-95 (97)
217 1wex_A Hypothetical protein (r 99.6 7.9E-15 2.7E-19 131.1 11.0 82 140-227 13-94 (104)
218 3r27_A HnRNP L, heterogeneous 99.6 4.1E-15 1.4E-19 131.9 8.9 81 139-225 18-98 (100)
219 2hgl_A HNRPF protein, heteroge 99.6 2E-15 7E-20 141.5 7.3 122 93-224 1-125 (136)
220 2dnq_A RNA-binding protein 4B; 99.6 1.3E-14 4.4E-19 125.4 11.8 79 48-137 5-83 (90)
221 2nlw_A Eukaryotic translation 99.6 4.4E-15 1.5E-19 132.5 9.1 83 48-134 12-100 (105)
222 2cq4_A RNA binding motif prote 99.6 8.8E-16 3E-20 138.7 4.6 84 140-227 23-107 (114)
223 2j76_E EIF-4B, EIF4B, eukaryot 99.6 2.3E-15 7.8E-20 133.0 7.1 82 139-225 16-99 (100)
224 1x5o_A RNA binding motif, sing 99.6 7.8E-15 2.7E-19 132.3 10.7 85 140-224 23-112 (114)
225 2rs2_A Musashi-1, RNA-binding 99.6 5.9E-15 2E-19 132.7 9.8 85 139-227 22-107 (109)
226 2dis_A Unnamed protein product 99.6 6E-15 2.1E-19 131.9 9.6 86 140-228 6-96 (109)
227 2cqp_A RNA-binding protein 12; 99.6 3E-15 1E-19 131.2 7.4 82 140-224 13-95 (98)
228 1p1t_A Cleavage stimulation fa 99.6 4.1E-15 1.4E-19 131.7 8.3 84 141-227 7-91 (104)
229 2lmi_A GRSF-1, G-rich sequence 99.6 2.3E-15 7.9E-20 134.8 6.7 81 48-133 8-91 (107)
230 3n9u_C Cleavage and polyadenyl 99.6 3.1E-15 1.1E-19 143.5 8.0 81 141-224 54-137 (156)
231 2hvz_A Splicing factor, argini 99.6 4.3E-15 1.5E-19 131.1 8.3 78 143-227 1-78 (101)
232 2cpx_A Hypothetical protein FL 99.6 2.1E-15 7E-20 136.2 6.3 88 47-137 21-108 (115)
233 2cpy_A RNA-binding protein 12; 99.6 2.5E-15 8.4E-20 136.1 6.7 83 139-225 12-95 (114)
234 1rk8_A CG8781-PA, CG8781-PA pr 99.6 8.6E-15 3E-19 141.2 10.9 87 47-136 68-154 (165)
235 1x4g_A Nucleolysin TIAR; struc 99.6 8E-15 2.8E-19 131.4 9.9 82 139-228 22-103 (109)
236 2dnn_A RNA-binding protein 12; 99.6 4.4E-15 1.5E-19 133.9 8.1 78 49-132 14-91 (109)
237 3r27_A HnRNP L, heterogeneous 99.6 8.4E-15 2.9E-19 129.9 9.7 83 44-134 14-97 (100)
238 2lcw_A RNA-binding protein FUS 99.3 2.8E-16 9.6E-21 142.5 0.0 85 140-227 5-98 (116)
239 2la4_A Nuclear and cytoplasmic 99.6 8.9E-15 3.1E-19 129.0 9.7 77 48-133 24-100 (101)
240 2cpx_A Hypothetical protein FL 99.6 7.8E-15 2.7E-19 132.4 9.4 85 139-229 22-110 (115)
241 1iqt_A AUF1, heterogeneous nuc 99.6 2.6E-15 8.7E-20 125.0 5.6 74 53-130 1-74 (75)
242 2a3j_A U1 small nuclear ribonu 99.6 8.8E-15 3E-19 135.6 9.9 83 48-136 26-112 (127)
243 2ek1_A RNA-binding protein 12; 99.6 3.4E-15 1.2E-19 130.0 6.7 80 141-223 14-94 (95)
244 2dnp_A RNA-binding protein 14; 99.6 1.1E-14 3.9E-19 125.7 9.9 79 139-227 6-84 (90)
245 1fjc_A Nucleolin RBD2, protein 99.5 5.9E-15 2E-19 128.9 7.8 82 139-227 13-94 (96)
246 2wbr_A GW182, gawky, LD47780P; 99.5 5.4E-15 1.9E-19 127.4 7.3 73 142-222 7-79 (89)
247 2cqh_A IGF-II mRNA-binding pro 99.5 5.6E-15 1.9E-19 128.3 7.5 80 140-228 6-87 (93)
248 2wbr_A GW182, gawky, LD47780P; 99.5 7.2E-15 2.5E-19 126.6 8.0 73 50-131 6-78 (89)
249 3s7r_A Heterogeneous nuclear r 99.5 1.4E-14 4.7E-19 124.2 9.6 79 139-221 8-87 (87)
250 2jvo_A Nucleolar protein 3; nu 99.5 1.2E-14 4.1E-19 130.6 9.6 79 139-227 28-106 (108)
251 1fj7_A Nucleolin RBD1, protein 99.5 1.7E-15 5.7E-20 133.7 3.7 84 140-228 15-99 (101)
252 1x4e_A RNA binding motif, sing 99.5 3.1E-15 1.1E-19 127.6 5.2 80 140-222 3-83 (85)
253 2mss_A Protein (musashi1); RNA 99.5 5.1E-15 1.7E-19 123.3 6.4 74 144-221 1-75 (75)
254 2cpd_A Apobec-1 stimulating pr 99.5 2.8E-14 9.6E-19 125.4 11.5 78 139-226 12-91 (99)
255 1x4g_A Nucleolysin TIAR; struc 99.5 1.7E-14 5.7E-19 129.3 10.1 81 48-137 22-102 (109)
256 2nlw_A Eukaryotic translation 99.5 8.6E-15 2.9E-19 130.6 8.2 82 140-225 13-101 (105)
257 2kvi_A Nuclear polyadenylated 99.5 1.1E-14 3.6E-19 127.6 8.5 78 140-227 8-86 (96)
258 3beg_B Splicing factor, argini 99.5 1.1E-14 3.6E-19 132.3 8.8 78 141-227 15-97 (115)
259 2la4_A Nuclear and cytoplasmic 99.5 7.7E-15 2.6E-19 129.4 7.6 76 141-224 26-101 (101)
260 1x4f_A Matrin 3; structural ge 99.5 8.7E-15 3E-19 132.6 8.0 81 139-227 22-105 (112)
261 2hgn_A Heterogeneous nuclear r 99.5 3.1E-15 1.1E-19 140.8 5.2 81 47-133 42-122 (139)
262 2lcw_A RNA-binding protein FUS 99.3 5.5E-16 1.9E-20 140.6 0.0 86 48-136 4-97 (116)
263 2cpd_A Apobec-1 stimulating pr 99.5 4.1E-14 1.4E-18 124.4 11.9 84 42-136 6-91 (99)
264 2db1_A Heterogeneous nuclear r 99.5 7.7E-15 2.6E-19 133.9 7.5 82 140-225 15-99 (118)
265 2jvr_A Nucleolar protein 3; RN 99.5 7E-15 2.4E-19 133.1 7.1 79 141-225 27-106 (111)
266 2hgm_A HNRPF protein, heteroge 99.5 8.3E-15 2.8E-19 135.5 7.5 80 47-132 38-119 (126)
267 2dha_A FLJ20171 protein; RRM d 99.5 2.1E-15 7.1E-20 139.0 3.4 79 48-131 20-102 (123)
268 2jvo_A Nucleolar protein 3; nu 99.5 1.9E-14 6.6E-19 129.2 9.4 80 46-136 26-105 (108)
269 2dnn_A RNA-binding protein 12; 99.5 1.6E-14 5.5E-19 130.3 8.8 80 140-224 14-93 (109)
270 2dnp_A RNA-binding protein 14; 99.5 3E-14 1E-18 123.1 10.0 79 48-137 6-84 (90)
271 2e5j_A Methenyltetrahydrofolat 99.5 1.8E-14 6E-19 126.4 8.7 80 140-226 17-96 (97)
272 1nu4_A U1A RNA binding domain; 99.5 8.7E-15 3E-19 127.9 6.7 83 48-136 5-91 (97)
273 2ytc_A PRE-mRNA-splicing facto 99.5 3.3E-14 1.1E-18 121.1 10.1 76 48-132 9-85 (85)
274 2ytc_A PRE-mRNA-splicing facto 99.5 2.1E-14 7.2E-19 122.3 8.8 76 139-222 9-85 (85)
275 1x5p_A Negative elongation fac 99.5 4.8E-14 1.7E-18 123.6 11.2 81 46-137 10-90 (97)
276 1uaw_A Mouse-musashi-1; RNP-ty 99.5 8.1E-15 2.8E-19 122.4 5.9 75 143-221 1-76 (77)
277 2dgt_A RNA-binding protein 30; 99.5 3.7E-14 1.3E-18 123.0 10.2 78 48-136 7-84 (92)
278 2jvr_A Nucleolar protein 3; RN 99.5 1.3E-14 4.5E-19 131.3 7.6 80 48-134 25-105 (111)
279 2e44_A Insulin-like growth fac 99.5 3.5E-14 1.2E-18 123.9 10.1 79 49-134 13-92 (96)
280 2a3j_A U1 small nuclear ribonu 99.5 1.9E-14 6.6E-19 133.3 8.7 82 140-226 27-112 (127)
281 2ki2_A SS-DNA binding protein 99.5 3.3E-15 1.1E-19 128.9 3.2 80 143-226 2-82 (90)
282 1x5p_A Negative elongation fac 99.5 6E-14 2E-18 123.0 11.4 80 139-228 12-91 (97)
283 2krb_A Eukaryotic translation 99.5 7.6E-15 2.6E-19 124.4 5.4 73 142-218 1-80 (81)
284 1wf1_A RNA-binding protein RAL 99.5 4.1E-14 1.4E-18 127.0 10.4 78 48-136 24-102 (110)
285 3nmr_A Cugbp ELAV-like family 99.5 4.4E-14 1.5E-18 135.3 11.2 84 48-132 92-175 (175)
286 2kvi_A Nuclear polyadenylated 99.5 3.6E-14 1.2E-18 124.3 9.6 78 47-135 6-84 (96)
287 2dgu_A Heterogeneous nuclear r 99.5 4.2E-14 1.4E-18 125.3 10.1 78 49-137 9-86 (103)
288 2xnq_A Nuclear polyadenylated 99.5 4E-14 1.4E-18 124.5 9.9 77 139-225 19-96 (97)
289 1x4f_A Matrin 3; structural ge 99.5 5.1E-14 1.8E-18 127.5 10.8 80 48-135 22-103 (112)
290 1fjc_A Nucleolin RBD2, protein 99.5 1.5E-14 5E-19 126.3 7.0 81 47-135 12-92 (96)
291 2dnl_A Cytoplasmic polyadenyla 99.5 1.1E-14 3.9E-19 131.7 6.4 65 49-114 6-73 (114)
292 1sjr_A Polypyrimidine tract-bi 99.5 4.4E-14 1.5E-18 136.0 10.8 81 142-226 46-126 (164)
293 2xs2_A Deleted in azoospermia- 99.5 8.1E-15 2.8E-19 129.5 5.3 79 48-132 6-84 (102)
294 1sjr_A Polypyrimidine tract-bi 99.5 5.1E-14 1.7E-18 135.5 11.1 83 48-135 43-125 (164)
295 1whx_A Hypothetical protein ri 99.5 2.7E-14 9.3E-19 128.8 8.7 76 141-224 9-84 (111)
296 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 2.6E-14 9E-19 133.1 8.8 80 139-221 60-140 (140)
297 1nu4_A U1A RNA binding domain; 99.5 1.7E-14 5.7E-19 126.1 7.0 82 140-226 6-91 (97)
298 2xnq_A Nuclear polyadenylated 99.5 5.4E-14 1.9E-18 123.7 10.2 77 47-134 18-95 (97)
299 2lmi_A GRSF-1, G-rich sequence 99.5 6.8E-15 2.3E-19 131.7 4.2 82 140-225 9-93 (107)
300 2e5i_A Heterogeneous nuclear r 99.5 2.1E-13 7.1E-18 125.8 14.0 80 49-135 23-103 (124)
301 2i2y_A Fusion protein consists 99.5 6.4E-14 2.2E-18 132.7 10.8 81 46-134 68-148 (150)
302 3lqv_A PRE-mRNA branch site pr 99.5 6.3E-14 2.2E-18 126.5 10.0 81 140-225 6-86 (115)
303 3md3_A Nuclear and cytoplasmic 99.5 1.1E-13 3.7E-18 131.2 12.1 83 47-132 83-165 (166)
304 2cqh_A IGF-II mRNA-binding pro 99.5 3.6E-14 1.2E-18 123.2 7.8 80 49-137 6-86 (93)
305 1wel_A RNA-binding protein 12; 99.5 1.9E-14 6.6E-19 132.1 6.5 82 140-225 23-105 (124)
306 1whx_A Hypothetical protein ri 99.5 2.1E-14 7.1E-19 129.6 6.4 76 49-133 8-83 (111)
307 2e5g_A U6 snRNA-specific termi 99.5 7E-14 2.4E-18 121.8 9.5 79 141-227 7-85 (94)
308 1fxl_A Paraneoplastic encephal 99.5 1.1E-13 3.8E-18 131.2 11.5 82 49-131 86-167 (167)
309 1b7f_A Protein (SXL-lethal pro 99.5 1.5E-13 5.1E-18 130.9 12.3 83 48-131 86-168 (168)
310 2qfj_A FBP-interacting repress 99.5 1.2E-13 4.1E-18 137.1 11.9 84 49-135 123-206 (216)
311 2f3j_A RNA and export factor b 99.5 4.6E-14 1.6E-18 138.0 8.4 82 140-224 86-167 (177)
312 2dha_A FLJ20171 protein; RRM d 99.5 1.5E-14 5.1E-19 133.3 4.4 81 140-224 21-105 (123)
313 2e5g_A U6 snRNA-specific termi 99.5 1.3E-13 4.5E-18 120.1 10.2 77 49-134 6-82 (94)
314 2cq2_A Hypothetical protein LO 99.5 4.9E-14 1.7E-18 127.9 7.7 80 48-133 22-105 (114)
315 3zzy_A Polypyrimidine tract-bi 99.5 9.8E-14 3.3E-18 128.8 9.9 80 142-226 28-108 (130)
316 2cq2_A Hypothetical protein LO 99.5 7.3E-14 2.5E-18 126.8 8.6 82 139-225 22-107 (114)
317 3beg_B Splicing factor, argini 99.5 7.1E-14 2.4E-18 126.8 8.4 62 50-118 15-76 (115)
318 2xs2_A Deleted in azoospermia- 99.5 2.8E-14 9.5E-19 126.1 5.5 82 140-226 7-88 (102)
319 3egn_A RNA-binding protein 40; 99.5 2E-14 7E-19 135.0 4.8 86 48-136 42-132 (143)
320 3d2w_A TAR DNA-binding protein 99.5 6.8E-14 2.3E-18 121.2 7.5 78 48-135 8-85 (89)
321 1wg1_A KIAA1579 protein, homol 99.5 8.9E-14 3E-18 119.7 8.2 76 141-225 4-79 (88)
322 3egn_A RNA-binding protein 40; 99.5 3.9E-14 1.3E-18 133.1 6.2 87 139-228 42-134 (143)
323 1wg1_A KIAA1579 protein, homol 99.5 8.1E-14 2.8E-18 120.0 7.6 75 50-134 4-78 (88)
324 1iqt_A AUF1, heterogeneous nuc 99.5 2.4E-14 8.3E-19 119.0 4.1 74 144-221 1-75 (75)
325 2g4b_A Splicing factor U2AF 65 99.5 1.6E-13 5.4E-18 131.4 10.3 80 49-131 92-171 (172)
326 3zzy_A Polypyrimidine tract-bi 99.5 1.9E-13 6.4E-18 126.9 10.2 81 49-135 26-107 (130)
327 1wf0_A TDP-43, TAR DNA-binding 99.5 5.9E-14 2E-18 120.6 6.2 79 141-228 4-82 (88)
328 3d2w_A TAR DNA-binding protein 99.5 1.1E-13 3.9E-18 119.8 8.0 78 140-226 9-86 (89)
329 2yh0_A Splicing factor U2AF 65 99.4 2E-13 7E-18 133.6 10.6 85 48-135 111-195 (198)
330 2j8a_A Histone-lysine N-methyl 99.4 8.3E-14 2.8E-18 127.9 6.9 80 52-134 3-96 (136)
331 2e5i_A Heterogeneous nuclear r 99.4 2.3E-13 8E-18 125.4 9.9 77 143-225 26-103 (124)
332 2hgm_A HNRPF protein, heteroge 99.4 6.7E-14 2.3E-18 129.4 5.9 80 140-224 40-121 (126)
333 2bz2_A Negative elongation fac 99.4 2.3E-13 7.9E-18 124.8 9.5 82 43-135 31-112 (121)
334 4f02_A Polyadenylate-binding p 99.4 2.4E-13 8.3E-18 136.1 10.3 83 140-225 13-96 (213)
335 3pgw_S U1-70K; protein-RNA com 99.4 2.2E-13 7.6E-18 151.3 10.2 83 48-133 99-181 (437)
336 2e44_A Insulin-like growth fac 99.4 2.4E-13 8.1E-18 118.6 8.3 80 140-225 13-93 (96)
337 2cjk_A Nuclear polyadenylated 99.4 1.9E-13 6.5E-18 130.2 7.8 80 50-133 86-165 (167)
338 1l3k_A Heterogeneous nuclear r 99.4 3.6E-13 1.2E-17 131.7 9.9 85 49-137 102-186 (196)
339 2hzc_A Splicing factor U2AF 65 99.4 3E-13 1E-17 115.5 7.9 72 49-130 4-86 (87)
340 2voo_A Lupus LA protein; RNA-b 99.4 5.3E-13 1.8E-17 132.3 10.8 80 141-224 108-187 (193)
341 1wf0_A TDP-43, TAR DNA-binding 99.4 1.2E-13 4.2E-18 118.7 5.2 78 49-136 3-80 (88)
342 2pe8_A Splicing factor 45; RRM 99.4 7.2E-13 2.5E-17 118.6 9.9 84 48-134 5-94 (105)
343 2pe8_A Splicing factor 45; RRM 99.4 9.8E-13 3.3E-17 117.7 10.5 82 140-224 6-94 (105)
344 2bz2_A Negative elongation fac 99.4 5.6E-13 1.9E-17 122.2 9.1 78 140-227 37-114 (121)
345 3tyt_A Heterogeneous nuclear r 99.4 6.3E-13 2.2E-17 132.9 9.8 78 141-225 3-81 (205)
346 2diu_A KIAA0430 protein; struc 99.4 1.2E-12 4.2E-17 113.8 9.9 72 144-227 11-87 (96)
347 2diu_A KIAA0430 protein; struc 99.4 2.3E-12 7.9E-17 112.1 10.6 74 51-137 9-87 (96)
348 3u1l_A PRE-mRNA-splicing facto 99.4 1.5E-12 5.2E-17 133.0 11.0 83 139-226 131-231 (240)
349 2j8a_A Histone-lysine N-methyl 99.4 4.8E-13 1.6E-17 122.9 6.4 78 143-223 3-95 (136)
350 2dnl_A Cytoplasmic polyadenyla 99.4 1.2E-12 4E-17 118.4 8.9 77 140-222 6-86 (114)
351 1e0l_A Formin binding protein; 99.4 1.6E-13 5.6E-18 99.2 2.5 34 557-590 4-37 (37)
352 2hzc_A Splicing factor U2AF 65 99.4 7.4E-13 2.5E-17 113.1 7.0 71 141-220 5-86 (87)
353 3sde_A Paraspeckle component 1 99.4 2.6E-12 9E-17 132.7 12.0 87 50-137 95-182 (261)
354 2dit_A HIV TAT specific factor 99.4 3.4E-12 1.2E-16 115.0 11.3 83 139-227 12-105 (112)
355 3pgw_A U1-A; protein-RNA compl 99.3 2.4E-12 8.1E-17 133.8 10.0 81 140-225 7-91 (282)
356 2voo_A Lupus LA protein; RNA-b 99.3 2.6E-12 8.9E-17 127.3 9.6 79 50-133 108-186 (193)
357 2dit_A HIV TAT specific factor 99.3 7.6E-12 2.6E-16 112.7 11.5 81 47-134 11-102 (112)
358 2ysi_A Transcription elongatio 99.3 6.3E-13 2.1E-17 97.7 3.1 34 556-589 7-40 (40)
359 1fje_B Nucleolin RBD12, protei 99.3 3.9E-12 1.3E-16 122.3 8.9 78 48-133 96-173 (175)
360 3v4m_A Splicing factor U2AF 65 99.3 7.7E-12 2.6E-16 111.8 8.8 81 141-224 4-97 (105)
361 1jmt_A Splicing factor U2AF 35 99.3 2.7E-12 9.3E-17 114.6 5.7 72 147-221 20-103 (104)
362 2adc_A Polypyrimidine tract-bi 99.3 7.2E-12 2.5E-16 126.8 9.6 80 139-225 31-111 (229)
363 3u1l_A PRE-mRNA-splicing facto 99.3 8.9E-12 3.1E-16 127.3 9.8 82 48-135 131-230 (240)
364 2dk1_A WW domain-binding prote 99.2 7.3E-13 2.5E-17 101.7 0.1 38 557-594 5-42 (50)
365 1qm9_A Polypyrimidine tract-bi 99.2 6.5E-12 2.2E-16 123.5 6.9 77 142-225 3-80 (198)
366 3tht_A Alkylated DNA repair pr 99.2 1.5E-11 5.1E-16 131.9 9.8 79 48-132 15-97 (345)
367 2d9o_A DNAJ (HSP40) homolog, s 99.2 3.8E-11 1.3E-15 106.5 10.6 69 151-228 26-94 (100)
368 2dk7_A Transcription elongatio 99.2 2.6E-12 9E-17 104.8 2.6 38 557-594 18-55 (73)
369 3v4m_A Splicing factor U2AF 65 99.2 1.7E-11 5.7E-16 109.7 7.7 83 49-134 3-97 (105)
370 3ue2_A Poly(U)-binding-splicin 99.2 1.9E-11 6.4E-16 111.7 8.2 81 50-133 19-108 (118)
371 3ue2_A Poly(U)-binding-splicin 99.2 2.1E-11 7.3E-16 111.3 8.6 81 141-224 19-109 (118)
372 2d9o_A DNAJ (HSP40) homolog, s 99.2 1.5E-10 5.2E-15 102.5 11.9 77 50-136 9-92 (100)
373 3tht_A Alkylated DNA repair pr 99.2 4.1E-11 1.4E-15 128.6 9.3 79 139-222 15-97 (345)
374 1jmt_A Splicing factor U2AF 35 99.2 1.6E-11 5.4E-16 109.6 4.8 72 56-131 20-103 (104)
375 1ywi_A Formin-binding protein 99.1 7.7E-12 2.6E-16 92.4 1.6 32 557-588 10-41 (41)
376 3s6e_A RNA-binding protein 39; 99.0 4.6E-10 1.6E-14 101.9 7.4 64 155-224 30-93 (114)
377 3s6e_A RNA-binding protein 39; 98.9 2.2E-09 7.4E-14 97.4 8.4 77 49-132 5-91 (114)
378 1owx_A Lupus LA protein, SS-B, 98.9 4.9E-09 1.7E-13 95.8 9.3 64 46-115 13-78 (121)
379 3dxb_A Thioredoxin N-terminall 98.8 2.9E-08 9.9E-13 99.7 11.0 68 154-224 141-213 (222)
380 1owx_A Lupus LA protein, SS-B, 98.8 1.6E-08 5.5E-13 92.4 8.1 75 141-223 17-95 (121)
381 2dnr_A Synaptojanin-1; RRM dom 98.7 1.4E-08 4.8E-13 87.5 6.9 57 157-224 30-86 (91)
382 2l5f_A PRE-mRNA-processing fac 98.7 7.2E-09 2.5E-13 90.3 4.2 38 557-594 12-49 (92)
383 2jxw_A WW domain-binding prote 98.7 5.7E-09 2E-13 87.4 1.9 34 558-591 4-37 (75)
384 2ysh_A GAS-7, growth-arrest-sp 98.6 1.4E-08 4.9E-13 74.5 3.3 31 558-588 9-39 (40)
385 1e0m_A Wwprototype; SH3 protot 98.6 2E-08 7E-13 72.3 2.8 31 558-588 5-35 (37)
386 2l5f_A PRE-mRNA-processing fac 98.6 8.5E-09 2.9E-13 89.9 0.8 37 558-594 54-90 (92)
387 1ymz_A CC45; artificial protei 98.5 1.8E-08 6.3E-13 75.1 1.8 32 559-590 11-42 (43)
388 2jxw_A WW domain-binding prote 98.5 2E-08 7E-13 84.1 1.9 32 557-588 44-75 (75)
389 1e0n_A Hypothetical protein; Y 98.5 2.4E-08 8.3E-13 66.7 1.8 26 560-586 2-27 (27)
390 1ufw_A Synaptojanin 2; RNP dom 98.5 9.8E-08 3.3E-12 82.7 5.2 74 139-223 12-94 (95)
391 3dxb_A Thioredoxin N-terminall 98.5 2E-07 6.9E-12 93.5 8.0 80 51-133 124-212 (222)
392 1o6w_A PRP40, PRE-mRNA process 98.5 7.6E-08 2.6E-12 80.5 3.4 36 559-594 2-37 (75)
393 1wr3_A Ubiquitin-protein ligas 98.4 8.7E-08 3E-12 68.6 3.1 30 558-587 6-35 (36)
394 2jv4_A Peptidyl-prolyl CIS/tra 98.4 1.6E-07 5.4E-12 73.4 3.8 34 558-591 9-43 (54)
395 2dnr_A Synaptojanin-1; RRM dom 98.4 4.3E-07 1.5E-11 78.3 6.5 71 50-132 6-84 (91)
396 1wr7_A NEDD4-2; all-beta, liga 98.4 1.8E-07 6.1E-12 69.0 3.3 30 558-587 10-39 (41)
397 1wr4_A Ubiquitin-protein ligas 98.4 1.7E-07 5.9E-12 67.0 3.0 30 558-587 6-35 (36)
398 2dmv_A Itchy homolog E3 ubiqui 98.4 1.8E-07 6.2E-12 69.7 3.2 31 558-588 9-39 (43)
399 2jx8_A Hpcif1, phosphorylated 98.4 8.6E-08 2.9E-12 74.3 1.3 31 559-589 13-44 (52)
400 2kyk_A E3 ubiquitin-protein li 98.4 2.3E-07 8E-12 67.6 3.5 30 558-587 8-37 (39)
401 2kpz_A E3 ubiquitin-protein li 98.3 2E-07 6.8E-12 71.5 2.6 32 557-588 13-44 (49)
402 2ysg_A Syntaxin-binding protei 98.2 5.4E-07 1.8E-11 66.0 3.4 30 558-587 9-38 (40)
403 2law_A Yorkie homolog; YAP, SM 98.2 3.5E-07 1.2E-11 66.2 2.3 30 558-587 8-37 (38)
404 2ez5_W Dnedd4, E3 ubiquitin-pr 98.2 7.4E-07 2.5E-11 67.3 3.8 32 557-588 11-42 (46)
405 1ufw_A Synaptojanin 2; RNP dom 98.2 1.2E-06 4.1E-11 76.0 5.0 70 49-130 13-91 (95)
406 2ysf_A E3 ubiquitin-protein li 98.2 1.1E-06 3.8E-11 64.3 3.4 30 558-587 9-38 (40)
407 2ysc_A Amyloid beta A4 precurs 98.1 9.8E-07 3.4E-11 64.1 2.6 30 557-587 9-38 (39)
408 2l4j_A YES-associated protein 98.1 1.8E-06 6E-11 65.2 4.1 32 557-588 12-43 (46)
409 1i5h_W Rnedd4, ubiquitin ligas 98.1 2.4E-06 8.3E-11 65.6 3.9 31 558-588 13-43 (50)
410 2djy_A SMAD ubiquitination reg 98.1 1.7E-06 6E-11 64.0 2.9 31 558-588 9-39 (42)
411 2ysb_A Salvador homolog 1 prot 98.0 2.5E-06 8.6E-11 65.2 3.4 32 557-588 12-43 (49)
412 2l9w_A U4/U6 snRNA-associated- 98.0 8.7E-06 3E-10 72.0 6.7 72 141-220 20-96 (117)
413 2zaj_A Membrane-associated gua 98.0 3.6E-06 1.2E-10 64.3 3.7 32 557-588 14-45 (49)
414 1o6w_A PRP40, PRE-mRNA process 98.0 2E-06 6.7E-11 71.9 2.1 30 559-588 43-72 (75)
415 2kxq_A E3 ubiquitin-protein li 98.0 2.9E-06 9.9E-11 73.5 2.9 34 557-590 10-43 (90)
416 2ho2_A Fe65 protein, amyloid b 97.9 4.9E-06 1.7E-10 60.1 2.7 30 558-588 5-34 (38)
417 1tk7_A CG4244-PB; WW domain, n 97.8 6.2E-06 2.1E-10 71.1 2.7 34 557-590 13-46 (88)
418 2yse_A Membrane-associated gua 97.8 1.1E-05 3.7E-10 64.2 3.7 32 557-588 14-45 (60)
419 2ysd_A Membrane-associated gua 97.8 1.7E-05 5.8E-10 62.5 4.1 33 557-589 15-47 (57)
420 2jmf_A E3 ubiquitin-protein li 97.7 1.5E-05 5.1E-10 61.9 3.2 32 557-588 19-50 (53)
421 2l9w_A U4/U6 snRNA-associated- 97.7 0.00012 4.1E-09 64.8 8.6 65 48-118 18-87 (117)
422 2dwv_A Salvador homolog 1 prot 97.6 2.1E-05 7.2E-10 60.1 2.3 31 558-588 15-45 (49)
423 1tk7_A CG4244-PB; WW domain, n 97.6 2.6E-05 8.9E-10 67.1 2.5 30 558-587 58-87 (88)
424 2e45_A Fe65 protein, amyloid b 97.6 2.7E-05 9.3E-10 60.0 2.3 30 557-587 20-49 (55)
425 2dhx_A Poly (ADP-ribose) polym 97.6 0.00054 1.9E-08 60.1 10.9 89 49-155 6-99 (104)
426 2kxq_A E3 ubiquitin-protein li 97.6 3E-05 1E-09 67.0 2.9 32 557-588 56-87 (90)
427 1jmq_A YAP65, 65 kDa YES-assoc 97.4 6.5E-05 2.2E-09 56.6 3.0 31 558-588 10-40 (46)
428 1wmv_A WWOX, WW domain contain 97.4 0.00011 3.6E-09 57.3 4.1 32 557-588 12-43 (54)
429 1uw4_A UPF3X; nonsense mediate 97.2 0.0016 5.4E-08 56.2 9.0 80 143-222 2-86 (91)
430 1uw4_A UPF3X; nonsense mediate 97.2 0.0013 4.4E-08 56.8 8.4 72 52-123 2-75 (91)
431 1wey_A Calcipressin 1; structu 97.1 0.0011 3.9E-08 58.3 7.5 76 141-224 4-84 (104)
432 1whv_A Poly(A)-specific ribonu 97.1 0.0021 7.1E-08 55.8 8.5 54 52-114 17-70 (100)
433 2dhx_A Poly (ADP-ribose) polym 97.0 0.0023 7.7E-08 56.2 8.5 80 140-230 6-90 (104)
434 3tc5_A Peptidyl-prolyl CIS-tra 96.6 0.00071 2.4E-08 65.0 2.6 32 558-589 11-43 (166)
435 3ctr_A Poly(A)-specific ribonu 96.3 0.005 1.7E-07 53.6 5.7 54 53-114 7-60 (101)
436 1wey_A Calcipressin 1; structu 96.3 0.0063 2.1E-07 53.5 6.4 73 51-132 5-82 (104)
437 2l08_A Regulator of nonsense t 96.3 0.0066 2.2E-07 52.8 6.3 81 142-222 9-94 (97)
438 1wwh_A Nucleoporin 35, nucleop 96.0 0.018 6.2E-07 51.9 8.0 64 48-120 21-84 (119)
439 1whv_A Poly(A)-specific ribonu 96.0 0.013 4.5E-07 50.8 6.5 55 142-204 16-70 (100)
440 2l08_A Regulator of nonsense t 95.8 0.0082 2.8E-07 52.2 4.5 74 50-123 8-83 (97)
441 3l4h_A E3 ubiquitin-protein li 95.7 0.0051 1.7E-07 54.5 2.8 31 558-588 74-104 (109)
442 1wwh_A Nucleoporin 35, nucleop 95.7 0.037 1.3E-06 49.9 8.4 73 141-222 23-95 (119)
443 3ctr_A Poly(A)-specific ribonu 95.1 0.02 6.8E-07 49.8 4.5 54 143-204 7-60 (101)
444 3pq1_A Poly(A) RNA polymerase; 93.8 0.03 1E-06 62.0 3.6 57 50-112 52-108 (464)
445 1yw5_A Peptidyl prolyl CIS/tra 93.6 0.048 1.6E-06 52.6 4.2 36 558-593 9-45 (177)
446 3pq1_A Poly(A) RNA polymerase; 92.8 0.024 8.2E-07 62.8 0.7 58 139-201 50-107 (464)
447 1eg3_A Dystrophin; EF-hand lik 92.1 0.075 2.6E-06 54.5 3.3 36 558-593 13-48 (261)
448 3p3d_A Nucleoporin 53; structu 91.0 0.21 7.3E-06 45.6 4.6 77 142-223 7-98 (132)
449 3olm_A E3 ubiquitin-protein li 88.9 0.15 5.1E-06 56.0 2.2 31 558-588 10-40 (429)
450 3p3d_A Nucleoporin 53; structu 88.7 0.32 1.1E-05 44.5 3.9 68 51-121 7-88 (132)
451 3d45_A Poly(A)-specific ribonu 83.3 2.5 8.7E-05 47.3 8.5 54 52-114 441-494 (507)
452 2f06_A Conserved hypothetical 79.2 12 0.00043 33.7 10.4 124 52-208 7-135 (144)
453 4eyt_A Telomerase associated p 70.9 21 0.00071 30.2 8.4 61 47-115 8-68 (129)
454 4hhu_A OR280; engineered prote 70.7 30 0.001 30.7 9.7 106 101-220 11-128 (170)
455 3d45_A Poly(A)-specific ribonu 66.9 6.9 0.00024 43.7 6.3 56 142-205 440-495 (507)
456 2g0c_A ATP-dependent RNA helic 66.0 11 0.00039 30.2 5.9 59 153-222 12-75 (76)
457 3lpe_A Putative transcription 58.7 25 0.00087 29.7 7.0 32 77-113 39-70 (92)
458 1p6t_A Potential copper-transp 52.2 1.2E+02 0.0041 26.5 14.6 120 52-203 8-135 (151)
459 2ew9_A Copper-transporting ATP 52.1 1.2E+02 0.004 26.4 13.7 128 52-203 6-141 (149)
460 4eyt_A Telomerase associated p 51.3 62 0.0021 27.3 7.9 56 142-204 12-67 (129)
461 2hiy_A Hypothetical protein; C 50.3 97 0.0033 29.5 10.4 122 52-191 7-144 (183)
462 3iot_A Maltose-binding protein 49.9 5.7 0.00019 43.0 1.8 16 487-502 379-394 (449)
463 3fry_A Probable copper-exporti 46.2 33 0.0011 26.6 5.4 55 142-202 6-60 (73)
464 3le4_A Microprocessor complex 43.9 14 0.00049 30.0 2.7 34 557-590 29-62 (79)
465 3iot_A Maltose-binding protein 43.7 5 0.00017 43.4 0.1 8 51-58 6-13 (449)
466 1ywx_A 30S ribosomal protein S 42.1 76 0.0026 27.5 7.3 48 61-109 28-80 (102)
467 2xzm_P RPS24E; ribosome, trans 42.0 16 0.00056 33.8 3.2 48 61-109 31-83 (149)
468 2v94_A RPS24, 30S ribosomal pr 40.6 43 0.0015 29.3 5.5 48 61-109 37-89 (107)
469 1xn9_A 30S ribosomal protein S 40.1 92 0.0031 26.9 7.5 49 61-110 28-81 (101)
470 4e8u_A Putative uncharacterize 39.8 27 0.00091 33.3 4.4 56 53-111 14-81 (172)
471 3dxs_X Copper-transporting ATP 39.1 85 0.0029 23.9 6.8 56 143-203 4-63 (74)
472 2g0c_A ATP-dependent RNA helic 37.7 69 0.0024 25.4 6.2 57 53-118 2-64 (76)
473 1yg0_A COP associated protein; 35.4 1.2E+02 0.0042 21.7 7.3 54 144-202 4-60 (66)
474 2g1d_A 30S ribosomal protein S 32.8 19 0.00065 31.1 2.0 48 61-109 29-81 (98)
475 3u5c_Y RP50, 40S ribosomal pro 32.6 1.4E+02 0.0047 27.2 7.7 48 61-109 33-85 (135)
476 3g1w_A Sugar ABC transporter; 32.1 2.3E+02 0.008 27.7 10.5 22 94-115 101-122 (305)
477 2xmw_A PACS-N, cation-transpor 31.9 1.4E+02 0.0046 21.8 6.8 54 144-202 6-62 (71)
478 1u8s_A Glycine cleavage system 31.8 3.2E+02 0.011 25.4 12.6 117 53-178 8-130 (192)
479 3h7h_B Transcription elongatio 30.4 78 0.0027 27.5 5.6 33 77-114 40-72 (106)
480 1osd_A MERP, hypothetical prot 30.4 1.5E+02 0.0053 21.6 7.0 56 143-203 5-64 (72)
481 4b8c_D Glucose-repressible alc 30.3 6.6 0.00022 45.7 -1.8 91 380-492 52-144 (727)
482 2cu1_A Mitogen-activated prote 29.4 81 0.0028 27.2 5.3 67 149-226 23-90 (103)
483 1nw9_B Caspase 9, apoptosis-re 29.4 3.8E+02 0.013 26.8 11.6 97 49-164 20-129 (277)
484 3ksm_A ABC-type sugar transpor 29.2 2.5E+02 0.0085 26.8 10.0 58 53-115 62-120 (276)
485 3od5_A Caspase-6; caspase doma 29.1 3.5E+02 0.012 27.2 11.2 91 49-165 20-122 (278)
486 1cpz_A Protein (COPZ); copper 29.0 1.6E+02 0.0054 21.2 6.7 53 144-201 3-59 (68)
487 3e4c_A Caspase-1; zymogen, inf 28.5 3.1E+02 0.011 28.1 10.8 49 51-115 61-118 (302)
488 4a4j_A Pacszia, cation-transpo 28.5 76 0.0026 23.7 4.8 55 143-202 4-61 (69)
489 3j21_T 50S ribosomal protein L 27.9 60 0.002 27.3 4.2 55 146-202 26-82 (86)
490 3p45_A Caspase-6; protease, hu 27.6 3E+02 0.01 26.1 9.7 89 50-164 44-144 (179)
491 3fry_A Probable copper-exporti 27.6 1.1E+02 0.0038 23.4 5.7 56 51-113 6-61 (73)
492 2rop_A Copper-transporting ATP 27.0 3.8E+02 0.013 24.8 13.3 142 51-203 21-183 (202)
493 2l3m_A Copper-ION-binding prot 26.6 1.7E+02 0.0057 21.4 6.5 55 143-202 7-65 (71)
494 1q8l_A Copper-transporting ATP 26.6 2.2E+02 0.0077 22.0 7.8 57 142-203 10-70 (84)
495 1yjr_A Copper-transporting ATP 25.7 2E+02 0.0069 21.1 6.9 45 143-192 6-50 (75)
496 1mwy_A ZNTA; open-faced beta-s 25.0 2.1E+02 0.0072 21.2 7.1 56 143-203 5-62 (73)
497 3cjk_B Copper-transporting ATP 24.3 2.2E+02 0.0075 21.1 7.0 55 144-203 5-63 (75)
498 2g9o_A Copper-transporting ATP 24.3 1.4E+02 0.0047 24.0 5.9 56 143-203 5-64 (90)
499 2inr_A DNA topoisomerase 4 sub 24.1 1.2E+02 0.0041 33.7 6.9 61 51-113 275-339 (514)
500 3ilw_A DNA gyrase subunit A; D 23.7 1E+02 0.0036 33.8 6.3 63 50-113 235-301 (470)
No 1
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=1.7e-33 Score=271.51 Aligned_cols=172 Identities=41% Similarity=0.774 Sum_probs=158.8
Q ss_pred CCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCC--CcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 50 ~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg--~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
++++|||+|||.++|+++|+++|+.||+|++|+|++++.++ +++|||||+|.+.++|++|++.|++..++.+..+.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999999887 8999999999999999999999999888887788888
Q ss_pred eecccccccccCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCce
Q 005357 128 VRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIY 207 (700)
Q Consensus 128 V~~a~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~ 207 (700)
+.+++..... ....++|||+||++++++++|+++|++||.|++|+|+++.++.++|||||+|++.++|.+|++.|||..
T Consensus 82 ~~~~~~~~~~-~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (175)
T 3nmr_A 82 MKPADSEKNN-AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQ 160 (175)
T ss_dssp EEECGGGCCS-CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSC
T ss_pred Eccccccccc-cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCc
Confidence 8887655433 345789999999999999999999999999999999999889999999999999999999999999998
Q ss_pred eccCCccceEEEecC
Q 005357 208 TMRGCDQPLTVRFAD 222 (700)
Q Consensus 208 ~~~g~gr~L~V~~a~ 222 (700)
++.+++++|+|+|++
T Consensus 161 ~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 161 TMEGCSSPMVVKFAD 175 (175)
T ss_dssp CCTTCSSCCEEEECC
T ss_pred ccCCCCCCeEEEecC
Confidence 877778999999985
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=2.3e-34 Score=289.69 Aligned_cols=171 Identities=21% Similarity=0.419 Sum_probs=153.0
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccccee
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQV 128 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V 128 (700)
.+.++|||+|||+++||++|+++|++||+|++|+|++|+.|++++|||||+|++.++|++||+.+++..+ .+ +.+++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~-~g--~~i~~ 89 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI-KG--KPVRI 89 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE-TT--EECEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhc-CC--ccccc
Confidence 4568999999999999999999999999999999999999999999999999999999999999987554 33 45777
Q ss_pred ecccccccccCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCcee
Q 005357 129 RYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYT 208 (700)
Q Consensus 129 ~~a~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~ 208 (700)
.++...........++|||+||++++++++|+++|+.||.|++|+|++++. .++|||||+|++.++|.+|++.|||..+
T Consensus 90 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~-~~~g~~fV~f~~~~~a~~Ai~~lng~~~ 168 (213)
T 4f02_A 90 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLL 168 (213)
T ss_dssp EECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred ccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC-CCceEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 777666555555678999999999999999999999999999999998854 4799999999999999999999999998
Q ss_pred ccCCccceEEEecCCCCC
Q 005357 209 MRGCDQPLTVRFADPKRP 226 (700)
Q Consensus 209 ~~g~gr~L~V~~a~~k~~ 226 (700)
+|+.|+|++++++..
T Consensus 169 ---~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 169 ---NDRKVFVGRFKSRKE 183 (213)
T ss_dssp ---TTEECEEEECCCHHH
T ss_pred ---CCEEEEEEEcCCCcc
Confidence 799999999988643
No 3
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.98 E-value=4.9e-32 Score=266.67 Aligned_cols=177 Identities=25% Similarity=0.436 Sum_probs=145.8
Q ss_pred CCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccc
Q 005357 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGP 125 (700)
Q Consensus 46 ~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~ 125 (700)
.+....++|||+|||+++|+++|+++|+.||.|++|+|++++.+|+++|||||+|.+.++|++||+. ++ ..+.| +.
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~-~~~~g--~~ 83 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RP-HKVDG--RV 83 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CS-CEETT--EE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CC-CEECC--EE
Confidence 3456789999999999999999999999999999999999999999999999999999999999986 45 44444 44
Q ss_pred ceeecccccccc----cCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHH
Q 005357 126 IQVRYADGERER----LGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAI 200 (700)
Q Consensus 126 l~V~~a~~~~~~----~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai 200 (700)
|.|.++...... .....++|||+||++++++++|+++|+.||.|+.|+|+.+. ++.++|||||+|++.++|.+|+
T Consensus 84 l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 163 (196)
T 1l3k_A 84 VEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163 (196)
T ss_dssp CEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred eeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHH
Confidence 677766543322 12345799999999999999999999999999999999986 6889999999999999999999
Q ss_pred HHhcCceeccCCccceEEEecCCCCCCCCC
Q 005357 201 NALNGIYTMRGCDQPLTVRFADPKRPRPGD 230 (700)
Q Consensus 201 ~~Lng~~~~~g~gr~L~V~~a~~k~~r~~~ 230 (700)
+. ++..+ +|+.|.|+++.++......
T Consensus 164 ~~-~~~~~---~G~~i~v~~a~~k~~~~~~ 189 (196)
T 1l3k_A 164 IQ-KYHTV---NGHNCEVRKALSKQEMASA 189 (196)
T ss_dssp HC-SCCEE---TTEECEEEECC--------
T ss_pred Hh-CCcEE---CCEEEEEEecCChhHhccc
Confidence 86 78777 7999999999998765543
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.3e-31 Score=255.70 Aligned_cols=165 Identities=23% Similarity=0.448 Sum_probs=150.7
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceeecc
Q 005357 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYA 131 (700)
Q Consensus 52 ~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~~a 131 (700)
|+|||+|||.++|+++|+++|+.||+|.+|++++++. ++++|||||+|.+.++|++|++.|++..+ . .+.|+|.++
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~-~--g~~i~v~~~ 76 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQI-E--NNIVKINWA 76 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEE-T--TEECEEEEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCcc-C--CCeeEEEEc
Confidence 6899999999999999999999999999999999975 78999999999999999999999988665 3 356888888
Q ss_pred cccccccCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceecc
Q 005357 132 DGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMR 210 (700)
Q Consensus 132 ~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~ 210 (700)
...........++|||+||+.++++++|+++|+.||.|++++|+.+. ++.++|||||+|++.++|.+|++.|||..+
T Consensus 77 ~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-- 154 (166)
T 3md3_A 77 FQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL-- 154 (166)
T ss_dssp CCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE--
T ss_pred CCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc--
Confidence 77766667778899999999999999999999999999999999884 689999999999999999999999999998
Q ss_pred CCccceEEEecCC
Q 005357 211 GCDQPLTVRFADP 223 (700)
Q Consensus 211 g~gr~L~V~~a~~ 223 (700)
+|+.|+|+|++.
T Consensus 155 -~g~~i~v~~a~~ 166 (166)
T 3md3_A 155 -NGRPLRINWAAK 166 (166)
T ss_dssp -TTEECEEEESCC
T ss_pred -CCcEEEEEecCC
Confidence 799999999863
No 5
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=2.4e-31 Score=265.68 Aligned_cols=172 Identities=21% Similarity=0.384 Sum_probs=150.7
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccccee
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQV 128 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V 128 (700)
...++|||+|||.++|+++|+++|+.||+|++|+|++++.+++++|||||+|++.++|++||+.|++..+ .+ +.|+|
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~-~g--~~l~v 102 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVML-GG--RNIKV 102 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCC-C---CCCEE
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCee-CC--eeEEE
Confidence 4578999999999999999999999999999999999998999999999999999999999999987554 44 45777
Q ss_pred ecccccccc---------cCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHH
Q 005357 129 RYADGERER---------LGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALA 198 (700)
Q Consensus 129 ~~a~~~~~~---------~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~ 198 (700)
.++...... .....++|||+||+.++++++|+++|++||.|++|+|+++. ++.++|||||+|++.++|.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 182 (216)
T 2qfj_A 103 GRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQD 182 (216)
T ss_dssp ECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred ecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHH
Confidence 776544322 12445799999999999999999999999999999999985 68899999999999999999
Q ss_pred HHHHhcCceeccCCccceEEEecCCCCC
Q 005357 199 AINALNGIYTMRGCDQPLTVRFADPKRP 226 (700)
Q Consensus 199 Ai~~Lng~~~~~g~gr~L~V~~a~~k~~ 226 (700)
|++.|||..+ +|+.|+|+|+.++..
T Consensus 183 A~~~l~g~~~---~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 183 AVSSMNLFDL---GGQYLRVGKAVTPPM 207 (216)
T ss_dssp HHHHHTTCBC---SSSBCEEEECSSCSS
T ss_pred HHHHccCCEe---CCcEEEEEEecCCCC
Confidence 9999999988 799999999998743
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=2.7e-31 Score=254.66 Aligned_cols=166 Identities=30% Similarity=0.565 Sum_probs=149.4
Q ss_pred CCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceee
Q 005357 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVR 129 (700)
Q Consensus 50 ~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~ 129 (700)
++++|||+|||.++++++|+++|+.||.|++|++++++.+|+++|||||+|.+.++|++|++.|++..+ .+ +.|+|.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~-~g--~~l~v~ 78 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITV-RN--KRLKVS 78 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE-TT--EECEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEe-CC--cEEEEE
Confidence 468999999999999999999999999999999999999999999999999999999999999988655 33 558888
Q ss_pred cccccccccCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCcee
Q 005357 130 YADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYT 208 (700)
Q Consensus 130 ~a~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~ 208 (700)
++..... ....++|||+||+.++++++|+++|++||.|++++|++++ ++.++|||||+|++.++|.+|++.|||..+
T Consensus 79 ~~~~~~~--~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 156 (168)
T 1b7f_A 79 YARPGGE--SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIP 156 (168)
T ss_dssp ECCCCSS--TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ecCCCcc--cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEe
Confidence 8765443 3456899999999999999999999999999999999987 788999999999999999999999999876
Q ss_pred ccCCccceEEEec
Q 005357 209 MRGCDQPLTVRFA 221 (700)
Q Consensus 209 ~~g~gr~L~V~~a 221 (700)
.+++++|+|+||
T Consensus 157 -~g~~~~l~V~~A 168 (168)
T 1b7f_A 157 -EGGSQPLSVRLA 168 (168)
T ss_dssp -TTCSSCCEEEEC
T ss_pred -cCCCeEEEEEeC
Confidence 334599999986
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=5.7e-31 Score=251.48 Aligned_cols=164 Identities=35% Similarity=0.589 Sum_probs=146.7
Q ss_pred CCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceee
Q 005357 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVR 129 (700)
Q Consensus 50 ~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~ 129 (700)
++++|||+|||.++|+++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|++|++.|++..+ .+ +.|+|.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~-~g--~~l~v~ 77 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL-QT--KTIKVS 77 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE-TT--EECEEE
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCcc-CC--ceEEEE
Confidence 368999999999999999999999999999999999998999999999999999999999999988555 33 557888
Q ss_pred cccccccccCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCcee
Q 005357 130 YADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYT 208 (700)
Q Consensus 130 ~a~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~ 208 (700)
++..... ....++|||+||+.++++++|+++|++||.|++++|+.+. ++.++|||||+|++.++|.+|++.|||..+
T Consensus 78 ~~~~~~~--~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 155 (167)
T 1fxl_A 78 YARPSSA--SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKP 155 (167)
T ss_dssp ECCCCCG--GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ecCCCcc--cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCcc
Confidence 7765433 3346789999999999999999999999999999999886 688999999999999999999999999977
Q ss_pred ccCCc--cceEEEec
Q 005357 209 MRGCD--QPLTVRFA 221 (700)
Q Consensus 209 ~~g~g--r~L~V~~a 221 (700)
+| ..|+|+||
T Consensus 156 ---~g~~~~i~v~~A 167 (167)
T 1fxl_A 156 ---SGATEPITVKFA 167 (167)
T ss_dssp ---TTCSSCCEEEEC
T ss_pred ---CCCccceEEEeC
Confidence 45 45889886
No 8
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=7.3e-31 Score=251.70 Aligned_cols=164 Identities=30% Similarity=0.501 Sum_probs=145.0
Q ss_pred CCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceee
Q 005357 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVR 129 (700)
Q Consensus 50 ~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~ 129 (700)
++++|||+|||.++|+++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|++|++.+ ..+.|+ .|.+.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~---~~~~g~--~i~v~ 76 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQ---HILDGK--VIDPK 76 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSC---CEETTE--ECCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcc---cccCCe--Ecccc
Confidence 5789999999999999999999999999999999999999999999999999999999999852 344444 46666
Q ss_pred cccccccccCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCcee
Q 005357 130 YADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYT 208 (700)
Q Consensus 130 ~a~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~ 208 (700)
++..... ....++|||+||+.++++++|+++|+.||.|++|+|+.++ ++.++|||||+|++.++|.+|++ +++..+
T Consensus 77 ~~~~~~~--~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~ 153 (167)
T 2cjk_A 77 RAIPRDE--QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDF 153 (167)
T ss_dssp ECCCHHH--HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECS
T ss_pred cccchhh--ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEe
Confidence 6554332 2346789999999999999999999999999999999885 68999999999999999999998 888777
Q ss_pred ccCCccceEEEecCCC
Q 005357 209 MRGCDQPLTVRFADPK 224 (700)
Q Consensus 209 ~~g~gr~L~V~~a~~k 224 (700)
+|+.|+|+|+++|
T Consensus 154 ---~g~~i~V~~a~pk 166 (167)
T 2cjk_A 154 ---KDRKIEIKRAEPR 166 (167)
T ss_dssp ---SSSCEEEEECCCC
T ss_pred ---CCeEEEEeecCCC
Confidence 7999999999886
No 9
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=1.8e-30 Score=251.49 Aligned_cols=167 Identities=15% Similarity=0.271 Sum_probs=147.2
Q ss_pred CCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccc
Q 005357 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGP 125 (700)
Q Consensus 46 ~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~ 125 (700)
.+....++|||+|||.++|+++|+++|+.||.|.. .++.+..+++++|||||+|.+.++|++||+ |++..+ . .+.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~-~--g~~ 82 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV-F--GNE 82 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEE-T--TEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEe-C--CeE
Confidence 34567899999999999999999999999998877 345555678999999999999999999995 887655 3 356
Q ss_pred ceeecccccccccCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcC
Q 005357 126 IQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNG 205 (700)
Q Consensus 126 l~V~~a~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng 205 (700)
|+|.++...........++|||+||+.++++++|+++|+.||.|..+ +.++.++|||||+|++.++|.+|++.|||
T Consensus 83 l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 1fje_B 83 IKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQG 158 (175)
T ss_dssp EEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTE
T ss_pred EEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCC
Confidence 88998887766666778999999999999999999999999988766 56788999999999999999999999999
Q ss_pred ceeccCCccceEEEecCCC
Q 005357 206 IYTMRGCDQPLTVRFADPK 224 (700)
Q Consensus 206 ~~~~~g~gr~L~V~~a~~k 224 (700)
..+ +|+.|+|+|+++|
T Consensus 159 ~~~---~g~~i~v~~a~~k 174 (175)
T 1fje_B 159 AEI---DGRSVSLYYTGEK 174 (175)
T ss_dssp EEE---TTEEEEEEECSSC
T ss_pred CEE---CCeEEEEEecCCC
Confidence 888 7899999999876
No 10
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=1e-28 Score=258.18 Aligned_cols=172 Identities=21% Similarity=0.249 Sum_probs=155.5
Q ss_pred CCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceee
Q 005357 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVR 129 (700)
Q Consensus 50 ~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~ 129 (700)
..++|||+|||.++|+++|+++|+.||.|.+|+++.++.+|+++|||||+|.+.++|++|++.|++..+ .| +.|+|.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~-~g--~~i~v~ 170 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPL-GP--RTLYVH 170 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE-TT--EECEEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEe-CC--cEEEEE
Confidence 457999999999999999999999999999999999999999999999999999999999999988555 44 568888
Q ss_pred ccccccccc-CcccceeeccCCCccc-cHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCce
Q 005357 130 YADGERERL-GAVEYKLFVGSLNKQA-TEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIY 207 (700)
Q Consensus 130 ~a~~~~~~~-~~~s~~LfV~nLp~~~-teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~ 207 (700)
+++...... ....++|||+||++++ ++++|+++|+.||.|++|+|+.+.+|.++|||||+|++.++|.+|++.|||..
T Consensus 171 ~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 250 (284)
T 3smz_A 171 WTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLS 250 (284)
T ss_dssp ECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCE
T ss_pred ECCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCc
Confidence 887654332 3456789999999995 99999999999999999999999999999999999999999999999999999
Q ss_pred eccCCccceEEEecCCCCCC
Q 005357 208 TMRGCDQPLTVRFADPKRPR 227 (700)
Q Consensus 208 ~~~g~gr~L~V~~a~~k~~r 227 (700)
+ +|+.|+|+|++++..+
T Consensus 251 ~---~g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 251 L---GGSHLRVSFCAPGPPG 267 (284)
T ss_dssp E---TTEECEEEECCSSSCH
T ss_pred c---CCeEEEEEEecCCCcc
Confidence 8 7999999999987653
No 11
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=7.7e-29 Score=258.80 Aligned_cols=163 Identities=17% Similarity=0.405 Sum_probs=140.6
Q ss_pred CCCCCceEEEeCCCCCCcHHHHH----HHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCc
Q 005357 47 DGSSFAKLFVGSVPKTAREEDIR----PLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGG 122 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~~vteedL~----elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~ 122 (700)
+...+++|||+||++++|+++|+ ++|+.||.|++|+|++ +++++|||||+|++.++|++||+.|++..+ .|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g- 79 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPF-YD- 79 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCee-CC-
Confidence 35678999999999999999976 8999999999999876 688999999999999999999999988554 44
Q ss_pred cccceeeccccccc------------------------------------------------------------------
Q 005357 123 VGPIQVRYADGERE------------------------------------------------------------------ 136 (700)
Q Consensus 123 ~~~l~V~~a~~~~~------------------------------------------------------------------ 136 (700)
+.|+|++++.+..
T Consensus 80 -~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (282)
T 3pgw_A 80 -KPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMP 158 (282)
T ss_pred -cEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCC
Confidence 5577777654331
Q ss_pred -------------------------------------------ccCcccceeeccCCCccccHHHHHHHhcCCCceeEEE
Q 005357 137 -------------------------------------------RLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVY 173 (700)
Q Consensus 137 -------------------------------------------~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~ 173 (700)
.....+++|||+||++++++++|+++|++||.|++|+
T Consensus 159 g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~ 238 (282)
T 3pgw_A 159 GQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVR 238 (282)
T ss_pred CCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEE
Confidence 0112357799999999999999999999999999999
Q ss_pred EeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCC-ccceEEEecC
Q 005357 174 LMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGC-DQPLTVRFAD 222 (700)
Q Consensus 174 I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~-gr~L~V~~a~ 222 (700)
|+.++ +|||||+|++.++|.+|++.|||..+ + ++.|+|+|++
T Consensus 239 ~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~---~~g~~l~v~~ak 281 (282)
T 3pgw_A 239 LVPGR----HDIAFVEFDNEVQAGAARDALQGFKI---TQNNAMKISFAK 281 (282)
T ss_pred EecCC----CcEEEEEeCCHHHHHHHHHHcCCcEe---CCCCEEEEEEec
Confidence 99763 58999999999999999999999888 5 8999999986
No 12
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.96 E-value=8e-29 Score=244.04 Aligned_cols=164 Identities=24% Similarity=0.444 Sum_probs=140.2
Q ss_pred CCceEEEeCCCCCCcHHHHHHHHhcc----C-------CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhccccc
Q 005357 50 SFAKLFVGSVPKTAREEDIRPLFEEH----G-------NVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHT 118 (700)
Q Consensus 50 ~~~tLfVgnLP~~vteedL~elF~~~----G-------~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~ 118 (700)
.+++|||+|||.++|+++|+++|+.| | .|.++++ ++++|||||+|.+.++|++|| .|++..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 4 5555555 456789999999999999999 7877554
Q ss_pred CCCccccceeeccccccccc------------------CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-C
Q 005357 119 LPGGVGPIQVRYADGERERL------------------GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-L 179 (700)
Q Consensus 119 ~~g~~~~l~V~~a~~~~~~~------------------~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~ 179 (700)
.| +.|+|.++....... ....++|||+||++++++++|+++|++||.|++|+|+++. +
T Consensus 76 -~g--~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~ 152 (198)
T 2yh0_A 76 -QG--QSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSAT 152 (198)
T ss_dssp -TT--EEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTT
T ss_pred -cC--ceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCC
Confidence 44 457777775432111 1456899999999999999999999999999999999986 7
Q ss_pred CCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEecCCCCC
Q 005357 180 KQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226 (700)
Q Consensus 180 g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~~k~~ 226 (700)
+.++|||||+|++.++|.+|++.|||..+ +|+.|+|+|++++..
T Consensus 153 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 153 GLSKGYAFCEYVDINVTDQAIAGLNGMQL---GDKKLLVQRASVGAK 196 (198)
T ss_dssp CSEEEEEEEEESSSSHHHHHHHHHTTCEE---TTEECEEEESCCCCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHcCCCEE---CCEEEEEEECCCCCC
Confidence 88999999999999999999999999988 799999999988754
No 13
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=4e-28 Score=246.84 Aligned_cols=162 Identities=18% Similarity=0.317 Sum_probs=139.8
Q ss_pred CCCCceEEEeCCCC-CCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccc
Q 005357 48 GSSFAKLFVGSVPK-TAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPI 126 (700)
Q Consensus 48 ~~~~~tLfVgnLP~-~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l 126 (700)
..++++|||+|||. ++++++|+++|+.||.|++|+|++++ +|||||+|.+.++|++||+.|++..+ .| +.|
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~-~g--~~l 102 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKL-HG--KPI 102 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBC-SS--SBC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeE-CC--eEE
Confidence 45789999999999 99999999999999999999999875 68999999999999999999988555 44 457
Q ss_pred eeecccccccc---------------------------------cCcccceeeccCCCccccHHHHHHHhcCCC-ceeEE
Q 005357 127 QVRYADGERER---------------------------------LGAVEYKLFVGSLNKQATEKEVEEIFSPYG-RVEDV 172 (700)
Q Consensus 127 ~V~~a~~~~~~---------------------------------~~~~s~~LfV~nLp~~~teedL~~~F~~fG-~V~~v 172 (700)
+|.+++..... ....+++|||+||++++++++|+++|++|| .|++|
T Consensus 103 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v 182 (229)
T 2adc_A 103 RITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGF 182 (229)
T ss_dssp EEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEE
T ss_pred EEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEE
Confidence 77766533100 012257899999999999999999999999 99999
Q ss_pred EEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCC-ccceEEEecCCC
Q 005357 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGC-DQPLTVRFADPK 224 (700)
Q Consensus 173 ~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~-gr~L~V~~a~~k 224 (700)
+|+.+ .+|||||+|++.++|.+|++.|+|..+ + ++.|+|+|++++
T Consensus 183 ~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~---~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 183 KFFQK----DRKMALIQMGSVEEAVQALIDLHNHDL---GENHHLRVSFSKST 228 (229)
T ss_dssp EECSS----STTCEEEEESSHHHHHHHHHHHTTCBS---SSSCBCEEEECSSC
T ss_pred EEEEC----CCcEEEEEECCHHHHHHHHHHHCCCcc---CCCCeEEEEEecCC
Confidence 99764 478999999999999999999999987 5 899999999864
No 14
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=1.7e-28 Score=246.38 Aligned_cols=163 Identities=21% Similarity=0.261 Sum_probs=135.3
Q ss_pred CCceEEEeCCC-CCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccccee
Q 005357 50 SFAKLFVGSVP-KTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQV 128 (700)
Q Consensus 50 ~~~tLfVgnLP-~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V 128 (700)
++++|||+||+ .++|+++|+++|+.||.|++|+|++++ +|||||+|++.++|++||+.||+..+ .| +.|+|
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~-~g--~~l~v 74 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFM-FG--QKMNV 74 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEE-TT--EECEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEE-CC--ceEEE
Confidence 56899999999 899999999999999999999998763 69999999999999999999988665 34 44777
Q ss_pred eccccccc------------------------c-----------cCcccceeeccCCCccccHHHHHHHhcCCCce--eE
Q 005357 129 RYADGERE------------------------R-----------LGAVEYKLFVGSLNKQATEKEVEEIFSPYGRV--ED 171 (700)
Q Consensus 129 ~~a~~~~~------------------------~-----------~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V--~~ 171 (700)
.+++.... + ....+++|||+||++++++++|+++|+.||.| ++
T Consensus 75 ~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~ 154 (205)
T 3tyt_A 75 CVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTS 154 (205)
T ss_dssp EECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSE
T ss_pred EEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEE
Confidence 76643210 0 01224579999999999999999999999999 89
Q ss_pred EEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceecc-CCccceEEEec
Q 005357 172 VYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMR-GCDQPLTVRFA 221 (700)
Q Consensus 172 v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~-g~gr~L~V~~a 221 (700)
|+|+.++ +..+|||||+|++.++|.+||+.|||..+.. ++.+++.|+|+
T Consensus 155 v~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 155 VKVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp EEECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 9998775 5567999999999999999999999998732 22347788775
No 15
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=4.3e-28 Score=233.46 Aligned_cols=158 Identities=25% Similarity=0.468 Sum_probs=138.6
Q ss_pred CCceEEEeCCCCCCcHHHHHHHHhcc----C-------CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhccccc
Q 005357 50 SFAKLFVGSVPKTAREEDIRPLFEEH----G-------NVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHT 118 (700)
Q Consensus 50 ~~~tLfVgnLP~~vteedL~elF~~~----G-------~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~ 118 (700)
+.++|||+|||.++|+++|+++|+.| | .|.++++.+ ++|||||+|.+.++|++|+ .|++..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 57899999999999999999999999 6 677777644 4689999999999999999 7887554
Q ss_pred CCCccccceeecccccccccCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHH
Q 005357 119 LPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMAL 197 (700)
Q Consensus 119 ~~g~~~~l~V~~a~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~ 197 (700)
.| +.|+|.++..... ....++|||+||+.++++++|+++|++||.|++|+|+++. ++.++|||||+|++.++|.
T Consensus 76 -~g--~~i~v~~~~~~~~--~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~ 150 (172)
T 2g4b_A 76 -QG--QSLKIRRPHDYQP--LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTD 150 (172)
T ss_dssp -TT--EECEEECCSSCCC--CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHH
T ss_pred -cC--ceeeecCCcccCC--CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHH
Confidence 44 4577877654433 2346899999999999999999999999999999999996 7899999999999999999
Q ss_pred HHHHHhcCceeccCCccceEEEecC
Q 005357 198 AAINALNGIYTMRGCDQPLTVRFAD 222 (700)
Q Consensus 198 ~Ai~~Lng~~~~~g~gr~L~V~~a~ 222 (700)
+|++.|||..+ +|+.|+|+||.
T Consensus 151 ~A~~~l~g~~~---~g~~l~V~~As 172 (172)
T 2g4b_A 151 QAIAGLNGMQL---GDKKLLVQRAS 172 (172)
T ss_dssp HHHHHHTTCEE---TTEECEEEECC
T ss_pred HHHHHcCCCEE---CCeEEEEEeCC
Confidence 99999999988 79999999974
No 16
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.95 E-value=1.4e-27 Score=247.57 Aligned_cols=164 Identities=26% Similarity=0.436 Sum_probs=145.7
Q ss_pred CCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccc
Q 005357 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPI 126 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l 126 (700)
.....++|||+|||.++|+++|+++|+.||.|.+|+|.++ +|||||+|.+.++|++|++.|++..+ .+ +.|
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i-~g--~~l 88 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTIL-KS--RPL 88 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEE-TT--EEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEE-CC--cee
Confidence 3466789999999999999999999999999999999654 58999999999999999999988655 33 568
Q ss_pred eeecccccccccCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHh-cC
Q 005357 127 QVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINAL-NG 205 (700)
Q Consensus 127 ~V~~a~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~L-ng 205 (700)
+|.++.. .++|||+||+.++++++|+++|+.||.|++|+|+.++++.++|||||+|++.++|.+|++.| ++
T Consensus 89 ~v~~a~~--------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~ 160 (261)
T 3sde_A 89 RIRFATH--------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDG 160 (261)
T ss_dssp EEEECCC--------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHS
T ss_pred Eeeeccc--------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCC
Confidence 8887753 56899999999999999999999999999999999988999999999999999999999999 56
Q ss_pred ceeccCCccceEEEecCCCCCC
Q 005357 206 IYTMRGCDQPLTVRFADPKRPR 227 (700)
Q Consensus 206 ~~~~~g~gr~L~V~~a~~k~~r 227 (700)
..++.+.+++|.|++++....+
T Consensus 161 ~~~~~~~~r~i~v~~~~~~~~~ 182 (261)
T 3sde_A 161 AFLLTTTPRPVIVEPMEQFDDE 182 (261)
T ss_dssp CEESSSSCCBCEEEECCCEESS
T ss_pred eEEecCCCceEEEeeccccCcc
Confidence 6666667999999999876543
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.95 E-value=5e-28 Score=239.35 Aligned_cols=160 Identities=18% Similarity=0.305 Sum_probs=138.1
Q ss_pred CCceEEEeCCCC-CCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccccee
Q 005357 50 SFAKLFVGSVPK-TAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQV 128 (700)
Q Consensus 50 ~~~tLfVgnLP~-~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V 128 (700)
++++|||+|||. ++++++|+++|+.||.|++|++++++ +|||||+|.+.++|++|++.|++..+ .| +.|+|
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~-~g--~~l~v 73 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKL-HG--KPIRI 73 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCC-SS--CCCEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCee-cC--eEEEE
Confidence 468999999999 99999999999999999999998875 68999999999999999999988555 44 45777
Q ss_pred ecccccccc---------------------------------cCcccceeeccCCCccccHHHHHHHhcCCC-ceeEEEE
Q 005357 129 RYADGERER---------------------------------LGAVEYKLFVGSLNKQATEKEVEEIFSPYG-RVEDVYL 174 (700)
Q Consensus 129 ~~a~~~~~~---------------------------------~~~~s~~LfV~nLp~~~teedL~~~F~~fG-~V~~v~I 174 (700)
.+++..... ....+++|||+||+.++++++|+++|++|| .|++|+|
T Consensus 74 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i 153 (198)
T 1qm9_A 74 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF 153 (198)
T ss_dssp EECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEE
T ss_pred EEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEE
Confidence 766532100 012367899999999999999999999999 9999999
Q ss_pred eeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCC-ccceEEEecCCC
Q 005357 175 MRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGC-DQPLTVRFADPK 224 (700)
Q Consensus 175 ~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~-gr~L~V~~a~~k 224 (700)
+.+ .+|||||+|++.++|.+|++.|||..+ + ++.|+|+|++++
T Consensus 154 ~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~---~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 154 FQK----DRKMALIQMGSVEEAVQALIDLHNHDL---GENHHLRVSFSKST 197 (198)
T ss_dssp SST----TSSCEEEECSSHHHHHHHHHHHTSSCC---SSCCSCCEEEECCC
T ss_pred EeC----CCcEEEEEeCCHHHHHHHHHHhcCCcc---CCCCeEEEEeeccc
Confidence 765 378999999999999999999999988 5 899999999864
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=7.8e-28 Score=252.45 Aligned_cols=168 Identities=16% Similarity=0.311 Sum_probs=142.8
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHG-NVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G-~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
...++|||+|||.++++++|+++|+.|| .|.+|++++++. +.++|||||+|.+.++|++|++.|++..+ .| +.|+
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l~ 190 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKI-EG--YTLV 190 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEE-TT--EECE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEe-CC--cEEE
Confidence 3578999999999999999999999999 999999999876 88999999999999999999999988665 44 5678
Q ss_pred eecccccccc-----cCcccceeeccCCCcc-ccHHHHHHHhcCCCceeEEEEeeCCC--CCccceEEEEeCCHHHHHHH
Q 005357 128 VRYADGERER-----LGAVEYKLFVGSLNKQ-ATEKEVEEIFSPYGRVEDVYLMRDEL--KQSRGCGFVKYSHRDMALAA 199 (700)
Q Consensus 128 V~~a~~~~~~-----~~~~s~~LfV~nLp~~-~teedL~~~F~~fG~V~~v~I~~d~~--g~srG~aFVeF~~~e~A~~A 199 (700)
|.++...... .....++|||+||+++ +++++|+++|+.||.|++|+|+++.. +.++|||||+|.+.++|.+|
T Consensus 191 v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A 270 (292)
T 2ghp_A 191 TKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERA 270 (292)
T ss_dssp EEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHH
T ss_pred EEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHH
Confidence 8877654332 2345689999999999 99999999999999999999999876 89999999999999999999
Q ss_pred HHHhcCceeccCCccceEEEecCCC
Q 005357 200 INALNGIYTMRGCDQPLTVRFADPK 224 (700)
Q Consensus 200 i~~Lng~~~~~g~gr~L~V~~a~~k 224 (700)
+ .|||..+ +|+.|+|.|+++|
T Consensus 271 ~-~l~g~~~---~g~~i~V~~a~~k 291 (292)
T 2ghp_A 271 L-QMNRSLL---GNREISVSLADKK 291 (292)
T ss_dssp G-GGTTEEE---TTEEEEEEECCCC
T ss_pred H-HhcCCEE---CCcEEEEEEecCC
Confidence 9 9999988 7999999999886
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.94 E-value=5.7e-27 Score=245.87 Aligned_cols=165 Identities=17% Similarity=0.274 Sum_probs=135.2
Q ss_pred CCCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccc
Q 005357 45 LVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVG 124 (700)
Q Consensus 45 ~~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~ 124 (700)
.......++|||+|||.++|+++|+++|+.||+|.+|+|++++.+ ++|||||+|.+.++|++||+ +++..+ .| +
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~-~g--~ 108 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVV-GQ--N 108 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEE-TT--E
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEe-CC--c
Confidence 334567899999999999999999999999999999999998753 58999999999999999995 776444 44 4
Q ss_pred cceeecccccccccCcccceeeccCCCccccHHHHHHHhcCCC-ceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHh
Q 005357 125 PIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYG-RVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINAL 203 (700)
Q Consensus 125 ~l~V~~a~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG-~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~L 203 (700)
.|.|.++ ..++|||+||+.++++++|+++|+.|| .|+.|+|+.+..+.++|||||+|.+.++|.+|++.|
T Consensus 109 ~i~v~~~---------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l 179 (292)
T 2ghp_A 109 EIIVSHL---------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKL 179 (292)
T ss_dssp ECEEEEC---------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHH
T ss_pred EEEEEEC---------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 5777765 367999999999999999999999999 999999999888889999999999999999999999
Q ss_pred cCceeccCCccceEEEecCCCCCC
Q 005357 204 NGIYTMRGCDQPLTVRFADPKRPR 227 (700)
Q Consensus 204 ng~~~~~g~gr~L~V~~a~~k~~r 227 (700)
++..+ +++.|+|.++.++...
T Consensus 180 ~g~~~---~g~~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 180 NGLKI---EGYTLVTKVSNPLEKS 200 (292)
T ss_dssp TTCEE---TTEECEEEECCCC---
T ss_pred CCCEe---CCcEEEEEECCCCccc
Confidence 99988 7899999999876543
No 20
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.94 E-value=2.1e-26 Score=240.66 Aligned_cols=157 Identities=24% Similarity=0.408 Sum_probs=140.5
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccccee
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQV 128 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V 128 (700)
.++++|||+|||.++|+++|+++|+.|| |++|++ ++++|||||+|.+.++|++|++.|++..+ .| +.|+|
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~-~g--~~i~v 89 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRL-RE--RELSV 89 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEE-TT--EECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCee-CC--eEEEE
Confidence 3578999999999999999999999999 999988 45678999999999999999999988664 44 45777
Q ss_pred ecccccccccCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCce
Q 005357 129 RYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIY 207 (700)
Q Consensus 129 ~~a~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~ 207 (700)
.++. ..++|||+||+.++++++|+++|+.||.|+.|+|+.+. ++.++|||||+|.+.++|.+|++.|++..
T Consensus 90 ~~~~--------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~ 161 (284)
T 3smz_A 90 QLQP--------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKP 161 (284)
T ss_dssp EECC--------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred EecC--------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCE
Confidence 7643 35689999999999999999999999999999999886 68999999999999999999999999998
Q ss_pred eccCCccceEEEecCCCCC
Q 005357 208 TMRGCDQPLTVRFADPKRP 226 (700)
Q Consensus 208 ~~~g~gr~L~V~~a~~k~~ 226 (700)
+ +++.|+|.+++++..
T Consensus 162 ~---~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 162 L---GPRTLYVHWTDAGQL 177 (284)
T ss_dssp E---TTEECEEEECCGGGC
T ss_pred e---CCcEEEEEECCCCCC
Confidence 8 799999999987643
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.86 E-value=1.2e-21 Score=187.26 Aligned_cols=144 Identities=24% Similarity=0.356 Sum_probs=114.1
Q ss_pred EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccc----cceeeccc----ccccccCcccceeeccCCC
Q 005357 80 EVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVG----PIQVRYAD----GERERLGAVEYKLFVGSLN 151 (700)
Q Consensus 80 ~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~----~l~V~~a~----~~~~~~~~~s~~LfV~nLp 151 (700)
.++|+.+.. +++|||||+|.+.++|++|++.+++...+.+... ........ ..........++|||+||+
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 567777764 6899999999999999999998876544333210 01111110 1111123446899999999
Q ss_pred ccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEecCCCCCCC
Q 005357 152 KQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRP 228 (700)
Q Consensus 152 ~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~~k~~r~ 228 (700)
+++++++|+++|+.||.|++|+|+++. ++.++|||||+|++.++|.+|++.|||..+ +++.|+|+|++++..+.
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v~~a~~~~~~~ 154 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL---DGRELRVQMARYGRPPD 154 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEES---SSSEEEEEEECCSSCCC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE---CCeEEEEEECCCCCCCC
Confidence 999999999999999999999999986 689999999999999999999999999887 78999999999875543
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.80 E-value=1.1e-19 Score=165.21 Aligned_cols=104 Identities=17% Similarity=0.339 Sum_probs=70.8
Q ss_pred CCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceee
Q 005357 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVR 129 (700)
Q Consensus 50 ~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~ 129 (700)
.+++|||+|||+++|+++|+++|+.||.|++|+|++|+ +.+||||||+|++.++|++||+.|++..+ .| +.|+|+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~-~g--~~i~V~ 78 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLL-ND--RKVFVG 78 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEE-TT--EECEEE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEE-CC--EEEEEE
Confidence 45789999999999999999999999999999999986 45899999999999999999999988655 44 458888
Q ss_pred ccccccccc------CcccceeeccCCCccccHHH
Q 005357 130 YADGERERL------GAVEYKLFVGSLNKQATEKE 158 (700)
Q Consensus 130 ~a~~~~~~~------~~~s~~LfV~nLp~~~teed 158 (700)
++..+..+. ....++|||+||++++|++.
T Consensus 79 ~a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 79 RFKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp ESSCCCC----------------------------
T ss_pred ECCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 776544332 22345799999999998864
No 23
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.79 E-value=1.7e-19 Score=171.21 Aligned_cols=125 Identities=19% Similarity=0.377 Sum_probs=107.1
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHh-cccccCCCccccceeecccccc--------------cccCcccceeeccCCCccc
Q 005357 90 GQQQGCCFIKYATSEEADRAIRAL-HNQHTLPGGVGPIQVRYADGER--------------ERLGAVEYKLFVGSLNKQA 154 (700)
Q Consensus 90 g~skG~aFVeF~~~edA~~Ai~~L-~g~~~~~g~~~~l~V~~a~~~~--------------~~~~~~s~~LfV~nLp~~~ 154 (700)
...+|+++|+|.+.++|++|++.+ ++. .++| .+++.++.... .......++|||+||++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~-~~~G---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~ 85 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDN-GVDG---EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNG 85 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHH-TCCC---EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCC
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCC-CCCC---ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCC
Confidence 467899999999999999999999 664 4455 46777665421 2223456899999999999
Q ss_pred cHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEecCCCC
Q 005357 155 TEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKR 225 (700)
Q Consensus 155 teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~~k~ 225 (700)
++++|+++|+.||.|++|+|+++ ++|||||+|++.++|.+|++.|||..+ +++.|+|+|+++++
T Consensus 86 t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 86 NKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTL---CGCRVRVELSNGEK 149 (150)
T ss_dssp SCHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCS---SSSCCEEEECCCCC
T ss_pred CHHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEE---CCeEEEEEEcCCCC
Confidence 99999999999999999999877 689999999999999999999999887 79999999998864
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.74 E-value=5.7e-18 Score=150.04 Aligned_cols=81 Identities=32% Similarity=0.560 Sum_probs=73.8
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccccee
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQV 128 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V 128 (700)
...++|||+|||.++|+++|+++|+.||+|++|+|++|+.||+++|||||+|++.++|++||+.||+..+ .| +.|+|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~-~g--r~l~V 93 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL-QS--KTIKV 93 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEE-TT--EECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEE-CC--EEEEE
Confidence 3467899999999999999999999999999999999999999999999999999999999999988665 34 56888
Q ss_pred eccc
Q 005357 129 RYAD 132 (700)
Q Consensus 129 ~~a~ 132 (700)
++++
T Consensus 94 ~~Ak 97 (99)
T 4fxv_A 94 SYAR 97 (99)
T ss_dssp EECC
T ss_pred EEee
Confidence 8875
No 25
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.74 E-value=2e-18 Score=191.80 Aligned_cols=158 Identities=16% Similarity=0.274 Sum_probs=109.1
Q ss_pred HHHHHHhccCCeeEEEEee----cC-CCCCcccEE--EEEeCCHHHHHHHHHHhcccccCCC------------ccccce
Q 005357 67 DIRPLFEEHGNVIEVALIK----DK-KTGQQQGCC--FIKYATSEEADRAIRALHNQHTLPG------------GVGPIQ 127 (700)
Q Consensus 67 dL~elF~~~G~V~~i~i~~----d~-~Tg~skG~a--FVeF~~~edA~~Ai~~L~g~~~~~g------------~~~~l~ 127 (700)
+|.++|..+++|..|..+. ++ .+....|++ |++|.+..++..++..++....... ....+.
T Consensus 8 ~L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~ 87 (437)
T 3pgw_S 8 NLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELK 87 (437)
T ss_pred cHHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3789999999998874333 22 122223333 8888775544433322111000000 000011
Q ss_pred eecccccccccCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCc
Q 005357 128 VRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGI 206 (700)
Q Consensus 128 V~~a~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~ 206 (700)
+..............++|||+||++++|+++|+++|+.||.|+.|.|+.+. ++.++|||||+|.+.++|.+||+.|||.
T Consensus 88 ~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 167 (437)
T 3pgw_S 88 MWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGK 167 (437)
T ss_pred hcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCC
Confidence 111111112223456799999999999999999999999999999999885 6889999999999999999999999999
Q ss_pred eeccCCccceEEEecCCCCCC
Q 005357 207 YTMRGCDQPLTVRFADPKRPR 227 (700)
Q Consensus 207 ~~~~g~gr~L~V~~a~~k~~r 227 (700)
.| +++.|.|.|+..+...
T Consensus 168 ~i---~gr~i~V~~a~~~~~~ 185 (437)
T 3pgw_S 168 KI---DGRRVLVDVERGRTVK 185 (437)
T ss_pred EE---CCEEEEEEEeCCCCCC
Confidence 88 7999999999987554
No 26
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.73 E-value=1.3e-17 Score=148.64 Aligned_cols=91 Identities=44% Similarity=0.782 Sum_probs=83.0
Q ss_pred CCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccc
Q 005357 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPI 126 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l 126 (700)
.....++|||+|||.++++++|+++|+.||.|++|+|++|+.|++++|||||+|++.++|++||+.|++..++.+..+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 35567999999999999999999999999999999999999999999999999999999999999999988777667889
Q ss_pred eeecccccccc
Q 005357 127 QVRYADGERER 137 (700)
Q Consensus 127 ~V~~a~~~~~~ 137 (700)
+|++++.+...
T Consensus 89 ~v~~a~~~~~~ 99 (106)
T 2dgp_A 89 QVKPADSESRG 99 (106)
T ss_dssp EEEECCCCSCC
T ss_pred EEEECCccccc
Confidence 99998776544
No 27
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.73 E-value=2.9e-17 Score=146.01 Aligned_cols=90 Identities=37% Similarity=0.700 Sum_probs=80.3
Q ss_pred CCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccc
Q 005357 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPI 126 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l 126 (700)
.....++|||+|||.++++++|+++|+.||.|++|+|++++ +++++|||||+|++.++|++||+.|++..+..+..+.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34568999999999999999999999999999999999998 79999999999999999999999999877765544779
Q ss_pred eeecccccccc
Q 005357 127 QVRYADGERER 137 (700)
Q Consensus 127 ~V~~a~~~~~~ 137 (700)
+|++++.+..+
T Consensus 90 ~V~~a~~~~~~ 100 (105)
T 2dnh_A 90 VVKFADTDKES 100 (105)
T ss_dssp EEEESCSSCCC
T ss_pred EEEECccCccc
Confidence 99998876554
No 28
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.73 E-value=2.8e-17 Score=148.84 Aligned_cols=87 Identities=22% Similarity=0.389 Sum_probs=77.4
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
..+.++|||+|||.++++++|+++|+.||.|++|+|++++.+++++|||||+|++.++|++||+.|++..+ .+ +.|+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l~ 98 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI-GM--KRLK 98 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE-TT--EECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEE-CC--EEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999988655 33 5688
Q ss_pred eecccccccc
Q 005357 128 VRYADGERER 137 (700)
Q Consensus 128 V~~a~~~~~~ 137 (700)
|++++.+...
T Consensus 99 V~~a~~~~~~ 108 (115)
T 2cpz_A 99 VQLKRSKNDS 108 (115)
T ss_dssp EECCCCSCCC
T ss_pred EEEcCCCCcC
Confidence 8888765543
No 29
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.73 E-value=4.8e-18 Score=159.03 Aligned_cols=126 Identities=24% Similarity=0.355 Sum_probs=82.3
Q ss_pred EEEEEeCCHHHHHHHHHHhcccccCCCccccceeecccccccccCcccceeeccCCCccccHHHHHHHhcCCCceeEEEE
Q 005357 95 CCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYL 174 (700)
Q Consensus 95 ~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~~a~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I 174 (700)
++|++|++...+.+|++.+++....... .+.+.. ........++|||+||++++++++|+++|+.||.|++|+|
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~----~~~~~~--~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i 79 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG----SMSYGR--PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYI 79 (135)
T ss_dssp ---------------------------------CCSCC--SCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEEC
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC----CCCcCC--CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 6788888888888999888764442221 122222 2223445689999999999999999999999999999999
Q ss_pred eeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEecCCCCCCCC
Q 005357 175 MRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPG 229 (700)
Q Consensus 175 ~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~~k~~r~~ 229 (700)
+.++ ++.++|||||+|++.++|.+|++.||+..+ +++.|+|+|++++..+..
T Consensus 80 ~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i---~g~~l~V~~a~~~~~~~~ 132 (135)
T 2lea_A 80 PRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL---DGRELRVQMARYGRPPDS 132 (135)
T ss_dssp CCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCS---SSSCCEEEECCCCCCCTT
T ss_pred EecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE---CCEEEEEEECCCCCCCcc
Confidence 9886 689999999999999999999999999987 789999999998765443
No 30
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.72 E-value=1.9e-17 Score=149.64 Aligned_cols=84 Identities=15% Similarity=0.277 Sum_probs=75.2
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccccee
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQV 128 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V 128 (700)
.+.++|||+||+++++|++|+++|++||+|++|+|++|+.|++++|||||+|++.++|++||+.||+..+ .| +.|+|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~-~g--r~i~V 80 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSV-MG--NIIHA 80 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE-TT--EECEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEE-CC--eEEEE
Confidence 4568999999999999999999999999999999999999999999999999999999999999988665 34 45788
Q ss_pred ecccccc
Q 005357 129 RYADGER 135 (700)
Q Consensus 129 ~~a~~~~ 135 (700)
+++...+
T Consensus 81 ~~a~~~~ 87 (110)
T 3s8s_A 81 QLDIKGQ 87 (110)
T ss_dssp EECSTTH
T ss_pred EECCCCc
Confidence 8776443
No 31
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.71 E-value=5.8e-18 Score=147.55 Aligned_cols=84 Identities=26% Similarity=0.531 Sum_probs=74.8
Q ss_pred CceEEEeCCCCCCcHHHHHHHHhccC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceee
Q 005357 51 FAKLFVGSVPKTAREEDIRPLFEEHG-NVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVR 129 (700)
Q Consensus 51 ~~tLfVgnLP~~vteedL~elF~~~G-~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~ 129 (700)
+++|||+|||.++||+||+++|+.|| +|++|+|++|+.||++||||||+|++.++|++||+.+++...+.| +.|+|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g--r~i~V~ 78 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG--QKVSMH 78 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT--EEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC--EEEEEE
Confidence 47899999999999999999999999 899999999999999999999999999999999998766555655 458888
Q ss_pred ccccccc
Q 005357 130 YADGERE 136 (700)
Q Consensus 130 ~a~~~~~ 136 (700)
+++.+..
T Consensus 79 ~a~~~~~ 85 (91)
T 2lxi_A 79 YSDPKPK 85 (91)
T ss_dssp CCCSCCC
T ss_pred EcCCCCC
Confidence 8876543
No 32
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.4e-17 Score=144.28 Aligned_cols=89 Identities=29% Similarity=0.478 Sum_probs=78.4
Q ss_pred CCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccc
Q 005357 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGP 125 (700)
Q Consensus 46 ~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~ 125 (700)
.+....++|||+|||.++++++|+++|+.||.|++|+|+.++.+++++|||||+|++.++|++||+.|++..+ .+ +.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~ 86 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKL-YG--KP 86 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBC-SS--CB
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeE-CC--eE
Confidence 3456779999999999999999999999999999999999999999999999999999999999999988554 44 56
Q ss_pred ceeecccccccc
Q 005357 126 IQVRYADGERER 137 (700)
Q Consensus 126 l~V~~a~~~~~~ 137 (700)
|+|++++.+...
T Consensus 87 l~v~~a~~~~~~ 98 (105)
T 1x5u_A 87 IRVNKASAHNKN 98 (105)
T ss_dssp CEEEETTTTSCC
T ss_pred EEEEECCCCCcC
Confidence 888888765543
No 33
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.71 E-value=6e-17 Score=146.47 Aligned_cols=91 Identities=25% Similarity=0.447 Sum_probs=79.6
Q ss_pred CCCCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcc
Q 005357 44 DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGV 123 (700)
Q Consensus 44 ~~~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~ 123 (700)
...+..+.++|||+|||.++++++|+++|+.||.|++|+|++++.+++++|||||+|++.++|++||+.|++..+ .+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g-- 84 (115)
T 2dgo_A 8 QKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL-GG-- 84 (115)
T ss_dssp SCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEE-TT--
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE-CC--
Confidence 334456789999999999999999999999999999999999998999999999999999999999999988554 44
Q ss_pred ccceeecccccccc
Q 005357 124 GPIQVRYADGERER 137 (700)
Q Consensus 124 ~~l~V~~a~~~~~~ 137 (700)
+.|+|++++.+...
T Consensus 85 ~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 85 RQIRTNWATRKPPA 98 (115)
T ss_dssp EECEEEESSCCCCC
T ss_pred EEEEEEEccCCCCC
Confidence 56888888765443
No 34
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.1e-17 Score=144.69 Aligned_cols=89 Identities=28% Similarity=0.421 Sum_probs=78.7
Q ss_pred CCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccc
Q 005357 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGP 125 (700)
Q Consensus 46 ~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~ 125 (700)
.+..+.++|||+|||.++++++|+++|+.||+|++|+|++++.+++++|||||+|++.++|++||+.|++..+ .+ +.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~~ 86 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGY-DH--LI 86 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEE-TT--EE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCee-CC--cE
Confidence 3456789999999999999999999999999999999999999999999999999999999999999988665 34 56
Q ss_pred ceeecccccccc
Q 005357 126 IQVRYADGERER 137 (700)
Q Consensus 126 l~V~~a~~~~~~ 137 (700)
|+|++++.+...
T Consensus 87 l~v~~a~~~~~~ 98 (103)
T 2cq0_A 87 LNVEWAKPSTNS 98 (103)
T ss_dssp CEEEESSCCCCS
T ss_pred EEEEECCCCCCC
Confidence 888888765443
No 35
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.3e-17 Score=141.42 Aligned_cols=84 Identities=19% Similarity=0.327 Sum_probs=75.4
Q ss_pred CCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccc
Q 005357 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGP 125 (700)
Q Consensus 46 ~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~ 125 (700)
.+....++|||+|||.++++++|+++|+.||.|++|+|++++.+++++|||||+|++.++|++||+.|++..+ .+ +.
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~~ 86 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL-DG--RR 86 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEE-TT--EE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE-CC--EE
Confidence 3456789999999999999999999999999999999999999999999999999999999999999988555 33 55
Q ss_pred ceeeccc
Q 005357 126 IQVRYAD 132 (700)
Q Consensus 126 l~V~~a~ 132 (700)
|+|++++
T Consensus 87 l~v~~a~ 93 (95)
T 2cqc_A 87 IRVSGPS 93 (95)
T ss_dssp EEEECCS
T ss_pred EEEEecC
Confidence 8888775
No 36
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.70 E-value=3.3e-17 Score=148.16 Aligned_cols=105 Identities=15% Similarity=0.307 Sum_probs=90.6
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
....++|||+|||.++|+++|+++|+.||.|.+|+|+++ +.++|||||+|.+.++|++|++.||+..+ .| +.|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~~l~ 78 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNV-SN--RYLV 78 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBS-SS--CBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEE-CC--eEEE
Confidence 456789999999999999999999999999999999876 45699999999999999999999988655 44 5688
Q ss_pred eecccccccccCcccceeeccCCCccccHHHHHHHhcCCCc
Q 005357 128 VRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGR 168 (700)
Q Consensus 128 V~~a~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~ 168 (700)
|.++...... .++....++++|+++|++||.
T Consensus 79 v~~a~~~~~~----------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 79 VLYYNANRAF----------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp EEECCHHHHT----------TTSCHHHHHHHHHHHHHHHCC
T ss_pred EEEecCChhh----------hhhhHhHhHHHHHHHHHHhCC
Confidence 8888755433 577888999999999999984
No 37
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=4.4e-17 Score=141.75 Aligned_cols=82 Identities=27% Similarity=0.493 Sum_probs=73.5
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
....++|||+|||.++++++|+++|+.||+|++|+|++++.+++++|||||+|++.++|++||+.|++..+ .+ +.|+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~~l~ 89 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQL-FG--RVIK 89 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEE-TT--EEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCee-CC--cEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999988555 33 5578
Q ss_pred eeccc
Q 005357 128 VRYAD 132 (700)
Q Consensus 128 V~~a~ 132 (700)
|++++
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 87763
No 38
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.70 E-value=3.2e-17 Score=145.24 Aligned_cols=79 Identities=37% Similarity=0.559 Sum_probs=75.0
Q ss_pred cceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEe
Q 005357 142 EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220 (700)
Q Consensus 142 s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~ 220 (700)
.++|||+|||.++|+++|+++|++||.|++|+|++++ ++.++|||||+|++.++|.+|++.|||..+ +|+.|+|+|
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~---~gr~l~V~~ 95 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL---QSKTIKVSY 95 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEE---CCEEEEEEE
Confidence 4689999999999999999999999999999999986 589999999999999999999999999988 799999999
Q ss_pred cCC
Q 005357 221 ADP 223 (700)
Q Consensus 221 a~~ 223 (700)
++|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 976
No 39
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=9.5e-17 Score=142.28 Aligned_cols=89 Identities=21% Similarity=0.450 Sum_probs=77.7
Q ss_pred CCCCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcc
Q 005357 44 DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGV 123 (700)
Q Consensus 44 ~~~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~ 123 (700)
+.......++|||+|||+++|+++|+++|+.||.|++|+|+.+ ++.++|||||+|++.++|++||+.|++..+ .+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g-- 82 (103)
T 2d9p_A 8 DRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIV-AT-- 82 (103)
T ss_dssp CCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBS-SS--
T ss_pred CccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEe-CC--
Confidence 3444567899999999999999999999999999999999998 799999999999999999999999988655 44
Q ss_pred ccceeecccccccc
Q 005357 124 GPIQVRYADGERER 137 (700)
Q Consensus 124 ~~l~V~~a~~~~~~ 137 (700)
+.|+|++++.+..+
T Consensus 83 ~~l~V~~a~~~~~~ 96 (103)
T 2d9p_A 83 KPLYVALAQRKEER 96 (103)
T ss_dssp SBCEEEECSSCCCC
T ss_pred cEEEEEEecccccC
Confidence 56888888766554
No 40
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.69 E-value=6e-17 Score=150.46 Aligned_cols=89 Identities=19% Similarity=0.347 Sum_probs=78.7
Q ss_pred CCCCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcc
Q 005357 44 DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGV 123 (700)
Q Consensus 44 ~~~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~ 123 (700)
...+..+.++|||+|||+++++++|+++|+.||+|++|+|++|+.+++++|||||+|++.++|++||+.|++..+ .|
T Consensus 39 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i-~g-- 115 (129)
T 2kxn_B 39 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL-DG-- 115 (129)
T ss_dssp CSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCS-SS--
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE-CC--
Confidence 344566789999999999999999999999999999999999999999999999999999999999999988554 44
Q ss_pred ccceeecccccc
Q 005357 124 GPIQVRYADGER 135 (700)
Q Consensus 124 ~~l~V~~a~~~~ 135 (700)
+.|+|++++.++
T Consensus 116 ~~l~V~~a~~~~ 127 (129)
T 2kxn_B 116 RRIRVDFSITKR 127 (129)
T ss_dssp SCCEESCCSSSS
T ss_pred EEEEEEEecCCC
Confidence 558888887654
No 41
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=141.04 Aligned_cols=86 Identities=19% Similarity=0.443 Sum_probs=75.8
Q ss_pred CCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccc
Q 005357 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGP 125 (700)
Q Consensus 46 ~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~ 125 (700)
....+.++|||+|||.++|+++|+++|+.||.|++|+|+.++ +++++|||||+|++.++|++||+.|++..+ .| +.
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~ 87 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTI-KE--NI 87 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEES-SS--CE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEE-CC--EE
Confidence 345667899999999999999999999999999999999998 899999999999999999999999988554 44 55
Q ss_pred ceeecccccc
Q 005357 126 IQVRYADGER 135 (700)
Q Consensus 126 l~V~~a~~~~ 135 (700)
|+|++++...
T Consensus 88 l~v~~a~~~~ 97 (100)
T 2do4_A 88 IKVAISNSGP 97 (100)
T ss_dssp EEEEECCCCS
T ss_pred EEEEECCCCC
Confidence 8888887544
No 42
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=9.7e-17 Score=143.93 Aligned_cols=88 Identities=22% Similarity=0.396 Sum_probs=77.3
Q ss_pred CCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhc------ccccCC
Q 005357 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALH------NQHTLP 120 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~------g~~~~~ 120 (700)
+....++|||+|||+++|+++|+++|+.||.|++|+|++|+.+++++|||||+|++.++|++||+.|+ + ..+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~-~~~~ 89 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGG-LKLD 89 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCC-EESS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCC-cEEc
Confidence 45668899999999999999999999999999999999999999999999999999999999999997 5 4444
Q ss_pred Cccccceeecccccccc
Q 005357 121 GGVGPIQVRYADGERER 137 (700)
Q Consensus 121 g~~~~l~V~~a~~~~~~ 137 (700)
| +.|+|+++..+...
T Consensus 90 g--~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 90 G--RQLKVDLAVTRDEA 104 (111)
T ss_dssp S--CEEEEECCCCCCCC
T ss_pred C--EEEEEEECCCCccC
Confidence 4 45888888765443
No 43
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=142.69 Aligned_cols=89 Identities=31% Similarity=0.539 Sum_probs=77.6
Q ss_pred CCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeec-CCCCCcccEEEEEeCCHHHHHHHHHHh-cccccCCCcc
Q 005357 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKD-KKTGQQQGCCFIKYATSEEADRAIRAL-HNQHTLPGGV 123 (700)
Q Consensus 46 ~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d-~~Tg~skG~aFVeF~~~edA~~Ai~~L-~g~~~~~g~~ 123 (700)
......++|||+|||.++++++|+++|+.||.|++|+|+++ +.+++++|||||+|++.++|++||+.| ++.. +.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~-~~g-- 86 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTH-LYG-- 86 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCB-SSS--
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCe-ECC--
Confidence 34567899999999999999999999999999999999999 788999999999999999999999999 6644 444
Q ss_pred ccceeecccccccc
Q 005357 124 GPIQVRYADGERER 137 (700)
Q Consensus 124 ~~l~V~~a~~~~~~ 137 (700)
+.|+|++++.+...
T Consensus 87 ~~l~v~~a~~~~~~ 100 (107)
T 2cph_A 87 RRLVLEWADSEVTV 100 (107)
T ss_dssp CBCEEEECCCCCCC
T ss_pred CEEEEEeCCCCCCC
Confidence 46888888765543
No 44
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=6.9e-17 Score=143.18 Aligned_cols=88 Identities=22% Similarity=0.360 Sum_probs=78.0
Q ss_pred CCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccc
Q 005357 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPI 126 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l 126 (700)
+..+.++|||+|||.++++++|+++|+.||.|++|+|+.++.|++++|||||+|++.++|++||+.|++..+ .| +.|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~~l 85 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAEL-DG--REL 85 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCB-TT--BCC
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEE-CC--cEE
Confidence 345679999999999999999999999999999999999999999999999999999999999999988554 44 568
Q ss_pred eeecccccccc
Q 005357 127 QVRYADGERER 137 (700)
Q Consensus 127 ~V~~a~~~~~~ 137 (700)
+|++++..+..
T Consensus 86 ~V~~a~~~~~~ 96 (103)
T 2dnm_A 86 RVQVARYGRRD 96 (103)
T ss_dssp EEEECSSCCSC
T ss_pred EEEECCcCCCC
Confidence 88888765443
No 45
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.69 E-value=7.1e-17 Score=150.95 Aligned_cols=88 Identities=34% Similarity=0.551 Sum_probs=80.2
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
....++|||+||+++++++||+++|++||.|++|+|++++ ++.++|||||+|++.++|.+|++.||+..+ +++.|+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~ 115 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNI---LNKRLK 115 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEEC---SSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---CCeEEE
Confidence 3456899999999999999999999999999999999886 578999999999999999999999999887 799999
Q ss_pred EEecCCCCCCCC
Q 005357 218 VRFADPKRPRPG 229 (700)
Q Consensus 218 V~~a~~k~~r~~ 229 (700)
|++++++..+.+
T Consensus 116 v~~a~~~~~~~~ 127 (139)
T 1u6f_A 116 VALAASGHQRPG 127 (139)
T ss_dssp EEESSCCCCCCC
T ss_pred EEECCCCCCCCC
Confidence 999998865543
No 46
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.4e-16 Score=140.25 Aligned_cols=86 Identities=29% Similarity=0.589 Sum_probs=75.7
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
....++|||+|||.++++++|+++|+.||.|++|+|++|+.+++++|||||+|++.++|++||+ |++.. +.| +.|+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~-~~g--~~l~ 82 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHD-IMG--KKVE 82 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCB-SSS--CBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCE-ECC--eEEE
Confidence 4567999999999999999999999999999999999999999999999999999999999998 87754 444 4588
Q ss_pred eecccccccc
Q 005357 128 VRYADGERER 137 (700)
Q Consensus 128 V~~a~~~~~~ 137 (700)
|++++.+...
T Consensus 83 V~~a~~~~~~ 92 (99)
T 2dgs_A 83 VKRAEPRDSK 92 (99)
T ss_dssp EEECCCCCCC
T ss_pred EEECCCCccc
Confidence 8888765443
No 47
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.69 E-value=6.6e-17 Score=154.39 Aligned_cols=87 Identities=25% Similarity=0.339 Sum_probs=79.7
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
....++|||+||++++++++|+++|++||.|++|+|+.+. ++.++|||||+|++.++|++||+.||+..+ +++.|+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l~ 112 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRL---DDRIIR 112 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEE---TTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE---CCeEEE
Confidence 3457899999999999999999999999999999999987 588999999999999999999999999988 799999
Q ss_pred EEecCCCCCCC
Q 005357 218 VRFADPKRPRP 228 (700)
Q Consensus 218 V~~a~~k~~r~ 228 (700)
|+|++++..+.
T Consensus 113 V~~a~~~~~~~ 123 (156)
T 1h2v_Z 113 TDWDAGFKEGR 123 (156)
T ss_dssp EEEESCCCTTC
T ss_pred EEECCCCCCcC
Confidence 99999865543
No 48
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9.6e-17 Score=141.87 Aligned_cols=86 Identities=27% Similarity=0.508 Sum_probs=76.4
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
..+.++|||+|||.++++++|+++|+.||.|++|+|++++.+++++|||||+|++.++|++||+.|++..+ .+ +.|+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~~l~ 85 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV-DG--RQIR 85 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCT-TS--CCCE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE-CC--eEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999988654 44 5588
Q ss_pred eeccccccc
Q 005357 128 VRYADGERE 136 (700)
Q Consensus 128 V~~a~~~~~ 136 (700)
|++++....
T Consensus 86 v~~a~~~~~ 94 (102)
T 1x5s_A 86 VDQAGKSSD 94 (102)
T ss_dssp EEEEECCCC
T ss_pred EEECCCCCC
Confidence 888765544
No 49
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.69 E-value=1.4e-16 Score=141.59 Aligned_cols=91 Identities=42% Similarity=0.704 Sum_probs=81.5
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
....++|||+||++++++++|+++|+.||.|++|+|+++.++.++|||||+|++.++|.+|++.||+..+..++++.|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999884333399999
Q ss_pred EecCCCCCCCC
Q 005357 219 RFADPKRPRPG 229 (700)
Q Consensus 219 ~~a~~k~~r~~ 229 (700)
+|++++..+..
T Consensus 92 ~~a~~~~~~~~ 102 (105)
T 2dnh_A 92 KFADTDKESGP 102 (105)
T ss_dssp EESCSSCCCSC
T ss_pred EECccCcccCC
Confidence 99998765543
No 50
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.4e-16 Score=138.90 Aligned_cols=86 Identities=31% Similarity=0.518 Sum_probs=76.7
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccccee
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQV 128 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V 128 (700)
.+.++|||+|||.++++++|+++|+.||.|++|+|++++.+++++|||||+|++.++|++||+.|++..+ .+ +.|+|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l~V 79 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL-AG--RPMRV 79 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCS-SS--SCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCee-CC--cEEEE
Confidence 4578999999999999999999999999999999999999999999999999999999999999988555 44 55888
Q ss_pred ecccccccc
Q 005357 129 RYADGERER 137 (700)
Q Consensus 129 ~~a~~~~~~ 137 (700)
++++.+...
T Consensus 80 ~~a~~~~~~ 88 (95)
T 2dnz_A 80 GHVTERLDG 88 (95)
T ss_dssp EESSCCCCC
T ss_pred EEcccccCC
Confidence 888765543
No 51
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.68 E-value=2.8e-17 Score=144.71 Aligned_cols=84 Identities=21% Similarity=0.407 Sum_probs=73.9
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCC--eeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccc---cCCCc
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGN--VIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQH---TLPGG 122 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~--V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~---~~~g~ 122 (700)
...-.+|||+||++++|+++|+++|++||. |.+|+|++|+.||++||||||+|++.++|++||+.|++.. .++|
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G- 84 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG- 84 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT-
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC-
Confidence 345679999999999999999999999994 6799999999999999999999999999999999998864 3555
Q ss_pred cccceeecccc
Q 005357 123 VGPIQVRYADG 133 (700)
Q Consensus 123 ~~~l~V~~a~~ 133 (700)
+.|+|++++.
T Consensus 85 -r~i~V~~Aks 94 (95)
T 2lkz_A 85 -KTIGVDFAKS 94 (95)
T ss_dssp -EEEEEEECCC
T ss_pred -EEEEEEEccC
Confidence 4588888763
No 52
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.8e-16 Score=138.10 Aligned_cols=85 Identities=31% Similarity=0.586 Sum_probs=78.5
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
..+++|||+||+.++++++|+++|++||.|++|+|++++ ++.++|||||+|++.++|.+|++.||+..+ +++.|+|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~V 79 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL---AGRPMRV 79 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCS---SSSCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCee---CCcEEEE
Confidence 346799999999999999999999999999999999986 588999999999999999999999999888 7999999
Q ss_pred EecCCCCCC
Q 005357 219 RFADPKRPR 227 (700)
Q Consensus 219 ~~a~~k~~r 227 (700)
++++++..+
T Consensus 80 ~~a~~~~~~ 88 (95)
T 2dnz_A 80 GHVTERLDG 88 (95)
T ss_dssp EESSCCCCC
T ss_pred EEcccccCC
Confidence 999987554
No 53
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=1.5e-16 Score=141.06 Aligned_cols=87 Identities=20% Similarity=0.455 Sum_probs=75.8
Q ss_pred CCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccc
Q 005357 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGP 125 (700)
Q Consensus 46 ~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~ 125 (700)
......++|||+|||+++++++|+++|+.|| |++|+|++|+.|++++|||||+|++.++|++|| .|++..+ .+ +.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~-~g--~~ 84 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALL-GD--RS 84 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEE-TT--EE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeE-CC--eE
Confidence 3455689999999999999999999999997 999999999999999999999999999999999 8987555 44 56
Q ss_pred ceeecccccccc
Q 005357 126 IQVRYADGERER 137 (700)
Q Consensus 126 l~V~~a~~~~~~ 137 (700)
|+|++++.....
T Consensus 85 l~V~~a~~~~~~ 96 (103)
T 2dng_A 85 LRVDIAEGRKQD 96 (103)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEEecCCCCC
Confidence 888888765543
No 54
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-16 Score=144.10 Aligned_cols=90 Identities=19% Similarity=0.326 Sum_probs=78.8
Q ss_pred CCCCCCCceEEEeCCCCCCcHHHHHHHHhccCCee--------EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhccc
Q 005357 45 LVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVI--------EVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQ 116 (700)
Q Consensus 45 ~~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~--------~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~ 116 (700)
..+....++|||+|||.++|+++|+++|+.||.|+ .|+|+.|+.+++++|||||+|++.++|++||+.|++.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 34456789999999999999999999999999999 6999999999999999999999999999999999886
Q ss_pred ccCCCccccceeecccccccc
Q 005357 117 HTLPGGVGPIQVRYADGERER 137 (700)
Q Consensus 117 ~~~~g~~~~l~V~~a~~~~~~ 137 (700)
.+ .+ +.|+|++++.+...
T Consensus 89 ~~-~g--~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 89 DF-QG--SKLKVSLARKKPPM 106 (113)
T ss_dssp EE-TT--EECEEECSSCCCCS
T ss_pred cc-CC--CEEEEEECCCCCCC
Confidence 65 33 56888888765543
No 55
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.8e-16 Score=140.48 Aligned_cols=87 Identities=28% Similarity=0.482 Sum_probs=80.5
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
....++|||+||++++++++|+++|++||.|++|+|+.+ ++.++|||||+|++.++|.+|++.||+..+ +++.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~V 87 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV---ATKPLYV 87 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBS---SSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEe---CCcEEEE
Confidence 345789999999999999999999999999999999998 889999999999999999999999999988 7999999
Q ss_pred EecCCCCCCCC
Q 005357 219 RFADPKRPRPG 229 (700)
Q Consensus 219 ~~a~~k~~r~~ 229 (700)
+|++++..+..
T Consensus 88 ~~a~~~~~~~~ 98 (103)
T 2d9p_A 88 ALAQRKEERQS 98 (103)
T ss_dssp EECSSCCCCCC
T ss_pred EEecccccCCC
Confidence 99998866544
No 56
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=137.17 Aligned_cols=82 Identities=24% Similarity=0.446 Sum_probs=72.6
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccccee
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQV 128 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V 128 (700)
.+.++|||+|||.++++++|+++|+.||.|.+|++++++.+++++|||||+|++.++|++|++.|++..+ .| +.|+|
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~~l~v 80 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL-GG--RQIRT 80 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE-TT--EECEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE-CC--eEEEE
Confidence 4578999999999999999999999999999999999998999999999999999999999999988554 44 55888
Q ss_pred ecccc
Q 005357 129 RYADG 133 (700)
Q Consensus 129 ~~a~~ 133 (700)
++++.
T Consensus 81 ~~a~~ 85 (87)
T 3bs9_A 81 NWATR 85 (87)
T ss_dssp EEEC-
T ss_pred EecCC
Confidence 88764
No 57
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.68 E-value=1.3e-16 Score=145.01 Aligned_cols=84 Identities=23% Similarity=0.408 Sum_probs=74.7
Q ss_pred CCCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccc
Q 005357 45 LVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVG 124 (700)
Q Consensus 45 ~~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~ 124 (700)
..+..+.++|||+||+.+++++||+++|++||+|++|+|++++.+++++|||||+|++.++|++||+.|++..+ +| +
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~ 110 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQV-GT--K 110 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEE-TT--E
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEE-CC--E
Confidence 34456789999999999999999999999999999999999999999999999999999999999999988554 44 4
Q ss_pred cceeecc
Q 005357 125 PIQVRYA 131 (700)
Q Consensus 125 ~l~V~~a 131 (700)
.|+|+++
T Consensus 111 ~l~V~~a 117 (118)
T 2khc_A 111 RLKVQLK 117 (118)
T ss_dssp ECCEEEC
T ss_pred EEEEEec
Confidence 5777765
No 58
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-16 Score=144.46 Aligned_cols=85 Identities=28% Similarity=0.521 Sum_probs=75.6
Q ss_pred CCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccc
Q 005357 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGP 125 (700)
Q Consensus 46 ~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~ 125 (700)
......++|||+|||.++|+++|+++|+.||+|++|+|++++.|++++|||||+|++.++|++||+.+++ .+.+ +.
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~--~~~g--~~ 87 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP--IIDG--RK 87 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC--EETT--EE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC--cCCC--EE
Confidence 3456789999999999999999999999999999999999999999999999999999999999999875 4544 55
Q ss_pred ceeeccccc
Q 005357 126 IQVRYADGE 134 (700)
Q Consensus 126 l~V~~a~~~ 134 (700)
|+|+++...
T Consensus 88 l~V~~a~~~ 96 (116)
T 2cqd_A 88 ANVNLAYLG 96 (116)
T ss_dssp CEEEESTTT
T ss_pred EEEEEcccC
Confidence 888887654
No 59
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-16 Score=140.48 Aligned_cols=87 Identities=26% Similarity=0.359 Sum_probs=77.1
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
..+.++|||+|||.++|+++|+++|+.||.|++|+|++++.+++++|||||+|++.++|++||+.|++..+ .+ +.|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l~ 81 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVF-QG--RMLH 81 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEES-SS--CEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEE-CC--cEEE
Confidence 35679999999999999999999999999999999999998999999999999999999999999988554 44 5588
Q ss_pred eecccccccc
Q 005357 128 VRYADGERER 137 (700)
Q Consensus 128 V~~a~~~~~~ 137 (700)
|++++.+...
T Consensus 82 V~~a~~~~~~ 91 (99)
T 1whw_A 82 VLPSTIKKEA 91 (99)
T ss_dssp EEECCCCSTT
T ss_pred EEEcCCCccc
Confidence 8888765543
No 60
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.9e-17 Score=142.42 Aligned_cols=87 Identities=21% Similarity=0.414 Sum_probs=77.2
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
..+.++|||+|||.++++++|+++|+.||.|++|+|++|+.+++++|||||+|++.++|++||+.|++..+ .+ +.|+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~~l~ 85 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL-FG--RTIR 85 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEE-TT--EEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE-CC--cEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999988555 34 5688
Q ss_pred eecccccccc
Q 005357 128 VRYADGERER 137 (700)
Q Consensus 128 V~~a~~~~~~ 137 (700)
|++++.....
T Consensus 86 V~~a~~~~~~ 95 (102)
T 2cqb_A 86 VNLAKPMRIK 95 (102)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 8888765544
No 61
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=142.29 Aligned_cols=87 Identities=26% Similarity=0.490 Sum_probs=76.0
Q ss_pred CCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccc
Q 005357 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPI 126 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l 126 (700)
+....++|||+|||+++++++|+++|+.||+|++|+|++++.+++++|||||+|++.++|++||+. ++ ..+.+ +.|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~-~~~~g--~~l 87 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RP-HTLDG--RNI 87 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CS-EEETT--EEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CC-CeECC--EEE
Confidence 456789999999999999999999999999999999999999999999999999999999999998 66 44544 458
Q ss_pred eeecccccccc
Q 005357 127 QVRYADGERER 137 (700)
Q Consensus 127 ~V~~a~~~~~~ 137 (700)
+|+++..+...
T Consensus 88 ~V~~a~~~~~~ 98 (105)
T 2dh8_A 88 DPKPCTPRGMQ 98 (105)
T ss_dssp BCCCSCCSSCC
T ss_pred EEEEccCCCCC
Confidence 88887655443
No 62
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=139.85 Aligned_cols=87 Identities=23% Similarity=0.482 Sum_probs=76.0
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCee-EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcc--c
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVI-EVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGV--G 124 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~-~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~--~ 124 (700)
....++|||+|||.++++++|+++|+.||+|+ +|+|++|+.+++++|||||+|++.++|++||+.|++..+ .++. +
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~~~~ 84 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPL-PGATPAK 84 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEE-SSCSSCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCcc-CCCCcce
Confidence 34679999999999999999999999999999 999999999999999999999999999999999988554 4443 2
Q ss_pred cceeecccccc
Q 005357 125 PIQVRYADGER 135 (700)
Q Consensus 125 ~l~V~~a~~~~ 135 (700)
.|+|.+++...
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 28888876543
No 63
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.67 E-value=2.5e-16 Score=143.41 Aligned_cols=85 Identities=27% Similarity=0.454 Sum_probs=79.2
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~ 219 (700)
...++|||+||++++++++|+++|++||.|++|.|+.++++.++|||||+|++.++|++|++.|||..+ +++.|+|+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~---~g~~l~V~ 81 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSL---HGKAIKVE 81 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBC---SSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEE---CCEEEEEE
Confidence 346799999999999999999999999999999999998899999999999999999999999999988 78999999
Q ss_pred ecCCCCCC
Q 005357 220 FADPKRPR 227 (700)
Q Consensus 220 ~a~~k~~r 227 (700)
+++++...
T Consensus 82 ~a~~~~~~ 89 (116)
T 2fy1_A 82 QAKKPSFQ 89 (116)
T ss_dssp ECCCSSCS
T ss_pred ECCCCCCC
Confidence 99876543
No 64
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.9e-16 Score=140.98 Aligned_cols=84 Identities=33% Similarity=0.456 Sum_probs=75.5
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
..+.++|||+|||.++++++|+++|+.||.|++|+|+.++.||+++|||||+|++.++|++||+.|++..+ .| +.|+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l~ 96 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL-MG--QPIS 96 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBS-SS--SBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEE-CC--cEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999988554 44 5588
Q ss_pred eeccccc
Q 005357 128 VRYADGE 134 (700)
Q Consensus 128 V~~a~~~ 134 (700)
|++++.+
T Consensus 97 V~~a~~~ 103 (106)
T 1p27_B 97 VDWCFVR 103 (106)
T ss_dssp EEESEES
T ss_pred EEeecCC
Confidence 8887654
No 65
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.67 E-value=8.6e-17 Score=155.28 Aligned_cols=128 Identities=27% Similarity=0.371 Sum_probs=77.7
Q ss_pred EEeCCHHHHHHHHHHhcccccCCCccccceeeccccc------------------ccccCcccceeeccCCCccccHHHH
Q 005357 98 IKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGE------------------RERLGAVEYKLFVGSLNKQATEKEV 159 (700)
Q Consensus 98 VeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~~a~~~------------------~~~~~~~s~~LfV~nLp~~~teedL 159 (700)
.+|++.+||+.|+..|++.... .+.+.+...++... ........++|||+||++++++++|
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~-~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L 89 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKH-RKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEI 89 (165)
T ss_dssp --------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHH
T ss_pred hhhhccccccccchhhcccccc-ccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHH
Confidence 6889999999999888764432 12222333322110 0111234578999999999999999
Q ss_pred HHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEecCCCCCCCC
Q 005357 160 EEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPG 229 (700)
Q Consensus 160 ~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~~k~~r~~ 229 (700)
+++|+.||.|+.|.|+.+. ++.++|||||+|.+.++|.+||+.|||..+ +++.|.|.|+..+..+..
T Consensus 90 ~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l~V~~a~~~~~~~~ 157 (165)
T 1rk8_A 90 QEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI---MGQTIQVDWCFVKGPKRV 157 (165)
T ss_dssp HHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEEEESEECC----
T ss_pred HHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEE---CCEEEEEEEecCCCCCCC
Confidence 9999999999999999985 688999999999999999999999999988 789999999988765443
No 66
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2e-16 Score=140.57 Aligned_cols=87 Identities=20% Similarity=0.351 Sum_probs=75.6
Q ss_pred CCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCC-CCcccEEEEEeCCHHHHHHHHHHhcccccCCCccc
Q 005357 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKT-GQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVG 124 (700)
Q Consensus 46 ~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~T-g~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~ 124 (700)
......++|||+|||+++++++|+++|+.|| |++|+|++++.| ++++|||||+|++.++|++|| .|++..+ .+ +
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~-~g--~ 84 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL-GN--K 84 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEE-TT--E
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEe-CC--c
Confidence 3345679999999999999999999999999 999999999988 999999999999999999999 8988654 44 5
Q ss_pred cceeecccccccc
Q 005357 125 PIQVRYADGERER 137 (700)
Q Consensus 125 ~l~V~~a~~~~~~ 137 (700)
.|+|++++.+...
T Consensus 85 ~l~V~~a~~~~~~ 97 (104)
T 1wi8_A 85 RIRVDVADQAQDK 97 (104)
T ss_dssp ECEEEECCCCCCC
T ss_pred EEEEEEccCCCCC
Confidence 5888888765443
No 67
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.67 E-value=2.7e-16 Score=138.49 Aligned_cols=81 Identities=23% Similarity=0.420 Sum_probs=73.2
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeE--------EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccC
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIE--------VALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTL 119 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~--------i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~ 119 (700)
....++|||+||+.++++++|+++|+.||.|.+ |+|++|+.+|+++|||||+|++.++|++||+.|++..+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~- 88 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF- 88 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe-
Confidence 456799999999999999999999999999999 99999999999999999999999999999999988655
Q ss_pred CCccccceeecc
Q 005357 120 PGGVGPIQVRYA 131 (700)
Q Consensus 120 ~g~~~~l~V~~a 131 (700)
.| +.|+|+++
T Consensus 89 ~g--~~l~V~~A 98 (99)
T 2la6_A 89 SG--NPIKVSFA 98 (99)
T ss_dssp SS--SBCEEEEC
T ss_pred CC--cEEEEEec
Confidence 34 45777765
No 68
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.67 E-value=1.4e-16 Score=135.76 Aligned_cols=82 Identities=21% Similarity=0.434 Sum_probs=73.7
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
..+.++|||+|||.++++++|+++|+.||.|++|++++++.+++++|||||+|++.++|++|++.|++..+ .| +.|+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l~ 80 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL-FG--RTIR 80 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE-TT--EECE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEE-CC--cEEE
Confidence 35679999999999999999999999999999999999999999999999999999999999999988665 33 5578
Q ss_pred eeccc
Q 005357 128 VRYAD 132 (700)
Q Consensus 128 V~~a~ 132 (700)
|++++
T Consensus 81 v~~ak 85 (85)
T 3mdf_A 81 VNLAK 85 (85)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 87763
No 69
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.67 E-value=1.9e-16 Score=143.24 Aligned_cols=88 Identities=26% Similarity=0.422 Sum_probs=80.6
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
....++|||+||++++++++|+++|++||.|++|+|++++ ++.++|||||+|++.++|.+|++.||+..+ +++.|+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~ 98 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI---GMKRLK 98 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE---TTEECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEE---CCEEEE
Confidence 3456899999999999999999999999999999999987 689999999999999999999999999988 799999
Q ss_pred EEecCCCCCCCC
Q 005357 218 VRFADPKRPRPG 229 (700)
Q Consensus 218 V~~a~~k~~r~~ 229 (700)
|+|++++..+..
T Consensus 99 V~~a~~~~~~~~ 110 (115)
T 2cpz_A 99 VQLKRSKNDSKS 110 (115)
T ss_dssp EECCCCSCCCCC
T ss_pred EEEcCCCCcCCC
Confidence 999998765443
No 70
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2e-16 Score=139.02 Aligned_cols=85 Identities=25% Similarity=0.393 Sum_probs=79.2
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
..+++|||+||++++++++|+++|+.||.|++|+|++++ ++.++|||||+|++.++|.+|++.||+..+ +++.|+|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~V 82 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVF---QGRMLHV 82 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEES---SSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEE---CCcEEEE
Confidence 456799999999999999999999999999999999987 789999999999999999999999999888 7999999
Q ss_pred EecCCCCCC
Q 005357 219 RFADPKRPR 227 (700)
Q Consensus 219 ~~a~~k~~r 227 (700)
++++++..+
T Consensus 83 ~~a~~~~~~ 91 (99)
T 1whw_A 83 LPSTIKKEA 91 (99)
T ss_dssp EECCCCSTT
T ss_pred EEcCCCccc
Confidence 999987654
No 71
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.67 E-value=1.9e-16 Score=134.31 Aligned_cols=81 Identities=22% Similarity=0.488 Sum_probs=73.3
Q ss_pred CceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceeec
Q 005357 51 FAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRY 130 (700)
Q Consensus 51 ~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~~ 130 (700)
+++|||+|||.++++++|+++|+.||.|.+|++++++.+++++|||||+|++.++|++|++.|++..+ .| +.|+|++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~-~g--~~l~v~~ 77 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL-NG--RPLRINW 77 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE-TT--EECEEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCee-CC--cEEEEEe
Confidence 36899999999999999999999999999999999999999999999999999999999999988665 33 5688888
Q ss_pred cccc
Q 005357 131 ADGE 134 (700)
Q Consensus 131 a~~~ 134 (700)
++.+
T Consensus 78 a~~~ 81 (83)
T 3md1_A 78 AAKL 81 (83)
T ss_dssp CCCC
T ss_pred cCcC
Confidence 7653
No 72
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.2e-16 Score=141.35 Aligned_cols=84 Identities=21% Similarity=0.360 Sum_probs=73.9
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
....++|||+||+.++++++|+++|+.||.|++|+|++++ +++++|||||+|++.++|++||+.|++..+ .+ +.|+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l~ 87 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLL-FD--RPMH 87 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEE-TT--EECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEe-CC--CEEE
Confidence 4557899999999999999999999999999999999997 599999999999999999999999988665 34 5588
Q ss_pred eecccccc
Q 005357 128 VRYADGER 135 (700)
Q Consensus 128 V~~a~~~~ 135 (700)
|++++...
T Consensus 88 v~~a~~~~ 95 (114)
T 2do0_A 88 VKMDERAL 95 (114)
T ss_dssp EEECSCCC
T ss_pred EEEcccCC
Confidence 88876443
No 73
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.67 E-value=1.5e-16 Score=141.61 Aligned_cols=90 Identities=28% Similarity=0.585 Sum_probs=81.7
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
....++|||+||+.++++++|+++|++||.|++|+|++++ ++.++|||||+|++.++|.+|++.||+..++.++++.|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 3456899999999999999999999999999999999986 588999999999999999999999999987776789999
Q ss_pred EEecCCCCCCC
Q 005357 218 VRFADPKRPRP 228 (700)
Q Consensus 218 V~~a~~k~~r~ 228 (700)
|++++++..+.
T Consensus 90 v~~a~~~~~~~ 100 (106)
T 2dgp_A 90 VKPADSESRGG 100 (106)
T ss_dssp EEECCCCSCCC
T ss_pred EEECCcccccC
Confidence 99999876543
No 74
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3e-16 Score=139.02 Aligned_cols=87 Identities=21% Similarity=0.414 Sum_probs=75.2
Q ss_pred CCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccc
Q 005357 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGP 125 (700)
Q Consensus 46 ~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~ 125 (700)
.+....++|||+|||.++++++|+++|+.||.|++|+|++++. .++|||||+|++.++|++||+.|++..+ .+ +.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~ 84 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKI-LG--KE 84 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEE-TT--EE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCc-CC--Ce
Confidence 3456789999999999999999999999999999999999864 3689999999999999999999988665 34 56
Q ss_pred ceeecccccccc
Q 005357 126 IQVRYADGERER 137 (700)
Q Consensus 126 l~V~~a~~~~~~ 137 (700)
|+|++++.....
T Consensus 85 l~V~~a~~~~~~ 96 (103)
T 2cqi_A 85 VKVNWATTPSSQ 96 (103)
T ss_dssp EEEEECCCTTCC
T ss_pred EEEEECCCCccc
Confidence 888888765544
No 75
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.67 E-value=8.1e-17 Score=139.52 Aligned_cols=81 Identities=15% Similarity=0.352 Sum_probs=68.4
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhccC--CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceee
Q 005357 52 AKLFVGSVPKTAREEDIRPLFEEHG--NVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVR 129 (700)
Q Consensus 52 ~tLfVgnLP~~vteedL~elF~~~G--~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~ 129 (700)
.+|||+||++++|+++|+++|+.|| .|.+|+|+.|+.||+++|||||+|++.++|++||+.|++..+ .| +.|+|+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~-~g--r~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL-HG--QNPVVT 78 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCS-SS--CCCEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCee-CC--EEEEEE
Confidence 5899999999999999999999999 999999999999999999999999999999999999988655 44 457888
Q ss_pred cccccc
Q 005357 130 YADGER 135 (700)
Q Consensus 130 ~a~~~~ 135 (700)
++....
T Consensus 79 ~~~~~~ 84 (90)
T 3p5t_L 79 PSNKLE 84 (90)
T ss_dssp CC----
T ss_pred ECCCCc
Confidence 776543
No 76
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.67 E-value=1.7e-16 Score=139.00 Aligned_cols=84 Identities=25% Similarity=0.443 Sum_probs=75.5
Q ss_pred CCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceee
Q 005357 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVR 129 (700)
Q Consensus 50 ~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~ 129 (700)
++++|||+|||.++++++|+++|+.||.|++|+|++++.+|+++|||||+|++.++|++|++.|++..+ .| +.|+|+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~-~g--~~l~V~ 77 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQL-GS--RFLKCG 77 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEE-TT--EECEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeE-CC--eEEEEE
Confidence 368999999999999999999999999999999999999999999999999999999999999988555 44 568888
Q ss_pred ccccccc
Q 005357 130 YADGERE 136 (700)
Q Consensus 130 ~a~~~~~ 136 (700)
+++....
T Consensus 78 ~a~~~~~ 84 (96)
T 2x1f_A 78 YSSNSDI 84 (96)
T ss_dssp ECSCSSG
T ss_pred EcCCCCC
Confidence 8876543
No 77
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.3e-16 Score=139.41 Aligned_cols=85 Identities=33% Similarity=0.613 Sum_probs=78.8
Q ss_pred ccceeeccCCCccccHHHHHHHhcCCCceeEE-EEeeC-CCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 141 ~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v-~I~~d-~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
.+++|||+||+.++++++|+++|+.||.|++| +|+++ .++.++|||||+|++.++|.+|++.||+..+ +++.|+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~v 80 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITV 80 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEE---TTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE---CCEEEEE
Confidence 46799999999999999999999999999999 99988 4788999999999999999999999999998 7999999
Q ss_pred EecCCCCCCC
Q 005357 219 RFADPKRPRP 228 (700)
Q Consensus 219 ~~a~~k~~r~ 228 (700)
+|++++..+.
T Consensus 81 ~~a~~~~~~~ 90 (96)
T 1x5t_A 81 SYAFKKDSKG 90 (96)
T ss_dssp EESCCCCCCC
T ss_pred EEecccCCCC
Confidence 9999876554
No 78
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=5.2e-16 Score=139.95 Aligned_cols=86 Identities=29% Similarity=0.475 Sum_probs=79.5
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
....++|||+||++++++++|+++|++||.|++|+|++++++.++|||||+|++.++|.+|++.||+..+ +++.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v 88 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLL---FDRPMHV 88 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe---CCCEEEE
Confidence 3456899999999999999999999999999999999998899999999999999999999999999988 7999999
Q ss_pred EecCCCCCC
Q 005357 219 RFADPKRPR 227 (700)
Q Consensus 219 ~~a~~k~~r 227 (700)
++++....+
T Consensus 89 ~~a~~~~~~ 97 (114)
T 2do0_A 89 KMDERALPK 97 (114)
T ss_dssp EECSCCCCC
T ss_pred EEcccCCCC
Confidence 999876544
No 79
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.67 E-value=1.8e-16 Score=148.18 Aligned_cols=89 Identities=27% Similarity=0.459 Sum_probs=78.6
Q ss_pred CCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccc
Q 005357 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGP 125 (700)
Q Consensus 46 ~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~ 125 (700)
.+....++|||+||+.+++++||+++|+.||+|++|+|++++.|++++|||||+|++.++|++||+.|++..+ .| +.
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~ 113 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNI-LN--KR 113 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEEC-SS--CE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE-CC--eE
Confidence 3456789999999999999999999999999999999999999999999999999999999999999988554 44 45
Q ss_pred ceeecccccccc
Q 005357 126 IQVRYADGERER 137 (700)
Q Consensus 126 l~V~~a~~~~~~ 137 (700)
|+|++++.+..+
T Consensus 114 l~v~~a~~~~~~ 125 (139)
T 1u6f_A 114 LKVALAASGHQR 125 (139)
T ss_dssp EEEEESSCCCCC
T ss_pred EEEEECCCCCCC
Confidence 888888765544
No 80
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3e-16 Score=138.29 Aligned_cols=85 Identities=24% Similarity=0.415 Sum_probs=79.2
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
....++|||+||++++++++|+++|+.||.|++|+|+.++++.++|||||+|++.++|.+|++.||+..+ +++.|+|
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v 90 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTI---KENIIKV 90 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEES---SSCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEE---CCEEEEE
Confidence 3456799999999999999999999999999999999998889999999999999999999999999887 7899999
Q ss_pred EecCCCCC
Q 005357 219 RFADPKRP 226 (700)
Q Consensus 219 ~~a~~k~~ 226 (700)
++++++..
T Consensus 91 ~~a~~~~~ 98 (100)
T 2do4_A 91 AISNSGPS 98 (100)
T ss_dssp EECCCCSC
T ss_pred EECCCCCC
Confidence 99998754
No 81
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.66 E-value=8.1e-17 Score=142.58 Aligned_cols=84 Identities=18% Similarity=0.332 Sum_probs=74.7
Q ss_pred CCCceEEEeCCCC------CCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCc
Q 005357 49 SSFAKLFVGSVPK------TAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGG 122 (700)
Q Consensus 49 ~~~~tLfVgnLP~------~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~ 122 (700)
..+++|||+|||. ++++++|+++|+.||.|.+|+|++|+.||+++|||||+|++.++|++||+.||+..+ .|
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~-~g- 81 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRL-DL- 81 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBS-SS-
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCccc-CC-
Confidence 4578999999999 999999999999999999999999999999999999999999999999999988665 33
Q ss_pred cccceeeccccc
Q 005357 123 VGPIQVRYADGE 134 (700)
Q Consensus 123 ~~~l~V~~a~~~ 134 (700)
.+.|+|.++...
T Consensus 82 ~r~l~V~~a~~~ 93 (100)
T 3ns6_A 82 KHRLFLYTMKDV 93 (100)
T ss_dssp SCBCEEEESHHH
T ss_pred CeEEEEEECchh
Confidence 146888877543
No 82
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.66 E-value=3e-17 Score=154.53 Aligned_cols=126 Identities=14% Similarity=0.095 Sum_probs=74.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHhcccccCCCccccceeecccccccccCcccceeeccCCCccccHHHHHHHhcCCCceeEE
Q 005357 93 QGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172 (700)
Q Consensus 93 kG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~~a~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v 172 (700)
+|+||.+|+..+.+..++..+... ..+.. .--...+..........++|||+||+++++++||+++|+.|| |++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~--~gg~~--~g~~~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v 75 (139)
T 2hgn_A 1 MGSSHHHHHHSSGLVPRGSHMASM--TGGQQ--MGRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRV 75 (139)
T ss_dssp ------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEE
T ss_pred CCcccccccCccccchhcccchhc--cCCCC--CCCCCCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEE
Confidence 368999999888887777765322 22211 111111122222344567999999999999999999999999 7799
Q ss_pred EEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEecCCCCCC
Q 005357 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227 (700)
Q Consensus 173 ~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~~k~~r 227 (700)
+|++|++++++|||||+|++.++|++|| .+|+..+ +++.|+|.++..+...
T Consensus 76 ~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l---~gR~i~V~~a~~~~~~ 126 (139)
T 2hgn_A 76 HIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANM---QHRYIELFLNSTTGAS 126 (139)
T ss_dssp ECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSS---SSCCCCCEECCCSCC-
T ss_pred EEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEE---CCEEEEEEECCCCCCC
Confidence 9999988999999999999999999999 7898877 7899999999876543
No 83
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=1.7e-16 Score=140.11 Aligned_cols=93 Identities=23% Similarity=0.423 Sum_probs=77.5
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceeecc
Q 005357 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYA 131 (700)
Q Consensus 52 ~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~~a 131 (700)
++|||+|||.++|+++|+++|+.||+|++|+++++ ++|||||+|++.++|++|++.|++..+ .| +.|+|+++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l~V~~a 72 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVI-CG--SRVRVELS 72 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCS-SS--CCCEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeE-CC--cEEEEEEc
Confidence 58999999999999999999999999999999887 678999999999999999999988654 44 44888887
Q ss_pred ccccccc--------CcccceeeccCCCc
Q 005357 132 DGERERL--------GAVEYKLFVGSLNK 152 (700)
Q Consensus 132 ~~~~~~~--------~~~s~~LfV~nLp~ 152 (700)
+...... .....+|||+||+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~ifvg~L~h 101 (101)
T 2hvz_A 73 TGMPRRSRFDRPPARRKLLEVLFNGPLEH 101 (101)
T ss_dssp SSCCCSSCCCSCCCSCCCCSCCCSCCCCC
T ss_pred cCCCCcccCCCCCccccCCCceecCCCCC
Confidence 6544221 12357899999973
No 84
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.66 E-value=6.5e-16 Score=139.65 Aligned_cols=88 Identities=27% Similarity=0.571 Sum_probs=80.7
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
....++|||+||++++++++|+++|+.||.|++|+|+++. ++.++|||||+|++.++|.+|++.||+..+ +++.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~ 88 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL---GGRQIR 88 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEE---TTEECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---CCEEEE
Confidence 4557899999999999999999999999999999999985 789999999999999999999999999988 789999
Q ss_pred EEecCCCCCCCC
Q 005357 218 VRFADPKRPRPG 229 (700)
Q Consensus 218 V~~a~~k~~r~~ 229 (700)
|+|++++..+..
T Consensus 89 V~~a~~~~~~~~ 100 (115)
T 2dgo_A 89 TNWATRKPPAPK 100 (115)
T ss_dssp EEESSCCCCCSC
T ss_pred EEEccCCCCCCc
Confidence 999998765543
No 85
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.3e-16 Score=139.17 Aligned_cols=87 Identities=24% Similarity=0.363 Sum_probs=80.0
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
....++|||+||++++++++|+++|++||.|++|+|+++. ++.++|||||+|++.++|.+|++.||+..+ +++.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~ 88 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKL---YGKPIR 88 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBC---SSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeE---CCeEEE
Confidence 3456899999999999999999999999999999999987 689999999999999999999999999887 799999
Q ss_pred EEecCCCCCCC
Q 005357 218 VRFADPKRPRP 228 (700)
Q Consensus 218 V~~a~~k~~r~ 228 (700)
|++++++..+.
T Consensus 89 v~~a~~~~~~~ 99 (105)
T 1x5u_A 89 VNKASAHNKNL 99 (105)
T ss_dssp EEETTTTSCCC
T ss_pred EEECCCCCcCC
Confidence 99999876543
No 86
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.9e-16 Score=137.31 Aligned_cols=86 Identities=24% Similarity=0.488 Sum_probs=78.4
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
...++|||+||+.++++++|+++|+.||.|++|+|++++ ++.++|||||+|++.++|.+|++ |++..+ +++.|+|
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~---~g~~l~V 83 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDI---MGKKVEV 83 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBS---SSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEE---CCeEEEE
Confidence 456899999999999999999999999999999999886 58899999999999999999998 999887 7999999
Q ss_pred EecCCCCCCCC
Q 005357 219 RFADPKRPRPG 229 (700)
Q Consensus 219 ~~a~~k~~r~~ 229 (700)
++++++..+..
T Consensus 84 ~~a~~~~~~~~ 94 (99)
T 2dgs_A 84 KRAEPRDSKSS 94 (99)
T ss_dssp EECCCCCCCCC
T ss_pred EECCCCcccCC
Confidence 99998765543
No 87
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.66 E-value=2.1e-16 Score=137.78 Aligned_cols=82 Identities=27% Similarity=0.425 Sum_probs=73.2
Q ss_pred CCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccc
Q 005357 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPI 126 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l 126 (700)
.....++|||+|||.++++++|+++|+.||+|++|+|++++. ++++|||||+|++.++|++||+.|++..+ .+ +.|
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l 87 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRL-YG--RPI 87 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEE-TT--EEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEE-CC--CEE
Confidence 345679999999999999999999999999999999999986 99999999999999999999999988665 33 558
Q ss_pred eeeccc
Q 005357 127 QVRYAD 132 (700)
Q Consensus 127 ~V~~a~ 132 (700)
+|++++
T Consensus 88 ~V~~a~ 93 (95)
T 2ywk_A 88 NVSGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEEEcC
Confidence 888765
No 88
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.66 E-value=8.7e-16 Score=150.35 Aligned_cols=84 Identities=21% Similarity=0.383 Sum_probs=74.6
Q ss_pred CCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccc
Q 005357 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPI 126 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l 126 (700)
.....++|||+||+++++++||+++|+.||+|++|+|+.++ +++++|||||+|++.++|++||+.|++..+ .| +.|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l-~G--r~l 159 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPL-DG--RPM 159 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBC-SS--SBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEE-CC--EEE
Confidence 34567999999999999999999999999999999999998 899999999999999999999999988544 44 558
Q ss_pred eeeccccc
Q 005357 127 QVRYADGE 134 (700)
Q Consensus 127 ~V~~a~~~ 134 (700)
+|+++...
T Consensus 160 ~V~~a~~~ 167 (177)
T 2f3j_A 160 DIQLVASQ 167 (177)
T ss_dssp EEEEESSG
T ss_pred EEEEecCC
Confidence 88887654
No 89
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.3e-16 Score=137.44 Aligned_cols=87 Identities=28% Similarity=0.494 Sum_probs=74.7
Q ss_pred CCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccc
Q 005357 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGP 125 (700)
Q Consensus 46 ~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~ 125 (700)
......++|||+|||.++|+++|+++|+.||.|++|+|++++. .++|||||+|++.++|++||+.|++..+ .+ +.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~ 84 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVV-EG--RK 84 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEE-TT--EE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEE-CC--EE
Confidence 3456679999999999999999999999999999999999864 3899999999999999999999988665 44 55
Q ss_pred ceeecccccccc
Q 005357 126 IQVRYADGERER 137 (700)
Q Consensus 126 l~V~~a~~~~~~ 137 (700)
|+|++++.+...
T Consensus 85 l~v~~a~~~~~~ 96 (103)
T 2cq3_A 85 IEVNNATARVMT 96 (103)
T ss_dssp CEEEECCSSCCC
T ss_pred EEEEEcccCCCC
Confidence 888888765443
No 90
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.5e-16 Score=138.97 Aligned_cols=86 Identities=27% Similarity=0.493 Sum_probs=76.4
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEE-EEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEV-ALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i-~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
.+.++|||+|||.++++++|+++|+.||.|++| +|++|+.+++++|||||+|++.++|++||+.|++..+ .+ +.|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~~l~ 79 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL-CN--RPIT 79 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEE-TT--EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE-CC--EEEE
Confidence 457899999999999999999999999999999 9999989999999999999999999999999988665 33 5688
Q ss_pred eecccccccc
Q 005357 128 VRYADGERER 137 (700)
Q Consensus 128 V~~a~~~~~~ 137 (700)
|++++.+...
T Consensus 80 v~~a~~~~~~ 89 (96)
T 1x5t_A 80 VSYAFKKDSK 89 (96)
T ss_dssp EEESCCCCCC
T ss_pred EEEecccCCC
Confidence 8888765443
No 91
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2e-16 Score=140.33 Aligned_cols=87 Identities=28% Similarity=0.423 Sum_probs=80.2
Q ss_pred cccceeeccCCCccccHHHHHHHhcC-CCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCce-eccCCccceE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSP-YGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIY-TMRGCDQPLT 217 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~-fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~-~~~g~gr~L~ 217 (700)
...++|||+||++++++++|+++|+. ||.|++|+|+++.++.++|||||+|++.++|.+|++.|++.. + +++.|+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---~g~~l~ 83 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGL---GSKPVR 83 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSS---SSSCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCccc---CCEeEE
Confidence 45689999999999999999999999 999999999999888999999999999999999999999988 6 789999
Q ss_pred EEecCCCCCCCC
Q 005357 218 VRFADPKRPRPG 229 (700)
Q Consensus 218 V~~a~~k~~r~~ 229 (700)
|++++++..+..
T Consensus 84 v~~a~~~~~~~~ 95 (104)
T 2dhg_A 84 LSVAIPKASRVK 95 (104)
T ss_dssp CCBCCCCCSCCC
T ss_pred EEEccCCCcCCC
Confidence 999988765543
No 92
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.66 E-value=2.4e-17 Score=167.93 Aligned_cols=81 Identities=16% Similarity=0.233 Sum_probs=75.1
Q ss_pred ccceeeccCCCccccHHHHHHHhcCCC--ceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 141 VEYKLFVGSLNKQATEKEVEEIFSPYG--RVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 141 ~s~~LfV~nLp~~~teedL~~~F~~fG--~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
..++|||+||++++++++|+++|++|| .|++|+|++++ ++++||||||+|++.++|.+||+.||+..| +++.|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~---~Gr~l~ 143 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL---HGQNPV 143 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCB---TTBCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeE---CCEEeE
Confidence 457899999999999999999999999 99999999996 789999999999999999999999999988 799999
Q ss_pred EEecCCC
Q 005357 218 VRFADPK 224 (700)
Q Consensus 218 V~~a~~k 224 (700)
|++++++
T Consensus 144 V~~a~~~ 150 (229)
T 3q2s_C 144 VTPVNKQ 150 (229)
T ss_dssp EEECCHH
T ss_pred EEECCCC
Confidence 9999764
No 93
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.5e-16 Score=138.66 Aligned_cols=87 Identities=26% Similarity=0.499 Sum_probs=80.2
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
....++|||+||++++++++|+++|++||.|++|+|++++ ++.++|||||+|++.++|.+|++.||+..+ +++.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~ 88 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGY---DHLILN 88 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEE---TTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCee---CCcEEE
Confidence 4557899999999999999999999999999999999985 689999999999999999999999999988 799999
Q ss_pred EEecCCCCCCC
Q 005357 218 VRFADPKRPRP 228 (700)
Q Consensus 218 V~~a~~k~~r~ 228 (700)
|+|++++..+.
T Consensus 89 v~~a~~~~~~~ 99 (103)
T 2cq0_A 89 VEWAKPSTNSG 99 (103)
T ss_dssp EEESSCCCCSC
T ss_pred EEECCCCCCCC
Confidence 99999876543
No 94
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.3e-16 Score=138.45 Aligned_cols=86 Identities=22% Similarity=0.426 Sum_probs=75.6
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCC---CCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccc
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKK---TGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGP 125 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~---Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~ 125 (700)
.+.++|||+|||.++++++|+++|+.||+|++|+|++++. |++++|||||+|++.++|++||+.|++..+ .+ +.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~ 79 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTV-DG--HK 79 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEE-TT--EE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCee-CC--eE
Confidence 4578999999999999999999999999999999999887 679999999999999999999999988655 34 56
Q ss_pred ceeecccccccc
Q 005357 126 IQVRYADGERER 137 (700)
Q Consensus 126 l~V~~a~~~~~~ 137 (700)
|+|++++.....
T Consensus 80 l~V~~a~~~~~~ 91 (98)
T 2cpf_A 80 LEVRISERATKP 91 (98)
T ss_dssp CEEECSSCSSCC
T ss_pred EEEEEccCCCCC
Confidence 888888765443
No 95
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.66 E-value=4.5e-16 Score=139.85 Aligned_cols=84 Identities=29% Similarity=0.512 Sum_probs=75.4
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
....++|||+|||.++++++|+++|+.||.|++|+|++++.+|+++|||||+|++.++|++||+.|++..+ .| +.|+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i-~g--~~l~ 99 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL-AG--RPMK 99 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCS-SS--SCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEE-CC--EEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999988554 44 5588
Q ss_pred eeccccc
Q 005357 128 VRYADGE 134 (700)
Q Consensus 128 V~~a~~~ 134 (700)
|++++.+
T Consensus 100 V~~a~~k 106 (108)
T 2jrs_A 100 VGHVTER 106 (108)
T ss_dssp EECSCSS
T ss_pred EEEcccC
Confidence 8887654
No 96
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.6e-16 Score=135.71 Aligned_cols=81 Identities=19% Similarity=0.330 Sum_probs=71.9
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccccee
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQV 128 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V 128 (700)
.+.++|||+|||.++++++|+++|+.||.|++|+|+.++.+++++|||||+|++.++|++|++.||+..+ .+ +.+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~~~~ 79 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGV-QA--QMAKQ 79 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTC-CE--ESCCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeE-ee--EEEee
Confidence 4678999999999999999999999999999999999999999999999999999999999999988654 33 44666
Q ss_pred eccc
Q 005357 129 RYAD 132 (700)
Q Consensus 129 ~~a~ 132 (700)
.+++
T Consensus 80 ~~~~ 83 (85)
T 1x4e_A 80 SGPS 83 (85)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 6543
No 97
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=4.6e-16 Score=137.96 Aligned_cols=86 Identities=20% Similarity=0.300 Sum_probs=75.5
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhc-cCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccc
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEE-HGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPI 126 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~-~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l 126 (700)
....++|||+|||.++|+++|+++|+. ||.|++|+|++|+ +++++|||||+|++.++|++||+.|++...+.| +.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g--~~l 82 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGS--KPV 82 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS--SCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCC--EeE
Confidence 456789999999999999999999999 9999999999998 899999999999999999999999988663555 457
Q ss_pred eeeccccccc
Q 005357 127 QVRYADGERE 136 (700)
Q Consensus 127 ~V~~a~~~~~ 136 (700)
+|+++..+..
T Consensus 83 ~v~~a~~~~~ 92 (104)
T 2dhg_A 83 RLSVAIPKAS 92 (104)
T ss_dssp CCCBCCCCCS
T ss_pred EEEEccCCCc
Confidence 8887765443
No 98
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.7e-16 Score=139.26 Aligned_cols=83 Identities=16% Similarity=0.241 Sum_probs=73.8
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
....++|||+|||++++++||+++|+.||.|++++++.++.+++++|||||+|++.++|++||+.|++..+ .+ +.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~-~g--~~l~ 88 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI-GS--RKVK 88 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEE-TT--EECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCee-CC--eEEE
Confidence 45578999999999999999999999999999999999999999999999999999999999999988654 44 5578
Q ss_pred eecccc
Q 005357 128 VRYADG 133 (700)
Q Consensus 128 V~~a~~ 133 (700)
|+++..
T Consensus 89 V~~a~~ 94 (98)
T 2cqp_A 89 LVLGSG 94 (98)
T ss_dssp EEESSC
T ss_pred EEEcCC
Confidence 877653
No 99
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=4.7e-16 Score=138.53 Aligned_cols=87 Identities=28% Similarity=0.435 Sum_probs=79.5
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC--CCCccceEEEEeCCHHHHHHHHHHh-cCceeccCCccc
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE--LKQSRGCGFVKYSHRDMALAAINAL-NGIYTMRGCDQP 215 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~--~g~srG~aFVeF~~~e~A~~Ai~~L-ng~~~~~g~gr~ 215 (700)
....++|||+||++++++++|+++|+.||.|+.|+|+++. ++.++|||||+|++.++|.+|++.| |+..+ +++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~---~g~~ 88 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL---YGRR 88 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS---SSCB
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE---CCCE
Confidence 4557899999999999999999999999999999999883 7889999999999999999999999 89887 7899
Q ss_pred eEEEecCCCCCCC
Q 005357 216 LTVRFADPKRPRP 228 (700)
Q Consensus 216 L~V~~a~~k~~r~ 228 (700)
|+|+|++++....
T Consensus 89 l~v~~a~~~~~~~ 101 (107)
T 2cph_A 89 LVLEWADSEVTVQ 101 (107)
T ss_dssp CEEEECCCCCCCC
T ss_pred EEEEeCCCCCCCC
Confidence 9999999876544
No 100
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.2e-16 Score=140.64 Aligned_cols=85 Identities=26% Similarity=0.370 Sum_probs=77.0
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
....++|||+||++++++++|+++|++||.|++|+|++++ ++.++|||||+|++.++|.+|++.+++ .+ +++.|+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~---~g~~l~ 89 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-II---DGRKAN 89 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EE---TTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cC---CCEEEE
Confidence 4457899999999999999999999999999999999986 588999999999999999999999998 66 789999
Q ss_pred EEecCCCCCC
Q 005357 218 VRFADPKRPR 227 (700)
Q Consensus 218 V~~a~~k~~r 227 (700)
|++++.+...
T Consensus 90 V~~a~~~~~~ 99 (116)
T 2cqd_A 90 VNLAYLGAKP 99 (116)
T ss_dssp EEESTTTCCC
T ss_pred EEEcccCCCc
Confidence 9999876433
No 101
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.66 E-value=2.2e-16 Score=143.42 Aligned_cols=83 Identities=27% Similarity=0.472 Sum_probs=75.3
Q ss_pred cceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEec
Q 005357 142 EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221 (700)
Q Consensus 142 s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a 221 (700)
+.+|||+||++++++++|+++|++||.|++|+|++++. .+||||||+|++.++|.+||+.|++..+ +|+.|+|+++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-~~kg~afV~f~~~~~A~~Ai~~l~~~~~---~g~~i~V~~a 80 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLL---NDRKVFVGRF 80 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESCHHHHHHHHHHHTTCEE---TTEECEEEES
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-CCCceEEEEECCHHHHHHHHHHcCCCEE---CCEEEEEEEC
Confidence 46899999999999999999999999999999998854 4799999999999999999999999988 7999999999
Q ss_pred CCCCCCC
Q 005357 222 DPKRPRP 228 (700)
Q Consensus 222 ~~k~~r~ 228 (700)
+++..+.
T Consensus 81 ~~~~~~~ 87 (115)
T 4f25_A 81 KSRKERE 87 (115)
T ss_dssp SCCCC--
T ss_pred CCccccc
Confidence 8875543
No 102
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.3e-16 Score=139.40 Aligned_cols=87 Identities=26% Similarity=0.478 Sum_probs=79.8
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
...++|||+||++++++++|+++|+.||.|++|+|+++. ++.++|||||+|++.++|.+|++.||+..+ +++.|+|
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~V 86 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL---FGRTIRV 86 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEE---TTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---CCcEEEE
Confidence 456899999999999999999999999999999999885 588999999999999999999999999988 7999999
Q ss_pred EecCCCCCCCC
Q 005357 219 RFADPKRPRPG 229 (700)
Q Consensus 219 ~~a~~k~~r~~ 229 (700)
+|++++..+..
T Consensus 87 ~~a~~~~~~~~ 97 (102)
T 2cqb_A 87 NLAKPMRIKES 97 (102)
T ss_dssp EECCCCCCCCC
T ss_pred EeCCCCCCCCC
Confidence 99998765543
No 103
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.66 E-value=3.2e-16 Score=141.50 Aligned_cols=82 Identities=15% Similarity=0.192 Sum_probs=76.9
Q ss_pred ccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEE
Q 005357 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219 (700)
Q Consensus 141 ~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~ 219 (700)
..++|||+||++++++++|+++|++||.|++|+|++|. +++++|||||+|++.++|.+|++.|||..+ +++.|+|+
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~---~gr~i~V~ 81 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSV---MGNIIHAQ 81 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEE---CCeEEEEE
Confidence 46799999999999999999999999999999999987 489999999999999999999999999998 79999999
Q ss_pred ecCCCC
Q 005357 220 FADPKR 225 (700)
Q Consensus 220 ~a~~k~ 225 (700)
++..++
T Consensus 82 ~a~~~~ 87 (110)
T 3s8s_A 82 LDIKGQ 87 (110)
T ss_dssp ECSTTH
T ss_pred ECCCCc
Confidence 997654
No 104
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.65 E-value=2.8e-16 Score=140.90 Aligned_cols=86 Identities=28% Similarity=0.383 Sum_probs=76.8
Q ss_pred CCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccc
Q 005357 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPI 126 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l 126 (700)
...+.++|||+|||.++|+++|+++|+.||.|++|+|+.++.+|+++|||||+|.+.++|++||+.|++..+ .| +.|
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~-~g--~~l 98 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI-MG--QTI 98 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEE-TT--EEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE-CC--cEE
Confidence 346679999999999999999999999999999999999999999999999999999999999999988655 34 568
Q ss_pred eeecccccc
Q 005357 127 QVRYADGER 135 (700)
Q Consensus 127 ~V~~a~~~~ 135 (700)
+|++++.+.
T Consensus 99 ~V~~a~~~~ 107 (110)
T 1oo0_B 99 QVDWCFVKG 107 (110)
T ss_dssp EEEESEESS
T ss_pred EEEEcccCC
Confidence 888876544
No 105
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=7.4e-16 Score=136.53 Aligned_cols=87 Identities=21% Similarity=0.347 Sum_probs=79.2
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
....++|||+||++++++++|+++|++||.|++|+|+++..+ ++|||||+|++.++|.+|++.||+..+ +++.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v 87 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVV---EGRKIEV 87 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEE---CCEEEEE
Confidence 445689999999999999999999999999999999988655 899999999999999999999999988 7999999
Q ss_pred EecCCCCCCCC
Q 005357 219 RFADPKRPRPG 229 (700)
Q Consensus 219 ~~a~~k~~r~~ 229 (700)
++++++..+..
T Consensus 88 ~~a~~~~~~~~ 98 (103)
T 2cq3_A 88 NNATARVMTNS 98 (103)
T ss_dssp EECCSSCCCCC
T ss_pred EEcccCCCCCC
Confidence 99998765543
No 106
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1e-15 Score=138.12 Aligned_cols=85 Identities=15% Similarity=0.451 Sum_probs=74.0
Q ss_pred CCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCC-----
Q 005357 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPG----- 121 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g----- 121 (700)
.....++|||+|||.++|+++|+++|+.||.|++|+|++++ +++++|||||+|++.++|++||+.||+..+...
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34567999999999999999999999999999999999998 899999999999999999999999988665321
Q ss_pred ccccceeeccc
Q 005357 122 GVGPIQVRYAD 132 (700)
Q Consensus 122 ~~~~l~V~~a~ 132 (700)
..+.|.|++++
T Consensus 100 ~~~~l~v~~a~ 110 (114)
T 1x5o_A 100 PTEPLLCKFSG 110 (114)
T ss_dssp CSSCBEEEECC
T ss_pred CCCceeEEccC
Confidence 23557777765
No 107
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3.6e-16 Score=138.55 Aligned_cols=87 Identities=30% Similarity=0.424 Sum_probs=79.3
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
...++|||+||++++++++|+++|+.||.|++|+|+++. ++.++|||||+|++.++|.+|++.||+..+ +++.|+|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~V 87 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAEL---DGRELRV 87 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCB---TTBCCEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEE---CCcEEEE
Confidence 456899999999999999999999999999999999886 488999999999999999999999999988 7999999
Q ss_pred EecCCCCCCCC
Q 005357 219 RFADPKRPRPG 229 (700)
Q Consensus 219 ~~a~~k~~r~~ 229 (700)
++++.+..+..
T Consensus 88 ~~a~~~~~~~~ 98 (103)
T 2dnm_A 88 QVARYGRRDLS 98 (103)
T ss_dssp EECSSCCSCCC
T ss_pred EECCcCCCCCC
Confidence 99998755443
No 108
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.65 E-value=2.6e-16 Score=144.66 Aligned_cols=88 Identities=28% Similarity=0.493 Sum_probs=80.2
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
....++|||+||++++++++|+++|+.||.|++|.|+.+. ++.++|||||+|++.++|.+|++.||+..+ +++.|+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~ 95 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL---MGQPIS 95 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBS---SSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCee---CCeEEE
Confidence 3456799999999999999999999999999999999886 788999999999999999999999999988 799999
Q ss_pred EEecCCCCCCCC
Q 005357 218 VRFADPKRPRPG 229 (700)
Q Consensus 218 V~~a~~k~~r~~ 229 (700)
|+|+.++..+..
T Consensus 96 v~~a~~~~~~~~ 107 (126)
T 3ex7_B 96 VDWCFVRGPPKG 107 (126)
T ss_dssp EEESEESSSCCC
T ss_pred EEEecCCCCCCC
Confidence 999988765543
No 109
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.1e-15 Score=137.03 Aligned_cols=84 Identities=19% Similarity=0.417 Sum_probs=72.4
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
....++|||+|||.++|+++|+++|+.||.|++|+|+.+ +.++|||||+|++.++|++||+.|++..+ .+ +.|+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~~l~ 92 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDY-DG--YRLR 92 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEE-TT--EECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEE-CC--eEEE
Confidence 456799999999999999999999999999999999654 56899999999999999999999988655 44 5688
Q ss_pred eecccccccc
Q 005357 128 VRYADGERER 137 (700)
Q Consensus 128 V~~a~~~~~~ 137 (700)
|++++..+..
T Consensus 93 V~~a~~~~~~ 102 (109)
T 1x4a_A 93 VEFPRSGRGT 102 (109)
T ss_dssp EECCCCCCCC
T ss_pred EEEcccCCCC
Confidence 8888765543
No 110
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.65 E-value=2e-16 Score=146.85 Aligned_cols=86 Identities=23% Similarity=0.364 Sum_probs=74.8
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeE--EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhccc---ccCCCc
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIE--VALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQ---HTLPGG 122 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~--i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~---~~~~g~ 122 (700)
....++|||+||++++||++|+++|+.||.|.. |+|++|+.||++||||||+|++. +|++||+.|++. ..++|
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g- 97 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG- 97 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC-
Confidence 456789999999999999999999999999976 99999999999999999999999 999999999886 13333
Q ss_pred cccceeeccccccc
Q 005357 123 VGPIQVRYADGERE 136 (700)
Q Consensus 123 ~~~l~V~~a~~~~~ 136 (700)
+.|+|++++..+.
T Consensus 98 -r~l~V~~a~~~~~ 110 (131)
T 2m2b_A 98 -KTINVEFAKGSKR 110 (131)
T ss_dssp -CCCCCEECCCSCC
T ss_pred -EEEEEEECCCCCC
Confidence 5578888866543
No 111
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.65 E-value=4.9e-16 Score=141.40 Aligned_cols=85 Identities=28% Similarity=0.551 Sum_probs=75.3
Q ss_pred CCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccc
Q 005357 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPI 126 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l 126 (700)
+....++|||+|||.++|+++|+++|+.||.|++|+|+.++ +++++|||||+|++.++|++||+.|++..+ .| +.|
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~-~g--~~l 78 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSL-HG--KAI 78 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBC-SS--SBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEE-CC--EEE
Confidence 35667899999999999999999999999999999999998 899999999999999999999999988554 44 458
Q ss_pred eeecccccc
Q 005357 127 QVRYADGER 135 (700)
Q Consensus 127 ~V~~a~~~~ 135 (700)
+|++++...
T Consensus 79 ~V~~a~~~~ 87 (116)
T 2fy1_A 79 KVEQAKKPS 87 (116)
T ss_dssp EEEECCCSS
T ss_pred EEEECCCCC
Confidence 888886543
No 112
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.7e-16 Score=137.61 Aligned_cols=85 Identities=25% Similarity=0.439 Sum_probs=77.8
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCC--CCccceEEEEeCCHHHHHHHHHHhcCceeccCCccce
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDEL--KQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPL 216 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~--g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L 216 (700)
....++|||+||++++++++|+++|+.|| |++|+|++++. +.++|||||+|++.++|.+|+ .||+..+ +++.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~---~g~~l 86 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL---GNKRI 86 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEE---TTEEC
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEe---CCcEE
Confidence 34568999999999999999999999999 99999998874 889999999999999999999 9999988 79999
Q ss_pred EEEecCCCCCCC
Q 005357 217 TVRFADPKRPRP 228 (700)
Q Consensus 217 ~V~~a~~k~~r~ 228 (700)
+|++++++..+.
T Consensus 87 ~V~~a~~~~~~~ 98 (104)
T 1wi8_A 87 RVDVADQAQDKD 98 (104)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEccCCCCCC
Confidence 999999876554
No 113
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.4e-16 Score=141.10 Aligned_cols=86 Identities=33% Similarity=0.594 Sum_probs=76.3
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
....++|||+|||.++++++|+++|+.||.|++|+|++++.+|+++|||||+|++.++|++|++.|++..+ .| +.|+
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l~ 81 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF-SG--RALR 81 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSC-SS--SCBE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCee-CC--cEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999987555 44 5588
Q ss_pred eeccccccc
Q 005357 128 VRYADGERE 136 (700)
Q Consensus 128 V~~a~~~~~ 136 (700)
|++++....
T Consensus 82 v~~a~~~~~ 90 (104)
T 1p1t_A 82 VDNAASEKN 90 (104)
T ss_dssp EEETTCTTH
T ss_pred EEeCCCccc
Confidence 888876543
No 114
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.3e-16 Score=144.14 Aligned_cols=85 Identities=22% Similarity=0.428 Sum_probs=75.2
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
....++|||+||+.++++++|+++|+.||.|++|+|+.|+.|++++|||||+|++.++|++|| .|++..+ .| +.|+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~-~g--~~l~ 97 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRL-LG--VPII 97 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEE-TT--EEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEe-CC--eEEE
Confidence 446789999999999999999999999999999999999999999999999999999999999 8987555 44 5588
Q ss_pred eeccccccc
Q 005357 128 VRYADGERE 136 (700)
Q Consensus 128 V~~a~~~~~ 136 (700)
|++++.+..
T Consensus 98 V~~a~~~~~ 106 (114)
T 2cq4_A 98 VQASQAEKN 106 (114)
T ss_dssp EEEHHHHHH
T ss_pred EEecCCCcc
Confidence 888765543
No 115
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.9e-16 Score=138.81 Aligned_cols=86 Identities=34% Similarity=0.539 Sum_probs=78.9
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
...++|||+||++++++++|+++|+.||.|++|+|+++. ++.++|||||+|++.++|.+|++.||+..+ +++.|+|
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~v 86 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV---DGRQIRV 86 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCT---TSCCCEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE---CCeEEEE
Confidence 456899999999999999999999999999999999886 578999999999999999999999999987 7899999
Q ss_pred EecCCCCCCC
Q 005357 219 RFADPKRPRP 228 (700)
Q Consensus 219 ~~a~~k~~r~ 228 (700)
++++++..++
T Consensus 87 ~~a~~~~~~~ 96 (102)
T 1x5s_A 87 DQAGKSSDNR 96 (102)
T ss_dssp EEEECCCCCC
T ss_pred EECCCCCCCC
Confidence 9998876543
No 116
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=5e-16 Score=136.22 Aligned_cols=85 Identities=26% Similarity=0.397 Sum_probs=77.4
Q ss_pred ccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCC--C--CccceEEEEeCCHHHHHHHHHHhcCceeccCCccce
Q 005357 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDEL--K--QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPL 216 (700)
Q Consensus 141 ~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~--g--~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L 216 (700)
..++|||+||++++++++|+++|++||.|++|+|+++.. + .++|||||+|++.++|.+|++.||+..+ +++.|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l 80 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTV---DGHKL 80 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEE---TTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCee---CCeEE
Confidence 467999999999999999999999999999999998753 3 7899999999999999999999999988 79999
Q ss_pred EEEecCCCCCCC
Q 005357 217 TVRFADPKRPRP 228 (700)
Q Consensus 217 ~V~~a~~k~~r~ 228 (700)
+|++++++..+.
T Consensus 81 ~V~~a~~~~~~~ 92 (98)
T 2cpf_A 81 EVRISERATKPA 92 (98)
T ss_dssp EEECSSCSSCCC
T ss_pred EEEEccCCCCCC
Confidence 999998875543
No 117
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7.9e-16 Score=137.86 Aligned_cols=84 Identities=24% Similarity=0.424 Sum_probs=75.7
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
....++|||+||++++++++|+++|++||.|++|+|..+ +.++|||||+|++.++|.+|++.||+..+ +++.|+|
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~V 93 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDY---DGYRLRV 93 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEE---CCeEEEE
Confidence 345689999999999999999999999999999999654 45799999999999999999999999988 7999999
Q ss_pred EecCCCCCC
Q 005357 219 RFADPKRPR 227 (700)
Q Consensus 219 ~~a~~k~~r 227 (700)
+|++++..+
T Consensus 94 ~~a~~~~~~ 102 (109)
T 1x4a_A 94 EFPRSGRGT 102 (109)
T ss_dssp ECCCCCCCC
T ss_pred EEcccCCCC
Confidence 999886543
No 118
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7.3e-16 Score=136.54 Aligned_cols=87 Identities=22% Similarity=0.356 Sum_probs=78.4
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
....++|||+||++++++++|+++|+.||.|++|+|+++..+ ++|||||+|++.++|.+|++.||+..+ +++.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~V 87 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKI---LGKEVKV 87 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEE---TTEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCc---CCCeEEE
Confidence 345689999999999999999999999999999999988544 689999999999999999999999988 7899999
Q ss_pred EecCCCCCCCC
Q 005357 219 RFADPKRPRPG 229 (700)
Q Consensus 219 ~~a~~k~~r~~ 229 (700)
+|++++..+..
T Consensus 88 ~~a~~~~~~~~ 98 (103)
T 2cqi_A 88 NWATTPSSQKS 98 (103)
T ss_dssp EECCCTTCCCC
T ss_pred EECCCCccccc
Confidence 99998765443
No 119
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.64 E-value=9.2e-17 Score=139.91 Aligned_cols=83 Identities=28% Similarity=0.427 Sum_probs=74.0
Q ss_pred cceeeccCCCccccHHHHHHHhcCCC-ceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEE
Q 005357 142 EYKLFVGSLNKQATEKEVEEIFSPYG-RVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219 (700)
Q Consensus 142 s~~LfV~nLp~~~teedL~~~F~~fG-~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~ 219 (700)
+++|||+|||+++|++||+++|+.|| .|++|+|++++ ++.+||||||+|++.++|.+|++.+++...+ +|+.|+|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~--~gr~i~V~ 78 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNI--LGQKVSMH 78 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEE--TTEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEE--CCEEEEEE
Confidence 46899999999999999999999999 89999999886 5899999999999999999999988654433 68999999
Q ss_pred ecCCCCC
Q 005357 220 FADPKRP 226 (700)
Q Consensus 220 ~a~~k~~ 226 (700)
|++++..
T Consensus 79 ~a~~~~~ 85 (91)
T 2lxi_A 79 YSDPKPK 85 (91)
T ss_dssp CCCSCCC
T ss_pred EcCCCCC
Confidence 9988754
No 120
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.64 E-value=6.7e-16 Score=130.96 Aligned_cols=81 Identities=27% Similarity=0.481 Sum_probs=76.0
Q ss_pred cceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEe
Q 005357 142 EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220 (700)
Q Consensus 142 s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~ 220 (700)
+++|||+||+.++++++|+++|+.||.|++|+|+++. ++.++|||||+|++.++|.+|++.|||..+ +|+.|+|++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~---~g~~l~v~~ 77 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL---NGRPLRINW 77 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE---TTEECEEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCee---CCcEEEEEe
Confidence 3689999999999999999999999999999999884 688999999999999999999999999998 799999999
Q ss_pred cCCCC
Q 005357 221 ADPKR 225 (700)
Q Consensus 221 a~~k~ 225 (700)
++++.
T Consensus 78 a~~~~ 82 (83)
T 3md1_A 78 AAKLE 82 (83)
T ss_dssp CCCCC
T ss_pred cCcCC
Confidence 98764
No 121
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=8e-16 Score=137.93 Aligned_cols=88 Identities=18% Similarity=0.370 Sum_probs=79.7
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhc------CceeccC
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALN------GIYTMRG 211 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Ln------g~~~~~g 211 (700)
....++|||+||++++++++|+++|+.||.|++|+|+++. ++.++|||||+|++.++|.+|++.|| +..+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~--- 88 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL--- 88 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES---
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE---
Confidence 3456799999999999999999999999999999999886 57899999999999999999999999 8877
Q ss_pred CccceEEEecCCCCCCCC
Q 005357 212 CDQPLTVRFADPKRPRPG 229 (700)
Q Consensus 212 ~gr~L~V~~a~~k~~r~~ 229 (700)
+++.|+|+|+.++..+..
T Consensus 89 ~g~~l~v~~a~~~~~~~~ 106 (111)
T 1x4h_A 89 DGRQLKVDLAVTRDEAAS 106 (111)
T ss_dssp SSCEEEEECCCCCCCCCC
T ss_pred cCEEEEEEECCCCccCCC
Confidence 799999999998765543
No 122
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.1e-15 Score=135.40 Aligned_cols=87 Identities=22% Similarity=0.395 Sum_probs=74.7
Q ss_pred CCCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccc
Q 005357 45 LVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVG 124 (700)
Q Consensus 45 ~~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~ 124 (700)
.......++|||+|||.++++++|+++|+.||.|++|+|+.++.+++++|||||+|++.++|++||+. + ..+.| +
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~-~~~~g--~ 83 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--R-HMIDG--R 83 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--C-EEETT--E
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--C-CeeCC--e
Confidence 33456778999999999999999999999999999999999999999999999999999999999984 3 44554 4
Q ss_pred cceeeccccccc
Q 005357 125 PIQVRYADGERE 136 (700)
Q Consensus 125 ~l~V~~a~~~~~ 136 (700)
.|+|+++..+..
T Consensus 84 ~l~v~~a~~~~~ 95 (103)
T 2cqg_A 84 WCDCKLPNSKQS 95 (103)
T ss_dssp EEEEECCCTTCC
T ss_pred EEEEEecCCCCc
Confidence 578888765543
No 123
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.64 E-value=1.7e-16 Score=138.24 Aligned_cols=81 Identities=15% Similarity=0.216 Sum_probs=71.3
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccccee
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQV 128 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V 128 (700)
...++|||+|||+++|++||+++|+.||.|++|+++.++.+++++|||||+|++.++|++||+.|++..+ .+ +.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~-~g--r~l~v 89 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI-GS--RKVKL 89 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE-TT--EECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeE-CC--cEEEE
Confidence 3468999999999999999999999999999999999999999999999999999999999999988655 34 45777
Q ss_pred eccc
Q 005357 129 RYAD 132 (700)
Q Consensus 129 ~~a~ 132 (700)
+++.
T Consensus 90 ~~a~ 93 (95)
T 2ek1_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred Eecc
Confidence 7654
No 124
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.64 E-value=8.1e-16 Score=143.37 Aligned_cols=83 Identities=20% Similarity=0.416 Sum_probs=73.2
Q ss_pred CCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccc
Q 005357 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGP 125 (700)
Q Consensus 46 ~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~ 125 (700)
......++|||+|||.++++++|+++|+.||+|++|+|++++.+++++|||||+|++.++|++||+.|++..+ .| +.
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~ 134 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL-FG--RT 134 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEE-TT--EE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEE-CC--EE
Confidence 3456789999999999999999999999999999999999999999999999999999999999999987554 44 45
Q ss_pred ceeecc
Q 005357 126 IQVRYA 131 (700)
Q Consensus 126 l~V~~a 131 (700)
|+|+++
T Consensus 135 l~v~~A 140 (140)
T 2ku7_A 135 IRVNLA 140 (140)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 777654
No 125
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.63 E-value=6.1e-16 Score=132.41 Aligned_cols=81 Identities=27% Similarity=0.551 Sum_probs=74.6
Q ss_pred ccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEE
Q 005357 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219 (700)
Q Consensus 141 ~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~ 219 (700)
..++|||+||+.++++++|+++|+.||.|++|+|+++. ++.++|||||+|++.++|.+|++.||+..+ +++.|+|+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~v~ 81 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL---GGRQIRTN 81 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE---CCeEEEEE
Confidence 46799999999999999999999999999999999985 788999999999999999999999999988 79999999
Q ss_pred ecCCC
Q 005357 220 FADPK 224 (700)
Q Consensus 220 ~a~~k 224 (700)
|++++
T Consensus 82 ~a~~k 86 (87)
T 3bs9_A 82 WATRK 86 (87)
T ss_dssp EEC--
T ss_pred ecCCC
Confidence 99875
No 126
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.63 E-value=3e-16 Score=146.77 Aligned_cols=87 Identities=22% Similarity=0.385 Sum_probs=77.3
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
....++|||+|||.++|+++|+++|+.||.|++|+|++++.+++++|||||+|++.++|++||+.|++..+ .| +.|+
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i-~g--~~l~ 120 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL-DG--RELR 120 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCS-SS--SCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE-CC--EEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999988654 44 5688
Q ss_pred eecccccccc
Q 005357 128 VRYADGERER 137 (700)
Q Consensus 128 V~~a~~~~~~ 137 (700)
|++++..+..
T Consensus 121 V~~a~~~~~~ 130 (135)
T 2lea_A 121 VQMARYGRPP 130 (135)
T ss_dssp EEECCCCCCC
T ss_pred EEECCCCCCC
Confidence 8888765443
No 127
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.63 E-value=5.2e-16 Score=148.88 Aligned_cols=82 Identities=20% Similarity=0.352 Sum_probs=72.5
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccC--CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccc
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHG--NVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPI 126 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G--~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l 126 (700)
...++|||+||++++|+++|+++|+.|| .|++|+|+.|+.||+++|||||+|++.++|++||+.|++..+ .| +.|
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~-~G--r~l 129 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVL-NG--EKV 129 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEE-TT--EEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE-CC--eEe
Confidence 3568999999999999999999999999 999999999999999999999999999999999999988655 44 558
Q ss_pred eeecccc
Q 005357 127 QVRYADG 133 (700)
Q Consensus 127 ~V~~a~~ 133 (700)
+|+++..
T Consensus 130 ~V~~a~~ 136 (156)
T 3n9u_C 130 DVRPATR 136 (156)
T ss_dssp EEEECCH
T ss_pred EEEEcCC
Confidence 8887754
No 128
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.63 E-value=7.7e-16 Score=141.45 Aligned_cols=87 Identities=32% Similarity=0.429 Sum_probs=76.6
Q ss_pred CCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccc
Q 005357 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGP 125 (700)
Q Consensus 46 ~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~ 125 (700)
....+.++|||+||+.++|+++|+++|+.||.|++|+|+.++.++.++|||||+|.+.++|++||+.|++..+ .| +.
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~ 93 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL-MG--QP 93 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBS-SS--SB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCee-CC--eE
Confidence 3445689999999999999999999999999999999999999999999999999999999999999988555 44 45
Q ss_pred ceeecccccc
Q 005357 126 IQVRYADGER 135 (700)
Q Consensus 126 l~V~~a~~~~ 135 (700)
|+|+++..+.
T Consensus 94 l~v~~a~~~~ 103 (126)
T 3ex7_B 94 ISVDWCFVRG 103 (126)
T ss_dssp CEEEESEESS
T ss_pred EEEEEecCCC
Confidence 8888876543
No 129
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=1.2e-15 Score=135.25 Aligned_cols=85 Identities=22% Similarity=0.444 Sum_probs=77.3
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
....++|||+||++++++++|+++|+.|| |++|+|++++ ++.++|||||+|++.++|.+|+ .||+..+ +++.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~---~g~~l~ 86 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALL---GDRSLR 86 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEE---TTEECE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeE---CCeEEE
Confidence 45578999999999999999999999996 9999999987 5889999999999999999999 8999988 799999
Q ss_pred EEecCCCCCCC
Q 005357 218 VRFADPKRPRP 228 (700)
Q Consensus 218 V~~a~~k~~r~ 228 (700)
|++++++..+.
T Consensus 87 V~~a~~~~~~~ 97 (103)
T 2dng_A 87 VDIAEGRKQDK 97 (103)
T ss_dssp EEECCCCCCCC
T ss_pred EEEecCCCCCC
Confidence 99999875443
No 130
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.63 E-value=1.2e-15 Score=131.99 Aligned_cols=83 Identities=25% Similarity=0.467 Sum_probs=72.7
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
....++|||+|||.++++++|+++|+.||.|++|+|+++ +++++|||||+|++.++|++||+.|++..+ .+ +.|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~-~g--~~l~ 79 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKL-SG--REID 79 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCB-TT--BCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEE-CC--cEEE
Confidence 346789999999999999999999999999999999984 789999999999999999999999988554 44 4588
Q ss_pred eecccccc
Q 005357 128 VRYADGER 135 (700)
Q Consensus 128 V~~a~~~~ 135 (700)
|++++...
T Consensus 80 v~~a~~~~ 87 (92)
T 2dgv_A 80 VRIDRNAS 87 (92)
T ss_dssp CEECSCCS
T ss_pred EEEcCCCC
Confidence 88876544
No 131
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.63 E-value=9e-16 Score=146.49 Aligned_cols=87 Identities=23% Similarity=0.401 Sum_probs=77.3
Q ss_pred CCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccc
Q 005357 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGP 125 (700)
Q Consensus 46 ~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~ 125 (700)
......++|||+|||.++|+++|+++|+.||+|++|+|+.++.|++++|||||+|++.++|++||+.|++..+ .+ +.
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~-~g--~~ 110 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRL-DD--RI 110 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEE-TT--EE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE-CC--eE
Confidence 3445789999999999999999999999999999999999999999999999999999999999999988655 33 56
Q ss_pred ceeecccccc
Q 005357 126 IQVRYADGER 135 (700)
Q Consensus 126 l~V~~a~~~~ 135 (700)
|+|++++...
T Consensus 111 l~V~~a~~~~ 120 (156)
T 1h2v_Z 111 IRTDWDAGFK 120 (156)
T ss_dssp CEEEEESCCC
T ss_pred EEEEECCCCC
Confidence 8888887543
No 132
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.5e-16 Score=138.79 Aligned_cols=87 Identities=24% Similarity=0.327 Sum_probs=79.2
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCcee--------EEEEeeC-CCCCccceEEEEeCCHHHHHHHHHHhcCceec
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE--------DVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTM 209 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~--------~v~I~~d-~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~ 209 (700)
....++|||+||++++++++|+++|+.||.|+ .|+|+.+ .++.++|||||+|++.++|.+|++.||+..+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~- 90 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF- 90 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE-
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc-
Confidence 34568999999999999999999999999999 6999988 4689999999999999999999999999988
Q ss_pred cCCccceEEEecCCCCCCC
Q 005357 210 RGCDQPLTVRFADPKRPRP 228 (700)
Q Consensus 210 ~g~gr~L~V~~a~~k~~r~ 228 (700)
+++.|+|++++++..+.
T Consensus 91 --~g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 91 --QGSKLKVSLARKKPPMN 107 (113)
T ss_dssp --TTEECEEECSSCCCCST
T ss_pred --CCCEEEEEECCCCCCCC
Confidence 79999999999876543
No 133
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.63 E-value=1e-15 Score=136.49 Aligned_cols=82 Identities=21% Similarity=0.387 Sum_probs=73.2
Q ss_pred CCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccc
Q 005357 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPI 126 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l 126 (700)
.....++|||+|||.++|+++|+++|+.||.|++|+|+.++ +++++|||||+|++.++|++||+.|++..+ .| +.|
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l 100 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPL-DG--RPM 100 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEE-TT--EEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEe-CC--cEE
Confidence 34678999999999999999999999999999999999998 899999999999999999999999988665 44 457
Q ss_pred eeeccc
Q 005357 127 QVRYAD 132 (700)
Q Consensus 127 ~V~~a~ 132 (700)
+|+++.
T Consensus 101 ~V~~a~ 106 (107)
T 3ulh_A 101 NIQLVT 106 (107)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 777654
No 134
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.3e-16 Score=143.97 Aligned_cols=82 Identities=17% Similarity=0.221 Sum_probs=71.1
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
....++|||+|||+++|++||+++|+.||.|.++.++.+..+|+++|||||+|++.++|++||+ |++.. +.+ +.|+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~-~~g--r~i~ 97 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQY-MGN--RFIQ 97 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBC-STT--SCBE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCe-ECC--cEEE
Confidence 4567899999999999999999999999999997777777899999999999999999999999 87744 444 4577
Q ss_pred eecccc
Q 005357 128 VRYADG 133 (700)
Q Consensus 128 V~~a~~ 133 (700)
|.++..
T Consensus 98 V~~a~~ 103 (124)
T 1wel_A 98 VHPITK 103 (124)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 777654
No 135
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.1e-15 Score=136.94 Aligned_cols=81 Identities=20% Similarity=0.332 Sum_probs=73.8
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCc-----c
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCD-----Q 214 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~g-----r 214 (700)
...++|||+||+++++++||+++|++||.|++|+|+.+ |||||+|++.++|.+||+.||+..+ ++ +
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~---~g~~~~~~ 83 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKF---RSHEGETA 83 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEE---ECTTSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCc---cCCcCcce
Confidence 44689999999999999999999999999999999876 8999999999999999999999988 56 9
Q ss_pred ceEEEecCCCCCCCC
Q 005357 215 PLTVRFADPKRPRPG 229 (700)
Q Consensus 215 ~L~V~~a~~k~~r~~ 229 (700)
.|+|++++++.....
T Consensus 84 ~i~V~~a~~~~~~~~ 98 (108)
T 1x4c_A 84 YIRVKVDGPRSPSYG 98 (108)
T ss_dssp EEEEEESSCCSCCCC
T ss_pred EEEEEeCCCCCCCCC
Confidence 999999999765543
No 136
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.63 E-value=7.2e-16 Score=132.19 Aligned_cols=81 Identities=22% Similarity=0.493 Sum_probs=70.2
Q ss_pred CCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccc
Q 005357 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPI 126 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l 126 (700)
+....++|||+|||.++++++|+++|+.||.|++|+|++++.||+++|||||+|++.++|++|++. ++.. +.|+ .|
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~-~~g~--~i 82 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHR-LDGR--VI 82 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEE-ETTE--EE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCE-ECCE--EE
Confidence 356789999999999999999999999999999999999999999999999999999999999975 4543 5554 46
Q ss_pred eeecc
Q 005357 127 QVRYA 131 (700)
Q Consensus 127 ~V~~a 131 (700)
+|+++
T Consensus 83 ~v~~A 87 (87)
T 3s7r_A 83 DPKKA 87 (87)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 66543
No 137
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.63 E-value=5.5e-16 Score=132.85 Aligned_cols=82 Identities=13% Similarity=0.373 Sum_probs=72.5
Q ss_pred CCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCC-cccEEEEEeCCHHHHHHHHHHhcccccCCCcccccee
Q 005357 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQ-QQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQV 128 (700)
Q Consensus 50 ~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~-skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V 128 (700)
..++|||+|||.++|+++|+++|+.||.|.+|+|+.++.++. ++|||||+|++.++|++|++.|++..+ .| +.|+|
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l~v 79 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQI-DG--QEITA 79 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEE-TT--EECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeE-CC--eEEEE
Confidence 468999999999999999999999999999999999988766 999999999999999999999988665 34 45788
Q ss_pred eccccc
Q 005357 129 RYADGE 134 (700)
Q Consensus 129 ~~a~~~ 134 (700)
+++...
T Consensus 80 ~~a~~~ 85 (88)
T 4a8x_A 80 TAVLAP 85 (88)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 877544
No 138
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.2e-15 Score=135.85 Aligned_cols=81 Identities=20% Similarity=0.298 Sum_probs=69.5
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeE-EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccc
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIE-VALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPI 126 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~-i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l 126 (700)
....++|||+|||+++|++||+++|+.||.|.+ |+|+.+ .+|+++|||||+|++.++|++||+. ++ ..+.++ .|
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~-~~~~gr--~i 86 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HK-ERIGHR--YI 86 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TT-CCSSSS--CC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-Cc-chhCCc--EE
Confidence 456789999999999999999999999999998 888888 7899999999999999999999997 65 445554 57
Q ss_pred eeecccc
Q 005357 127 QVRYADG 133 (700)
Q Consensus 127 ~V~~a~~ 133 (700)
+|..+..
T Consensus 87 ~v~~~~~ 93 (104)
T 1wg5_A 87 EIFKSSR 93 (104)
T ss_dssp EEEEECT
T ss_pred EEEECCH
Confidence 7766543
No 139
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.62 E-value=2.8e-16 Score=138.28 Aligned_cols=82 Identities=21% Similarity=0.369 Sum_probs=72.5
Q ss_pred cceeeccCCCccccHHHHHHHhcCCCc--eeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCcee-ccCCccceE
Q 005357 142 EYKLFVGSLNKQATEKEVEEIFSPYGR--VEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYT-MRGCDQPLT 217 (700)
Q Consensus 142 s~~LfV~nLp~~~teedL~~~F~~fG~--V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~-~~g~gr~L~ 217 (700)
-.+|||+||++++|+++|+++|++||. |.+|+|++|+ ++.+||||||+|++.++|.+|++.||+... +..+||.|+
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 468999999999999999999999995 6789999886 589999999999999999999999999731 112789999
Q ss_pred EEecCC
Q 005357 218 VRFADP 223 (700)
Q Consensus 218 V~~a~~ 223 (700)
|+||+.
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999975
No 140
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.62 E-value=5.8e-16 Score=139.31 Aligned_cols=86 Identities=26% Similarity=0.423 Sum_probs=71.4
Q ss_pred CCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccc
Q 005357 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGP 125 (700)
Q Consensus 46 ~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~ 125 (700)
....+.++|||+||+.++|+++|+++|+.||.|++|+|++++.||+++|||||+|++.++|++||+.+ + ..+.| +.
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~-~~l~g--~~ 95 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-R-HELDS--KT 95 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-C-EEETT--EE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-C-CcCCC--EE
Confidence 34567899999999999999999999999999999999999999999999999999999999999986 4 55555 45
Q ss_pred ceeecccccc
Q 005357 126 IQVRYADGER 135 (700)
Q Consensus 126 l~V~~a~~~~ 135 (700)
|+|+++..+.
T Consensus 96 l~V~~a~~~~ 105 (109)
T 2rs2_A 96 IDPKVAFPRR 105 (109)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEccCCC
Confidence 7777776543
No 141
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.62 E-value=8.4e-16 Score=132.09 Aligned_cols=81 Identities=25% Similarity=0.425 Sum_probs=72.7
Q ss_pred CCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceee
Q 005357 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVR 129 (700)
Q Consensus 50 ~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~ 129 (700)
+.++|||+|||.++++++|+++|+.||.|.+|+++.++.+++++|||||+|++.++|++|+ .|++..+ .| +.|+|+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~-~g--~~l~V~ 80 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLF-RG--RQIKVI 80 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEE-TT--EECEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEE-CC--cEEEEE
Confidence 4689999999999999999999999999999999999999999999999999999999999 8988665 44 558888
Q ss_pred ccccc
Q 005357 130 YADGE 134 (700)
Q Consensus 130 ~a~~~ 134 (700)
+++..
T Consensus 81 ~a~~~ 85 (89)
T 3ucg_A 81 PKRTN 85 (89)
T ss_dssp ETTTT
T ss_pred EccCC
Confidence 87653
No 142
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.62 E-value=8.9e-16 Score=133.73 Aligned_cols=82 Identities=27% Similarity=0.442 Sum_probs=77.0
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
....++|||+||++++++++|+++|++||.|++|+|++++++.++|||||+|++.++|.+|++.||+..+ +++.|+|
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~V 89 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRL---YGRPINV 89 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEE---TTEECEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEE---CCCEEEE
Confidence 3456899999999999999999999999999999999998889999999999999999999999999988 7999999
Q ss_pred EecCC
Q 005357 219 RFADP 223 (700)
Q Consensus 219 ~~a~~ 223 (700)
+|++.
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99864
No 143
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=9.1e-16 Score=137.35 Aligned_cols=83 Identities=19% Similarity=0.358 Sum_probs=70.5
Q ss_pred CCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhccc-ccCCCcccc
Q 005357 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQ-HTLPGGVGP 125 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~-~~~~g~~~~ 125 (700)
.....++|||+|||+++||+||+++|++||.|++|+|+++ ||||||+|++.++|++||+.|++. ..+.| +.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G--r~ 83 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRG--QP 83 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETT--EE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECC--EE
Confidence 3567899999999999999999999999999999999876 589999999999999999988643 44554 56
Q ss_pred ceeecccccccc
Q 005357 126 IQVRYADGERER 137 (700)
Q Consensus 126 l~V~~a~~~~~~ 137 (700)
|+|.+++.+...
T Consensus 84 l~V~~A~~~~~~ 95 (105)
T 1sjq_A 84 IYIQFSNHKELK 95 (105)
T ss_dssp CCBCCCSSSSCC
T ss_pred EEEEEcCCCCCC
Confidence 888888765443
No 144
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.62 E-value=1.2e-15 Score=132.05 Aligned_cols=84 Identities=24% Similarity=0.350 Sum_probs=77.2
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~ 219 (700)
...++|||+||++++++++|+++|++||.|++|+|+++ ++.++|||||+|++.++|.+|++.||+..+ +++.|+|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~---~g~~l~v~ 81 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKL---SGREIDVR 81 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCB---TTBCCCCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEE---CCcEEEEE
Confidence 45689999999999999999999999999999999984 788999999999999999999999999988 79999999
Q ss_pred ecCCCCCC
Q 005357 220 FADPKRPR 227 (700)
Q Consensus 220 ~a~~k~~r 227 (700)
+++++...
T Consensus 82 ~a~~~~~~ 89 (92)
T 2dgv_A 82 IDRNASGP 89 (92)
T ss_dssp ECSCCSSC
T ss_pred EcCCCCCC
Confidence 99886543
No 145
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.1e-16 Score=141.25 Aligned_cols=83 Identities=19% Similarity=0.263 Sum_probs=71.9
Q ss_pred CCCCCceEEEeCCCCCCcHHHHHHHHhccCCe-eEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccc
Q 005357 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNV-IEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGP 125 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~~vteedL~elF~~~G~V-~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~ 125 (700)
.....++|||+|||+++|++||+++|+.||.| .+|+|+.|+ +|+++|||||+|++.++|++||+. ++ ..+.+ +.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~-~~~~g--r~ 85 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HR-KKLNG--RE 85 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CS-EEETT--EE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CC-CccCC--eE
Confidence 34567899999999999999999999999999 899999998 899999999999999999999986 66 44444 45
Q ss_pred ceeeccccc
Q 005357 126 IQVRYADGE 134 (700)
Q Consensus 126 l~V~~a~~~ 134 (700)
|+|.++..+
T Consensus 86 i~v~~a~~~ 94 (114)
T 2cpy_A 86 AFVHVVTLE 94 (114)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
Confidence 777777544
No 146
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=135.74 Aligned_cols=85 Identities=28% Similarity=0.490 Sum_probs=78.1
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
...+++|||+||+.++++++|+++|+.||.|++|.|+.+. ++.++|||||+|++.++|.+|++.||+..+ +|+.|+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~ 96 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL---MGQPIS 96 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBS---SSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEE---CCcEEE
Confidence 3456899999999999999999999999999999999886 588999999999999999999999999987 789999
Q ss_pred EEecCCCCC
Q 005357 218 VRFADPKRP 226 (700)
Q Consensus 218 V~~a~~k~~ 226 (700)
|+|++++..
T Consensus 97 V~~a~~~~~ 105 (106)
T 1p27_B 97 VDWCFVRGP 105 (106)
T ss_dssp EEESEESSC
T ss_pred EEeecCCCC
Confidence 999987653
No 147
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.62 E-value=1.2e-15 Score=133.61 Aligned_cols=81 Identities=21% Similarity=0.387 Sum_probs=76.4
Q ss_pred cceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEe
Q 005357 142 EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220 (700)
Q Consensus 142 s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~ 220 (700)
+++|||+||+.++++++|+++|++||.|++|+|+++. ++.++|||||+|++.++|.+|++.|+|..+ +|+.|+|++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l~V~~ 78 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQL---GSRFLKCGY 78 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEE---TTEECEEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeE---CCeEEEEEE
Confidence 5789999999999999999999999999999999886 588999999999999999999999999988 789999999
Q ss_pred cCCCC
Q 005357 221 ADPKR 225 (700)
Q Consensus 221 a~~k~ 225 (700)
++++.
T Consensus 79 a~~~~ 83 (96)
T 2x1f_A 79 SSNSD 83 (96)
T ss_dssp CSCSS
T ss_pred cCCCC
Confidence 98864
No 148
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.62 E-value=1.8e-15 Score=134.28 Aligned_cols=82 Identities=28% Similarity=0.481 Sum_probs=73.6
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~ 219 (700)
...++|||+||++++++++|+++|++||.|++|+|+ ++||||+|++.++|.+|++.||+..+ +++.|+|+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v~ 78 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDL---EGENIEIV 78 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEE---TTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCcc---CCCEEEEE
Confidence 346799999999999999999999999999999987 45999999999999999999999988 79999999
Q ss_pred ecCCCCCCCCCC
Q 005357 220 FADPKRPRPGDS 231 (700)
Q Consensus 220 ~a~~k~~r~~~~ 231 (700)
|++++..+....
T Consensus 79 ~a~~~~~~~~~~ 90 (103)
T 2dgu_A 79 FAKPPDQKRKER 90 (103)
T ss_dssp ECCCCCCCCCCC
T ss_pred EcCCCcccchhh
Confidence 999876655433
No 149
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.1e-15 Score=136.45 Aligned_cols=82 Identities=15% Similarity=0.365 Sum_probs=71.3
Q ss_pred CCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccc
Q 005357 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPI 126 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l 126 (700)
+....++|||+|||.++|+++|+++|+.||+|.+|+|++|+. |+++|||||+|++.++|++||+ +++ ..+.| +.|
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~-~~~~g--r~l 81 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPG-QKYKE--TDL 81 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSC-CCCTT--TTC
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCC-CEECC--EEE
Confidence 355679999999999999999999999999999999999987 9999999999999999999999 766 44555 457
Q ss_pred eeecccc
Q 005357 127 QVRYADG 133 (700)
Q Consensus 127 ~V~~a~~ 133 (700)
.|.++..
T Consensus 82 ~V~~~~~ 88 (103)
T 1s79_A 82 LILFKDD 88 (103)
T ss_dssp EEEEHHH
T ss_pred EEEEchH
Confidence 7776643
No 150
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=136.40 Aligned_cols=86 Identities=27% Similarity=0.443 Sum_probs=75.1
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCC-eeEEEEe-ecCCCCCcccEEEEEeCCHHHHHHHHHHhc-ccccCCCcccc
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGN-VIEVALI-KDKKTGQQQGCCFIKYATSEEADRAIRALH-NQHTLPGGVGP 125 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~-V~~i~i~-~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~-g~~~~~g~~~~ 125 (700)
.+.++|||+|||.++|+++|+++|+.||. |++|+|+ .++.+++++|||||+|++.++|++||+.|+ +...+.| +.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g--~~ 83 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HQ 83 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT--BC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC--Ce
Confidence 45799999999999999999999999998 9999999 788889999999999999999999999995 3355555 45
Q ss_pred ceeeccccccc
Q 005357 126 IQVRYADGERE 136 (700)
Q Consensus 126 l~V~~a~~~~~ 136 (700)
|+|++++.+..
T Consensus 84 l~V~~a~~~~~ 94 (109)
T 2dis_A 84 IAVDWAEPEID 94 (109)
T ss_dssp CEEEESCSSCS
T ss_pred EEEEEcCCCCC
Confidence 88888876544
No 151
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.8e-15 Score=131.60 Aligned_cols=82 Identities=29% Similarity=0.373 Sum_probs=76.3
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
....++|||+||+.++++++|+++|++||.|++|+|+++. ++.++|||||+|++.++|.+|++.||+..+ +++.|+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~ 88 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL---DGRRIR 88 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEE---TTEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE---CCEEEE
Confidence 4557899999999999999999999999999999999886 478999999999999999999999999888 799999
Q ss_pred EEecCC
Q 005357 218 VRFADP 223 (700)
Q Consensus 218 V~~a~~ 223 (700)
|+|++.
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999875
No 152
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.7e-15 Score=133.70 Aligned_cols=83 Identities=18% Similarity=0.307 Sum_probs=74.7
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
....++|||+||++++++++|+++|++||.| +|+++.++.++|||||+|++.++|.+|++.||+..+ +++.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~v 85 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREI---EGRAIRL 85 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEE---TTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEe---CCeEEEE
Confidence 4457899999999999999999999999977 566677789999999999999999999999999888 7999999
Q ss_pred EecCCCCCC
Q 005357 219 RFADPKRPR 227 (700)
Q Consensus 219 ~~a~~k~~r 227 (700)
+|++++..+
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2fc9_A 86 ELQGPRGSP 94 (101)
T ss_dssp EECSSCCCC
T ss_pred EEcCCCCCC
Confidence 999887543
No 153
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.61 E-value=9.6e-16 Score=130.59 Aligned_cols=80 Identities=28% Similarity=0.501 Sum_probs=74.8
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeC-CCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d-~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
...++|||+||+.++++++|+++|++||.|++|+|+++ .++.++|||||+|++.++|.+|++.||+..+ +|+.|+|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v 81 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL---FGRTIRV 81 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEE---CCcEEEE
Confidence 45689999999999999999999999999999999888 4688999999999999999999999999998 7999999
Q ss_pred EecC
Q 005357 219 RFAD 222 (700)
Q Consensus 219 ~~a~ 222 (700)
+|++
T Consensus 82 ~~ak 85 (85)
T 3mdf_A 82 NLAK 85 (85)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9985
No 154
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.61 E-value=2.1e-15 Score=138.31 Aligned_cols=85 Identities=21% Similarity=0.370 Sum_probs=75.3
Q ss_pred CCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccc
Q 005357 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPI 126 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l 126 (700)
.....++|||+||+.++++++|+++|+.||+|++|+|++++ +|+++|||||+|++.++|++||+.|++..+ .| +.|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~-~g--~~l 106 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPL-DG--RPM 106 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEES-SS--CEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEE-CC--cEE
Confidence 34667999999999999999999999999999999999998 899999999999999999999999988544 44 558
Q ss_pred eeecccccc
Q 005357 127 QVRYADGER 135 (700)
Q Consensus 127 ~V~~a~~~~ 135 (700)
+|+++....
T Consensus 107 ~V~~a~~~~ 115 (124)
T 2kt5_A 107 DIQLVASQI 115 (124)
T ss_dssp EEEEECCTT
T ss_pred EEEEeCCCC
Confidence 888876543
No 155
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2.9e-15 Score=134.01 Aligned_cols=84 Identities=13% Similarity=0.190 Sum_probs=70.5
Q ss_pred CCCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccc-cCCCcc
Q 005357 45 LVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQH-TLPGGV 123 (700)
Q Consensus 45 ~~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~-~~~g~~ 123 (700)
.....++++|||+||+++++|+||+++|++||.|++|+|+++ ||||||+|++.++|++||+.|++.. .+.|
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G-- 80 (104)
T 1wex_A 9 HHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAG-- 80 (104)
T ss_dssp CCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSS--
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECC--
Confidence 334567899999999999999999999999999999998764 5799999999999999999987643 3444
Q ss_pred ccceeeccccccc
Q 005357 124 GPIQVRYADGERE 136 (700)
Q Consensus 124 ~~l~V~~a~~~~~ 136 (700)
+.|+|.+++.+..
T Consensus 81 r~l~V~~a~~~~~ 93 (104)
T 1wex_A 81 QQAFFNYSTSKRI 93 (104)
T ss_dssp SBCEEEECSSSSC
T ss_pred EEEEEEEccCccc
Confidence 5588888876543
No 156
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=9e-16 Score=138.33 Aligned_cols=87 Identities=17% Similarity=0.295 Sum_probs=74.9
Q ss_pred CCCCCCceEEEeCCCCCCcHHHHH---HHHhccCCeeEEEEeecCCCC---CcccEEEEEeCCHHHHHHHHHHhcccccC
Q 005357 46 VDGSSFAKLFVGSVPKTAREEDIR---PLFEEHGNVIEVALIKDKKTG---QQQGCCFIKYATSEEADRAIRALHNQHTL 119 (700)
Q Consensus 46 ~~~~~~~tLfVgnLP~~vteedL~---elF~~~G~V~~i~i~~d~~Tg---~skG~aFVeF~~~edA~~Ai~~L~g~~~~ 119 (700)
......++|||+|||++++++||+ ++|++||+|++|+|++++.++ +++|||||+|++.++|++||+.||+..+
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~- 88 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV- 88 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE-
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE-
Confidence 345567899999999999999999 999999999999999988754 5569999999999999999999988655
Q ss_pred CCccccceeecccccc
Q 005357 120 PGGVGPIQVRYADGER 135 (700)
Q Consensus 120 ~g~~~~l~V~~a~~~~ 135 (700)
+| +.|+|+++..+.
T Consensus 89 ~g--r~l~V~~a~~k~ 102 (111)
T 2cpi_A 89 DG--RTLKASLGTTKY 102 (111)
T ss_dssp TT--EEEEEESCCCCS
T ss_pred CC--EEEEEEeccccc
Confidence 44 568888887654
No 157
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.61 E-value=1.3e-15 Score=141.37 Aligned_cols=85 Identities=33% Similarity=0.453 Sum_probs=78.6
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
...+++|||+||++++++++|+++|++||.|++|+|++++ ++.++|||||+|++.++|++||+.|++..+ +++.|+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i---~g~~l~ 119 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL---DGRRIR 119 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCS---SSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE---CCEEEE
Confidence 3456899999999999999999999999999999999886 578999999999999999999999999887 799999
Q ss_pred EEecCCCCC
Q 005357 218 VRFADPKRP 226 (700)
Q Consensus 218 V~~a~~k~~ 226 (700)
|+|+++++.
T Consensus 120 V~~a~~~~p 128 (129)
T 2kxn_B 120 VDFSITKRP 128 (129)
T ss_dssp ESCCSSSSC
T ss_pred EEEecCCCC
Confidence 999998764
No 158
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.61 E-value=6.8e-16 Score=128.59 Aligned_cols=75 Identities=24% Similarity=0.512 Sum_probs=66.8
Q ss_pred eEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceeecc
Q 005357 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYA 131 (700)
Q Consensus 53 tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~~a 131 (700)
+|||+|||.++++++|+++|+.||+|.+|+++.++.+++++|||||+|++.++|++|++ +++.. +.| +.|+|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~-~~g--~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHE-INN--KMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCC-SSS--CCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCE-ECC--EEEEEEeC
Confidence 59999999999999999999999999999999999899999999999999999999998 76644 444 44777654
No 159
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.2e-15 Score=135.85 Aligned_cols=80 Identities=18% Similarity=0.229 Sum_probs=67.8
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
....++|||+|||+++||+||+++|+.||. ++|+|++|+ +++++|||||+|++.++|++||+ +++ ..+.++ .|+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~-~~~~gr--~i~ 85 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDK-ANMQHR--YVE 85 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSS-CCSSSS--CCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCC-CeECCc--EEE
Confidence 345689999999999999999999999994 599999998 89999999999999999999995 665 555554 466
Q ss_pred eecccc
Q 005357 128 VRYADG 133 (700)
Q Consensus 128 V~~a~~ 133 (700)
|..+..
T Consensus 86 V~~~~~ 91 (102)
T 1wez_A 86 LFLNST 91 (102)
T ss_dssp EEEECC
T ss_pred EEECCC
Confidence 665543
No 160
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.3e-15 Score=135.44 Aligned_cols=86 Identities=29% Similarity=0.465 Sum_probs=78.3
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
....++|||+||++++++++|+++|+.||.|++|+|++++ ++.++|||||+|++.++|.+|++. ++..+ +++.|+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~---~g~~l~ 88 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTL---DGRNID 88 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEE---TTEEEB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeE---CCEEEE
Confidence 4456899999999999999999999999999999999985 688999999999999999999998 99887 799999
Q ss_pred EEecCCCCCCC
Q 005357 218 VRFADPKRPRP 228 (700)
Q Consensus 218 V~~a~~k~~r~ 228 (700)
|++++++..+.
T Consensus 89 V~~a~~~~~~~ 99 (105)
T 2dh8_A 89 PKPCTPRGMQP 99 (105)
T ss_dssp CCCSCCSSCCT
T ss_pred EEEccCCCCCC
Confidence 99999876543
No 161
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=5.4e-16 Score=129.64 Aligned_cols=76 Identities=24% Similarity=0.480 Sum_probs=68.3
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceeecc
Q 005357 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYA 131 (700)
Q Consensus 52 ~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~~a 131 (700)
++|||+|||.++++++|+++|+.||+|.+|++++++.+++++|||||+|++.++|++|++.++ ..+.|+ .|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~--~~~~g~--~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR--HELDSK--TIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT--CCCSSC--CCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC--CccCCE--EEEEEec
Confidence 589999999999999999999999999999999999999999999999999999999999886 555554 4666654
No 162
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.61 E-value=4.6e-16 Score=134.77 Aligned_cols=81 Identities=16% Similarity=0.225 Sum_probs=70.4
Q ss_pred ceeeccCCCccccHHHHHHHhcCCC--ceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEE
Q 005357 143 YKLFVGSLNKQATEKEVEEIFSPYG--RVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219 (700)
Q Consensus 143 ~~LfV~nLp~~~teedL~~~F~~fG--~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~ 219 (700)
.+|||+||++++++++|+++|+.|| .|++|+|++++ ++.++|||||+|++.++|.+|++.|||..+ +|+.|+|+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~---~gr~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL---HGQNPVVT 78 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCS---SSCCCEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCee---CCEEEEEE
Confidence 4799999999999999999999999 99999999986 689999999999999999999999999988 79999999
Q ss_pred ecCCCCC
Q 005357 220 FADPKRP 226 (700)
Q Consensus 220 ~a~~k~~ 226 (700)
++.+...
T Consensus 79 ~~~~~~~ 85 (90)
T 3p5t_L 79 PSNKLEH 85 (90)
T ss_dssp CC-----
T ss_pred ECCCCcc
Confidence 9988643
No 163
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.2e-15 Score=131.01 Aligned_cols=81 Identities=25% Similarity=0.416 Sum_probs=75.2
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCC-CCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDEL-KQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~-g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
....++|||+||+.++++++|+++|++||.|++|+|++++. +.++|||||+|++.++|.+|++.||+..+ +++.|+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~ 89 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQL---FGRVIK 89 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEE---TTEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCee---CCcEEE
Confidence 34568999999999999999999999999999999998864 78999999999999999999999999988 799999
Q ss_pred EEecC
Q 005357 218 VRFAD 222 (700)
Q Consensus 218 V~~a~ 222 (700)
|+|++
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99985
No 164
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.1e-15 Score=138.49 Aligned_cols=85 Identities=28% Similarity=0.398 Sum_probs=77.4
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
...++|||+||++++++++|+++|+.||.|++|+|+++. ++.++|||||+|++.++|.+||+. ++..+ +++.|+|
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~---~g~~l~V 100 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSI---DGRVVEP 100 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEE---TTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEE---CCEEEEE
Confidence 446899999999999999999999999999999999985 588999999999999999999998 88877 7999999
Q ss_pred EecCCCCCCC
Q 005357 219 RFADPKRPRP 228 (700)
Q Consensus 219 ~~a~~k~~r~ 228 (700)
+++.++..+.
T Consensus 101 ~~a~~~~~~~ 110 (116)
T 1x4b_A 101 KRAVAREESG 110 (116)
T ss_dssp ECCSSCCCCC
T ss_pred EECCCCccCC
Confidence 9999876543
No 165
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.6e-15 Score=133.62 Aligned_cols=85 Identities=21% Similarity=0.357 Sum_probs=70.7
Q ss_pred CCCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc-cccCCCcc
Q 005357 45 LVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHN-QHTLPGGV 123 (700)
Q Consensus 45 ~~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g-~~~~~g~~ 123 (700)
.....++++|||+|||++++++||+++|+.||.|++|+|+++ ||||||+|++.++|++||+.|++ ...+.|
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G-- 80 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRN-- 80 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETT--
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECC--
Confidence 344567899999999999999999999999999999998875 68999999999999999998863 233444
Q ss_pred ccceeecccccccc
Q 005357 124 GPIQVRYADGERER 137 (700)
Q Consensus 124 ~~l~V~~a~~~~~~ 137 (700)
+.|+|.+++.+...
T Consensus 81 r~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 81 QPIYIQYSNHKELK 94 (101)
T ss_dssp EECEEEECSCSSCC
T ss_pred cEEEEEEcCcccCc
Confidence 56888888765443
No 166
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.61 E-value=1.5e-15 Score=136.12 Aligned_cols=86 Identities=34% Similarity=0.519 Sum_probs=79.0
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
....++|||+||++++++++|+++|+.||.|++|+|+.+. ++.++|||||+|.+.++|.+|++.|||..+ +|+.|+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l~ 99 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI---MGQTIQ 99 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEE---TTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE---CCcEEE
Confidence 3456899999999999999999999999999999998885 688999999999999999999999999988 799999
Q ss_pred EEecCCCCCC
Q 005357 218 VRFADPKRPR 227 (700)
Q Consensus 218 V~~a~~k~~r 227 (700)
|+|++++..+
T Consensus 100 V~~a~~~~~~ 109 (110)
T 1oo0_B 100 VDWCFVKGPK 109 (110)
T ss_dssp EEESEESSCC
T ss_pred EEEcccCCCC
Confidence 9999887544
No 167
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.4e-15 Score=135.69 Aligned_cols=79 Identities=10% Similarity=0.259 Sum_probs=71.2
Q ss_pred CcccceeeccCCCc-cccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCce--eccCCccc
Q 005357 139 GAVEYKLFVGSLNK-QATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIY--TMRGCDQP 215 (700)
Q Consensus 139 ~~~s~~LfV~nLp~-~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~--~~~g~gr~ 215 (700)
...+++|||+||++ +++++||+++|+.||.|++|+|+++ +|||||+|++.++|.+|++.|++.. + +|+.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~---~Gr~ 83 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALV---FGKP 83 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEE---TTEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceE---CCcE
Confidence 34578999999999 9999999999999999999999876 6899999999999999999998653 5 7999
Q ss_pred eEEEecCCCC
Q 005357 216 LTVRFADPKR 225 (700)
Q Consensus 216 L~V~~a~~k~ 225 (700)
|+|.|++.+.
T Consensus 84 l~V~~a~~~~ 93 (102)
T 1x4d_A 84 VRVHLSQKYK 93 (102)
T ss_dssp CEEEEECCCT
T ss_pred EEEEECCCCC
Confidence 9999998754
No 168
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3.4e-15 Score=129.07 Aligned_cols=79 Identities=28% Similarity=0.459 Sum_probs=72.5
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~ 219 (700)
...++|||+||++++++++|+++|++||.|++|+|+ +|||||+|++.++|.+|++.||+..+ +++.|+|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~v~ 75 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKL---HGVNINVE 75 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBC---SSCBCEEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCcc---CCcEEEEE
Confidence 456899999999999999999999999999999997 57999999999999999999999887 79999999
Q ss_pred ecCCCCCCC
Q 005357 220 FADPKRPRP 228 (700)
Q Consensus 220 ~a~~k~~r~ 228 (700)
+++++..+.
T Consensus 76 ~a~~~~~~~ 84 (90)
T 2dnq_A 76 ASKNKSKAS 84 (90)
T ss_dssp CSSCCCCCC
T ss_pred ECCCCCCCC
Confidence 999876543
No 169
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.8e-15 Score=132.73 Aligned_cols=81 Identities=20% Similarity=0.215 Sum_probs=75.0
Q ss_pred ccceeeccCCCccccHHHHH----HHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccce
Q 005357 141 VEYKLFVGSLNKQATEKEVE----EIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPL 216 (700)
Q Consensus 141 ~s~~LfV~nLp~~~teedL~----~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L 216 (700)
..++|||+||++++++++|+ ++|++||.|++|+|+.++.+ +|||||+|++.++|.+|++.|||..+ +++.|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~---~gr~l 82 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKI---GSKKI 82 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEE---TTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEE---CCeEE
Confidence 45789999999999999999 99999999999999988765 89999999999999999999999988 79999
Q ss_pred EEEecCCCCC
Q 005357 217 TVRFADPKRP 226 (700)
Q Consensus 217 ~V~~a~~k~~ 226 (700)
+|++++++..
T Consensus 83 ~V~~a~~~~~ 92 (96)
T 2dgx_A 83 LVSLATGASG 92 (96)
T ss_dssp EEEECCCSSC
T ss_pred EEEEcCCCCC
Confidence 9999987643
No 170
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.4e-15 Score=137.77 Aligned_cols=86 Identities=24% Similarity=0.523 Sum_probs=74.9
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
....++|||+|||.++|+++|+++|+.||.|++|+|++++.|++++|||||+|++.++|++||+. ++ ..+.| +.|+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~-~~~~g--~~l~ 99 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RP-HSIDG--RVVE 99 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CS-EEETT--EEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CC-cEECC--EEEE
Confidence 34579999999999999999999999999999999999999999999999999999999999987 55 44444 4588
Q ss_pred eecccccccc
Q 005357 128 VRYADGERER 137 (700)
Q Consensus 128 V~~a~~~~~~ 137 (700)
|+++..+...
T Consensus 100 V~~a~~~~~~ 109 (116)
T 1x4b_A 100 PKRAVAREES 109 (116)
T ss_dssp EECCSSCCCC
T ss_pred EEECCCCccC
Confidence 8888765443
No 171
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.60 E-value=2.2e-15 Score=135.29 Aligned_cols=84 Identities=35% Similarity=0.621 Sum_probs=78.0
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
....++|||+||+.++++++|+++|++||.|++|+|+++. ++.++|||||+|++.++|.+|++.|+|..+ +|+.|+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i---~g~~l~ 99 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL---AGRPMK 99 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCS---SSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEE---CCEEEE
Confidence 4557899999999999999999999999999999999885 588999999999999999999999999887 799999
Q ss_pred EEecCCCC
Q 005357 218 VRFADPKR 225 (700)
Q Consensus 218 V~~a~~k~ 225 (700)
|++++++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99998864
No 172
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.9e-15 Score=136.18 Aligned_cols=83 Identities=22% Similarity=0.376 Sum_probs=76.0
Q ss_pred cccceeeccCCCccccHHHHH---HHhcCCCceeEEEEeeCCC----CCccceEEEEeCCHHHHHHHHHHhcCceeccCC
Q 005357 140 AVEYKLFVGSLNKQATEKEVE---EIFSPYGRVEDVYLMRDEL----KQSRGCGFVKYSHRDMALAAINALNGIYTMRGC 212 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~---~~F~~fG~V~~v~I~~d~~----g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~ 212 (700)
...++|||+||+++++++||+ ++|++||.|++|+|+++.. +.++|||||+|++.++|.+|++.||+..+ +
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~---~ 89 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV---D 89 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE---T
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE---C
Confidence 346799999999999999999 9999999999999988763 35679999999999999999999999988 7
Q ss_pred ccceEEEecCCCC
Q 005357 213 DQPLTVRFADPKR 225 (700)
Q Consensus 213 gr~L~V~~a~~k~ 225 (700)
++.|+|+|++++.
T Consensus 90 gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 GRTLKASLGTTKY 102 (111)
T ss_dssp TEEEEEESCCCCS
T ss_pred CEEEEEEeccccc
Confidence 9999999999875
No 173
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.60 E-value=1.5e-15 Score=130.14 Aligned_cols=83 Identities=24% Similarity=0.420 Sum_probs=75.9
Q ss_pred ccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCC-C-CccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDEL-K-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 141 ~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~-g-~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
..++|||+||+.++++++|+++|+.||.|++|.|+.+.. + .++|||||+|++.++|.+|++.|||..+ +|+.|+|
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v 79 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQI---DGQEITA 79 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeE---CCeEEEE
Confidence 357899999999999999999999999999999988864 3 3899999999999999999999999998 7999999
Q ss_pred EecCCCCC
Q 005357 219 RFADPKRP 226 (700)
Q Consensus 219 ~~a~~k~~ 226 (700)
+++.+...
T Consensus 80 ~~a~~~~~ 87 (88)
T 4a8x_A 80 TAVLAPWP 87 (88)
T ss_dssp EEECCCCC
T ss_pred EECCCCCC
Confidence 99987654
No 174
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.60 E-value=2.2e-15 Score=134.26 Aligned_cols=81 Identities=21% Similarity=0.397 Sum_probs=76.6
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
....++|||+||++++++++|+++|+.||.|++|+|+.+.++.++|||||+|++.++|.+|++.||+..+ +++.|+|
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~V 102 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPL---DGRPMNI 102 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEe---CCcEEEE
Confidence 3457899999999999999999999999999999999999899999999999999999999999999998 7999999
Q ss_pred EecC
Q 005357 219 RFAD 222 (700)
Q Consensus 219 ~~a~ 222 (700)
++++
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9986
No 175
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=2.1e-15 Score=134.41 Aligned_cols=81 Identities=16% Similarity=0.231 Sum_probs=69.3
Q ss_pred CCCCCceEEEeCCCC-CCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccc-cCCCccc
Q 005357 47 DGSSFAKLFVGSVPK-TAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQH-TLPGGVG 124 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~-~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~-~~~g~~~ 124 (700)
...++++|||+|||+ ++||+||+++|+.||.|.+|+|++++ |||||+|++.++|++||+.|++.. .+.| +
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~G--r 82 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFG--K 82 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETT--E
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECC--c
Confidence 345789999999999 99999999999999999999998764 699999999999999999998643 3444 5
Q ss_pred cceeecccccc
Q 005357 125 PIQVRYADGER 135 (700)
Q Consensus 125 ~l~V~~a~~~~ 135 (700)
.|+|.++...+
T Consensus 83 ~l~V~~a~~~~ 93 (102)
T 1x4d_A 83 PVRVHLSQKYK 93 (102)
T ss_dssp ECEEEEECCCT
T ss_pred EEEEEECCCCC
Confidence 58888887544
No 176
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.1e-15 Score=132.25 Aligned_cols=81 Identities=21% Similarity=0.260 Sum_probs=71.2
Q ss_pred CCCceEEEeCCCCCCcHHHHH----HHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccc
Q 005357 49 SSFAKLFVGSVPKTAREEDIR----PLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVG 124 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~----elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~ 124 (700)
.+.++|||+|||+++++++|+ ++|++||+|++|+|+.|+.+ +|||||+|++.++|++||+.||+..+ .| +
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~-~g--r 80 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKI-GS--K 80 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEE-TT--E
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEE-CC--e
Confidence 456899999999999999999 99999999999999999865 89999999999999999999988655 34 5
Q ss_pred cceeecccccc
Q 005357 125 PIQVRYADGER 135 (700)
Q Consensus 125 ~l~V~~a~~~~ 135 (700)
.|+|++++...
T Consensus 81 ~l~V~~a~~~~ 91 (96)
T 2dgx_A 81 KILVSLATGAS 91 (96)
T ss_dssp EEEEEECCCSS
T ss_pred EEEEEEcCCCC
Confidence 68888886543
No 177
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.1e-15 Score=132.34 Aligned_cols=82 Identities=21% Similarity=0.423 Sum_probs=72.8
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhc--CceeccCCccce
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALN--GIYTMRGCDQPL 216 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Ln--g~~~~~g~gr~L 216 (700)
...+++|||+||+++++++||+++|+.||.|++|+|+++ ||||||+|++.++|.+|++.|+ +..+ +|+.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~---~Gr~l 83 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHL---RNQPI 83 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEE---TTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceE---CCcEE
Confidence 345689999999999999999999999999999998865 8999999999999999999875 4556 78999
Q ss_pred EEEecCCCCCCC
Q 005357 217 TVRFADPKRPRP 228 (700)
Q Consensus 217 ~V~~a~~k~~r~ 228 (700)
+|.|++.+....
T Consensus 84 ~V~~a~~~~~~~ 95 (101)
T 2cq1_A 84 YIQYSNHKELKT 95 (101)
T ss_dssp EEEECSCSSCCC
T ss_pred EEEEcCcccCcC
Confidence 999999876554
No 178
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.60 E-value=7.8e-16 Score=136.03 Aligned_cols=82 Identities=21% Similarity=0.341 Sum_probs=69.6
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecC-CCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccc
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDK-KTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPI 126 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~-~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l 126 (700)
....++|||+||+.++++++|+++|+.|| |++|+|++++ .+|+++|||||+|++.++|++|| .|++..+ .| +.|
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~-~g--~~l 90 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL-GN--RRI 90 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCB-TT--BCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEE-CC--eEE
Confidence 45679999999999999999999999999 9999999998 68999999999999999999999 8987554 44 457
Q ss_pred eeeccccc
Q 005357 127 QVRYADGE 134 (700)
Q Consensus 127 ~V~~a~~~ 134 (700)
+|++++..
T Consensus 91 ~V~~a~~~ 98 (100)
T 2j76_E 91 RVDVADQA 98 (100)
T ss_dssp CCEECCCS
T ss_pred EEEeccCC
Confidence 77777643
No 179
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.1e-15 Score=136.92 Aligned_cols=82 Identities=18% Similarity=0.355 Sum_probs=73.2
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcC--ceeccCCccceE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNG--IYTMRGCDQPLT 217 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng--~~~~~g~gr~L~ 217 (700)
...++|||+||+++++++||+++|++||.|++|+|+++ ||||||+|++.++|.+|++.|++ ..+ +|+.|+
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l---~Gr~l~ 85 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVL---RGQPIY 85 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEE---TTEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceE---CCEEEE
Confidence 45689999999999999999999999999999999876 79999999999999999999875 556 789999
Q ss_pred EEecCCCCCCCC
Q 005357 218 VRFADPKRPRPG 229 (700)
Q Consensus 218 V~~a~~k~~r~~ 229 (700)
|+|++.+.....
T Consensus 86 V~~A~~~~~~~~ 97 (105)
T 1sjq_A 86 IQFSNHKELKTD 97 (105)
T ss_dssp BCCCSSSSCCCT
T ss_pred EEEcCCCCCCcc
Confidence 999988765543
No 180
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.8e-15 Score=129.70 Aligned_cols=81 Identities=15% Similarity=0.369 Sum_probs=71.5
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
....++|||+|||++++++||+++|+.| .|++|+|+++ .+|+++|||||+|++.++|++||+ |++..+ .| +.|+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~-~g--r~i~ 80 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYM-GG--RYIE 80 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEE-TT--EEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCcee-CC--cEEE
Confidence 4567899999999999999999999999 9999999999 789999999999999999999999 987554 44 4588
Q ss_pred eeccccc
Q 005357 128 VRYADGE 134 (700)
Q Consensus 128 V~~a~~~ 134 (700)
|.++..+
T Consensus 81 v~~a~~~ 87 (91)
T 2dgw_A 81 VFREKSG 87 (91)
T ss_dssp EEEESSC
T ss_pred EEECCcC
Confidence 8877654
No 181
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.60 E-value=9.9e-16 Score=139.81 Aligned_cols=80 Identities=18% Similarity=0.292 Sum_probs=69.9
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCC---eeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccc
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGN---VIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVG 124 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~---V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~ 124 (700)
....++|||+|||+++|++||+++|+.||. |++|+|++|+. |+++|||||+|++.++|++||+ +++.. +.+ +
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~-~~g--r 88 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRES-MGH--R 88 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEE-ETT--E
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCe-ECC--e
Confidence 456789999999999999999999999999 89999999987 9999999999999999999999 87744 444 4
Q ss_pred cceeeccc
Q 005357 125 PIQVRYAD 132 (700)
Q Consensus 125 ~l~V~~a~ 132 (700)
.|+|.++.
T Consensus 89 ~i~V~~a~ 96 (118)
T 2db1_A 89 YIEVFKSH 96 (118)
T ss_dssp EEEEEEEC
T ss_pred EEEEEECC
Confidence 57776654
No 182
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.3e-15 Score=132.84 Aligned_cols=83 Identities=19% Similarity=0.382 Sum_probs=70.5
Q ss_pred CCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccc
Q 005357 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPI 126 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l 126 (700)
.....++|||+|||.++|++||+++|+.||.| +++.+ .+++++|||||+|++.++|++||+.|++..+ .+ +.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~~l 83 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREI-EG--RAI 83 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEE-TT--EEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEe-CC--eEE
Confidence 35568999999999999999999999999976 56666 6799999999999999999999999988555 33 568
Q ss_pred eeeccccccc
Q 005357 127 QVRYADGERE 136 (700)
Q Consensus 127 ~V~~a~~~~~ 136 (700)
+|++++....
T Consensus 84 ~v~~a~~~~~ 93 (101)
T 2fc9_A 84 RLELQGPRGS 93 (101)
T ss_dssp EEEECSSCCC
T ss_pred EEEEcCCCCC
Confidence 8888876544
No 183
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.60 E-value=5e-16 Score=134.04 Aligned_cols=80 Identities=29% Similarity=0.508 Sum_probs=70.0
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceeecc
Q 005357 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYA 131 (700)
Q Consensus 52 ~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~~a 131 (700)
++|||+|||.++++++|+++|+.||+|++|++++++.+|+++|||||+|++.+ |++|++.|++..+ .| +.|+|+++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~-~g--~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDF-MG--RTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCC-SS--SSCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEE-CC--eEEEEEEc
Confidence 68999999999999999999999999999999999999999999999999999 9999999988554 44 45888887
Q ss_pred cccc
Q 005357 132 DGER 135 (700)
Q Consensus 132 ~~~~ 135 (700)
....
T Consensus 78 ~~~~ 81 (90)
T 2ki2_A 78 NPKK 81 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 6543
No 184
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.9e-15 Score=132.78 Aligned_cols=83 Identities=18% Similarity=0.316 Sum_probs=76.8
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCcee-EEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccc--
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVE-DVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQP-- 215 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~-~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~-- 215 (700)
...++|||+||++++++++|+++|++||.|+ +|+|++++ ++.++|||||+|++.++|++|++.||+..+ +++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~~~ 83 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPL---PGATPA 83 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEE---SSCSSC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCcc---CCCCcc
Confidence 4568999999999999999999999999999 99999986 688999999999999999999999999988 6788
Q ss_pred --eEEEecCCCC
Q 005357 216 --LTVRFADPKR 225 (700)
Q Consensus 216 --L~V~~a~~k~ 225 (700)
|+|+|+++..
T Consensus 84 ~~l~v~~a~~~~ 95 (99)
T 2div_A 84 KRFKLNYATYSG 95 (99)
T ss_dssp EECCEEETTCCS
T ss_pred eeEEEeecCCCC
Confidence 9999998754
No 185
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.60 E-value=1.8e-15 Score=138.54 Aligned_cols=84 Identities=21% Similarity=0.396 Sum_probs=74.3
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccccee
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQV 128 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V 128 (700)
...++|||+||+.++|++||+++|+.||.|++|+|++++.+++++|||||+|++.++|++|| .|++..+ .| +.|+|
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~-~g--~~l~V 109 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVF-RG--RTIKV 109 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEE-TT--EECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeE-CC--eEEEE
Confidence 35789999999999999999999999999999999999999999999999999999999999 7987554 44 55888
Q ss_pred eccccccc
Q 005357 129 RYADGERE 136 (700)
Q Consensus 129 ~~a~~~~~ 136 (700)
++++....
T Consensus 110 ~~a~~~~~ 117 (124)
T 2jwn_A 110 LPKRTNMP 117 (124)
T ss_dssp EESSCCCS
T ss_pred EECCCCCC
Confidence 88775443
No 186
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=5e-15 Score=129.81 Aligned_cols=81 Identities=16% Similarity=0.323 Sum_probs=69.3
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
....++|||+|||.++|+++|+++|++||.|++|+++++ +|||||+|++.++|++|++.|++..+ .+..+.|+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~-~~~g~~l~ 86 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPL-GGPDRRLR 86 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBC-SSSSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEe-CCCCcEEE
Confidence 345689999999999999999999999999999999764 67999999999999999999988654 42246688
Q ss_pred eecccccc
Q 005357 128 VRYADGER 135 (700)
Q Consensus 128 V~~a~~~~ 135 (700)
|++++.+.
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 98887653
No 187
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.60 E-value=9.2e-16 Score=142.39 Aligned_cols=85 Identities=19% Similarity=0.351 Sum_probs=77.4
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeE--EEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCc----eeccC
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED--VYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGI----YTMRG 211 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~--v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~----~~~~g 211 (700)
....++|||+||++++++++|+++|++||.|+. |+|++|+ ++.+||||||+|++. +|.+|++.||+. .+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~--- 95 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI--- 95 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC---
Confidence 355679999999999999999999999999976 9999998 799999999999999 999999999998 66
Q ss_pred CccceEEEecCCCCCC
Q 005357 212 CDQPLTVRFADPKRPR 227 (700)
Q Consensus 212 ~gr~L~V~~a~~k~~r 227 (700)
+|+.|+|+++++++.+
T Consensus 96 ~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 96 DGKTINVEFAKGSKRD 111 (131)
T ss_dssp GGCCCCCEECCCSCCC
T ss_pred CCEEEEEEECCCCCCC
Confidence 7999999999886543
No 188
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.60 E-value=2.2e-15 Score=143.79 Aligned_cols=87 Identities=22% Similarity=0.385 Sum_probs=77.4
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
....++|||+|||+++|+++|+++|+.||.|++|+|++|+.+|+++|||||+|++.++|++||+.|++..+ .| +.|+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l~ 143 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL-DG--RELR 143 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEES-SS--SEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE-CC--eEEE
Confidence 45578999999999999999999999999999999999999999999999999999999999999988554 44 5688
Q ss_pred eecccccccc
Q 005357 128 VRYADGERER 137 (700)
Q Consensus 128 V~~a~~~~~~ 137 (700)
|++++..+..
T Consensus 144 v~~a~~~~~~ 153 (158)
T 2kn4_A 144 VQMARYGRPP 153 (158)
T ss_dssp EEEECCSSCC
T ss_pred EEECCCCCCC
Confidence 8888765443
No 189
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.8e-15 Score=134.61 Aligned_cols=81 Identities=16% Similarity=0.159 Sum_probs=73.5
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~ 219 (700)
...++|||+||+++++++||+++|+.||. ++|+|+++++++++|||||+|++.++|.+||+ +|+..+ +++.|+|.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~---~gr~i~V~ 87 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANM---QHRYVELF 87 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCS---SSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeE---CCcEEEEE
Confidence 45679999999999999999999999995 49999999999999999999999999999995 788777 78999999
Q ss_pred ecCCCC
Q 005357 220 FADPKR 225 (700)
Q Consensus 220 ~a~~k~ 225 (700)
++....
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 988754
No 190
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3.1e-15 Score=132.12 Aligned_cols=85 Identities=21% Similarity=0.463 Sum_probs=73.1
Q ss_pred CCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccc
Q 005357 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPI 126 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l 126 (700)
.....++|||+|||.++|++||+++|+.| .+|+++.++.+++++|||||+|++.++|++||+.|++..+ .+ +.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~~l 84 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI-DG--NKV 84 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE-TT--EEC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeE-CC--eEE
Confidence 35677999999999999999999999977 4788889988999999999999999999999999988655 44 468
Q ss_pred eeecccccccc
Q 005357 127 QVRYADGERER 137 (700)
Q Consensus 127 ~V~~a~~~~~~ 137 (700)
+|++++.+...
T Consensus 85 ~V~~a~~~~~~ 95 (102)
T 2fc8_A 85 TLDWAKPKGEG 95 (102)
T ss_dssp EEEECCCCCSS
T ss_pred EEEEecCCCCC
Confidence 88888765543
No 191
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.59 E-value=3.4e-15 Score=131.36 Aligned_cols=81 Identities=25% Similarity=0.375 Sum_probs=75.1
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeE--------EEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceec
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED--------VYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTM 209 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~--------v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~ 209 (700)
....++|||+||++++++++|+++|++||.|++ |+|++++ ++.++|||||+|++.++|.+|++.|||..+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~- 88 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF- 88 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe-
Confidence 345689999999999999999999999999999 9999985 689999999999999999999999999987
Q ss_pred cCCccceEEEecC
Q 005357 210 RGCDQPLTVRFAD 222 (700)
Q Consensus 210 ~g~gr~L~V~~a~ 222 (700)
+|+.|+|++++
T Consensus 89 --~g~~l~V~~A~ 99 (99)
T 2la6_A 89 --SGNPIKVSFAT 99 (99)
T ss_dssp --SSSBCEEEECC
T ss_pred --CCcEEEEEecC
Confidence 78999999974
No 192
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.4e-15 Score=130.92 Aligned_cols=85 Identities=21% Similarity=0.330 Sum_probs=75.8
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
....++|||+||++++++++|+++|+.||.|++|+|++++ ++.++|||||+|++.++|.+|++. +..+ +++.|+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~---~g~~l~ 86 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMI---DGRWCD 86 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEE---TTEEEE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCee---CCeEEE
Confidence 3456899999999999999999999999999999999986 589999999999999999999993 5555 789999
Q ss_pred EEecCCCCCCC
Q 005357 218 VRFADPKRPRP 228 (700)
Q Consensus 218 V~~a~~k~~r~ 228 (700)
|++++++....
T Consensus 87 v~~a~~~~~~~ 97 (103)
T 2cqg_A 87 CKLPNSKQSQD 97 (103)
T ss_dssp EECCCTTCCCC
T ss_pred EEecCCCCcCC
Confidence 99999876543
No 193
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.9e-15 Score=135.85 Aligned_cols=86 Identities=28% Similarity=0.507 Sum_probs=73.9
Q ss_pred CCCCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcc
Q 005357 44 DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGV 123 (700)
Q Consensus 44 ~~~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~ 123 (700)
........++|||+||+.++++++|+++|+.||+|++|+|++++ +.++|||||+|++.++|++|++.|++..+ .|
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~-~g-- 96 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVV-EG-- 96 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEE-TT--
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEE-CC--
Confidence 33445678999999999999999999999999999999999985 45899999999999999999999988664 34
Q ss_pred ccceeeccccc
Q 005357 124 GPIQVRYADGE 134 (700)
Q Consensus 124 ~~l~V~~a~~~ 134 (700)
+.|+|++++.+
T Consensus 97 ~~l~V~~a~~~ 107 (109)
T 2err_A 97 RKIEVNNATAR 107 (109)
T ss_dssp EECEEEECCCS
T ss_pred EEEEEEECCCC
Confidence 55888887643
No 194
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.59 E-value=9.6e-16 Score=135.62 Aligned_cols=81 Identities=19% Similarity=0.191 Sum_probs=75.8
Q ss_pred ccceeeccCCCc------cccHHHHHHHhcCCCceeEEEEeeCCC-CCccceEEEEeCCHHHHHHHHHHhcCceeccCCc
Q 005357 141 VEYKLFVGSLNK------QATEKEVEEIFSPYGRVEDVYLMRDEL-KQSRGCGFVKYSHRDMALAAINALNGIYTMRGCD 213 (700)
Q Consensus 141 ~s~~LfV~nLp~------~~teedL~~~F~~fG~V~~v~I~~d~~-g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~g 213 (700)
.+++|||+|||. ++++++|+++|++||.|++|+|++++. +.++|||||+|++.++|.+|++.|||..+ ++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~---~g 81 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRL---DL 81 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBS---SS
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCccc---CC
Confidence 367999999999 999999999999999999999999875 89999999999999999999999999988 67
Q ss_pred -cceEEEecCCC
Q 005357 214 -QPLTVRFADPK 224 (700)
Q Consensus 214 -r~L~V~~a~~k 224 (700)
+.|+|++++++
T Consensus 82 ~r~l~V~~a~~~ 93 (100)
T 3ns6_A 82 KHRLFLYTMKDV 93 (100)
T ss_dssp SCBCEEEESHHH
T ss_pred CeEEEEEECchh
Confidence 99999999764
No 195
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.59 E-value=1.7e-15 Score=137.50 Aligned_cols=81 Identities=28% Similarity=0.481 Sum_probs=74.9
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
....++|||+||+++++++||+++|++||.|++|+|++++ ++.++|||||+|++.++|.+|++.||+..+ +++.|+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~ 113 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQV---GTKRLK 113 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEE---TTEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEE---CCEEEE
Confidence 4456899999999999999999999999999999999885 588999999999999999999999999988 799999
Q ss_pred EEecC
Q 005357 218 VRFAD 222 (700)
Q Consensus 218 V~~a~ 222 (700)
|+|++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99974
No 196
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.5e-15 Score=136.59 Aligned_cols=87 Identities=18% Similarity=0.325 Sum_probs=72.4
Q ss_pred CCCCCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhccc-ccCCC
Q 005357 43 PDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQ-HTLPG 121 (700)
Q Consensus 43 ~~~~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~-~~~~g 121 (700)
.+.....++++|||+|||+++||+||+++|+.||.|++|+|+++ ||||||+|++.++|++||+.|++. ..+.|
T Consensus 23 ~~~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G 96 (119)
T 2ad9_A 23 DSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRG 96 (119)
T ss_dssp CTTSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTT
T ss_pred cccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 33445567899999999999999999999999999999999876 589999999999999999998753 34444
Q ss_pred ccccceeecccccccc
Q 005357 122 GVGPIQVRYADGERER 137 (700)
Q Consensus 122 ~~~~l~V~~a~~~~~~ 137 (700)
+.|+|.+++.+...
T Consensus 97 --r~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 97 --QPIYIQFSNHKELK 110 (119)
T ss_dssp --BCCEEEECSSSSCC
T ss_pred --eEEEEEEccCCCCC
Confidence 56888888765443
No 197
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=4.8e-15 Score=130.37 Aligned_cols=81 Identities=35% Similarity=0.474 Sum_probs=70.1
Q ss_pred CCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccc
Q 005357 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGP 125 (700)
Q Consensus 46 ~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~ 125 (700)
....+.++|||+|||.++|+++|+++|+.||+|++|+++++ +|||||+|++.++|++||+.|++..+ .| +.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~-~g--~~ 80 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPL-RG--KQ 80 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCB-TT--BC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEe-CC--ce
Confidence 34567799999999999999999999999999999999865 57999999999999999999988665 34 56
Q ss_pred ceeecccccc
Q 005357 126 IQVRYADGER 135 (700)
Q Consensus 126 l~V~~a~~~~ 135 (700)
|+|++++.+.
T Consensus 81 l~v~~a~~~~ 90 (99)
T 2cpj_A 81 LRVRFACHSA 90 (99)
T ss_dssp CEEEESSCCS
T ss_pred EEEEEcCCCC
Confidence 8888887543
No 198
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=6.2e-15 Score=132.08 Aligned_cols=80 Identities=20% Similarity=0.343 Sum_probs=68.6
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCC---cccc
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPG---GVGP 125 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g---~~~~ 125 (700)
...++|||+|||+++|++||+++|+.||+|++|+|+.| |||||+|++.++|++||+.||+..+ .+ ..+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~-~g~~~~~~~ 84 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKF-RSHEGETAY 84 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEE-ECTTSCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCc-cCCcCcceE
Confidence 34689999999999999999999999999999999886 7999999999999999999988655 33 1256
Q ss_pred ceeeccccccc
Q 005357 126 IQVRYADGERE 136 (700)
Q Consensus 126 l~V~~a~~~~~ 136 (700)
|+|++++....
T Consensus 85 i~V~~a~~~~~ 95 (108)
T 1x4c_A 85 IRVKVDGPRSP 95 (108)
T ss_dssp EEEEESSCCSC
T ss_pred EEEEeCCCCCC
Confidence 88888876443
No 199
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2e-15 Score=135.76 Aligned_cols=82 Identities=22% Similarity=0.383 Sum_probs=76.0
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
....++|||+||+.++++++|+++|++||.|++|+|++++. .++|||||+|++.++|.+|++.|||..+ +|+.|+|
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l~V 101 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVV---EGRKIEV 101 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEE---TTEECEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEE---CCEEEEE
Confidence 44578999999999999999999999999999999998854 4899999999999999999999999988 7999999
Q ss_pred EecCCC
Q 005357 219 RFADPK 224 (700)
Q Consensus 219 ~~a~~k 224 (700)
++++++
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 999876
No 200
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.59 E-value=8.8e-16 Score=135.53 Aligned_cols=85 Identities=15% Similarity=0.320 Sum_probs=73.2
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
....++|||+|||+++|+++|+++|+.||.|.+ .++.++.+++++|||||+|++.++|++||+ |++..+ .| +.|+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~-~g--~~l~ 88 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV-FG--NEIK 88 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCB-TT--BCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEE-CC--cEEE
Confidence 446789999999999999999999999999988 777787889999999999999999999998 988655 33 5688
Q ss_pred eecccccccc
Q 005357 128 VRYADGERER 137 (700)
Q Consensus 128 V~~a~~~~~~ 137 (700)
|++++.+..+
T Consensus 89 V~~a~~~~~~ 98 (101)
T 1fj7_A 89 LEKPKGRDGT 98 (101)
T ss_dssp EECCSCCCCS
T ss_pred EEEcCCCCCC
Confidence 8888765443
No 201
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5.3e-15 Score=135.42 Aligned_cols=83 Identities=19% Similarity=0.377 Sum_probs=73.6
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcC--ceeccCCccce
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNG--IYTMRGCDQPL 216 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng--~~~~~g~gr~L 216 (700)
...+++|||+||+++++++||+++|+.||.|++|+|+++ ||||||+|++.++|.+|++.|++ ..+ +|+.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l---~Gr~l 99 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVL---RGQPI 99 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCB---TTBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceE---CCeEE
Confidence 345689999999999999999999999999999999876 79999999999999999999885 345 68999
Q ss_pred EEEecCCCCCCCC
Q 005357 217 TVRFADPKRPRPG 229 (700)
Q Consensus 217 ~V~~a~~k~~r~~ 229 (700)
+|.|++.+..+..
T Consensus 100 ~V~~a~~k~~~~~ 112 (119)
T 2ad9_A 100 YIQFSNHKELKTD 112 (119)
T ss_dssp EEEECSSSSCCCC
T ss_pred EEEEccCCCCCcc
Confidence 9999998765543
No 202
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=4.9e-15 Score=128.15 Aligned_cols=81 Identities=19% Similarity=0.221 Sum_probs=76.0
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~ 219 (700)
...++|||+||+++++++||+++|+.| .|++|+|+++.++.++|||||+|++.++|.+|++ ||+..+ +++.|+|.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~---~gr~i~v~ 82 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYM---GGRYIEVF 82 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEE---TTEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCcee---CCcEEEEE
Confidence 446799999999999999999999999 9999999999889999999999999999999999 999988 79999999
Q ss_pred ecCCCC
Q 005357 220 FADPKR 225 (700)
Q Consensus 220 ~a~~k~ 225 (700)
+++++.
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 998864
No 203
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.58 E-value=1.7e-15 Score=142.05 Aligned_cols=80 Identities=16% Similarity=0.285 Sum_probs=70.1
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCC---eeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccc
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGN---VIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVG 124 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~---V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~ 124 (700)
....++|||+|||+++|++||+++|+.||. |++|+|++|+. |+++|||||+|++.++|++||+ +++.. +.+ +
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~-l~g--r 115 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRES-MGH--R 115 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEE-SSS--S
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCE-ECC--E
Confidence 456789999999999999999999999999 89999999987 9999999999999999999999 87744 444 4
Q ss_pred cceeeccc
Q 005357 125 PIQVRYAD 132 (700)
Q Consensus 125 ~l~V~~a~ 132 (700)
.|+|.++.
T Consensus 116 ~i~V~~a~ 123 (136)
T 2hgl_A 116 YIEVFKSH 123 (136)
T ss_dssp EEEEEECC
T ss_pred EEEEEECC
Confidence 57776654
No 204
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.58 E-value=2.5e-15 Score=127.36 Aligned_cols=66 Identities=20% Similarity=0.381 Sum_probs=60.7
Q ss_pred CceEEEeCCCCCC------cHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhccccc
Q 005357 51 FAKLFVGSVPKTA------REEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHT 118 (700)
Q Consensus 51 ~~tLfVgnLP~~v------teedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~ 118 (700)
+++|||+|||.++ ++++|+++|+.||.|.+|+|+ +.+|+++|||||+|++.++|++|++.|++..+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 72 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL 72 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCccc
Confidence 4799999999999 889999999999999999987 45799999999999999999999999988555
No 205
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=7e-15 Score=127.57 Aligned_cols=79 Identities=24% Similarity=0.420 Sum_probs=72.2
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
....++|||+||++++++++|+++|++||.|++|+|+++ ||||+|++.++|.+|++.||+..+ +++.|+|
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~-------~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~V 76 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD-------YAFVHMERAEDAVEAIRGLDNTEF---QGKRMHV 76 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS-------EEEEEESCHHHHHHHHHHHTTEEE---TTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC-------EEEEEECCHHHHHHHHHHhCCCee---CCcEEEE
Confidence 345689999999999999999999999999999999744 999999999999999999999988 7999999
Q ss_pred EecCCCCCC
Q 005357 219 RFADPKRPR 227 (700)
Q Consensus 219 ~~a~~k~~r 227 (700)
++++++..+
T Consensus 77 ~~a~~~~~~ 85 (92)
T 2dgt_A 77 QLSTSRLRT 85 (92)
T ss_dssp EESSCCCSC
T ss_pred EEccCCCCC
Confidence 999887543
No 206
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=5.1e-15 Score=129.73 Aligned_cols=79 Identities=22% Similarity=0.389 Sum_probs=72.5
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCC--ccceE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGC--DQPLT 217 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~--gr~L~ 217 (700)
..+++|||+||++++++++|+++|++||.|++|+|..+ +|||||+|++.++|.+|++.||+..+ + ++.|+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~---~~~g~~l~ 86 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPL---GGPDRRLR 86 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBC---SSSSCBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEe---CCCCcEEE
Confidence 44679999999999999999999999999999998764 78999999999999999999999987 5 89999
Q ss_pred EEecCCCCC
Q 005357 218 VRFADPKRP 226 (700)
Q Consensus 218 V~~a~~k~~ 226 (700)
|+|++++..
T Consensus 87 V~~a~~~~~ 95 (97)
T 1why_A 87 VDFAKSGPS 95 (97)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCCC
Confidence 999998754
No 207
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.58 E-value=2.1e-15 Score=153.54 Aligned_cols=81 Identities=15% Similarity=0.351 Sum_probs=71.1
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccC--CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccc
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHG--NVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPI 126 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G--~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l 126 (700)
...++|||+||++++|+++|+++|+.|| +|++|+|++|+.|+++||||||+|++.++|++||+.|++..+ .+ +.|
T Consensus 66 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~-~G--r~l 142 (229)
T 3q2s_C 66 GKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL-HG--QNP 142 (229)
T ss_dssp ---CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCB-TT--BCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeE-CC--EEe
Confidence 3678999999999999999999999999 999999999999999999999999999999999999987555 34 457
Q ss_pred eeeccc
Q 005357 127 QVRYAD 132 (700)
Q Consensus 127 ~V~~a~ 132 (700)
+|++++
T Consensus 143 ~V~~a~ 148 (229)
T 3q2s_C 143 VVTPVN 148 (229)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 777764
No 208
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.58 E-value=3.9e-15 Score=136.53 Aligned_cols=84 Identities=20% Similarity=0.374 Sum_probs=78.5
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
...+++|||+||+.++++++|+++|++||.|++|+|++++++.++|||||+|++.++|.+|++.||+..+ +++.|+|
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l~V 108 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPL---DGRPMDI 108 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEES---SSCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEE---CCcEEEE
Confidence 3456899999999999999999999999999999999998889999999999999999999999999987 7899999
Q ss_pred EecCCCC
Q 005357 219 RFADPKR 225 (700)
Q Consensus 219 ~~a~~k~ 225 (700)
+++..+.
T Consensus 109 ~~a~~~~ 115 (124)
T 2kt5_A 109 QLVASQI 115 (124)
T ss_dssp EEECCTT
T ss_pred EEeCCCC
Confidence 9998764
No 209
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=6.9e-15 Score=129.87 Aligned_cols=83 Identities=27% Similarity=0.362 Sum_probs=73.6
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
....++|||+||++++++++|+++|+.|+ .|+++++. ++.++|||||+|++.++|.+|++.||+..+ +++.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~ 85 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI---DGNKVT 85 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE---TTEECE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeE---CCeEEE
Confidence 45578999999999999999999999873 56677774 688999999999999999999999999988 799999
Q ss_pred EEecCCCCCC
Q 005357 218 VRFADPKRPR 227 (700)
Q Consensus 218 V~~a~~k~~r 227 (700)
|+|++++..+
T Consensus 86 V~~a~~~~~~ 95 (102)
T 2fc8_A 86 LDWAKPKGEG 95 (102)
T ss_dssp EEECCCCCSS
T ss_pred EEEecCCCCC
Confidence 9999987654
No 210
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.58 E-value=3.9e-15 Score=127.87 Aligned_cols=80 Identities=20% Similarity=0.368 Sum_probs=75.1
Q ss_pred ccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEE
Q 005357 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219 (700)
Q Consensus 141 ~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~ 219 (700)
..++|||+||++++++++|+++|+.||.|++|+|+++. ++.++|||||+|++.++|.+|+ .||+..+ +++.|+|+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~---~g~~l~V~ 80 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLF---RGRQIKVI 80 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEE---TTEECEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEE---CCcEEEEE
Confidence 35799999999999999999999999999999999986 7899999999999999999999 8999988 79999999
Q ss_pred ecCCC
Q 005357 220 FADPK 224 (700)
Q Consensus 220 ~a~~k 224 (700)
+++++
T Consensus 81 ~a~~~ 85 (89)
T 3ucg_A 81 PKRTN 85 (89)
T ss_dssp ETTTT
T ss_pred EccCC
Confidence 99875
No 211
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=6e-15 Score=129.78 Aligned_cols=81 Identities=31% Similarity=0.537 Sum_probs=73.9
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
....++|||+||++++++++|+++|++||.|++|+|.++ +|||||+|++.++|.+|++.||+..+ +++.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~---~g~~l~v 83 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPL---RGKQLRV 83 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCB---TTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEe---CCceEEE
Confidence 345679999999999999999999999999999999865 79999999999999999999999987 7899999
Q ss_pred EecCCCCCC
Q 005357 219 RFADPKRPR 227 (700)
Q Consensus 219 ~~a~~k~~r 227 (700)
+|++++...
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2cpj_A 84 RFACHSASL 92 (99)
T ss_dssp EESSCCSCC
T ss_pred EEcCCCCCC
Confidence 999887543
No 212
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.58 E-value=5.8e-15 Score=132.49 Aligned_cols=77 Identities=35% Similarity=0.618 Sum_probs=70.8
Q ss_pred cccceeeccCCCcc-ccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 140 AVEYKLFVGSLNKQ-ATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 140 ~~s~~LfV~nLp~~-~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
...++|||+||+++ +++++|+++|++||.|++|+| ++|||||+|++.++|.+|++.||+..+ +++.|+|
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~V 94 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVL---AGQTLDI 94 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEE---TTEECCE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEE---CCeEEEE
Confidence 44589999999999 999999999999999999998 478999999999999999999999988 7999999
Q ss_pred EecCCCCC
Q 005357 219 RFADPKRP 226 (700)
Q Consensus 219 ~~a~~k~~ 226 (700)
++++.++.
T Consensus 95 ~~a~~~~~ 102 (110)
T 1wf1_A 95 NMAGEPKP 102 (110)
T ss_dssp EESCCCCS
T ss_pred EECCCCCC
Confidence 99986544
No 213
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.58 E-value=4e-15 Score=136.22 Aligned_cols=83 Identities=18% Similarity=0.391 Sum_probs=76.3
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
...++|||+||++++++++|+++|++||.|++|+|++++ ++.++|||||+|++.++|.+|+ .||+..+ +++.|+|
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~---~g~~l~V 109 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVF---RGRTIKV 109 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEE---TTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeE---CCeEEEE
Confidence 346799999999999999999999999999999999985 6899999999999999999999 7999988 7999999
Q ss_pred EecCCCCC
Q 005357 219 RFADPKRP 226 (700)
Q Consensus 219 ~~a~~k~~ 226 (700)
+++++...
T Consensus 110 ~~a~~~~~ 117 (124)
T 2jwn_A 110 LPKRTNMP 117 (124)
T ss_dssp EESSCCCS
T ss_pred EECCCCCC
Confidence 99987543
No 214
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.9e-15 Score=132.82 Aligned_cols=80 Identities=19% Similarity=0.272 Sum_probs=74.6
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~ 219 (700)
...++|||+||++++|+++|+++|+.||.|++|+|+++..+.++|||||+|++.++|.+|++ +++..+ +|+.|+|.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~---~gr~l~V~ 84 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKY---KETDLLIL 84 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCC---TTTTCEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEE---CCEEEEEE
Confidence 34679999999999999999999999999999999999889999999999999999999999 898877 79999999
Q ss_pred ecCC
Q 005357 220 FADP 223 (700)
Q Consensus 220 ~a~~ 223 (700)
++..
T Consensus 85 ~~~~ 88 (103)
T 1s79_A 85 FKDD 88 (103)
T ss_dssp EHHH
T ss_pred EchH
Confidence 8765
No 215
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.7e-15 Score=132.05 Aligned_cols=83 Identities=17% Similarity=0.163 Sum_probs=75.6
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeE-EEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVED-VYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~-v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
...++|||+||+++++++||+++|+.||.|++ |+|+++++++++|||||+|++.++|.+||+. ++..+ +++.|+|
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~---~gr~i~v 88 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERI---GHRYIEI 88 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCS---SSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-Ccchh---CCcEEEE
Confidence 44679999999999999999999999999987 8898888899999999999999999999997 88777 7899999
Q ss_pred EecCCCCC
Q 005357 219 RFADPKRP 226 (700)
Q Consensus 219 ~~a~~k~~ 226 (700)
.++..+..
T Consensus 89 ~~~~~~~~ 96 (104)
T 1wg5_A 89 FKSSRAEV 96 (104)
T ss_dssp EEECTTTS
T ss_pred EECCHHHH
Confidence 99877643
No 216
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=9.5e-15 Score=128.10 Aligned_cols=81 Identities=25% Similarity=0.419 Sum_probs=68.4
Q ss_pred CCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccc
Q 005357 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPI 126 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l 126 (700)
.....++|||+|||.++|+++|+++|+.||.|. ++++.+ +++|||||+|++.++|++||+.|++..+ .| +.|
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l 86 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRL-GT--DTL 86 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCS-SS--SCC
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEE-CC--cEE
Confidence 345678999999999999999999999999997 666654 5789999999999999999999988655 44 458
Q ss_pred eeecccccc
Q 005357 127 QVRYADGER 135 (700)
Q Consensus 127 ~V~~a~~~~ 135 (700)
+|++++..+
T Consensus 87 ~V~~a~~~~ 95 (97)
T 2e5j_A 87 RVALARQQR 95 (97)
T ss_dssp EEEECCCCC
T ss_pred EEEEcCCCC
Confidence 888876543
No 217
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=7.9e-15 Score=131.14 Aligned_cols=82 Identities=17% Similarity=0.220 Sum_probs=71.7
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~ 219 (700)
..+++|||+||+++++++||+++|++||.|++|+|+++ ||||||+|++.++|.+|++.|++..+. .+|+.|+|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~-i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVY-IAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCB-SSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCce-ECCEEEEEE
Confidence 45679999999999999999999999999999998864 799999999999999999999765421 168999999
Q ss_pred ecCCCCCC
Q 005357 220 FADPKRPR 227 (700)
Q Consensus 220 ~a~~k~~r 227 (700)
|++.+..+
T Consensus 87 ~a~~~~~~ 94 (104)
T 1wex_A 87 YSTSKRIT 94 (104)
T ss_dssp ECSSSSCC
T ss_pred EccCcccc
Confidence 99887544
No 218
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.57 E-value=4.1e-15 Score=131.88 Aligned_cols=81 Identities=15% Similarity=0.212 Sum_probs=71.9
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
...+++|||+||+++++++||+++|+.||.|++|+|+++ ||||||+|++.++|.+|++.|++..+.. +|++|+|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~AFVef~~~~~A~~Av~~ln~~~~~i-~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-----KRQALVEFEDVLGACNAVNYAADNQIYI-AGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCEEE-TTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhcCCCcee-CCcEEEE
Confidence 345789999999999999999999999999999999854 7999999999999999999999875311 6899999
Q ss_pred EecCCCC
Q 005357 219 RFADPKR 225 (700)
Q Consensus 219 ~~a~~k~ 225 (700)
.|++.++
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9998764
No 219
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.57 E-value=2e-15 Score=141.51 Aligned_cols=122 Identities=11% Similarity=0.028 Sum_probs=76.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHhcccccCCCccccceeecccccccccCcccceeeccCCCccccHHHHHHHhcCCCc---e
Q 005357 93 QGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGR---V 169 (700)
Q Consensus 93 kG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~~a~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~---V 169 (700)
+|++|.+|+..+++-..+...-. ...+... ..............++|||+||++++|++||+++|+.||. |
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~--~~gg~~~----g~g~~~~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v 74 (136)
T 2hgl_A 1 MGSSHHHHHHSSGLVPRGSHMAS--MTGGQQM----GRGSMMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGA 74 (136)
T ss_dssp ----------------------------------------CCSCSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSS
T ss_pred CccccccccchHHHHhhccCCCc--ccCCCCC----CCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCce
Confidence 35778888777776655543321 1111100 0000011112344679999999999999999999999999 8
Q ss_pred eEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEecCCC
Q 005357 170 EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224 (700)
Q Consensus 170 ~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~~k 224 (700)
++|+|++++.++++|||||+|++.++|.+||+ +|+..+ +++.|+|.++..+
T Consensus 75 ~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l---~gr~i~V~~a~~~ 125 (136)
T 2hgl_A 75 AGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESM---GHRYIEVFKSHRT 125 (136)
T ss_dssp TTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEES---SSSEEEEEECCHH
T ss_pred eEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEE---CCEEEEEEECChH
Confidence 99999999889999999999999999999999 999887 7999999998754
No 220
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.3e-14 Score=125.36 Aligned_cols=79 Identities=34% Similarity=0.606 Sum_probs=68.5
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
..+.++|||+|||.++++++|+++|+.||+|++|+++ +|||||+|++.++|++|++.|++..+ .+ +.|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~~l~ 73 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKL-HG--VNIN 73 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBC-SS--CBCE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCcc-CC--cEEE
Confidence 4567999999999999999999999999999999997 47999999999999999999987554 44 5588
Q ss_pred eecccccccc
Q 005357 128 VRYADGERER 137 (700)
Q Consensus 128 V~~a~~~~~~ 137 (700)
|++++.+...
T Consensus 74 v~~a~~~~~~ 83 (90)
T 2dnq_A 74 VEASKNKSKA 83 (90)
T ss_dssp EECSSCCCCC
T ss_pred EEECCCCCCC
Confidence 8888765543
No 221
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.57 E-value=4.4e-15 Score=132.46 Aligned_cols=83 Identities=17% Similarity=0.282 Sum_probs=71.2
Q ss_pred CCCCceEEEeCCCCCC------cHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCC
Q 005357 48 GSSFAKLFVGSVPKTA------REEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPG 121 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~v------teedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g 121 (700)
....++|||+|||+++ |+++|+++|+.||.|++|+|+ +.+|+++|||||+|++.++|++||+.|++..+ .|
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~-~g 88 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL-DK 88 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEEC-ST
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCccc-CC
Confidence 4457899999999999 889999999999999999988 46799999999999999999999999988554 44
Q ss_pred ccccceeeccccc
Q 005357 122 GVGPIQVRYADGE 134 (700)
Q Consensus 122 ~~~~l~V~~a~~~ 134 (700)
+ +.|+|.+++..
T Consensus 89 ~-~~l~V~~a~~~ 100 (105)
T 2nlw_A 89 Q-HTFRVNLFTDF 100 (105)
T ss_dssp T-CEEEEECSCCC
T ss_pred C-ceEEEEEcchH
Confidence 2 25888887643
No 222
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=8.8e-16 Score=138.68 Aligned_cols=84 Identities=24% Similarity=0.436 Sum_probs=76.9
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCC-CCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDEL-KQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~-g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
...++|||+||++++++++|+++|+.||.|++|+|+.++. +.++|||||+|++.++|.+|+ .||+..+ +++.|+|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~---~g~~l~V 98 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRL---LGVPIIV 98 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEE---TTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEe---CCeEEEE
Confidence 3467999999999999999999999999999999998874 889999999999999999999 9999988 7999999
Q ss_pred EecCCCCCC
Q 005357 219 RFADPKRPR 227 (700)
Q Consensus 219 ~~a~~k~~r 227 (700)
++++++..+
T Consensus 99 ~~a~~~~~~ 107 (114)
T 2cq4_A 99 QASQAEKNR 107 (114)
T ss_dssp EEHHHHHHH
T ss_pred EecCCCccC
Confidence 999876543
No 223
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.57 E-value=2.3e-15 Score=133.04 Aligned_cols=82 Identities=26% Similarity=0.449 Sum_probs=73.7
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC--CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccce
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE--LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPL 216 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~--~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L 216 (700)
....++|||+||++++++++|+++|+.|| |++|+|++++ ++.++|||||+|++.++|.+|+ .|++..+ +|+.|
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~---~g~~l 90 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL---GNRRI 90 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCB---TTBCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEE---CCeEE
Confidence 34568999999999999999999999999 9999999986 6899999999999999999999 8999988 79999
Q ss_pred EEEecCCCC
Q 005357 217 TVRFADPKR 225 (700)
Q Consensus 217 ~V~~a~~k~ 225 (700)
+|++++++.
T Consensus 91 ~V~~a~~~~ 99 (100)
T 2j76_E 91 RVDVADQAQ 99 (100)
T ss_dssp CCEECCCSC
T ss_pred EEEeccCCC
Confidence 999998764
No 224
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=7.8e-15 Score=132.30 Aligned_cols=85 Identities=27% Similarity=0.538 Sum_probs=77.0
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceecc-----CCcc
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMR-----GCDQ 214 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~-----g~gr 214 (700)
...++|||+||++++++++|+++|+.||.|++|+|++++++.++|||||+|++.++|.+|++.|||..+.. ..++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 45689999999999999999999999999999999999888999999999999999999999999987721 1368
Q ss_pred ceEEEecCCC
Q 005357 215 PLTVRFADPK 224 (700)
Q Consensus 215 ~L~V~~a~~k 224 (700)
.|+|+|++++
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999999875
No 225
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.57 E-value=5.9e-15 Score=132.68 Aligned_cols=85 Identities=28% Similarity=0.499 Sum_probs=74.2
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
....++|||+||++++++++|+++|+.||.|++|+|+++. ++.++|||||+|++.++|.+|++.++ ..+ +|+.|+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l---~g~~l~ 97 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HEL---DSKTID 97 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEE---TTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcC---CCEEEE
Confidence 3456899999999999999999999999999999999986 58999999999999999999999764 555 789999
Q ss_pred EEecCCCCCC
Q 005357 218 VRFADPKRPR 227 (700)
Q Consensus 218 V~~a~~k~~r 227 (700)
|+++.++..+
T Consensus 98 V~~a~~~~~~ 107 (109)
T 2rs2_A 98 PKVAFPRRAQ 107 (109)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCCCCC
Confidence 9999987654
No 226
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=6e-15 Score=131.86 Aligned_cols=86 Identities=24% Similarity=0.352 Sum_probs=75.8
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCc-eeEEEEe-eCC-CCCccceEEEEeCCHHHHHHHHHHhc--CceeccCCcc
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGR-VEDVYLM-RDE-LKQSRGCGFVKYSHRDMALAAINALN--GIYTMRGCDQ 214 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~-V~~v~I~-~d~-~g~srG~aFVeF~~~e~A~~Ai~~Ln--g~~~~~g~gr 214 (700)
...++|||+||++++++++|+++|++||. |++|+|+ .+. ++.++|||||+|++.++|.+|++.|+ +..+ +++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~---~g~ 82 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQL---WGH 82 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB---TTB
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCcee---cCC
Confidence 45689999999999999999999999998 9999998 554 46899999999999999999999996 4666 789
Q ss_pred ceEEEecCCCCCCC
Q 005357 215 PLTVRFADPKRPRP 228 (700)
Q Consensus 215 ~L~V~~a~~k~~r~ 228 (700)
.|+|+|++++....
T Consensus 83 ~l~V~~a~~~~~~~ 96 (109)
T 2dis_A 83 QIAVDWAEPEIDVD 96 (109)
T ss_dssp CCEEEESCSSCSTT
T ss_pred eEEEEEcCCCCCcC
Confidence 99999999876543
No 227
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=3e-15 Score=131.24 Aligned_cols=82 Identities=16% Similarity=0.159 Sum_probs=74.5
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
...++|||+||+++++++||+++|+.||.|++++++.++ ++.++|||||+|++.++|.+|++.||+..+ +++.|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~---~g~~l~V 89 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI---GSRKVKL 89 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEE---TTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCee---CCeEEEE
Confidence 446789999999999999999999999999987776664 688999999999999999999999999988 7999999
Q ss_pred EecCCC
Q 005357 219 RFADPK 224 (700)
Q Consensus 219 ~~a~~k 224 (700)
++++.+
T Consensus 90 ~~a~~~ 95 (98)
T 2cqp_A 90 VLGSGP 95 (98)
T ss_dssp EESSCS
T ss_pred EEcCCC
Confidence 998764
No 228
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.1e-15 Score=131.68 Aligned_cols=84 Identities=31% Similarity=0.508 Sum_probs=77.8
Q ss_pred ccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEE
Q 005357 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219 (700)
Q Consensus 141 ~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~ 219 (700)
..++|||+||+.++++++|+++|+.||.|++|+|+++. ++.++|||||+|++.++|.+|++.|||..+ +|+.|+|+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v~ 83 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF---SGRALRVD 83 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSC---SSSCBEEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCee---CCcEEEEE
Confidence 45799999999999999999999999999999999885 688999999999999999999999999888 79999999
Q ss_pred ecCCCCCC
Q 005357 220 FADPKRPR 227 (700)
Q Consensus 220 ~a~~k~~r 227 (700)
+++++..+
T Consensus 84 ~a~~~~~~ 91 (104)
T 1p1t_A 84 NAASEKNK 91 (104)
T ss_dssp ETTCTTHH
T ss_pred eCCCccch
Confidence 99987543
No 229
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.57 E-value=2.3e-15 Score=134.75 Aligned_cols=81 Identities=12% Similarity=0.241 Sum_probs=70.3
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCC---eeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccc
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGN---VIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVG 124 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~---V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~ 124 (700)
....++|||+|||+++|++||+++|+.||. |.+|+|+.|+. |+++|||||+|++.++|++||+ +++ ..+.++
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~-~~~~gr-- 82 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHR-MYMGQR-- 82 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTT-CCSSSS--
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCc-ceeCCe--
Confidence 456789999999999999999999999998 89999999987 9999999999999999999999 876 445444
Q ss_pred cceeecccc
Q 005357 125 PIQVRYADG 133 (700)
Q Consensus 125 ~l~V~~a~~ 133 (700)
.|+|.++..
T Consensus 83 ~i~V~~a~~ 91 (107)
T 2lmi_A 83 YVEVYEINN 91 (107)
T ss_dssp CCCCEECCH
T ss_pred EEEEEECCH
Confidence 466766543
No 230
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.56 E-value=3.1e-15 Score=143.50 Aligned_cols=81 Identities=19% Similarity=0.254 Sum_probs=75.2
Q ss_pred ccceeeccCCCccccHHHHHHHhcCCC--ceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 141 VEYKLFVGSLNKQATEKEVEEIFSPYG--RVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 141 ~s~~LfV~nLp~~~teedL~~~F~~fG--~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
..++|||+||++++++++|+++|+.|| .|++|+|++|+ +|.++|||||+|++.++|.+||+.|||..+ +|+.|+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~---~Gr~l~ 130 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVL---NGEKVD 130 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEE---TTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE---CCeEeE
Confidence 357999999999999999999999999 99999999986 689999999999999999999999999998 799999
Q ss_pred EEecCCC
Q 005357 218 VRFADPK 224 (700)
Q Consensus 218 V~~a~~k 224 (700)
|++++++
T Consensus 131 V~~a~~~ 137 (156)
T 3n9u_C 131 VRPATRQ 137 (156)
T ss_dssp EEECCHH
T ss_pred EEEcCCC
Confidence 9999764
No 231
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.56 E-value=4.3e-15 Score=131.08 Aligned_cols=78 Identities=29% Similarity=0.537 Sum_probs=72.5
Q ss_pred ceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEecC
Q 005357 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222 (700)
Q Consensus 143 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~ 222 (700)
++|||+||++++++++|+++|++||.|++|+|+.+ ++|||||+|++.++|.+|++.|++..+ +++.|+|++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~V~~a~ 73 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVI---CGSRVRVELST 73 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCS---SSCCCEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeE---CCcEEEEEEcc
Confidence 47999999999999999999999999999999887 789999999999999999999999987 78999999999
Q ss_pred CCCCC
Q 005357 223 PKRPR 227 (700)
Q Consensus 223 ~k~~r 227 (700)
++..+
T Consensus 74 ~~~~~ 78 (101)
T 2hvz_A 74 GMPRR 78 (101)
T ss_dssp SCCCS
T ss_pred CCCCc
Confidence 87533
No 232
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.1e-15 Score=136.22 Aligned_cols=88 Identities=18% Similarity=0.313 Sum_probs=71.7
Q ss_pred CCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccc
Q 005357 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPI 126 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l 126 (700)
.....++|||+|||.++|+++|+++|+.||.|.+|.+..+..+++++|||||+|++.++|++||+.|++..+ .| +.|
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~-~g--~~l 97 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKL-YG--KIL 97 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBC-SS--CBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEe-CC--cEE
Confidence 345679999999999999999999999999995443333333789999999999999999999999988555 44 568
Q ss_pred eeecccccccc
Q 005357 127 QVRYADGERER 137 (700)
Q Consensus 127 ~V~~a~~~~~~ 137 (700)
+|++++.....
T Consensus 98 ~v~~a~~~~~~ 108 (115)
T 2cpx_A 98 VIEFGKNKKQR 108 (115)
T ss_dssp EEEECCCCSCC
T ss_pred EEEEccCCCCC
Confidence 88888766544
No 233
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.5e-15 Score=136.11 Aligned_cols=83 Identities=12% Similarity=0.074 Sum_probs=76.5
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCce-eEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRV-EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V-~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
....++|||+||+++++++||+++|+.||.| +.|+|++++++.++|||||+|++.++|.+||+. |+..+ +++.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~---~gr~i~ 87 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKL---NGREAF 87 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEE---TTEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCcc---CCeEEE
Confidence 3456799999999999999999999999999 899999999999999999999999999999987 88877 799999
Q ss_pred EEecCCCC
Q 005357 218 VRFADPKR 225 (700)
Q Consensus 218 V~~a~~k~ 225 (700)
|.++..+.
T Consensus 88 v~~a~~~~ 95 (114)
T 2cpy_A 88 VHVVTLED 95 (114)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99998764
No 234
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.56 E-value=8.6e-15 Score=141.21 Aligned_cols=87 Identities=28% Similarity=0.377 Sum_probs=75.8
Q ss_pred CCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccc
Q 005357 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPI 126 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l 126 (700)
.....++|||+|||.++++++|+++|+.||.|.+|.|+.++.||.++|||||+|.+.++|++||+.|++..+ .| +.|
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~-~g--~~l 144 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI-MG--QTI 144 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEE-TT--EEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEE-CC--EEE
Confidence 345678999999999999999999999999999999999999999999999999999999999999988655 34 558
Q ss_pred eeeccccccc
Q 005357 127 QVRYADGERE 136 (700)
Q Consensus 127 ~V~~a~~~~~ 136 (700)
.|.++.....
T Consensus 145 ~V~~a~~~~~ 154 (165)
T 1rk8_A 145 QVDWCFVKGP 154 (165)
T ss_dssp EEEESEECC-
T ss_pred EEEEecCCCC
Confidence 8888765443
No 235
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=8e-15 Score=131.36 Aligned_cols=82 Identities=18% Similarity=0.427 Sum_probs=75.0
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
....++|||+||+.++++++|+++|+.||.|++|+|+++ +|||||+|++.++|.+|++.|++..+ +++.|+|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v 93 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI---EGHVVKC 93 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEE---CCcEEEE
Confidence 345679999999999999999999999999999999876 88999999999999999999999988 7999999
Q ss_pred EecCCCCCCC
Q 005357 219 RFADPKRPRP 228 (700)
Q Consensus 219 ~~a~~k~~r~ 228 (700)
+|++++....
T Consensus 94 ~~a~~~~~~~ 103 (109)
T 1x4g_A 94 YWGKESPDMT 103 (109)
T ss_dssp ECCCCCCSSC
T ss_pred EecCCCCCCC
Confidence 9999876443
No 236
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=4.4e-15 Score=133.93 Aligned_cols=78 Identities=23% Similarity=0.313 Sum_probs=67.0
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccccee
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQV 128 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V 128 (700)
.+.++|||+|||+++|++||+++|+.| .|++|+|++|+. |+++|||||+|++.++|++|| .+++ ..+.++ .|+|
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~-~~~~gr--~i~V 87 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNR-MLMIQR--YVEV 87 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTT-EEETTE--EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCC-CeECCe--EEEE
Confidence 446899999999999999999999999 899999999976 999999999999999999999 5766 445443 4666
Q ss_pred eccc
Q 005357 129 RYAD 132 (700)
Q Consensus 129 ~~a~ 132 (700)
..+.
T Consensus 88 ~~a~ 91 (109)
T 2dnn_A 88 SPAT 91 (109)
T ss_dssp EECC
T ss_pred EECC
Confidence 5553
No 237
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.56 E-value=8.4e-15 Score=129.87 Aligned_cols=83 Identities=14% Similarity=0.250 Sum_probs=69.4
Q ss_pred CCCCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhccccc-CCCc
Q 005357 44 DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHT-LPGG 122 (700)
Q Consensus 44 ~~~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~-~~g~ 122 (700)
+.....++++|||+|||.++|++||+++|++||.|++|+++++ ||||||+|++.++|++||+.|++..+ +.|
T Consensus 14 ~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~G- 86 (100)
T 3r27_A 14 DPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAG- 86 (100)
T ss_dssp ---CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETT-
T ss_pred ccccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCC-
Confidence 4445567899999999999999999999999999999999864 57999999999999999999987653 444
Q ss_pred cccceeeccccc
Q 005357 123 VGPIQVRYADGE 134 (700)
Q Consensus 123 ~~~l~V~~a~~~ 134 (700)
+.|+|.+++.+
T Consensus 87 -r~i~V~~S~~k 97 (100)
T 3r27_A 87 -HPAFVNYSTSQ 97 (100)
T ss_dssp -EEEEEEECSCS
T ss_pred -cEEEEEecccc
Confidence 56888888654
No 238
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.33 E-value=2.8e-16 Score=142.50 Aligned_cols=85 Identities=24% Similarity=0.352 Sum_probs=77.7
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeE--------EEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceecc
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVED--------VYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMR 210 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~--------v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~ 210 (700)
...++|||+||++++++++|+++|++||.|++ |+|+.++ ++.++|||||+|++.++|.+|++.||+..+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~-- 82 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF-- 82 (116)
Confidence 45679999999999999999999999999998 8888884 688999999999999999999999999888
Q ss_pred CCccceEEEecCCCCCC
Q 005357 211 GCDQPLTVRFADPKRPR 227 (700)
Q Consensus 211 g~gr~L~V~~a~~k~~r 227 (700)
+++.|+|++++++..+
T Consensus 83 -~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 83 -SGNPIKVSFATRRADF 98 (116)
Confidence 7999999999887544
No 239
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.56 E-value=8.9e-15 Score=129.03 Aligned_cols=77 Identities=31% Similarity=0.623 Sum_probs=66.7
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
....++|||+||+.++++++|+++|+.||.|++|++++ ++|||||+|++.++|++|++.|++..+ .| +.|+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~-~g--~~l~ 94 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPF-QG--RNLR 94 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEE-TT--EECC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeE-CC--eEEE
Confidence 34568999999999999999999999999999999973 568999999999999999999988655 33 5588
Q ss_pred eecccc
Q 005357 128 VRYADG 133 (700)
Q Consensus 128 V~~a~~ 133 (700)
|++++.
T Consensus 95 V~~a~~ 100 (101)
T 2la4_A 95 TGWGKE 100 (101)
T ss_dssp CCBCCC
T ss_pred EEeccC
Confidence 888754
No 240
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7.8e-15 Score=132.41 Aligned_cols=85 Identities=21% Similarity=0.477 Sum_probs=74.4
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCcee----EEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCcc
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE----DVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQ 214 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~----~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr 214 (700)
...+++|||+||++++++++|+++|+.||.|+ .+++. ++.++|||||+|++.++|.+|++.||+..+ +++
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~---~g~ 95 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKL---YGK 95 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBC---SSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEe---CCc
Confidence 34568999999999999999999999999984 44443 678899999999999999999999999888 799
Q ss_pred ceEEEecCCCCCCCC
Q 005357 215 PLTVRFADPKRPRPG 229 (700)
Q Consensus 215 ~L~V~~a~~k~~r~~ 229 (700)
.|+|+|++++..+..
T Consensus 96 ~l~v~~a~~~~~~~~ 110 (115)
T 2cpx_A 96 ILVIEFGKNKKQRSS 110 (115)
T ss_dssp BCEEEECCCCSCCCC
T ss_pred EEEEEEccCCCCCCC
Confidence 999999998765543
No 241
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.55 E-value=2.6e-15 Score=124.96 Aligned_cols=74 Identities=28% Similarity=0.543 Sum_probs=65.3
Q ss_pred eEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceeec
Q 005357 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRY 130 (700)
Q Consensus 53 tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~~ 130 (700)
+|||+|||.++++++|+++|+.||+|.+|++++++.+++++|||||+|++.++|++|++. ++ ..+.|+. |+|++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~-~~~~g~~--l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KY-HNVGLSK--CEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SS-CCBTTBC--CCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CC-CeECCEE--EEEEE
Confidence 699999999999999999999999999999999999999999999999999999999985 45 4455544 55544
No 242
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=8.8e-15 Score=135.57 Aligned_cols=83 Identities=14% Similarity=0.377 Sum_probs=70.5
Q ss_pred CCCCceEEEeCCCCCCcHHHHH----HHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcc
Q 005357 48 GSSFAKLFVGSVPKTAREEDIR----PLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGV 123 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~----elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~ 123 (700)
..++++|||+||++++++++|+ ++|+.||.|++|.+.+ ++++||||||+|++.++|++||+.||+..+ .|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l-~g-- 99 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPF-QG-- 99 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCC-TT--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEe-CC--
Confidence 4557899999999999999876 6999999999998753 578999999999999999999999988655 34
Q ss_pred ccceeeccccccc
Q 005357 124 GPIQVRYADGERE 136 (700)
Q Consensus 124 ~~l~V~~a~~~~~ 136 (700)
+.|+|.+++.+..
T Consensus 100 r~l~V~~a~~~~~ 112 (127)
T 2a3j_A 100 NPLVITFSETPQS 112 (127)
T ss_dssp SCCEEEECCCCCH
T ss_pred CEEEEEEccCcch
Confidence 4688998876543
No 243
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.55 E-value=3.4e-15 Score=129.99 Aligned_cols=80 Identities=16% Similarity=0.151 Sum_probs=72.6
Q ss_pred ccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEE
Q 005357 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219 (700)
Q Consensus 141 ~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~ 219 (700)
..++|||+||+++++++||+++|++||.|++++++.++ ++.++|||||+|++.++|.+|++.||+..+ +++.|+|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~---~gr~l~v~ 90 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI---GSRKVKLS 90 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeE---CCcEEEEE
Confidence 45799999999999999999999999999988777764 678999999999999999999999999988 79999999
Q ss_pred ecCC
Q 005357 220 FADP 223 (700)
Q Consensus 220 ~a~~ 223 (700)
++..
T Consensus 91 ~a~s 94 (95)
T 2ek1_A 91 GPSS 94 (95)
T ss_dssp CCC-
T ss_pred eccC
Confidence 9864
No 244
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.1e-14 Score=125.70 Aligned_cols=79 Identities=27% Similarity=0.450 Sum_probs=72.0
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
....++|||+||++++++++|+++|++||.|++|+|+++ ||||+|++.++|.+|++.||+..+ +++.|+|
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~-------~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v 75 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD-------YAFVHMEKEADAKAAIAQLNGKEV---KGKRINV 75 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS-------CEEEEESCHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC-------EEEEEECCHHHHHHHHHHhCCCEE---CCcEEEE
Confidence 345689999999999999999999999999999999744 999999999999999999999988 7999999
Q ss_pred EecCCCCCC
Q 005357 219 RFADPKRPR 227 (700)
Q Consensus 219 ~~a~~k~~r 227 (700)
++++++..+
T Consensus 76 ~~a~~~~~~ 84 (90)
T 2dnp_A 76 ELSTKGQKK 84 (90)
T ss_dssp EESCCCCCC
T ss_pred EECCCCCCC
Confidence 999887543
No 245
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.55 E-value=5.9e-15 Score=128.86 Aligned_cols=82 Identities=16% Similarity=0.235 Sum_probs=73.4
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
....++|||+||++++++++|+++|+.||.|+.+ +.++.++|||||+|++.++|.+|++.|++..+ +|+.|+|
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v 85 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI---DGRSVSL 85 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEE---TTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---CCeEEEE
Confidence 3456899999999999999999999999988766 45678899999999999999999999999888 7999999
Q ss_pred EecCCCCCC
Q 005357 219 RFADPKRPR 227 (700)
Q Consensus 219 ~~a~~k~~r 227 (700)
++++++..+
T Consensus 86 ~~a~~~~~~ 94 (96)
T 1fjc_A 86 YYTGEKGGT 94 (96)
T ss_dssp EECSSSCCC
T ss_pred EEcCCCCCC
Confidence 999887544
No 246
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.55 E-value=5.4e-15 Score=127.37 Aligned_cols=73 Identities=18% Similarity=0.188 Sum_probs=69.0
Q ss_pred cceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEec
Q 005357 142 EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221 (700)
Q Consensus 142 s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a 221 (700)
+..|||+||++.+||++|+++|.+||+|++++|.. +||||||+|.+.++|++|++.||+..+ +++.|+|++|
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l---~gr~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVL---ANTTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEE---TTEEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEE---CCcEEEEEEC
Confidence 56899999999999999999999999999999875 599999999999999999999999988 7999999999
Q ss_pred C
Q 005357 222 D 222 (700)
Q Consensus 222 ~ 222 (700)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 5
No 247
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=5.6e-15 Score=128.34 Aligned_cols=80 Identities=24% Similarity=0.456 Sum_probs=70.5
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCc-eeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcC-ceeccCCccceE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGR-VEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNG-IYTMRGCDQPLT 217 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~-V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng-~~~~~g~gr~L~ 217 (700)
...++|||+||++++++++|+++|++||. |+.+.+. ++|||||+|++.++|.+|++.||+ ..+ +++.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~---~g~~l~ 76 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVEL---HGKIME 76 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEE---TTEECE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeE---CCEEEE
Confidence 34679999999999999999999999999 6666653 478999999999999999999999 777 789999
Q ss_pred EEecCCCCCCC
Q 005357 218 VRFADPKRPRP 228 (700)
Q Consensus 218 V~~a~~k~~r~ 228 (700)
|+|++++..+.
T Consensus 77 v~~a~~~~~~~ 87 (93)
T 2cqh_A 77 VDYSVSKKLRS 87 (93)
T ss_dssp EEECCCCCCCC
T ss_pred EEEccCccccC
Confidence 99999875543
No 248
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.55 E-value=7.2e-15 Score=126.61 Aligned_cols=73 Identities=25% Similarity=0.306 Sum_probs=63.5
Q ss_pred CCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceee
Q 005357 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVR 129 (700)
Q Consensus 50 ~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~ 129 (700)
.+.-|||+||++.+||++|+++|.+||+|++|++.. +||||||+|.+.++|++|++.||+..+ .+ +.|+|+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l-~g--r~I~V~ 76 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVL-AN--TTIFAE 76 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEE-TT--EEEEEE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEE-CC--cEEEEE
Confidence 356799999999999999999999999999999965 579999999999999999999988555 33 447776
Q ss_pred cc
Q 005357 130 YA 131 (700)
Q Consensus 130 ~a 131 (700)
++
T Consensus 77 ~A 78 (89)
T 2wbr_A 77 SP 78 (89)
T ss_dssp CC
T ss_pred EC
Confidence 55
No 249
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.55 E-value=1.4e-14 Score=124.17 Aligned_cols=79 Identities=22% Similarity=0.358 Sum_probs=71.6
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
....++|||+||++++++++|+++|++||.|++|+|+++. ++.++|||||+|++.++|.+|++ +++..+ +|+.|+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~---~g~~i~ 83 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRL---DGRVID 83 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEE---TTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEE---CCEEEE
Confidence 3456799999999999999999999999999999999986 58999999999999999999996 577776 789999
Q ss_pred EEec
Q 005357 218 VRFA 221 (700)
Q Consensus 218 V~~a 221 (700)
|++|
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9985
No 250
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.54 E-value=1.2e-14 Score=130.56 Aligned_cols=79 Identities=29% Similarity=0.549 Sum_probs=72.2
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
....++|||+||++++++++|+++|++||.|++|+|+ +|||||+|++.++|.+|++.|||..+ +|+.|+|
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l~V 97 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSF---ANQPLEV 97 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEE---CCeEEEE
Confidence 4557899999999999999999999999999999997 68999999999999999999999988 7999999
Q ss_pred EecCCCCCC
Q 005357 219 RFADPKRPR 227 (700)
Q Consensus 219 ~~a~~k~~r 227 (700)
+|++++..+
T Consensus 98 ~~a~~~~~r 106 (108)
T 2jvo_A 98 VYSKLPAKR 106 (108)
T ss_dssp ESCSCCC--
T ss_pred EEecCCCCC
Confidence 999987554
No 251
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.54 E-value=1.7e-15 Score=133.73 Aligned_cols=84 Identities=18% Similarity=0.308 Sum_probs=74.1
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeC-CCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d-~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
...++|||+||++++++++|+++|+.||.|+. .++.+ .++.++|||||+|++.++|.+|++ ||+..+ +++.|+|
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~---~g~~l~V 89 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV---FGNEIKL 89 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCB---TTBCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEE---CCcEEEE
Confidence 45679999999999999999999999999888 44444 468899999999999999999998 999988 7999999
Q ss_pred EecCCCCCCC
Q 005357 219 RFADPKRPRP 228 (700)
Q Consensus 219 ~~a~~k~~r~ 228 (700)
++++++..++
T Consensus 90 ~~a~~~~~~~ 99 (101)
T 1fj7_A 90 EKPKGRDGTR 99 (101)
T ss_dssp ECCSCCCCSS
T ss_pred EEcCCCCCCC
Confidence 9999876543
No 252
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.1e-15 Score=127.61 Aligned_cols=80 Identities=20% Similarity=0.346 Sum_probs=72.5
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
...++|||+||++++++++|+++|++||.|++|+|+.++ ++.++|||||+|++.++|.+|++.|||..+ +++.|+|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~~~~ 79 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGV---QAQMAKQ 79 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTC---CEESCCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeE---eeEEEee
Confidence 346799999999999999999999999999999999885 688999999999999999999999999887 6888877
Q ss_pred EecC
Q 005357 219 RFAD 222 (700)
Q Consensus 219 ~~a~ 222 (700)
++++
T Consensus 80 ~~~~ 83 (85)
T 1x4e_A 80 SGPS 83 (85)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 6654
No 253
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.54 E-value=5.1e-15 Score=123.27 Aligned_cols=74 Identities=28% Similarity=0.514 Sum_probs=69.7
Q ss_pred eeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEec
Q 005357 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221 (700)
Q Consensus 144 ~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a 221 (700)
+|||+||++++++++|+++|++||.|++|+|+.++ ++.++|||||+|++.++|.+|++ +++..+ +|+.|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~---~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEI---NNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCS---SSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEE---CCEEEEEEeC
Confidence 58999999999999999999999999999999887 68999999999999999999998 999888 7999999985
No 254
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.8e-14 Score=125.45 Aligned_cols=78 Identities=32% Similarity=0.450 Sum_probs=71.1
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCC--CceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccce
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPY--GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPL 216 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~f--G~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L 216 (700)
....++|||+||++++++++|+++|++| |.|++|++. +|||||+|++.++|.+|++.||+..+ +++.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l 81 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVL---DGSPI 81 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEE---TTEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEe---CCcEE
Confidence 3456899999999999999999999999 899999875 56999999999999999999999988 79999
Q ss_pred EEEecCCCCC
Q 005357 217 TVRFADPKRP 226 (700)
Q Consensus 217 ~V~~a~~k~~ 226 (700)
+|+|++++..
T Consensus 82 ~v~~a~~~~~ 91 (99)
T 2cpd_A 82 EVTLAKPVDK 91 (99)
T ss_dssp EEECCCCCCC
T ss_pred EEEECCCCCC
Confidence 9999988754
No 255
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.7e-14 Score=129.30 Aligned_cols=81 Identities=16% Similarity=0.428 Sum_probs=70.5
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
....++|||+||+.++++++|+++|+.||.|++|+|+++ +|||||+|++.++|++||+.|++..+ .| +.|+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l~ 92 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTI-EG--HVVK 92 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEE-TT--EECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEE-CC--cEEE
Confidence 456789999999999999999999999999999999886 57999999999999999999988654 44 5688
Q ss_pred eecccccccc
Q 005357 128 VRYADGERER 137 (700)
Q Consensus 128 V~~a~~~~~~ 137 (700)
|++++.....
T Consensus 93 v~~a~~~~~~ 102 (109)
T 1x4g_A 93 CYWGKESPDM 102 (109)
T ss_dssp EECCCCCCSS
T ss_pred EEecCCCCCC
Confidence 8888765543
No 256
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.54 E-value=8.6e-15 Score=130.56 Aligned_cols=82 Identities=17% Similarity=0.351 Sum_probs=74.8
Q ss_pred cccceeeccCCCccc------cHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCc
Q 005357 140 AVEYKLFVGSLNKQA------TEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCD 213 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~------teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~g 213 (700)
..+++|||+||++.+ ++++|+++|++||.|++|+|+ ..+|.++|||||+|++.++|.+|++.|||..+ +|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~---~g 88 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL---DK 88 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEEC---ST
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCccc---CC
Confidence 346799999999999 789999999999999999988 56789999999999999999999999999888 78
Q ss_pred c-ceEEEecCCCC
Q 005357 214 Q-PLTVRFADPKR 225 (700)
Q Consensus 214 r-~L~V~~a~~k~ 225 (700)
+ .|+|++++...
T Consensus 89 ~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 89 QHTFRVNLFTDFD 101 (105)
T ss_dssp TCEEEEECSCCCC
T ss_pred CceEEEEEcchHh
Confidence 8 99999998653
No 257
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.1e-14 Score=127.65 Aligned_cols=78 Identities=19% Similarity=0.427 Sum_probs=70.5
Q ss_pred cccceeeccCCCc-cccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 140 AVEYKLFVGSLNK-QATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 140 ~~s~~LfV~nLp~-~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
..+++|||+||++ ++++++|+++|++||.|++|+|. +|||||+|++.++|.+|++.||+..+ +++.|+|
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~V 77 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMN---FGKKLIL 77 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSC---BTTTBCE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCee---CCcEEEE
Confidence 4578999999998 99999999999999999999984 68999999999999999999999988 6899999
Q ss_pred EecCCCCCC
Q 005357 219 RFADPKRPR 227 (700)
Q Consensus 219 ~~a~~k~~r 227 (700)
++++.+...
T Consensus 78 ~~a~~~~~~ 86 (96)
T 2kvi_A 78 EVSSSNARP 86 (96)
T ss_dssp EEEECCCC-
T ss_pred EEcCcCCCC
Confidence 999876543
No 258
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.54 E-value=1.1e-14 Score=132.28 Aligned_cols=78 Identities=19% Similarity=0.350 Sum_probs=66.8
Q ss_pred ccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccc-----
Q 005357 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQP----- 215 (700)
Q Consensus 141 ~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~----- 215 (700)
..++|||+||+++++++||+++|++||+|++|.|+.+ |||||+|++.++|.+||+.||+..+ +++.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~---~gr~~~~~~ 85 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKF---RSHEGETAY 85 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBC---CCTTSCCCB
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEE---CCcEeeeEE
Confidence 4679999999999999999999999999999999865 8999999999999999999999988 6777
Q ss_pred eEEEecCCCCCC
Q 005357 216 LTVRFADPKRPR 227 (700)
Q Consensus 216 L~V~~a~~k~~r 227 (700)
|+|+.+.++...
T Consensus 86 i~v~~~~~~~~~ 97 (115)
T 3beg_B 86 IRVKVDGPRSPS 97 (115)
T ss_dssp CEEEECC----C
T ss_pred EEeccCCCCCCC
Confidence 788887765443
No 259
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.54 E-value=7.7e-15 Score=129.45 Aligned_cols=76 Identities=22% Similarity=0.405 Sum_probs=70.8
Q ss_pred ccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEe
Q 005357 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220 (700)
Q Consensus 141 ~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~ 220 (700)
..++|||+||+.++++++|+++|++||.|++|+|.+ ++|||||+|++.++|.+|++.||+..+ +|+.|+|+|
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l~V~~ 97 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFPF---QGRNLRTGW 97 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEE---TTEECCCCB
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCeE---CCeEEEEEe
Confidence 457999999999999999999999999999999983 589999999999999999999999988 799999999
Q ss_pred cCCC
Q 005357 221 ADPK 224 (700)
Q Consensus 221 a~~k 224 (700)
++++
T Consensus 98 a~~~ 101 (101)
T 2la4_A 98 GKER 101 (101)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 9874
No 260
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=8.7e-15 Score=132.57 Aligned_cols=81 Identities=16% Similarity=0.323 Sum_probs=71.1
Q ss_pred CcccceeeccCCCcc-ccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCc--eeccCCccc
Q 005357 139 GAVEYKLFVGSLNKQ-ATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGI--YTMRGCDQP 215 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~-~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~--~~~~g~gr~ 215 (700)
...+++|||+||+++ ++++||+++|+.||.|++|+|++ +||||||+|++.++|.+|++.|++. .+ +|+.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l---~Gr~ 93 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----MKSQAFIEMETREDAMAMVDHCLKKALWF---QGRC 93 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHHHSCCCS---SSSC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhccCCceE---CCEE
Confidence 345789999999998 99999999999999999999975 3899999999999999999998754 34 7899
Q ss_pred eEEEecCCCCCC
Q 005357 216 LTVRFADPKRPR 227 (700)
Q Consensus 216 L~V~~a~~k~~r 227 (700)
|+|.|++.+...
T Consensus 94 l~V~~a~~~~~~ 105 (112)
T 1x4f_A 94 VKVDLSEKYKKL 105 (112)
T ss_dssp CEEEEECSCSSS
T ss_pred EEEEECcccccc
Confidence 999999876543
No 261
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.54 E-value=3.1e-15 Score=140.80 Aligned_cols=81 Identities=20% Similarity=0.244 Sum_probs=67.4
Q ss_pred CCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccc
Q 005357 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPI 126 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l 126 (700)
.....++|||+|||+++||+||+++|+.|| |++|+|++|+. |+++|||||+|++.++|++|| .+++ ..+.++ .|
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g-~~l~gR--~i 115 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDR-ANMQHR--YI 115 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCS-CSSSSC--CC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCC-CEECCE--EE
Confidence 345678999999999999999999999999 77999999986 999999999999999999999 6766 555554 46
Q ss_pred eeecccc
Q 005357 127 QVRYADG 133 (700)
Q Consensus 127 ~V~~a~~ 133 (700)
+|..+..
T Consensus 116 ~V~~a~~ 122 (139)
T 2hgn_A 116 ELFLNST 122 (139)
T ss_dssp CCEECCC
T ss_pred EEEECCC
Confidence 6665543
No 262
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.30 E-value=5.5e-16 Score=140.58 Aligned_cols=86 Identities=22% Similarity=0.409 Sum_probs=75.8
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeE--------EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccC
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIE--------VALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTL 119 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~--------i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~ 119 (700)
..+.++|||+|||.++++++|+++|+.||.|.+ |+|+.|+.+++++|||||+|++.++|++||+.|++..+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~- 82 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF- 82 (116)
Confidence 456789999999999999999999999999999 99999999999999999999999999999999988554
Q ss_pred CCccccceeeccccccc
Q 005357 120 PGGVGPIQVRYADGERE 136 (700)
Q Consensus 120 ~g~~~~l~V~~a~~~~~ 136 (700)
.| +.|+|++++.+..
T Consensus 83 ~g--~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 83 SG--NPIKVSFATRRAD 97 (116)
Confidence 34 4588888765543
No 263
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=4.1e-14 Score=124.41 Aligned_cols=84 Identities=30% Similarity=0.381 Sum_probs=70.3
Q ss_pred CCCCCCCCCCceEEEeCCCCCCcHHHHHHHHhcc--CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccC
Q 005357 42 SPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEH--GNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTL 119 (700)
Q Consensus 42 ~~~~~~~~~~~tLfVgnLP~~vteedL~elF~~~--G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~ 119 (700)
..+.......++|||+|||.++|+++|+++|+.| |.|.+|++. +|||||+|++.++|++||+.|++..+
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~- 76 (99)
T 2cpd_A 6 SGDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVL- 76 (99)
T ss_dssp CCCCSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEE-
T ss_pred cccccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEe-
Confidence 3444455678999999999999999999999999 999999874 46999999999999999999988655
Q ss_pred CCccccceeeccccccc
Q 005357 120 PGGVGPIQVRYADGERE 136 (700)
Q Consensus 120 ~g~~~~l~V~~a~~~~~ 136 (700)
.+ +.|+|++++....
T Consensus 77 ~g--~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 77 DG--SPIEVTLAKPVDK 91 (99)
T ss_dssp TT--EEEEEECCCCCCC
T ss_pred CC--cEEEEEECCCCCC
Confidence 33 5688888876543
No 264
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.53 E-value=7.7e-15 Score=133.90 Aligned_cols=82 Identities=15% Similarity=0.126 Sum_probs=75.9
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCc---eeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccce
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGR---VEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPL 216 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~---V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L 216 (700)
...++|||+||+++++++||+++|+.||. |+.|+|++++.++++|||||+|++.++|.+||+ +|+..+ +++.|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~---~gr~i 90 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESM---GHRYI 90 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEE---TTEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeE---CCeEE
Confidence 34678999999999999999999999999 899999999889999999999999999999999 999887 79999
Q ss_pred EEEecCCCC
Q 005357 217 TVRFADPKR 225 (700)
Q Consensus 217 ~V~~a~~k~ 225 (700)
+|.++..++
T Consensus 91 ~V~~a~~~~ 99 (118)
T 2db1_A 91 EVFKSHRTE 99 (118)
T ss_dssp EEEEECHHH
T ss_pred EEEECCHHH
Confidence 999997653
No 265
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.53 E-value=7e-15 Score=133.07 Aligned_cols=79 Identities=14% Similarity=0.224 Sum_probs=71.0
Q ss_pred ccceeeccCCCccccHHHHHHHhcCCC-ceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEE
Q 005357 141 VEYKLFVGSLNKQATEKEVEEIFSPYG-RVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219 (700)
Q Consensus 141 ~s~~LfV~nLp~~~teedL~~~F~~fG-~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~ 219 (700)
..++|||+||+++++++||+++|++|| +|+.++|..+ .++|||||+|++.++|++||+.|||..+ +|+.|+|+
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l---~Gr~i~V~ 100 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEF---RGSVITVE 100 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEE---TTEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEE---CCeEEEEE
Confidence 457999999999999999999999999 8999988643 4789999999999999999999999988 89999999
Q ss_pred ecCCCC
Q 005357 220 FADPKR 225 (700)
Q Consensus 220 ~a~~k~ 225 (700)
+++...
T Consensus 101 ~a~~~p 106 (111)
T 2jvr_A 101 RDDNPP 106 (111)
T ss_dssp ESCC--
T ss_pred ECCCCC
Confidence 997653
No 266
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.53 E-value=8.3e-15 Score=135.52 Aligned_cols=80 Identities=21% Similarity=0.365 Sum_probs=67.7
Q ss_pred CCCCCceEEEeCCCCCCcHHHHHHHHhccCCee--EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccc
Q 005357 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVI--EVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVG 124 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~--~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~ 124 (700)
+....++|||+|||+++||+||+++|+.| .|+ +|+|++|+. |+++|||||+|++.++|++||+. ++ ..+.++
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~-~~l~gR-- 111 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HK-ERIGHR-- 111 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TT-CCBTTB--
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CC-CEECCE--
Confidence 34567899999999999999999999999 677 999999987 99999999999999999999985 45 555554
Q ss_pred cceeeccc
Q 005357 125 PIQVRYAD 132 (700)
Q Consensus 125 ~l~V~~a~ 132 (700)
.|+|..+.
T Consensus 112 ~I~V~~a~ 119 (126)
T 2hgm_A 112 YIEVFKSS 119 (126)
T ss_dssp CCCCEEEC
T ss_pred EEEEEECC
Confidence 46666554
No 267
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=2.1e-15 Score=139.05 Aligned_cols=79 Identities=22% Similarity=0.328 Sum_probs=66.6
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCe----eEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcc
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNV----IEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGV 123 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V----~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~ 123 (700)
..+.++|||+|||+++|++||+++|+.||.| .+|+|+.|+ +|+++|||||+|++.++|++||+. ++ ..+.++
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~-~~l~gR- 95 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HK-DLLGKR- 95 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TT-EESSSC-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CC-CeeCCe-
Confidence 3457899999999999999999999999975 689999984 899999999999999999999986 55 555554
Q ss_pred ccceeecc
Q 005357 124 GPIQVRYA 131 (700)
Q Consensus 124 ~~l~V~~a 131 (700)
.|+|..+
T Consensus 96 -~i~V~~a 102 (123)
T 2dha_A 96 -YIELFRS 102 (123)
T ss_dssp -EECCEEE
T ss_pred -EEEEEEC
Confidence 3555444
No 268
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.53 E-value=1.9e-14 Score=129.21 Aligned_cols=80 Identities=25% Similarity=0.497 Sum_probs=68.4
Q ss_pred CCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccc
Q 005357 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGP 125 (700)
Q Consensus 46 ~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~ 125 (700)
......++|||+||+.++|+++|+++|+.||.|++|+++ +|||||+|++.++|++|++.|++..+ .| +.
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~-~g--~~ 94 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSF-AN--QP 94 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEE-TT--EE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEE-CC--eE
Confidence 345678999999999999999999999999999999997 58999999999999999999988665 33 56
Q ss_pred ceeeccccccc
Q 005357 126 IQVRYADGERE 136 (700)
Q Consensus 126 l~V~~a~~~~~ 136 (700)
|+|++++....
T Consensus 95 l~V~~a~~~~~ 105 (108)
T 2jvo_A 95 LEVVYSKLPAK 105 (108)
T ss_dssp CEEESCSCCC-
T ss_pred EEEEEecCCCC
Confidence 88888876543
No 269
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.6e-14 Score=130.28 Aligned_cols=80 Identities=23% Similarity=0.348 Sum_probs=73.8
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~ 219 (700)
...++|||+||+++++++||+++|+.| .|++|+|++++.|+++|||||+|++.++|.+|| .+|+..+ ++|.|+|.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~---~gr~i~V~ 88 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLM---IQRYVEVS 88 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEE---TTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeE---CCeEEEEE
Confidence 345799999999999999999999999 899999999988999999999999999999999 6999887 78999999
Q ss_pred ecCCC
Q 005357 220 FADPK 224 (700)
Q Consensus 220 ~a~~k 224 (700)
.+..+
T Consensus 89 ~a~~~ 93 (109)
T 2dnn_A 89 PATER 93 (109)
T ss_dssp ECCHH
T ss_pred ECCcc
Confidence 88764
No 270
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3e-14 Score=123.09 Aligned_cols=79 Identities=29% Similarity=0.543 Sum_probs=68.3
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
....++|||+|||.++|+++|+++|+.||.|++|+++++ ||||+|++.++|++||+.|++..+ .+ +.|+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l~ 74 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEV-KG--KRIN 74 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEE-TT--EECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEE-CC--cEEE
Confidence 456789999999999999999999999999999999743 999999999999999999988555 33 5688
Q ss_pred eecccccccc
Q 005357 128 VRYADGERER 137 (700)
Q Consensus 128 V~~a~~~~~~ 137 (700)
|++++.....
T Consensus 75 v~~a~~~~~~ 84 (90)
T 2dnp_A 75 VELSTKGQKK 84 (90)
T ss_dssp EEESCCCCCC
T ss_pred EEECCCCCCC
Confidence 8888765443
No 271
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.8e-14 Score=126.39 Aligned_cols=80 Identities=23% Similarity=0.400 Sum_probs=71.8
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~ 219 (700)
...++|||+||++++++++|+++|+.||.|+ ++|+.+ .++|||||+|++.++|.+|++.||+..+ +++.|+|+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~V~ 89 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRL---GTDTLRVA 89 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCS---SSSCCEEE
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEE---CCcEEEEE
Confidence 4467999999999999999999999999997 666654 5789999999999999999999999988 79999999
Q ss_pred ecCCCCC
Q 005357 220 FADPKRP 226 (700)
Q Consensus 220 ~a~~k~~ 226 (700)
+++++..
T Consensus 90 ~a~~~~~ 96 (97)
T 2e5j_A 90 LARQQRD 96 (97)
T ss_dssp ECCCCCC
T ss_pred EcCCCCC
Confidence 9988753
No 272
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.52 E-value=8.7e-15 Score=127.90 Aligned_cols=83 Identities=12% Similarity=0.442 Sum_probs=71.6
Q ss_pred CCCCceEEEeCCCCCCcHHHHH----HHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcc
Q 005357 48 GSSFAKLFVGSVPKTAREEDIR----PLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGV 123 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~----elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~ 123 (700)
..++++|||+|||.++++++|+ ++|+.||.|.+|++++ ++.++|||||+|.+.++|++|++.|++..+ .|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g-- 78 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPF-YD-- 78 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEE-TT--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEE-CC--
Confidence 4567999999999999999999 9999999999999874 578899999999999999999999988665 33
Q ss_pred ccceeeccccccc
Q 005357 124 GPIQVRYADGERE 136 (700)
Q Consensus 124 ~~l~V~~a~~~~~ 136 (700)
+.|+|++++.+..
T Consensus 79 ~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 79 KPMRIQYAKTDSD 91 (97)
T ss_dssp EECEEEECSSCCT
T ss_pred cEEEEEEccCCCc
Confidence 5688888876543
No 273
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3.3e-14 Score=121.10 Aligned_cols=76 Identities=25% Similarity=0.532 Sum_probs=65.6
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh-cccccCCCccccc
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL-HNQHTLPGGVGPI 126 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L-~g~~~~~g~~~~l 126 (700)
....++|||+|||.++++++|+++|+.||.|++|+++++ +|||||+|++.++|++|++.| ++ ..+.| +.|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~-~~~~g--~~l 79 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNK-LIVNG--RRL 79 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTT-CEETT--EEC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCC-eeECC--CEE
Confidence 456789999999999999999999999999999999874 579999999999999999998 55 44544 457
Q ss_pred eeeccc
Q 005357 127 QVRYAD 132 (700)
Q Consensus 127 ~V~~a~ 132 (700)
+|++++
T Consensus 80 ~v~~ak 85 (85)
T 2ytc_A 80 NVKWGR 85 (85)
T ss_dssp CEEECC
T ss_pred EEEecC
Confidence 777763
No 274
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2.1e-14 Score=122.31 Aligned_cols=76 Identities=21% Similarity=0.473 Sum_probs=69.8
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHh-cCceeccCCccceE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINAL-NGIYTMRGCDQPLT 217 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~L-ng~~~~~g~gr~L~ 217 (700)
....++|||+||+.++++++|+++|++||.|++|+|+++ +|||||+|++.++|.+|++.| ++..+ +|+.|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~---~g~~l~ 80 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIV---NGRRLN 80 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEE---TTEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeE---CCCEEE
Confidence 345679999999999999999999999999999999874 799999999999999999999 88877 789999
Q ss_pred EEecC
Q 005357 218 VRFAD 222 (700)
Q Consensus 218 V~~a~ 222 (700)
|+|++
T Consensus 81 v~~ak 85 (85)
T 2ytc_A 81 VKWGR 85 (85)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99975
No 275
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.8e-14 Score=123.57 Aligned_cols=81 Identities=21% Similarity=0.335 Sum_probs=68.2
Q ss_pred CCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccc
Q 005357 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGP 125 (700)
Q Consensus 46 ~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~ 125 (700)
......++|||+|| ++|+++|+++|+.||+|++|+|. +++|||||+|++.++|++||+.|++..+ .+ +.
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~-~g--~~ 78 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQV-ES--VQ 78 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEE-TT--EE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeE-CC--eE
Confidence 33456799999996 99999999999999999999984 4678999999999999999999988655 33 56
Q ss_pred ceeecccccccc
Q 005357 126 IQVRYADGERER 137 (700)
Q Consensus 126 l~V~~a~~~~~~ 137 (700)
|+|++++.+...
T Consensus 79 l~v~~a~~~~~~ 90 (97)
T 1x5p_A 79 LKVNIARKQPML 90 (97)
T ss_dssp EEEECCSSCCCC
T ss_pred EEEEECCCCCCC
Confidence 889888765443
No 276
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=8.1e-15 Score=122.41 Aligned_cols=75 Identities=28% Similarity=0.484 Sum_probs=69.9
Q ss_pred ceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEec
Q 005357 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221 (700)
Q Consensus 143 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a 221 (700)
++|||+||+.++++++|+++|++||.|++|+|++++ ++.++|||||+|++.++|.+|++.++ ..+ +|+.|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~---~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HEL---DSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCC---SSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-Ccc---CCEEEEEEec
Confidence 479999999999999999999999999999999986 58899999999999999999999999 666 7899999986
No 277
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3.7e-14 Score=122.98 Aligned_cols=78 Identities=33% Similarity=0.561 Sum_probs=68.0
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
....++|||+|||.++++++|+++|+.||.|++|+++++ ||||+|++.++|++|++.|++..+ .+ +.|+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l~ 75 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEF-QG--KRMH 75 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEE-TT--EEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCee-CC--cEEE
Confidence 456799999999999999999999999999999999743 999999999999999999988665 33 5688
Q ss_pred eeccccccc
Q 005357 128 VRYADGERE 136 (700)
Q Consensus 128 V~~a~~~~~ 136 (700)
|++++.+..
T Consensus 76 V~~a~~~~~ 84 (92)
T 2dgt_A 76 VQLSTSRLR 84 (92)
T ss_dssp EEESSCCCS
T ss_pred EEEccCCCC
Confidence 888876543
No 278
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.52 E-value=1.3e-14 Score=131.26 Aligned_cols=80 Identities=16% Similarity=0.220 Sum_probs=67.7
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccc
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHG-NVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPI 126 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G-~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l 126 (700)
....++|||+|||++++++||+++|+.|| +|..|+|..+ +++|||||+|++.++|++||+.|++..+ .| +.|
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l-~G--r~i 97 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEF-RG--SVI 97 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEE-TT--EEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEE-CC--eEE
Confidence 34568999999999999999999999999 9999988542 4789999999999999999999988655 34 458
Q ss_pred eeeccccc
Q 005357 127 QVRYADGE 134 (700)
Q Consensus 127 ~V~~a~~~ 134 (700)
+|++++..
T Consensus 98 ~V~~a~~~ 105 (111)
T 2jvr_A 98 TVERDDNP 105 (111)
T ss_dssp EEEESCC-
T ss_pred EEEECCCC
Confidence 88877643
No 279
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=3.5e-14 Score=123.90 Aligned_cols=79 Identities=20% Similarity=0.299 Sum_probs=67.7
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEE-EEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEV-ALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i-~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
...++|||+|||+++++++|+++|+.||.|++| .|+.++.++. |||+|.+.++|++||+.|++..+ .| +.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~-~g--~~l~ 85 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQL-EN--FTLK 85 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBC-SS--CBCE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEE-CC--cEEE
Confidence 456899999999999999999999999999999 4888776543 99999999999999999988655 34 5588
Q ss_pred eeccccc
Q 005357 128 VRYADGE 134 (700)
Q Consensus 128 V~~a~~~ 134 (700)
|+++..+
T Consensus 86 V~~a~~~ 92 (96)
T 2e44_A 86 VAYIPDE 92 (96)
T ss_dssp EEECCCC
T ss_pred EEEcCcc
Confidence 8887654
No 280
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=1.9e-14 Score=133.27 Aligned_cols=82 Identities=15% Similarity=0.340 Sum_probs=73.1
Q ss_pred cccceeeccCCCccccHHHHH----HHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccc
Q 005357 140 AVEYKLFVGSLNKQATEKEVE----EIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQP 215 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~----~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~ 215 (700)
..+++|||+||++++++++|+ ++|++||.|++|.|.+ ++.+||||||+|++.++|.+|++.|||..+ +|+.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~--~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l---~gr~ 101 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL--SDDNSGKAYIVFATQESAQAFVEAFQGYPF---QGNP 101 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC--CCSSCCCEEEEESSHHHHHHHHHHSTTCCC---TTSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc--CCCcCCEEEEEECCHHHHHHHHHHHCCCEe---CCCE
Confidence 346799999999999999876 6999999999988753 577899999999999999999999999988 7899
Q ss_pred eEEEecCCCCC
Q 005357 216 LTVRFADPKRP 226 (700)
Q Consensus 216 L~V~~a~~k~~ 226 (700)
|+|+|++.+..
T Consensus 102 l~V~~a~~~~~ 112 (127)
T 2a3j_A 102 LVITFSETPQS 112 (127)
T ss_dssp CEEEECCCCCH
T ss_pred EEEEEccCcch
Confidence 99999988753
No 281
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.52 E-value=3.3e-15 Score=128.92 Aligned_cols=80 Identities=33% Similarity=0.545 Sum_probs=71.4
Q ss_pred ceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEec
Q 005357 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221 (700)
Q Consensus 143 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a 221 (700)
++|||+||+.++++++|+++|+.||.|++|+|+++. ++.++|||||+|++.+ |.+|++.|||..+ +|+.|+|+++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~---~g~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDF---MGRTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCC---SSSSCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEE---CCeEEEEEEc
Confidence 579999999999999999999999999999999886 4889999999999999 9999999999988 7999999999
Q ss_pred CCCCC
Q 005357 222 DPKRP 226 (700)
Q Consensus 222 ~~k~~ 226 (700)
.++..
T Consensus 78 ~~~~~ 82 (90)
T 2ki2_A 78 NPKKS 82 (90)
T ss_dssp -----
T ss_pred CCCCC
Confidence 87643
No 282
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=6e-14 Score=122.98 Aligned_cols=80 Identities=26% Similarity=0.363 Sum_probs=71.3
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
....++|||+|| ++++++|+++|++||.|++|+|. .++|||||+|++.++|.+|++.||+..+ +++.|+|
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~---~g~~l~v 81 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQV---ESVQLKV 81 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEE---TTEEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeE---CCeEEEE
Confidence 345679999996 89999999999999999999984 4689999999999999999999999988 7999999
Q ss_pred EecCCCCCCC
Q 005357 219 RFADPKRPRP 228 (700)
Q Consensus 219 ~~a~~k~~r~ 228 (700)
+|++++..+.
T Consensus 82 ~~a~~~~~~~ 91 (97)
T 1x5p_A 82 NIARKQPMLD 91 (97)
T ss_dssp ECCSSCCCCC
T ss_pred EECCCCCCCC
Confidence 9998875543
No 283
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.52 E-value=7.6e-15 Score=124.38 Aligned_cols=73 Identities=19% Similarity=0.397 Sum_probs=66.8
Q ss_pred cceeeccCCCccc------cHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCcc-
Q 005357 142 EYKLFVGSLNKQA------TEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQ- 214 (700)
Q Consensus 142 s~~LfV~nLp~~~------teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr- 214 (700)
+++|||+|||.++ ++++|+++|++||.|++|+|. ++++.++|||||+|++.++|.+|++.|||..+ +|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~---~g~~ 76 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL---DKQH 76 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCC---SSSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCccc---CCce
Confidence 3689999999999 789999999999999999988 56789999999999999999999999999988 677
Q ss_pred ceEE
Q 005357 215 PLTV 218 (700)
Q Consensus 215 ~L~V 218 (700)
.|+|
T Consensus 77 ~l~V 80 (81)
T 2krb_A 77 TFRV 80 (81)
T ss_dssp CCCC
T ss_pred eEEe
Confidence 7776
No 284
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.51 E-value=4.1e-14 Score=126.95 Aligned_cols=78 Identities=18% Similarity=0.445 Sum_probs=67.1
Q ss_pred CCCCceEEEeCCCCC-CcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccc
Q 005357 48 GSSFAKLFVGSVPKT-AREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPI 126 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~-vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l 126 (700)
....++|||+||+.+ ++++||+++|+.||.|++|+| ++|||||+|++.++|++||+.|++..+ .| +.|
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~~l 92 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVL-AG--QTL 92 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEE-TT--EEC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEE-CC--eEE
Confidence 345689999999999 999999999999999999998 468999999999999999999988655 34 558
Q ss_pred eeeccccccc
Q 005357 127 QVRYADGERE 136 (700)
Q Consensus 127 ~V~~a~~~~~ 136 (700)
+|++++..+.
T Consensus 93 ~V~~a~~~~~ 102 (110)
T 1wf1_A 93 DINMAGEPKP 102 (110)
T ss_dssp CEEESCCCCS
T ss_pred EEEECCCCCC
Confidence 8888875443
No 285
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.51 E-value=4.4e-14 Score=135.33 Aligned_cols=84 Identities=33% Similarity=0.680 Sum_probs=76.9
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
....++|||+|||.++|+++|+++|+.||.|++|++++++ +|+++|||||+|++.++|++|++.||+..++.|..+.|+
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence 3467899999999999999999999999999999999986 599999999999999999999999999888777678899
Q ss_pred eeccc
Q 005357 128 VRYAD 132 (700)
Q Consensus 128 V~~a~ 132 (700)
|++++
T Consensus 171 V~~ad 175 (175)
T 3nmr_A 171 VKFAD 175 (175)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 98874
No 286
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.51 E-value=3.6e-14 Score=124.28 Aligned_cols=78 Identities=17% Similarity=0.393 Sum_probs=65.2
Q ss_pred CCCCCceEEEeCCCC-CCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccc
Q 005357 47 DGSSFAKLFVGSVPK-TAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGP 125 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~-~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~ 125 (700)
+..+.++|||+|||. ++++++|+++|+.||.|++|+|. +|||||+|++.++|++||+.|++..+ .| +.
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~~ 74 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMN-FG--KK 74 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSC-BT--TT
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCee-CC--cE
Confidence 356789999999998 99999999999999999999984 57999999999999999999988655 34 45
Q ss_pred ceeecccccc
Q 005357 126 IQVRYADGER 135 (700)
Q Consensus 126 l~V~~a~~~~ 135 (700)
|+|++++...
T Consensus 75 l~V~~a~~~~ 84 (96)
T 2kvi_A 75 LILEVSSSNA 84 (96)
T ss_dssp BCEEEEECCC
T ss_pred EEEEEcCcCC
Confidence 7777775443
No 287
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.51 E-value=4.2e-14 Score=125.33 Aligned_cols=78 Identities=22% Similarity=0.420 Sum_probs=67.2
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccccee
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQV 128 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V 128 (700)
...++|||+|||.++|+++|+++|+.||.|++|+|++ |||||+|++.++|++||+.|++..+ .+ +.|+|
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l~v 77 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDL-EG--ENIEI 77 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEE-TT--EEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCcc-CC--CEEEE
Confidence 4578999999999999999999999999999999873 4999999999999999999988654 44 56888
Q ss_pred ecccccccc
Q 005357 129 RYADGERER 137 (700)
Q Consensus 129 ~~a~~~~~~ 137 (700)
++++.....
T Consensus 78 ~~a~~~~~~ 86 (103)
T 2dgu_A 78 VFAKPPDQK 86 (103)
T ss_dssp EECCCCCCC
T ss_pred EEcCCCccc
Confidence 888655443
No 288
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.51 E-value=4e-14 Score=124.54 Aligned_cols=77 Identities=19% Similarity=0.447 Sum_probs=70.8
Q ss_pred CcccceeeccCCCc-cccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 139 GAVEYKLFVGSLNK-QATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 139 ~~~s~~LfV~nLp~-~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
...+++|||+||++ ++++++|+++|+.||.|++|+|. +|||||+|++.++|.+|++.|||..+ +|+.|+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l~ 88 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMN---FGKKLI 88 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEE---TTEECE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEE---CCEEEE
Confidence 44578999999998 99999999999999999999983 78999999999999999999999988 799999
Q ss_pred EEecCCCC
Q 005357 218 VRFADPKR 225 (700)
Q Consensus 218 V~~a~~k~ 225 (700)
|++++.+.
T Consensus 89 V~~a~~~~ 96 (97)
T 2xnq_A 89 LEVSSSNA 96 (97)
T ss_dssp EEECCCCC
T ss_pred EEecCCCC
Confidence 99998753
No 289
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=5.1e-14 Score=127.49 Aligned_cols=80 Identities=15% Similarity=0.229 Sum_probs=67.9
Q ss_pred CCCCceEEEeCCCCC-CcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhccc-ccCCCcccc
Q 005357 48 GSSFAKLFVGSVPKT-AREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQ-HTLPGGVGP 125 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~-vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~-~~~~g~~~~ 125 (700)
..++++|||+|||++ ++++||+++|+.||.|.+|+|++ +||||||+|++.++|++||+.|++. ..+.| +.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~G--r~ 93 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQG--RC 93 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSS--SC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECC--EE
Confidence 456899999999998 99999999999999999999975 3689999999999999999998753 33444 55
Q ss_pred ceeecccccc
Q 005357 126 IQVRYADGER 135 (700)
Q Consensus 126 l~V~~a~~~~ 135 (700)
|+|.++..+.
T Consensus 94 l~V~~a~~~~ 103 (112)
T 1x4f_A 94 VKVDLSEKYK 103 (112)
T ss_dssp CEEEEECSCS
T ss_pred EEEEECcccc
Confidence 8888886543
No 290
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.51 E-value=1.5e-14 Score=126.34 Aligned_cols=81 Identities=14% Similarity=0.367 Sum_probs=68.6
Q ss_pred CCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccc
Q 005357 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPI 126 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l 126 (700)
.....++|||+|||.++++++|+++|+.||.|..| ..+++++|||||+|++.++|++||+.|++..+ .| +.|
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l 83 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI-DG--RSV 83 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEE-TT--EEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEE-CC--eEE
Confidence 34568999999999999999999999999988766 34688999999999999999999999988554 44 458
Q ss_pred eeecccccc
Q 005357 127 QVRYADGER 135 (700)
Q Consensus 127 ~V~~a~~~~ 135 (700)
+|+++....
T Consensus 84 ~v~~a~~~~ 92 (96)
T 1fjc_A 84 SLYYTGEKG 92 (96)
T ss_dssp EEEECSSSC
T ss_pred EEEEcCCCC
Confidence 888876544
No 291
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.1e-14 Score=131.73 Aligned_cols=65 Identities=23% Similarity=0.408 Sum_probs=60.6
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCC---CCcccEEEEEeCCHHHHHHHHHHhc
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKT---GQQQGCCFIKYATSEEADRAIRALH 114 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~T---g~skG~aFVeF~~~edA~~Ai~~L~ 114 (700)
...++|||+|||+++|+++|+++|++||+|+ +.++.++.+ |+++|||||+|++.++|++||+.|+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~ 73 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL 73 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh
Confidence 4568999999999999999999999999999 888888877 7999999999999999999999883
No 292
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.51 E-value=4.4e-14 Score=135.97 Aligned_cols=81 Identities=19% Similarity=0.231 Sum_probs=72.1
Q ss_pred cceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEec
Q 005357 142 EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221 (700)
Q Consensus 142 s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a 221 (700)
..+|||+||++++++++|+++|++||+|++|+|+.++ ++|||||+|++.++|++|++.|||..++. +++.|+|+|+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g-~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYN-ACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSS-SCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecC-CCcEEEEEEe
Confidence 4679999999999999999999999999999997653 57899999999999999999999998842 2499999999
Q ss_pred CCCCC
Q 005357 222 DPKRP 226 (700)
Q Consensus 222 ~~k~~ 226 (700)
+++..
T Consensus 122 k~~~l 126 (164)
T 1sjr_A 122 KLTSL 126 (164)
T ss_dssp SSSSC
T ss_pred cCCcc
Confidence 98753
No 293
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.51 E-value=8.1e-15 Score=129.52 Aligned_cols=79 Identities=24% Similarity=0.434 Sum_probs=67.9
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
....++|||+|||.++++++|+++|+.||.|++|+|++|+ +|+++|||||+|++.++|++||+ ++ ..+.| +.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~-~~~~g--~~l~ 79 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQ-INFHG--KKLK 79 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CC-CEETT--EECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CC-CeECC--EEEE
Confidence 3457899999999999999999999999999999999998 89999999999999999999998 44 33444 3466
Q ss_pred eeccc
Q 005357 128 VRYAD 132 (700)
Q Consensus 128 V~~a~ 132 (700)
|.++.
T Consensus 80 v~~a~ 84 (102)
T 2xs2_A 80 LGPAI 84 (102)
T ss_dssp EEEEE
T ss_pred EEECC
Confidence 66554
No 294
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.51 E-value=5.1e-14 Score=135.51 Aligned_cols=83 Identities=14% Similarity=0.263 Sum_probs=70.8
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
.....+|||+||++++|+++|+++|++||+|++|+|+.+ +++|||||+|++.++|++|++.|++..+.. ..+.|+
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g-~g~~L~ 117 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYN-ACCTLR 117 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSS-SCSCEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecC-CCcEEE
Confidence 345678999999999999999999999999999999754 257899999999999999999999876654 336689
Q ss_pred eecccccc
Q 005357 128 VRYADGER 135 (700)
Q Consensus 128 V~~a~~~~ 135 (700)
|+|++.+.
T Consensus 118 V~~Ak~~~ 125 (164)
T 1sjr_A 118 IDFSKLTS 125 (164)
T ss_dssp EEECSSSS
T ss_pred EEEecCCc
Confidence 99987653
No 295
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=2.7e-14 Score=128.81 Aligned_cols=76 Identities=20% Similarity=0.193 Sum_probs=70.5
Q ss_pred ccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEe
Q 005357 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220 (700)
Q Consensus 141 ~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~ 220 (700)
..++|||+||++++++++|+++|++||.|++|+|.+ ++|||||+|++.++|.+|++.|||..+ +++.|+|+|
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l~V~~ 80 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKF---HHVPLYLEW 80 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBS---SSSBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEE---CCeEEEEEE
Confidence 467999999999999999999999999999998874 478999999999999999999999988 799999999
Q ss_pred cCCC
Q 005357 221 ADPK 224 (700)
Q Consensus 221 a~~k 224 (700)
+...
T Consensus 81 a~~~ 84 (111)
T 1whx_A 81 APIG 84 (111)
T ss_dssp EETT
T ss_pred CCCC
Confidence 9764
No 296
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.51 E-value=2.6e-14 Score=133.07 Aligned_cols=80 Identities=26% Similarity=0.475 Sum_probs=73.7
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
....++|||+||+.++++++|+++|++||.|++|+|++++ ++.++|||||+|++.++|.+|++.||+..+ +++.|+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~ 136 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL---FGRTIR 136 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEE---TTEEEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEE---CCEEEE
Confidence 3456899999999999999999999999999999999885 688999999999999999999999999888 799999
Q ss_pred EEec
Q 005357 218 VRFA 221 (700)
Q Consensus 218 V~~a 221 (700)
|+||
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9986
No 297
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.51 E-value=1.7e-14 Score=126.07 Aligned_cols=82 Identities=23% Similarity=0.502 Sum_probs=74.6
Q ss_pred cccceeeccCCCccccHHHHH----HHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccc
Q 005357 140 AVEYKLFVGSLNKQATEKEVE----EIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQP 215 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~----~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~ 215 (700)
..+++|||+||++++++++|+ ++|++||.|++|+|.+ ++.++|||||+|++.++|.+|++.|||..+ +|+.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~ 80 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPF---YDKP 80 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEE---TTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEE---CCcE
Confidence 356799999999999999999 9999999999998873 467889999999999999999999999988 7899
Q ss_pred eEEEecCCCCC
Q 005357 216 LTVRFADPKRP 226 (700)
Q Consensus 216 L~V~~a~~k~~ 226 (700)
|+|+|++++..
T Consensus 81 l~v~~a~~~~~ 91 (97)
T 1nu4_A 81 MRIQYAKTDSD 91 (97)
T ss_dssp CEEEECSSCCT
T ss_pred EEEEEccCCCc
Confidence 99999988653
No 298
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.51 E-value=5.4e-14 Score=123.68 Aligned_cols=77 Identities=17% Similarity=0.398 Sum_probs=66.0
Q ss_pred CCCCCceEEEeCCCC-CCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccc
Q 005357 47 DGSSFAKLFVGSVPK-TAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGP 125 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~-~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~ 125 (700)
...+.++|||+||+. ++++++|+++|+.||.|.+|++. +|||||+|++.++|++|++.|++..+ .| +.
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~-~g--~~ 86 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMN-FG--KK 86 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEE-TT--EE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEE-CC--EE
Confidence 345689999999998 99999999999999999999983 68999999999999999999988655 34 45
Q ss_pred ceeeccccc
Q 005357 126 IQVRYADGE 134 (700)
Q Consensus 126 l~V~~a~~~ 134 (700)
|+|++++..
T Consensus 87 l~V~~a~~~ 95 (97)
T 2xnq_A 87 LILEVSSSN 95 (97)
T ss_dssp CEEEECCCC
T ss_pred EEEEecCCC
Confidence 888877643
No 299
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.50 E-value=6.8e-15 Score=131.68 Aligned_cols=82 Identities=12% Similarity=0.137 Sum_probs=75.6
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCc---eeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccce
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGR---VEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPL 216 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~---V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L 216 (700)
...++|||+||+++++++||+++|+.||. |+.|+|++++.+.++|||||+|++.++|.+|++ +|+..+ +++.|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~---~gr~i 84 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYM---GQRYV 84 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCS---SSSCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCccee---CCeEE
Confidence 45679999999999999999999999988 899999999889999999999999999999999 999877 78999
Q ss_pred EEEecCCCC
Q 005357 217 TVRFADPKR 225 (700)
Q Consensus 217 ~V~~a~~k~ 225 (700)
+|.++.++.
T Consensus 85 ~V~~a~~~~ 93 (107)
T 2lmi_A 85 EVYEINNED 93 (107)
T ss_dssp CCEECCHHH
T ss_pred EEEECCHHH
Confidence 999998653
No 300
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.50 E-value=2.1e-13 Score=125.75 Aligned_cols=80 Identities=16% Similarity=0.269 Sum_probs=67.2
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccE-EEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGC-CFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~-aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
.....|||+||++.+|+++|+++|++||.|++|+|+.+ +|| |||+|++.++|++|++.|++..+. ++.+.|+
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~-g~~~~l~ 95 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIY-AGCCTLK 95 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCB-TTBSEEE
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEec-CCCeEEE
Confidence 34456789999999999999999999999999999752 276 999999999999999999986664 3445689
Q ss_pred eecccccc
Q 005357 128 VRYADGER 135 (700)
Q Consensus 128 V~~a~~~~ 135 (700)
|.+++...
T Consensus 96 V~~Ak~~~ 103 (124)
T 2e5i_A 96 IEYARPTR 103 (124)
T ss_dssp EECCSCSC
T ss_pred EEEecCCc
Confidence 99887543
No 301
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.50 E-value=6.4e-14 Score=132.70 Aligned_cols=81 Identities=20% Similarity=0.394 Sum_probs=70.7
Q ss_pred CCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccc
Q 005357 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGP 125 (700)
Q Consensus 46 ~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~ 125 (700)
......++|||+|||+++|+++|+++|+.||.|++|+|+++ ++|||||+|.+.++|++||+.|++..+ .| +.
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~ 139 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTL-CG--CR 139 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCS-SS--SC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEE-CC--eE
Confidence 34566899999999999999999999999999999999886 578999999999999999999988654 44 56
Q ss_pred ceeeccccc
Q 005357 126 IQVRYADGE 134 (700)
Q Consensus 126 l~V~~a~~~ 134 (700)
|+|++++.+
T Consensus 140 l~v~~a~~~ 148 (150)
T 2i2y_A 140 VRVELSNGE 148 (150)
T ss_dssp CEEEECCCC
T ss_pred EEEEEcCCC
Confidence 888887654
No 302
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.49 E-value=6.3e-14 Score=126.52 Aligned_cols=81 Identities=25% Similarity=0.436 Sum_probs=74.1
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~ 219 (700)
..+++|||+||++++++++|+++|+.||.|++|.|+++ +.++|||||+|.+.++|.+|++.|||..+ +|+.|+|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~v~ 80 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNV---SNRYLVVL 80 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBS---SSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEE---CCeEEEEE
Confidence 34679999999999999999999999999999999865 45699999999999999999999999988 79999999
Q ss_pred ecCCCC
Q 005357 220 FADPKR 225 (700)
Q Consensus 220 ~a~~k~ 225 (700)
|++++.
T Consensus 81 ~a~~~~ 86 (115)
T 3lqv_A 81 YYNANR 86 (115)
T ss_dssp ECCHHH
T ss_pred EecCCh
Confidence 998754
No 303
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.49 E-value=1.1e-13 Score=131.20 Aligned_cols=83 Identities=20% Similarity=0.460 Sum_probs=75.0
Q ss_pred CCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccc
Q 005357 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPI 126 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l 126 (700)
.....++|||+|||.++|+++|+++|+.||.|.+|+++.++.+|.++|||||+|++.++|++|++.|++..+ . .+.|
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~--g~~i 159 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL-N--GRPL 159 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE-T--TEEC
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc-C--CcEE
Confidence 345678999999999999999999999999999999999999999999999999999999999999988665 3 3568
Q ss_pred eeeccc
Q 005357 127 QVRYAD 132 (700)
Q Consensus 127 ~V~~a~ 132 (700)
+|++++
T Consensus 160 ~v~~a~ 165 (166)
T 3md3_A 160 RINWAA 165 (166)
T ss_dssp EEEESC
T ss_pred EEEecC
Confidence 888875
No 304
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=3.6e-14 Score=123.23 Aligned_cols=80 Identities=28% Similarity=0.509 Sum_probs=65.8
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCC-eeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGN-VIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~-V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
...++|||+|||.++|+++|+++|+.||. |..+.+. ++|||||+|++.++|++||+.|++...+.| +.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g--~~l~ 76 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHG--KIME 76 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETT--EECE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECC--EEEE
Confidence 45789999999999999999999999999 6666552 468999999999999999999988334444 5688
Q ss_pred eecccccccc
Q 005357 128 VRYADGERER 137 (700)
Q Consensus 128 V~~a~~~~~~ 137 (700)
|++++.+..+
T Consensus 77 v~~a~~~~~~ 86 (93)
T 2cqh_A 77 VDYSVSKKLR 86 (93)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCcccc
Confidence 8888765443
No 305
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.9e-14 Score=132.08 Aligned_cols=82 Identities=22% Similarity=0.321 Sum_probs=73.4
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeE-EEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVED-VYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~-v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
...++|||+||+++++++||+++|+.||.|++ +.|..+.++.++|||||+|++.++|.+||+ ||+..+ +++.|+|
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~---~gr~i~V 98 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYM---GNRFIQV 98 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCS---TTSCBEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeE---CCcEEEE
Confidence 44579999999999999999999999999988 455555688999999999999999999999 999887 7999999
Q ss_pred EecCCCC
Q 005357 219 RFADPKR 225 (700)
Q Consensus 219 ~~a~~k~ 225 (700)
.++..+.
T Consensus 99 ~~a~~~~ 105 (124)
T 1wel_A 99 HPITKKG 105 (124)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9998653
No 306
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=2.1e-14 Score=129.58 Aligned_cols=76 Identities=18% Similarity=0.244 Sum_probs=66.3
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccccee
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQV 128 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V 128 (700)
...++|||+|||+++++++|+++|+.||.|++|+|++ ++|||||+|.+.++|++||+.||+..+ .+ +.|+|
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~-~g--~~l~V 78 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKF-HH--VPLYL 78 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBS-SS--SBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEE-CC--eEEEE
Confidence 3568999999999999999999999999999999864 457999999999999999999988665 33 55888
Q ss_pred ecccc
Q 005357 129 RYADG 133 (700)
Q Consensus 129 ~~a~~ 133 (700)
.|+..
T Consensus 79 ~~a~~ 83 (111)
T 1whx_A 79 EWAPI 83 (111)
T ss_dssp EEEET
T ss_pred EECCC
Confidence 88754
No 307
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=7e-14 Score=121.83 Aligned_cols=79 Identities=18% Similarity=0.216 Sum_probs=68.4
Q ss_pred ccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEe
Q 005357 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220 (700)
Q Consensus 141 ~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~ 220 (700)
..++|||+||++++++++|+++|+.||.|++| +....++. ||||+|++.++|.+|++ ||+..+ +|+.|+|++
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~---~g~~l~V~~ 78 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSL---GGHRLRVRP 78 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEE---TTEECCCBC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEE---CCEEEEEEE
Confidence 45699999999999999999999999999987 33333443 99999999999999999 999988 799999999
Q ss_pred cCCCCCC
Q 005357 221 ADPKRPR 227 (700)
Q Consensus 221 a~~k~~r 227 (700)
+..+...
T Consensus 79 a~~~~~~ 85 (94)
T 2e5g_A 79 REQKEFQ 85 (94)
T ss_dssp SCCSCCC
T ss_pred CCcCCCC
Confidence 8776543
No 308
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.48 E-value=1.1e-13 Score=131.24 Aligned_cols=82 Identities=33% Similarity=0.612 Sum_probs=74.7
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccccee
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQV 128 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V 128 (700)
...++|||+|||.++++++|+++|+.||.|.+|+++.++.+|+++|||||+|.+.++|++|++.|++. .+.|+.+.|+|
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~~~i~v 164 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITV 164 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-CCTTCSSCCEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC-ccCCCccceEE
Confidence 45688999999999999999999999999999999999989999999999999999999999999885 55666677888
Q ss_pred ecc
Q 005357 129 RYA 131 (700)
Q Consensus 129 ~~a 131 (700)
+|+
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 309
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.48 E-value=1.5e-13 Score=130.88 Aligned_cols=83 Identities=33% Similarity=0.647 Sum_probs=75.1
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
....++|||+|||.++++++|+++|+.||.|++|++++++.+++++|||||+|++.++|++|++.|++. .+.|+.+.|+
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~~~l~ 164 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNV-IPEGGSQPLS 164 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-CCTTCSSCCE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCC-EecCCCeEEE
Confidence 345789999999999999999999999999999999999989999999999999999999999999885 4556667888
Q ss_pred eecc
Q 005357 128 VRYA 131 (700)
Q Consensus 128 V~~a 131 (700)
|+++
T Consensus 165 V~~A 168 (168)
T 1b7f_A 165 VRLA 168 (168)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8774
No 310
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.48 E-value=1.2e-13 Score=137.15 Aligned_cols=84 Identities=25% Similarity=0.494 Sum_probs=75.5
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccccee
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQV 128 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V 128 (700)
...++|||+||+.++|++||+++|+.||.|++|+|++++.+|+++|||||+|++.++|++|++.|++..+ .| +.|+|
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~-~g--~~i~V 199 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDL-GG--QYLRV 199 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBC-SS--SBCEE
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEe-CC--cEEEE
Confidence 4568999999999999999999999999999999999999999999999999999999999999988654 44 55888
Q ss_pred ecccccc
Q 005357 129 RYADGER 135 (700)
Q Consensus 129 ~~a~~~~ 135 (700)
+++....
T Consensus 200 ~~a~~~~ 206 (216)
T 2qfj_A 200 GKAVTPP 206 (216)
T ss_dssp EECSSCS
T ss_pred EEecCCC
Confidence 8887653
No 311
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.48 E-value=4.6e-14 Score=138.04 Aligned_cols=82 Identities=21% Similarity=0.406 Sum_probs=77.2
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~ 219 (700)
...++|||+||++++++++|+++|+.||.|++|.|+.+.++.++|||||+|++.++|.+|++.||+..+ +++.|+|+
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l---~Gr~l~V~ 162 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPL---DGRPMDIQ 162 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBC---SSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEE---CCEEEEEE
Confidence 446799999999999999999999999999999999998889999999999999999999999999987 78999999
Q ss_pred ecCCC
Q 005357 220 FADPK 224 (700)
Q Consensus 220 ~a~~k 224 (700)
|+...
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 99865
No 312
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.5e-14 Score=133.27 Aligned_cols=81 Identities=15% Similarity=0.139 Sum_probs=72.9
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCce----eEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccc
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRV----EDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQP 215 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V----~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~ 215 (700)
...++|||+||+++++++||+++|+.||.| ++|+|+++++++++|||||+|++.++|.+||+. |+..+ ++|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l---~gR~ 96 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLL---GKRY 96 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEES---SSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCee---CCeE
Confidence 346799999999999999999999999875 689999998899999999999999999999996 88766 7899
Q ss_pred eEEEecCCC
Q 005357 216 LTVRFADPK 224 (700)
Q Consensus 216 L~V~~a~~k 224 (700)
|+|..+..+
T Consensus 97 i~V~~a~~~ 105 (123)
T 2dha_A 97 IELFRSTAA 105 (123)
T ss_dssp ECCEEECHH
T ss_pred EEEEECCHH
Confidence 999988765
No 313
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.3e-13 Score=120.08 Aligned_cols=77 Identities=18% Similarity=0.353 Sum_probs=64.4
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccccee
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQV 128 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V 128 (700)
...++|||+|||.++|+++|+++|+.||.|.+| +.++.+++ ||||+|++.++|++||+ |++..+ .| +.|+|
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~-~g--~~l~V 76 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSL-GG--HRLRV 76 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEE-TT--EECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEE-CC--EEEEE
Confidence 456899999999999999999999999999987 66666665 99999999999999999 987554 44 45777
Q ss_pred eccccc
Q 005357 129 RYADGE 134 (700)
Q Consensus 129 ~~a~~~ 134 (700)
+++..+
T Consensus 77 ~~a~~~ 82 (94)
T 2e5g_A 77 RPREQK 82 (94)
T ss_dssp BCSCCS
T ss_pred EECCcC
Confidence 766543
No 314
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=4.9e-14 Score=127.88 Aligned_cols=80 Identities=20% Similarity=0.331 Sum_probs=67.1
Q ss_pred CCCCceEEE--eCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhccccc--CCCcc
Q 005357 48 GSSFAKLFV--GSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHT--LPGGV 123 (700)
Q Consensus 48 ~~~~~tLfV--gnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~--~~g~~ 123 (700)
..++++||| |||++++|+++|+++|++||+|.+|.|+.+ ||||||+|++.++|++|++.||+..+ ..+..
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 346789999 779999999999999999999999988643 68999999999999999999999765 23345
Q ss_pred ccceeecccc
Q 005357 124 GPIQVRYADG 133 (700)
Q Consensus 124 ~~l~V~~a~~ 133 (700)
+.|.|.+++.
T Consensus 96 ~~l~v~~a~~ 105 (114)
T 2cq2_A 96 ITLYLNFVEK 105 (114)
T ss_dssp EECEEEEESC
T ss_pred cEEEEEeccc
Confidence 6777777653
No 315
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.47 E-value=9.8e-14 Score=128.76 Aligned_cols=80 Identities=19% Similarity=0.249 Sum_probs=71.0
Q ss_pred cceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccce-EEEEeCCHHHHHHHHHHhcCceeccCCccceEEEe
Q 005357 142 EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGC-GFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220 (700)
Q Consensus 142 s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~-aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~ 220 (700)
-.+|||+||++.+|+++|+++|++||.|++|+|+.+ .+|| |||+|++.++|.+|++.|||..++. +.+.|+|+|
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g-~~~~LrI~~ 102 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYN-ACCTLRIDF 102 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEET-TEEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecC-CCcEEEEEe
Confidence 357899999999999999999999999999998865 3677 9999999999999999999999853 248999999
Q ss_pred cCCCCC
Q 005357 221 ADPKRP 226 (700)
Q Consensus 221 a~~k~~ 226 (700)
+++++-
T Consensus 103 ak~~~l 108 (130)
T 3zzy_A 103 SKLTSL 108 (130)
T ss_dssp CSCSSC
T ss_pred cCCCce
Confidence 998753
No 316
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=7.3e-14 Score=126.77 Aligned_cols=82 Identities=18% Similarity=0.301 Sum_probs=71.1
Q ss_pred Ccccceeec--cCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCcee--ccCCcc
Q 005357 139 GAVEYKLFV--GSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYT--MRGCDQ 214 (700)
Q Consensus 139 ~~~s~~LfV--~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~--~~g~gr 214 (700)
...+++||| +||++++++++|+++|++||.|++|.|+.+ ||||||+|++.++|.+|++.|||+.+ ..+.++
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 345678999 779999999999999999999999988643 79999999999999999999999976 223488
Q ss_pred ceEEEecCCCC
Q 005357 215 PLTVRFADPKR 225 (700)
Q Consensus 215 ~L~V~~a~~k~ 225 (700)
+|.|.|++...
T Consensus 97 ~l~v~~a~~~p 107 (114)
T 2cq2_A 97 TLYLNFVEKVQ 107 (114)
T ss_dssp ECEEEEESCCC
T ss_pred EEEEEecccCc
Confidence 99999998654
No 317
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.47 E-value=7.1e-14 Score=126.80 Aligned_cols=62 Identities=23% Similarity=0.419 Sum_probs=56.7
Q ss_pred CCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhccccc
Q 005357 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHT 118 (700)
Q Consensus 50 ~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~ 118 (700)
..++|||+|||+++|++||+++|+.||+|++|+|+.+ |||||+|++.++|++||+.||+..+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~ 76 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKF 76 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4689999999999999999999999999999999876 7999999999999999999988555
No 318
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.47 E-value=2.8e-14 Score=126.09 Aligned_cols=82 Identities=24% Similarity=0.411 Sum_probs=74.8
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~ 219 (700)
...++|||+||++++++++|+++|+.||.|++|+|++++++.++|||||+|++.++|.+|++ ++..+ +|+.|.|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~---~g~~l~v~ 81 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINF---HGKKLKLG 81 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEE---TTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeE---CCEEEEEE
Confidence 34679999999999999999999999999999999999888999999999999999999999 88777 78999999
Q ss_pred ecCCCCC
Q 005357 220 FADPKRP 226 (700)
Q Consensus 220 ~a~~k~~ 226 (700)
++..+..
T Consensus 82 ~a~~~~~ 88 (102)
T 2xs2_A 82 PAIRKQN 88 (102)
T ss_dssp EEEECC-
T ss_pred ECCcCcc
Confidence 9987643
No 319
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.47 E-value=2e-14 Score=135.02 Aligned_cols=86 Identities=22% Similarity=0.419 Sum_probs=70.0
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEE--E---eecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCc
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVA--L---IKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGG 122 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~--i---~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~ 122 (700)
...+++|||+|||+++|+++|+++|+.||.|.+|. + ++...+++++|||||+|.+.++|++||+.||+..+ .|
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~-~g- 119 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL-FG- 119 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEE-TT-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEe-CC-
Confidence 45679999999999999999999999999987741 1 11124689999999999999999999999988665 33
Q ss_pred cccceeeccccccc
Q 005357 123 VGPIQVRYADGERE 136 (700)
Q Consensus 123 ~~~l~V~~a~~~~~ 136 (700)
+.|+|.+++....
T Consensus 120 -~~l~V~~a~~~~~ 132 (143)
T 3egn_A 120 -KPMVVQFARSARP 132 (143)
T ss_dssp -EECEEEECCCSCC
T ss_pred -cEEEEEECCCCCC
Confidence 5688888865443
No 320
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.46 E-value=6.8e-14 Score=121.21 Aligned_cols=78 Identities=21% Similarity=0.329 Sum_probs=61.0
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
....++|||+|||+++||++|+++|++||.|++|+|+++ +||||||+|++.++|++ +++. .+.++.+.|+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~-~~~~~g~~v~ 77 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGE-DLIIKGISVH 77 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTC-EEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCC-CcccCCEEEE
Confidence 456789999999999999999999999999999999875 78999999999999984 3343 3333456688
Q ss_pred eecccccc
Q 005357 128 VRYADGER 135 (700)
Q Consensus 128 V~~a~~~~ 135 (700)
|.++..+.
T Consensus 78 v~~a~~k~ 85 (89)
T 3d2w_A 78 ISNAEPKH 85 (89)
T ss_dssp EEECC---
T ss_pred EEEcCCCC
Confidence 88876543
No 321
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.46 E-value=8.9e-14 Score=119.73 Aligned_cols=76 Identities=17% Similarity=0.277 Sum_probs=70.0
Q ss_pred ccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEe
Q 005357 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220 (700)
Q Consensus 141 ~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~ 220 (700)
.+++|||+||+++++++||+++|++| .|++|+|. .++|||||+|++.++|.+|++.||+..+ +++.|+|++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~---~g~~l~V~~ 74 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSF---RGKDLIVQL 74 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEE---TTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeE---CCcEEEEEE
Confidence 45789999999999999999999999 99999884 5789999999999999999999999988 799999999
Q ss_pred cCCCC
Q 005357 221 ADPKR 225 (700)
Q Consensus 221 a~~k~ 225 (700)
+..+.
T Consensus 75 a~~~~ 79 (88)
T 1wg1_A 75 QPTDA 79 (88)
T ss_dssp CCCCC
T ss_pred cCCCc
Confidence 97653
No 322
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.46 E-value=3.9e-14 Score=133.13 Aligned_cols=87 Identities=24% Similarity=0.431 Sum_probs=74.3
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEE------EEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCC
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV------YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGC 212 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v------~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~ 212 (700)
...+++|||+||++++++++|+++|+.||.|+.+ .|....++.++|||||+|.+.++|.+|++.|||..+ +
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~---~ 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL---F 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEE---T
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEe---C
Confidence 3456899999999999999999999999998764 232235688999999999999999999999999998 7
Q ss_pred ccceEEEecCCCCCCC
Q 005357 213 DQPLTVRFADPKRPRP 228 (700)
Q Consensus 213 gr~L~V~~a~~k~~r~ 228 (700)
|+.|+|.|++.+..+.
T Consensus 119 g~~l~V~~a~~~~~~~ 134 (143)
T 3egn_A 119 GKPMVVQFARSARPKQ 134 (143)
T ss_dssp TEECEEEECCCSCC--
T ss_pred CcEEEEEECCCCCCcc
Confidence 9999999998865543
No 323
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.46 E-value=8.1e-14 Score=120.01 Aligned_cols=75 Identities=15% Similarity=0.307 Sum_probs=65.5
Q ss_pred CCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceee
Q 005357 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVR 129 (700)
Q Consensus 50 ~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~ 129 (700)
..++|||+|||++++++||+++|++| .|++|+|. +++|||||+|++.++|++|++.|++..+ .| +.|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~-~g--~~l~V~ 73 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSF-RG--KDLIVQ 73 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEE-TT--EEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeE-CC--cEEEEE
Confidence 56899999999999999999999999 99999984 5789999999999999999999988655 33 558888
Q ss_pred ccccc
Q 005357 130 YADGE 134 (700)
Q Consensus 130 ~a~~~ 134 (700)
++..+
T Consensus 74 ~a~~~ 78 (88)
T 1wg1_A 74 LQPTD 78 (88)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 87543
No 324
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.46 E-value=2.4e-14 Score=119.00 Aligned_cols=74 Identities=23% Similarity=0.416 Sum_probs=68.0
Q ss_pred eeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEec
Q 005357 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221 (700)
Q Consensus 144 ~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a 221 (700)
+|||+||+.++++++|+++|++||.|++|.|++++ ++.++|||||+|++.++|.+|++. ++..+ +|+.|+|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~---~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNV---GLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCB---TTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeE---CCEEEEEEEC
Confidence 58999999999999999999999999999998886 588999999999999999999995 77766 7899999875
No 325
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.46 E-value=1.6e-13 Score=131.39 Aligned_cols=80 Identities=26% Similarity=0.484 Sum_probs=72.6
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccccee
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQV 128 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V 128 (700)
...++|||+|||.++|+++|+++|+.||.|.+|++++++.+|+++|||||+|++.++|++|++.|++..+ .| +.|+|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~~l~V 168 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQL-GD--KKLLV 168 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEE-TT--EECEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEE-CC--eEEEE
Confidence 4478999999999999999999999999999999999998999999999999999999999999988655 33 55777
Q ss_pred ecc
Q 005357 129 RYA 131 (700)
Q Consensus 129 ~~a 131 (700)
+++
T Consensus 169 ~~A 171 (172)
T 2g4b_A 169 QRA 171 (172)
T ss_dssp EEC
T ss_pred EeC
Confidence 775
No 326
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.46 E-value=1.9e-13 Score=126.87 Aligned_cols=81 Identities=14% Similarity=0.286 Sum_probs=69.9
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccE-EEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGC-CFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~-aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
..-.+|||+||++.+|+++|+++|++||.|.+|+|+.+ .+|| |||+|++.++|++|++.|++..+.+ +.+.|+
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g-~~~~Lr 99 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYN-ACCTLR 99 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEET-TEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecC-CCcEEE
Confidence 44567889999999999999999999999999998764 2577 9999999999999999999977755 346789
Q ss_pred eecccccc
Q 005357 128 VRYADGER 135 (700)
Q Consensus 128 V~~a~~~~ 135 (700)
|.+++.+.
T Consensus 100 I~~ak~~~ 107 (130)
T 3zzy_A 100 IDFSKLTS 107 (130)
T ss_dssp EEECSCSS
T ss_pred EEecCCCc
Confidence 99987654
No 327
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=5.9e-14 Score=120.65 Aligned_cols=79 Identities=28% Similarity=0.395 Sum_probs=66.9
Q ss_pred ccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEe
Q 005357 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220 (700)
Q Consensus 141 ~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~ 220 (700)
.+++|||+||++++++++|+++|++||.|++|+|+++ ++|||||+|++.++|++| ++..+ .++++.|+|++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~----~~~~~-~~~g~~l~v~~ 74 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSL----CGEDL-IIKGISVHISN 74 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHT----TTCEE-EETTEEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHH----hcCCc-eeCCEEEEEEe
Confidence 4679999999999999999999999999999999865 789999999999999753 44433 33689999999
Q ss_pred cCCCCCCC
Q 005357 221 ADPKRPRP 228 (700)
Q Consensus 221 a~~k~~r~ 228 (700)
++++..+.
T Consensus 75 a~~~~~~~ 82 (88)
T 1wf0_A 75 AEPKHNSN 82 (88)
T ss_dssp CCCCCCCC
T ss_pred cCCCCCCC
Confidence 98875543
No 328
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.45 E-value=1.1e-13 Score=119.75 Aligned_cols=78 Identities=27% Similarity=0.427 Sum_probs=64.2
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~ 219 (700)
...++|||+||++++++++|+++|++||.|++|+|+++ +||||||+|++.++|.+ +++..+ .++++.|+|+
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~-~~~g~~v~v~ 79 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDL-IIKGISVHIS 79 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEE-EETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCc-ccCCEEEEEE
Confidence 45679999999999999999999999999999999875 79999999999999883 566644 3468999999
Q ss_pred ecCCCCC
Q 005357 220 FADPKRP 226 (700)
Q Consensus 220 ~a~~k~~ 226 (700)
++.++..
T Consensus 80 ~a~~k~~ 86 (89)
T 3d2w_A 80 NAEPKHN 86 (89)
T ss_dssp ECC----
T ss_pred EcCCCCc
Confidence 9988754
No 329
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.45 E-value=2e-13 Score=133.64 Aligned_cols=85 Identities=26% Similarity=0.441 Sum_probs=76.3
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
....++|||+|||.++++++|+++|+.||.|.+|++++++.+|.++|||||+|++.++|++|++.|++..+ .| +.|+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l~ 187 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQL-GD--KKLL 187 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEE-TT--EECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE-CC--EEEE
Confidence 46779999999999999999999999999999999999998999999999999999999999999988665 33 5688
Q ss_pred eecccccc
Q 005357 128 VRYADGER 135 (700)
Q Consensus 128 V~~a~~~~ 135 (700)
|++++...
T Consensus 188 v~~a~~~~ 195 (198)
T 2yh0_A 188 VQRASVGA 195 (198)
T ss_dssp EEESCCCC
T ss_pred EEECCCCC
Confidence 88876543
No 330
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.44 E-value=8.3e-14 Score=127.90 Aligned_cols=80 Identities=18% Similarity=0.252 Sum_probs=66.1
Q ss_pred ceEEEeCC----CCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCC----HHH----HHHHHH--Hhcccc
Q 005357 52 AKLFVGSV----PKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYAT----SEE----ADRAIR--ALHNQH 117 (700)
Q Consensus 52 ~tLfVgnL----P~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~----~ed----A~~Ai~--~L~g~~ 117 (700)
.+|||+|| ++++++++|+++|+.||+|.+|+++.|+.||+++|||||+|.| .++ |.+|++ .|++ .
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng-~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSG-C 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTC-E
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcC-C
Confidence 68999999 9999999999999999999999999999999999999999996 433 788888 5666 4
Q ss_pred cCCCccccceeeccccc
Q 005357 118 TLPGGVGPIQVRYADGE 134 (700)
Q Consensus 118 ~~~g~~~~l~V~~a~~~ 134 (700)
.++|+ .|+|...+..
T Consensus 82 ~I~Gr--~irV~ln~~g 96 (136)
T 2j8a_A 82 FIMGF--KFEVILNKHS 96 (136)
T ss_dssp EETTE--EEEEEECCTT
T ss_pred eecCc--EEEEEECccc
Confidence 45554 4677665543
No 331
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.44 E-value=2.3e-13 Score=125.41 Aligned_cols=77 Identities=22% Similarity=0.292 Sum_probs=68.2
Q ss_pred ceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccce-EEEEeCCHHHHHHHHHHhcCceeccCCccceEEEec
Q 005357 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGC-GFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221 (700)
Q Consensus 143 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~-aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a 221 (700)
..|||+||++.+++++|+++|++||.|++|+|+.+ +|| |||+|++.++|.+|++.|||..++. ..+.|+|.|+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g-~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYA-GCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBT-TBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecC-CCeEEEEEEe
Confidence 45789999999999999999999999999999763 386 9999999999999999999998842 2368999999
Q ss_pred CCCC
Q 005357 222 DPKR 225 (700)
Q Consensus 222 ~~k~ 225 (700)
+++.
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 9875
No 332
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.44 E-value=6.7e-14 Score=129.42 Aligned_cols=80 Identities=18% Similarity=0.187 Sum_probs=71.4
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCcee--EEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVE--DVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~--~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
...++|||+||+++++++||+++|+.| .|+ +|+|++|+.|+++|||||+|++.++|.+||+. ++..+ ++|.|+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l---~gR~I~ 114 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERI---GHRYIE 114 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCB---TTBCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEE---CCEEEE
Confidence 346789999999999999999999999 676 89999998899999999999999999999985 66666 789999
Q ss_pred EEecCCC
Q 005357 218 VRFADPK 224 (700)
Q Consensus 218 V~~a~~k 224 (700)
|.++..+
T Consensus 115 V~~a~~~ 121 (126)
T 2hgm_A 115 VFKSSQE 121 (126)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9988654
No 333
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.44 E-value=2.3e-13 Score=124.82 Aligned_cols=82 Identities=22% Similarity=0.381 Sum_probs=66.9
Q ss_pred CCCCCCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCc
Q 005357 43 PDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGG 122 (700)
Q Consensus 43 ~~~~~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~ 122 (700)
.+.......++|||+|| ++|+++|+++|+.||+|++|+|. +++|||||+|++.++|++||+.|++..+ .|
T Consensus 31 ~~~~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~-~g- 100 (121)
T 2bz2_A 31 PERRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQV-ES- 100 (121)
T ss_dssp ----CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBC-SS-
T ss_pred CCCCCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEE-CC-
Confidence 33444567899999996 79999999999999999999985 4678999999999999999999988655 44
Q ss_pred cccceeecccccc
Q 005357 123 VGPIQVRYADGER 135 (700)
Q Consensus 123 ~~~l~V~~a~~~~ 135 (700)
+.|+|.+++...
T Consensus 101 -~~l~V~~a~~~~ 112 (121)
T 2bz2_A 101 -VQLKVNIARKQP 112 (121)
T ss_dssp -CBCEEEECCSSC
T ss_pred -eEEEEEEeCCCC
Confidence 568888887554
No 334
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.44 E-value=2.4e-13 Score=136.12 Aligned_cols=83 Identities=24% Similarity=0.362 Sum_probs=75.7
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
...++|||+||++++++++|+++|++||.|++|+|++|+ ++.++|||||+|.+.++|.+|++.+++..+ +++.|+|
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~---~g~~i~~ 89 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI---KGKPVRI 89 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---TTEECEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhc---CCccccc
Confidence 346799999999999999999999999999999999986 589999999999999999999999999988 7899999
Q ss_pred EecCCCC
Q 005357 219 RFADPKR 225 (700)
Q Consensus 219 ~~a~~k~ 225 (700)
.++....
T Consensus 90 ~~~~~~~ 96 (213)
T 4f02_A 90 MWSQRDP 96 (213)
T ss_dssp EECCCCT
T ss_pred ccccccc
Confidence 9987653
No 335
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.43 E-value=2.2e-13 Score=151.32 Aligned_cols=83 Identities=25% Similarity=0.495 Sum_probs=74.1
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
....++|||+||++++|+++|+++|+.||.|+.|+|+.++.|+.++|||||+|.+.++|++||+.||+..+ .| ..|.
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i-~g--r~i~ 175 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKI-DG--RRVL 175 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEE-CC--EEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999988655 44 4577
Q ss_pred eecccc
Q 005357 128 VRYADG 133 (700)
Q Consensus 128 V~~a~~ 133 (700)
|.++..
T Consensus 176 V~~a~~ 181 (437)
T 3pgw_S 176 VDVERG 181 (437)
T ss_pred EEEeCC
Confidence 777754
No 336
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=2.4e-13 Score=118.59 Aligned_cols=80 Identities=23% Similarity=0.265 Sum_probs=71.0
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEE-EeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVY-LMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~-I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
...++|||+||++++++++|+++|++||.|++|+ |+.+.. .+.|||+|++.++|.+|++.|||..+ +++.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~---~g~~l~V 86 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQL---ENFTLKV 86 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBC---SSCBCEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEE---CCcEEEE
Confidence 3467999999999999999999999999999995 776643 23399999999999999999999988 7999999
Q ss_pred EecCCCC
Q 005357 219 RFADPKR 225 (700)
Q Consensus 219 ~~a~~k~ 225 (700)
++++++.
T Consensus 87 ~~a~~~~ 93 (96)
T 2e44_A 87 AYIPDEM 93 (96)
T ss_dssp EECCCCC
T ss_pred EEcCccc
Confidence 9999874
No 337
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.42 E-value=1.9e-13 Score=130.19 Aligned_cols=80 Identities=26% Similarity=0.531 Sum_probs=71.3
Q ss_pred CCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceee
Q 005357 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVR 129 (700)
Q Consensus 50 ~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~ 129 (700)
..++|||+|||.++|+++|+++|+.||.|++|+++.++.+|+++|||||+|++.++|++|++ +++ ..+.| +.|+|+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~-~~~~g--~~i~V~ 161 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKF-IDFKD--RKIEIK 161 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSE-ECSSS--SCEEEE
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCC-EEeCC--eEEEEe
Confidence 46799999999999999999999999999999999999899999999999999999999998 655 44444 558888
Q ss_pred cccc
Q 005357 130 YADG 133 (700)
Q Consensus 130 ~a~~ 133 (700)
+++.
T Consensus 162 ~a~p 165 (167)
T 2cjk_A 162 RAEP 165 (167)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 8764
No 338
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.42 E-value=3.6e-13 Score=131.66 Aligned_cols=85 Identities=25% Similarity=0.534 Sum_probs=71.0
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccccee
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQV 128 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V 128 (700)
...++|||+|||.++|+++|+++|+.||.|++|+|+.++.+|+++|||||+|++.++|++||+. ++ ..+.| +.|+|
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~-~~~~G--~~i~v 177 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KY-HTVNG--HNCEV 177 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SC-CEETT--EECEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CC-cEECC--EEEEE
Confidence 4568999999999999999999999999999999999999999999999999999999999986 45 45555 45888
Q ss_pred ecccccccc
Q 005357 129 RYADGERER 137 (700)
Q Consensus 129 ~~a~~~~~~ 137 (700)
+++..+...
T Consensus 178 ~~a~~k~~~ 186 (196)
T 1l3k_A 178 RKALSKQEM 186 (196)
T ss_dssp EECC-----
T ss_pred EecCChhHh
Confidence 887655443
No 339
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.41 E-value=3e-13 Score=115.47 Aligned_cols=72 Identities=25% Similarity=0.524 Sum_probs=61.7
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhcc----C-------CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccc
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEH----G-------NVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQH 117 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~----G-------~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~ 117 (700)
...++|||+|||.++++++|+++|+.| | .|.+|++.++ +|||||+|++.++|++|+ .|++..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 457999999999999999999999999 8 9999998765 589999999999999999 898755
Q ss_pred cCCCccccceeec
Q 005357 118 TLPGGVGPIQVRY 130 (700)
Q Consensus 118 ~~~g~~~~l~V~~ 130 (700)
+ .| +.|+|+.
T Consensus 77 ~-~g--~~l~V~r 86 (87)
T 2hzc_A 77 F-QG--QSLKIRR 86 (87)
T ss_dssp E-TT--EECEEEC
T ss_pred E-CC--eEEEEeC
Confidence 4 44 3466653
No 340
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.41 E-value=5.3e-13 Score=132.29 Aligned_cols=80 Identities=18% Similarity=0.243 Sum_probs=73.1
Q ss_pred ccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEe
Q 005357 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220 (700)
Q Consensus 141 ~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~ 220 (700)
..++|||+||++++++++|+++|+.||.|..|+|.++.++.++|||||+|++.++|.+|++.++. .+ +|+.|+|.+
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~-~~---~Gr~l~V~~ 183 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQ-KY---KETDLLILF 183 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTC-EE---TTEECEEEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCC-eE---CCEEEEEEE
Confidence 45789999999999999999999999999999999998899999999999999999999986654 55 789999999
Q ss_pred cCCC
Q 005357 221 ADPK 224 (700)
Q Consensus 221 a~~k 224 (700)
++.-
T Consensus 184 ~~~y 187 (193)
T 2voo_A 184 KDDY 187 (193)
T ss_dssp TTTC
T ss_pred hHHH
Confidence 8764
No 341
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.2e-13 Score=118.66 Aligned_cols=78 Identities=21% Similarity=0.354 Sum_probs=63.4
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccccee
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQV 128 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V 128 (700)
..+++|||+|||.++|+++|+++|+.||.|++|+|+++ ++|||||+|++.++|++|+ +.. +....+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~----~~~-~~~~g~~l~v 72 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLC----GED-LIIKGISVHI 72 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTT----TCE-EEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHh----cCC-ceeCCEEEEE
Confidence 35689999999999999999999999999999999865 6799999999999998653 322 2224466888
Q ss_pred eccccccc
Q 005357 129 RYADGERE 136 (700)
Q Consensus 129 ~~a~~~~~ 136 (700)
.++..+..
T Consensus 73 ~~a~~~~~ 80 (88)
T 1wf0_A 73 SNAEPKHN 80 (88)
T ss_dssp ECCCCCCC
T ss_pred EecCCCCC
Confidence 88766544
No 342
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.40 E-value=7.2e-13 Score=118.58 Aligned_cols=84 Identities=12% Similarity=0.158 Sum_probs=70.6
Q ss_pred CCCCceEEEeCCCC-----CCcHHHHHHHHhccCCeeEEEEeecCCC-CCcccEEEEEeCCHHHHHHHHHHhcccccCCC
Q 005357 48 GSSFAKLFVGSVPK-----TAREEDIRPLFEEHGNVIEVALIKDKKT-GQQQGCCFIKYATSEEADRAIRALHNQHTLPG 121 (700)
Q Consensus 48 ~~~~~tLfVgnLP~-----~vteedL~elF~~~G~V~~i~i~~d~~T-g~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g 121 (700)
...+++|+|.||-. +.+++||+++|++||+|++|+|++++++ ++++|||||+|++.++|++|++.||+..+ .|
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~-~G 83 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF-GG 83 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE-TT
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE-CC
Confidence 35678999999962 3478999999999999999999998765 68999999999999999999999998666 33
Q ss_pred ccccceeeccccc
Q 005357 122 GVGPIQVRYADGE 134 (700)
Q Consensus 122 ~~~~l~V~~a~~~ 134 (700)
+.|+|.+++..
T Consensus 84 --r~i~v~~a~~~ 94 (105)
T 2pe8_A 84 --RVVKACFYNLD 94 (105)
T ss_dssp --EECEEEECCHH
T ss_pred --cEEEEEEcCHH
Confidence 56888887643
No 343
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.40 E-value=9.8e-13 Score=117.71 Aligned_cols=82 Identities=17% Similarity=0.229 Sum_probs=71.7
Q ss_pred cccceeeccCCCc-----cccHHHHHHHhcCCCceeEEEEeeCCC--CCccceEEEEeCCHHHHHHHHHHhcCceeccCC
Q 005357 140 AVEYKLFVGSLNK-----QATEKEVEEIFSPYGRVEDVYLMRDEL--KQSRGCGFVKYSHRDMALAAINALNGIYTMRGC 212 (700)
Q Consensus 140 ~~s~~LfV~nLp~-----~~teedL~~~F~~fG~V~~v~I~~d~~--g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~ 212 (700)
..+++|+|.||-. +.+++||+++|++||.|++|+|+++.. +.++|||||+|++.++|.+|++.|||+.+ +
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~---~ 82 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF---G 82 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE---T
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE---C
Confidence 4567899999863 236899999999999999999998853 57899999999999999999999999998 7
Q ss_pred ccceEEEecCCC
Q 005357 213 DQPLTVRFADPK 224 (700)
Q Consensus 213 gr~L~V~~a~~k 224 (700)
||.|+|.|++..
T Consensus 83 Gr~i~v~~a~~~ 94 (105)
T 2pe8_A 83 GRVVKACFYNLD 94 (105)
T ss_dssp TEECEEEECCHH
T ss_pred CcEEEEEEcCHH
Confidence 999999999763
No 344
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.40 E-value=5.6e-13 Score=122.23 Aligned_cols=78 Identities=27% Similarity=0.382 Sum_probs=69.9
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEE
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~ 219 (700)
...++|||+|| ++++++|+++|+.||.|++|+|. .++|||||+|++.++|.+|++.||+..+ +++.|+|+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~---~g~~l~V~ 106 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQV---ESVQLKVN 106 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBC---SSCBCEEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEE---CCeEEEEE
Confidence 45689999996 69999999999999999999986 4689999999999999999999999987 79999999
Q ss_pred ecCCCCCC
Q 005357 220 FADPKRPR 227 (700)
Q Consensus 220 ~a~~k~~r 227 (700)
|++++...
T Consensus 107 ~a~~~~~~ 114 (121)
T 2bz2_A 107 IARKQPML 114 (121)
T ss_dssp ECCSSCC-
T ss_pred EeCCCCCC
Confidence 99887543
No 345
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.39 E-value=6.3e-13 Score=132.91 Aligned_cols=78 Identities=24% Similarity=0.310 Sum_probs=72.1
Q ss_pred ccceeeccCCC-ccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEE
Q 005357 141 VEYKLFVGSLN-KQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219 (700)
Q Consensus 141 ~s~~LfV~nLp-~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~ 219 (700)
.+++|||+||+ +++++++|+++|+.||.|++|+|+++ .+|||||+|++.++|.+||+.|||..+ .|+.|+|.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~---~g~~l~v~ 75 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFM---FGQKMNVC 75 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEE---TTEECEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEE---CCceEEEE
Confidence 46799999999 89999999999999999999999876 479999999999999999999999998 78999999
Q ss_pred ecCCCC
Q 005357 220 FADPKR 225 (700)
Q Consensus 220 ~a~~k~ 225 (700)
+++.+.
T Consensus 76 ~s~~~~ 81 (205)
T 3tyt_A 76 VSKQPA 81 (205)
T ss_dssp ECSCSC
T ss_pred EccCCc
Confidence 997654
No 346
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=1.2e-12 Score=113.85 Aligned_cols=72 Identities=17% Similarity=0.238 Sum_probs=64.5
Q ss_pred eeeccCCCccccHHH----HHHHhcCCC-ceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEE
Q 005357 144 KLFVGSLNKQATEKE----VEEIFSPYG-RVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218 (700)
Q Consensus 144 ~LfV~nLp~~~teed----L~~~F~~fG-~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V 218 (700)
.|||+||++++++++ |+++|++|| +|.+| + .|+|||+|++.++|.+|++.|+|..+ .||.|+|
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------t---gG~AfV~F~~~esA~~A~~~l~G~~l---~gr~i~v 78 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------T---GCSAILRFINQDSAERAQKRMENEDV---FGNRIIV 78 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------C---TTCEEEEESSHHHHHHHHHHHTTCCS---SSSCCEE
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------e---cCEEEEEECCHHHHHHHHHHhcCCcc---CCceEEE
Confidence 499999999999887 558999995 99998 2 29999999999999999999999998 6999999
Q ss_pred EecCCCCCC
Q 005357 219 RFADPKRPR 227 (700)
Q Consensus 219 ~~a~~k~~r 227 (700)
.|++.+..-
T Consensus 79 ~~A~~~sd~ 87 (96)
T 2diu_A 79 SFTPKNREL 87 (96)
T ss_dssp ESSCCSCCC
T ss_pred EecCCCcce
Confidence 999987644
No 347
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=2.3e-12 Score=112.11 Aligned_cols=74 Identities=23% Similarity=0.463 Sum_probs=62.1
Q ss_pred CceEEEeCCCCCCcHHH----HHHHHhcc-CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccc
Q 005357 51 FAKLFVGSVPKTAREED----IRPLFEEH-GNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGP 125 (700)
Q Consensus 51 ~~tLfVgnLP~~vteed----L~elF~~~-G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~ 125 (700)
.+.|||+||++++++++ |+++|+.| |+|.+| |+ |+|||+|.+.++|++|++.|++..++ .+.
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~---gr~ 75 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVF---GNR 75 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSS---SSC
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccC---Cce
Confidence 34499999999999988 55899999 599998 34 99999999999999999999987764 355
Q ss_pred ceeecccccccc
Q 005357 126 IQVRYADGERER 137 (700)
Q Consensus 126 l~V~~a~~~~~~ 137 (700)
|+|.+++.+...
T Consensus 76 i~v~~A~~~sd~ 87 (96)
T 2diu_A 76 IIVSFTPKNREL 87 (96)
T ss_dssp CEEESSCCSCCC
T ss_pred EEEEecCCCcce
Confidence 899998766544
No 348
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.37 E-value=1.5e-12 Score=132.96 Aligned_cols=83 Identities=22% Similarity=0.383 Sum_probs=71.0
Q ss_pred CcccceeeccCCCccc---------cHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceec
Q 005357 139 GAVEYKLFVGSLNKQA---------TEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTM 209 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~---------teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~ 209 (700)
....++|||+||+.++ ++++|+++|++||.|++|+|+.+ ||||||+|++.++|+.|+++|+|..++
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~-----kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES-----KNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC-----CCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 3456899999999998 79999999999999999999864 899999999999999999999998873
Q ss_pred c---------CCccceEEEecCCCCC
Q 005357 210 R---------GCDQPLTVRFADPKRP 226 (700)
Q Consensus 210 ~---------g~gr~L~V~~a~~k~~ 226 (700)
. ++++.|.|+||+.+..
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC----
T ss_pred ccccccccccCCCCEEEEEEccCCCC
Confidence 1 2579999999987643
No 349
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.37 E-value=4.8e-13 Score=122.88 Aligned_cols=78 Identities=15% Similarity=0.270 Sum_probs=69.4
Q ss_pred ceeeccCC----CccccHHHHHHHhcCCCceeEEEEeeCC-CCCccceEEEEeCC----H-HH---HHHHHH--HhcCce
Q 005357 143 YKLFVGSL----NKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSH----R-DM---ALAAIN--ALNGIY 207 (700)
Q Consensus 143 ~~LfV~nL----p~~~teedL~~~F~~fG~V~~v~I~~d~-~g~srG~aFVeF~~----~-e~---A~~Ai~--~Lng~~ 207 (700)
++|||+|| ++.+++++|+++|+.||+|.+|.++.|. +|.++|||||+|.| . ++ |.+|++ .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999997 68999999999996 3 32 788888 789998
Q ss_pred eccCCccceEEEecCC
Q 005357 208 TMRGCDQPLTVRFADP 223 (700)
Q Consensus 208 ~~~g~gr~L~V~~a~~ 223 (700)
+ +|+.|+|.+.+.
T Consensus 83 I---~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 I---MGFKFEVILNKH 95 (136)
T ss_dssp E---TTEEEEEEECCT
T ss_pred e---cCcEEEEEECcc
Confidence 8 899999999765
No 350
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.2e-12 Score=118.40 Aligned_cols=77 Identities=19% Similarity=0.235 Sum_probs=63.5
Q ss_pred cccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCC----CCccceEEEEeCCHHHHHHHHHHhcCceeccCCccc
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDEL----KQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQP 215 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~----g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~ 215 (700)
...++|||+||++++++++|+++|++||.|+ +.++.+.. |.++|||||+|++.++|.+||+.|++ + +|+.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~---~G~~ 79 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--E---DGKL 79 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--E---TTEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--c---CCcE
Confidence 3467999999999999999999999999999 77776653 68999999999999999999999832 2 3455
Q ss_pred eEEEecC
Q 005357 216 LTVRFAD 222 (700)
Q Consensus 216 L~V~~a~ 222 (700)
|.+..+.
T Consensus 80 ~~~~~~~ 86 (114)
T 2dnl_A 80 YLCVSSP 86 (114)
T ss_dssp EEEECCS
T ss_pred EEeccCC
Confidence 5555443
No 351
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=99.36 E-value=1.6e-13 Score=99.15 Aligned_cols=34 Identities=56% Similarity=0.904 Sum_probs=31.8
Q ss_pred CCCCceeeeCCCCCcccccCCcCcccccCChhhh
Q 005357 557 AKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELT 590 (700)
Q Consensus 557 ~~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~~~ 590 (700)
..+.|+||+++||++||||.+|+||+||||++|+
T Consensus 4 ~~~~W~e~~~~~G~~YYyN~~T~es~We~P~~~k 37 (37)
T 1e0l_A 4 AVSEWTEYKTADGKTYYYNNRTLESTWEKPQELK 37 (37)
T ss_dssp SSCSCEEEECTTSCEEEEETTTTEEESSCCSSCC
T ss_pred CCCCeEEEECCCCCEEEEECCCCCEEecCCCccC
Confidence 4568999999999999999999999999999985
No 352
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.36 E-value=7.4e-13 Score=113.06 Aligned_cols=71 Identities=27% Similarity=0.444 Sum_probs=65.6
Q ss_pred ccceeeccCCCccccHHHHHHHhcCC----C-------ceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceec
Q 005357 141 VEYKLFVGSLNKQATEKEVEEIFSPY----G-------RVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTM 209 (700)
Q Consensus 141 ~s~~LfV~nLp~~~teedL~~~F~~f----G-------~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~ 209 (700)
..++|||+||++++++++|+++|+.| | .|+++++.++ +|||||+|++.++|.+|+ .||+..+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~- 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIF- 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEE-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEE-
Confidence 46799999999999999999999999 8 8999998765 899999999999999999 9999988
Q ss_pred cCCccceEEEe
Q 005357 210 RGCDQPLTVRF 220 (700)
Q Consensus 210 ~g~gr~L~V~~ 220 (700)
+|+.|+|+.
T Consensus 78 --~g~~l~V~r 86 (87)
T 2hzc_A 78 --QGQSLKIRR 86 (87)
T ss_dssp --TTEECEEEC
T ss_pred --CCeEEEEeC
Confidence 789999874
No 353
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.35 E-value=2.6e-12 Score=132.67 Aligned_cols=87 Identities=20% Similarity=0.284 Sum_probs=75.8
Q ss_pred CCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhccc-ccCCCcccccee
Q 005357 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQ-HTLPGGVGPIQV 128 (700)
Q Consensus 50 ~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~-~~~~g~~~~l~V 128 (700)
..++|||+||+.++|+++|+++|+.||.|++|+|+.| .+|+++|||||+|.+.++|.+||+.|++. .++.+..+.|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4679999999999999999999999999999999999 58999999999999999999999999544 444555678889
Q ss_pred ecccccccc
Q 005357 129 RYADGERER 137 (700)
Q Consensus 129 ~~a~~~~~~ 137 (700)
.+++.....
T Consensus 174 ~~~~~~~~~ 182 (261)
T 3sde_A 174 EPMEQFDDE 182 (261)
T ss_dssp EECCCEESS
T ss_pred eeccccCcc
Confidence 888765443
No 354
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=3.4e-12 Score=115.03 Aligned_cols=83 Identities=16% Similarity=0.225 Sum_probs=70.2
Q ss_pred CcccceeeccCCCccc-----------cHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCce
Q 005357 139 GAVEYKLFVGSLNKQA-----------TEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIY 207 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~-----------teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~ 207 (700)
...+++|+|.||-... ++++|+++|++||.|++|.| .++ .++|||||+|++.++|.+|++.|||..
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 4457889999994332 36899999999999999966 443 379999999999999999999999998
Q ss_pred eccCCccceEEEecCCCCCC
Q 005357 208 TMRGCDQPLTVRFADPKRPR 227 (700)
Q Consensus 208 ~~~g~gr~L~V~~a~~k~~r 227 (700)
+ +++.|+|.|++++...
T Consensus 89 ~---~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 89 F---GGRQITAQAWDGTTDY 105 (112)
T ss_dssp E---TTEECEEEECCSCCCS
T ss_pred E---CCcEEEEEEeCCCCCc
Confidence 8 7999999999886543
No 355
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.33 E-value=2.4e-12 Score=133.82 Aligned_cols=81 Identities=23% Similarity=0.514 Sum_probs=74.1
Q ss_pred cccceeeccCCCccccHHHHH----HHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccc
Q 005357 140 AVEYKLFVGSLNKQATEKEVE----EIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQP 215 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~----~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~ 215 (700)
..+++|||+||++++++++|+ ++|+.||.|++|+|++ +++++|||||+|++.++|.+|++.|||..+ +++.
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~ 81 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPF---YDKP 81 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCee---CCcE
Confidence 457899999999999999977 8999999999999886 677899999999999999999999999888 7899
Q ss_pred eEEEecCCCC
Q 005357 216 LTVRFADPKR 225 (700)
Q Consensus 216 L~V~~a~~k~ 225 (700)
|+|+|++.+.
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 9999997764
No 356
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.33 E-value=2.6e-12 Score=127.30 Aligned_cols=79 Identities=16% Similarity=0.371 Sum_probs=68.3
Q ss_pred CCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccceee
Q 005357 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVR 129 (700)
Q Consensus 50 ~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V~ 129 (700)
..++|||+|||.++|+++|+++|+.||.|.+|+|+++. +++++|||||+|++.++|++||+.++ . .+.| +.|+|.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~-~~~G--r~l~V~ 182 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-Q-KYKE--TDLLIL 182 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-C-EETT--EECEEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-C-eECC--EEEEEE
Confidence 46899999999999999999999999999999999986 49999999999999999999998763 3 4555 457777
Q ss_pred cccc
Q 005357 130 YADG 133 (700)
Q Consensus 130 ~a~~ 133 (700)
+.+.
T Consensus 183 ~~~~ 186 (193)
T 2voo_A 183 FKDD 186 (193)
T ss_dssp ETTT
T ss_pred EhHH
Confidence 6654
No 357
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=7.6e-12 Score=112.75 Aligned_cols=81 Identities=21% Similarity=0.299 Sum_probs=65.8
Q ss_pred CCCCCceEEEeCCCCCC-----------cHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc
Q 005357 47 DGSSFAKLFVGSVPKTA-----------REEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHN 115 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~~v-----------teedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g 115 (700)
....+++|+|.||-... ++++|+++|++||.|++|.| .++ .++|||||+|++.++|++||+.||+
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 45678999999994332 26899999999999999966 554 3799999999999999999999988
Q ss_pred cccCCCccccceeeccccc
Q 005357 116 QHTLPGGVGPIQVRYADGE 134 (700)
Q Consensus 116 ~~~~~g~~~~l~V~~a~~~ 134 (700)
..+ .| +.|+|.+++..
T Consensus 87 ~~~-~g--r~l~v~~a~~~ 102 (112)
T 2dit_A 87 RWF-GG--RQITAQAWDGT 102 (112)
T ss_dssp CEE-TT--EECEEEECCSC
T ss_pred CEE-CC--cEEEEEEeCCC
Confidence 665 33 56888887654
No 358
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=99.31 E-value=6.3e-13 Score=97.66 Aligned_cols=34 Identities=41% Similarity=0.882 Sum_probs=31.2
Q ss_pred CCCCCceeeeCCCCCcccccCCcCcccccCChhh
Q 005357 556 PAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEEL 589 (700)
Q Consensus 556 ~~~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~~ 589 (700)
+..+.|+||+++||++||||.+|+||+||||++|
T Consensus 7 ~~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~~~ 40 (40)
T 2ysi_A 7 GTEEIWVENKTPDGKVYYYNARTRESAWTKPDGV 40 (40)
T ss_dssp CCCCSEEEEECTTSCEEEEETTTCCEESSCCSCC
T ss_pred CCCCCCEEEECCCCCEEEEECCCCCEEeCCCCCC
Confidence 3457899999999999999999999999999975
No 359
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.30 E-value=3.9e-12 Score=122.30 Aligned_cols=78 Identities=14% Similarity=0.378 Sum_probs=67.6
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCccccce
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
....++|||+|||.++|+++|+++|+.||.|..+ ..++.++|||||+|++.++|++|++.|++..+ .| +.|+
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~~i~ 167 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI-DG--RSVS 167 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEE-TT--EEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEE-CC--eEEE
Confidence 4567899999999999999999999999987766 45789999999999999999999999988555 44 5588
Q ss_pred eecccc
Q 005357 128 VRYADG 133 (700)
Q Consensus 128 V~~a~~ 133 (700)
|+++..
T Consensus 168 v~~a~~ 173 (175)
T 1fje_B 168 LYYTGE 173 (175)
T ss_dssp EEECSS
T ss_pred EEecCC
Confidence 888764
No 360
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.28 E-value=7.7e-12 Score=111.85 Aligned_cols=81 Identities=19% Similarity=0.257 Sum_probs=68.3
Q ss_pred ccceeeccCC--Ccc--------ccHHHHHHHhcCCCceeEEEEeeCCCC---CccceEEEEeCCHHHHHHHHHHhcCce
Q 005357 141 VEYKLFVGSL--NKQ--------ATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAINALNGIY 207 (700)
Q Consensus 141 ~s~~LfV~nL--p~~--------~teedL~~~F~~fG~V~~v~I~~d~~g---~srG~aFVeF~~~e~A~~Ai~~Lng~~ 207 (700)
.++.|.|.|+ +.+ ..++||+++|++||.|++|+|+++..+ .++||+||+|++.++|.+|++.|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4556777776 222 345799999999999999999988643 679999999999999999999999999
Q ss_pred eccCCccceEEEecCCC
Q 005357 208 TMRGCDQPLTVRFADPK 224 (700)
Q Consensus 208 ~~~g~gr~L~V~~a~~k 224 (700)
+ +||.|+|.|.+..
T Consensus 84 f---~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 F---ANRVVVTKYCDPD 97 (105)
T ss_dssp E---TTEECEEEEECHH
T ss_pred e---CCCEEEEEEeCHH
Confidence 8 8999999998754
No 361
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.27 E-value=2.7e-12 Score=114.55 Aligned_cols=72 Identities=22% Similarity=0.377 Sum_probs=62.5
Q ss_pred ccCCCccccHHHHHHHh------------cCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCcc
Q 005357 147 VGSLNKQATEKEVEEIF------------SPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQ 214 (700)
Q Consensus 147 V~nLp~~~teedL~~~F------------~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr 214 (700)
+.+|++++++++|+++| ++||.|++|+|+++..+.++|||||+|++.++|.+|++.|||+.+ +||
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~---~Gr 96 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWF---NGQ 96 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEE---TTE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEE---CCE
Confidence 45666666666655544 999999999999988888999999999999999999999999998 899
Q ss_pred ceEEEec
Q 005357 215 PLTVRFA 221 (700)
Q Consensus 215 ~L~V~~a 221 (700)
.|+|+|+
T Consensus 97 ~i~v~~s 103 (104)
T 1jmt_A 97 PIHAELS 103 (104)
T ss_dssp ECCEEEC
T ss_pred EEEEEEc
Confidence 9999986
No 362
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.27 E-value=7.2e-12 Score=126.77 Aligned_cols=80 Identities=24% Similarity=0.401 Sum_probs=73.8
Q ss_pred CcccceeeccCCCc-cccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceE
Q 005357 139 GAVEYKLFVGSLNK-QATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217 (700)
Q Consensus 139 ~~~s~~LfV~nLp~-~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~ 217 (700)
...+++|||+||++ ++++++|+++|++||.|++|+|++++ +|||||+|.+.++|.+|++.|++..+ +++.|+
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~---~g~~l~ 103 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKL---HGKPIR 103 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBC---SSSBCE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeE---CCeEEE
Confidence 45578999999999 99999999999999999999999874 78999999999999999999999888 789999
Q ss_pred EEecCCCC
Q 005357 218 VRFADPKR 225 (700)
Q Consensus 218 V~~a~~k~ 225 (700)
|.+++.+.
T Consensus 104 v~~a~~~~ 111 (229)
T 2adc_A 104 ITLSKHQN 111 (229)
T ss_dssp EECCSCCC
T ss_pred EEEecCcc
Confidence 99998764
No 363
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.27 E-value=8.9e-12 Score=127.26 Aligned_cols=82 Identities=23% Similarity=0.397 Sum_probs=68.8
Q ss_pred CCCCceEEEeCCCCCC---------cHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhccccc
Q 005357 48 GSSFAKLFVGSVPKTA---------REEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHT 118 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~v---------teedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~ 118 (700)
....++|||+||+.++ +|++|+++|+.||+|++|+|+.+ ||||||+|.+.++|++|+++|++..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4568999999999998 89999999999999999999864 68999999999999999999998776
Q ss_pred CC---------Cccccceeecccccc
Q 005357 119 LP---------GGVGPIQVRYADGER 135 (700)
Q Consensus 119 ~~---------g~~~~l~V~~a~~~~ 135 (700)
+. +..+.|.|+|++.+.
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 31 134568999987543
No 364
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=99.24 E-value=7.3e-13 Score=101.73 Aligned_cols=38 Identities=37% Similarity=0.869 Sum_probs=33.9
Q ss_pred CCCCceeeeCCCCCcccccCCcCcccccCChhhhHHHH
Q 005357 557 AKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQ 594 (700)
Q Consensus 557 ~~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~~~~~~~ 594 (700)
..+.|+||+++||++||||++|+||+||||++|+...+
T Consensus 5 ~~~~W~e~~s~~G~~YYyN~~T~eS~WekP~~~~~~~~ 42 (50)
T 2dk1_A 5 SSGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLK 42 (50)
T ss_dssp CSCCEEECCCSTTCCCEEESSSCCEESSCCTTCCCCCS
T ss_pred CCCCeEEEECCCCCEEEEECCCCCEEeeCChhhhhhHH
Confidence 35689999999999999999999999999999975543
No 365
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.24 E-value=6.5e-12 Score=123.47 Aligned_cols=77 Identities=22% Similarity=0.392 Sum_probs=71.7
Q ss_pred cceeeccCCCc-cccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEe
Q 005357 142 EYKLFVGSLNK-QATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220 (700)
Q Consensus 142 s~~LfV~nLp~-~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~ 220 (700)
+++|||+||+. ++++++|+++|+.||.|++|+|++++ +|||||+|.+.++|.+|++.|++..+ +++.|+|.+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~---~g~~l~v~~ 75 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKL---HGKPIRITL 75 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCC---SSCCCEEEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCee---cCeEEEEEE
Confidence 57999999999 99999999999999999999998874 78999999999999999999999888 789999999
Q ss_pred cCCCC
Q 005357 221 ADPKR 225 (700)
Q Consensus 221 a~~k~ 225 (700)
++.+.
T Consensus 76 a~~~~ 80 (198)
T 1qm9_A 76 SKHQN 80 (198)
T ss_dssp CCCCS
T ss_pred ecCCC
Confidence 98764
No 366
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.23 E-value=1.5e-11 Score=131.94 Aligned_cols=79 Identities=18% Similarity=0.313 Sum_probs=67.0
Q ss_pred CCCCceEEEeC--CCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCC--cc
Q 005357 48 GSSFAKLFVGS--VPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPG--GV 123 (700)
Q Consensus 48 ~~~~~tLfVgn--LP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g--~~ 123 (700)
..++++|||+| |++++||++|+++|++||+|++|++.. +||||||+|++.++|++||+.||+..++.. +.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 56788999999 578999999999999999999987743 468999999999999999999999888533 43
Q ss_pred ccceeeccc
Q 005357 124 GPIQVRYAD 132 (700)
Q Consensus 124 ~~l~V~~a~ 132 (700)
..|.+.+..
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 467777764
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=3.8e-11 Score=106.48 Aligned_cols=69 Identities=17% Similarity=0.324 Sum_probs=59.6
Q ss_pred CccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEecCCCCCCC
Q 005357 151 NKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRP 228 (700)
Q Consensus 151 p~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~~k~~r~ 228 (700)
+.++++++|+++|++||.|++|+|+ +.++|||||+|++.++|.+|++.+++ + .++.|+|+|++.+..+.
T Consensus 26 ~~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~---~g~~l~V~~a~~~~~~~ 94 (100)
T 2d9o_A 26 KGGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNEVG--L---VDNPLKISWLEGQPQDA 94 (100)
T ss_dssp CCSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTCCB--C---SSSBCEEECSSCCCCCC
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhcCC--C---CCCeEEEEEccCCCCCC
Confidence 3578999999999999999999998 35799999999999999999998655 2 58999999998875443
No 368
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=2.6e-12 Score=104.83 Aligned_cols=38 Identities=24% Similarity=0.525 Sum_probs=34.2
Q ss_pred CCCCceeeeCCCCCcccccCCcCcccccCChhhhHHHH
Q 005357 557 AKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQ 594 (700)
Q Consensus 557 ~~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~~~~~~~ 594 (700)
+.+.|.||++.|||+||||..||+|+||||+||+...+
T Consensus 18 pgt~W~~v~T~dGR~fyyN~~Tk~S~WekP~eLk~~~e 55 (73)
T 2dk7_A 18 PGTPWCVVWTGDERVFFYNPTTRLSMWDRPDDLIGRAD 55 (73)
T ss_dssp SSSSCEEEEESSSCEEEEETTTTEECSSCCTTTTTCSH
T ss_pred CCCCcEEEECCCCCEEEecCcccceeccCChHhcCHHH
Confidence 34689999999999999999999999999999996643
No 369
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.22 E-value=1.7e-11 Score=109.65 Aligned_cols=83 Identities=16% Similarity=0.267 Sum_probs=68.2
Q ss_pred CCCceEEEeCC--CCCC--------cHHHHHHHHhccCCeeEEEEeecCCC--CCcccEEEEEeCCHHHHHHHHHHhccc
Q 005357 49 SSFAKLFVGSV--PKTA--------REEDIRPLFEEHGNVIEVALIKDKKT--GQQQGCCFIKYATSEEADRAIRALHNQ 116 (700)
Q Consensus 49 ~~~~tLfVgnL--P~~v--------teedL~elF~~~G~V~~i~i~~d~~T--g~skG~aFVeF~~~edA~~Ai~~L~g~ 116 (700)
.+++.|.|.|+ +.++ .++||+++|++||.|++|+|++++.+ ++++|||||+|++.++|++|++.||+.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46789999998 2333 35799999999999999999998765 478999999999999999999999986
Q ss_pred ccCCCccccceeeccccc
Q 005357 117 HTLPGGVGPIQVRYADGE 134 (700)
Q Consensus 117 ~~~~g~~~~l~V~~a~~~ 134 (700)
.+ .| +.|+|.+.+.+
T Consensus 83 ~f-~G--R~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KF-AN--RVVVTKYCDPD 97 (105)
T ss_dssp EE-TT--EECEEEEECHH
T ss_pred Ee-CC--CEEEEEEeCHH
Confidence 65 33 56888876543
No 370
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.22 E-value=1.9e-11 Score=111.69 Aligned_cols=81 Identities=16% Similarity=0.261 Sum_probs=67.8
Q ss_pred CCceEEEeCCCC-----CCcHHHHHHHHhccCCeeEEEEeecCC----CCCcccEEEEEeCCHHHHHHHHHHhcccccCC
Q 005357 50 SFAKLFVGSVPK-----TAREEDIRPLFEEHGNVIEVALIKDKK----TGQQQGCCFIKYATSEEADRAIRALHNQHTLP 120 (700)
Q Consensus 50 ~~~tLfVgnLP~-----~vteedL~elF~~~G~V~~i~i~~d~~----Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~ 120 (700)
++++|+|.|+-. +-.++||+++|++||+|++|+|++++. +++++||+||+|++.++|++|++.||+..+ .
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f-~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF-A 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE-T
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE-C
Confidence 678999999841 224789999999999999999999865 467899999999999999999999998665 3
Q ss_pred Cccccceeecccc
Q 005357 121 GGVGPIQVRYADG 133 (700)
Q Consensus 121 g~~~~l~V~~a~~ 133 (700)
| +.|+|.+.+.
T Consensus 98 G--R~i~v~~~~~ 108 (118)
T 3ue2_A 98 G--RKVVAEVYDQ 108 (118)
T ss_dssp T--EECEEEEECH
T ss_pred C--cEEEEEEcCh
Confidence 3 5578877654
No 371
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.22 E-value=2.1e-11 Score=111.31 Aligned_cols=81 Identities=21% Similarity=0.263 Sum_probs=69.1
Q ss_pred ccceeeccCCCc--c---ccHHHHHHHhcCCCceeEEEEeeCCC-----CCccceEEEEeCCHHHHHHHHHHhcCceecc
Q 005357 141 VEYKLFVGSLNK--Q---ATEKEVEEIFSPYGRVEDVYLMRDEL-----KQSRGCGFVKYSHRDMALAAINALNGIYTMR 210 (700)
Q Consensus 141 ~s~~LfV~nLp~--~---~teedL~~~F~~fG~V~~v~I~~d~~-----g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~ 210 (700)
.+++|+|.|+-. + -.++||+++|++||.|++|+|+++.. +.++||+||+|++.++|.+|++.|||+.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f-- 96 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF-- 96 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE--
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE--
Confidence 466788888732 1 23689999999999999999998853 45789999999999999999999999998
Q ss_pred CCccceEEEecCCC
Q 005357 211 GCDQPLTVRFADPK 224 (700)
Q Consensus 211 g~gr~L~V~~a~~k 224 (700)
+||.|+|.|+...
T Consensus 97 -~GR~i~v~~~~~~ 109 (118)
T 3ue2_A 97 -AGRKVVAEVYDQE 109 (118)
T ss_dssp -TTEECEEEEECHH
T ss_pred -CCcEEEEEEcChH
Confidence 8999999998753
No 372
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.5e-10 Score=102.52 Aligned_cols=77 Identities=18% Similarity=0.327 Sum_probs=61.9
Q ss_pred CCceEEEeCCC-------CCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCc
Q 005357 50 SFAKLFVGSVP-------KTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGG 122 (700)
Q Consensus 50 ~~~tLfVgnLP-------~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~ 122 (700)
...+|-|.-.. .++++++|+++|++||+|++|+|+ ++++|||||+|++.++|++||+.+++ +.
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~---~~-- 78 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG---LV-- 78 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB---CS--
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC---CC--
Confidence 35677777654 458999999999999999999997 36789999999999999999998543 22
Q ss_pred cccceeeccccccc
Q 005357 123 VGPIQVRYADGERE 136 (700)
Q Consensus 123 ~~~l~V~~a~~~~~ 136 (700)
.+.|+|+|++....
T Consensus 79 g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 79 DNPLKISWLEGQPQ 92 (100)
T ss_dssp SSBCEEECSSCCCC
T ss_pred CCeEEEEEccCCCC
Confidence 35688998876543
No 373
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.17 E-value=4.1e-11 Score=128.57 Aligned_cols=79 Identities=18% Similarity=0.309 Sum_probs=68.4
Q ss_pred CcccceeeccC--CCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCcc--
Q 005357 139 GAVEYKLFVGS--LNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQ-- 214 (700)
Q Consensus 139 ~~~s~~LfV~n--Lp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr-- 214 (700)
...+++|||+| |++.++|++|+++|++||+|++|.|.. +||||||+|++.++|++||+.|||+.++...|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 45578999998 578999999999999999999987753 489999999999999999999999998654445
Q ss_pred ceEEEecC
Q 005357 215 PLTVRFAD 222 (700)
Q Consensus 215 ~L~V~~a~ 222 (700)
.|.|.|.+
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 68888885
No 374
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.16 E-value=1.6e-11 Score=109.59 Aligned_cols=72 Identities=19% Similarity=0.421 Sum_probs=58.7
Q ss_pred EeCCCCCCcHHHHHHHH------------hccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcc
Q 005357 56 VGSVPKTAREEDIRPLF------------EEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGV 123 (700)
Q Consensus 56 VgnLP~~vteedL~elF------------~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~ 123 (700)
+.+|+.++++++|++.| ++||+|++|+|++++. ++++|||||+|++.++|++|++.||+..+ .|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~-~G-- 95 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWF-NG-- 95 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEE-TT--
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEE-CC--
Confidence 56677777887776666 9999999999998864 78999999999999999999999988655 44
Q ss_pred ccceeecc
Q 005357 124 GPIQVRYA 131 (700)
Q Consensus 124 ~~l~V~~a 131 (700)
+.|+|.++
T Consensus 96 r~i~v~~s 103 (104)
T 1jmt_A 96 QPIHAELS 103 (104)
T ss_dssp EECCEEEC
T ss_pred EEEEEEEc
Confidence 44666654
No 375
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A
Probab=99.15 E-value=7.7e-12 Score=92.39 Aligned_cols=32 Identities=66% Similarity=1.178 Sum_probs=27.4
Q ss_pred CCCCceeeeCCCCCcccccCCcCcccccCChh
Q 005357 557 AKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 588 (700)
Q Consensus 557 ~~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~ 588 (700)
..+.|+||+++||++||||++|+||+||||++
T Consensus 10 ~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~e 41 (41)
T 1ywi_A 10 AKSMWTEHKSPDGRTYYYNTETKQSTWEKPDD 41 (41)
T ss_dssp --CCEEEEEETTTEEEEEETTTTEEEESCC--
T ss_pred CCCCcEEEECCCCCEEEEECCCCCEEeCCCCC
Confidence 35689999999999999999999999999975
No 376
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.01 E-value=4.6e-10 Score=101.85 Aligned_cols=64 Identities=25% Similarity=0.381 Sum_probs=57.7
Q ss_pred cHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEecCCC
Q 005357 155 TEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224 (700)
Q Consensus 155 teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~~k 224 (700)
.++||+++|++||.|++|.|.++. .+||+||+|++.++|.+|++.|||+.+ +||.|+|.|+...
T Consensus 30 l~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f---~GR~i~v~~~~~~ 93 (114)
T 3s6e_A 30 IKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWF---AGKMITAAYVPLP 93 (114)
T ss_dssp HHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEE---TTEECEEEEECHH
T ss_pred HHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEE---CCEEEEEEEEcHH
Confidence 457899999999999999997653 589999999999999999999999998 8999999998753
No 377
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.92 E-value=2.2e-09 Score=97.39 Aligned_cols=77 Identities=23% Similarity=0.326 Sum_probs=61.6
Q ss_pred CCCceEEEeCCCC----------CCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhccccc
Q 005357 49 SSFAKLFVGSVPK----------TAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHT 118 (700)
Q Consensus 49 ~~~~tLfVgnLP~----------~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~ 118 (700)
.+++.|.|.|+=. +-.++||+++|++||.|++|+|.++. .+||+||+|++.++|++|++.||+..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4577899999832 12346889999999999999986653 589999999999999999999998665
Q ss_pred CCCccccceeeccc
Q 005357 119 LPGGVGPIQVRYAD 132 (700)
Q Consensus 119 ~~g~~~~l~V~~a~ 132 (700)
+| +.|+|.+..
T Consensus 81 -~G--R~i~v~~~~ 91 (114)
T 3s6e_A 81 -AG--KMITAAYVP 91 (114)
T ss_dssp -TT--EECEEEEEC
T ss_pred -CC--EEEEEEEEc
Confidence 44 557777764
No 378
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.88 E-value=4.9e-09 Score=95.80 Aligned_cols=64 Identities=19% Similarity=0.244 Sum_probs=58.4
Q ss_pred CCCCCCceEEEeCCCCC-CcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCC-HHHHHHHHHHhcc
Q 005357 46 VDGSSFAKLFVGSVPKT-AREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYAT-SEEADRAIRALHN 115 (700)
Q Consensus 46 ~~~~~~~tLfVgnLP~~-vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~-~edA~~Ai~~L~g 115 (700)
..-...+.|||+||+.+ +++++|+++|+.||+|..|+++++.. .|||+|.+ .++|++|++.|+.
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~ 78 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANN 78 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTT
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhc
Confidence 44567899999999999 99999999999999999999999876 69999999 8999999999864
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.75 E-value=2.9e-08 Score=99.66 Aligned_cols=68 Identities=25% Similarity=0.306 Sum_probs=60.9
Q ss_pred ccHHHHHHHhcCCCceeEEEEeeCCC-----CCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEecCCC
Q 005357 154 ATEKEVEEIFSPYGRVEDVYLMRDEL-----KQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224 (700)
Q Consensus 154 ~teedL~~~F~~fG~V~~v~I~~d~~-----g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~~k 224 (700)
-.++||++.|++||.|++|.|+++.. +.++|++||+|++.++|.+|++.|||+.+ +||.|.|.|....
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~---~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF---AGRKVVAEVYDQE 213 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS---SSSBCEEEECCHH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE---CCeEEEEEEcCHH
Confidence 45689999999999999999986643 48899999999999999999999999988 8999999998753
No 380
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=1.6e-08 Score=92.36 Aligned_cols=75 Identities=13% Similarity=0.190 Sum_probs=64.1
Q ss_pred ccceeeccCCCcc-ccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCC-HHHHHHHHHHhc--CceeccCCccce
Q 005357 141 VEYKLFVGSLNKQ-ATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSH-RDMALAAINALN--GIYTMRGCDQPL 216 (700)
Q Consensus 141 ~s~~LfV~nLp~~-~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~-~e~A~~Ai~~Ln--g~~~~~g~gr~L 216 (700)
..+.|||+||+++ +++++|+++|+.||.|.+|+|.++.. .|||+|.+ .++|.+|+++++ +..+ ++..+
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i---~g~~~ 88 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQL---RNKEV 88 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCT---TSSSE
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEE---eCcEE
Confidence 4578999999999 99999999999999999999988744 69999999 899999999995 3333 66888
Q ss_pred EEEecCC
Q 005357 217 TVRFADP 223 (700)
Q Consensus 217 ~V~~a~~ 223 (700)
+++..+.
T Consensus 89 ~~evL~G 95 (121)
T 1owx_A 89 TWEVLEG 95 (121)
T ss_dssp EEEECCH
T ss_pred EEEECCC
Confidence 8877654
No 381
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=1.4e-08 Score=87.55 Aligned_cols=57 Identities=23% Similarity=0.414 Sum_probs=53.0
Q ss_pred HHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEecCCC
Q 005357 157 KEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224 (700)
Q Consensus 157 edL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~~k 224 (700)
.+|.+.|..||+|..++|+.+ .+||+|++.++|.+|++ |||..+ ++|.|+|+++++.
T Consensus 30 ~~L~~~F~~~G~Vi~vr~~~d-------~~fVtF~d~~sAlaAi~-mnG~~v---~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 30 DELLQQFASFGEVILIRFVED-------KMWVTFLEGSSALNVLS-LNGKEL---LNRTITIALKSPS 86 (91)
T ss_dssp HHHHHHHHTTCCEEEEEECSS-------SEEEEESSHHHHHHGGG-GTTCEE---TTEEEEEEECCCS
T ss_pred HHHHHHHHhCCCeEEEEEecC-------CEEEEECChHHHHHHHh-cCCeEe---CCeEEEEEeCCCC
Confidence 678999999999999999987 48999999999999999 999998 8999999999874
No 382
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=98.71 E-value=7.2e-09 Score=90.31 Aligned_cols=38 Identities=58% Similarity=0.998 Sum_probs=34.1
Q ss_pred CCCCceeeeCCCCCcccccCCcCcccccCChhhhHHHH
Q 005357 557 AKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQ 594 (700)
Q Consensus 557 ~~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~~~~~~~ 594 (700)
....|.|+++++||+||||..|++|+||||.++....+
T Consensus 12 lp~~W~e~~~~~Gr~YYyN~~T~~s~We~P~~~~~~~e 49 (92)
T 2l5f_A 12 AKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAE 49 (92)
T ss_dssp TTTTEEEEECTTSCEEEEETTTTEEESSCSGGGTCHHH
T ss_pred CCCCcEEEEcCCCCEEEEECCCCceecccCcccccccc
Confidence 45679999999999999999999999999999886544
No 383
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=98.65 E-value=5.7e-09 Score=87.45 Aligned_cols=34 Identities=44% Similarity=1.047 Sum_probs=31.4
Q ss_pred CCCceeeeCCCCCcccccCCcCcccccCChhhhH
Q 005357 558 KSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTL 591 (700)
Q Consensus 558 ~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~~~~ 591 (700)
...|+|++++|||+||||.+|++|+||||.+|+.
T Consensus 4 ~~~W~e~~~~~G~~YYyN~~T~~s~We~P~~~~~ 37 (75)
T 2jxw_A 4 KGRWVEGITSEGYHYYYDLISGASQWEKPEGFQG 37 (75)
T ss_dssp CCCEEEEEETTTEEEEEETTTTEEECSCCSSCSS
T ss_pred CCCcEEEECCCCCEEEEECCCCCEeecCCCcccc
Confidence 4679999999999999999999999999998754
No 384
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.64 E-value=1.4e-08 Score=74.48 Aligned_cols=31 Identities=35% Similarity=0.841 Sum_probs=28.6
Q ss_pred CCCceeeeCCCCCcccccCCcCcccccCChh
Q 005357 558 KSSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 588 (700)
Q Consensus 558 ~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~ 588 (700)
...|.|+++++||.||||.+|++|+||+|..
T Consensus 9 P~gW~~~~d~~Gr~YY~n~~T~~t~We~P~~ 39 (40)
T 2ysh_A 9 PPGWQSYLSPQGRRYYVNTTTNETTWERPSS 39 (40)
T ss_dssp CTTCEEEECTTSCEEEECSSSCCEESSSCCC
T ss_pred CCCceEEECCCCCEEEEECCCCCEeCCCCCC
Confidence 4579999999999999999999999999963
No 385
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=98.58 E-value=2e-08 Score=72.31 Aligned_cols=31 Identities=35% Similarity=0.765 Sum_probs=28.7
Q ss_pred CCCceeeeCCCCCcccccCCcCcccccCChh
Q 005357 558 KSSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 588 (700)
Q Consensus 558 ~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~ 588 (700)
...|.++.+++||.||||..|++|+||+|..
T Consensus 5 P~gW~~~~~~~G~~Yy~n~~t~~t~W~~P~~ 35 (37)
T 1e0m_A 5 PPGWDEYKTHNGKTYYYNHNTKTSTWTDPRM 35 (37)
T ss_dssp CTTEEEEECSSCCEEEEETTTTEEESSCTTT
T ss_pred CCCcEEEECCCCCEEEEECCCCCeeeeCcCC
Confidence 3579999999999999999999999999974
No 386
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=98.58 E-value=8.5e-09 Score=89.86 Aligned_cols=37 Identities=46% Similarity=0.816 Sum_probs=33.9
Q ss_pred CCCceeeeCCCCCcccccCCcCcccccCChhhhHHHH
Q 005357 558 KSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQ 594 (700)
Q Consensus 558 ~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~~~~~~~ 594 (700)
.+.|.|+++.|||+||||.+|++|+||+|++|+++++
T Consensus 54 ~~~W~~~~~~~Gr~Yy~N~~T~~s~We~P~~~~~~~~ 90 (92)
T 2l5f_A 54 KCPWKEYKSDSGKTYYYNSQTKESRWAKPKELEDLEG 90 (92)
T ss_dssp SCSEEEEECTTCCEEEEETTTTEEESCCCHHHHTSSS
T ss_pred ccceEEEECCCCCEEEEECCCCCeeccCchhHhhhhc
Confidence 4689999999999999999999999999999987653
No 387
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=98.54 E-value=1.8e-08 Score=75.09 Aligned_cols=32 Identities=31% Similarity=0.746 Sum_probs=29.7
Q ss_pred CCceeeeCCCCCcccccCCcCcccccCChhhh
Q 005357 559 SSWTEHTSPDGYKYYYNCVTGVSKWEKPEELT 590 (700)
Q Consensus 559 ~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~~~ 590 (700)
..|.++++++||+||||..|++|+||+|..+.
T Consensus 11 ~gW~~~~~~~Gr~YY~n~~T~~t~We~P~~~~ 42 (43)
T 1ymz_A 11 PGWERRTDVEGKVYYFNVRTLTTTWERPTIIL 42 (43)
T ss_dssp SSEEEEECTTSCEEEEETTTTEEESSCCCSCC
T ss_pred CCCEEEECCCCCEEEEECCCCCCcccCCcccc
Confidence 57999999999999999999999999998764
No 388
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=98.53 E-value=2e-08 Score=84.08 Aligned_cols=32 Identities=53% Similarity=1.124 Sum_probs=29.7
Q ss_pred CCCCceeeeCCCCCcccccCCcCcccccCChh
Q 005357 557 AKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 588 (700)
Q Consensus 557 ~~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~ 588 (700)
..+.|.|++++|||+||||.+|++|+||+|+|
T Consensus 44 ~~~~W~~~~~~~Gr~YyyN~~T~~s~We~P~e 75 (75)
T 2jxw_A 44 VKTVWVEGLSEDGFTYYYNTETGESRWEKPDD 75 (75)
T ss_dssp CCCSEEEEEETTTEEEEEETTTTEEESSCCCC
T ss_pred CCccEEEEECCCCCEEEEECcCCCEeccCcCC
Confidence 45689999999999999999999999999975
No 389
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=98.53 E-value=2.4e-08 Score=66.66 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=24.2
Q ss_pred CceeeeCCCCCcccccCCcCcccccCC
Q 005357 560 SWTEHTSPDGYKYYYNCVTGVSKWEKP 586 (700)
Q Consensus 560 ~w~e~~~~~g~~yyyn~~t~~s~w~kp 586 (700)
.|. +...+||.||||+.|+||+||+|
T Consensus 2 gWe-~~~~~g~~YYyN~~T~~s~We~P 27 (27)
T 1e0n_A 2 GWE-IIHENGRPLYYNAEQKTKLHYPP 27 (27)
T ss_dssp CEE-EEESSSSEEEEETTTTEEESSCC
T ss_pred CCe-EECCCCCeEEEECCCCCEeccCC
Confidence 588 88889999999999999999998
No 390
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.49 E-value=9.8e-08 Score=82.75 Aligned_cols=74 Identities=14% Similarity=0.272 Sum_probs=61.4
Q ss_pred CcccceeeccCCCcc-----ccH----HHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceec
Q 005357 139 GAVEYKLFVGSLNKQ-----ATE----KEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTM 209 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~-----~te----edL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~ 209 (700)
+....+|+|.-++.+ ..+ .+|.+.|..||+|..++|..+ -+||+|.+.++|.+||+ |||..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-------~~fVtF~d~~sAl~AI~-ldG~~v- 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-------QMLVTFADSHSALSVLD-VDGMKV- 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-------EEEEECSCSHHHHHHHH-GGGSEE-
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-------cEEEEEcChHHHHHHHh-cCCeee-
Confidence 445667888776522 222 568899999999999999988 39999999999999998 999999
Q ss_pred cCCccceEEEecCC
Q 005357 210 RGCDQPLTVRFADP 223 (700)
Q Consensus 210 ~g~gr~L~V~~a~~ 223 (700)
++|.|+|++..+
T Consensus 83 --~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 83 --KGRAVKISGPSS 94 (95)
T ss_dssp --TTEEEEEECCCC
T ss_pred --CCeEEEEeccCC
Confidence 899999998754
No 391
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.48 E-value=2e-07 Score=93.46 Aligned_cols=80 Identities=16% Similarity=0.264 Sum_probs=62.2
Q ss_pred CceEEEeCCC-----CCCcHHHHHHHHhccCCeeEEEEeecCC----CCCcccEEEEEeCCHHHHHHHHHHhcccccCCC
Q 005357 51 FAKLFVGSVP-----KTAREEDIRPLFEEHGNVIEVALIKDKK----TGQQQGCCFIKYATSEEADRAIRALHNQHTLPG 121 (700)
Q Consensus 51 ~~tLfVgnLP-----~~vteedL~elF~~~G~V~~i~i~~d~~----Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g 121 (700)
.+.+.+.|+- .+-.++||++.|++||+|.+|+|+++.. +++++|++||+|.+.++|++|++.|++..+ .|
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~-~g 202 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF-AG 202 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS-SS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE-CC
Confidence 3445555542 2346789999999999999999996544 458999999999999999999999988655 44
Q ss_pred ccccceeecccc
Q 005357 122 GVGPIQVRYADG 133 (700)
Q Consensus 122 ~~~~l~V~~a~~ 133 (700)
+.|.+.+...
T Consensus 203 --r~i~~~~~~~ 212 (222)
T 3dxb_A 203 --RKVVAEVYDQ 212 (222)
T ss_dssp --SBCEEEECCH
T ss_pred --eEEEEEEcCH
Confidence 4577777653
No 392
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=98.45 E-value=7.6e-08 Score=80.53 Aligned_cols=36 Identities=47% Similarity=0.828 Sum_probs=32.6
Q ss_pred CCceeeeCCCCCcccccCCcCcccccCChhhhHHHH
Q 005357 559 SSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQ 594 (700)
Q Consensus 559 ~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~~~~~~~ 594 (700)
+.|.|+++++||+||||.+|++|+||+|.++....+
T Consensus 2 ~~W~~~~~~~Gr~YY~n~~T~~s~W~~P~~~~~~~~ 37 (75)
T 1o6w_A 2 SIWKEAKDASGRIYYYNTLTKKSTWEKPKELISQEE 37 (75)
T ss_dssp CCEEEEECTTCCEEEEETTTTEEESSCCHHHHHHHH
T ss_pred CCCeEEECCCCCeEEEECCCCCEEeecchhhccccc
Confidence 469999999999999999999999999999876543
No 393
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=98.44 E-value=8.7e-08 Score=68.58 Aligned_cols=30 Identities=27% Similarity=0.671 Sum_probs=28.0
Q ss_pred CCCceeeeCCCCCcccccCCcCcccccCCh
Q 005357 558 KSSWTEHTSPDGYKYYYNCVTGVSKWEKPE 587 (700)
Q Consensus 558 ~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~ 587 (700)
...|.|+.+++|+.||||.+|++|+||+|.
T Consensus 6 P~GWe~~~d~~G~~Yy~n~~t~~t~We~P~ 35 (36)
T 1wr3_A 6 PPGWEEKVDNLGRTYYVNHNNRSTQWHRPS 35 (36)
T ss_dssp CTTEEEEECSSSCEEEEETTTCCEESSCSC
T ss_pred CCCCEEEECCCCCEEEEECCCCCEeeeCcC
Confidence 457999999999999999999999999995
No 394
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}
Probab=98.40 E-value=1.6e-07 Score=73.40 Aligned_cols=34 Identities=29% Similarity=0.686 Sum_probs=30.0
Q ss_pred CCCceeeeCC-CCCcccccCCcCcccccCChhhhH
Q 005357 558 KSSWTEHTSP-DGYKYYYNCVTGVSKWEKPEELTL 591 (700)
Q Consensus 558 ~~~w~e~~~~-~g~~yyyn~~t~~s~w~kp~~~~~ 591 (700)
...|.++.+. +||.||||..|++|+||+|.+...
T Consensus 9 P~GW~~~~~~~~Gr~YY~N~~T~~sqWe~P~~~~~ 43 (54)
T 2jv4_A 9 PAGWEVRHSNSKNLPYYFNPATRESRWEPPADTDM 43 (54)
T ss_dssp CSSCCEEECSSSSCEEEEETTTTEEESSCCTTSCH
T ss_pred CCCcEEEEECCCCCEEEEECCCCcEEecCCCCccH
Confidence 4579999986 899999999999999999998543
No 395
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.38 E-value=4.3e-07 Score=78.31 Aligned_cols=71 Identities=15% Similarity=0.284 Sum_probs=55.1
Q ss_pred CCceEEEeCCC----CCC-c---HHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCC
Q 005357 50 SFAKLFVGSVP----KTA-R---EEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPG 121 (700)
Q Consensus 50 ~~~tLfVgnLP----~~v-t---eedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g 121 (700)
+..||+|.-++ .+. + -.+|.+.|..||+|+.++++.|+ +||+|++.++|.+||+ |++..+ .|
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v-~G 75 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKEL-LN 75 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEE-TT
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEe-CC
Confidence 45678887765 223 3 25789999999999999999874 8999999999999998 988764 44
Q ss_pred ccccceeeccc
Q 005357 122 GVGPIQVRYAD 132 (700)
Q Consensus 122 ~~~~l~V~~a~ 132 (700)
+.|+|+.+.
T Consensus 76 --r~LkV~lkt 84 (91)
T 2dnr_A 76 --RTITIALKS 84 (91)
T ss_dssp --EEEEEEECC
T ss_pred --eEEEEEeCC
Confidence 446666554
No 396
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=98.37 E-value=1.8e-07 Score=68.98 Aligned_cols=30 Identities=23% Similarity=0.721 Sum_probs=28.2
Q ss_pred CCCceeeeCCCCCcccccCCcCcccccCCh
Q 005357 558 KSSWTEHTSPDGYKYYYNCVTGVSKWEKPE 587 (700)
Q Consensus 558 ~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~ 587 (700)
...|.++.+++||.||||.+|++|+||+|.
T Consensus 10 P~gWe~~~~~~G~~Yy~n~~t~~t~We~Pr 39 (41)
T 1wr7_A 10 PPGWEMRIAPNGRPFFIDHNTKTTTWEDPR 39 (41)
T ss_dssp CTTEEEEECTTSCEEEEETTTTEEESSCGG
T ss_pred CCCcEEEEcCCCCEEEEECCCCCeecCCCC
Confidence 467999999999999999999999999996
No 397
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=98.37 E-value=1.7e-07 Score=66.98 Aligned_cols=30 Identities=30% Similarity=0.713 Sum_probs=28.0
Q ss_pred CCCceeeeCCCCCcccccCCcCcccccCCh
Q 005357 558 KSSWTEHTSPDGYKYYYNCVTGVSKWEKPE 587 (700)
Q Consensus 558 ~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~ 587 (700)
...|.|+++++|++||||..|++|+||+|.
T Consensus 6 P~gWe~~~d~~g~~Yy~n~~t~~t~W~~P~ 35 (36)
T 1wr4_A 6 PSGWEERKDAKGRTYYVNHNNRTTTWTRPI 35 (36)
T ss_dssp CTTEEEEECSSSCEEEEETTTTEEESSCCC
T ss_pred CCCCEEEECCCCCEEEEECCCCCEeCcCCC
Confidence 457999999999999999999999999995
No 398
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=1.8e-07 Score=69.68 Aligned_cols=31 Identities=23% Similarity=0.691 Sum_probs=28.8
Q ss_pred CCCceeeeCCCCCcccccCCcCcccccCChh
Q 005357 558 KSSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 588 (700)
Q Consensus 558 ~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~ 588 (700)
...|.++.+++||.||||.+|++|+||+|..
T Consensus 9 P~GWe~~~d~~Gr~YY~n~~t~~T~We~P~~ 39 (43)
T 2dmv_A 9 PPGWEQRVDQHGRVYYVDHVEKRTTWDRPSG 39 (43)
T ss_dssp CTTEEEEECTTSCEEEEETTTCCEESSCSSS
T ss_pred CCCceEEECCCCCEEEEECCCCCEecCCcCC
Confidence 4679999999999999999999999999974
No 399
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}
Probab=98.36 E-value=8.6e-08 Score=74.29 Aligned_cols=31 Identities=32% Similarity=0.568 Sum_probs=28.0
Q ss_pred CCceeeeCC-CCCcccccCCcCcccccCChhh
Q 005357 559 SSWTEHTSP-DGYKYYYNCVTGVSKWEKPEEL 589 (700)
Q Consensus 559 ~~w~e~~~~-~g~~yyyn~~t~~s~w~kp~~~ 589 (700)
..|.++.+. +||.||||..|++|+||+|.+-
T Consensus 13 ~gW~~~~~~~~gr~YY~N~~T~~SqWe~P~~~ 44 (52)
T 2jx8_A 13 AGWEKCWSRRENRPYYFNRFTNQSLWEMPVLG 44 (52)
T ss_dssp HTCCEEEETTTTEEEEEETTTTEEESSCCCCT
T ss_pred cCcEEEEccccCCEEEEECCCCCEEeCCCCCC
Confidence 579999985 7999999999999999999764
No 400
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}
Probab=98.35 E-value=2.3e-07 Score=67.57 Aligned_cols=30 Identities=23% Similarity=0.659 Sum_probs=28.1
Q ss_pred CCCceeeeCCCCCcccccCCcCcccccCCh
Q 005357 558 KSSWTEHTSPDGYKYYYNCVTGVSKWEKPE 587 (700)
Q Consensus 558 ~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~ 587 (700)
...|.+..+++|++||||..|++|+||+|.
T Consensus 8 P~gWe~~~d~~G~~YY~n~~t~~t~We~P~ 37 (39)
T 2kyk_A 8 PPGWERRVDNMGRIYYVDHFTRTTTWQRPT 37 (39)
T ss_dssp CSSCEEEECTTSCEEEECSSSCCEECCCCC
T ss_pred CCCcEEEEcCCCCEEEEECCCCCEeccCCC
Confidence 457999999999999999999999999995
No 401
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*
Probab=98.32 E-value=2e-07 Score=71.46 Aligned_cols=32 Identities=22% Similarity=0.636 Sum_probs=29.5
Q ss_pred CCCCceeeeCCCCCcccccCCcCcccccCChh
Q 005357 557 AKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 588 (700)
Q Consensus 557 ~~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~ 588 (700)
....|.+..+++|++||||.+|++|+||+|..
T Consensus 13 LP~gWe~~~~~~G~~Yy~nh~T~~ttWe~Pr~ 44 (49)
T 2kpz_A 13 LPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRL 44 (49)
T ss_dssp CCTTEEEEECTTSCEEEEETTTTEEESSCTTC
T ss_pred CCCCcEEEECCCCCEEEEECCCCCEecCCCCC
Confidence 34689999999999999999999999999976
No 402
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.25 E-value=5.4e-07 Score=66.02 Aligned_cols=30 Identities=37% Similarity=0.750 Sum_probs=28.0
Q ss_pred CCCceeeeCCCCCcccccCCcCcccccCCh
Q 005357 558 KSSWTEHTSPDGYKYYYNCVTGVSKWEKPE 587 (700)
Q Consensus 558 ~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~ 587 (700)
...|.+.++++||+||||.+|++|+||+|.
T Consensus 9 P~gWe~~~~~~Gr~Yy~nh~t~~ttW~~P~ 38 (40)
T 2ysg_A 9 PYGWEEAYTADGIKYFINHVTQTTSWIHPV 38 (40)
T ss_dssp CTTEEEEECSSSCEEEEESSSCCEECCCCC
T ss_pred CCCcEEEEcCCCCEEEEECCCCcCcCCCCC
Confidence 467999999999999999999999999995
No 403
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=98.24 E-value=3.5e-07 Score=66.22 Aligned_cols=30 Identities=27% Similarity=0.657 Sum_probs=28.0
Q ss_pred CCCceeeeCCCCCcccccCCcCcccccCCh
Q 005357 558 KSSWTEHTSPDGYKYYYNCVTGVSKWEKPE 587 (700)
Q Consensus 558 ~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~ 587 (700)
...|.+..+.+|+.||||.+|++|+||+|.
T Consensus 8 P~gWe~~~~~~G~~Yy~nh~t~~ttW~~Pr 37 (38)
T 2law_A 8 PDGWEQAMTQDGEIYYINHKNKTTSWLDPR 37 (38)
T ss_dssp SSSCCEEEETTTEEEEEETTTTEEESSCTT
T ss_pred CCCcEEEECCCCCEEEEECCCCCEeCCCCC
Confidence 467999999999999999999999999995
No 404
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}
Probab=98.22 E-value=7.4e-07 Score=67.30 Aligned_cols=32 Identities=16% Similarity=0.632 Sum_probs=29.3
Q ss_pred CCCCceeeeCCCCCcccccCCcCcccccCChh
Q 005357 557 AKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 588 (700)
Q Consensus 557 ~~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~ 588 (700)
....|.+..+.+||+||||.+|++|+||+|..
T Consensus 11 LP~gWe~~~~~~Gr~Yyinh~t~~TtW~~Pr~ 42 (46)
T 2ez5_W 11 LPPRWSMQVAPNGRTFFIDHASRRTTWIDPRN 42 (46)
T ss_dssp CCTTEEEEECTTSSEEEEETTTTEEESBCTTT
T ss_pred CCcCcEEEEcCCCCEEEEECCCCCEeccCCCC
Confidence 34689999999999999999999999999975
No 405
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.19 E-value=1.2e-06 Score=75.96 Aligned_cols=70 Identities=14% Similarity=0.217 Sum_probs=55.1
Q ss_pred CCCceEEEeCCCCC------CcH---HHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccC
Q 005357 49 SSFAKLFVGSVPKT------ARE---EDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTL 119 (700)
Q Consensus 49 ~~~~tLfVgnLP~~------vte---edL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~ 119 (700)
.+..||+|.-++.+ .++ .+|.+.|..||+|+.++++.|+ +||+|.+.++|.+||+ |++..+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v- 82 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV- 82 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE-
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee-
Confidence 45678999988632 221 5688999999999999999884 9999999999999998 988666
Q ss_pred CCccccceeec
Q 005357 120 PGGVGPIQVRY 130 (700)
Q Consensus 120 ~g~~~~l~V~~ 130 (700)
.| +.|+|+.
T Consensus 83 ~G--r~L~V~~ 91 (95)
T 1ufw_A 83 KG--RAVKISG 91 (95)
T ss_dssp TT--EEEEEEC
T ss_pred CC--eEEEEec
Confidence 33 4466654
No 406
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.16 E-value=1.1e-06 Score=64.31 Aligned_cols=30 Identities=17% Similarity=0.457 Sum_probs=28.2
Q ss_pred CCCceeeeCCCCCcccccCCcCcccccCCh
Q 005357 558 KSSWTEHTSPDGYKYYYNCVTGVSKWEKPE 587 (700)
Q Consensus 558 ~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~ 587 (700)
...|.+..+.+|+.||||..|++|+||.|.
T Consensus 9 P~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr 38 (40)
T 2ysf_A 9 PEGWEMRFTVDGIPYFVDHNRRTTTYIDPR 38 (40)
T ss_dssp CSSEEEEECTTCCEEEEETTTCCEESSCTT
T ss_pred CcCcEEEEcCCCCEEEEECCCCcEecCCCC
Confidence 467999999999999999999999999996
No 407
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=98.13 E-value=9.8e-07 Score=64.13 Aligned_cols=30 Identities=23% Similarity=0.824 Sum_probs=26.8
Q ss_pred CCCCceeeeCCCCCcccccCCcCcccccCCh
Q 005357 557 AKSSWTEHTSPDGYKYYYNCVTGVSKWEKPE 587 (700)
Q Consensus 557 ~~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~ 587 (700)
....|.+.++++| .||||..|++|+||+|.
T Consensus 9 LP~GWe~~~~~~G-~YY~n~~t~~tqWe~P~ 38 (39)
T 2ysc_A 9 LPPGWRKIHDAAG-TYYWHVPSGSTQWQRPT 38 (39)
T ss_dssp CCTTEEEEEETTE-EEEEESSSCCEESSCCC
T ss_pred CCCCcEEEEcCCC-CEEEEcCCCCEeccCCC
Confidence 3467999999999 59999999999999994
No 408
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}
Probab=98.13 E-value=1.8e-06 Score=65.23 Aligned_cols=32 Identities=25% Similarity=0.632 Sum_probs=29.0
Q ss_pred CCCCceeeeCCCCCcccccCCcCcccccCChh
Q 005357 557 AKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 588 (700)
Q Consensus 557 ~~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~ 588 (700)
....|.+..+++|++||||.+|++|+||+|..
T Consensus 12 LP~gWe~~~~~~G~~Yyinh~t~~TtWe~Pr~ 43 (46)
T 2l4j_A 12 LPEGWEQAITPEGEIYYINHKNKTTSWLDPRL 43 (46)
T ss_dssp CCTTCEEEECTTSCEEEEETTTTEEECSCCSS
T ss_pred CCcCceeEECCCCCEEEEECCCCCEeCCCCCc
Confidence 34679999999999999999999999999963
No 409
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Probab=98.07 E-value=2.4e-06 Score=65.63 Aligned_cols=31 Identities=29% Similarity=0.671 Sum_probs=28.7
Q ss_pred CCCceeeeCCCCCcccccCCcCcccccCChh
Q 005357 558 KSSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 588 (700)
Q Consensus 558 ~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~ 588 (700)
...|.+..+.+||+||||..|++|+||+|..
T Consensus 13 P~gWe~~~~~~Gr~Yy~nh~t~~T~We~Pr~ 43 (50)
T 1i5h_W 13 PPGWEERTHTDGRVFFINHNIKKTQWEDPRM 43 (50)
T ss_dssp STTEEEEECTTSCEEEEETTTTEEESSCTTT
T ss_pred CcCcEEEEcCCCCEEEEECCCCCEEeeCCCC
Confidence 4579999999999999999999999999975
No 410
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A
Probab=98.07 E-value=1.7e-06 Score=63.96 Aligned_cols=31 Identities=13% Similarity=0.429 Sum_probs=28.6
Q ss_pred CCCceeeeCCCCCcccccCCcCcccccCChh
Q 005357 558 KSSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 588 (700)
Q Consensus 558 ~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~ 588 (700)
...|.+..+.+||.||||..|++|+||+|..
T Consensus 9 P~GWe~~~~~~G~~Yy~nh~t~~ttW~~Pr~ 39 (42)
T 2djy_A 9 PPGWEIRNTATGRVYFVDHNNRTTQFTDPRL 39 (42)
T ss_dssp CSSEEEEECSSSCEEEEETTTTEEESSCTTT
T ss_pred CcCcEEEECCCCCEEEEECCCCCEeCCCCCC
Confidence 4679999999999999999999999999964
No 411
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1
Probab=98.04 E-value=2.5e-06 Score=65.22 Aligned_cols=32 Identities=28% Similarity=0.610 Sum_probs=29.4
Q ss_pred CCCCceeeeCCCCCcccccCCcCcccccCChh
Q 005357 557 AKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 588 (700)
Q Consensus 557 ~~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~ 588 (700)
....|.+..+++||+||||.+||+|+||+|..
T Consensus 12 LP~gWe~~~~~~Gr~Yy~nh~t~~T~W~~P~~ 43 (49)
T 2ysb_A 12 LPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLE 43 (49)
T ss_dssp CCTTEEEEECSSSCEEEEETTTTEEESSCTTT
T ss_pred CCCCceEEECCCCCEEEEEcCCCCEEecCCCC
Confidence 34679999999999999999999999999976
No 412
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.01 E-value=8.7e-06 Score=72.04 Aligned_cols=72 Identities=11% Similarity=0.153 Sum_probs=65.0
Q ss_pred ccceeeccCCCccccHHHHHHHhcCC-----CceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccc
Q 005357 141 VEYKLFVGSLNKQATEKEVEEIFSPY-----GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQP 215 (700)
Q Consensus 141 ~s~~LfV~nLp~~~teedL~~~F~~f-----G~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~ 215 (700)
..++|-+-+||+.+++..|+.+++.+ |.|+.|.+..| .+-|+|+|.|..+|.+|..+|+|..| ++++
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-----H~GAivef~d~~~AgKasLaL~G~ef---~gr~ 91 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-----FNGAIIIFRDSKFAAKMLMILNGSQF---QGKV 91 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-----TTEEEEECSCHHHHHHHHHHHSSEEE---TTEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-----CCceEEEEccchhhHHHHhhcCCeee---cCeE
Confidence 35688999999999999999999999 99999999887 44699999999999999999999998 7899
Q ss_pred eEEEe
Q 005357 216 LTVRF 220 (700)
Q Consensus 216 L~V~~ 220 (700)
|+|.-
T Consensus 92 Lr~gT 96 (117)
T 2l9w_A 92 IRSGT 96 (117)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 98863
No 413
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}
Probab=98.00 E-value=3.6e-06 Score=64.33 Aligned_cols=32 Identities=19% Similarity=0.445 Sum_probs=28.9
Q ss_pred CCCCceeeeCCCCCcccccCCcCcccccCChh
Q 005357 557 AKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 588 (700)
Q Consensus 557 ~~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~ 588 (700)
....|.+..+++||+||||..||+|+||+|..
T Consensus 14 LP~GWe~~~d~~Gr~YYvnh~t~~T~We~P~~ 45 (49)
T 2zaj_A 14 LPAGWEKIEDPVYGIYYVDHINRKTQYENPSG 45 (49)
T ss_dssp CCTTEEEEEETTTEEEEEETTTTEEESSCCCS
T ss_pred CCcCceEEEcCCCCEEEEeCCCCCEecCCCCC
Confidence 34679999999999999999999999999963
No 414
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=97.98 E-value=2e-06 Score=71.86 Aligned_cols=30 Identities=33% Similarity=0.725 Sum_probs=28.4
Q ss_pred CCceeeeCCCCCcccccCCcCcccccCChh
Q 005357 559 SSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 588 (700)
Q Consensus 559 ~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~ 588 (700)
..|.++.+++||+||||.+|++|+||+|..
T Consensus 43 ~gW~~~~~~~Gr~Yy~n~~t~~t~W~~P~~ 72 (75)
T 1o6w_A 43 NGWKAAKTADGKVYYYNPTTRETSWTIPAF 72 (75)
T ss_dssp HTCEEEECTTCCEEEEETTTTEEESSCCCC
T ss_pred CeEEEEECCCCCEEEEECCCCCEECCCCCC
Confidence 579999999999999999999999999975
No 415
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=97.97 E-value=2.9e-06 Score=73.46 Aligned_cols=34 Identities=26% Similarity=0.575 Sum_probs=30.8
Q ss_pred CCCCceeeeCCCCCcccccCCcCcccccCChhhh
Q 005357 557 AKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELT 590 (700)
Q Consensus 557 ~~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~~~ 590 (700)
....|.++++++||+||||..||+|+||+|.+++
T Consensus 10 LP~gWe~~~~~~Gr~YY~n~~t~~t~W~~P~~~~ 43 (90)
T 2kxq_A 10 LPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPR 43 (90)
T ss_dssp CCSSCEEEEETTTEEEEEETTTTEEESSCSSSCS
T ss_pred CCCCcEEEECCCCCEEEEECCCCeEeeecccccc
Confidence 3467999999999999999999999999998754
No 416
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Probab=97.90 E-value=4.9e-06 Score=60.07 Aligned_cols=30 Identities=30% Similarity=0.835 Sum_probs=27.2
Q ss_pred CCCceeeeCCCCCcccccCCcCcccccCChh
Q 005357 558 KSSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 588 (700)
Q Consensus 558 ~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~ 588 (700)
...|.|..+.+| +||||..|++|+||.|..
T Consensus 5 P~GWe~~~d~~g-~YY~n~~t~~tqWe~P~~ 34 (38)
T 2ho2_A 5 PAGWMRVQDTSG-TYYWHIPTGTTQWEPPGR 34 (38)
T ss_dssp CTTEEEEECSSC-EEEEETTTTEEESSCCCC
T ss_pred CCCceEEEeCCC-CEEEecCCCCEeccCCCC
Confidence 356999999999 999999999999999963
No 417
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=97.84 E-value=6.2e-06 Score=71.06 Aligned_cols=34 Identities=21% Similarity=0.542 Sum_probs=30.6
Q ss_pred CCCCceeeeCCCCCcccccCCcCcccccCChhhh
Q 005357 557 AKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELT 590 (700)
Q Consensus 557 ~~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~~~ 590 (700)
....|.++++++||+||||..|++|+||+|.+..
T Consensus 13 LP~gWe~~~~~~Gr~Yy~n~~t~~t~W~~P~~~~ 46 (88)
T 1tk7_A 13 LPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQG 46 (88)
T ss_dssp SSSSCCEEEETTTEEEEEETTTTEEEEESCCCTT
T ss_pred CCCCcEEEECCCCCEEEEECCCCCeEeecccccc
Confidence 3467999999999999999999999999998754
No 418
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.83 E-value=1.1e-05 Score=64.20 Aligned_cols=32 Identities=19% Similarity=0.402 Sum_probs=29.3
Q ss_pred CCCCceeeeCCCCCcccccCCcCcccccCChh
Q 005357 557 AKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 588 (700)
Q Consensus 557 ~~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~ 588 (700)
....|.+..+.+||+||||..||+|+||+|..
T Consensus 14 LP~GWE~~~d~~Gr~YYvnh~tk~T~We~P~~ 45 (60)
T 2yse_A 14 LPAGWEKIEDPVYGIYYVDHINRKTQYENPVL 45 (60)
T ss_dssp CCSSEEEEECSSSCEEEEETTTTEEESSCHHH
T ss_pred CCCCcEEEECCCCCEEEEeCCCCCeeccCCCc
Confidence 34679999999999999999999999999975
No 419
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=97.78 E-value=1.7e-05 Score=62.54 Aligned_cols=33 Identities=21% Similarity=0.495 Sum_probs=29.9
Q ss_pred CCCCceeeeCCCCCcccccCCcCcccccCChhh
Q 005357 557 AKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEEL 589 (700)
Q Consensus 557 ~~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~~ 589 (700)
....|.+..+.+||+||||.+|++|+||.|...
T Consensus 15 LP~GWe~~~~~~Gr~Yyinh~tk~TtWe~Pr~~ 47 (57)
T 2ysd_A 15 LPENWEMAYTENGEVYFIDHNTKTTSWLDPRCL 47 (57)
T ss_dssp CCSSEEEEECSSCCEEEEETTTTEEESSCTTTC
T ss_pred CCcCcEEEECCCCCEEEEECCCCcEecCCCCCc
Confidence 356899999999999999999999999999753
No 420
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Probab=97.74 E-value=1.5e-05 Score=61.94 Aligned_cols=32 Identities=16% Similarity=0.431 Sum_probs=29.1
Q ss_pred CCCCceeeeCCCCCcccccCCcCcccccCChh
Q 005357 557 AKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 588 (700)
Q Consensus 557 ~~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~ 588 (700)
....|.+..+.+||+||||.+|++|+||.|..
T Consensus 19 LP~GWe~~~~~~Gr~Yyinh~tk~TtW~dPr~ 50 (53)
T 2jmf_A 19 LPPGWEIRYTAAGERFFVDHNTRRTTFEDPRP 50 (53)
T ss_dssp CCTTEEEEECTTSCEEEEETTTCCEESSCCCS
T ss_pred CCcCcEEEEcCCCCEEEEeCCCCcEecCCCCC
Confidence 34689999999999999999999999999964
No 421
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.70 E-value=0.00012 Score=64.84 Aligned_cols=65 Identities=12% Similarity=0.152 Sum_probs=59.2
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhcc-----CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhccccc
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEH-----GNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHT 118 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~-----G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~ 118 (700)
.+..++|-|-|||..++++.|+.|+++| |.|+.|.++.|.. =|+|+|+|..+|-+|.=.|++..+
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef 87 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQF 87 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeee
Confidence 4567899999999999999999999999 9999999999874 799999999999999888988665
No 422
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.61 E-value=2.1e-05 Score=60.07 Aligned_cols=31 Identities=16% Similarity=0.392 Sum_probs=28.4
Q ss_pred CCCceeeeCCCCCcccccCCcCcccccCChh
Q 005357 558 KSSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 588 (700)
Q Consensus 558 ~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~ 588 (700)
...|.+..+++|++||+|..||+|+||.|..
T Consensus 15 P~GWe~~~d~~g~~YYvnh~t~~T~We~P~~ 45 (49)
T 2dwv_A 15 PPGWERVESSEFGTYYVDHTNKRAQYRHPSG 45 (49)
T ss_dssp CTTEEEEEETTTEEEEEETTTTEEESSCCCC
T ss_pred CcCcEEEECCCCCEEEEECCCCCEeccCcCC
Confidence 3579999999999999999999999999963
No 423
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=97.57 E-value=2.6e-05 Score=67.14 Aligned_cols=30 Identities=17% Similarity=0.479 Sum_probs=28.1
Q ss_pred CCCceeeeCCCCCcccccCCcCcccccCCh
Q 005357 558 KSSWTEHTSPDGYKYYYNCVTGVSKWEKPE 587 (700)
Q Consensus 558 ~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~ 587 (700)
...|.+..+++|++||||.+|++|+||+|.
T Consensus 58 P~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr 87 (88)
T 1tk7_A 58 PPGWEIRYTAAGERFFVDHNTRRTTFEDPR 87 (88)
T ss_dssp CSSCEEEEETTTEEEEEETTTTEEESSSSC
T ss_pred CCceEEEECCCCCEEEEECCCCcEeCCCCC
Confidence 468999999999999999999999999994
No 424
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=97.57 E-value=2.7e-05 Score=59.99 Aligned_cols=30 Identities=30% Similarity=0.818 Sum_probs=27.6
Q ss_pred CCCCceeeeCCCCCcccccCCcCcccccCCh
Q 005357 557 AKSSWTEHTSPDGYKYYYNCVTGVSKWEKPE 587 (700)
Q Consensus 557 ~~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~ 587 (700)
....|.|++++.| +||||..|+.+.||+|.
T Consensus 20 LPpGW~~~~D~sG-tYY~h~~T~tTQWerP~ 49 (55)
T 2e45_A 20 LPAGWMRVQDTSG-TYYWHIPTGTTQWEPPG 49 (55)
T ss_dssp CCTTEEEEEETTE-EEEEETTTCCEESSCCC
T ss_pred CCCCCeEeecCCC-CEEEEcCCCCCccCCCC
Confidence 3467999999999 99999999999999995
No 425
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.57 E-value=0.00054 Score=60.10 Aligned_cols=89 Identities=19% Similarity=0.299 Sum_probs=68.1
Q ss_pred CCCceEEEeCCCCCCcHHHHHHHHhcc-----CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcc
Q 005357 49 SSFAKLFVGSVPKTAREEDIRPLFEEH-----GNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGV 123 (700)
Q Consensus 49 ~~~~tLfVgnLP~~vteedL~elF~~~-----G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~ 123 (700)
...++|.|.|||.+++++.|+-+|+.- |+|.+|+... +-|+|+|.+.+.|++.|+. ..+.+.+
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k--~~H~L~~-- 73 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ--ADHELHG-- 73 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC--SCCBSSS--
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC--CcceecC--
Confidence 345799999999999999999999872 5899888755 2799999999999999975 2455544
Q ss_pred ccceeecccccccccCcccceeeccCCCcccc
Q 005357 124 GPIQVRYADGERERLGAVEYKLFVGSLNKQAT 155 (700)
Q Consensus 124 ~~l~V~~a~~~~~~~~~~s~~LfV~nLp~~~t 155 (700)
..|.|.... .....+|++.+|+..++
T Consensus 74 ~~LsV~P~~------~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 74 AQLSLRPAP------PRAPARLLLQGLPPGTS 99 (104)
T ss_dssp SBCEEEECC------CCCCCCCCCCSCCCCCC
T ss_pred eEEEEEcCC------CCCcceEeeecCCCCCC
Confidence 345554322 23456899999998765
No 426
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=97.56 E-value=3e-05 Score=67.01 Aligned_cols=32 Identities=13% Similarity=0.403 Sum_probs=29.3
Q ss_pred CCCCceeeeCCCCCcccccCCcCcccccCChh
Q 005357 557 AKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 588 (700)
Q Consensus 557 ~~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~ 588 (700)
....|.+..+.+||+||||.+||+|+||.|..
T Consensus 56 LP~gWe~~~~~~G~~Yy~n~~t~~t~w~~Pr~ 87 (90)
T 2kxq_A 56 LPPGWEIRNTATGRVYFVDHNNRTTQFTDPRL 87 (90)
T ss_dssp CCSSCCEEECTTSCEEEEETTTTEEESSCTTT
T ss_pred cCCCceEEECCCCCEEEEECCCCcEecCCCCc
Confidence 35689999999999999999999999999964
No 427
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Probab=97.45 E-value=6.5e-05 Score=56.56 Aligned_cols=31 Identities=19% Similarity=0.698 Sum_probs=28.7
Q ss_pred CCCceeeeCCCCCcccccCCcCcccccCChh
Q 005357 558 KSSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 588 (700)
Q Consensus 558 ~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~ 588 (700)
...|.+..+++||.||+|.+|++|+|+.|..
T Consensus 10 P~GWe~~~~~~gr~y~~n~~t~~t~W~dPr~ 40 (46)
T 1jmq_A 10 PAGWEMAKTSSGQRYFKNHIDQTTTWQDPRK 40 (46)
T ss_dssp CTTBCCBCCSSCCCBEEETTTTEEESSCTTT
T ss_pred CcCcEEEEcCCCceEEEEecCCceeecCCCc
Confidence 4679999999999999999999999999975
No 428
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}
Probab=97.43 E-value=0.00011 Score=57.35 Aligned_cols=32 Identities=13% Similarity=0.417 Sum_probs=29.2
Q ss_pred CCCCceeeeCCCCCcccccCCcCcccccCChh
Q 005357 557 AKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 588 (700)
Q Consensus 557 ~~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~ 588 (700)
....|.+..+++|+.||+|.+|++|+||.|..
T Consensus 12 LP~GWe~~~~~~G~~Yyinh~tk~TtwedPr~ 43 (54)
T 1wmv_A 12 LPYGWEQETDENGQVFFVDHINKRTTYLDPRL 43 (54)
T ss_dssp SCTTEEEEECTTSCEEEEESSSCCEESSCTTS
T ss_pred CCcCcEEEECCCCCEEEEeCCCCCEeecCCCC
Confidence 34679999999999999999999999999975
No 429
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.17 E-value=0.0016 Score=56.24 Aligned_cols=80 Identities=14% Similarity=0.281 Sum_probs=64.0
Q ss_pred ceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCC---CCccceEEEEeCCHHHHHHHHHHhcCceeccCCcc--ceE
Q 005357 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDEL---KQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQ--PLT 217 (700)
Q Consensus 143 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~---g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr--~L~ 217 (700)
++|.|++||..+||+++.+.+..+.++....++..+. ......|+|.|.+.|++....+.++|+.+.+..|. +..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 4789999999999999999999998887777766542 23345689999999999999999999998754443 345
Q ss_pred EEecC
Q 005357 218 VRFAD 222 (700)
Q Consensus 218 V~~a~ 222 (700)
|++|-
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 67664
No 430
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.16 E-value=0.0013 Score=56.82 Aligned_cols=72 Identities=10% Similarity=0.114 Sum_probs=58.9
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCC--CcccEEEEEeCCHHHHHHHHHHhcccccCCCcc
Q 005357 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKYATSEEADRAIRALHNQHTLPGGV 123 (700)
Q Consensus 52 ~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg--~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~ 123 (700)
++|.|++||+++||+++.+.++.+.++.....+..+.+. ..-.-|||.|.+.|++....+.+++..+.+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg 75 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKG 75 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCC
Confidence 589999999999999999999999887777666644332 233679999999999999999999887766543
No 431
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.10 E-value=0.0011 Score=58.28 Aligned_cols=76 Identities=14% Similarity=0.104 Sum_probs=62.6
Q ss_pred ccceeeccCCCcccc-----HHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccc
Q 005357 141 VEYKLFVGSLNKQAT-----EKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQP 215 (700)
Q Consensus 141 ~s~~LfV~nLp~~~t-----eedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~ 215 (700)
..++|+|.||+.++- .+.++++|..|+++.....++. -.-..|.|.+.++|.+|...||+..+ .|+.
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f---~g~~ 75 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEF---LGKE 75 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEE---TTEE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhcccee---cCce
Confidence 356899999988762 2577899999999888766654 33578999999999999999999998 6889
Q ss_pred eEEEecCCC
Q 005357 216 LTVRFADPK 224 (700)
Q Consensus 216 L~V~~a~~k 224 (700)
++|-|+.+.
T Consensus 76 ~r~YFgq~~ 84 (104)
T 1wey_A 76 MKLYFAQTL 84 (104)
T ss_dssp CEEECCCCS
T ss_pred eEEEecCCC
Confidence 999999854
No 432
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.05 E-value=0.0021 Score=55.82 Aligned_cols=54 Identities=28% Similarity=0.513 Sum_probs=45.5
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 005357 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALH 114 (700)
Q Consensus 52 ~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~ 114 (700)
..++| ++|.++...||.++|+.||- ..|+.+.|- .|||.|.+++.|..|++.+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 44555 99999999999999999994 456666664 79999999999999999763
No 433
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.01 E-value=0.0023 Score=56.19 Aligned_cols=80 Identities=15% Similarity=0.089 Sum_probs=62.1
Q ss_pred cccceeeccCCCccccHHHHHHHhcC-----CCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCcc
Q 005357 140 AVEYKLFVGSLNKQATEKEVEEIFSP-----YGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQ 214 (700)
Q Consensus 140 ~~s~~LfV~nLp~~~teedL~~~F~~-----fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr 214 (700)
...++|.|.|||++++++.|+-+|++ -|+|++|.... +-|+|+|.+.++|++.++.-.. .+ ++.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k~~H-~L---~~~ 74 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQADH-EL---HGA 74 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTCSCC-BS---SSS
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcCCcc-ee---cCe
Confidence 34578999999999999999999987 25688887653 4789999999999998875232 33 568
Q ss_pred ceEEEecCCCCCCCCC
Q 005357 215 PLTVRFADPKRPRPGD 230 (700)
Q Consensus 215 ~L~V~~a~~k~~r~~~ 230 (700)
.|.|.-..++..++-.
T Consensus 75 ~LsV~P~~~~~~~r~l 90 (104)
T 2dhx_A 75 QLSLRPAPPRAPARLL 90 (104)
T ss_dssp BCEEEECCCCCCCCCC
T ss_pred EEEEEcCCCCCcceEe
Confidence 8999887777655443
No 434
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...
Probab=96.63 E-value=0.00071 Score=65.02 Aligned_cols=32 Identities=34% Similarity=0.810 Sum_probs=26.9
Q ss_pred CCCceeeeC-CCCCcccccCCcCcccccCChhh
Q 005357 558 KSSWTEHTS-PDGYKYYYNCVTGVSKWEKPEEL 589 (700)
Q Consensus 558 ~~~w~e~~~-~~g~~yyyn~~t~~s~w~kp~~~ 589 (700)
...|.+..+ .+|+.||||..|++|+||.|..-
T Consensus 11 P~gWe~~~~~~~g~~yy~n~~t~~t~We~P~~~ 43 (166)
T 3tc5_A 11 PPGWEKAMSRSSGRVYYFNHITNASQWERPSGN 43 (166)
T ss_dssp CTTEEEEECTTTCCEEEEETTTCCEESSCC---
T ss_pred CCCceEEEcCCCCCEEEEECCCCCEEecCCCCC
Confidence 457999999 58999999999999999999763
No 435
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.33 E-value=0.005 Score=53.59 Aligned_cols=54 Identities=22% Similarity=0.438 Sum_probs=45.3
Q ss_pred eEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 005357 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALH 114 (700)
Q Consensus 53 tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~ 114 (700)
.||+-++|.++...||.++|+.|| -..|+.+.|- .|||.|.+++.|..|++.+.
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEEeCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 344449999999999999999999 4566666664 79999999999999999763
No 436
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.31 E-value=0.0063 Score=53.55 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=58.6
Q ss_pred CceEEEeCCCCCC-c----HHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCCCcccc
Q 005357 51 FAKLFVGSVPKTA-R----EEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGP 125 (700)
Q Consensus 51 ~~tLfVgnLP~~v-t----eedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~ 125 (700)
..+|+|.||+.++ + ++.++++|..|+++......+.-+ -..|.|.+.++|.+|...||+..+. |+ +
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~-g~--~ 75 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFL-GK--E 75 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEET-TE--E
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceec-Cc--e
Confidence 4689999998765 2 357899999999999988888654 5789999999999999999886663 33 4
Q ss_pred ceeeccc
Q 005357 126 IQVRYAD 132 (700)
Q Consensus 126 l~V~~a~ 132 (700)
++|-++.
T Consensus 76 ~r~YFgq 82 (104)
T 1wey_A 76 MKLYFAQ 82 (104)
T ss_dssp CEEECCC
T ss_pred eEEEecC
Confidence 7777765
No 437
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.29 E-value=0.0066 Score=52.82 Aligned_cols=81 Identities=16% Similarity=0.253 Sum_probs=59.5
Q ss_pred cceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCC---CCccceEEEEeCCHHHHHHHHHHhcCceeccCCcc--ce
Q 005357 142 EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDEL---KQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQ--PL 216 (700)
Q Consensus 142 s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~---g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr--~L 216 (700)
+-+|.|++||..+||+++.+.+..+-++....++..+. ...-..|+|.|.+.|+.....+..+|+.+++.+|. +.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 56899999999999999999888765554433333221 12235689999999999999999999998764443 44
Q ss_pred EEEecC
Q 005357 217 TVRFAD 222 (700)
Q Consensus 217 ~V~~a~ 222 (700)
.|++|-
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 566663
No 438
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.02 E-value=0.018 Score=51.91 Aligned_cols=64 Identities=16% Similarity=0.214 Sum_probs=50.3
Q ss_pred CCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccccCC
Q 005357 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLP 120 (700)
Q Consensus 48 ~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~~~ 120 (700)
....+-|.|-+++... .+.|.+.|++||+|++...... ...-.|.|++..+|++||.+ |+ .++.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~k-NG-~ii~ 84 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALSK-DG-RIFG 84 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHTT-TT-CEET
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHHh-CC-eEec
Confidence 4457889999999885 5667788999999999887322 24999999999999999985 44 4443
No 439
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.95 E-value=0.013 Score=50.79 Aligned_cols=55 Identities=22% Similarity=0.424 Sum_probs=44.5
Q ss_pred cceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhc
Q 005357 142 EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALN 204 (700)
Q Consensus 142 s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Ln 204 (700)
+..++| ++|.++...||.++|+.||.| .|+.+.| ..|||.|.+.+.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET------TEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 345666 999999999999999999954 3444444 379999999999999999764
No 440
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.77 E-value=0.0082 Score=52.20 Aligned_cols=74 Identities=5% Similarity=0.004 Sum_probs=53.5
Q ss_pred CCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCC-C-CcccEEEEEeCCHHHHHHHHHHhcccccCCCcc
Q 005357 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKT-G-QQQGCCFIKYATSEEADRAIRALHNQHTLPGGV 123 (700)
Q Consensus 50 ~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~T-g-~skG~aFVeF~~~edA~~Ai~~L~g~~~~~g~~ 123 (700)
.+-+|.|+.||+.+||+++.+.++.+=++.....+.-+.+ + ..-.-|||.|.+.|++....+.+++..+++.+.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg 83 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKG 83 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTC
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCC
Confidence 4568999999999999999888877644433222222211 1 122568999999999999999998877766553
No 441
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}
Probab=95.67 E-value=0.0051 Score=54.51 Aligned_cols=31 Identities=13% Similarity=0.395 Sum_probs=28.5
Q ss_pred CCCceeeeCCCCCcccccCCcCcccccCChh
Q 005357 558 KSSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 588 (700)
Q Consensus 558 ~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~ 588 (700)
...|.+..+++|++||.|..|++++|+.|..
T Consensus 74 P~GWE~r~d~~Gr~YfIdH~tktTtW~dPRl 104 (109)
T 3l4h_A 74 PRGWEIKTDQQGKSFFVDHNSRATTFIDPRI 104 (109)
T ss_dssp CTTEEEEECTTCCEEEEETTTTEEESSCSCC
T ss_pred CCCCeEEECCCCCEEEEeCCCCCEeeCCCCc
Confidence 4679999999999999999999999999953
No 442
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.65 E-value=0.037 Score=49.90 Aligned_cols=73 Identities=12% Similarity=0.079 Sum_probs=55.9
Q ss_pred ccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEe
Q 005357 141 VEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220 (700)
Q Consensus 141 ~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~ 220 (700)
..+.|.|.+++.. ..+.|.++|++||+|.+..... ....-.|+|+++.+|++|+. .||..+- ++..|-|..
T Consensus 23 ~~~wVtVFGFp~~-~~~~VL~~F~~~G~Iv~~~~~~-----~~NWihI~Y~s~~~A~rAL~-kNG~ii~--g~~mIGV~p 93 (119)
T 1wwh_A 23 DDTWVTVFGFPQA-SASYILLQFAQYGNILKHVMSN-----TGNWMHIRYQSKLQARKALS-KDGRIFG--ESIMIGVKP 93 (119)
T ss_dssp GGGEEEEECCCGG-GHHHHHHHHHTTSCEEEEEECS-----SSSEEEEEESSHHHHHHHHT-TTTCEET--TTEECEEEE
T ss_pred CCCEEEEECCCHH-HHHHHHHHHHhhCcEEEeccCC-----CCCeEEEEeCCHHHHHHHHH-hCCeEec--CCEEEEEEE
Confidence 4567889999987 4678899999999999887621 24578999999999999998 5888771 234555666
Q ss_pred cC
Q 005357 221 AD 222 (700)
Q Consensus 221 a~ 222 (700)
..
T Consensus 94 ~~ 95 (119)
T 1wwh_A 94 CI 95 (119)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 443
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.07 E-value=0.02 Score=49.84 Aligned_cols=54 Identities=22% Similarity=0.377 Sum_probs=44.1
Q ss_pred ceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhc
Q 005357 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALN 204 (700)
Q Consensus 143 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Ln 204 (700)
..++| ++|.++...||.++|+.||. ..|..+.| ..|||.|.+.+.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidD------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEET------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 34555 99999999999999999994 34555544 379999999999999999774
No 444
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.83 E-value=0.03 Score=61.97 Aligned_cols=57 Identities=7% Similarity=0.153 Sum_probs=43.7
Q ss_pred CCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 005357 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112 (700)
Q Consensus 50 ~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~ 112 (700)
..|.|||. .+.++++++|.++|+.||+|.++.+-+++. -|+.|||.+.+++..+++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHHhc
Confidence 46789998 799999999999999999999998876542 5999999999999977654
No 445
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}
Probab=93.62 E-value=0.048 Score=52.64 Aligned_cols=36 Identities=25% Similarity=0.412 Sum_probs=29.7
Q ss_pred CCCceeeeCCC-CCcccccCCcCcccccCChhhhHHH
Q 005357 558 KSSWTEHTSPD-GYKYYYNCVTGVSKWEKPEELTLFE 593 (700)
Q Consensus 558 ~~~w~e~~~~~-g~~yyyn~~t~~s~w~kp~~~~~~~ 593 (700)
...|.+-.+.. |+.||||.+|++++|++|..+.+.+
T Consensus 9 p~~w~~~~s~s~~~~Yy~~~~~~~~~~~~~~~vs~~e 45 (177)
T 1yw5_A 9 PPNWTIRVSRSHNKEYFLNQSTNESSWDPPYGTDKEV 45 (177)
T ss_dssp CTTEEEEECSSTTCEEEEETTTCCEESSCCTTCCHHH
T ss_pred CchHHHHhcccCCchhhhhHHHhhHhhcCcccCCHHH
Confidence 46799887764 9999999999999999997655443
No 446
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.78 E-value=0.024 Score=62.76 Aligned_cols=58 Identities=9% Similarity=0.228 Sum_probs=42.8
Q ss_pred CcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHH
Q 005357 139 GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAIN 201 (700)
Q Consensus 139 ~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~ 201 (700)
....+.|||. .+..+++++|.++|+.||.|.++.+.++ ..-|+.|||++.+++.++++
T Consensus 50 ~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~----~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 50 EQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES----FGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS----SSEEEEEECC---CCHHHHS
T ss_pred HHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc----CCeEEEEEeCCHHHHHHHHh
Confidence 4446789997 6888999999999999999999987654 23699999999999887754
No 447
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A
Probab=92.10 E-value=0.075 Score=54.53 Aligned_cols=36 Identities=28% Similarity=0.685 Sum_probs=31.2
Q ss_pred CCCceeeeCCCCCcccccCCcCcccccCChhhhHHH
Q 005357 558 KSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFE 593 (700)
Q Consensus 558 ~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~~~~~~ 593 (700)
...|.+..++||++||-|..|+.++|+-|.-....+
T Consensus 13 ~~~we~~~~~~~~~y~~~h~~~tt~w~~p~~~~~~~ 48 (261)
T 1eg3_A 13 QGPWERAISPNKVPYYINHETQTTCWDHPKMTELYQ 48 (261)
T ss_dssp CTTEEEEECTTSCEEEEETTTTEEESSCHHHHHHHH
T ss_pred CCCcceeECCCCCeEeecCCcccccCCCCchhhhhc
Confidence 457999999999999999999999999999644433
No 448
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=90.97 E-value=0.21 Score=45.63 Aligned_cols=77 Identities=17% Similarity=0.189 Sum_probs=53.3
Q ss_pred cceeeccCCCccccHHHHHHHhcCCCceeE-EEEeeCC---------CC-----CccceEEEEeCCHHHHHHHHHHhcCc
Q 005357 142 EYKLFVGSLNKQATEKEVEEIFSPYGRVED-VYLMRDE---------LK-----QSRGCGFVKYSHRDMALAAINALNGI 206 (700)
Q Consensus 142 s~~LfV~nLp~~~teedL~~~F~~fG~V~~-v~I~~d~---------~g-----~srG~aFVeF~~~e~A~~Ai~~Lng~ 206 (700)
+..|.|.+.+.+. ...|.+.|++||.|.+ +.+.++. .. ...+...|+|++..+|.+|+. .||.
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 4567788887654 5678889999999766 3222100 00 124567899999999999998 6888
Q ss_pred eeccCCccceEEEecCC
Q 005357 207 YTMRGCDQPLTVRFADP 223 (700)
Q Consensus 207 ~~~~g~gr~L~V~~a~~ 223 (700)
.+ +|..|-|...+.
T Consensus 85 ii---~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VF---NGVLLGVIPYTK 98 (132)
T ss_dssp EE---TTEECEEEECCH
T ss_pred Ee---CcEEEEEEECCH
Confidence 77 566777777654
No 449
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=88.87 E-value=0.15 Score=56.04 Aligned_cols=31 Identities=19% Similarity=0.507 Sum_probs=28.4
Q ss_pred CCCceeeeCCCCCcccccCCcCcccccCChh
Q 005357 558 KSSWTEHTSPDGYKYYYNCVTGVSKWEKPEE 588 (700)
Q Consensus 558 ~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~ 588 (700)
...|.+..+++|++||.|..|+.|+|+.|..
T Consensus 10 P~gWe~~~~~~g~~y~i~h~~~~t~w~~Pr~ 40 (429)
T 3olm_A 10 PSGWEMRLTNTARVYFVDHNTKTTTWDDPRL 40 (429)
T ss_dssp CTTCCCCCSSCCCCCEEETTTTEEESSCTTS
T ss_pred CCCceeEECCCCCeEEEeCCCcceeccCCCC
Confidence 4579999999999999999999999999964
No 450
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=88.67 E-value=0.32 Score=44.46 Aligned_cols=68 Identities=18% Similarity=0.251 Sum_probs=43.8
Q ss_pred CceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeec---------CCCC-----CcccEEEEEeCCHHHHHHHHHHhccc
Q 005357 51 FAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKD---------KKTG-----QQQGCCFIKYATSEEADRAIRALHNQ 116 (700)
Q Consensus 51 ~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d---------~~Tg-----~skG~aFVeF~~~edA~~Ai~~L~g~ 116 (700)
...|.|-+.|.+.+. .|.+.|++||.|.+-.-+.+ +++. .......|.|++..+|.+||.+ |+
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG- 83 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NG- 83 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TT-
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CC-
Confidence 456778788766554 56677999999877221111 0001 1346789999999999999985 44
Q ss_pred ccCCC
Q 005357 117 HTLPG 121 (700)
Q Consensus 117 ~~~~g 121 (700)
.++.|
T Consensus 84 ~ii~G 88 (132)
T 3p3d_A 84 AVFNG 88 (132)
T ss_dssp CEETT
T ss_pred eEeCc
Confidence 44444
No 451
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=83.26 E-value=2.5 Score=47.25 Aligned_cols=54 Identities=28% Similarity=0.497 Sum_probs=44.5
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 005357 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALH 114 (700)
Q Consensus 52 ~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~ 114 (700)
..++|+ ++..+...||.++|+.||. .+|+.+.|. .|||.|.+.+.|+.++++++
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 456665 8889999999999999995 456555553 79999999999999999884
No 452
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=79.16 E-value=12 Score=33.73 Aligned_cols=124 Identities=13% Similarity=0.176 Sum_probs=67.7
Q ss_pred ceEEEeCCC-CCCcHHHHHHHHhccC-CeeEEEEeecCCCCCcccE-EEEEeCCHHHHHHHHHHhcccccCCCcccccee
Q 005357 52 AKLFVGSVP-KTAREEDIRPLFEEHG-NVIEVALIKDKKTGQQQGC-CFIKYATSEEADRAIRALHNQHTLPGGVGPIQV 128 (700)
Q Consensus 52 ~tLfVgnLP-~~vteedL~elF~~~G-~V~~i~i~~d~~Tg~skG~-aFVeF~~~edA~~Ai~~L~g~~~~~g~~~~l~V 128 (700)
++|.| .++ ..-.-.+|.++|.+.| .|..+.+.... ..|+ .|+ +.+.+.|+++++.+ +... ..
T Consensus 7 ~~i~v-~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~----~~~~~~~~-~~d~~~a~~~L~~~-G~~v--------~~ 71 (144)
T 2f06_A 7 KQLSI-FLENKSGRLTEVTEVLAKENINLSALCIAENA----DFGILRGI-VSDPDKAYKALKDN-HFAV--------NI 71 (144)
T ss_dssp EEEEE-EECSSSSHHHHHHHHHHHTTCCEEEEEEEECS----SCEEEEEE-ESCHHHHHHHHHHT-TCCE--------EE
T ss_pred EEEEE-EecCCCcHHHHHHHHHHHCCCCEEEEEEEecC----CCCEEEEE-eCCHHHHHHHHHHc-CCeE--------ee
Confidence 45555 333 2334567888888877 56665543221 1132 344 67777777777753 2110 00
Q ss_pred ecccccccccCcccceeeccCCCcc-ccHHHHHHHhcCCC-ceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCc
Q 005357 129 RYADGERERLGAVEYKLFVGSLNKQ-ATEKEVEEIFSPYG-RVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGI 206 (700)
Q Consensus 129 ~~a~~~~~~~~~~s~~LfV~nLp~~-~teedL~~~F~~fG-~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~ 206 (700)
..++.-++++. -.-.++.+.+.+.| .|+.+.... . ..+..+.|++++.+.|.+++++ .|.
T Consensus 72 --------------~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~-~--~~~~~~~i~~~d~~~A~~~L~~-~g~ 133 (144)
T 2f06_A 72 --------------TDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA-N--NNVANVVIRPSNMDKCIEVLKE-KKV 133 (144)
T ss_dssp --------------EEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE-E--TTEEEEEEEESCHHHHHHHHHH-TTC
T ss_pred --------------eeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc-c--CCcEEEEEEeCCHHHHHHHHHH-cCC
Confidence 01222233332 23456677776666 466655542 1 1356778899999999888876 454
Q ss_pred ee
Q 005357 207 YT 208 (700)
Q Consensus 207 ~~ 208 (700)
.+
T Consensus 134 ~v 135 (144)
T 2f06_A 134 DL 135 (144)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 453
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=70.90 E-value=21 Score=30.22 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=50.0
Q ss_pred CCCCCceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc
Q 005357 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHN 115 (700)
Q Consensus 47 ~~~~~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g 115 (700)
....+|-|-|-|+|..+-+.++.-.....|--..|..+. |-|.|.|.+.++-+.||..|-+
T Consensus 8 sikqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 8 SIKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp --CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEE
T ss_pred hhhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHh
Confidence 456678999999999999999998888888766676543 5799999999999999988743
No 454
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=70.73 E-value=30 Score=30.67 Aligned_cols=106 Identities=14% Similarity=0.224 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHhcccccCCCccccceeecccccccccCcccceeeccCCCccccHHH---HHHHhcCCCceeEEEEeeC
Q 005357 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKE---VEEIFSPYGRVEDVYLMRD 177 (700)
Q Consensus 101 ~~~edA~~Ai~~L~g~~~~~g~~~~l~V~~a~~~~~~~~~~s~~LfV~nLp~~~teed---L~~~F~~fG~V~~v~I~~d 177 (700)
+|.|.-++|++++-.......+ .|.+. .+...-.|.|.++|+.+..+- -+.+-..|..-....|+
T Consensus 11 ddlea~ekalkemirqarkfag----tvtyt------l~gn~l~i~itgvpeqvrkelakeaerl~~efni~v~y~im-- 78 (170)
T 4hhu_A 11 DDLEALEKALKEMIRQARKFAG----TVTYT------LSGNRLVIVITGVPEQVRKELAKEAERLKAEFNINVQYQIM-- 78 (170)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTC----EEEEE------EETTEEEEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEE--
T ss_pred CcHHHHHHHHHHHHHHHHhhcc----eEEEE------EeCCEEEEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEE--
Confidence 5788889999876432211111 11111 122234678889998775432 12222334332333444
Q ss_pred CCCCccceEEEEe--CCHHHHHHHHHHh-------cCceeccCCccceEEEe
Q 005357 178 ELKQSRGCGFVKY--SHRDMALAAINAL-------NGIYTMRGCDQPLTVRF 220 (700)
Q Consensus 178 ~~g~srG~aFVeF--~~~e~A~~Ai~~L-------ng~~~~~g~gr~L~V~~ 220 (700)
|...|+--|.| +|.|+-++|++++ .|...+.-+|..|.+.+
T Consensus 79 --gsgsgvm~i~f~gddlea~ekalkemirqarkfagtvtytl~gn~l~i~i 128 (170)
T 4hhu_A 79 --GSGSGVMVIVFEGDDLEALEKALKEMIRQARKFAGTVTYTLSGNRLVIVI 128 (170)
T ss_dssp --CTTCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEEEECSSEEEEEE
T ss_pred --eCCceEEEEEEecCcHHHHHHHHHHHHHHHHhhcceEEEEEeCCEEEEEE
Confidence 33456777888 7889888888754 45444333555565554
No 455
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=66.89 E-value=6.9 Score=43.71 Aligned_cols=56 Identities=21% Similarity=0.377 Sum_probs=43.6
Q ss_pred cceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcC
Q 005357 142 EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNG 205 (700)
Q Consensus 142 s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng 205 (700)
+..++|+ ++..+...+|.++|+.||.| +|+.+.+ ..|||.|.+.+.|..+++.++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC------CeEEEEECCHHHHHHHHHHHHh
Confidence 3455555 88888889999999999954 4444433 4799999999999999998854
No 456
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=66.02 E-value=11 Score=30.24 Aligned_cols=59 Identities=8% Similarity=0.152 Sum_probs=38.0
Q ss_pred cccHHHHHHHhcCCC-----ceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEecC
Q 005357 153 QATEKEVEEIFSPYG-----RVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222 (700)
Q Consensus 153 ~~teedL~~~F~~fG-----~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~ 222 (700)
.++..+|..++..-+ .|-.|+|..+ |.||+-.... +.++++.|++..+ +++.++|+.++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~-------~s~v~v~~~~-~~~~~~~l~~~~i---~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN-------ASYVEILNGK-GPHVLKVMKNTTV---KGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS-------CEEEEECTTC-HHHHHHHHTTCCC------CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC-------cEEEEECHHH-HHHHHHHhccccC---cCceEEEEECC
Confidence 456667666665443 3666777655 8899987654 7778888988776 78899888764
No 457
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=58.70 E-value=25 Score=29.66 Aligned_cols=32 Identities=13% Similarity=0.335 Sum_probs=23.9
Q ss_pred CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 005357 77 NVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113 (700)
Q Consensus 77 ~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L 113 (700)
.|.+|.+.. ...||.||+++..++...+|+..
T Consensus 39 ~i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t 70 (92)
T 3lpe_A 39 DVYSILASE-----SLKGYVLVEAETKGDVEELIKGM 70 (92)
T ss_dssp CEEEEEECT-----TSTTEEEEEESSHHHHHHHHTTC
T ss_pred cEEEEEEec-----ccCCEEEEEEecchhHHHHHHCC
Confidence 356665543 37899999999999888887654
No 458
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=52.15 E-value=1.2e+02 Score=26.48 Aligned_cols=120 Identities=13% Similarity=0.098 Sum_probs=79.5
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeC----CHHHHHHHHHHhcccccCCCccccce
Q 005357 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYA----TSEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 52 ~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~----~~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
.++.|.++.-..-...|+..+...-.|.++.+-.. .+.+.|.|. +.++..++++.+ +...
T Consensus 8 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~-G~~~--------- 71 (151)
T 1p6t_A 8 IAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLA------TETVNVIYDPAETGTAAIQEKIEKL-GYHV--------- 71 (151)
T ss_dssp EEEEEESCCSSHHHHHHHHHHTTSSSEEEEEEEGG------GTEEEEEECTTTSCHHHHHHHHHHH-TCEE---------
T ss_pred EEEEECCCcCHHHHHHHHHHHhcCCCeeEEEEEcc------CCEEEEEEcCCcCCHHHHHHHHHHc-CCcc---------
Confidence 45778887766556678888888777777765433 235677775 344455555543 2111
Q ss_pred eecccccccccCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeC----CHHHHHHHHHHh
Q 005357 128 VRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYS----HRDMALAAINAL 203 (700)
Q Consensus 128 V~~a~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~----~~e~A~~Ai~~L 203 (700)
. .....+.|.++.-......|++.+.+...|..+.+-.. .+.+.|+|+ +.++..++++.+
T Consensus 72 -~----------~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~~ 135 (151)
T 1p6t_A 72 -V----------TEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFA-----LETVTVEYNPKEASVSDLKEAVDKL 135 (151)
T ss_dssp -C----------CEEEEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETT-----TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred -c----------ccccEEEecCCCCHHHHHHHHHHHhcCCCceEEEEEcc-----CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 0 01236888888888888999999999888888776543 346888886 456666677654
No 459
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=52.11 E-value=1.2e+02 Score=26.36 Aligned_cols=128 Identities=13% Similarity=0.119 Sum_probs=81.7
Q ss_pred ceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCC----HHHHHHHHHHhcccccCCCccccce
Q 005357 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYAT----SEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 52 ~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~----~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
.++.|.++.-.--...|++.++..--|.++.+-... +-+.|.|.. .++..++++.+ +... .
T Consensus 6 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~-G~~~--------~ 70 (149)
T 2ew9_A 6 CFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMA------GKAEIKYDPEVIQPLEIAQFIQDL-GFEA--------A 70 (149)
T ss_dssp EEEEEECCCSSSHHHHHHHHHHTTSSCCCEEEETTT------TEEEEEECTTTCCHHHHHHHHHHH-TCEE--------E
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCcEEEEEEecC------CEEEEEEcCCCCCHHHHHHHHhcC-CCce--------E
Confidence 467888888766667788888887667666653322 356777743 44556666654 3211 1
Q ss_pred eecccccccccCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeC----CHHHHHHHHHHh
Q 005357 128 VRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYS----HRDMALAAINAL 203 (700)
Q Consensus 128 V~~a~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~----~~e~A~~Ai~~L 203 (700)
+..... ......++.|.++.-......|++.+.+...|..+.+-.. .+.+.|+|+ +.++..++++.+
T Consensus 71 ~~~~~~----~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~~ 141 (149)
T 2ew9_A 71 VMEDYA----GSDGNIELTITGMTCASCVHNIESKLTRTNGITYASVALA-----TSKALVKFDPEIIGPRDIIKIIEEI 141 (149)
T ss_dssp ECSCSC----CSSSEEEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETT-----TTEEEEECCTTTSCHHHHHHHHHHH
T ss_pred eecccc----cccceeEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcC-----CCEEEEEECCCCCCHHHHHHHHHhC
Confidence 000000 0112346888899888888889999998888888877554 346788886 356666677654
No 460
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=51.34 E-value=62 Score=27.32 Aligned_cols=56 Identities=14% Similarity=0.126 Sum_probs=45.0
Q ss_pred cceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhc
Q 005357 142 EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALN 204 (700)
Q Consensus 142 s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Ln 204 (700)
.|-|.|-|+|..+...++.-..+..|---.|+.+ .|-|.|+|.+.++-.-|+.+|-
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyi-------dgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-------DGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-------SSCEEEEESSHHHHHHHHHHHE
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-------cCeeEEEecCChHHHHHHHHHH
Confidence 4668888999999888888777777766666654 3589999999999999998764
No 461
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=50.29 E-value=97 Score=29.50 Aligned_cols=122 Identities=11% Similarity=0.074 Sum_probs=64.4
Q ss_pred ceEEEeCCC----CCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeC---CHHHHHHHHHHhcccccCCCccc
Q 005357 52 AKLFVGSVP----KTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYA---TSEEADRAIRALHNQHTLPGGVG 124 (700)
Q Consensus 52 ~tLfVgnLP----~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~---~~edA~~Ai~~L~g~~~~~g~~~ 124 (700)
..+++++|. ..+...||+++|+..| ..+|+-... + |= |.|+ +.++.+..|+..-...+ |...
T Consensus 7 yiaLLRGINVGG~nkv~MadLr~~l~~lG-f~~V~TyI~--S----GN--vvF~s~~~~~~l~~~ie~~l~~~f--g~~v 75 (183)
T 2hiy_A 7 YALLVRGINVGGKNKVVMAELRQELTNLG-LEKVESYIN--S----GN--IFFTSIDSKAQLVEKLETFFAVHY--PFIQ 75 (183)
T ss_dssp EEEECSSCSCC-CCCCCHHHHHHHHHHHT-CEEEEEETT--T----TE--EEEEECSCHHHHHHHHHHHHHHHC--TTCC
T ss_pred hhhhccceecCCCCcccHHHHHHHHHHcC-CccceEEEe--c----CC--EEEecCCCHHHHHHHHHHHHHHhc--CCCC
Confidence 346667763 4588999999999998 355554433 1 22 3343 43444545544311122 2223
Q ss_pred cceeeccccc-------ccccCcccceeeccCCCccccHHHHHHHhcCCC-ceeEEEEeeCCCCCccceEEE-EeC
Q 005357 125 PIQVRYADGE-------RERLGAVEYKLFVGSLNKQATEKEVEEIFSPYG-RVEDVYLMRDELKQSRGCGFV-KYS 191 (700)
Q Consensus 125 ~l~V~~a~~~-------~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG-~V~~v~I~~d~~g~srG~aFV-eF~ 191 (700)
.+-|+..+.- .........+++|.=+....+.++|.+.+..+. ..+.+.+.. +..|+ .|.
T Consensus 76 ~v~vrs~~el~~i~~~~Pf~~~~~~~~~~v~F~~~~~~~~~~~~~l~~~~~~~E~~~~~~-------~~iy~~~~~ 144 (183)
T 2hiy_A 76 SFSLLSLEDFEAELENLPAWWSRDLARKDFLFYTEGLDVDQVIATVESLELKDEVLYFGK-------LGIFWGKFS 144 (183)
T ss_dssp CCEEEEHHHHHHHHTTCCGGGGSCCSEEEEEEECTTCCHHHHHHHHHTSCCCSEEEEECS-------SEEEEEECC
T ss_pred CEEEecHHHHHHHHHhCCCCccCCCcEEEEEEECCCCChHHHHHHhhccCCCCeEEEEEC-------CEEEEEEeC
Confidence 3333333211 000111345677777777788888777555432 446666543 36677 774
No 462
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=49.85 E-value=5.7 Score=42.96 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=5.3
Q ss_pred HHHHHHHhcCCCCCCC
Q 005357 487 QLQQQLQLMQPSNQNL 502 (700)
Q Consensus 487 q~~~q~~~~q~~~q~~ 502 (700)
++|+++.+.|+++|++
T Consensus 379 ~~~~~~~~~~~~~~~~ 394 (449)
T 3iot_A 379 KAFESLKSFQQQQQQQ 394 (449)
T ss_dssp HHHHHHHHTC------
T ss_pred HHHHHHHhhccccccc
Confidence 4455555554444443
No 463
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=46.18 E-value=33 Score=26.59 Aligned_cols=55 Identities=11% Similarity=0.018 Sum_probs=42.6
Q ss_pred cceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHH
Q 005357 142 EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINA 202 (700)
Q Consensus 142 s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~ 202 (700)
..++.|.++.-......|++.+.+ ..|..+.+-.. .+.+.|+|++.++..++|+.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~-----~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN-----EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS-----EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc-----CCEEEEEECCHHHHHHHHHH
Confidence 346889999888889999999999 88988887543 45678888866666667764
No 464
>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D domain swapping, heme binding, MI processing, heme, iron, metal-binding, nucleus; 1.70A {Homo sapiens}
Probab=43.94 E-value=14 Score=29.97 Aligned_cols=34 Identities=21% Similarity=0.396 Sum_probs=30.6
Q ss_pred CCCCceeeeCCCCCcccccCCcCcccccCChhhh
Q 005357 557 AKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELT 590 (700)
Q Consensus 557 ~~~~w~e~~~~~g~~yyyn~~t~~s~w~kp~~~~ 590 (700)
....|..-+-..|-.-||+..|+.-+|.||-.|-
T Consensus 29 LPeGW~~v~H~SGmP~YlH~~trV~T~SrPY~lG 62 (79)
T 3le4_A 29 LPDGWIMTFHNSGVPVYLHRESRVVTWSRPYFLG 62 (79)
T ss_dssp CCTTEEEEECTTSSEEEEETTTTEEESSCCCCCT
T ss_pred CCCccEEEEecCCceEEEeccceEEeccCCeEec
Confidence 3468999999999999999999999999998764
No 465
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=43.73 E-value=5 Score=43.43 Aligned_cols=8 Identities=0% Similarity=0.173 Sum_probs=4.0
Q ss_pred CceEEEeC
Q 005357 51 FAKLFVGS 58 (700)
Q Consensus 51 ~~tLfVgn 58 (700)
.-+||..+
T Consensus 6 tltvw~~~ 13 (449)
T 3iot_A 6 KLVIWING 13 (449)
T ss_dssp SEEEECCT
T ss_pred eEEEEeCC
Confidence 34566443
No 466
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=42.10 E-value=76 Score=27.48 Aligned_cols=48 Identities=13% Similarity=0.094 Sum_probs=31.3
Q ss_pred CCCcHHHHHHHHhcc-C---C-eeEEEEeecCCCCCcccEEEEEeCCHHHHHHH
Q 005357 61 KTAREEDIRPLFEEH-G---N-VIEVALIKDKKTGQQQGCCFIKYATSEEADRA 109 (700)
Q Consensus 61 ~~vteedL~elF~~~-G---~-V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~A 109 (700)
.+.+..||++.+.+. + . |.-..+......|++.|||.| |+|.+.|++.
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 80 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMATI 80 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 678889998877643 3 2 222333334444788899887 8888877653
No 467
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=41.96 E-value=16 Score=33.82 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=30.6
Q ss_pred CCCcHHHHHHHHhc-cCCeeEEEEe----ecCCCCCcccEEEEEeCCHHHHHHH
Q 005357 61 KTAREEDIRPLFEE-HGNVIEVALI----KDKKTGQQQGCCFIKYATSEEADRA 109 (700)
Q Consensus 61 ~~vteedL~elF~~-~G~V~~i~i~----~d~~Tg~skG~aFVeF~~~edA~~A 109 (700)
.+++..||++.+.. |+.-.++.++ .....|++.|||.| |+|.|.|++.
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 56888899988765 4432222222 23333688899887 7888877754
No 468
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=40.62 E-value=43 Score=29.34 Aligned_cols=48 Identities=8% Similarity=0.018 Sum_probs=30.3
Q ss_pred CCCcHHHHHHHHhc-cCC---eeEE-EEeecCCCCCcccEEEEEeCCHHHHHHH
Q 005357 61 KTAREEDIRPLFEE-HGN---VIEV-ALIKDKKTGQQQGCCFIKYATSEEADRA 109 (700)
Q Consensus 61 ~~vteedL~elF~~-~G~---V~~i-~i~~d~~Tg~skG~aFVeF~~~edA~~A 109 (700)
.+.+..||++.+.. |+. ++.| .+......|++.|||.| |+|.+.|++.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 46788888887754 332 2222 22233334788899987 7888887754
No 469
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=40.10 E-value=92 Score=26.90 Aligned_cols=49 Identities=10% Similarity=0.240 Sum_probs=31.5
Q ss_pred CCCcHHHHHHHHhcc-C---CeeE-EEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 005357 61 KTAREEDIRPLFEEH-G---NVIE-VALIKDKKTGQQQGCCFIKYATSEEADRAI 110 (700)
Q Consensus 61 ~~vteedL~elF~~~-G---~V~~-i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai 110 (700)
.+.+..||++.+.+. + .++. ..+......|++.|||.| |+|.+.|++.-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 677889998877643 3 2222 233334444788888876 78888777653
No 470
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=39.77 E-value=27 Score=33.26 Aligned_cols=56 Identities=13% Similarity=0.214 Sum_probs=37.5
Q ss_pred eEEEeCCCCC---------CcHHHHHHHH--hccCCeeEEEEeecCCCCCcccEEEEEeCCH-HHHHHHHH
Q 005357 53 KLFVGSVPKT---------AREEDIRPLF--EEHGNVIEVALIKDKKTGQQQGCCFIKYATS-EEADRAIR 111 (700)
Q Consensus 53 tLfVgnLP~~---------vteedL~elF--~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~-edA~~Ai~ 111 (700)
+++|-|++.+ .+..+|++.| ..|.++. |+.+.++. ..+|++.|+|.+. ..-..|++
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~--Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL--GHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS--BEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC--CCceeEEEEecCChHHHHHHHH
Confidence 4667777752 3447899977 9998855 56666543 4788999999863 33444554
No 471
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=39.06 E-value=85 Score=23.87 Aligned_cols=56 Identities=13% Similarity=0.032 Sum_probs=42.8
Q ss_pred ceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeC----CHHHHHHHHHHh
Q 005357 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYS----HRDMALAAINAL 203 (700)
Q Consensus 143 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~----~~e~A~~Ai~~L 203 (700)
.++.|.++.-......|++.+.+...|..+.+-.. .+.+.|+|+ +.++..++++.+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL-----QNRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG-----GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec-----CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 46788888888888999999999888988887554 456789885 456666777653
No 472
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=37.72 E-value=69 Score=25.41 Aligned_cols=57 Identities=11% Similarity=0.285 Sum_probs=34.3
Q ss_pred eEEEeCCC-CCCcHHHHHHHHhccC-----CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhccccc
Q 005357 53 KLFVGSVP-KTAREEDIRPLFEEHG-----NVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHT 118 (700)
Q Consensus 53 tLfVgnLP-~~vteedL~elF~~~G-----~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~~ 118 (700)
+|||..=- ..++..+|..+++.-+ .|-.|+|..+ |.||+.... .|+++++.|++..+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~-~~~~~~~~l~~~~i 64 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNG-KGPHVLKVMKNTTV 64 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTT-CHHHHHHHHTTCCC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHH-HHHHHHHHhccccC
Confidence 56664222 3467778888887554 3566777544 889887654 46678888865443
No 473
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=35.42 E-value=1.2e+02 Score=21.69 Aligned_cols=54 Identities=13% Similarity=0.163 Sum_probs=38.7
Q ss_pred eeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCC---HHHHHHHHHH
Q 005357 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSH---RDMALAAINA 202 (700)
Q Consensus 144 ~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~---~e~A~~Ai~~ 202 (700)
++.|.++.-......|++.+.+...|..+.+-.. .+...|+|+. .+...++++.
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~i~~~i~~ 60 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVE-----KKSVVVEFDAPATQDLIKEALLD 60 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETT-----TTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcC-----CCEEEEEECCCCCHHHHHHHHHH
Confidence 5678888877778889999999888888877543 4467788863 4445555554
No 474
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=32.83 E-value=19 Score=31.07 Aligned_cols=48 Identities=25% Similarity=0.374 Sum_probs=28.4
Q ss_pred CCCcHHHHHHHHhc-cCCeeEEEEeecCCC----CCcccEEEEEeCCHHHHHHH
Q 005357 61 KTAREEDIRPLFEE-HGNVIEVALIKDKKT----GQQQGCCFIKYATSEEADRA 109 (700)
Q Consensus 61 ~~vteedL~elF~~-~G~V~~i~i~~d~~T----g~skG~aFVeF~~~edA~~A 109 (700)
.+.+..||++.+.+ |+.-.++.++..-.| |++.|||.| |+|.+.|++.
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk~ 81 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAMLY 81 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 46788888887654 333233334443333 577788876 6666665543
No 475
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=32.56 E-value=1.4e+02 Score=27.22 Aligned_cols=48 Identities=17% Similarity=0.324 Sum_probs=31.1
Q ss_pred CCCcHHHHHHHHhc-cCC---eeEE-EEeecCCCCCcccEEEEEeCCHHHHHHH
Q 005357 61 KTAREEDIRPLFEE-HGN---VIEV-ALIKDKKTGQQQGCCFIKYATSEEADRA 109 (700)
Q Consensus 61 ~~vteedL~elF~~-~G~---V~~i-~i~~d~~Tg~skG~aFVeF~~~edA~~A 109 (700)
.+++..||++.+.. |+. ++.| .+......|++.|||.| |+|.|.|++.
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk~ 85 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKKF 85 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHhc
Confidence 46889999998854 442 2222 23333444788899887 7888877653
No 476
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=32.06 E-value=2.3e+02 Score=27.66 Aligned_cols=22 Identities=9% Similarity=0.084 Sum_probs=18.2
Q ss_pred cEEEEEeCCHHHHHHHHHHhcc
Q 005357 94 GCCFIKYATSEEADRAIRALHN 115 (700)
Q Consensus 94 G~aFVeF~~~edA~~Ai~~L~g 115 (700)
.+.+|.+++.+.++.|.+.|-.
T Consensus 101 ~~~~V~~d~~~~g~~~~~~l~~ 122 (305)
T 3g1w_A 101 AHSFLGTNNYNAGMNAAYKMAE 122 (305)
T ss_dssp CSCEEECCHHHHHHHHHHHHHH
T ss_pred eeEEECcCHHHHHHHHHHHHHH
Confidence 4789999999999998887743
No 477
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=31.94 E-value=1.4e+02 Score=21.79 Aligned_cols=54 Identities=13% Similarity=0.128 Sum_probs=38.1
Q ss_pred eeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCC---HHHHHHHHHH
Q 005357 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSH---RDMALAAINA 202 (700)
Q Consensus 144 ~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~---~e~A~~Ai~~ 202 (700)
++.|.++.-......|++.+.+...|..+.+-.. .+.+.|+|++ .+...++++.
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~i~~~i~~ 62 (71)
T 2xmw_A 6 NLQLEGMRCAACASSIERAIAKVPGVQSCQVNFA-----LEQAVVSYHGETTPQILTDAVER 62 (71)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT-----TTEEEEEEC---CHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCeEEEEEEcc-----CCEEEEEECCCCCHHHHHHHHHH
Confidence 5778888777777889999999888888877544 3467888874 3344445554
No 478
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=31.77 E-value=3.2e+02 Score=25.41 Aligned_cols=117 Identities=9% Similarity=0.086 Sum_probs=55.4
Q ss_pred eEEEeCCCCCCcHHHHHHHHhccC-CeeEEEEeecCCCCCcccEEEEEeC-C---HHHHHHHHHHhcccccCCCccccce
Q 005357 53 KLFVGSVPKTAREEDIRPLFEEHG-NVIEVALIKDKKTGQQQGCCFIKYA-T---SEEADRAIRALHNQHTLPGGVGPIQ 127 (700)
Q Consensus 53 tLfVgnLP~~vteedL~elF~~~G-~V~~i~i~~d~~Tg~skG~aFVeF~-~---~edA~~Ai~~L~g~~~~~g~~~~l~ 127 (700)
.|.|-.-+..---..|..+|..+| .|.++++.... +.. +..+.|. + .+..+++++.+-. .+ ...+.
T Consensus 8 ~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~--~~f--~~~~~v~~~~~~~~~l~~~L~~~~~-~~----~~~~~ 78 (192)
T 1u8s_A 8 VITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFG--KEF--TLLMLISGSPSNITRVETTLPLLGQ-QH----DLITM 78 (192)
T ss_dssp EEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEET--TEE--EEEEEEEECHHHHHHHHHHHHHHHH-HH----TCEEE
T ss_pred EEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecC--Cce--EEEEEEecCCCCHHHHHHHHHHHHH-hc----CCEEE
Confidence 355554444444566777777776 78888876632 211 1112222 2 2223333332211 10 11122
Q ss_pred eecccccccccCcccceeeccCCCccccHHHHHHHhcCCC-ceeEEEEeeCC
Q 005357 128 VRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYG-RVEDVYLMRDE 178 (700)
Q Consensus 128 V~~a~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG-~V~~v~I~~d~ 178 (700)
+................|.|...+..---.+|-++|..+| .|+++....+.
T Consensus 79 ~~~~~~~~~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~ 130 (192)
T 1u8s_A 79 MKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTIS 130 (192)
T ss_dssp EEEECCCCCCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred EEeCCCCCCccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhccc
Confidence 2221111111122334566655444444566777777665 68888877653
No 479
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=30.44 E-value=78 Score=27.49 Aligned_cols=33 Identities=12% Similarity=0.248 Sum_probs=26.0
Q ss_pred CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 005357 77 NVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALH 114 (700)
Q Consensus 77 ~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~ 114 (700)
.|.+|.... ..|||-|||=.+..++++|++.+.
T Consensus 40 ~I~Si~~~~-----~lkGyIyVEA~~~~~V~~ai~gi~ 72 (106)
T 3h7h_B 40 QIKSVVAPE-----HVKGYIYVEAYKQTHVKQAIEGVG 72 (106)
T ss_dssp CCCEEEECT-----TCCSEEEEEESSHHHHHHHHTTCG
T ss_pred ceEEEEecC-----CCceEEEEEeCCHHHHHHHHhccc
Confidence 466765533 258999999999999999998763
No 480
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=30.43 E-value=1.5e+02 Score=21.59 Aligned_cols=56 Identities=16% Similarity=0.083 Sum_probs=40.2
Q ss_pred ceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCC----HHHHHHHHHHh
Q 005357 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSH----RDMALAAINAL 203 (700)
Q Consensus 143 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~----~e~A~~Ai~~L 203 (700)
.++.|.++.-......|++.+.+...|..+.+-.. .+.+.|+|+. .+...++++.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1osd_A 5 VTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFE-----TRQAVVTFDDAKTSVQKLTKATADA 64 (72)
T ss_dssp EEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETT-----TTEEEEEEETTTCCHHHHHHHHHHT
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEec-----CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 35778888877778889999999888888877544 3567788863 44555556543
No 481
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=30.29 E-value=6.6 Score=45.74 Aligned_cols=91 Identities=18% Similarity=0.120 Sum_probs=0.0
Q ss_pred hcccCCccccCCCCcccccccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCC
Q 005357 380 QLQIPGQTSFSQALPSQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTNQQQLPAPVQQQLHQPYQQS 459 (700)
Q Consensus 380 ~~~~~~~~~~~~~~~~qq~~~~~~~~~~~q~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~qqq~~~~~q~~ 459 (700)
++.+...++.+|+...|+..++-++++.+++++||.+ ..||+.....+++..++.+.+
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~q~~~qqq----------------------~~~q~~~~~~~~~~~~~~~~~ 109 (727)
T 4b8c_D 52 HLAAVSAQSLGQPNIYARQNAMKKYLATQQAQQAQQQ----------------------AQQQAQQQVPGPFGPGPQAAP 109 (727)
T ss_dssp HHHHHHHHSTTSTTHHHHHHHHHHHC------------------------------------------------------
T ss_pred HHHhhchhccccchHHHHHHHHHHHHhhhchhhHHHH----------------------HHhhccCcccCccccCcccCc
Q ss_pred chhhhhhcchhhh--hhhhhccCcHHHHHHHHHHH
Q 005357 460 PSQLAQMLSQQTQ--TLQATFQSSQQAFSQLQQQL 492 (700)
Q Consensus 460 ~~~~~q~~~qq~q--~~~~~~~s~~~~~~q~~~q~ 492 (700)
..+..++..++++ ...+...+..+++-++...+
T Consensus 110 ~~~~~~~~~~~~~~~~s~s~~~~~~~~l~~~~~~~ 144 (727)
T 4b8c_D 110 PALQPTDFQQSHIAEASKSLVDCTKQALMEMADTL 144 (727)
T ss_dssp ----------------------CCCHHHHHHHHHH
T ss_pred cchhhhhhccccccchhhhccccchhhhhhhhhhc
No 482
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=29.38 E-value=81 Score=27.20 Aligned_cols=67 Identities=9% Similarity=0.100 Sum_probs=45.8
Q ss_pred CCCccccHHHHHHHh-cCCCceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHHhcCceeccCCccceEEEecCCCCC
Q 005357 149 SLNKQATEKEVEEIF-SPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226 (700)
Q Consensus 149 nLp~~~teedL~~~F-~~fG~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~Lng~~~~~g~gr~L~V~~a~~k~~ 226 (700)
.++..+.-+||.... +.||.-.+++.... ...|-..+-||.++||+.|+-... -+.|+|-+..++..
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~-------EllIpl~sQeDLDkaIellDrss~----~kSLrIlL~~~~~~ 90 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN-------ELVIPLTTQDDLDKAVELLDRSIH----MKSLKILLVINGST 90 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEECSS-------SSCEECCSHHHHHHHHHHHHHCSS----CCSEEEEEEECCCC
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEecc-------eEEEeccCHHHHHHHHHHHccCCc----ccceEEEEecCCCC
Confidence 345667777766544 44777666666532 467999999999999999876643 46677766666543
No 483
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=29.37 E-value=3.8e+02 Score=26.80 Aligned_cols=97 Identities=15% Similarity=0.074 Sum_probs=52.9
Q ss_pred CCCceEEEeCCCCC------------CcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhccc
Q 005357 49 SSFAKLFVGSVPKT------------AREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQ 116 (700)
Q Consensus 49 ~~~~tLfVgnLP~~------------vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~ 116 (700)
.-...|.|+|..+. .+.+.|.++|+.+|- +|.+..|. +.++.+++|+++...
T Consensus 20 ~rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~LgF--~V~~~~dl--------------t~~em~~~l~~~~~~ 83 (277)
T 1nw9_B 20 PCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHF--MVEVKGDL--------------TAKKMVLALLELARQ 83 (277)
T ss_dssp SCEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTE--EEEEEESC--------------CHHHHHHHHHHHHHS
T ss_pred cccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHHCCC--EEEEEcCC--------------CHHHHHHHHHHHHHh
Confidence 34567889988653 367889999999983 45555553 566777777776432
Q ss_pred ccCCCccccceeecccccccccCcccceeeccCCCc-cccHHHHHHHhc
Q 005357 117 HTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNK-QATEKEVEEIFS 164 (700)
Q Consensus 117 ~~~~g~~~~l~V~~a~~~~~~~~~~s~~LfV~nLp~-~~teedL~~~F~ 164 (700)
.. ......+.+-.+.+...........||- .+. .+..++|.++|.
T Consensus 84 ~h-~~~D~~vv~ilSHG~~~~~~~~~g~iy~--~D~~~v~l~~i~~~f~ 129 (277)
T 1nw9_B 84 DH-GALDCCVVVILSHGCQASHLQFPGAVYG--TDGCPVSVEKIVNIFN 129 (277)
T ss_dssp CC-TTCSEEEEEEEEEEECCCCSSSCCEEEC--TTSCEEEHHHHHHTTC
T ss_pred hc-ccCCeEEEEEeCCCCccccccCCCcEEe--cCCceeeHHHHHHHhc
Confidence 11 1111122222222221110011134552 232 467788999886
No 484
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=29.23 E-value=2.5e+02 Score=26.81 Aligned_cols=58 Identities=14% Similarity=0.109 Sum_probs=33.0
Q ss_pred eEEEeCCCCCCcHHHHHHHHhccC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc
Q 005357 53 KLFVGSVPKTAREEDIRPLFEEHG-NVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHN 115 (700)
Q Consensus 53 tLfVgnLP~~vteedL~elF~~~G-~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g 115 (700)
-|+|.....+..++.++++.+ .| +|+.+ +........+++|.+++.+.++.+.+.|..
T Consensus 62 gii~~~~~~~~~~~~~~~~~~-~~ipvV~~----~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~ 120 (276)
T 3ksm_A 62 ALILAPNSAEDLTPSVAQYRA-RNIPVLVV----DSDLAGDAHQGLVATDNYAAGQLAARALLA 120 (276)
T ss_dssp EEEECCSSTTTTHHHHHHHHH-TTCCEEEE----SSCCSSSCSSEEEECCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHH-CCCcEEEE----ecCCCCCCcceEEccCHHHHHHHHHHHHHH
Confidence 455555444455555555443 34 33332 221112223589999999999999887743
No 485
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=29.12 E-value=3.5e+02 Score=27.22 Aligned_cols=91 Identities=15% Similarity=0.169 Sum_probs=53.1
Q ss_pred CCCceEEEeCCCCC------------CcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhccc
Q 005357 49 SSFAKLFVGSVPKT------------AREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQ 116 (700)
Q Consensus 49 ~~~~tLfVgnLP~~------------vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~ 116 (700)
.-...|.|+|..+. .+.+.|.++|+..|- +|.+..|. +.++.+++|+++...
T Consensus 20 ~rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF--~V~~~~dl--------------t~~em~~~l~~~~~~ 83 (278)
T 3od5_A 20 RRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGF--EVKCFNDL--------------KAEELLLKIHEVSTV 83 (278)
T ss_dssp BCCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTC--EEEEEESC--------------CHHHHHHHHHHHHHS
T ss_pred CcCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCC--EEEEecCC--------------CHHHHHHHHHHHHhh
Confidence 34457999997654 567889999999984 45555553 566777777766332
Q ss_pred ccCCCccccceeecccccccccCcccceeeccCCCccccHHHHHHHhcC
Q 005357 117 HTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSP 165 (700)
Q Consensus 117 ~~~~g~~~~l~V~~a~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~ 165 (700)
.. ......+.+-.+.+.. ..|| +.+..+..++|.++|..
T Consensus 84 ~h-~~~d~~vv~ilSHG~~-------g~i~--g~D~~v~l~~I~~~f~~ 122 (278)
T 3od5_A 84 SH-ADADCFVCVFLSHGEG-------NHIY--AYDAKIEIQTLTGLFKG 122 (278)
T ss_dssp CC-TTBSCEEEEEESCEET-------TEEE--CSSSEEEHHHHHHTTST
T ss_pred cc-cCCCEEEEEEECCCCC-------CEEE--EeCCeEEHHHHHHHhcc
Confidence 11 1122222222222221 2333 33444788899999964
No 486
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=29.04 E-value=1.6e+02 Score=21.15 Aligned_cols=53 Identities=19% Similarity=0.204 Sum_probs=37.4
Q ss_pred eeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCC----HHHHHHHHH
Q 005357 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSH----RDMALAAIN 201 (700)
Q Consensus 144 ~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~----~e~A~~Ai~ 201 (700)
++.|.++.-......|++.+.+...|..+.+-.. .+.+.|+|+. .+...++++
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~ 59 (68)
T 1cpz_A 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLK-----KEKAVVKFDEANVQATEICQAIN 59 (68)
T ss_dssp EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETT-----TTEEEEEECTTTCCHHHHHHHHH
T ss_pred EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEec-----CCEEEEEECCCCCCHHHHHHHHH
Confidence 4677788777777889999998888888877544 3567788864 344444444
No 487
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=28.49 E-value=3.1e+02 Score=28.08 Aligned_cols=49 Identities=14% Similarity=0.173 Sum_probs=34.9
Q ss_pred CceEEEeCCCC---------CCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcc
Q 005357 51 FAKLFVGSVPK---------TAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHN 115 (700)
Q Consensus 51 ~~tLfVgnLP~---------~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g 115 (700)
...|.|+|..+ +.+.+.|.++|+.+|- +|.+..|. +.++.+++|+++..
T Consensus 61 r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF--~V~~~~dl--------------t~~em~~~l~~f~~ 118 (302)
T 3e4c_A 61 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGY--SVDVKKNL--------------TASDMTTELEAFAH 118 (302)
T ss_dssp CEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTC--EEEEEESC--------------CHHHHHHHHHHHHT
T ss_pred cEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCC--EEEEeeCC--------------CHHHHHHHHHHHHh
Confidence 45799999854 3467789999999984 45555553 67788888887643
No 488
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=28.47 E-value=76 Score=23.71 Aligned_cols=55 Identities=11% Similarity=0.126 Sum_probs=40.6
Q ss_pred ceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCC---HHHHHHHHHH
Q 005357 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSH---RDMALAAINA 202 (700)
Q Consensus 143 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~---~e~A~~Ai~~ 202 (700)
.++.|.++.-......|++.+.+...|..+.+-.. .+.+.|+|.+ .++..++++.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFA-----LEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETT-----TTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec-----CCEEEEEECCCCCHHHHHHHHHH
Confidence 46788888888888999999999988988887554 3467788843 4455555553
No 489
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.95 E-value=60 Score=27.25 Aligned_cols=55 Identities=15% Similarity=0.201 Sum_probs=36.0
Q ss_pred eccCCCccccHHHHHHHhcC-CC-ceeEEEEeeCCCCCccceEEEEeCCHHHHHHHHHH
Q 005357 146 FVGSLNKQATEKEVEEIFSP-YG-RVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINA 202 (700)
Q Consensus 146 fV~nLp~~~teedL~~~F~~-fG-~V~~v~I~~d~~g~srG~aFVeF~~~e~A~~Ai~~ 202 (700)
|+...+...+..+|++.+++ |+ .|..|..+....+ +--|||++..-.+|......
T Consensus 26 ~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~--~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 26 LTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRG--EKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTS--CEEEEEEECTTSCHHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCC--ceEEEEEcCCCCcHHHHHHh
Confidence 33445567788888887776 55 4777776654433 33589999887776665443
No 490
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=27.61 E-value=3e+02 Score=26.06 Aligned_cols=89 Identities=16% Similarity=0.162 Sum_probs=50.9
Q ss_pred CCceEEEeCCCCC------------CcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhcccc
Q 005357 50 SFAKLFVGSVPKT------------AREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQH 117 (700)
Q Consensus 50 ~~~tLfVgnLP~~------------vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L~g~~ 117 (700)
-...|.|.|..++ ++.+.|+++|+.+|- +|.+..|. +.++..+.|+++....
T Consensus 44 rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF--~V~~~~dl--------------t~~em~~~l~~~~~~d 107 (179)
T 3p45_A 44 RGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGF--EVKCFNDL--------------KAEELLLKIHEVSTVS 107 (179)
T ss_dssp CCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTC--EEEEEESC--------------CHHHHHHHHHHHHTSC
T ss_pred cCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCC--EEEEEeCC--------------CHHHHHHHHHHHhhhh
Confidence 3457888887654 477889999999984 44554553 5666777777663321
Q ss_pred cCCCccccceeecccccccccCcccceeeccCCCccccHHHHHHHhc
Q 005357 118 TLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFS 164 (700)
Q Consensus 118 ~~~g~~~~l~V~~a~~~~~~~~~~s~~LfV~nLp~~~teedL~~~F~ 164 (700)
. ......+.+-.+... ...||-. +..+..++|.++|.
T Consensus 108 h-~~~dc~vvvilSHG~-------~g~I~g~--D~~v~l~~I~~~F~ 144 (179)
T 3p45_A 108 H-ADADCFVCVFLSHGE-------GNHIYAY--DAKIEIQTLTGLFK 144 (179)
T ss_dssp C-TTBSCEEEEEESCEE-------TTEEECS--SSEEEHHHHHGGGS
T ss_pred c-CCCCEEEEEEeccCC-------CCEEEEE--CCEEEHHHHHHhcc
Confidence 1 111222222233222 1234433 33377788998886
No 491
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=27.57 E-value=1.1e+02 Score=23.38 Aligned_cols=56 Identities=9% Similarity=-0.012 Sum_probs=42.5
Q ss_pred CceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 005357 51 FAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113 (700)
Q Consensus 51 ~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~~edA~~Ai~~L 113 (700)
..++.|.++.-..=...|++.++. ..|..+.+-.. .+-+.|+|.+.++..++|+.+
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHc
Confidence 467899999877778889999998 77888777432 346788888666777777764
No 492
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=26.97 E-value=3.8e+02 Score=24.78 Aligned_cols=142 Identities=14% Similarity=0.128 Sum_probs=82.5
Q ss_pred CceEEEeCCCCCCcHHHHHHHHhccCCeeEEEEeecCCCCCcccEEEEEeCC----HHHHHHHHHHhc-c-ccc--CCCc
Q 005357 51 FAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYAT----SEEADRAIRALH-N-QHT--LPGG 122 (700)
Q Consensus 51 ~~tLfVgnLP~~vteedL~elF~~~G~V~~i~i~~d~~Tg~skG~aFVeF~~----~edA~~Ai~~L~-g-~~~--~~g~ 122 (700)
..+|.|.++.-..-...|++.+...--|.++.+-... +-+.|.|.. .++..++++.+. + ... ....
T Consensus 21 ~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~~~gg~~v~~~~~~ 94 (202)
T 2rop_A 21 TLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLEN------KTAQVKYDPSCTSPVALQRAIEALPPGNFKVSLPDGA 94 (202)
T ss_dssp EEEEEEESGGGSTHHHHHHHHTTSBTTEEEEEEETTT------TEEEEEECTTTCCHHHHHHHHTTSSSSCSEEEC----
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHhccCCeEEEecccc
Confidence 3468888887666667799999888778877764332 367888864 344555555431 0 000 0000
Q ss_pred -----cc-cceeecccc---cccccCcccceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCC-
Q 005357 123 -----VG-PIQVRYADG---ERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSH- 192 (700)
Q Consensus 123 -----~~-~l~V~~a~~---~~~~~~~~s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~- 192 (700)
.. ......... ..........+|.|.++.-......|++.+.+.-.|..+.+-.. .+.+.|+|+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~-----~~~~~v~~~~~ 169 (202)
T 2rop_A 95 EGSGTDHRSSSSHSPGSPPRNQVQGTCSTTLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLA-----EGTATVLYNPA 169 (202)
T ss_dssp -------------------------CCEEEEEEESCCCSTHHHHHHHHHGGGSSSEEEEEEETT-----TTEEEEEECTT
T ss_pred ccccccccccccccccccccccccccceEEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEcc-----CCEEEEEECCC
Confidence 00 000000000 00000112356889999888888999999999988988887554 4578888853
Q ss_pred ---HHHHHHHHHHh
Q 005357 193 ---RDMALAAINAL 203 (700)
Q Consensus 193 ---~e~A~~Ai~~L 203 (700)
.++..++++.+
T Consensus 170 ~~~~~~i~~~i~~~ 183 (202)
T 2rop_A 170 VISPEELRAAIEDM 183 (202)
T ss_dssp TCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHc
Confidence 45556666654
No 493
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=26.59 E-value=1.7e+02 Score=21.40 Aligned_cols=55 Identities=18% Similarity=0.120 Sum_probs=39.3
Q ss_pred ceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCC----HHHHHHHHHH
Q 005357 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSH----RDMALAAINA 202 (700)
Q Consensus 143 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~----~e~A~~Ai~~ 202 (700)
.++.|.++.-......|++.+.+...|..+.+-.. .+.+.|+|+. .+...++++.
T Consensus 7 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~ 65 (71)
T 2l3m_A 7 LTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLA-----EGTVEVTIDSSVVTLKDIVAVIED 65 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT-----TTEEEEEEETTTSCHHHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEec-----CCEEEEEECCCCCCHHHHHHHHHH
Confidence 35778888877777889999998888888877543 4567788863 4445555554
No 494
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=26.55 E-value=2.2e+02 Score=21.98 Aligned_cols=57 Identities=14% Similarity=0.152 Sum_probs=41.5
Q ss_pred cceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCC----HHHHHHHHHHh
Q 005357 142 EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSH----RDMALAAINAL 203 (700)
Q Consensus 142 s~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~----~e~A~~Ai~~L 203 (700)
..++.|.++.-......|++.+.+...|..+.+-.. .+.+.|+|+. .+...++++.+
T Consensus 10 ~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~~ 70 (84)
T 1q8l_A 10 VLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLD-----NQEATIVYQPHLISVEEMKKQIEAM 70 (84)
T ss_dssp EEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECST-----TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEec-----CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 346788888887788889999999888888877543 3567888853 45556666653
No 495
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=25.65 E-value=2e+02 Score=21.12 Aligned_cols=45 Identities=11% Similarity=0.137 Sum_probs=34.9
Q ss_pred ceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCC
Q 005357 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSH 192 (700)
Q Consensus 143 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~ 192 (700)
.++.|.++.-......|++.+.+...|..+.+-.. .+.+.|+|+.
T Consensus 6 ~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~ 50 (75)
T 1yjr_A 6 LELVVRGMTCASCVHKIESSLTKHRGILYCSVALA-----TNKAHIKYDP 50 (75)
T ss_dssp EEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETT-----TTEEEEEECT
T ss_pred EEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEec-----CCEEEEEECC
Confidence 46778888877778889999999888888877544 3567888864
No 496
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=25.02 E-value=2.1e+02 Score=21.16 Aligned_cols=56 Identities=18% Similarity=0.190 Sum_probs=39.4
Q ss_pred ceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCC--HHHHHHHHHHh
Q 005357 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSH--RDMALAAINAL 203 (700)
Q Consensus 143 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~--~e~A~~Ai~~L 203 (700)
.++.|.++.-......|++.+.+...|..+.+-.. .+.+.|+|+. .+...++++.+
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~-----~~~~~v~~~~~~~~~i~~~i~~~ 62 (73)
T 1mwy_A 5 YSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFA-----TEKLVVDADNDIRAQVESALQKA 62 (73)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETT-----TTEEEEEESSCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEec-----CCEEEEEECCCCHHHHHHHHHHc
Confidence 35778888777777889999998888888877544 3567788875 33444555543
No 497
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=24.34 E-value=2.2e+02 Score=21.09 Aligned_cols=55 Identities=11% Similarity=0.138 Sum_probs=39.7
Q ss_pred eeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCC----HHHHHHHHHHh
Q 005357 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSH----RDMALAAINAL 203 (700)
Q Consensus 144 ~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~----~e~A~~Ai~~L 203 (700)
++.|.++.-......|++.+.+...|..+.+-.. .+.+.|+|+. .+...++++.+
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (75)
T 3cjk_B 5 TISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE-----EKNATIIYDPKLQTPKTLQEAIDDM 63 (75)
T ss_dssp EEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETT-----TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEec-----CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 5778888777777889999999888888877544 3567888864 45555666553
No 498
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=24.33 E-value=1.4e+02 Score=24.00 Aligned_cols=56 Identities=14% Similarity=0.243 Sum_probs=41.4
Q ss_pred ceeeccCCCccccHHHHHHHhcCCCceeEEEEeeCCCCCccceEEEEeCC----HHHHHHHHHHh
Q 005357 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSH----RDMALAAINAL 203 (700)
Q Consensus 143 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~I~~d~~g~srG~aFVeF~~----~e~A~~Ai~~L 203 (700)
.+|.|.++.-......|++.+.+.-.|..+.+-.. .+.+.|+|+. .++..++++.+
T Consensus 5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~-----~~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLE-----NRSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETT-----TTEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEcc-----CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 46778888887788889999999888988887654 4578888863 44555666544
No 499
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=24.09 E-value=1.2e+02 Score=33.71 Aligned_cols=61 Identities=11% Similarity=0.208 Sum_probs=33.0
Q ss_pred CceEEEeCCCCCCcHHHHHHHHhcc---CCeeEEEEeecCCCCCcccEEEE-EeCCHHHHHHHHHHh
Q 005357 51 FAKLFVGSVPKTAREEDIRPLFEEH---GNVIEVALIKDKKTGQQQGCCFI-KYATSEEADRAIRAL 113 (700)
Q Consensus 51 ~~tLfVgnLP~~vteedL~elF~~~---G~V~~i~i~~d~~Tg~skG~aFV-eF~~~edA~~Ai~~L 113 (700)
..+|.|.-||+.++.++|.+..... +.|..|.-++|..+ ..|.-|| +++...+++..++.|
T Consensus 275 ~~~IvITElPy~v~k~~lie~I~~lv~~kki~~I~dirDesd--~~gvrivIelk~~~~~e~vl~~L 339 (514)
T 2inr_A 275 RKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETD--RTGLRIAIELKKDVNSESIKNYL 339 (514)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHHHHTSCC---CEEECCB--TTBCCEEEEC------CHHHHHH
T ss_pred ccEEEEEecCceeeHHHHHHHHHHHHhcCCcCccchhhhcCC--CCceEEEEEECCCcCHHHHHHHH
Confidence 4689999999999998877755432 44544554555432 2234444 566655666666655
No 500
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=23.73 E-value=1e+02 Score=33.79 Aligned_cols=63 Identities=17% Similarity=0.298 Sum_probs=38.0
Q ss_pred CCceEEEeCCCCCCcHHHHHHHHhc---cCCeeEEEEeecCCCCCcccEEE-EEeCCHHHHHHHHHHh
Q 005357 50 SFAKLFVGSVPKTAREEDIRPLFEE---HGNVIEVALIKDKKTGQQQGCCF-IKYATSEEADRAIRAL 113 (700)
Q Consensus 50 ~~~tLfVgnLP~~vteedL~elF~~---~G~V~~i~i~~d~~Tg~skG~aF-VeF~~~edA~~Ai~~L 113 (700)
...+|.|.-||+.++.++|.+.+.. -+.|..|.-++|..|. ..|+-| |+++...+++..++.|
T Consensus 235 ~~~~ivItElPy~v~~~~lie~i~~l~~~kki~~I~d~rDe~sd-~~gvrivI~lk~~~~~~~~l~~L 301 (470)
T 3ilw_A 235 GRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSD-RVGLRIVIEIKRDAVAKVVINNL 301 (470)
T ss_dssp CCEEEEEEECCTTCCHHHHHHHHHHHHHTTSCTTEEEEEECCBT-TTBCCEEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEEeCCCccCHHHHHHHHHHHHhcCCCCccccccccCCC-CCceEEEEEECCCCCHHHHHHHH
Confidence 4568999999999999887776543 2444445545555222 123444 4565555566555554
Done!