Query 005360
Match_columns 700
No_of_seqs 507 out of 2636
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 22:13:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005360.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005360hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02631 ferric-chelate reduct 100.0 2E-151 4E-156 1293.7 67.6 693 1-700 1-699 (699)
2 PLN02292 ferric-chelate reduct 100.0 2E-145 4E-150 1246.7 64.3 680 1-700 8-702 (702)
3 PLN02844 oxidoreductase/ferric 100.0 1E-127 2E-132 1103.3 66.6 674 3-700 5-722 (722)
4 KOG0039 Ferric reductase, NADH 100.0 6.4E-68 1.4E-72 610.7 45.2 484 4-496 36-554 (646)
5 COG4097 Predicted ferric reduc 100.0 5.1E-39 1.1E-43 331.9 31.7 317 154-490 38-378 (438)
6 cd06186 NOX_Duox_like_FAD_NADP 100.0 2.6E-29 5.7E-34 253.6 22.5 154 317-472 2-161 (210)
7 cd06184 flavohem_like_fad_nad_ 99.9 2.1E-26 4.7E-31 238.3 24.8 172 309-496 4-182 (247)
8 cd06189 flavin_oxioreductase N 99.9 1.2E-26 2.7E-31 236.6 20.2 201 315-533 2-204 (224)
9 cd06212 monooxygenase_like The 99.9 7.3E-26 1.6E-30 232.1 22.7 167 313-496 2-172 (232)
10 cd06191 FNR_iron_sulfur_bindin 99.9 7.9E-26 1.7E-30 231.7 22.2 166 315-496 2-171 (231)
11 cd06216 FNR_iron_sulfur_bindin 99.9 1.2E-25 2.5E-30 232.3 20.6 215 301-533 2-224 (243)
12 cd06215 FNR_iron_sulfur_bindin 99.9 1.2E-25 2.6E-30 230.1 20.2 203 315-533 2-211 (231)
13 PRK08051 fre FMN reductase; Va 99.9 1.3E-25 2.8E-30 230.5 20.2 203 313-534 4-209 (232)
14 cd00322 FNR_like Ferredoxin re 99.9 1.7E-25 3.6E-30 227.1 20.7 201 319-535 3-207 (223)
15 cd06187 O2ase_reductase_like T 99.9 1.1E-25 2.3E-30 229.4 19.2 201 317-533 2-204 (224)
16 cd06210 MMO_FAD_NAD_binding Me 99.9 1.3E-25 2.8E-30 230.9 19.6 204 313-533 3-215 (236)
17 cd06190 T4MO_e_transfer_like T 99.9 2.5E-25 5.5E-30 228.1 20.1 204 317-535 2-212 (232)
18 cd06217 FNR_iron_sulfur_bindin 99.9 2.2E-25 4.8E-30 228.7 19.7 207 312-533 2-215 (235)
19 KOG0534 NADH-cytochrome b-5 re 99.9 3.7E-25 8.1E-30 228.9 20.2 213 311-537 51-271 (286)
20 cd06195 FNR1 Ferredoxin-NADP+ 99.9 4.4E-25 9.5E-30 227.8 20.6 202 316-534 2-216 (241)
21 cd06194 FNR_N-term_Iron_sulfur 99.9 4E-25 8.6E-30 225.1 19.9 198 317-535 2-203 (222)
22 cd06213 oxygenase_e_transfer_s 99.9 6E-25 1.3E-29 224.7 21.0 202 314-534 3-208 (227)
23 cd06209 BenDO_FAD_NAD Benzoate 99.9 4.8E-25 1E-29 225.5 20.1 202 313-534 3-208 (228)
24 cd06221 sulfite_reductase_like 99.9 6.6E-25 1.4E-29 228.3 21.0 197 317-533 2-204 (253)
25 cd06211 phenol_2-monooxygenase 99.9 7.6E-25 1.6E-29 225.6 20.6 207 312-535 7-220 (238)
26 PRK08345 cytochrome-c3 hydroge 99.9 9E-25 2E-29 231.5 21.7 204 312-534 6-227 (289)
27 cd06198 FNR_like_3 NAD(P) bind 99.9 9.2E-25 2E-29 221.6 19.6 188 324-533 7-195 (216)
28 cd06197 FNR_like_2 FAD/NAD(P) 99.9 1.3E-24 2.9E-29 221.3 20.7 178 319-534 3-205 (220)
29 PRK11872 antC anthranilate dio 99.9 1.2E-24 2.6E-29 235.7 20.4 205 312-534 107-316 (340)
30 PRK13289 bifunctional nitric o 99.9 4.6E-24 1E-28 236.3 24.4 170 311-496 154-330 (399)
31 cd06183 cyt_b5_reduct_like Cyt 99.9 1.7E-24 3.6E-29 221.9 18.8 204 315-532 2-214 (234)
32 TIGR02160 PA_CoA_Oxy5 phenylac 99.9 4.7E-24 1E-28 232.4 23.3 170 312-496 2-179 (352)
33 PRK07609 CDP-6-deoxy-delta-3,4 99.9 2.1E-24 4.6E-29 233.9 20.3 204 312-534 103-313 (339)
34 cd06188 NADH_quinone_reductase 99.9 1.5E-24 3.2E-29 229.3 18.1 208 312-535 10-265 (283)
35 cd06196 FNR_like_1 Ferredoxin 99.9 3.8E-24 8.2E-29 217.3 19.7 196 313-535 2-202 (218)
36 cd06214 PA_degradation_oxidore 99.9 1.3E-23 2.8E-28 216.5 22.0 207 313-534 3-221 (241)
37 PRK10684 HCP oxidoreductase, N 99.9 9.4E-24 2E-28 228.2 20.7 204 313-534 11-218 (332)
38 PRK10926 ferredoxin-NADP reduc 99.9 2.1E-23 4.5E-28 216.4 21.7 207 311-535 4-222 (248)
39 cd06185 PDR_like Phthalate dio 99.9 5.5E-23 1.2E-27 207.6 22.9 141 318-474 2-148 (211)
40 COG1018 Hmp Flavodoxin reducta 99.9 7.5E-23 1.6E-27 212.9 24.4 149 311-470 5-157 (266)
41 PTZ00274 cytochrome b5 reducta 99.9 3.6E-23 7.7E-28 221.7 21.4 215 311-534 52-278 (325)
42 cd06218 DHOD_e_trans FAD/NAD b 99.9 3.8E-23 8.3E-28 214.1 19.1 191 317-533 2-194 (246)
43 PRK00054 dihydroorotate dehydr 99.9 9.1E-23 2E-27 211.8 21.4 192 312-534 5-196 (250)
44 PTZ00319 NADH-cytochrome B5 re 99.9 6.8E-23 1.5E-27 218.1 20.8 207 312-534 34-282 (300)
45 PRK08221 anaerobic sulfite red 99.9 7.9E-23 1.7E-27 213.8 20.7 197 313-534 9-207 (263)
46 cd06192 DHOD_e_trans_like FAD/ 99.9 9E-23 2E-27 210.9 20.8 191 317-534 2-193 (243)
47 PLN03116 ferredoxin--NADP+ red 99.9 1.3E-22 2.8E-27 216.8 22.2 214 313-536 26-276 (307)
48 PRK06222 ferredoxin-NADP(+) re 99.9 1.9E-22 4E-27 213.0 21.8 193 314-535 2-197 (281)
49 cd06219 DHOD_e_trans_like1 FAD 99.9 1.5E-22 3.3E-27 209.9 20.3 191 315-534 2-195 (248)
50 TIGR02911 sulfite_red_B sulfit 99.9 1.7E-22 3.7E-27 211.0 19.8 196 313-533 7-204 (261)
51 cd06208 CYPOR_like_FNR These f 99.9 3.9E-22 8.4E-27 211.1 22.7 215 313-536 10-256 (286)
52 PRK05713 hypothetical protein; 99.9 2.6E-22 5.5E-27 215.1 18.8 194 312-534 92-289 (312)
53 PRK05802 hypothetical protein; 99.9 7.9E-22 1.7E-26 211.3 22.3 149 313-474 66-222 (320)
54 PRK05464 Na(+)-translocating N 99.9 3.8E-22 8.3E-27 221.4 19.8 206 313-534 135-388 (409)
55 PLN02252 nitrate reductase [NA 99.9 8.2E-22 1.8E-26 234.3 21.2 211 311-535 634-871 (888)
56 TIGR01941 nqrF NADH:ubiquinone 99.9 7.5E-22 1.6E-26 218.8 18.3 206 313-534 131-384 (405)
57 cd06182 CYPOR_like NADPH cytoc 99.9 1.7E-21 3.6E-26 204.2 19.9 199 323-536 14-232 (267)
58 PLN03115 ferredoxin--NADP(+) r 99.9 1.2E-21 2.6E-26 212.3 18.7 209 315-532 94-332 (367)
59 cd06220 DHOD_e_trans_like2 FAD 99.9 6.7E-21 1.4E-25 195.8 21.2 135 315-473 2-136 (233)
60 COG0543 UbiB 2-polyprenylpheno 99.9 6.2E-21 1.3E-25 198.1 21.1 194 314-533 10-206 (252)
61 cd06201 SiR_like2 Cytochrome p 99.9 7.7E-21 1.7E-25 201.4 20.8 203 311-536 45-262 (289)
62 cd06200 SiR_like1 Cytochrome p 99.9 8.7E-21 1.9E-25 196.4 20.1 191 325-534 17-218 (245)
63 PF08030 NAD_binding_6: Ferric 99.9 5.9E-22 1.3E-26 190.5 8.8 79 416-498 1-80 (156)
64 TIGR03224 benzo_boxA benzoyl-C 99.9 4E-20 8.6E-25 204.7 22.0 213 312-538 143-382 (411)
65 PRK12778 putative bifunctional 99.8 5.4E-19 1.2E-23 210.6 21.3 193 314-535 2-197 (752)
66 PTZ00306 NADH-dependent fumara 99.8 7.3E-19 1.6E-23 217.2 20.9 211 311-533 914-1143(1167)
67 cd06193 siderophore_interactin 99.8 1.3E-18 2.8E-23 179.1 17.3 186 317-533 2-212 (235)
68 PRK12779 putative bifunctional 99.8 1.9E-17 4.2E-22 199.5 21.4 145 312-471 649-797 (944)
69 PRK12775 putative trifunctiona 99.8 2E-17 4.3E-22 201.0 21.4 192 314-536 2-198 (1006)
70 PF08022 FAD_binding_8: FAD-bi 99.8 5.4E-20 1.2E-24 165.4 -1.9 95 313-409 3-104 (105)
71 PF01794 Ferric_reduct: Ferric 99.7 6E-17 1.3E-21 149.6 12.1 119 160-278 1-122 (125)
72 cd06206 bifunctional_CYPOR The 99.6 1E-15 2.2E-20 168.7 11.5 179 338-532 146-341 (384)
73 cd06199 SiR Cytochrome p450- l 99.6 2.4E-15 5.3E-20 164.2 12.7 176 336-531 129-320 (360)
74 cd06207 CyPoR_like NADPH cytoc 99.6 5.2E-15 1.1E-19 163.0 12.2 167 354-532 161-343 (382)
75 TIGR01931 cysJ sulfite reducta 99.6 6.5E-15 1.4E-19 170.5 10.1 175 337-531 367-557 (597)
76 cd06203 methionine_synthase_re 99.5 7.4E-14 1.6E-18 154.6 15.7 172 354-531 171-357 (398)
77 PRK06214 sulfite reductase; Pr 99.5 1E-13 2.2E-18 157.0 15.3 163 354-531 313-489 (530)
78 COG2871 NqrF Na+-transporting 99.5 6.7E-14 1.4E-18 141.0 10.9 186 329-531 154-386 (410)
79 cd06204 CYPOR NADPH cytochrome 99.5 4.1E-13 8.8E-18 149.5 15.3 170 354-532 175-377 (416)
80 cd06202 Nitric_oxide_synthase 99.4 7.8E-13 1.7E-17 146.7 14.2 168 354-531 174-362 (406)
81 PRK10953 cysJ sulfite reductas 99.4 4E-13 8.6E-18 155.1 10.8 175 337-531 370-559 (600)
82 PF00970 FAD_binding_6: Oxidor 99.3 1.8E-11 4E-16 108.5 9.8 91 314-409 2-97 (99)
83 PF00175 NAD_binding_1: Oxidor 99.3 4.3E-12 9.3E-17 114.2 5.5 102 421-534 1-107 (109)
84 PRK06567 putative bifunctional 99.2 5.5E-10 1.2E-14 132.4 17.2 119 313-440 792-914 (1028)
85 KOG3378 Globins and related he 98.9 2.7E-09 5.8E-14 107.4 6.1 130 310-442 148-288 (385)
86 COG0369 CysJ Sulfite reductase 98.7 8.4E-08 1.8E-12 109.9 13.2 162 355-530 371-546 (587)
87 PRK05419 putative sulfite oxid 98.6 3.7E-06 8.1E-11 84.5 20.3 123 154-284 41-164 (205)
88 KOG1158 NADP/FAD dependent oxi 98.4 6.8E-07 1.5E-11 102.6 9.9 168 354-531 419-605 (645)
89 COG2717 Predicted membrane pro 97.8 0.0014 3E-08 65.4 16.9 148 155-309 42-195 (209)
90 KOG1159 NADP-dependent flavopr 97.5 0.00044 9.6E-09 75.8 9.4 153 356-531 367-534 (574)
91 COG2375 ViuB Siderophore-inter 96.8 0.12 2.7E-06 53.7 19.1 138 312-464 18-182 (265)
92 PF08021 FAD_binding_9: Sidero 95.8 0.065 1.4E-06 49.2 9.3 90 315-409 1-117 (117)
93 PRK08051 fre FMN reductase; Va 93.3 0.052 1.1E-06 55.7 2.5 32 667-698 197-231 (232)
94 cd06215 FNR_iron_sulfur_bindin 92.0 0.16 3.4E-06 51.8 4.0 32 665-696 198-231 (231)
95 cd06197 FNR_like_2 FAD/NAD(P) 91.4 0.14 3E-06 52.2 2.8 27 666-695 192-218 (220)
96 cd06195 FNR1 Ferredoxin-NADP+ 91.3 0.18 3.9E-06 51.8 3.6 32 665-696 202-241 (241)
97 cd06217 FNR_iron_sulfur_bindin 91.2 0.14 3.1E-06 52.2 2.7 31 666-696 203-235 (235)
98 cd06189 flavin_oxioreductase N 91.1 0.2 4.4E-06 50.8 3.8 32 665-696 191-224 (224)
99 cd06188 NADH_quinone_reductase 91.1 0.13 2.8E-06 54.4 2.3 34 663-696 248-283 (283)
100 cd06216 FNR_iron_sulfur_bindin 90.9 0.23 4.9E-06 51.2 3.9 32 665-696 211-243 (243)
101 cd06209 BenDO_FAD_NAD Benzoate 90.7 0.26 5.7E-06 50.1 4.1 49 648-696 175-227 (228)
102 PRK07609 CDP-6-deoxy-delta-3,4 90.2 0.21 4.7E-06 54.2 3.1 34 665-698 299-334 (339)
103 cd06198 FNR_like_3 NAD(P) bind 90.1 0.18 4E-06 50.8 2.3 33 664-696 181-215 (216)
104 PRK11872 antC anthranilate dio 89.5 0.27 5.9E-06 53.6 3.2 32 666-697 303-336 (340)
105 cd06187 O2ase_reductase_like T 89.4 0.4 8.7E-06 48.5 4.2 49 648-696 172-224 (224)
106 PRK10684 HCP oxidoreductase, N 88.9 0.29 6.2E-06 53.1 2.9 46 649-697 187-238 (332)
107 cd06196 FNR_like_1 Ferredoxin 88.7 0.27 5.9E-06 49.6 2.3 44 650-694 172-218 (218)
108 cd06211 phenol_2-monooxygenase 88.6 0.42 9.2E-06 49.0 3.8 32 665-696 205-238 (238)
109 cd06213 oxygenase_e_transfer_s 88.4 0.5 1.1E-05 48.1 4.1 49 648-696 177-227 (227)
110 PRK05713 hypothetical protein; 88.3 0.29 6.4E-06 52.6 2.5 30 667-696 277-308 (312)
111 cd06190 T4MO_e_transfer_like T 88.3 0.31 6.8E-06 49.7 2.5 33 664-696 196-231 (232)
112 PRK05464 Na(+)-translocating N 88.0 0.36 7.7E-06 54.1 2.9 32 665-696 374-407 (409)
113 cd06210 MMO_FAD_NAD_binding Me 88.0 0.62 1.3E-05 47.6 4.5 31 666-696 203-235 (236)
114 cd06218 DHOD_e_trans FAD/NAD b 86.7 0.95 2.1E-05 46.9 5.1 48 648-696 162-211 (246)
115 TIGR01941 nqrF NADH:ubiquinone 85.8 0.55 1.2E-05 52.5 2.9 31 666-696 371-403 (405)
116 cd00322 FNR_like Ferredoxin re 85.5 0.47 1E-05 47.7 2.0 31 664-694 191-223 (223)
117 PF00175 NAD_binding_1: Oxidor 85.0 0.7 1.5E-05 40.8 2.7 20 662-681 90-109 (109)
118 cd06220 DHOD_e_trans_like2 FAD 84.8 1.3 2.7E-05 45.5 4.8 47 650-696 152-200 (233)
119 cd06214 PA_degradation_oxidore 83.9 0.66 1.4E-05 47.5 2.3 34 663-696 205-240 (241)
120 cd06194 FNR_N-term_Iron_sulfur 82.4 0.99 2.1E-05 45.6 2.8 32 665-696 188-221 (222)
121 PRK08345 cytochrome-c3 hydroge 79.8 1.6 3.4E-05 46.5 3.4 29 666-694 214-244 (289)
122 cd06193 siderophore_interactin 79.1 1.6 3.5E-05 44.8 3.0 31 665-695 199-232 (235)
123 PRK06222 ferredoxin-NADP(+) re 74.9 2.9 6.2E-05 44.3 3.6 23 667-689 184-206 (281)
124 cd06221 sulfite_reductase_like 72.1 4.5 9.8E-05 42.0 4.2 29 665-693 191-221 (253)
125 PRK00054 dihydroorotate dehydr 69.2 5.9 0.00013 41.0 4.3 40 649-688 166-205 (250)
126 PLN03116 ferredoxin--NADP+ red 67.4 5.3 0.00012 42.8 3.7 19 667-685 262-280 (307)
127 cd06183 cyt_b5_reduct_like Cyt 67.3 3.7 8E-05 41.6 2.3 26 663-688 200-226 (234)
128 COG0543 UbiB 2-polyprenylpheno 66.0 6.3 0.00014 41.0 3.8 40 648-687 174-215 (252)
129 cd06208 CYPOR_like_FNR These f 64.6 6.1 0.00013 41.8 3.5 20 666-685 241-260 (286)
130 PRK10926 ferredoxin-NADP reduc 64.4 4.8 0.0001 41.7 2.6 21 665-685 207-227 (248)
131 cd06201 SiR_like2 Cytochrome p 61.2 5.5 0.00012 42.4 2.3 20 666-685 247-266 (289)
132 cd06219 DHOD_e_trans_like1 FAD 60.5 6.7 0.00015 40.5 2.8 23 667-689 183-205 (248)
133 PTZ00319 NADH-cytochrome B5 re 58.2 7.3 0.00016 41.7 2.7 31 665-695 268-299 (300)
134 cd06182 CYPOR_like NADPH cytoc 57.0 7.2 0.00016 40.9 2.3 20 666-685 216-236 (267)
135 TIGR02911 sulfite_red_B sulfit 57.0 7.8 0.00017 40.5 2.6 25 665-689 191-215 (261)
136 cd06200 SiR_like1 Cytochrome p 56.8 7.5 0.00016 40.2 2.4 19 667-685 205-224 (245)
137 KOG0534 NADH-cytochrome b-5 re 56.4 10 0.00022 40.2 3.3 36 650-685 236-274 (286)
138 COG2717 Predicted membrane pro 54.6 1.6E+02 0.0035 29.8 11.2 59 149-213 108-166 (209)
139 PRK05802 hypothetical protein; 54.0 11 0.00025 40.7 3.3 32 652-685 244-275 (320)
140 PF00033 Cytochrom_B_N: Cytoch 53.0 61 0.0013 31.3 8.1 31 187-217 41-71 (188)
141 cd06192 DHOD_e_trans_like FAD/ 52.8 14 0.0003 37.9 3.6 22 666-687 180-201 (243)
142 PRK12779 putative bifunctional 51.6 12 0.00026 46.6 3.3 28 667-694 850-878 (944)
143 TIGR03224 benzo_boxA benzoyl-C 50.9 14 0.00031 41.4 3.6 19 667-685 366-388 (411)
144 cd06206 bifunctional_CYPOR The 48.9 12 0.00025 41.6 2.4 28 324-351 15-42 (384)
145 PTZ00274 cytochrome b5 reducta 48.6 9 0.00019 41.6 1.4 17 666-682 265-281 (325)
146 PRK08221 anaerobic sulfite red 48.4 13 0.00029 38.8 2.6 25 665-689 193-217 (263)
147 PLN03115 ferredoxin--NADP(+) r 48.1 17 0.00037 40.2 3.5 20 666-685 321-340 (367)
148 PF01292 Ni_hydr_CYTB: Prokary 47.9 1.4E+02 0.0031 28.7 9.8 23 192-214 42-64 (182)
149 cd08554 Cyt_b561 Eukaryotic cy 44.5 32 0.00069 31.8 4.3 22 189-210 105-126 (131)
150 PF03188 Cytochrom_B561: Eukar 44.1 1.1E+02 0.0024 28.2 7.9 22 189-210 104-125 (137)
151 PRK12778 putative bifunctional 43.9 20 0.00044 43.4 3.6 23 667-689 184-206 (752)
152 cd06207 CyPoR_like NADPH cytoc 39.5 18 0.0004 40.0 2.2 28 324-351 15-43 (382)
153 cd08760 Cyt_b561_FRRS1_like Eu 37.7 2.4E+02 0.0052 27.8 9.6 52 159-214 107-159 (191)
154 cd06204 CYPOR NADPH cytochrome 37.3 22 0.00047 40.0 2.3 37 315-351 9-50 (416)
155 PF13706 PepSY_TM_3: PepSY-ass 35.6 45 0.00097 23.9 2.9 19 191-209 3-21 (37)
156 PF14358 DUF4405: Domain of un 35.5 57 0.0012 26.1 3.9 31 183-213 32-62 (64)
157 cd06202 Nitric_oxide_synthase 35.1 26 0.00055 39.3 2.4 29 324-352 15-45 (406)
158 PF01794 Ferric_reduct: Ferric 35.0 76 0.0016 28.4 5.2 45 240-284 2-52 (125)
159 smart00665 B561 Cytochrome b-5 34.6 55 0.0012 30.1 4.2 19 191-209 105-123 (129)
160 PTZ00306 NADH-dependent fumara 34.1 25 0.00055 44.9 2.4 27 664-690 1129-1155(1167)
161 PLN02252 nitrate reductase [NA 33.6 42 0.00091 41.5 4.1 25 664-688 855-880 (888)
162 cd06199 SiR Cytochrome p450- l 33.2 26 0.00057 38.4 2.1 29 324-352 15-44 (360)
163 PF13172 PepSY_TM_1: PepSY-ass 29.8 66 0.0014 22.5 2.9 22 190-211 3-24 (34)
164 PF00667 FAD_binding_1: FAD bi 29.0 57 0.0012 33.1 3.6 27 354-380 176-202 (219)
165 PRK12775 putative trifunctiona 27.9 64 0.0014 40.6 4.4 22 667-688 184-205 (1006)
166 PF03929 PepSY_TM: PepSY-assoc 27.7 1.1E+02 0.0024 20.5 3.5 18 193-210 2-19 (27)
167 PF10067 DUF2306: Predicted me 25.0 2.5E+02 0.0054 24.9 6.6 23 191-213 4-26 (103)
168 PLN02631 ferric-chelate reduct 24.8 4.3E+02 0.0093 32.0 10.2 51 234-284 151-207 (699)
169 KOG4452 Predicted membrane pro 24.4 71 0.0015 26.1 2.5 48 13-61 29-76 (79)
170 TIGR01931 cysJ sulfite reducta 22.5 53 0.0011 38.8 2.2 38 314-351 237-280 (597)
171 cd08766 Cyt_b561_ACYB-1_like P 22.5 3.7E+02 0.008 25.6 7.5 18 191-208 112-129 (144)
172 cd08765 Cyt_b561_CYBRD1 Verteb 22.3 3.5E+02 0.0075 26.1 7.3 22 189-210 117-138 (153)
173 cd06203 methionine_synthase_re 21.0 65 0.0014 35.9 2.4 28 324-351 15-43 (398)
174 PRK12446 undecaprenyldiphospho 20.7 1.2E+02 0.0026 33.1 4.4 24 417-440 2-27 (352)
No 1
>PLN02631 ferric-chelate reductase
Probab=100.00 E-value=1.8e-151 Score=1293.66 Aligned_cols=693 Identities=62% Similarity=1.128 Sum_probs=636.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhhccchhHHhhhhhhhhccccceeecccchhhHHHHHHHHHHHHHHHHHhhcccCCc
Q 005360 1 MGSSVVLMRTICFAVFLGWLLVWALIPTKVYKNTWTPKLNNKLNSTYFREQGTNLLLFSFPVMLIALLGCVYLHLQKKPN 80 (700)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~y~~~v~~ia~~~~~~l~~~~~~~ 80 (700)
|+++|+++|++||++|+||+++|+|+||++|++.|.+.++++++|+|||.||+.+++|.+||+++|+++|+||++.|+.+
T Consensus 1 ~~~~~~~~~~~~~~~f~~~~~~~~~~pt~~~~~~~~~~~~~~~~~t~fg~~g~~~l~~~~p~~~~a~~~~~yl~~~~~~~ 80 (699)
T PLN02631 1 MGNMRSLVKMLMVVLFLGWIFVWIMISTNLFKSKWTPKLAKNLNTTYFGPQGTNLVLLTVPMMFIAVLSCVYLHTQKKPT 80 (699)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhheeCcHHHHhhhhHHHHhhhcCceeccccchhhhhhhHHHHHHHHHHHheeeccccC
Confidence 78899999999999999999999999999999999999988889999999999999999999999999999999998865
Q ss_pred cccccccCCCCcceeeeeceEEecccccchHHHHHHHHHHHHHHHHHHhhhcccccccccccccchhhHHHHHHHHHHHH
Q 005360 81 KLQSKRKMRSPRLFFSQRPVLVMAPLGIVTAIELTIAVMFVAFLIWSLANYLYVSFGHLHMHKAGEKVWQAKFRSVSLRL 160 (700)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~p~l~~~~~~i~tr~e~l~l~~~~~l~i~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~va~R~ 160 (700)
..++|++.++ .|++|+++++|+|++|..|.+++++|+++++|.+++|.+++++...+++...+.|++.++.+|+|+
T Consensus 81 ~~~~~~~~~~----~~~~p~lv~~~~givs~~e~~~~~~f~~~~~w~~~~y~~~~~~~~~~~~~~~~~~~~~l~~ig~Rt 156 (699)
T PLN02631 81 QPQREWKLKR----RMGRVIMVMNPLGIVTATELTFSLLFVALLAWSLYNYLYLSYHVHLHNDDNAKIWQAKFRAFGLRI 156 (699)
T ss_pred cchhhccccc----cccCcEEeeCCceeeeHHHHHHHHHHHHHHHHHHHHHHHhhheeccCCccchhHHHHHHHHHHHHH
Confidence 4444443332 389999999999999999999999999999999999999988622334445779999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcccchhHH
Q 005360 161 GYIGNTCWAFLFFPVTRGSSILPLVGLTSESSIKYHIWLGHLSNALFALHAVGFLIYWAMTNQMAEVLEWSETYVSNVAG 240 (700)
Q Consensus 161 G~ia~~~l~ll~l~~~Rnn~l~~ltG~~~e~~~~~Hrwlgr~~~~~~~iH~i~~~~~~~~~~~~~~~~~w~~~~~~~~~G 240 (700)
|++|.+|+|++++|++|||+++|+|||+||+++.||||+||++++++++|+++|+++|...+.+.+...|...++.+++|
T Consensus 157 Gila~~~lpll~L~a~Rnn~L~~ltG~s~e~~i~yHRWlGri~~~la~iH~i~y~i~~~~~~~~~~~~~w~~~~~~~~~G 236 (699)
T PLN02631 157 GYVGHICWAFLFFPVTRASTILPLVGLTSESSIKYHIWLGHVSNFLFLVHTVVFLIYWAMINKLMETFAWNPTYVPNLAG 236 (699)
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998777776666776666778999
Q ss_pred HHHHHHHHHHHHhcchhHhhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhccccceEEEEEE
Q 005360 241 VIAIAIATVIWATSLPRFRRKMFELFFYTHHLYILYIIFYVLHVGPAYFCMILPGIFLFAVDRYLRFLQSRNRARLLSAR 320 (700)
Q Consensus 241 ~ia~~~l~~l~~~Sl~~iRr~~YE~F~~~H~l~~~~lv~~~~H~~~~~~~~i~~~i~l~~~dR~lR~~~~~~~~~vvs~~ 320 (700)
++|++++++|+++|++++||++||+|+++|++++++++++++|++..|.+|+++++++|++||++|++|.....++++++
T Consensus 237 viA~v~~~lm~~~Sl~~~RRr~YE~F~~~Hillaifiv~~~~H~g~~w~~~~~~~ialw~~DR~lR~~r~~~~~~lv~~~ 316 (699)
T PLN02631 237 TIAMVIGIAMWVTSLPSFRRKKFELFFYTHHLYGLYIVFYVIHVGDSWFCMILPNIFLFFIDRYLRFLQSTKRSRLVSAR 316 (699)
T ss_pred HHHHHHHHHHHHhccHHHHhhhhhHHHHHHHHHHHHHHheEEecCCchHHHHHHHHHHHHHHHHHHHHHHhceEEEEEEE
Confidence 99999999999999999999999999999999988888999999877777889999999999999999988778999999
Q ss_pred EecCCeEEEEEeCCCCcccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeCCCchHHHHhhhccCCCceEE
Q 005360 321 ALPCGVVELNFSKSPGLYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTEGSWTQKLYQQISSSVDRLEV 400 (700)
Q Consensus 321 ~l~~~~~~l~~~~~~~~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~~~~~~~~~~~~v 400 (700)
.+++|+++++++++++++++||||+++++|..+++|+|||||+|+|+++++++++.||++|++|++|++.+..++++.++
T Consensus 317 ~l~~d~l~l~~~~~~~~~~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~~Gg~T~~L~~~l~~~g~~i~V 396 (699)
T PLN02631 317 ILPSDNLELTFSKTPGLHYTPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRRQGSWTQKLYTHLSSSIDSLEV 396 (699)
T ss_pred EeCCCeEEEEEEcCCCCcCCCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEEcCChHHHHHHHhhhcCCCeeEE
Confidence 99999999999988889999999999999998899999999999986457889999999999999999987654556899
Q ss_pred EEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhhHHHhcccCCCCcc
Q 005360 401 SVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSMLNIMLPVSDAPTE 480 (700)
Q Consensus 401 ~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~~d~L~~~~~~~~~ 480 (700)
.+|||||++..+..+++++++||||+||||++|++++++++.. +.+.+.++++|+|++|+.+|+.+.||+++...++++
T Consensus 397 ~VeGPYG~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~-~~~~~~~~V~Li~~vR~~~dL~f~deL~~l~~~~~~ 475 (699)
T PLN02631 397 STEGPYGPNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQ-NPSTKLPDVLLVCSFKHYHDLAFLDLIFPLDISVSD 475 (699)
T ss_pred EEECCCCCCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhccc-ccccCCCcEEEEEEECCHHHhhhHHHHhhhccchhh
Confidence 9999999865556788999999999999999999999987643 222334589999999999999999999887666666
Q ss_pred cCCCceEEEEEEeCCCCCCC-cchhhhhhhhccCCCCCCCCeEeEeCCcchHHHHHHHHHHHHHHHHHHHhhhheeeccc
Q 005360 481 LSKLQLQIEAYVTRDSEQPK-TDTLKELQSIWFKSNPSDSPVSGALGCNSWLWLAVVIASSFVMFLLLLGIVTRFYIYPI 559 (700)
Q Consensus 481 l~~~~l~i~iyvTr~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~vcGp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 559 (700)
+++.++++++|+||++++++ .++.+..++.+++|+++|+|++.+.||++|+|+|+++++||++|++++|+++||||||+
T Consensus 476 l~~~ni~i~iyVTR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~lw~~~~~~~s~~~f~~~~~~~~~y~i~~~ 555 (699)
T PLN02631 476 ISRLNLRIEAYITREDKKPETTDDHRLLQTKWFKPQPLDSPISPVLGPNNFLWLGVVILSSFVMFLLLIGIVTRYYIYPV 555 (699)
T ss_pred hhcCceEEEEEEcCCCCCcccccccccccccccccCCCCCCceeeecCCccHHHHHHHHHHHHHHHHHHHhhheeEeccc
Confidence 67789999999999975553 55667888999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceecccHHHHHHHHHHHHhhhccCceEEEEeccccchHHH----hhhcccCCCCCCCCCCCccccccccccccCC
Q 005360 560 ERNGTEVYHYSYKCLWDMFLVCVCVFLASSAVYLWLKKQQNAIEV----KQIQNMEVPTPTTSPSSWFHTADRELEESLP 635 (700)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (700)
|||++++|+||++++++++..|++|+++|+++++| +|+++++++ +|+|++|+++|..+|++|++|+|+|+| |.|
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 633 (699)
T PLN02631 556 DHNTGSIYNFSYRGLWDMFLGSVCIFISSSIVFLW-RKKQNKEGDKESKKQVQSVEFQTPTSSPGSWFHGHERELE-SVP 633 (699)
T ss_pred CCCCCcccchHHHHHHHHHHHHhheeccceeeeee-chhhccccccchhhccccccCCCCCCCCcccccccchhhh-ccc
Confidence 99999999999999999999999889999999999 999998877 999999999999999999999999999 999
Q ss_pred CcccccceeEEEcCCCChHHHHhhcCCC-eeEEEEeCCcchHHHHHHHHhcCCCCceEEeeccccC
Q 005360 636 NQCLVQATKFHFGERPNLNKILLDVKGT-DVGVLVCGPRKMRHEVAKICSSGLADNLHFESISFSW 700 (700)
Q Consensus 636 ~~~~~~~~~v~~G~Rp~~~~i~~~~~~~-~vgV~vcGP~~m~~~va~~c~~~~~~~~hf~s~~f~~ 700 (700)
+|+|+|.|++|||+|||+||||.+++|+ ||||+|||||+||+|||++|||++++||||||+||||
T Consensus 634 ~~~~~~~~~~~~g~rp~~~~i~~~~~~~~~vgvlv~gp~~~~~~va~~c~s~~~~~~~f~s~sf~~ 699 (699)
T PLN02631 634 YQSIVQATSVHFGSKPNLKKILLEAEGSEDVGVMVCGPRKMRHEVAKICSSGLAKNLHFEAISFNW 699 (699)
T ss_pred ccccccceeeeecCCCCHHHHHHhccCCCceeEEEECcHHHHHHHHHHHhcCCCcceeEEeecccC
Confidence 9999999999999999999999999775 9999999999999999999999999999999999999
No 2
>PLN02292 ferric-chelate reductase
Probab=100.00 E-value=2e-145 Score=1246.66 Aligned_cols=680 Identities=53% Similarity=1.007 Sum_probs=611.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhhccchhHHhhhhhhhhccc-cceeecccchhhHHHHHHHHHHHHHHHHHhhcccCC
Q 005360 1 MGSSVVLMRTICFAVFLGWLLVWALIPTKVYKNTWTPKLNNKL-NSTYFREQGTNLLLFSFPVMLIALLGCVYLHLQKKP 79 (700)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~g~~g~~~~~y~~~v~~ia~~~~~~l~~~~~~ 79 (700)
|.++|+++|++||++|+||+++|+|+||+.|++.|.+.+.+++ +|+|||.+|..+++|.+||+++|+++|+||++.|+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~pt~~~~~~~~~~~~~~~~~~t~fg~~g~~~~~~~~p~~~~a~~~~~~l~~~~~~ 87 (702)
T PLN02292 8 KDVIKGVIKFLMMVILMGTIVIWIMMPTSTYKTIWLPSMRAKLGKSTYFGAPGVNLLVYMFPMILLACLGCIYLHLKKQT 87 (702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheeeccHHHHhhccHHHHHhccCCceecccchhhHHHhhHHHHHHHHHHHHheecccc
Confidence 3568999999999999999999999999999999999888888 699999999999999999999999999999999875
Q ss_pred ccc---cccccCCCCcceeeeeceEEecccccchHHHHHHHHHHHHHHHHHHhhhcccccccccccc---cchhhHHHHH
Q 005360 80 NKL---QSKRKMRSPRLFFSQRPVLVMAPLGIVTAIELTIAVMFVAFLIWSLANYLYVSFGHLHMHK---AGEKVWQAKF 153 (700)
Q Consensus 80 ~~~---~~~~~~~~~~~~~~~~p~l~~~~~~i~tr~e~l~l~~~~~l~i~~~~~~~~~~~~~i~~~~---~~~~~~~~~l 153 (700)
+.. ++|+ .++++.+.|++|+++++|+|++|+.|.+++++|+++++|.+++|.|+.+..+++.+ ..+..|++++
T Consensus 88 ~~~~~~~~~~-~~~~~~~~~~~p~lv~~~~G~vt~~e~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 166 (702)
T PLN02292 88 TVNQFNREVR-KKGGKFGALRRPMLVKGPLGIVTVTEVMFLAMFMALLLWSLANYMYNTFVTITPQSAATDGESLWQARL 166 (702)
T ss_pred cccchhhccc-ccccceeeecCcEEeeCCcceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccccchHHHHHHH
Confidence 321 2222 35577788999999999999999999999999999999999999999988776652 2345789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhc
Q 005360 154 RSVSLRLGYIGNTCWAFLFFPVTRGSSILPLVGLTSESSIKYHIWLGHLSNALFALHAVGFLIYWAMTNQMAEVLEWSET 233 (700)
Q Consensus 154 ~~va~R~G~ia~~~l~ll~l~~~Rnn~l~~ltG~~~e~~~~~Hrwlgr~~~~~~~iH~i~~~~~~~~~~~~~~~~~w~~~ 233 (700)
+.+|+|+|++|.+|||++++|++|||+++++|||+||+++.||||+||++++++++|+++|+++|..+++..++..|...
T Consensus 167 ~~vg~R~Gila~~~lpll~l~~~Rnn~L~~ltG~s~e~f~~yHRWlGrii~ll~~lH~i~y~i~~~~~~~~~~~~~w~~~ 246 (702)
T PLN02292 167 DSIAVRLGLVGNICLAFLFYPVARGSSLLAAVGLTSESSIKYHIWLGHLVMTLFTSHGLCYIIYWISMNQVSQMLEWDRT 246 (702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999887777666677766
Q ss_pred ccchhHHHHHHHHHHHHHHhcchhHhhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhccccc
Q 005360 234 YVSNVAGVIAIAIATVIWATSLPRFRRKMFELFFYTHHLYILYIIFYVLHVGPAYFCMILPGIFLFAVDRYLRFLQSRNR 313 (700)
Q Consensus 234 ~~~~~~G~ia~~~l~~l~~~Sl~~iRr~~YE~F~~~H~l~~~~lv~~~~H~~~~~~~~i~~~i~l~~~dR~lR~~~~~~~ 313 (700)
+..+++|++|++++++|+++|++++||++||+|+++|++++++++++++|++..+..++++++++|++||++|++|.+..
T Consensus 247 ~~~~i~G~iAlv~~~il~v~Sl~~iRR~~YE~F~~~HiL~~v~~v~~~~H~~~~~~~~~~~~i~l~~~DR~lR~~r~~~~ 326 (702)
T PLN02292 247 GVSNLAGEIALVAGLVMWATTYPKIRRRFFEVFFYTHYLYIVFMLFFVFHVGISFALISFPGFYIFLVDRFLRFLQSRNN 326 (702)
T ss_pred chHHHHHHHHHHHHHHHHHHhhHHHHhcccHhHHHHHHHHHHHHeeeehhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 77889999999999999999999999999999999999998888888999987666678899999999999999999888
Q ss_pred eEEEEEEEecCCeEEEEEeCCCCcccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeCCCchHHHHhhhcc
Q 005360 314 ARLLSARALPCGVVELNFSKSPGLYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTEGSWTQKLYQQISS 393 (700)
Q Consensus 314 ~~vvs~~~l~~~~~~l~~~~~~~~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~~~~~~ 393 (700)
.++++++.+++|++++++++++.++++||||+++++|..+++|+|||||+|+|.+++++++++||+.|++|++|++.++.
T Consensus 327 ~~Iv~~~~l~~dvv~L~~~~~~~~~~~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~~G~~T~~L~~~l~~ 406 (702)
T PLN02292 327 VKLVSARVLPCDTVELNFSKNPMLMYSPTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIKSQGKWSTKLYHMLSS 406 (702)
T ss_pred eEEEEEEEcCCCEEEEEEEcCCCCCcCCCCeEEEEEccCCccceeeeEeeccCCCCCCEEEEEEEcCCchhHHHHHhCCC
Confidence 99999999999999999999888899999999999998888999999999988545778999999999999999998754
Q ss_pred CCC---ceEEEEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhhHHH
Q 005360 394 SVD---RLEVSVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSMLNI 470 (700)
Q Consensus 394 ~~~---~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~~d~ 470 (700)
+| +.++.+|||||+...+..+++++++||||+||||++++++++.++.+ +..++.++++|+|++|+++|+.++|+
T Consensus 407 -gd~i~~~~V~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~-~~~~~~~~V~LIw~vR~~~Dl~~ld~ 484 (702)
T PLN02292 407 -SDQIDRLAVSVEGPYGPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSS-TETCKIPKITLICAFKNSSDLSMLDL 484 (702)
T ss_pred -CCccccceEEEECCccCCccccccCCcEEEEEeccCHHHHHHHHHHHHhccc-cccCCCCcEEEEEEECCHHHhhHHHH
Confidence 33 35899999999876556678999999999999999999999987643 22223478999999999999999988
Q ss_pred hcccCCCCccc-CCCceEEEEEEeCCCCCCC---cchhhhhhhhccCCCCCCCCeEeEeCCcchHHHHHHHHHHHHHHHH
Q 005360 471 MLPVSDAPTEL-SKLQLQIEAYVTRDSEQPK---TDTLKELQSIWFKSNPSDSPVSGALGCNSWLWLAVVIASSFVMFLL 546 (700)
Q Consensus 471 L~~~~~~~~~l-~~~~l~i~iyvTr~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~vcGp~~~~~~~~~~~~s~~~~~~ 546 (700)
+.++.+...++ ++.++++++|+||+++++. ..+.+..++.+++|+++|++++.+||||+|+|+|+++++||++|++
T Consensus 485 l~~e~~~~~~l~~~~~~~i~iyvTr~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~Gp~~~~w~~~~~~~s~~~f~~ 564 (702)
T PLN02292 485 ILPTSGLETELSSFIDIQIKAFVTREKEAGVKESTGNMNIIKTLWFKPNLSDQPISPILGPNSWLWLAAILSSSFLIFII 564 (702)
T ss_pred HHHhhhhHHHHhhcCCceEEEEEeCCCCCCCcccccchhhhhhhcCCCCCCCCceEEEeCCCchHHHHHHHHHHHHHHHH
Confidence 87765321122 4578999999999875443 2233566778899999999999999999999999999999999999
Q ss_pred HHHhhhheeecccccCCCceecccHHHHHHHHHHHHhhhccCceEEEEeccccchH-HHhhhcccCCCCCCCCCCCcccc
Q 005360 547 LLGIVTRFYIYPIERNGTEVYHYSYKCLWDMFLVCVCVFLASSAVYLWLKKQQNAI-EVKQIQNMEVPTPTTSPSSWFHT 625 (700)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 625 (700)
++|+++||||||+|+|+++ |+||++++++++++|+||+++|+++++| |||++++ +.+|+|+++++
T Consensus 565 ~~~~~~~y~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~w-~~~~~~~~~~~~~~~~~~~------------ 630 (702)
T PLN02292 565 IIAIITRYHIYPIDQNSNK-YTLAYKSLIYLLVISISVVATSTAAMLW-NKKKYYKKSSQQVDNVDSP------------ 630 (702)
T ss_pred HHHHhheeEeccccCCCCC-CccHHHHHHHHHHHHHHhhhhhhHHHhh-cccccccchhccccccccc------------
Confidence 9999999999999999988 9999999999999999999999999999 7777666 88999998653
Q ss_pred ccccccccCCCcccccceeEEEcCCCChHHHHhhcCCCeeEEEEeCCcchHHHHHHHHhcCCCCceEEeeccccC
Q 005360 626 ADRELEESLPNQCLVQATKFHFGERPNLNKILLDVKGTDVGVLVCGPRKMRHEVAKICSSGLADNLHFESISFSW 700 (700)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~v~~G~Rp~~~~i~~~~~~~~vgV~vcGP~~m~~~va~~c~~~~~~~~hf~s~~f~~ 700 (700)
+|+| |.|+|+|+|.|++|||+|||+||||++++|+||||+|||||+||+|||++|||++++||||||+||||
T Consensus 631 --~~~~-~~~~~~~~~~~~~~~g~rp~~~~i~~~~~~~~vgvlv~gp~~~~~~va~~c~s~~~~~~~~~s~sf~~ 702 (702)
T PLN02292 631 --REIE-SSPQQLLVQRTNIHYGERPNLNKLLVGLKGSSVGVLVCGPKKMRQKVAKICSSGLAENLHFESISFSW 702 (702)
T ss_pred --cccc-cCcccccccceeeeccCCCCHHHHHHhcCCCceeEEEECcHHHHHHHHHHHhcCCCcceeEEeecccC
Confidence 5666 88999999999999999999999999999999999999999999999999999999999999999999
No 3
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=100.00 E-value=1.1e-127 Score=1103.34 Aligned_cols=674 Identities=33% Similarity=0.677 Sum_probs=570.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhccchhHHhhhhhhhhccccceeecccchhhHHHHHHHHHHHHHHHHHhhcccCCccc
Q 005360 3 SSVVLMRTICFAVFLGWLLVWALIPTKVYKNTWTPKLNNKLNSTYFREQGTNLLLFSFPVMLIALLGCVYLHLQKKPNKL 82 (700)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~y~~~v~~ia~~~~~~l~~~~~~~~~ 82 (700)
.+++++|++||++|+||+++|+|+||+.|++.|.+..+.. +|+|||+||.++++|.+||+++|+++++||++.|+....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~pt~~~~~~~~~~~~~~-~~t~fg~~g~~~~~~~~p~~~~a~~~~~yl~~~~~~~~~ 83 (722)
T PLN02844 5 LTLLVLKLLMILIFAGWIALWILKPTNLWTRKWKQAEDSA-RHTVFGYYGLNFAVYTFPPIALAIIGLVYLSLLSQEPHR 83 (722)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeeCCHHHHhhhhhHHhcc-cCceecccchhhHhHhhHHHHHHHHHHHheeeccccCcc
Confidence 4789999999999999999999999999999999965554 799999999999999999999999999999999875532
Q ss_pred cccccCCCCcceeeeeceEEecccccchHHHHHHHHHHHHHHHHHHhhhcccccccccccccc-hhhHHHHHHHHHHHHH
Q 005360 83 QSKRKMRSPRLFFSQRPVLVMAPLGIVTAIELTIAVMFVAFLIWSLANYLYVSFGHLHMHKAG-EKVWQAKFRSVSLRLG 161 (700)
Q Consensus 83 ~~~~~~~~~~~~~~~~p~l~~~~~~i~tr~e~l~l~~~~~l~i~~~~~~~~~~~~~i~~~~~~-~~~~~~~l~~va~R~G 161 (700)
+++ ++.+...|++|+++++|+|++|..|.+++++|+++++|.++.|.++++..+.+.+.. ...|+.++..+|+|+|
T Consensus 84 ~~~---~~~~~~~~~~p~lv~~~~givs~~e~~~~~~f~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~R~G 160 (722)
T PLN02844 84 RRG---ARSATIGVSNPVIVNSFIGILSCLEILAVLLFFLFLAWTFYARISNDFKKLMPVKSLNLNLWQLKYLRVATRFG 160 (722)
T ss_pred ccc---cccccccccCcEEecCCceeeeHHHHHHHHHHHHHHHHHHHHHHHhhhhhhCccccccchhHHHHHHHHHHHHH
Confidence 222 223334479999999999999999999999999999999999999998877765432 3489999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHhhhcccchhHH
Q 005360 162 YIGNTCWAFLFFPVTRGSSILPLVGLTSESSIKYHIWLGHLSNALFALHAVGFLIYWAMTNQMA-EVLEWSETYVSNVAG 240 (700)
Q Consensus 162 ~ia~~~l~ll~l~~~Rnn~l~~ltG~~~e~~~~~Hrwlgr~~~~~~~iH~i~~~~~~~~~~~~~-~~~~w~~~~~~~~~G 240 (700)
++|.+|||++++|++|||++.+++|++||+++.||||+||++++++++|+++|++.|...+... ++..|..++..+++|
T Consensus 161 ~la~~~Lpll~llv~Rnn~l~~ltGis~e~~i~fHrWlGr~~~llallH~i~~~i~w~~~~~~~~~~~~w~~~~~~~~~G 240 (722)
T PLN02844 161 LLAEACLALLLLPVLRGLALFRLLGIQFEASVRYHVWLGTSMIFFATVHGASTLFIWGISHHIQDEIWKWQKTGRIYLAG 240 (722)
T ss_pred HHHHHHHHHHHHHHhcccHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhccCcchhhhH
Confidence 9999999999999999999999999999999999999999999999999999999888776653 456687666678999
Q ss_pred HHHHHHHHHHHHhcchhHhhhchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhccccceEEEEEE
Q 005360 241 VIAIAIATVIWATSLPRFRRKMFELFFYTHHLYILYIIFYVLHVGPAYFCMILPGIFLFAVDRYLRFLQSRNRARLLSAR 320 (700)
Q Consensus 241 ~ia~~~l~~l~~~Sl~~iRr~~YE~F~~~H~l~~~~lv~~~~H~~~~~~~~i~~~i~l~~~dR~lR~~~~~~~~~vvs~~ 320 (700)
++|++++++|+++|++++||++||+|+++|++++++++++++|++..+.+|+++++++|++||++|+++++....+++++
T Consensus 241 ~IAlv~l~iL~itSl~~iRR~~YElF~~~H~L~ivflv~~~~H~~~~~~~~v~~~i~L~~~DRllR~~~s~~~~~vvs~~ 320 (722)
T PLN02844 241 EIALVTGLVIWITSLPQIRRKRFEIFYYTHHLYIVFLIFFLFHAGDRHFYMVFPGIFLFGLDKLLRIVQSRPETCILSAR 320 (722)
T ss_pred HHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHhhhHhhcCcchhhhHHHHHHHHHHHHhheEEEeeeEEEEEEE
Confidence 99999999999999999999999999999999988889999999876567889999999999999999887766778888
Q ss_pred EecCCeEEEEEeCCCCcccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeCCCchHHHHhhhccC---C--
Q 005360 321 ALPCGVVELNFSKSPGLYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTEGSWTQKLYQQISSS---V-- 395 (700)
Q Consensus 321 ~l~~~~~~l~~~~~~~~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~~~~~~~---~-- 395 (700)
..+++++++++++++.++++||||+++++|..+++|+|||||+|+|+++++.+++.||+.||+|++|++.+... +
T Consensus 321 ~~~~~~v~l~i~r~~~~~f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~gG~T~~L~~~i~~~l~~g~~ 400 (722)
T PLN02844 321 LFPCKAIELVLPKDPGLKYAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCEGGWTNSLYNKIQAELDSETN 400 (722)
T ss_pred EecCCEEEEEEECCCCCCcCCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCchHHHHHHHHhhccCCCC
Confidence 89999999999998889999999999999998899999999999876567789999999999999999876531 1
Q ss_pred --CceEEEEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhhHHHhcc
Q 005360 396 --DRLEVSVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSMLNIMLP 473 (700)
Q Consensus 396 --~~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~~d~L~~ 473 (700)
+..++.+|||||....+..+++++++||||+||||++|+++++.++.+ +.....++|+|+|++|+.+|+.+.|++.+
T Consensus 401 ~~~~~~v~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~-~~~~~~~~V~LIw~vR~~~dL~~~del~~ 479 (722)
T PLN02844 401 QMNCIPVAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSS-SRYRFPKRVQLIYVVKKSQDICLLNPISS 479 (722)
T ss_pred cccceEEEEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhccc-cccCCCCcEEEEEEECCHHHhhhHHHHHH
Confidence 135899999999986556678999999999999999999999987533 12223568999999999999999998864
Q ss_pred cCCCCcccCCCceEEEEEEeCCCCCCCc-----chhhhhhhhccCCCCCCCCeEeEeCCcchHHHHHHHHHHHHHHHHHH
Q 005360 474 VSDAPTELSKLQLQIEAYVTRDSEQPKT-----DTLKELQSIWFKSNPSDSPVSGALGCNSWLWLAVVIASSFVMFLLLL 548 (700)
Q Consensus 474 ~~~~~~~l~~~~l~i~iyvTr~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~~vcGp~~~~~~~~~~~~s~~~~~~~~ 548 (700)
..... ..+..++++++|+||++.+... ++++..+.+.++| +++.+++|||++|+|+|+++++||++|++++
T Consensus 480 ~l~~~-~~~~~~lkl~iyVTRE~~~~~rl~~~i~~~~~~~~~~~~~---~~~~~~i~G~~~~lw~~~~~~~s~~~f~~~~ 555 (722)
T PLN02844 480 LLLNQ-SSNQLNLKLKVFVTQEEKPNATLRELLNQFSQVQTVNFST---KCSRYAIHGLESFLWMAAMVALTSITFLVFL 555 (722)
T ss_pred HhHHh-HHHhcCceEEEEECCCCCCCCchhhHhhccchhhhcCCCC---CCCceEEeCCCchHHHHHHHHHHHHHHHHHH
Confidence 43210 1133588999999998744331 3445566677776 4455999999999999999999999999999
Q ss_pred HhhhheeecccccCC---------------CceecccHHHHHHHHHHHHhhhccCceEEEEeccccchHHHhhhcccCCC
Q 005360 549 GIVTRFYIYPIERNG---------------TEVYHYSYKCLWDMFLVCVCVFLASSAVYLWLKKQQNAIEVKQIQNMEVP 613 (700)
Q Consensus 549 ~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (700)
|+++|||| |+|||+ .++++||+++++++++|+++|++.|.++++| +.++..++.....+.+
T Consensus 556 ~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-- 631 (722)
T PLN02844 556 IGLNHIFI-PSEHKSHSGVKMAASGEMKTAKEKTPSWVVDLLLIVSFIIAITCSTFVAIIL-RWRRLKKEIPRVSQKQ-- 631 (722)
T ss_pred HHHheEEe-ccccccccchhcccccccccccCCCchHHHHHHHHHHHHHHheecceEeEee-eccccccCCccccccc--
Confidence 99999999 999988 4677899999999999999999988888888 4222222222111111
Q ss_pred CCCCCCCCccccccccccccCCCcccccceeEEEcCCCChHHHHhhc----CCCeeEEEEeCCcchHHHHHHHHhcCCC-
Q 005360 614 TPTTSPSSWFHTADRELEESLPNQCLVQATKFHFGERPNLNKILLDV----KGTDVGVLVCGPRKMRHEVAKICSSGLA- 688 (700)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~Rp~~~~i~~~~----~~~~vgV~vcGP~~m~~~va~~c~~~~~- 688 (700)
...+ .+++.| .+.++++++++|||+|||+||||+++ +|+||||+|||||+||++||++||+.+.
T Consensus 632 --~~~~----~~~~~~-----~~~~~~~~~~~~~g~rp~~~~i~~~~~~~~~~~~vgvlv~gp~~~~~~va~~~~~~~~~ 700 (722)
T PLN02844 632 --GIKP----EEGSME-----KRGPVLEEHEIHFGGRPNFQDIFSKFPKETRGSDIGVLVCGPETMKESVASMCRLKSQC 700 (722)
T ss_pred --cCCC----CCcccc-----ccccccccceeecCCCCCHHHHHHHhhhhccCCceeEEEeCchHHHHHHHHHHHhcccc
Confidence 0110 001111 34677899999999999999999887 6789999999999999999999999555
Q ss_pred ----------CceEEeeccccC
Q 005360 689 ----------DNLHFESISFSW 700 (700)
Q Consensus 689 ----------~~~hf~s~~f~~ 700 (700)
++|||||+|||+
T Consensus 701 ~~~~~~~~~~~~~~~hs~~f~l 722 (722)
T PLN02844 701 FNVGDDGKRKMYFSFHSLNFTL 722 (722)
T ss_pred cccccccccCCceeeeecccCC
Confidence 779999999996
No 4
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.4e-68 Score=610.70 Aligned_cols=484 Identities=28% Similarity=0.492 Sum_probs=395.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccchhHHhhhhhhhhccccceeecccchhhHHHHHHHHHHHHHHHHHhhcccCCcccc
Q 005360 4 SVVLMRTICFAVFLGWLLVWALIPTKVYKNTWTPKLNNKLNSTYFREQGTNLLLFSFPVMLIALLGCVYLHLQKKPNKLQ 83 (700)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~y~~~v~~ia~~~~~~l~~~~~~~~~~ 83 (700)
.+.+.++++..++++| ..|++.++..|.+.|.+.++-++.. |++..+...+..-.+....+.....+ .+.......
T Consensus 36 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-y~~~~~~~~ll~~~~~~~~~~~~~~~-~~~~~~~~~- 111 (646)
T KOG0039|consen 36 EEEVRELIMSSISANW-LSLIKKQTEEYAALIMEELDPDHKG-YITNEDLEILLLQIPTLLFAILLSFA-NLSLLLSQP- 111 (646)
T ss_pred HHHHHHHHHHHHHhhh-hhhhhhhhhHHHHHhhhhccccccc-eeeecchhHHHHhchHHHHHHHHHHH-HHHhhhccc-
Confidence 4468899999999999 9999999999999999999888655 99999999999999988888777765 222111110
Q ss_pred ccccCCCCcceeeeeceEEecccccchHHHHHHHHHHHHHHHHHHhhhcccc------ccc-ccc---cccchhhHHHHH
Q 005360 84 SKRKMRSPRLFFSQRPVLVMAPLGIVTAIELTIAVMFVAFLIWSLANYLYVS------FGH-LHM---HKAGEKVWQAKF 153 (700)
Q Consensus 84 ~~~~~~~~~~~~~~~p~l~~~~~~i~tr~e~l~l~~~~~l~i~~~~~~~~~~------~~~-i~~---~~~~~~~~~~~l 153 (700)
.++..+.+..+.++++..+..+.+..++.+.+.+.+++++..|.+..|.+.+ ... +.. +..........+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lf~~~~~~y~~~~~~~~~g~~~~~~~~~~~~l~~~~~~ill 191 (646)
T KOG0039|consen 112 LKPTRRKPLLRNLVRMGAFLPNLWLRVWVLFLWLGLNVGLFTWRFLQYVYLGTRHILGLCLALARGSAETLNFNMALILL 191 (646)
T ss_pred cccccccccchheeeeeeeeccceEeeeeehHHHHHHHHHHHHHHHHHHhhhhhhhhhheeeeeccccccchhhHHHHHH
Confidence 1111122333445555555557888899999999999999999887776543 110 100 111111334456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHhhh
Q 005360 154 RSVSLRLGYIGNTCWAFLFFPVTRGSSILPLVGLTSESSIKYHIWLGHLSNALFALHAVGFLIYWAMTNQMA-EVLEWSE 232 (700)
Q Consensus 154 ~~va~R~G~ia~~~l~ll~l~~~Rnn~l~~ltG~~~e~~~~~Hrwlgr~~~~~~~iH~i~~~~~~~~~~~~~-~~~~w~~ 232 (700)
..+.+|.|+++....++..+|..||+.+.+++|++++.++.+|+|+|++++...++|+..++++|...+.+. +...|..
T Consensus 192 ~~~R~~~~~L~~~~fl~~~~p~~~n~~fh~l~g~~~~~~~~~H~w~~~~~~~~~~ih~~~~~~~~~~~~~~~~~~~~~~~ 271 (646)
T KOG0039|consen 192 PVCRNRLTFLRCSTFLFSYLPFDRNLNFHKLVALTIAVFILLHIWLHLVNFFPFLVHGLEYTISLASELFFLPKTYKWLL 271 (646)
T ss_pred HHHHHHHHHHHHhhhhheEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchhhhhhh
Confidence 788899999887777777799999999999999999999999999999999999999999999998876543 3455666
Q ss_pred cccchhHHHHHHHHHHHHHHhcchhHhhhchhHHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHHHHHhh
Q 005360 233 TYVSNVAGVIAIAIATVIWATSLPRFRRKMFELFFYTHHLYILYIIFYVLHVG-----PAYFCMILPGIFLFAVDRYLRF 307 (700)
Q Consensus 233 ~~~~~~~G~ia~~~l~~l~~~Sl~~iRr~~YE~F~~~H~l~~~~lv~~~~H~~-----~~~~~~i~~~i~l~~~dR~lR~ 307 (700)
.+..+++|+++++.+++|+++|++++||+.||.|+++|++++++++++++|+. ..|.+++.| +.+|++||++|+
T Consensus 272 ~~~~~~tGv~~~i~~~im~v~s~~~fRR~~~e~F~ytH~l~~v~~illi~hg~~~~~~~~w~~~~~p-~~ly~~dR~~r~ 350 (646)
T KOG0039|consen 272 LGVVGLTGVILLILMLIMFVLSLPFFRRRFYEAFWYTHHLYIVFYILLIIHGGFRLLGTTWMYIAVP-VLLYILDRILRF 350 (646)
T ss_pred cCCCcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHH-HHHHHHHHHHHH
Confidence 77788999999999999999999999999999999999999999999999987 566666666 889999999999
Q ss_pred hccccceEEEEEEEecCCeEEEEEeCCCCcccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeCCCchHHH
Q 005360 308 LQSRNRARLLSARALPCGVVELNFSKSPGLYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTEGSWTQKL 387 (700)
Q Consensus 308 ~~~~~~~~vvs~~~l~~~~~~l~~~~~~~~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L 387 (700)
.|++++++++++..+|+|++++++++|+.++|+||||+|+++|.++++|||||||+|+| ++++++++||+.||||++|
T Consensus 351 ~r~~~~~~i~~~~llp~~vi~L~~~Kp~~f~y~~Gqyifv~~p~ls~~qwHPFTItSsp--~dd~lsvhIk~~g~wT~~L 428 (646)
T KOG0039|consen 351 LRSQKNVKIAKVVLLPSDVLELIMSKPPGFKYKPGQYIFVNCPSLSKLEWHPFTITSAP--EDDFLSVHIKALGDWTEKL 428 (646)
T ss_pred HHHhcCceEEEEEEcCCCeEEEEEeCCCCCCCCCCCEEEEECccccccccCCceeecCC--CCCEEEEEEEecCcHHHHH
Confidence 99988899999999999999999999999999999999999999999999999999999 6789999999999999999
Q ss_pred Hhhhcc-----CC----CceEEEEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCC----------CC
Q 005360 388 YQQISS-----SV----DRLEVSVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNP----------DY 448 (700)
Q Consensus 388 ~~~~~~-----~~----~~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~----------~~ 448 (700)
++...+ +. +..++.+|||||++..+..++|++++|+||+|+||++|++++++.+.+.+. ..
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~i~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~~~~~~~ 508 (646)
T KOG0039|consen 429 RNAFSEVSQPPESDKSYPFPKILIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAPTSDYSDSL 508 (646)
T ss_pred HHHHhhhcccccccccccCceEEEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCccccccccc
Confidence 998873 11 156899999999999889999999999999999999999999998755222 23
Q ss_pred CCCeEEEEEEECCCCchhhHHHhcccCCCCcccCCCceEEEEEEeCCC
Q 005360 449 KIPNVHLICVFKKSADLSMLNIMLPVSDAPTELSKLQLQIEAYVTRDS 496 (700)
Q Consensus 449 ~~~~I~Liw~vR~~~~l~~~d~L~~~~~~~~~l~~~~l~i~iyvTr~~ 496 (700)
..++++++|..|+..+..|++.+.......+ ...-++++.|+|+..
T Consensus 509 ~~~~~~F~Wv~~~~~sf~wf~~~l~~v~~~~--~~~~~e~~~~~t~~~ 554 (646)
T KOG0039|consen 509 KLKKVYFYWVTREQRSFEWFKGLLTEVEEYD--SSGVIELHNYVTSSY 554 (646)
T ss_pred eecceeEEEEeccccchHHHHHHHHHHHHHH--hcCCchhheehhHhH
Confidence 5678999999999999999776554432111 222378888888754
No 5
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.1e-39 Score=331.90 Aligned_cols=317 Identities=19% Similarity=0.247 Sum_probs=230.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhh---hH-HHH
Q 005360 154 RSVSLRLGYIGNTCWAFLFFPVTRGSSILPLVGLTSESSIKYHIWLGHLSNALFALHAVGFLI-YWAMTNQ---MA-EVL 228 (700)
Q Consensus 154 ~~va~R~G~ia~~~l~ll~l~~~Rnn~l~~ltG~~~e~~~~~Hrwlgr~~~~~~~iH~i~~~~-~~~~~~~---~~-~~~ 228 (700)
+....-.|.+|.+.|.+.+++++|-+.+...+. +.|+.+++|||+|.+++++.+.|-+.+.+ .|..... .+ ..-
T Consensus 38 ~~~~qf~g~iaL~~msl~~~LA~R~~~iE~~~~-GlD~~Y~~HK~~sIlailL~l~H~~~~~~g~w~~~~~l~~k~a~v~ 116 (438)
T COG4097 38 LEFSQFLGFIALALMSLIFLLATRLPLIEAWFN-GLDKIYRFHKYTSILAILLLLAHNFILFIGNWLTLQLLNFKPAPVK 116 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHhhhhh-hhhHHhHHHHHHHHHHHHHHHHHHHHHHcCcchhcccccccccccc
Confidence 445566789999999999999999999887772 35799999999999999999999988543 2322100 00 000
Q ss_pred Hhhh--cccchhHHHHHHHHHHHHHHhcchhHhhhchhHHHHHHHHHHHHHHHHHHhhhhh--H-------HHHHH---H
Q 005360 229 EWSE--TYVSNVAGVIAIAIATVIWATSLPRFRRKMFELFFYTHHLYILYIIFYVLHVGPA--Y-------FCMIL---P 294 (700)
Q Consensus 229 ~w~~--~~~~~~~G~ia~~~l~~l~~~Sl~~iRr~~YE~F~~~H~l~~~~lv~~~~H~~~~--~-------~~~i~---~ 294 (700)
.|.. -....-.|..+...+..|++.+.. --+-.||.|.+.|.++++.+++..+|.-.. + ..|.. +
T Consensus 117 ~~l~~~~~s~~elG~~~~yi~~~lllV~~l-~~~i~Ye~WR~~H~lm~vvYilg~~H~~~l~~~~~~s~~a~swl~~~~a 195 (438)
T COG4097 117 PSLAGMWRSAKELGEWSAYIFIGLLLVWRL-WLNIGYENWRIAHRLMAVVYILGLLHSYGLLNYLYLSWPAVSWLVIAFA 195 (438)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHHhcchhHhhccHHHHHHHHHH
Confidence 0000 000112344444444444433321 235689999999999999888889997421 0 11211 1
Q ss_pred HHHHHHHHHH--Hhhhcc-ccceEEEEEEEecCCeEEEEEeCCCCcccCCCcEEEEEeCCC-CCceeeeeEeecCCCCCC
Q 005360 295 GIFLFAVDRY--LRFLQS-RNRARLLSARALPCGVVELNFSKSPGLYYNPTSILFVNVPSI-SKLQWHPFTVTSNCNMEQ 370 (700)
Q Consensus 295 ~i~l~~~dR~--lR~~~~-~~~~~vvs~~~l~~~~~~l~~~~~~~~~~~pGq~v~L~~p~~-s~~q~HPFTIas~p~~~~ 370 (700)
.+.+|+.-+. .+..++ +...++...+..+.++++++.....++.++|||++|++++.. ++...|||||+++. +.
T Consensus 196 llG~l~~iysi~~y~~~s~~y~~~vt~~~r~~~~t~eit~~l~~~~~~qaGQFAfLk~~~~~~~~~~HPFTIa~s~--~~ 273 (438)
T COG4097 196 LLGLLAAIYSIFGYFGRSFPYLGKVTAPQRGNVDTLEITIGLQGPWLYQAGQFAFLKIEIEEFRMRPHPFTIACSH--EG 273 (438)
T ss_pred HHHHHHHHHHHHHHhhcccccceEEechhhcCcchheeecccCCcccccCCceEEEEeccccccCCCCCeeeeeCC--CC
Confidence 1222222222 233333 456777888888899999999888888899999999999864 35678999999985 45
Q ss_pred CeEEEEEEeCCCchHHHHhhhccCCCceEEEEEccCCCCCCCCCCC-CeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCC
Q 005360 371 DKLSILVKTEGSWTQKLYQQISSSVDRLEVSVEGPYGPNSAHFLRH-ESLVMVSGGSGISPFISIVRELIFQSNNNPDYK 449 (700)
Q Consensus 371 ~~l~l~IK~~Gg~T~~L~~~~~~~~~~~~v~VeGPyG~~~~~~~~~-~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~ 449 (700)
++++|.||..||+|+.|++.++. +.++.||||||.+.. +++ ++-|+||||+||||++|+++.+..+..
T Consensus 274 sel~FsIK~LGD~Tk~l~dnLk~---G~k~~vdGPYG~F~~--~~g~~~QVWIAGGIGITPFis~l~~l~~~~s------ 342 (438)
T COG4097 274 SELRFSIKALGDFTKTLKDNLKV---GTKLEVDGPYGKFDF--ERGLNTQVWIAGGIGITPFISMLFTLAERKS------ 342 (438)
T ss_pred ceEEEEehhhhhhhHHHHHhccC---CceEEEecCcceeec--ccCCcccEEEecCcCcchHHHHHHhhccccc------
Confidence 58999999999999999997776 578999999999853 444 459999999999999999999877433
Q ss_pred CCeEEEEEEECCCCchhhHHHhcccCCCCcccCCCceEEEE
Q 005360 450 IPNVHLICVFKKSADLSMLNIMLPVSDAPTELSKLQLQIEA 490 (700)
Q Consensus 450 ~~~I~Liw~vR~~~~l~~~d~L~~~~~~~~~l~~~~l~i~i 490 (700)
.++|+|+|++|+.++..+.|||+..++ +.+++++|+
T Consensus 343 ~~~V~L~Y~~~n~e~~~y~~eLr~~~q-----kl~~~~lHi 378 (438)
T COG4097 343 DPPVHLFYCSRNWEEALYAEELRALAQ-----KLPNVVLHI 378 (438)
T ss_pred CCceEEEEEecCCchhHHHHHHHHHHh-----cCCCeEEEE
Confidence 678999999999999999999998764 456777777
No 6
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.97 E-value=2.6e-29 Score=253.57 Aligned_cols=154 Identities=32% Similarity=0.565 Sum_probs=125.3
Q ss_pred EEEEEec-CCeEEEEEeCCCCcccCCCcEEEEEeCCC-CCceeeeeEeecCCCCCCCeEEEEEEeCCCchHHHHhhhc--
Q 005360 317 LSARALP-CGVVELNFSKSPGLYYNPTSILFVNVPSI-SKLQWHPFTVTSNCNMEQDKLSILVKTEGSWTQKLYQQIS-- 392 (700)
Q Consensus 317 vs~~~l~-~~~~~l~~~~~~~~~~~pGq~v~L~~p~~-s~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~~~~~-- 392 (700)
+.++.++ +++++++++.+..+.++||||++|++|.. +.+++|||||+|.+.+++++++|+||..+|+|+++.+.+.
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~~G~~t~~~~~~~~~ 81 (210)
T cd06186 2 ATVELLPDSDVIRLTIPKPKPFKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAKKGFTTRLLRKALKS 81 (210)
T ss_pred eEEEEecCCCEEEEEEecCCCCccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEecCChHHHHHHHHHhC
Confidence 3566778 99999999988788999999999999987 7789999999999853258999999998666666766554
Q ss_pred -cCCCceEEEEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhh-HHH
Q 005360 393 -SSVDRLEVSVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSM-LNI 470 (700)
Q Consensus 393 -~~~~~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~-~d~ 470 (700)
+...+.++.++||||.+..+..++++++|||||+||||++|++++++++.+ + ....++++|+|++|+.+++.| .++
T Consensus 82 ~~~~~~~~v~v~GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~-~-~~~~~~v~l~w~~r~~~~~~~~~~~ 159 (210)
T cd06186 82 PGGGVSLKVLVEGPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSS-K-TSRTRRVKLVWVVRDREDLEWFLDE 159 (210)
T ss_pred cCCCceeEEEEECCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhh-c-cCCccEEEEEEEECCHHHhHHHHHH
Confidence 122358899999999986335678999999999999999999999987642 1 123678999999999999765 455
Q ss_pred hc
Q 005360 471 ML 472 (700)
Q Consensus 471 L~ 472 (700)
|.
T Consensus 160 l~ 161 (210)
T cd06186 160 LR 161 (210)
T ss_pred HH
Confidence 54
No 7
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.95 E-value=2.1e-26 Score=238.31 Aligned_cols=172 Identities=19% Similarity=0.210 Sum_probs=141.1
Q ss_pred ccccceEEEEEEEecCCeEEEEEeCCCC---cccCCCcEEEEEeCCCC--CceeeeeEeecCCCCCCCeEEEEEEeC--C
Q 005360 309 QSRNRARLLSARALPCGVVELNFSKSPG---LYYNPTSILFVNVPSIS--KLQWHPFTVTSNCNMEQDKLSILVKTE--G 381 (700)
Q Consensus 309 ~~~~~~~vvs~~~l~~~~~~l~~~~~~~---~~~~pGq~v~L~~p~~s--~~q~HPFTIas~p~~~~~~l~l~IK~~--G 381 (700)
|.++.+++.+++.+++++.+++++.+.. ..++||||+.|.++..+ ...+|||||+|.|. ++.++|.||.. |
T Consensus 4 ~~~~~~~v~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~--~~~l~~~ik~~~~G 81 (247)
T cd06184 4 RGFRPFVVARKVAESEDITSFYLEPADGGPLPPFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPN--GDYYRISVKREPGG 81 (247)
T ss_pred CCcEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEecCCCCCceeEEeEeccCCC--CCeEEEEEEEcCCC
Confidence 3455678999999999999999987643 67999999999997543 46889999999874 35899999987 9
Q ss_pred CchHHHHhhhccCCCceEEEEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECC
Q 005360 382 SWTQKLYQQISSSVDRLEVSVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKK 461 (700)
Q Consensus 382 g~T~~L~~~~~~~~~~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~ 461 (700)
..|+.|.+.++. ++++.|+||||.+..+...+++++|||||+||||++++++++.++.. .++++|+|++|+
T Consensus 82 ~~s~~l~~~~~~---Gd~v~i~gP~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~~~------~~~i~l~~~~r~ 152 (247)
T cd06184 82 LVSNYLHDNVKV---GDVLEVSAPAGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAEGP------GRPVTFIHAARN 152 (247)
T ss_pred cchHHHHhcCCC---CCEEEEEcCCCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhcCC------CCcEEEEEEcCc
Confidence 999999984332 36899999999975533367899999999999999999999986522 568999999999
Q ss_pred CCchhhHHHhcccCCCCcccCCCceEEEEEEeCCC
Q 005360 462 SADLSMLNIMLPVSDAPTELSKLQLQIEAYVTRDS 496 (700)
Q Consensus 462 ~~~l~~~d~L~~~~~~~~~l~~~~l~i~iyvTr~~ 496 (700)
++++.+.+++.++.. +..++++++++|++.
T Consensus 153 ~~~~~~~~~l~~l~~-----~~~~~~~~~~~s~~~ 182 (247)
T cd06184 153 SAVHAFRDELEELAA-----RLPNLKLHVFYSEPE 182 (247)
T ss_pred hhhHHHHHHHHHHHh-----hCCCeEEEEEECCCC
Confidence 999999999987653 346788988888764
No 8
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.95 E-value=1.2e-26 Score=236.65 Aligned_cols=201 Identities=16% Similarity=0.231 Sum_probs=157.8
Q ss_pred EEEEEEEecCCeEEEEEeCCCCcccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeC--CCchHHHHhhhc
Q 005360 315 RLLSARALPCGVVELNFSKSPGLYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTE--GSWTQKLYQQIS 392 (700)
Q Consensus 315 ~vvs~~~l~~~~~~l~~~~~~~~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~~L~~~~~ 392 (700)
++++++.+++++++++++.+...+++||||+.|.++.. ++|||||+|.|. +++.+++.||.. |.+|++|.+.++
T Consensus 2 ~v~~~~~~t~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySi~s~~~-~~~~l~~~vk~~~~G~~s~~l~~~l~ 77 (224)
T cd06189 2 KVESIEPLNDDVYRVRLKPPAPLDFLAGQYLDLLLDDG---DKRPFSIASAPH-EDGEIELHIRAVPGGSFSDYVFEELK 77 (224)
T ss_pred EEEEEEeCCCceEEEEEecCCCcccCCCCEEEEEcCCC---CceeeecccCCC-CCCeEEEEEEecCCCccHHHHHHhcc
Confidence 67888899999999999987778899999999999853 479999999985 467899999986 789999998554
Q ss_pred cCCCceEEEEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhhHHHhc
Q 005360 393 SSVDRLEVSVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSMLNIML 472 (700)
Q Consensus 393 ~~~~~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~~d~L~ 472 (700)
. +.++.++||||.+......+++++|||||+||||++++++++..+.. .++++|+|++|+.+++.+.++|.
T Consensus 78 ~---G~~v~i~gP~G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~~~------~~~v~l~~~~r~~~~~~~~~~l~ 148 (224)
T cd06189 78 E---NGLVRIEGPLGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQGS------KRPIHLYWGARTEEDLYLDELLE 148 (224)
T ss_pred C---CCEEEEecCCccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhcCC------CCCEEEEEecCChhhccCHHHHH
Confidence 3 36799999999986533457899999999999999999999987532 46899999999999999999988
Q ss_pred ccCCCCcccCCCceEEEEEEeCCCCCCCcchhhhhhhhccCCCCCCCCeEeEeCCcchHHH
Q 005360 473 PVSDAPTELSKLQLQIEAYVTRDSEQPKTDTLKELQSIWFKSNPSDSPVSGALGCNSWLWL 533 (700)
Q Consensus 473 ~~~~~~~~l~~~~l~i~iyvTr~~~~~~~~~~~~~~~~~~~p~~~~~~~~~vcGp~~~~~~ 533 (700)
++.. +..++++..+++++++++....+...+.+.......+...+.+|||++|+.-
T Consensus 149 ~l~~-----~~~~~~~~~~~s~~~~~~~g~~g~v~~~l~~~~~~~~~~~v~vCGp~~m~~~ 204 (224)
T cd06189 149 AWAE-----AHPNFTYVPVLSEPEEGWQGRTGLVHEAVLEDFPDLSDFDVYACGSPEMVYA 204 (224)
T ss_pred HHHH-----hCCCeEEEEEeCCCCcCCccccccHHHHHHhhccCccccEEEEECCHHHHHH
Confidence 6653 3467888888888765554333333332221111123467999999998853
No 9
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.94 E-value=7.3e-26 Score=232.13 Aligned_cols=167 Identities=17% Similarity=0.341 Sum_probs=136.3
Q ss_pred ceEEEEEEEecCCeEEEEEeCCC--CcccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeC--CCchHHHH
Q 005360 313 RARLLSARALPCGVVELNFSKSP--GLYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTE--GSWTQKLY 388 (700)
Q Consensus 313 ~~~vvs~~~l~~~~~~l~~~~~~--~~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~~L~ 388 (700)
++++.+++.+++++.+++++.++ .+.++||||+.|++|+.. ++|||||+|.|. +++.++|+||.. |.+|+.|.
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~-~~~~l~l~vk~~~~G~~s~~l~ 78 (232)
T cd06212 2 VGTVVAVEALTHDIRRLRLRLEEPEPIKFFAGQYVDITVPGTE--ETRSFSMANTPA-DPGRLEFIIKKYPGGLFSSFLD 78 (232)
T ss_pred ceEEEEEeecCCCeEEEEEEcCCCCcCCcCCCCeEEEEcCCCC--cccccccCCCCC-CCCEEEEEEEECCCCchhhHHh
Confidence 35788999999999999997543 468999999999998533 789999999885 457899999995 77899998
Q ss_pred hhhccCCCceEEEEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhhH
Q 005360 389 QQISSSVDRLEVSVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSML 468 (700)
Q Consensus 389 ~~~~~~~~~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~~ 468 (700)
+.++. +.++.++||||.+......+++++|||||+||||++++++++.+... .++++|+|++|+.+++.+.
T Consensus 79 ~~l~~---G~~v~i~gP~G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~~~~------~~~v~l~~~~r~~~~~~~~ 149 (232)
T cd06212 79 DGLAV---GDPVTVTGPYGTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAASGS------DRPVRFFYGARTARDLFYL 149 (232)
T ss_pred hcCCC---CCEEEEEcCcccceecCCCCCcEEEEecCcchhHHHHHHHHHHhcCC------CCcEEEEEeccchHHhccH
Confidence 74433 36799999999987543457899999999999999999999986532 4689999999999999999
Q ss_pred HHhcccCCCCcccCCCceEEEEEEeCCC
Q 005360 469 NIMLPVSDAPTELSKLQLQIEAYVTRDS 496 (700)
Q Consensus 469 d~L~~~~~~~~~l~~~~l~i~iyvTr~~ 496 (700)
+++.++.. +..+++++..++++.
T Consensus 150 ~~l~~l~~-----~~~~~~~~~~~s~~~ 172 (232)
T cd06212 150 EEIAALGE-----KIPDFTFIPALSESP 172 (232)
T ss_pred HHHHHHHH-----hCCCEEEEEEECCCC
Confidence 99886653 345677777777764
No 10
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.94 E-value=7.9e-26 Score=231.74 Aligned_cols=166 Identities=20% Similarity=0.301 Sum_probs=136.6
Q ss_pred EEEEEEEecCCeEEEEEeCCCC--cccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeC--CCchHHHHhh
Q 005360 315 RLLSARALPCGVVELNFSKSPG--LYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTE--GSWTQKLYQQ 390 (700)
Q Consensus 315 ~vvs~~~l~~~~~~l~~~~~~~--~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~~L~~~ 390 (700)
++++++.+++++.+++++.+.. +.+.||||+.|+++..+...+|||||+|.|. +++++|.||.. |.+|++|++.
T Consensus 2 ~v~~i~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~l~~~v~~~~~G~~s~~l~~~ 79 (231)
T cd06191 2 RVAEVRSETPDAVTIVFAVPGPLQYGFRPGQHVTLKLDFDGEELRRCYSLCSSPA--PDEISITVKRVPGGRVSNYLREH 79 (231)
T ss_pred EEEEEEecCCCcEEEEEeCCCCCCCCCCCCCeEEEEEecCCeEEeeeeeccCCCC--CCeEEEEEEECCCCccchHHHhc
Confidence 5778888999999999986544 4799999999999755556789999999874 57899999986 7899999864
Q ss_pred hccCCCceEEEEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhhHHH
Q 005360 391 ISSSVDRLEVSVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSMLNI 470 (700)
Q Consensus 391 ~~~~~~~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~~d~ 470 (700)
++. ++++.++||||++..+....++++|||||+||||++++++++.+... .++++|+|++|+.+++.+.|+
T Consensus 80 ~~~---Gd~v~i~gP~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~~------~~~v~l~~~~r~~~~~~~~~e 150 (231)
T cd06191 80 IQP---GMTVEVMGPQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTAP------ESDFTLIHSARTPADMIFAQE 150 (231)
T ss_pred CCC---CCEEEEeCCccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhcCC------CCCEEEEEecCCHHHHhHHHH
Confidence 433 37799999999975433456799999999999999999999876532 468999999999999999999
Q ss_pred hcccCCCCcccCCCceEEEEEEeCCC
Q 005360 471 MLPVSDAPTELSKLQLQIEAYVTRDS 496 (700)
Q Consensus 471 L~~~~~~~~~l~~~~l~i~iyvTr~~ 496 (700)
+.++.. +..+++++.++|+++
T Consensus 151 l~~l~~-----~~~~~~~~~~~s~~~ 171 (231)
T cd06191 151 LRELAD-----KPQRLRLLCIFTRET 171 (231)
T ss_pred HHHHHH-----hCCCeEEEEEECCCC
Confidence 986643 346789998998875
No 11
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.94 E-value=1.2e-25 Score=232.32 Aligned_cols=215 Identities=19% Similarity=0.279 Sum_probs=162.8
Q ss_pred HHHHHhhhcc-----ccceEEEEEEEecCCeEEEEEeCCCC-cccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEE
Q 005360 301 VDRYLRFLQS-----RNRARLLSARALPCGVVELNFSKSPG-LYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLS 374 (700)
Q Consensus 301 ~dR~lR~~~~-----~~~~~vvs~~~l~~~~~~l~~~~~~~-~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~ 374 (700)
+||.+|.++. ...+++++++.+++++.+++++.+.. ..++||||+.|.++..+...+|||||+|.|..+++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~i~l~~~~~~~~~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~ 81 (243)
T cd06216 2 VDFYLELINPLWSARELRARVVAVRPETADMVTLTLRPNRGWPGHRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTIT 81 (243)
T ss_pred chhhhhhcCCCcccceeEEEEEEEEEcCCCcEEEEEecCCCCCCcCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEE
Confidence 5888888664 23578889999999999999997654 47999999999997656667899999998731357899
Q ss_pred EEEEeC--CCchHHHHhhhccCCCceEEEEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCe
Q 005360 375 ILVKTE--GSWTQKLYQQISSSVDRLEVSVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPN 452 (700)
Q Consensus 375 l~IK~~--Gg~T~~L~~~~~~~~~~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~ 452 (700)
|.||.. |.+|++|++.++. ++++.++||||.+..+....+++++||||+||||++++++++.+.. ..++
T Consensus 82 ~~ik~~~~G~~s~~l~~~~~~---Gd~v~i~gP~G~f~l~~~~~~~~v~iagG~Giap~~s~l~~~~~~~------~~~~ 152 (243)
T cd06216 82 LTVKAQPDGLVSNWLVNHLAP---GDVVELSQPQGDFVLPDPLPPRLLLIAAGSGITPVMSMLRTLLARG------PTAD 152 (243)
T ss_pred EEEEEcCCCcchhHHHhcCCC---CCEEEEECCceeeecCCCCCCCEEEEecCccHhHHHHHHHHHHhcC------CCCC
Confidence 999997 8899999974433 3679999999997543334689999999999999999999997653 2568
Q ss_pred EEEEEEECCCCchhhHHHhcccCCCCcccCCCceEEEEEEeCCCCCCCcchhhhhhhhccCCCCCCCCeEeEeCCcchHH
Q 005360 453 VHLICVFKKSADLSMLNIMLPVSDAPTELSKLQLQIEAYVTRDSEQPKTDTLKELQSIWFKSNPSDSPVSGALGCNSWLW 532 (700)
Q Consensus 453 I~Liw~vR~~~~l~~~d~L~~~~~~~~~l~~~~l~i~iyvTr~~~~~~~~~~~~~~~~~~~p~~~~~~~~~vcGp~~~~~ 532 (700)
+.++|++|+.+++.+.++|.++.. +..+++++.++|++. ..........+... +.. +...+.+|||++|+.
T Consensus 153 i~l~~~~r~~~~~~~~~el~~l~~-----~~~~~~~~~~~s~~~-~~g~~~~~~l~~~~--~~~-~~~~vyvcGp~~m~~ 223 (243)
T cd06216 153 VVLLYYARTREDVIFADELRALAA-----QHPNLRLHLLYTREE-LDGRLSAAHLDAVV--PDL-ADRQVYACGPPGFLD 223 (243)
T ss_pred EEEEEEcCChhhhHHHHHHHHHHH-----hCCCeEEEEEEcCCc-cCCCCCHHHHHHhc--cCc-ccCeEEEECCHHHHH
Confidence 999999999999999999886542 345788888888751 11111111111111 212 346899999999975
Q ss_pred H
Q 005360 533 L 533 (700)
Q Consensus 533 ~ 533 (700)
.
T Consensus 224 ~ 224 (243)
T cd06216 224 A 224 (243)
T ss_pred H
Confidence 4
No 12
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.94 E-value=1.2e-25 Score=230.06 Aligned_cols=203 Identities=17% Similarity=0.206 Sum_probs=155.9
Q ss_pred EEEEEEEecCCeEEEEEeCCCC--cccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeC--CCchHHHHhh
Q 005360 315 RLLSARALPCGVVELNFSKSPG--LYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTE--GSWTQKLYQQ 390 (700)
Q Consensus 315 ~vvs~~~l~~~~~~l~~~~~~~--~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~~L~~~ 390 (700)
++++++.+++++.+++++.+.. ..++||||+.|++|..+...+|||||+|.|. +++.++|.||.. |.+|+.|.+.
T Consensus 2 ~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~-~~~~l~~~vk~~~~G~~s~~l~~~ 80 (231)
T cd06215 2 RCVKIIQETPDVKTFRFAAPDGSLFAYKPGQFLTLELEIDGETVYRAYTLSSSPS-RPDSLSITVKRVPGGLVSNWLHDN 80 (231)
T ss_pred eEEEEEEcCCCeEEEEEECCCCCcCCcCCCCeEEEEEecCCCeEEEeeecccCCC-CCCcEEEEEEEcCCCcchHHHHhc
Confidence 6788899999999999998765 6899999999999866666789999999885 456799999986 8899999864
Q ss_pred hccCCCceEEEEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhhHHH
Q 005360 391 ISSSVDRLEVSVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSMLNI 470 (700)
Q Consensus 391 ~~~~~~~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~~d~ 470 (700)
++. +.++.++||||.+.......++++|||||+||||++++++++.+... .++++|+|++|+++++.+.++
T Consensus 81 ~~~---G~~v~i~gP~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~~------~~~v~l~~~~r~~~~~~~~~~ 151 (231)
T cd06215 81 LKV---GDELWASGPAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDTRP------DADIVFIHSARSPADIIFADE 151 (231)
T ss_pred CCC---CCEEEEEcCcceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHhcCC------CCcEEEEEecCChhhhhHHHH
Confidence 433 36799999999975433346899999999999999999999876432 468999999999999999998
Q ss_pred hcccCCCCcccCCCceEEEEEEeCCCCC-CCcchhhhhh-hhc-cCCCCCCCCeEeEeCCcchHHH
Q 005360 471 MLPVSDAPTELSKLQLQIEAYVTRDSEQ-PKTDTLKELQ-SIW-FKSNPSDSPVSGALGCNSWLWL 533 (700)
Q Consensus 471 L~~~~~~~~~l~~~~l~i~iyvTr~~~~-~~~~~~~~~~-~~~-~~p~~~~~~~~~vcGp~~~~~~ 533 (700)
+.++.. +..++++++++|+++++ +....+.... .+. ..+.++ +..+.+|||++|+..
T Consensus 152 l~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~-~~~v~icGp~~m~~~ 211 (231)
T cd06215 152 LEELAR-----RHPNFRLHLILEQPAPGAWGGYRGRLNAELLALLVPDLK-ERTVFVCGPAGFMKA 211 (231)
T ss_pred HHHHHH-----HCCCeEEEEEEccCCCCcccccCCcCCHHHHHHhcCCcc-CCeEEEECCHHHHHH
Confidence 876653 34578999999987642 3222222211 111 112222 357889999999753
No 13
>PRK08051 fre FMN reductase; Validated
Probab=99.94 E-value=1.3e-25 Score=230.53 Aligned_cols=203 Identities=16% Similarity=0.138 Sum_probs=155.3
Q ss_pred ceEEEEEEEecCCeEEEEEeCCCCcccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeCC--CchHHHHhh
Q 005360 313 RARLLSARALPCGVVELNFSKSPGLYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTEG--SWTQKLYQQ 390 (700)
Q Consensus 313 ~~~vvs~~~l~~~~~~l~~~~~~~~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~G--g~T~~L~~~ 390 (700)
+.++.+++.+++++.+++++.++.+.++||||++++++.. +.|||||+|.|. +++.++|.||..+ ..+.++.+.
T Consensus 4 ~~~v~~i~~~~~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySias~p~-~~~~l~~~v~~~~~~~~~~~~~~~ 79 (232)
T PRK08051 4 SCKVTSVEAITDTVYRVRLVPEAPFSFRAGQYLMVVMGEK---DKRPFSIASTPR-EKGFIELHIGASELNLYAMAVMER 79 (232)
T ss_pred EEEEEEEecCCCCeEEEEEecCCCCccCCCCEEEEEcCCC---cceeecccCCCC-CCCcEEEEEEEcCCCcchHHHHHH
Confidence 4678899999999999999877778899999999999752 569999999885 4678999999954 356677655
Q ss_pred hccCCCceEEEEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhhHHH
Q 005360 391 ISSSVDRLEVSVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSMLNI 470 (700)
Q Consensus 391 ~~~~~~~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~~d~ 470 (700)
++. +.+|.++||||.+.......++++|||||+||||++++++++..... .++++|+|++|+.+++.+.++
T Consensus 80 l~~---G~~v~v~gP~G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~~~------~~~v~l~~g~r~~~~~~~~~e 150 (232)
T PRK08051 80 ILK---DGEIEVDIPHGDAWLREESERPLLLIAGGTGFSYARSILLTALAQGP------NRPITLYWGGREEDHLYDLDE 150 (232)
T ss_pred cCC---CCEEEEEcCCCceEccCCCCCcEEEEecCcCcchHHHHHHHHHHhCC------CCcEEEEEEeccHHHhhhhHH
Confidence 543 36899999999986543446789999999999999999999986532 468999999999999999999
Q ss_pred hcccCCCCcccCCCceEEEEEEeCCCCCCCcchhhhhhhhcc-CCCCCCCCeEeEeCCcchHHHH
Q 005360 471 MLPVSDAPTELSKLQLQIEAYVTRDSEQPKTDTLKELQSIWF-KSNPSDSPVSGALGCNSWLWLA 534 (700)
Q Consensus 471 L~~~~~~~~~l~~~~l~i~iyvTr~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~vcGp~~~~~~~ 534 (700)
|.++.. +..+++++..++++++.+....+...+.+.. .+.+ .+..+.+|||++|+...
T Consensus 151 l~~l~~-----~~~~~~~~~~~~~~~~~~~~~~g~v~~~l~~~~~~~-~~~~vyicGp~~m~~~v 209 (232)
T PRK08051 151 LEALAL-----KHPNLHFVPVVEQPEEGWQGKTGTVLTAVMQDFGSL-AEYDIYIAGRFEMAKIA 209 (232)
T ss_pred HHHHHH-----HCCCcEEEEEeCCCCCCcccceeeehHHHHhhccCc-ccCEEEEECCHHHHHHH
Confidence 987653 3357888887887665554333333333322 1222 23468999999998543
No 14
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.94 E-value=1.7e-25 Score=227.14 Aligned_cols=201 Identities=18% Similarity=0.231 Sum_probs=156.9
Q ss_pred EEEecCCeEEEEEeCCCCcccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeC--CCchHHHHhhhccCCC
Q 005360 319 ARALPCGVVELNFSKSPGLYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTE--GSWTQKLYQQISSSVD 396 (700)
Q Consensus 319 ~~~l~~~~~~l~~~~~~~~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~~L~~~~~~~~~ 396 (700)
++.+++++.+++++.+....++||||+.|.+|..+...+|||||+|.|. +++.++|.||.. |.+|++|.+...+
T Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~-~~~~~~l~vk~~~~G~~s~~l~~~~~G--- 78 (223)
T cd00322 3 TEDVTDDVRLFRLQLPNGFSFKPGQYVDLHLPGDGRGLRRAYSIASSPD-EEGELELTVKIVPGGPFSAWLHDLKPG--- 78 (223)
T ss_pred eEEecCCeEEEEEecCCCCCcCCCcEEEEEecCCCCcceeeeeccCCCC-CCCeEEEEEEEeCCCchhhHHhcCCCC---
Confidence 4567889999999987767899999999999876567899999999885 457899999997 9999999987444
Q ss_pred ceEEEEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhhHHHhcccCC
Q 005360 397 RLEVSVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSMLNIMLPVSD 476 (700)
Q Consensus 397 ~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~~d~L~~~~~ 476 (700)
.++.++||+|.+......+++++|||||+||||++++++++.+.. ..++++|+|++|+.+++.+.|++.++..
T Consensus 79 -~~v~i~gP~G~~~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~------~~~~v~l~~~~r~~~~~~~~~el~~l~~ 151 (223)
T cd00322 79 -DEVEVSGPGGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAADK------PGGEITLLYGARTPADLLFLDELEELAK 151 (223)
T ss_pred -CEEEEECCCcccccCcccCCcEEEEecCCchhHHHHHHHHHHhhC------CCCcEEEEEecCCHHHhhHHHHHHHHHH
Confidence 689999999998544456789999999999999999999998653 2568999999999999999999987653
Q ss_pred CCcccCCCceEEEEEEeCCCCCCCcchhhhh--hhhccCCCCCCCCeEeEeCCcchHHHHH
Q 005360 477 APTELSKLQLQIEAYVTRDSEQPKTDTLKEL--QSIWFKSNPSDSPVSGALGCNSWLWLAV 535 (700)
Q Consensus 477 ~~~~l~~~~l~i~iyvTr~~~~~~~~~~~~~--~~~~~~p~~~~~~~~~vcGp~~~~~~~~ 535 (700)
...+++++.+++++++++........ ..........+...+.+|||++|+....
T Consensus 152 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yvCGp~~m~~~~~ 207 (223)
T cd00322 152 -----EGPNFRLVLALSRESEAKLGPGGRIDREAEILALLPDDSGALVYICGPPAMAKAVR 207 (223)
T ss_pred -----hCCCeEEEEEecCCCCCCCcccceeeHHHHHHhhcccccCCEEEEECCHHHHHHHH
Confidence 45678898899887644332221111 1111112233467899999999975543
No 15
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.94 E-value=1.1e-25 Score=229.45 Aligned_cols=201 Identities=16% Similarity=0.220 Sum_probs=155.1
Q ss_pred EEEEEecCCeEEEEEeCCCCcccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeC--CCchHHHHhhhccC
Q 005360 317 LSARALPCGVVELNFSKSPGLYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTE--GSWTQKLYQQISSS 394 (700)
Q Consensus 317 vs~~~l~~~~~~l~~~~~~~~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~~L~~~~~~~ 394 (700)
++++.+++++.+++++.+....++||||+.|.+|..+. ++|||||+|.|. +++.++|.||.. |.+|++|++.++.
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~pGq~i~l~~~~~~~-~~r~ysi~s~~~-~~~~~~~~i~~~~~G~~s~~l~~~l~~- 78 (224)
T cd06187 2 VSVERLTHDIAVVRLQLDQPLPFWAGQYVNVTVPGRPR-TWRAYSPANPPN-EDGEIEFHVRAVPGGRVSNALHDELKV- 78 (224)
T ss_pred eeeeecCCCEEEEEEEeCCCCCcCCCceEEEEcCCCCC-cceeccccCCCC-CCCEEEEEEEeCCCCcchHHHhhcCcc-
Confidence 46778899999999998777889999999999986432 679999999875 457899999996 8899999984333
Q ss_pred CCceEEEEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhhHHHhccc
Q 005360 395 VDRLEVSVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSMLNIMLPV 474 (700)
Q Consensus 395 ~~~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~~d~L~~~ 474 (700)
+.++.++||||.+......++++++||||+||||++++++++..+. ..+++.|+|++|+.+++.+.+++.++
T Consensus 79 --G~~v~i~gP~G~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~~~------~~~~v~l~~~~~~~~~~~~~~~l~~~ 150 (224)
T cd06187 79 --GDRVRLSGPYGTFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALRRG------EPRPVHLFFGARTERDLYDLEGLLAL 150 (224)
T ss_pred --CCEEEEeCCccceEecCCCCCCEEEEecCcCHHHHHHHHHHHHhcC------CCCCEEEEEecCChhhhcChHHHHHH
Confidence 3679999999998653334789999999999999999999988643 24689999999999999999998866
Q ss_pred CCCCcccCCCceEEEEEEeCCCCCCCcchhhhhhhhccCCCCCCCCeEeEeCCcchHHH
Q 005360 475 SDAPTELSKLQLQIEAYVTRDSEQPKTDTLKELQSIWFKSNPSDSPVSGALGCNSWLWL 533 (700)
Q Consensus 475 ~~~~~~l~~~~l~i~iyvTr~~~~~~~~~~~~~~~~~~~p~~~~~~~~~vcGp~~~~~~ 533 (700)
.. +..+++++.+++++++++....+...+.+.....+.+...+.+|||++|+..
T Consensus 151 ~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~vcGp~~~~~~ 204 (224)
T cd06187 151 AA-----RHPWLRVVPVVSHEEGAWTGRRGLVTDVVGRDGPDWADHDIYICGPPAMVDA 204 (224)
T ss_pred HH-----hCCCeEEEEEeCCCCCccCCCcccHHHHHHHhccccccCEEEEECCHHHHHH
Confidence 43 4457888888887654444333333333322121234567899999999854
No 16
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.94 E-value=1.3e-25 Score=230.86 Aligned_cols=204 Identities=16% Similarity=0.231 Sum_probs=156.5
Q ss_pred ceEEEEEEEecCCeEEEEEeCCCC------cccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeC--CCch
Q 005360 313 RARLLSARALPCGVVELNFSKSPG------LYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTE--GSWT 384 (700)
Q Consensus 313 ~~~vvs~~~l~~~~~~l~~~~~~~------~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T 384 (700)
.+++++++.+++++++++++.++. ..++||||+.|++|. ..++|||||+|.|. +++.++|.||.. |.+|
T Consensus 3 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~--~~~~R~ySi~s~~~-~~~~l~~~i~~~~~G~~s 79 (236)
T cd06210 3 EAEIVAVDRVSSNVVRLRLQPDDAEGAGIAAEFVPGQFVEIEIPG--TDTRRSYSLANTPN-WDGRLEFLIRLLPGGAFS 79 (236)
T ss_pred eEEEEEEeecCCceEEEEEEeCCcccccccCCcCCCCEEEEEcCC--CccceecccCCCCC-CCCEEEEEEEEcCCCccc
Confidence 467889999999999999997654 679999999999985 34689999999885 467899999985 7799
Q ss_pred HHHHhhhccCCCceEEEEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCc
Q 005360 385 QKLYQQISSSVDRLEVSVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSAD 464 (700)
Q Consensus 385 ~~L~~~~~~~~~~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~ 464 (700)
+.|.+.++. +.++.++||||++..+....++++|||||+||||++++++++.+... .++++|+|++|+.++
T Consensus 80 ~~l~~~~~~---Gd~v~i~gP~G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~------~~~v~l~~~~r~~~~ 150 (236)
T cd06210 80 TYLETRAKV---GQRLNLRGPLGAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAEWGE------PQEARLFFGVNTEAE 150 (236)
T ss_pred hhhhhCcCC---CCEEEEecCcceeeecCCCCccEEEEccCcchhHHHHHHHHHHhcCC------CceEEEEEecCCHHH
Confidence 999984433 36799999999975433356789999999999999999999876532 468999999999999
Q ss_pred hhhHHHhcccCCCCcccCCCceEEEEEEeCCCCCCCcchhhhhhhhcc-CCCCCCCCeEeEeCCcchHHH
Q 005360 465 LSMLNIMLPVSDAPTELSKLQLQIEAYVTRDSEQPKTDTLKELQSIWF-KSNPSDSPVSGALGCNSWLWL 533 (700)
Q Consensus 465 l~~~d~L~~~~~~~~~l~~~~l~i~iyvTr~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~vcGp~~~~~~ 533 (700)
+.+.+++.++.. +..+++++..++++++++....+.....+.. .+.......+.+|||++|+..
T Consensus 151 ~~~~~~l~~l~~-----~~~~~~~~~~~s~~~~~~~~~~g~~~~~l~~~l~~~~~~~~vyicGp~~m~~~ 215 (236)
T cd06210 151 LFYLDELKRLAD-----SLPNLTVRICVWRPGGEWEGYRGTVVDALREDLASSDAKPDIYLCGPPGMVDA 215 (236)
T ss_pred hhhHHHHHHHHH-----hCCCeEEEEEEcCCCCCcCCccCcHHHHHHHhhcccCCCcEEEEeCCHHHHHH
Confidence 999999987653 3457899999988654444333322222221 112223456789999999853
No 17
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.93 E-value=2.5e-25 Score=228.08 Aligned_cols=204 Identities=17% Similarity=0.224 Sum_probs=154.4
Q ss_pred EEEEEecCCeEEEEEeCCCCcccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeC--CCchHHHHhhhccC
Q 005360 317 LSARALPCGVVELNFSKSPGLYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTE--GSWTQKLYQQISSS 394 (700)
Q Consensus 317 vs~~~l~~~~~~l~~~~~~~~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~~L~~~~~~~ 394 (700)
++++.+++++++++++.+....++||||+.|++|..+ ..|||||+|.|. +.+.++|.||.. |.+|++|++.++.
T Consensus 2 ~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~-~~~~~~~~vk~~~~G~~s~~l~~~~~~- 77 (232)
T cd06190 2 VDVRELTHDVAEFRFALDGPADFLPGQYALLALPGVE--GARAYSMANLAN-ASGEWEFIIKRKPGGAASNALFDNLEP- 77 (232)
T ss_pred CceEEcCCCEEEEEEEcCCccccCCCCEEEEECCCCC--cccCccCCcCCC-CCCEEEEEEEEcCCCcchHHHhhcCCC-
Confidence 4567889999999999877788999999999998643 679999999875 457899999985 8899999985433
Q ss_pred CCceEEEEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhhHHHhccc
Q 005360 395 VDRLEVSVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSMLNIMLPV 474 (700)
Q Consensus 395 ~~~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~~d~L~~~ 474 (700)
+.++.|+||||.+.......++++|||||+||||++++++++.+... ....+++|+|++|+.+++.+.|++.++
T Consensus 78 --g~~v~v~gP~G~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~~----~~~~~v~l~~~~r~~~~~~~~~el~~l 151 (232)
T cd06190 78 --GDELELDGPYGLAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSPY----LSDRPVDLFYGGRTPSDLCALDELSAL 151 (232)
T ss_pred --CCEEEEECCcccceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhccc----CCCCeEEEEEeecCHHHHhhHHHHHHH
Confidence 36799999999986533456799999999999999999999986421 125689999999999999999999876
Q ss_pred CCCCcccCCCceEEEEEEeCCCCC----CCcchhhhhhhhcc-CCCCCCCCeEeEeCCcchHHHHH
Q 005360 475 SDAPTELSKLQLQIEAYVTRDSEQ----PKTDTLKELQSIWF-KSNPSDSPVSGALGCNSWLWLAV 535 (700)
Q Consensus 475 ~~~~~~l~~~~l~i~iyvTr~~~~----~~~~~~~~~~~~~~-~p~~~~~~~~~vcGp~~~~~~~~ 535 (700)
.. ...++++++.+|++.+. +....+...+.+.. .+...++..+.+|||++|+..+.
T Consensus 152 ~~-----~~~~~~~~~~~s~~~~~~~~~~~~~~g~v~~~l~~~~~~~~~~~~vyiCGp~~m~~~v~ 212 (232)
T cd06190 152 VA-----LGARLRVTPAVSDAGSGSAAGWDGPTGFVHEVVEATLGDRLAEFEFYFAGPPPMVDAVQ 212 (232)
T ss_pred HH-----hCCCEEEEEEeCCCCCCcCCCccCCcCcHHHHHHhhccCCccccEEEEECCHHHHHHHH
Confidence 53 34578888888876532 22222222222211 11112356889999999986543
No 18
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.93 E-value=2.2e-25 Score=228.75 Aligned_cols=207 Identities=14% Similarity=0.156 Sum_probs=156.2
Q ss_pred cceEEEEEEEecCCeEEEEEeCCCC--cccCCCcEEEEEeCCC-CCceeeeeEeecCCCCCCCeEEEEEEeC--CCchHH
Q 005360 312 NRARLLSARALPCGVVELNFSKSPG--LYYNPTSILFVNVPSI-SKLQWHPFTVTSNCNMEQDKLSILVKTE--GSWTQK 386 (700)
Q Consensus 312 ~~~~vvs~~~l~~~~~~l~~~~~~~--~~~~pGq~v~L~~p~~-s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~~ 386 (700)
+++++++++.+++++.+++++.++. ..++||||+.+++|.. +...+|||||++.|. +++.++|.||.. |..|+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~-~~~~l~l~v~~~~~G~~s~~ 80 (235)
T cd06217 2 RVLRVTEIIQETPTVKTFRLAVPDGVPPPFLAGQHVDLRLTAIDGYTAQRSYSIASSPT-QRGRVELTVKRVPGGEVSPY 80 (235)
T ss_pred ceEEEEEEEecCCCeEEEEEECCCCCcCCcCCcCeEEEEEecCCCceeeeeecccCCCC-CCCeEEEEEEEcCCCcchHH
Confidence 4678999999999999999998766 6899999999999743 345679999999875 456899999985 668999
Q ss_pred HHhhhccCCCceEEEEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchh
Q 005360 387 LYQQISSSVDRLEVSVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLS 466 (700)
Q Consensus 387 L~~~~~~~~~~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~ 466 (700)
|++.++. ++++.++||||.+.......+++++||||+||||++++++++.+... .++++++|++|+.+++.
T Consensus 81 l~~~l~~---Gd~v~i~gP~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~~------~~~i~l~~~~r~~~~~~ 151 (235)
T cd06217 81 LHDEVKV---GDLLEVRGPIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLGW------PVPFRLLYSARTAEDVI 151 (235)
T ss_pred HHhcCCC---CCEEEEeCCceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHhcCC------CceEEEEEecCCHHHhh
Confidence 9875433 36799999999975422346899999999999999999999886532 56899999999999999
Q ss_pred hHHHhcccCCCCcccCCCceEEEEEEeCCC-CCCCcchhhhhhhh-ccCCCCCCCCeEeEeCCcchHHH
Q 005360 467 MLNIMLPVSDAPTELSKLQLQIEAYVTRDS-EQPKTDTLKELQSI-WFKSNPSDSPVSGALGCNSWLWL 533 (700)
Q Consensus 467 ~~d~L~~~~~~~~~l~~~~l~i~iyvTr~~-~~~~~~~~~~~~~~-~~~p~~~~~~~~~vcGp~~~~~~ 533 (700)
+.+++.++.. +..+++++.++|++. +.+....+...... .....+.+...+.+|||++|+..
T Consensus 152 ~~~el~~~~~-----~~~~~~~~~~~s~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~v~icGp~~m~~~ 215 (235)
T cd06217 152 FRDELEQLAR-----RHPNLHVTEALTRAAPADWLGPAGRITADLIAELVPPLAGRRVYVCGPPAFVEA 215 (235)
T ss_pred HHHHHHHHHH-----HCCCeEEEEEeCCCCCCCcCCcCcEeCHHHHHhhCCCccCCEEEEECCHHHHHH
Confidence 9999876653 345688888888862 22222222221111 11111224468999999999853
No 19
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.93 E-value=3.7e-25 Score=228.85 Aligned_cols=213 Identities=17% Similarity=0.193 Sum_probs=177.3
Q ss_pred ccceEEEEEEEecCCeEEEEEeCCC---CcccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEe--CCCchH
Q 005360 311 RNRARLLSARALPCGVVELNFSKSP---GLYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKT--EGSWTQ 385 (700)
Q Consensus 311 ~~~~~vvs~~~l~~~~~~l~~~~~~---~~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~--~Gg~T~ 385 (700)
+..+++++.+.+++|+.+++|..+. ......|||+++..|..+....||||+.|++. +.+.++++||. .|.+|+
T Consensus 51 ~~~~~l~~k~~~shdt~~f~f~lp~~~~~l~lp~g~hv~~~~~i~g~~vvRpYTPvs~~~-~~g~~~l~VK~Y~~G~mS~ 129 (286)
T KOG0534|consen 51 YYPFRLIDKTELSHDTSLFRFVLPSADHVLGLPIGQHVVLKAPIGGKLVVRPYTPVSLDD-DKGYFDLVVKVYPKGKMSQ 129 (286)
T ss_pred eEEEEEEEEEeccCCceeEEEecCCchhccCcccceEEEEEecCCCcEEEEecCCccCcc-ccceEEEEEEeccCCcccH
Confidence 4567899999999999999988763 36689999999999987788999999999986 36799999999 799999
Q ss_pred HHHhhhccCCCceEEEEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCch
Q 005360 386 KLYQQISSSVDRLEVSVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADL 465 (700)
Q Consensus 386 ~L~~~~~~~~~~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l 465 (700)
+|.++..+ +.+.++||.|+...+...++++.|||||+||||+++++++++...+ +.+++.|++++++++|+
T Consensus 130 ~l~~LkiG----d~ve~rGP~G~~~~~~~~~~~l~miAgGtGItPmlqii~~il~~~~-----d~tki~lly~N~te~DI 200 (286)
T KOG0534|consen 130 HLDSLKIG----DTVEFRGPIGEFKYDPQKAKHLGMIAGGTGITPMLQLIRAILKDPE-----DTTKISLLYANKTEDDI 200 (286)
T ss_pred HHhcCCCC----CEEEEecCccceEecCCCcceEEEEecccchhhHHHHHHHHhcCCC-----CCcEEEEEEecCCcccc
Confidence 99999877 8899999999986555568999999999999999999999997654 36789999999999999
Q ss_pred hhHHHhcccCCCCcccCCCceEEEEEEeCCCCCCCcchhhhhhh-hc-cCCCCCC-CCeEeEeCCcchHHHHHHH
Q 005360 466 SMLNIMLPVSDAPTELSKLQLQIEAYVTRDSEQPKTDTLKELQS-IW-FKSNPSD-SPVSGALGCNSWLWLAVVI 537 (700)
Q Consensus 466 ~~~d~L~~~~~~~~~l~~~~l~i~iyvTr~~~~~~~~~~~~~~~-~~-~~p~~~~-~~~~~vcGp~~~~~~~~~~ 537 (700)
.+.++|++++.+ ...+++++.++++++++|+...+.+.+. +. .-|.+.+ +..++||||++|+-.++..
T Consensus 201 Llr~eL~~la~~----~p~rf~~~y~v~~~~~~w~~~~g~It~~~i~~~l~~~~~~~~~~liCGPp~m~~~~~~~ 271 (286)
T KOG0534|consen 201 LLREELEELASK----YPERFKVWYVVDQPPEIWDGSVGFITKDLIKEHLPPPKEGETLVLICGPPPMINGAAQG 271 (286)
T ss_pred chHHHHHHHHhh----CcceEEEEEEEcCCcccccCccCccCHHHHHhhCCCCCCCCeEEEEECCHHHHhHHHHH
Confidence 999999887641 2338999999999998888777643333 22 2344444 6899999999999755543
No 20
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.93 E-value=4.4e-25 Score=227.75 Aligned_cols=202 Identities=14% Similarity=0.199 Sum_probs=155.4
Q ss_pred EEEEEEecCCeEEEEEeCCCCcccCCCcEEEEEeCCC-CCceeeeeEeecCCCCCCCeEEEEEEeC--CCchHHHHhhhc
Q 005360 316 LLSARALPCGVVELNFSKSPGLYYNPTSILFVNVPSI-SKLQWHPFTVTSNCNMEQDKLSILVKTE--GSWTQKLYQQIS 392 (700)
Q Consensus 316 vvs~~~l~~~~~~l~~~~~~~~~~~pGq~v~L~~p~~-s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~~L~~~~~ 392 (700)
+++++.+++++++++++.+....++||||+.|+++.. +...+|||||+|.+. ++.++|.||.. |..|+.|.++..
T Consensus 2 v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~--~~~i~~~i~~~~~G~~s~~l~~l~~ 79 (241)
T cd06195 2 VLKRRDWTDDLFSFRVTRDIPFRFQAGQFTKLGLPNDDGKLVRRAYSIASAPY--EENLEFYIILVPDGPLTPRLFKLKP 79 (241)
T ss_pred eEEEEEcCCCEEEEEEcCCCCCccCCCCeEEEeccCCCCCeeeecccccCCCC--CCeEEEEEEEecCCCCchHHhcCCC
Confidence 5678889999999999987767899999999999875 566889999999874 37899999974 899999987554
Q ss_pred cCCCceEEEEE-ccCCCCCCCCC-CCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhhHHH
Q 005360 393 SSVDRLEVSVE-GPYGPNSAHFL-RHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSMLNI 470 (700)
Q Consensus 393 ~~~~~~~v~Ve-GPyG~~~~~~~-~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~~d~ 470 (700)
+ .++.++ ||+|++..+.. ..++++|||||+||||++++++++..... .++++|+|++|+++|+.+.|+
T Consensus 80 G----d~v~v~~gP~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~~------~~~v~l~~~~r~~~d~~~~~e 149 (241)
T cd06195 80 G----DTIYVGKKPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWER------FDKIVLVHGVRYAEELAYQDE 149 (241)
T ss_pred C----CEEEECcCCCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhCC------CCcEEEEEccCCHHHhhhHHH
Confidence 4 679999 99999754333 46899999999999999999999975432 568999999999999999999
Q ss_pred hcccCCCCcccCCCceEEEEEEeCCCCCCCcchhhhhh-----hhc---cCCCCCCCCeEeEeCCcchHHHH
Q 005360 471 MLPVSDAPTELSKLQLQIEAYVTRDSEQPKTDTLKELQ-----SIW---FKSNPSDSPVSGALGCNSWLWLA 534 (700)
Q Consensus 471 L~~~~~~~~~l~~~~l~i~iyvTr~~~~~~~~~~~~~~-----~~~---~~p~~~~~~~~~vcGp~~~~~~~ 534 (700)
|.++.. ....+++++.++|++++.+. ..+...+ .+. ..+.+.+...+.+|||++|+...
T Consensus 150 l~~l~~----~~~~~~~~~~~~s~~~~~~~-~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp~~m~~~~ 216 (241)
T cd06195 150 IEALAK----QYNGKFRYVPIVSREKENGA-LTGRIPDLIESGELEEHAGLPLDPETSHVMLCGNPQMIDDT 216 (241)
T ss_pred HHHHHh----hcCCCEEEEEEECcCCccCC-CceEhHHhhhhchhhHhhCCCCCcccCEEEEeCCHHHHHHH
Confidence 987653 11457899999998765432 1111111 110 11112245688999999998554
No 21
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.93 E-value=4e-25 Score=225.09 Aligned_cols=198 Identities=16% Similarity=0.219 Sum_probs=152.5
Q ss_pred EEEEEecCCeEEEEEeCCCCcccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeC--CCchHHHHhhhccC
Q 005360 317 LSARALPCGVVELNFSKSPGLYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTE--GSWTQKLYQQISSS 394 (700)
Q Consensus 317 vs~~~l~~~~~~l~~~~~~~~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~~L~~~~~~~ 394 (700)
.+++.+++++++++++.++...|+||||+.|+++. ...|||||+|.|. +++.++|+||.. |.+|+.|.+.++.
T Consensus 2 ~~~~~~~~~~~~i~l~~~~~~~~~pGQ~v~l~~~~---~~~r~ySi~s~~~-~~~~~~~~i~~~~~G~~s~~l~~~~~~- 76 (222)
T cd06194 2 VSLQRLSPDVLRVRLEPDRPLPYLPGQYVNLRRAG---GLARSYSPTSLPD-GDNELEFHIRRKPNGAFSGWLGEEARP- 76 (222)
T ss_pred ceeeecCCCEEEEEEecCCCCCcCCCCEEEEEcCC---CCceeeecCCCCC-CCCEEEEEEEeccCCccchHHHhccCC-
Confidence 46778899999999998777889999999999985 2569999999985 447899999985 7799999985433
Q ss_pred CCceEEEEEccCCCCCCCC-CCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhhHHHhcc
Q 005360 395 VDRLEVSVEGPYGPNSAHF-LRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSMLNIMLP 473 (700)
Q Consensus 395 ~~~~~v~VeGPyG~~~~~~-~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~~d~L~~ 473 (700)
++++.++||||.+.... ...+++++||||+||||+++++++++.+.. .++++|+|++|+.+++.+.|++.+
T Consensus 77 --G~~v~i~gP~G~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~~------~~~v~l~~~~r~~~~~~~~~el~~ 148 (222)
T cd06194 77 --GHALRLQGPFGQAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQGH------QGEIRLVHGARDPDDLYLHPALLW 148 (222)
T ss_pred --CCEEEEecCcCCeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhcCC------CccEEEEEecCChhhccCHHHHHH
Confidence 36799999999986532 456899999999999999999999876532 568999999999999999999986
Q ss_pred cCCCCcccCCCceEEEEEEeCCCCCCCc-chhhhhhhhccCCCCCCCCeEeEeCCcchHHHHH
Q 005360 474 VSDAPTELSKLQLQIEAYVTRDSEQPKT-DTLKELQSIWFKSNPSDSPVSGALGCNSWLWLAV 535 (700)
Q Consensus 474 ~~~~~~~l~~~~l~i~iyvTr~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~vcGp~~~~~~~~ 535 (700)
+.. +..+++++.+++++++++.. ......+.. +.+.+...+.+|||++|+....
T Consensus 149 l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~vyicGp~~m~~~~~ 203 (222)
T cd06194 149 LAR-----EHPNFRYIPCVSEGSQGDPRVRAGRIAAHL---PPLTRDDVVYLCGAPSMVNAVR 203 (222)
T ss_pred HHH-----HCCCeEEEEEEccCCCCCcccccchhhhhh---ccccCCCEEEEeCCHHHHHHHH
Confidence 642 34578888888886533211 111111111 1233457899999999986544
No 22
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.93 E-value=6e-25 Score=224.71 Aligned_cols=202 Identities=14% Similarity=0.210 Sum_probs=154.8
Q ss_pred eEEEEEEEecCCeEEEEEeCCCCcccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeC--CCchHHHHhhh
Q 005360 314 ARLLSARALPCGVVELNFSKSPGLYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTE--GSWTQKLYQQI 391 (700)
Q Consensus 314 ~~vvs~~~l~~~~~~l~~~~~~~~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~~L~~~~ 391 (700)
.++++++.+++++++++++.++...++||||+.|+++... ..|||||+|.|. +++.++|.||.. |.+|++|++.+
T Consensus 3 ~~v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~~~l~~~~~~--~~r~ysi~s~~~-~~~~l~~~vk~~~~G~~s~~l~~~l 79 (227)
T cd06213 3 GTIVAQERLTHDIVRLTVQLDRPIAYKAGQYAELTLPGLP--AARSYSFANAPQ-GDGQLSFHIRKVPGGAFSGWLFGAD 79 (227)
T ss_pred EEEEEEeecCCCEEEEEEecCCCCCcCCCCEEEEEeCCCC--cccccccCCCCC-CCCEEEEEEEECCCCcchHHHHhcC
Confidence 5788899999999999999876678999999999998533 679999999885 467899999985 88999998765
Q ss_pred ccCCCceEEEEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhhHHHh
Q 005360 392 SSSVDRLEVSVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSMLNIM 471 (700)
Q Consensus 392 ~~~~~~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~~d~L 471 (700)
+. ++++.++||||.+... ...++++|||||+||||++++++++.++.. .++++++|++|+.+++.+.|++
T Consensus 80 ~~---G~~v~i~gP~G~~~~~-~~~~~~lliagG~GiaP~~~~~~~~~~~~~------~~~i~l~~~~r~~~~~~~~~~l 149 (227)
T cd06213 80 RT---GERLTVRGPFGDFWLR-PGDAPILCIAGGSGLAPILAILEQARAAGT------KRDVTLLFGARTQRDLYALDEI 149 (227)
T ss_pred CC---CCEEEEeCCCcceEeC-CCCCcEEEEecccchhHHHHHHHHHHhcCC------CCcEEEEEeeCCHHHhccHHHH
Confidence 44 3679999999998642 345799999999999999999999876532 4679999999999999998988
Q ss_pred cccCCCCcccCCCceEEEEEEeCCCC--CCCcchhhhhhhhccCCCCCCCCeEeEeCCcchHHHH
Q 005360 472 LPVSDAPTELSKLQLQIEAYVTRDSE--QPKTDTLKELQSIWFKSNPSDSPVSGALGCNSWLWLA 534 (700)
Q Consensus 472 ~~~~~~~~~l~~~~l~i~iyvTr~~~--~~~~~~~~~~~~~~~~p~~~~~~~~~vcGp~~~~~~~ 534 (700)
.++.. ....+++++.+++++.+ ++....+...+.+.... .+...+.+|||++|+...
T Consensus 150 ~~l~~----~~~~~~~~~~~~s~~~~~~~~~g~~g~v~~~l~~~~--~~~~~v~~CGp~~~~~~~ 208 (227)
T cd06213 150 AAIAA----RWRGRFRFIPVLSEEPADSSWKGARGLVTEHIAEVL--LAATEAYLCGPPAMIDAA 208 (227)
T ss_pred HHHHH----hccCCeEEEEEecCCCCCCCccCCcccHHHHHHhhc--cCCCEEEEECCHHHHHHH
Confidence 86542 12457888888887642 22322222222221111 235689999999998543
No 23
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.93 E-value=4.8e-25 Score=225.51 Aligned_cols=202 Identities=16% Similarity=0.222 Sum_probs=155.2
Q ss_pred ceEEEEEEEecCCeEEEEEeCCC--CcccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeC--CCchHHHH
Q 005360 313 RARLLSARALPCGVVELNFSKSP--GLYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTE--GSWTQKLY 388 (700)
Q Consensus 313 ~~~vvs~~~l~~~~~~l~~~~~~--~~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~~L~ 388 (700)
..++++++.+++++.+++++.+. ...++||||+.|++|+. .++|||||+|.|. ++.++|+||.. |..|+.|+
T Consensus 3 ~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~--~~~r~ysi~s~~~--~~~i~~~i~~~~~G~~s~~l~ 78 (228)
T cd06209 3 EATVTEVERLSDSTIGLTLELDEAGALAFLPGQYVNLQVPGT--DETRSYSFSSAPG--DPRLEFLIRLLPGGAMSSYLR 78 (228)
T ss_pred eEEEEEEEEcCCCeEEEEEEcCCCCcCccCCCCEEEEEeCCC--CcccccccccCCC--CCeEEEEEEEcCCCcchhhHH
Confidence 45788999999999999999766 57899999999999853 3679999999875 37899999984 77899999
Q ss_pred hhhccCCCceEEEEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhhH
Q 005360 389 QQISSSVDRLEVSVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSML 468 (700)
Q Consensus 389 ~~~~~~~~~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~~ 468 (700)
+.++. +.++.++||+|.+... ...++++|||||+||||++++++++.... ..++++|+|++|+.+++.+.
T Consensus 79 ~~l~~---G~~v~v~gP~G~~~~~-~~~~~~vlia~GtGIaP~~~ll~~~~~~~------~~~~v~l~~~~r~~~~~~~~ 148 (228)
T cd06209 79 DRAQP---GDRLTLTGPLGSFYLR-EVKRPLLMLAGGTGLAPFLSMLDVLAEDG------SAHPVHLVYGVTRDADLVEL 148 (228)
T ss_pred hccCC---CCEEEEECCcccceec-CCCCeEEEEEcccCHhHHHHHHHHHHhcC------CCCcEEEEEecCCHHHhccH
Confidence 84433 3679999999998653 34478999999999999999999987653 25689999999999999999
Q ss_pred HHhcccCCCCcccCCCceEEEEEEeCCCCCCCcchhhhhhhhccCCCCCCCCeEeEeCCcchHHHH
Q 005360 469 NIMLPVSDAPTELSKLQLQIEAYVTRDSEQPKTDTLKELQSIWFKSNPSDSPVSGALGCNSWLWLA 534 (700)
Q Consensus 469 d~L~~~~~~~~~l~~~~l~i~iyvTr~~~~~~~~~~~~~~~~~~~p~~~~~~~~~vcGp~~~~~~~ 534 (700)
|++.++.. +..+++++.++|++++ +....+...+.+.....+.++..+.+|||++|+...
T Consensus 149 ~~l~~l~~-----~~~~~~~~~~~s~~~~-~~~~~g~v~~~~~~~~~~~~~~~v~icGp~~m~~~~ 208 (228)
T cd06209 149 DRLEALAE-----RLPGFSFRTVVADPDS-WHPRKGYVTDHLEAEDLNDGDVDVYLCGPPPMVDAV 208 (228)
T ss_pred HHHHHHHH-----hCCCeEEEEEEcCCCc-cCCCcCCccHHHHHhhccCCCcEEEEeCCHHHHHHH
Confidence 99887653 3457899999998653 332222222222111112245678999999998553
No 24
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.93 E-value=6.6e-25 Score=228.27 Aligned_cols=197 Identities=15% Similarity=0.237 Sum_probs=148.3
Q ss_pred EEEEEecCCeEEEEEeCCC----CcccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeCCCchHHHHhhhc
Q 005360 317 LSARALPCGVVELNFSKSP----GLYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTEGSWTQKLYQQIS 392 (700)
Q Consensus 317 vs~~~l~~~~~~l~~~~~~----~~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~~~~~ 392 (700)
.+++.+++++.+++++.++ ..+++||||+.|.+|..+ .||||+++.|. +++.++|.||..|.+|+.|++...
T Consensus 2 ~~i~~~t~~v~~~~l~~~~~~~~~~~~~pGQ~i~l~~~~~~---~~pySi~s~~~-~~~~l~~~Ik~~G~~S~~L~~l~~ 77 (253)
T cd06221 2 VEVVDETEDIKTFTLRLEDDDEELFTFKPGQFVMLSLPGVG---EAPISISSDPT-RRGPLELTIRRVGRVTEALHELKP 77 (253)
T ss_pred ceEEeccCCceEEEEEeCCCccccCCcCCCCEEEEEcCCCC---ccceEecCCCC-CCCeEEEEEEeCChhhHHHHcCCC
Confidence 4667788887777766543 378999999999998643 39999999985 467899999999999999986543
Q ss_pred cCCCceEEEEEccCCCCCCCCC-CCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhhHHHh
Q 005360 393 SSVDRLEVSVEGPYGPNSAHFL-RHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSMLNIM 471 (700)
Q Consensus 393 ~~~~~~~v~VeGPyG~~~~~~~-~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~~d~L 471 (700)
+ .++.++||||....... ..+++||||||+||||+++++++++++.+ ..++++|+|++|+.+++.+.|+|
T Consensus 78 G----~~v~i~gP~G~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~~-----~~~~i~Li~~~r~~~~~~~~~~L 148 (253)
T cd06221 78 G----DTVGLRGPFGNGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNRE-----DYGKVTLLYGARTPEDLLFKEEL 148 (253)
T ss_pred C----CEEEEECCcCCCcccccccCCeEEEEccccchhHHHHHHHHHHhccc-----cCCcEEEEEecCChHHcchHHHH
Confidence 3 67999999999643222 56899999999999999999999987532 24689999999999999999999
Q ss_pred cccCCCCcccCCCceEEEEEEeCCCCCCCcchhhhhhhhcc-CCCCCCCCeEeEeCCcchHHH
Q 005360 472 LPVSDAPTELSKLQLQIEAYVTRDSEQPKTDTLKELQSIWF-KSNPSDSPVSGALGCNSWLWL 533 (700)
Q Consensus 472 ~~~~~~~~~l~~~~l~i~iyvTr~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~vcGp~~~~~~ 533 (700)
.++.. + .+++++++++++.+++....+...+.+.. ...+ ....+.+|||++|+..
T Consensus 149 ~~l~~-----~-~~~~~~~~~s~~~~~~~~~~g~v~~~l~~~~~~~-~~~~vyicGp~~mv~~ 204 (253)
T cd06221 149 KEWAK-----R-SDVEVILTVDRAEEGWTGNVGLVTDLLPELTLDP-DNTVAIVCGPPIMMRF 204 (253)
T ss_pred HHHHh-----c-CCeEEEEEeCCCCCCccCCccccchhHHhcCCCc-CCcEEEEECCHHHHHH
Confidence 87653 3 57888888887654433222222222221 1112 4567899999999743
No 25
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.93 E-value=7.6e-25 Score=225.62 Aligned_cols=207 Identities=14% Similarity=0.161 Sum_probs=156.1
Q ss_pred cceEEEEEEEecCCeEEEEEeCCCCc--ccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeC--CCchHHH
Q 005360 312 NRARLLSARALPCGVVELNFSKSPGL--YYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTE--GSWTQKL 387 (700)
Q Consensus 312 ~~~~vvs~~~l~~~~~~l~~~~~~~~--~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~~L 387 (700)
...++.+++.+++++.+++++.+... .++||||+.|++|.. .+.|||||+|.+. +++.++|.||.. |..|+.|
T Consensus 7 ~~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~--~~~r~ySi~s~~~-~~~~l~l~i~~~~~G~~s~~l 83 (238)
T cd06211 7 FEGTVVEIEDLTPTIKGVRLKLDEPEEIEFQAGQYVNLQAPGY--EGTRAFSIASSPS-DAGEIELHIRLVPGGIATTYV 83 (238)
T ss_pred EeEEEEEEEecCCCEEEEEEEcCCCCcCccCCCCeEEEEcCCC--CCccccccCCCCC-CCCEEEEEEEECCCCcchhhH
Confidence 35688899999999999999876654 799999999999853 3679999999885 467899999986 8899999
Q ss_pred HhhhccCCCceEEEEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhh
Q 005360 388 YQQISSSVDRLEVSVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSM 467 (700)
Q Consensus 388 ~~~~~~~~~~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~ 467 (700)
++.++. +.++.++||+|++.......++++|||||+||||+++++++++++.. .+++.|+|++|+.+++.+
T Consensus 84 ~~~l~~---G~~v~i~gP~G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~~------~~~v~l~~~~r~~~~~~~ 154 (238)
T cd06211 84 HKQLKE---GDELEISGPYGDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLERGD------TRKITLFFGARTRAELYY 154 (238)
T ss_pred hhcCCC---CCEEEEECCccceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcCC------CCcEEEEEecCChhhhcc
Confidence 864433 36799999999986533345799999999999999999999886532 368999999999999998
Q ss_pred HHHhcccCCCCcccCCCceEEEEEEeCCCC--CCCcchhhhhhhhcc-CCCCCCCCeEeEeCCcchHHHHH
Q 005360 468 LNIMLPVSDAPTELSKLQLQIEAYVTRDSE--QPKTDTLKELQSIWF-KSNPSDSPVSGALGCNSWLWLAV 535 (700)
Q Consensus 468 ~d~L~~~~~~~~~l~~~~l~i~iyvTr~~~--~~~~~~~~~~~~~~~-~p~~~~~~~~~vcGp~~~~~~~~ 535 (700)
.|++.++.. ...+++++..++++.+ .+....+...+.+.. .+...+...+.+|||++|+....
T Consensus 155 ~~~l~~l~~-----~~~~~~~~~~~s~~~~~~~~~~~~g~v~~~l~~~~~~~~~~~~vyvCGp~~m~~~~~ 220 (238)
T cd06211 155 LDEFEALEK-----DHPNFKYVPALSREPPESNWKGFTGFVHDAAKKHFKNDFRGHKAYLCGPPPMIDACI 220 (238)
T ss_pred HHHHHHHHH-----hCCCeEEEEEECCCCCCcCcccccCcHHHHHHHhcccccccCEEEEECCHHHHHHHH
Confidence 999886643 3457888888887642 222222222222211 11112346789999999986543
No 26
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.93 E-value=9e-25 Score=231.51 Aligned_cols=204 Identities=19% Similarity=0.244 Sum_probs=150.2
Q ss_pred cceEEEEEEEecCCeEEEEEe--CC---CCcccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeCCCchHH
Q 005360 312 NRARLLSARALPCGVVELNFS--KS---PGLYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTEGSWTQK 386 (700)
Q Consensus 312 ~~~~vvs~~~l~~~~~~l~~~--~~---~~~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~ 386 (700)
+..++++++.+++|+..++++ .+ +.+.++||||+.|++|..+ .||||++|.|. +++.++|.||..|.+|+.
T Consensus 6 ~~~~V~~~~~~t~d~~~~~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~---~~pySias~p~-~~~~l~l~Ik~~G~~S~~ 81 (289)
T PRK08345 6 HDAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGVG---EVPISICSSPT-RKGFFELCIRRAGRVTTV 81 (289)
T ss_pred eeEEEEEEEecCCCCCEEEEEEeCccccCCCCcCCCCEEEEEcCCCC---ceeeEecCCCC-CCCEEEEEEEeCChHHHH
Confidence 457899999999985555444 33 2367999999999998633 38999999885 467899999999999999
Q ss_pred HHhhhccCCCceEEEEEccCCCCCC-CCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCch
Q 005360 387 LYQQISSSVDRLEVSVEGPYGPNSA-HFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADL 465 (700)
Q Consensus 387 L~~~~~~~~~~~~v~VeGPyG~~~~-~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l 465 (700)
|.+...+ +++.++||||.... +....++++|||||+||||+++++++++++.. ..++++|+|++|+.+|+
T Consensus 82 L~~l~~G----d~v~v~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~~-----~~~~v~l~~~~r~~~d~ 152 (289)
T PRK08345 82 IHRLKEG----DIVGVRGPYGNGFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNRW-----KYGNITLIYGAKYYEDL 152 (289)
T ss_pred HHhCCCC----CEEEEeCCCCCCCCcccccCceEEEEecccchhHHHHHHHHHHhcCC-----CCCcEEEEEecCCHHHh
Confidence 9865444 67999999998543 22234689999999999999999999876531 24689999999999999
Q ss_pred hhHHHhcccCCCCcccCCCceEEEEEEeCCCCCCCc-----------chhhhhhhhcc-CCCCCCCCeEeEeCCcchHHH
Q 005360 466 SMLNIMLPVSDAPTELSKLQLQIEAYVTRDSEQPKT-----------DTLKELQSIWF-KSNPSDSPVSGALGCNSWLWL 533 (700)
Q Consensus 466 ~~~d~L~~~~~~~~~l~~~~l~i~iyvTr~~~~~~~-----------~~~~~~~~~~~-~p~~~~~~~~~vcGp~~~~~~ 533 (700)
.+.|||.++.. +..+++++.+++++++.+.. ..+...+.+.. .+.+ +...+.+|||++|+..
T Consensus 153 ~~~deL~~l~~-----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~-~~~~vyiCGP~~m~~~ 226 (289)
T PRK08345 153 LFYDELIKDLA-----EAENVKIIQSVTRDPEWPGCHGLPQGFIERVCKGVVTDLFREANTDP-KNTYAAICGPPVMYKF 226 (289)
T ss_pred hHHHHHHHHHh-----cCCCEEEEEEecCCCCCcCccccccccccccccCchhhhhhhcCCCc-cccEEEEECCHHHHHH
Confidence 99999987643 45678999999986422110 01112222221 1212 3467899999999855
Q ss_pred H
Q 005360 534 A 534 (700)
Q Consensus 534 ~ 534 (700)
.
T Consensus 227 v 227 (289)
T PRK08345 227 V 227 (289)
T ss_pred H
Confidence 3
No 27
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.93 E-value=9.2e-25 Score=221.55 Aligned_cols=188 Identities=18% Similarity=0.252 Sum_probs=141.6
Q ss_pred CCeEEEEEeCCCC-cccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeCCCchHHHHhhhccCCCceEEEE
Q 005360 324 CGVVELNFSKSPG-LYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTEGSWTQKLYQQISSSVDRLEVSV 402 (700)
Q Consensus 324 ~~~~~l~~~~~~~-~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~~~~~~~~~~~~v~V 402 (700)
.++.+++++.++. ..++||||+.|+++..+..++|||||+|.|. +++.++|.||..|++|+.|++.++. ++++.+
T Consensus 7 ~~~~~i~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~-~~~~l~l~vk~~G~~t~~l~~~l~~---G~~v~i 82 (216)
T cd06198 7 RPTTTLTLEPRGPALGHRAGQFAFLRFDASGWEEPHPFTISSAPD-PDGRLRFTIKALGDYTRRLAERLKP---GTRVTV 82 (216)
T ss_pred cceEEEEEeeCCCCCCcCCCCEEEEEeCCCCCCCCCCcEEecCCC-CCCeEEEEEEeCChHHHHHHHhCCC---CCEEEE
Confidence 4677788876554 6899999999999876667899999999875 4579999999999999999954443 367999
Q ss_pred EccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhhHHHhcccCCCCcccC
Q 005360 403 EGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSMLNIMLPVSDAPTELS 482 (700)
Q Consensus 403 eGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~~d~L~~~~~~~~~l~ 482 (700)
+||||.+..+ ..+++++|||||+||||++++++++.++.. .++++|+|++|+.+++.+.|+|.++.. +
T Consensus 83 ~gP~G~~~~~-~~~~~~vlia~GtGiap~~~~l~~~~~~~~------~~~v~l~~~~r~~~~~~~~~~l~~l~~-----~ 150 (216)
T cd06198 83 EGPYGRFTFD-DRRARQIWIAGGIGITPFLALLEALAARGD------ARPVTLFYCVRDPEDAVFLDELRALAA-----A 150 (216)
T ss_pred ECCCCCCccc-ccCceEEEEccccCHHHHHHHHHHHHhcCC------CceEEEEEEECCHHHhhhHHHHHHHHH-----h
Confidence 9999997653 237899999999999999999999876532 468999999999999999999987652 2
Q ss_pred CCceEEEEEEeCCCCCCCcchhhhhhhhccCCCCCCCCeEeEeCCcchHHH
Q 005360 483 KLQLQIEAYVTRDSEQPKTDTLKELQSIWFKSNPSDSPVSGALGCNSWLWL 533 (700)
Q Consensus 483 ~~~l~i~iyvTr~~~~~~~~~~~~~~~~~~~p~~~~~~~~~vcGp~~~~~~ 533 (700)
. ++++++..+++. .+....... . ...+ +.+...+.+|||++|+.-
T Consensus 151 ~-~~~~~~~~~~~~-~~~~~~~~~-~--~~~~-~~~~~~vyicGp~~m~~~ 195 (216)
T cd06198 151 A-GVVLHVIDSPSD-GRLTLEQLV-R--ALVP-DLADADVWFCGPPGMADA 195 (216)
T ss_pred c-CeEEEEEeCCCC-cccchhhhh-h--hcCC-CcCCCeEEEECcHHHHHH
Confidence 2 667776555433 221111111 0 1111 224568899999999854
No 28
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.93 E-value=1.3e-24 Score=221.26 Aligned_cols=178 Identities=20% Similarity=0.287 Sum_probs=139.4
Q ss_pred EEEecCCeEEEEEeCCCC---cccCCCcEEEEEeCCC----------------CCceeeeeEeecCCCCC--CCeEEEEE
Q 005360 319 ARALPCGVVELNFSKSPG---LYYNPTSILFVNVPSI----------------SKLQWHPFTVTSNCNME--QDKLSILV 377 (700)
Q Consensus 319 ~~~l~~~~~~l~~~~~~~---~~~~pGq~v~L~~p~~----------------s~~q~HPFTIas~p~~~--~~~l~l~I 377 (700)
.+.+++|+.+++++.+++ ..|+||||+.|++|.. +...+|||||+|.|.++ .+.++|.|
T Consensus 3 ~~~~s~~v~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~v 82 (220)
T cd06197 3 SEVITPTLTRFTFELSPPDVVGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEITV 82 (220)
T ss_pred ceecccceeEEEEEecCCccccccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEEE
Confidence 467789999999988766 7899999999999752 12356899999998643 27899999
Q ss_pred EeCCCchHHHHhhhccC-CCceEEEEEccCCCCCCCC---CCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeE
Q 005360 378 KTEGSWTQKLYQQISSS-VDRLEVSVEGPYGPNSAHF---LRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNV 453 (700)
Q Consensus 378 K~~Gg~T~~L~~~~~~~-~~~~~v~VeGPyG~~~~~~---~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I 453 (700)
|+.|++|++|++..... ..+.++.++||||.+.... ..+++++|||||+||||++++++++++..+ ..+++
T Consensus 83 k~~G~~T~~L~~~~~~~~~~G~~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~sil~~l~~~~~-----~~~~v 157 (220)
T cd06197 83 RKKGPVTGFLFQVARRLREQGLEVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAMLRAILSSRN-----TTWDI 157 (220)
T ss_pred EeCCCCCHHHHHhhhcccCCCceEEEEecCCcccCCcccccCCceEEEEecccchhhHHHHHHHHHhccc-----CCCcE
Confidence 99999999999986531 2247899999999985432 346899999999999999999999986421 24689
Q ss_pred EEEEEECCCCchhhHHHhcccCCCCcccCCCceEEEEEEeCCCCCCCcchhhhhhhhccCCCCCCCCeEeEeCCcchHHH
Q 005360 454 HLICVFKKSADLSMLNIMLPVSDAPTELSKLQLQIEAYVTRDSEQPKTDTLKELQSIWFKSNPSDSPVSGALGCNSWLWL 533 (700)
Q Consensus 454 ~Liw~vR~~~~l~~~d~L~~~~~~~~~l~~~~l~i~iyvTr~~~~~~~~~~~~~~~~~~~p~~~~~~~~~vcGp~~~~~~ 533 (700)
+|+|++|+.+++.+.|+|.+.. +...+++.+.|. .+.+|||++||-.
T Consensus 158 ~l~~~~r~~~~~~~~~el~~~~-------~~~~~~~~~~~~--------------------------~v~~CGP~~m~~~ 204 (220)
T cd06197 158 TLLWSLREDDLPLVMDTLVRFP-------GLPVSTTLFITS--------------------------EVYLCGPPALEKA 204 (220)
T ss_pred EEEEEecchhhHHHHHHHHhcc-------CCceEEEEEEec--------------------------cEEEECcHHHHHH
Confidence 9999999999999999996532 123344444442 4789999999864
Q ss_pred H
Q 005360 534 A 534 (700)
Q Consensus 534 ~ 534 (700)
+
T Consensus 205 ~ 205 (220)
T cd06197 205 V 205 (220)
T ss_pred H
Confidence 4
No 29
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.93 E-value=1.2e-24 Score=235.67 Aligned_cols=205 Identities=18% Similarity=0.227 Sum_probs=157.3
Q ss_pred cceEEEEEEEecCCeEEEEEeCC---CCcccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEe--CCCchHH
Q 005360 312 NRARLLSARALPCGVVELNFSKS---PGLYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKT--EGSWTQK 386 (700)
Q Consensus 312 ~~~~vvs~~~l~~~~~~l~~~~~---~~~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~--~Gg~T~~ 386 (700)
...++++++.+++++.+++++.+ +.+.|+||||+.|++|+. ..+|||||+|.|. +++.++|+||. .|.+|+.
T Consensus 107 ~~~~V~~i~~~s~di~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~--~~~R~ySias~p~-~~~~l~~~ik~~~~G~~s~~ 183 (340)
T PRK11872 107 ISGVVTAVELVSETTAILHLDASAHGRQLDFLPGQYARLQIPGT--DDWRSYSFANRPN-ATNQLQFLIRLLPDGVMSNY 183 (340)
T ss_pred eeEEEEEEEecCCCeEEEEEEcCCCCCccCcCCCCEEEEEeCCC--CceeecccCCCCC-CCCeEEEEEEECCCCcchhh
Confidence 35789999999999999999865 457899999999999853 3589999999885 56789999998 4668999
Q ss_pred HHhhhccCCCceEEEEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchh
Q 005360 387 LYQQISSSVDRLEVSVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLS 466 (700)
Q Consensus 387 L~~~~~~~~~~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~ 466 (700)
|++.++. +.++.++||||.+... ...++++|||||+||||++++++++.++.. .++++|+|++|+.+|+.
T Consensus 184 L~~~l~~---G~~v~i~gP~G~f~l~-~~~~~~vliagGtGiaP~~s~l~~~~~~~~------~~~v~l~~g~r~~~dl~ 253 (340)
T PRK11872 184 LRERCQV---GDEILFEAPLGAFYLR-EVERPLVFVAGGTGLSAFLGMLDELAEQGC------SPPVHLYYGVRHAADLC 253 (340)
T ss_pred HhhCCCC---CCEEEEEcCcceeEeC-CCCCcEEEEeCCcCccHHHHHHHHHHHcCC------CCcEEEEEecCChHHhc
Confidence 9875443 3679999999998653 345789999999999999999999986532 46899999999999999
Q ss_pred hHHHhcccCCCCcccCCCceEEEEEEeCCCCCCCcchhhhhhhhccCCCCCCCCeEeEeCCcchHHHH
Q 005360 467 MLNIMLPVSDAPTELSKLQLQIEAYVTRDSEQPKTDTLKELQSIWFKSNPSDSPVSGALGCNSWLWLA 534 (700)
Q Consensus 467 ~~d~L~~~~~~~~~l~~~~l~i~iyvTr~~~~~~~~~~~~~~~~~~~p~~~~~~~~~vcGp~~~~~~~ 534 (700)
+.++|.++.. +..+++++..+++++++|....+.+.+.+.......+...+.+|||++|+..+
T Consensus 254 ~~~el~~~~~-----~~~~~~~~~~~s~~~~~~~g~~g~v~~~l~~~~l~~~~~~vy~CGp~~mv~~~ 316 (340)
T PRK11872 254 ELQRLAAYAE-----RLPNFRYHPVVSKASADWQGKRGYIHEHFDKAQLRDQAFDMYLCGPPPMVEAV 316 (340)
T ss_pred cHHHHHHHHH-----HCCCcEEEEEEeCCCCcCCCceeeccHHHHHhhcCcCCCEEEEeCCHHHHHHH
Confidence 9999987653 34578999888887656554333222222111011123468999999998543
No 30
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.92 E-value=4.6e-24 Score=236.29 Aligned_cols=170 Identities=16% Similarity=0.217 Sum_probs=137.8
Q ss_pred ccceEEEEEEEecCCeEEEEEeCCC---CcccCCCcEEEEEeCCCC--CceeeeeEeecCCCCCCCeEEEEEEeC--CCc
Q 005360 311 RNRARLLSARALPCGVVELNFSKSP---GLYYNPTSILFVNVPSIS--KLQWHPFTVTSNCNMEQDKLSILVKTE--GSW 383 (700)
Q Consensus 311 ~~~~~vvs~~~l~~~~~~l~~~~~~---~~~~~pGq~v~L~~p~~s--~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~ 383 (700)
++.+++++++.+++++.+++++.++ ...++||||+.|.++..+ ..++|||||+|.|. ++.++|.||.. |.+
T Consensus 154 ~~~~~V~~~~~~t~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~--~~~l~~~Vk~~~~G~~ 231 (399)
T PRK13289 154 WRDFRVVKKVPESEVITSFYLEPVDGGPVADFKPGQYLGVRLDPEGEEYQEIRQYSLSDAPN--GKYYRISVKREAGGKV 231 (399)
T ss_pred cEEEEEEEEEECCCCEEEEEEEcCCCCcCCCCCCCCeEEEEEecCCccccceeEEEeeeCCC--CCeEEEEEEECCCCee
Confidence 3456899999999999999998653 257999999999986433 23579999999874 56899999986 999
Q ss_pred hHHHHhhhccCCCceEEEEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCC
Q 005360 384 TQKLYQQISSSVDRLEVSVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSA 463 (700)
Q Consensus 384 T~~L~~~~~~~~~~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~ 463 (700)
|..|++.++. ++++.+.||||.+..+....++++|||||+||||++|++++++.+.. .++++|+|++|+.+
T Consensus 232 S~~L~~~l~~---Gd~v~v~gP~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~------~~~v~l~~~~r~~~ 302 (399)
T PRK13289 232 SNYLHDHVNV---GDVLELAAPAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQP------KRPVHFIHAARNGG 302 (399)
T ss_pred hHHHhhcCCC---CCEEEEEcCccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcCC------CCCEEEEEEeCChh
Confidence 9999984443 37799999999986543356799999999999999999999876532 56899999999999
Q ss_pred chhhHHHhcccCCCCcccCCCceEEEEEEeCCC
Q 005360 464 DLSMLNIMLPVSDAPTELSKLQLQIEAYVTRDS 496 (700)
Q Consensus 464 ~l~~~d~L~~~~~~~~~l~~~~l~i~iyvTr~~ 496 (700)
++.+.++|.++.. +..+++++.+++++.
T Consensus 303 ~~~~~~eL~~l~~-----~~~~~~~~~~~s~~~ 330 (399)
T PRK13289 303 VHAFRDEVEALAA-----RHPNLKAHTWYREPT 330 (399)
T ss_pred hchHHHHHHHHHH-----hCCCcEEEEEECCCc
Confidence 9999999987653 344788888887653
No 31
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.92 E-value=1.7e-24 Score=221.89 Aligned_cols=204 Identities=16% Similarity=0.220 Sum_probs=155.3
Q ss_pred EEEEEEEecCCeEEEEEeCCC---CcccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeC--CCchHHHHh
Q 005360 315 RLLSARALPCGVVELNFSKSP---GLYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTE--GSWTQKLYQ 389 (700)
Q Consensus 315 ~vvs~~~l~~~~~~l~~~~~~---~~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~~L~~ 389 (700)
++.+++.+++++.+++++.++ ...++||||+.|.+|..+....||||++|.+. +++.++|.||.. |..|+.|.+
T Consensus 2 ~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~-~~~~~~~~v~~~~~G~~s~~l~~ 80 (234)
T cd06183 2 KLVSKEDISHDTRIFRFELPSPDQVLGLPVGQHVELKAPDDGEQVVRPYTPISPDD-DKGYFDLLIKIYPGGKMSQYLHS 80 (234)
T ss_pred EeEEeEecCCCEEEEEEECCCCCCcCCCCcccEEEEEecCCCcccccccccccCCC-cCCEEEEEEEECCCCcchhHHhc
Confidence 677888999999999998765 36799999999999876667889999999875 456899999985 889999987
Q ss_pred hhccCCCceEEEEEccCCCCCCCCCCC-CeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhhH
Q 005360 390 QISSSVDRLEVSVEGPYGPNSAHFLRH-ESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSML 468 (700)
Q Consensus 390 ~~~~~~~~~~v~VeGPyG~~~~~~~~~-~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~~ 468 (700)
...+ .++.++||||.+....... ++++|||||+||||+++++++++.+.+ ..++|+|+|++|+.+++.+.
T Consensus 81 ~~~G----~~v~i~gP~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~-----~~~~i~l~~~~r~~~~~~~~ 151 (234)
T cd06183 81 LKPG----DTVEIRGPFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDPE-----DKTKISLLYANRTEEDILLR 151 (234)
T ss_pred CCCC----CEEEEECCccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhCcC-----cCcEEEEEEecCCHHHhhhH
Confidence 5443 6799999999975432333 799999999999999999999976521 25689999999999999999
Q ss_pred HHhcccCCCCcccCCCceEEEEEEeCCCCCCCcchhhhhhhh-cc-CCC-CCCCCeEeEeCCcchHH
Q 005360 469 NIMLPVSDAPTELSKLQLQIEAYVTRDSEQPKTDTLKELQSI-WF-KSN-PSDSPVSGALGCNSWLW 532 (700)
Q Consensus 469 d~L~~~~~~~~~l~~~~l~i~iyvTr~~~~~~~~~~~~~~~~-~~-~p~-~~~~~~~~vcGp~~~~~ 532 (700)
++|.++.. ....+++++.++|++++.+....+...+.+ .. -+. +.+...+.+|||++|+.
T Consensus 152 ~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~icGp~~~~~ 214 (234)
T cd06183 152 EELDELAK----KHPDRFKVHYVLSRPPEGWKGGVGFITKEMIKEHLPPPPSEDTLVLVCGPPPMIE 214 (234)
T ss_pred HHHHHHHH----hCcccEEEEEEEcCCCcCCccccceECHHHHHHhCCCCCCCCeEEEEECCHHHHH
Confidence 99887652 113578888888886544433233222211 11 111 23456889999999985
No 32
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.92 E-value=4.7e-24 Score=232.40 Aligned_cols=170 Identities=16% Similarity=0.261 Sum_probs=135.4
Q ss_pred cceEEEEEEEecCCeEEEEEeCCCC----cccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeC--CCchH
Q 005360 312 NRARLLSARALPCGVVELNFSKSPG----LYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTE--GSWTQ 385 (700)
Q Consensus 312 ~~~~vvs~~~l~~~~~~l~~~~~~~----~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~ 385 (700)
+.+++.+++.+++++.+++++.+.. +.++||||+.|+++..+....|||||+|.| +++.++|.||.. |.+|.
T Consensus 2 ~~~~V~~i~~~t~~~~~l~l~~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p--~~~~l~i~vk~~~~G~~S~ 79 (352)
T TIGR02160 2 HRLTVAEVERLTADAVAISFEIPDELAEDYRFAPGQHLTLRREVDGEELRRSYSICSAP--APGEIRVAVKKIPGGLFST 79 (352)
T ss_pred eEeEEEEEEecCCCeEEEEEeCCccccccCCCCCCCeEEEEEecCCcEeeeeccccCCC--CCCcEEEEEEEeCCCcchH
Confidence 3568889999999999999986542 579999999999974445567999999987 357899999984 66899
Q ss_pred HHHhhhccCCCceEEEEEccCCCCCCCCC--CCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCC
Q 005360 386 KLYQQISSSVDRLEVSVEGPYGPNSAHFL--RHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSA 463 (700)
Q Consensus 386 ~L~~~~~~~~~~~~v~VeGPyG~~~~~~~--~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~ 463 (700)
+|++.++. ++++.+.||+|++..+.. ..++++|||||+||||++|++++++.+.. .++++|+|++|+++
T Consensus 80 ~l~~~l~~---Gd~v~v~gP~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~~------~~~v~l~~~~r~~~ 150 (352)
T TIGR02160 80 WANDEIRP---GDTLEVMAPQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAEP------RSTFTLVYGNRRTA 150 (352)
T ss_pred HHHhcCCC---CCEEEEeCCceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhcCC------CceEEEEEEeCCHH
Confidence 99865544 367999999999754322 34789999999999999999999876532 46899999999999
Q ss_pred chhhHHHhcccCCCCcccCCCceEEEEEEeCCC
Q 005360 464 DLSMLNIMLPVSDAPTELSKLQLQIEAYVTRDS 496 (700)
Q Consensus 464 ~l~~~d~L~~~~~~~~~l~~~~l~i~iyvTr~~ 496 (700)
++.+.++|.++.. ....+++++..+|+++
T Consensus 151 d~~~~~el~~l~~----~~~~~~~~~~~~s~~~ 179 (352)
T TIGR02160 151 SVMFAEELADLKD----KHPQRFHLAHVLSREP 179 (352)
T ss_pred HHHHHHHHHHHHH----hCcCcEEEEEEecCCC
Confidence 9999999986642 1223578887888764
No 33
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.92 E-value=2.1e-24 Score=233.88 Aligned_cols=204 Identities=16% Similarity=0.182 Sum_probs=154.9
Q ss_pred cceEEEEEEEecCCeEEEEEeCC--CCcccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEe--CCCchHHH
Q 005360 312 NRARLLSARALPCGVVELNFSKS--PGLYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKT--EGSWTQKL 387 (700)
Q Consensus 312 ~~~~vvs~~~l~~~~~~l~~~~~--~~~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~--~Gg~T~~L 387 (700)
.++++++++.+++++.+++++.+ ....|+||||+.|.+|. .++|||||+|.|. +++.++|+||. .|.+|++|
T Consensus 103 ~~~~V~~~~~~~~d~~~l~l~~~~~~~~~~~pGQfv~l~~~~---~~~R~ySias~p~-~~~~l~~~ik~~~~G~~s~~l 178 (339)
T PRK07609 103 LPCRVASLERVAGDVMRLKLRLPATERLQYLAGQYIEFILKD---GKRRSYSIANAPH-SGGPLELHIRHMPGGVFTDHV 178 (339)
T ss_pred EEEEEEEEEcCCCcEEEEEEEcCCCCCCccCCCCeEEEECCC---CceeeeecCCCCC-CCCEEEEEEEecCCCccHHHH
Confidence 45788999999999999999865 34689999999999985 2579999999985 45789999997 48889999
Q ss_pred HhhhccCCCceEEEEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhh
Q 005360 388 YQQISSSVDRLEVSVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSM 467 (700)
Q Consensus 388 ~~~~~~~~~~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~ 467 (700)
++.++. +.++.++||||.+.......++++|||||+||||++++++++++... .++++|+|++|+.+++.+
T Consensus 179 ~~~l~~---G~~v~v~gP~G~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~~~------~~~i~l~~g~r~~~dl~~ 249 (339)
T PRK07609 179 FGALKE---RDILRIEGPLGTFFLREDSDKPIVLLASGTGFAPIKSIVEHLRAKGI------QRPVTLYWGARRPEDLYL 249 (339)
T ss_pred HHhccC---CCEEEEEcCceeEEecCCCCCCEEEEecCcChhHHHHHHHHHHhcCC------CCcEEEEEecCChHHhcc
Confidence 875544 36799999999986543456789999999999999999999986532 468999999999999877
Q ss_pred HHHhcccCCCCcccCCCceEEEEEEeCCC--CCCCcchhhhhhhhcc-CCCCCCCCeEeEeCCcchHHHH
Q 005360 468 LNIMLPVSDAPTELSKLQLQIEAYVTRDS--EQPKTDTLKELQSIWF-KSNPSDSPVSGALGCNSWLWLA 534 (700)
Q Consensus 468 ~d~L~~~~~~~~~l~~~~l~i~iyvTr~~--~~~~~~~~~~~~~~~~-~p~~~~~~~~~vcGp~~~~~~~ 534 (700)
.+++.++.. +..+++++..++++. +.|....+...+.+.. .+.. +...+.+|||++|+..+
T Consensus 250 ~e~l~~~~~-----~~~~~~~~~~~s~~~~~~~~~g~~G~v~~~~~~~~~~~-~~~~vy~CGp~~m~~~~ 313 (339)
T PRK07609 250 SALAEQWAE-----ELPNFRYVPVVSDALDDDAWTGRTGFVHQAVLEDFPDL-SGHQVYACGSPVMVYAA 313 (339)
T ss_pred HHHHHHHHH-----hCCCeEEEEEecCCCCCCCccCccCcHHHHHHhhcccc-cCCEEEEECCHHHHHHH
Confidence 777765542 345788888899853 2333333333333221 1222 34678999999998543
No 34
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.92 E-value=1.5e-24 Score=229.28 Aligned_cols=208 Identities=12% Similarity=0.150 Sum_probs=155.4
Q ss_pred cceEEEEEEEecCCeEEEEEeCCCC--cccCCCcEEEEEeCCC-----------------------------CCceeeee
Q 005360 312 NRARLLSARALPCGVVELNFSKSPG--LYYNPTSILFVNVPSI-----------------------------SKLQWHPF 360 (700)
Q Consensus 312 ~~~~vvs~~~l~~~~~~l~~~~~~~--~~~~pGq~v~L~~p~~-----------------------------s~~q~HPF 360 (700)
...++++++.+++|+.+++++.++. ..|+||||+.|.+|.. +....|||
T Consensus 10 ~~~~v~~~~~~~~d~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~y 89 (283)
T cd06188 10 WECTVISNDNVATFIKELVLKLPSGEEIAFKAGGYIQIEIPAYEIAYADFDVAEKYRADWDKFGLWQLVFKHDEPVSRAY 89 (283)
T ss_pred EEEEEEEcccccchhhheEEecCCCceeeecCCceEEEEcCCccccccccccchhhhhHHhhhcccccccccCCcccccc
Confidence 3567889999999999999988765 6899999999999753 12235999
Q ss_pred EeecCCCCCCCeEEEEEEe-----------CCCchHHHHhhhccCCCceEEEEEccCCCCCCCCCCCCeEEEEEcCCChh
Q 005360 361 TVTSNCNMEQDKLSILVKT-----------EGSWTQKLYQQISSSVDRLEVSVEGPYGPNSAHFLRHESLVMVSGGSGIS 429 (700)
Q Consensus 361 TIas~p~~~~~~l~l~IK~-----------~Gg~T~~L~~~~~~~~~~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GIT 429 (700)
||+|.|. +++.++|.||. .|..|+.|+++..+ .++.++||+|.+... ...++++|||||+|||
T Consensus 90 Sias~p~-~~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~G----d~v~i~gP~G~f~l~-~~~~~~vlIAgGtGIt 163 (283)
T cd06188 90 SLANYPA-EEGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKPG----DKVTASGPFGEFFIK-DTDREMVFIGGGAGMA 163 (283)
T ss_pred CcCCCCC-CCCeEEEEEEEeccCCccCCCCCceehhHHhcCCCC----CEEEEECcccccccc-CCCCcEEEEEecccHh
Confidence 9999985 46789999996 67799999985443 789999999998753 4567999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhhHHHhcccCCCCcccCCCceEEEEEEeCCC--CCCCcchhhhh
Q 005360 430 PFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSMLNIMLPVSDAPTELSKLQLQIEAYVTRDS--EQPKTDTLKEL 507 (700)
Q Consensus 430 p~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~~d~L~~~~~~~~~l~~~~l~i~iyvTr~~--~~~~~~~~~~~ 507 (700)
|+++++++++++.. ..++++|+|++|+.+++.+.+++.++.. +..++++++.+|++. +.+....+.+.
T Consensus 164 P~~s~l~~~~~~~~-----~~~~v~l~~g~r~~~d~~~~~el~~l~~-----~~~~~~~~~~~s~~~~~~~~~~~~G~v~ 233 (283)
T cd06188 164 PLRSHIFHLLKTLK-----SKRKISFWYGARSLKELFYQEEFEALEK-----EFPNFKYHPVLSEPQPEDNWDGYTGFIH 233 (283)
T ss_pred HHHHHHHHHHhcCC-----CCceEEEEEecCCHHHhhHHHHHHHHHH-----HCCCeEEEEEECCCCccCCCCCcceeec
Confidence 99999999876532 2468999999999999999999986653 345788888888764 22322222222
Q ss_pred h----hhccCCCCCCCCeEeEeCCcchHHHHH
Q 005360 508 Q----SIWFKSNPSDSPVSGALGCNSWLWLAV 535 (700)
Q Consensus 508 ~----~~~~~p~~~~~~~~~vcGp~~~~~~~~ 535 (700)
+ .........++..+.+|||++|+..+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~vyiCGP~~m~~~~~ 265 (283)
T cd06188 234 QVLLENYLKKHPAPEDIEFYLCGPPPMNSAVI 265 (283)
T ss_pred HHHHHHHhccCCCCCCeEEEEECCHHHHHHHH
Confidence 1 111111112345688999999986543
No 35
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.92 E-value=3.8e-24 Score=217.27 Aligned_cols=196 Identities=21% Similarity=0.251 Sum_probs=148.4
Q ss_pred ceEEEEEEEecCCeEEEEEeCCCCcccCCCcEEEEEeCCCC-CceeeeeEeecCCCCCCCeEEEEEEeC---CCchHHHH
Q 005360 313 RARLLSARALPCGVVELNFSKSPGLYYNPTSILFVNVPSIS-KLQWHPFTVTSNCNMEQDKLSILVKTE---GSWTQKLY 388 (700)
Q Consensus 313 ~~~vvs~~~l~~~~~~l~~~~~~~~~~~pGq~v~L~~p~~s-~~q~HPFTIas~p~~~~~~l~l~IK~~---Gg~T~~L~ 388 (700)
+.++++++.+++++.+++++.++.+.++||||+.|.++..+ ..+.|||||+|.|. ++.++|.||.. |+.|+.|.
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~--~~~l~~~vk~~~~~g~~s~~l~ 79 (218)
T cd06196 2 TVTLLSIEPVTHDVKRLRFDKPEGYDFTPGQATEVAIDKPGWRDEKRPFTFTSLPE--DDVLEFVIKSYPDHDGVTEQLG 79 (218)
T ss_pred ceEEEEEEEcCCCeEEEEEcCCCcCCCCCCCEEEEEeeCCCCCccccccccccCCC--CCeEEEEEEEcCCCCcHhHHHH
Confidence 35788999999999999999888889999999999997643 34789999999874 47899999984 78999998
Q ss_pred hhhccCCCceEEEEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhhH
Q 005360 389 QQISSSVDRLEVSVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSML 468 (700)
Q Consensus 389 ~~~~~~~~~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~~ 468 (700)
+...+ .++.++||||.+.. .++++|||||+||||++++++++..+.. .++++|+|++|+.+++.+.
T Consensus 80 ~l~~G----~~v~i~gP~G~~~~----~~~~vlia~GtGiaP~~s~l~~~~~~~~------~~~v~l~~~~r~~~~~~~~ 145 (218)
T cd06196 80 RLQPG----DTLLIEDPWGAIEY----KGPGVFIAGGAGITPFIAILRDLAAKGK------LEGNTLIFANKTEKDIILK 145 (218)
T ss_pred hCCCC----CEEEEECCccceEe----cCceEEEecCCCcChHHHHHHHHHhCCC------CceEEEEEecCCHHHHhhH
Confidence 76544 67999999999643 2679999999999999999999986422 4689999999999999999
Q ss_pred HHhcccCCCCcccCCCceEEEEEEeCCCCCCCcchhhhhhh-hccCCCCCCCCeEeEeCCcchHHHHH
Q 005360 469 NIMLPVSDAPTELSKLQLQIEAYVTRDSEQPKTDTLKELQS-IWFKSNPSDSPVSGALGCNSWLWLAV 535 (700)
Q Consensus 469 d~L~~~~~~~~~l~~~~l~i~iyvTr~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~vcGp~~~~~~~~ 535 (700)
+++.++. +++++.++|++.++ ....+...+. +.... +.+...+.+|||++|+....
T Consensus 146 ~el~~l~---------~~~~~~~~s~~~~~-~~~~g~~~~~~l~~~~-~~~~~~vyiCGp~~m~~~~~ 202 (218)
T cd06196 146 DELEKML---------GLKFINVVTDEKDP-GYAHGRIDKAFLKQHV-TDFNQHFYVCGPPPMEEAIN 202 (218)
T ss_pred HHHHHhh---------cceEEEEEcCCCCC-CeeeeEECHHHHHHhc-CCCCCEEEEECCHHHHHHHH
Confidence 9997542 34666777875422 1112211111 11111 11235689999999875543
No 36
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.92 E-value=1.3e-23 Score=216.52 Aligned_cols=207 Identities=16% Similarity=0.200 Sum_probs=155.7
Q ss_pred ceEEEEEEEecCCeEEEEEeCCCC----cccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeC--CCchHH
Q 005360 313 RARLLSARALPCGVVELNFSKSPG----LYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTE--GSWTQK 386 (700)
Q Consensus 313 ~~~vvs~~~l~~~~~~l~~~~~~~----~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~~ 386 (700)
.+++++++.+++++.+++++.+.. ..++||||+.|++|..+..++||||++|.+. ++.++|.||.. |..|.+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~--~~~l~~~i~~~~~G~~s~~ 80 (241)
T cd06214 3 PLTVAEVVRETADAVSITFDVPEELRDAFRYRPGQFLTLRVPIDGEEVRRSYSICSSPG--DDELRITVKRVPGGRFSNW 80 (241)
T ss_pred eEEEEEEEecCCCeEEEEEecCcccCCCCCcCCCCeEEEEeecCCCeeeeeeeecCCCC--CCcEEEEEEEcCCCccchh
Confidence 467899999999999999987654 4799999999999855566889999999874 34899999985 778999
Q ss_pred HHhhhccCCCceEEEEEccCCCCCCCCC-CCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCch
Q 005360 387 LYQQISSSVDRLEVSVEGPYGPNSAHFL-RHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADL 465 (700)
Q Consensus 387 L~~~~~~~~~~~~v~VeGPyG~~~~~~~-~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l 465 (700)
|.+.++. +.++.+.||+|.+..... .+++++|||||+||||++++++++.+... .++++|+|++|+.+++
T Consensus 81 l~~~~~~---G~~v~i~gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~~------~~~v~l~~~~r~~~~~ 151 (241)
T cd06214 81 ANDELKA---GDTLEVMPPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALAREP------ASRVTLVYGNRTEASV 151 (241)
T ss_pred HHhccCC---CCEEEEeCCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhcCC------CCcEEEEEEeCCHHHh
Confidence 9854433 367999999999865333 47899999999999999999999886532 4689999999999999
Q ss_pred hhHHHhcccCCCCcccCCCceEEEEEEeCCCCCCCcchhhhhhh----hccCC-CCCCCCeEeEeCCcchHHHH
Q 005360 466 SMLNIMLPVSDAPTELSKLQLQIEAYVTRDSEQPKTDTLKELQS----IWFKS-NPSDSPVSGALGCNSWLWLA 534 (700)
Q Consensus 466 ~~~d~L~~~~~~~~~l~~~~l~i~iyvTr~~~~~~~~~~~~~~~----~~~~p-~~~~~~~~~vcGp~~~~~~~ 534 (700)
.+.+++.++.+ ....+++++.++|++++++....+...+. ...+. .+.+...+.+|||++|+...
T Consensus 152 ~~~~~l~~l~~----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~icGp~~mv~~v 221 (241)
T cd06214 152 IFREELADLKA----RYPDRLTVIHVLSREQGDPDLLRGRLDAAKLNALLKNLLDATEFDEAFLCGPEPMMDAV 221 (241)
T ss_pred hHHHHHHHHHH----hCcCceEEEEEecCCCCCcccccCccCHHHHHHhhhhhcccccCcEEEEECCHHHHHHH
Confidence 99898886642 12347888888887654443222222111 11110 12345688999999987543
No 37
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.91 E-value=9.4e-24 Score=228.16 Aligned_cols=204 Identities=12% Similarity=0.121 Sum_probs=153.0
Q ss_pred ceEEEEEEEecCCeEEEEEeCCCCcccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeC--CCchHHHHhh
Q 005360 313 RARLLSARALPCGVVELNFSKSPGLYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTE--GSWTQKLYQQ 390 (700)
Q Consensus 313 ~~~vvs~~~l~~~~~~l~~~~~~~~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~~L~~~ 390 (700)
..++.+++.+++++..+++..++...|+||||+.|.++.. ....|||||+|.|. +++.++|.||.. |..|++|++.
T Consensus 11 ~~~V~~i~~~t~~v~~l~l~~~~~~~f~pGQfv~l~~~~~-~~~~R~ySias~p~-~~~~l~i~Vk~~~~G~~S~~L~~~ 88 (332)
T PRK10684 11 RMQVHSIVQETPDVWTISLICHDFYPYRAGQYALVSIRNS-AETLRAYTLSSTPG-VSEFITLTVRRIDDGVGSQWLTRD 88 (332)
T ss_pred eEEEEEEEccCCCeEEEEEcCCCCCCcCCCCEEEEEecCC-CEeeeeecccCCCC-CCCcEEEEEEEcCCCcchhHHHhc
Confidence 5688899999999999999877777899999999999853 34579999999885 456899999985 7899999865
Q ss_pred hccCCCceEEEEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhhHHH
Q 005360 391 ISSSVDRLEVSVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSMLNI 470 (700)
Q Consensus 391 ~~~~~~~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~~d~ 470 (700)
++. ++++.+.||+|++..+....++++|||||+||||+++++++++.... .++++|+|++|+.+++.+.++
T Consensus 89 l~~---Gd~v~v~gP~G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~~~~------~~~v~l~y~~r~~~~~~~~~e 159 (332)
T PRK10684 89 VKR---GDYLWLSDAMGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNRP------QADVQVIFNVRTPQDVIFADE 159 (332)
T ss_pred CCC---CCEEEEeCCccccccCCCCCCcEEEEecCcCcchHHHHHHHHHhcCC------CCCEEEEEeCCChHHhhhHHH
Confidence 544 36899999999986433456789999999999999999999876432 468999999999999999999
Q ss_pred hcccCCCCcccCCCceEEEEEEeCCCCCCCcchhhhhh-hhcc-CCCCCCCCeEeEeCCcchHHHH
Q 005360 471 MLPVSDAPTELSKLQLQIEAYVTRDSEQPKTDTLKELQ-SIWF-KSNPSDSPVSGALGCNSWLWLA 534 (700)
Q Consensus 471 L~~~~~~~~~l~~~~l~i~iyvTr~~~~~~~~~~~~~~-~~~~-~p~~~~~~~~~vcGp~~~~~~~ 534 (700)
|.++.. +..+++++++.+++.. .....+.+.+ .+.. .+.+. ...+.+|||++||...
T Consensus 160 l~~l~~-----~~~~~~~~~~~~~~~~-~~~~~grl~~~~l~~~~~~~~-~~~vyiCGP~~m~~~v 218 (332)
T PRK10684 160 WRQLKQ-----RYPQLNLTLVAENNAT-EGFIAGRLTRELLQQAVPDLA-SRTVMTCGPAPYMDWV 218 (332)
T ss_pred HHHHHH-----HCCCeEEEEEeccCCC-CCccccccCHHHHHHhccccc-CCEEEEECCHHHHHHH
Confidence 987653 3446677766665321 1111121111 1111 12222 3578999999998643
No 38
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.91 E-value=2.1e-23 Score=216.38 Aligned_cols=207 Identities=15% Similarity=0.131 Sum_probs=151.2
Q ss_pred ccceEEEEEEEecCCeEEEEEeCCCCcccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeC--CCchHHHH
Q 005360 311 RNRARLLSARALPCGVVELNFSKSPGLYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTE--GSWTQKLY 388 (700)
Q Consensus 311 ~~~~~vvs~~~l~~~~~~l~~~~~~~~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~~L~ 388 (700)
+...++.+++.+++++++++++.+. ..++||||+.|.++..+....|||||+|.|. ++.++++||.. |..|+.|.
T Consensus 4 ~~~~~V~~i~~~t~~v~~l~l~~~~-~~~~pGQfv~l~~~~~g~~~~R~ySias~p~--~~~l~~~ik~~~~G~~S~~L~ 80 (248)
T PRK10926 4 WVTGKVTKVQNWTDALFSLTVHAPV-DPFTAGQFTKLGLEIDGERVQRAYSYVNAPD--NPDLEFYLVTVPEGKLSPRLA 80 (248)
T ss_pred cEEEEEEEEEEcCCCeEEEEEeCCC-CCCCCCCEEEEEEecCCcEEEeeecccCCCC--CCeEEEEEEEeCCCCcChHHH
Confidence 4467889999999999999998753 3799999999998644444679999999974 45899999984 89999998
Q ss_pred hhhccCCCceEEEEEccCCCCCC-CCC-CCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchh
Q 005360 389 QQISSSVDRLEVSVEGPYGPNSA-HFL-RHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLS 466 (700)
Q Consensus 389 ~~~~~~~~~~~v~VeGPyG~~~~-~~~-~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~ 466 (700)
+...+ +++.+.||+|.... +.. ..++++|||||+||||++++++++.+.. ..++++|+|++|+.+|+.
T Consensus 81 ~l~~G----d~v~i~gp~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~------~~~~v~l~~g~r~~~d~~ 150 (248)
T PRK10926 81 ALKPG----DEVQVVSEAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDLE------RFKNLVLVHAARYAADLS 150 (248)
T ss_pred hCCCC----CEEEEecCCCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhC------CCCcEEEEEeCCcHHHHH
Confidence 64444 78999999854422 212 3478999999999999999999986432 246899999999999999
Q ss_pred hHHHhcccCCCCcccCCCceEEEEEEeCCCCCCCcchhhhhhh--------hccCCCCCCCCeEeEeCCcchHHHHH
Q 005360 467 MLNIMLPVSDAPTELSKLQLQIEAYVTRDSEQPKTDTLKELQS--------IWFKSNPSDSPVSGALGCNSWLWLAV 535 (700)
Q Consensus 467 ~~d~L~~~~~~~~~l~~~~l~i~iyvTr~~~~~~~~~~~~~~~--------~~~~p~~~~~~~~~vcGp~~~~~~~~ 535 (700)
+.+++.++.. ..+.+++++..+|+++. +....+...+. ....+...+...+.+|||++|+..+.
T Consensus 151 ~~~el~~l~~----~~~~~~~v~~~~s~~~~-~~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~CGp~~Mv~~~~ 222 (248)
T PRK10926 151 YLPLMQELEQ----RYEGKLRIQTVVSRETA-PGSLTGRVPALIESGELEAAVGLPMDAETSHVMLCGNPQMVRDTQ 222 (248)
T ss_pred HHHHHHHHHH----hCcCCEEEEEEECCCCC-CCCcCCccchhhhcchHHHHhcCCCCccCCEEEEECCHHHHHHHH
Confidence 9999986642 12247888888988642 22112211111 11112223457899999999986544
No 39
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.91 E-value=5.5e-23 Score=207.58 Aligned_cols=141 Identities=16% Similarity=0.268 Sum_probs=116.0
Q ss_pred EEEEecCCeEEEEEeCCCCc---ccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeCC---CchHHHHhhh
Q 005360 318 SARALPCGVVELNFSKSPGL---YYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTEG---SWTQKLYQQI 391 (700)
Q Consensus 318 s~~~l~~~~~~l~~~~~~~~---~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~G---g~T~~L~~~~ 391 (700)
+++.+++++++++++.+... .|+||||+.|++|. .+.|||||+|.|. +++.++|.||..+ +.|..|.+.+
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~~~l~~~~---~~~r~ySi~s~~~-~~~~l~~~v~~~~~g~~~s~~l~~~~ 77 (211)
T cd06185 2 RIRDEAPDIRSFELEAPDGAPLPAFEPGAHIDVHLPN---GLVRQYSLCGDPA-DRDRYRIAVLREPASRGGSRYMHELL 77 (211)
T ss_pred ceEEcCCCeEEEEEEeCCCCcCCCCCCCceEEEEcCC---CCceeeeccCCCC-CCCEEEEEEEeccCCCchHHHHHhcC
Confidence 46678899999999987653 79999999999985 3679999999875 4588999999853 3788988765
Q ss_pred ccCCCceEEEEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhhHHHh
Q 005360 392 SSSVDRLEVSVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSMLNIM 471 (700)
Q Consensus 392 ~~~~~~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~~d~L 471 (700)
+. ++++.++||+|.+... ...++++|||||+||||++++++++.+. .++++++|++|+.+++.+.++|
T Consensus 78 ~~---Gd~v~i~gP~g~f~~~-~~~~~~v~ia~GtGiap~~~il~~~~~~--------~~~v~l~~~~r~~~~~~~~~~l 145 (211)
T cd06185 78 RV---GDELEVSAPRNLFPLD-EAARRHLLIAGGIGITPILSMARALAAR--------GADFELHYAGRSREDAAFLDEL 145 (211)
T ss_pred CC---CCEEEEcCCccCCcCC-CCCCcEEEEeccchHhHHHHHHHHHHhC--------CCCEEEEEEeCCCcchhHHHHH
Confidence 53 3679999999987542 3457899999999999999999998652 3579999999999999888888
Q ss_pred ccc
Q 005360 472 LPV 474 (700)
Q Consensus 472 ~~~ 474 (700)
.++
T Consensus 146 ~~~ 148 (211)
T cd06185 146 AAL 148 (211)
T ss_pred hhh
Confidence 643
No 40
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.91 E-value=7.5e-23 Score=212.94 Aligned_cols=149 Identities=23% Similarity=0.370 Sum_probs=130.0
Q ss_pred ccceEEEEEEEecCCeEEEEEeCCCCcc--cCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeC--CCchHH
Q 005360 311 RNRARLLSARALPCGVVELNFSKSPGLY--YNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTE--GSWTQK 386 (700)
Q Consensus 311 ~~~~~vvs~~~l~~~~~~l~~~~~~~~~--~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~~ 386 (700)
++..++.+++..+++++.+++..+.+.. |+||||+.|.++..+....|.||++|+|. +++.+.+.||+. |+.|++
T Consensus 5 ~~~~~V~~v~~~t~di~sf~l~~~~g~~~~f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~-~~~~~~isVk~~~~G~~S~~ 83 (266)
T COG1018 5 FRRVTVTSVEPETDDVFSFTLEPPDGLRLDFEPGQYITVGLPNGGEPLLRAYSLSSAPD-EDSLYRISVKREDGGGGSNW 83 (266)
T ss_pred eEEEEEEEEEEecCceEEEEEEcCCCCccccCCCCeEEEEecCCCceeeEEEEeccCCC-CCceEEEEEEEeCCCcccHH
Confidence 4567899999999999999999988764 99999999999977778999999999996 456899999994 899999
Q ss_pred HHhhhccCCCceEEEEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchh
Q 005360 387 LYQQISSSVDRLEVSVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLS 466 (700)
Q Consensus 387 L~~~~~~~~~~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~ 466 (700)
|++.++. ++++.+.+|.|.+..+....++++|+|||+||||++||++++.... . .+|.|++++|+.+++.
T Consensus 84 Lh~~lk~---Gd~l~v~~P~G~F~l~~~~~~~~llla~G~GITP~lSml~~~~~~~------~-~~v~l~h~~R~~~~~a 153 (266)
T COG1018 84 LHDHLKV---GDTLEVSAPAGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLDRG------P-ADVVLVHAARTPADLA 153 (266)
T ss_pred HHhcCCC---CCEEEEecCCCCccCCCCCCCcEEEEeccccHhHHHHHHHHHHHhC------C-CCEEEEEecCChhhcc
Confidence 9977765 4778889999999765545558999999999999999999987652 2 6899999999999999
Q ss_pred hHHH
Q 005360 467 MLNI 470 (700)
Q Consensus 467 ~~d~ 470 (700)
+.|+
T Consensus 154 f~de 157 (266)
T COG1018 154 FRDE 157 (266)
T ss_pred hhhH
Confidence 9996
No 41
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.91 E-value=3.6e-23 Score=221.66 Aligned_cols=215 Identities=11% Similarity=0.094 Sum_probs=156.5
Q ss_pred ccceEEEEEEEecCCeEEEEEeCCC--CcccCCCcEEEEEeCCC---CCceeeeeEeecCCCCCCCeEEEEEEe--CCCc
Q 005360 311 RNRARLLSARALPCGVVELNFSKSP--GLYYNPTSILFVNVPSI---SKLQWHPFTVTSNCNMEQDKLSILVKT--EGSW 383 (700)
Q Consensus 311 ~~~~~vvs~~~l~~~~~~l~~~~~~--~~~~~pGq~v~L~~p~~---s~~q~HPFTIas~p~~~~~~l~l~IK~--~Gg~ 383 (700)
+.++++.+++.+++|+.+++|+.++ .+.+.||||+.+.++.. .....||||++|.|. +++.++|.||. .|.+
T Consensus 52 ~~~~~V~~i~~~t~dv~~f~f~lp~~~~~~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~-~~~~le~~IK~~~~G~~ 130 (325)
T PTZ00274 52 YEPYQLGEVIPITHDTALFRFLLHSEEEFNLKPCSTLQACYKYGVQPMDQCQRFYTPVTANH-TKGYFDIIVKRKKDGLM 130 (325)
T ss_pred eEEEEEEEEEEeCCCeEEEEEeCCcccccCCCCccEEEEEEecCCCCCCEEEEeeecCCCCC-CCCeEEEEEEEcCCCcc
Confidence 4567899999999999999997644 57899999999877621 234679999999985 46789999999 5778
Q ss_pred hHHHHhhhccCCCceEEEEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCC
Q 005360 384 TQKLYQQISSSVDRLEVSVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSA 463 (700)
Q Consensus 384 T~~L~~~~~~~~~~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~ 463 (700)
|.+|+++..+ +++.+.||+|....+....++++||||||||||+++++++++++..........+|+|+|++|+.+
T Consensus 131 S~~L~~lk~G----d~v~v~GP~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R~~~ 206 (325)
T PTZ00274 131 TNHLFGMHVG----DKLLFRSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRTER 206 (325)
T ss_pred cHHHhcCCCC----CEEEEeCCeeecccCCCCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEcCCHH
Confidence 9999975444 789999998876433344579999999999999999999988653200111345899999999999
Q ss_pred chhhHHHhcccCCCCcccCCCceEEEEEEeCCC--CCCCcchhhhhhhh-c-cCCCCC-CCCeEeEeCCcchHHHH
Q 005360 464 DLSMLNIMLPVSDAPTELSKLQLQIEAYVTRDS--EQPKTDTLKELQSI-W-FKSNPS-DSPVSGALGCNSWLWLA 534 (700)
Q Consensus 464 ~l~~~d~L~~~~~~~~~l~~~~l~i~iyvTr~~--~~~~~~~~~~~~~~-~-~~p~~~-~~~~~~vcGp~~~~~~~ 534 (700)
|+.+.++|+++.. ....+++++..++++. ++|....+.+.+.+ . ..|.++ ....+.+|||++||-..
T Consensus 207 di~~~~eL~~La~----~~~~~f~v~~~ls~~~~~~~w~g~~G~V~~~ll~~~~~~~~~~~~~vylCGPp~Mm~av 278 (325)
T PTZ00274 207 HILLKGLFDDLAR----RYSNRFKVYYTIDQAVEPDKWNHFLGYVTKEMVRRTMPAPEEKKKIIMLCGPDQLLNHV 278 (325)
T ss_pred HhhHHHHHHHHHH----hCCCcEEEEEEeCCCCcccCCCCCCCccCHHHHHHhcCCCccCCcEEEEeCCHHHHHHh
Confidence 9999998876653 1223688888888653 23433334333322 1 122222 23578999999998443
No 42
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.90 E-value=3.8e-23 Score=214.13 Aligned_cols=191 Identities=19% Similarity=0.236 Sum_probs=142.2
Q ss_pred EEEEEecCCeEEEEEeCCC-CcccCCCcEEEEEeCC-CCCceeeeeEeecCCCCCCCeEEEEEEeCCCchHHHHhhhccC
Q 005360 317 LSARALPCGVVELNFSKSP-GLYYNPTSILFVNVPS-ISKLQWHPFTVTSNCNMEQDKLSILVKTEGSWTQKLYQQISSS 394 (700)
Q Consensus 317 vs~~~l~~~~~~l~~~~~~-~~~~~pGq~v~L~~p~-~s~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~~~~~~~ 394 (700)
.+++.+++++.+++++.+. ...++||||+.|++|. .+..+.||||++|.|. +++.++|.||..|.+|+.|.+...+
T Consensus 2 ~~~~~~t~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~-~~~~l~l~v~~~G~~s~~l~~l~~G- 79 (246)
T cd06218 2 LSNREIADDIYRLVLEAPEIAAAAKPGQFVMLRVPDGSDPLLRRPISIHDVDP-EEGTITLLYKVVGKGTRLLSELKAG- 79 (246)
T ss_pred cceeEecCCeEEEEEeCcchhccCCCCcEEEEEeCCCCCCcCCCceEeeeccC-CCCEEEEEEEEECcchHHHhcCCCC-
Confidence 4577889999999999776 5679999999999986 3456889999999874 4678999999999999999765544
Q ss_pred CCceEEEEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhhHHHhccc
Q 005360 395 VDRLEVSVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSMLNIMLPV 474 (700)
Q Consensus 395 ~~~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~~d~L~~~ 474 (700)
+++.++||||.........++++|||||+||||++|+++++.++ .++++|+|++|+.+++.+.++|.++
T Consensus 80 ---d~v~i~gP~G~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~--------~~~v~l~~~~r~~~d~~~~~eL~~l 148 (246)
T cd06218 80 ---DELDVLGPLGNGFDLPDDDGKVLLVGGGIGIAPLLFLAKQLAER--------GIKVTVLLGFRSADDLFLVEEFEAL 148 (246)
T ss_pred ---CEEEEEecCCCCcCCCCCCCcEEEEecccCHHHHHHHHHHHHhc--------CCceEEEEEccchhhhhhHHHHHhh
Confidence 68999999997543223578999999999999999999998752 3589999999999999999999755
Q ss_pred CCCCcccCCCceEEEEEEeCCCCCCCcchhhhhhhhccCCCCCCCCeEeEeCCcchHHH
Q 005360 475 SDAPTELSKLQLQIEAYVTRDSEQPKTDTLKELQSIWFKSNPSDSPVSGALGCNSWLWL 533 (700)
Q Consensus 475 ~~~~~~l~~~~l~i~iyvTr~~~~~~~~~~~~~~~~~~~p~~~~~~~~~vcGp~~~~~~ 533 (700)
.. ++. ++.++ .+....+...+.+.......+...+.+|||++|+..
T Consensus 149 ~~----------~~~--~~~~~-~~~~~~g~v~~~l~~~~~~~~~~~vyiCGp~~mv~~ 194 (246)
T cd06218 149 GA----------EVY--VATDD-GSAGTKGFVTDLLKELLAEARPDVVYACGPEPMLKA 194 (246)
T ss_pred CC----------cEE--EEcCC-CCCCcceehHHHHHHHhhccCCCEEEEECCHHHHHH
Confidence 31 122 22222 122222222222221111124578999999998743
No 43
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.90 E-value=9.1e-23 Score=211.82 Aligned_cols=192 Identities=17% Similarity=0.212 Sum_probs=144.7
Q ss_pred cceEEEEEEEecCCeEEEEEeCCCCcccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeCCCchHHHHhhh
Q 005360 312 NRARLLSARALPCGVVELNFSKSPGLYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTEGSWTQKLYQQI 391 (700)
Q Consensus 312 ~~~~vvs~~~l~~~~~~l~~~~~~~~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~~~~ 391 (700)
+..++++++.+++|+.+++++.++...++||||+.|++|..+...+||||+++.| +++++|.||..|.+|++|++..
T Consensus 5 ~~~~V~~~~~~t~d~~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~---~~~l~l~Vk~~G~~t~~l~~l~ 81 (250)
T PRK00054 5 ENMKIVENKEIAPNIYTLVLDGEKVFDMKPGQFVMVWVPGVEPLLERPISISDID---KNEITILYRKVGEGTKKLSKLK 81 (250)
T ss_pred eEEEEEEEEEecCCeEEEEEeCccccCCCCCcEEEEEeCCCCCcCceeeEEeeeC---CCEEEEEEEEcChHHHHHhcCC
Confidence 4568899999999999999997766789999999999987656678999999986 4689999999999999998754
Q ss_pred ccCCCceEEEEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhhHHHh
Q 005360 392 SSSVDRLEVSVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSMLNIM 471 (700)
Q Consensus 392 ~~~~~~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~~d~L 471 (700)
.+ .++.++||||+......+.+++++||||+||||++++++++.++ .++++|+|++|+.+|+.+.+++
T Consensus 82 ~G----~~v~i~gP~G~~f~l~~~~~~~vlIagG~GiaP~~s~l~~~~~~--------~~~v~l~~~~r~~~d~~~~~el 149 (250)
T PRK00054 82 EG----DELDIRGPLGNGFDLEEIGGKVLLVGGGIGVAPLYELAKELKKK--------GVEVTTVLGARTKDEVIFEEEF 149 (250)
T ss_pred CC----CEEEEEcccCCCCCCCCCCCeEEEEeccccHHHHHHHHHHHHHc--------CCcEEEEEEcCCHHHhhhHHHH
Confidence 44 68999999998533223668999999999999999999998753 2479999999999999999998
Q ss_pred cccCCCCcccCCCceEEEEEEeCCCCCCCcchhhhhhhhccCCCCCCCCeEeEeCCcchHHHH
Q 005360 472 LPVSDAPTELSKLQLQIEAYVTRDSEQPKTDTLKELQSIWFKSNPSDSPVSGALGCNSWLWLA 534 (700)
Q Consensus 472 ~~~~~~~~~l~~~~l~i~iyvTr~~~~~~~~~~~~~~~~~~~p~~~~~~~~~vcGp~~~~~~~ 534 (700)
++.. + + +++.++ .+....+...+.+.... .+...+.+|||++|+..+
T Consensus 150 ~~~~-------~----~--~~~~~~-~~~~~~g~v~~~l~~~~--~~~~~vyvCGp~~m~~~v 196 (250)
T PRK00054 150 AKVG-------D----V--YVTTDD-GSYGFKGFVTDVLDELD--SEYDAIYSCGPEIMMKKV 196 (250)
T ss_pred HhcC-------C----E--EEEecC-CCCCcccchhHhHhhhc--cCCCEEEEeCCHHHHHHH
Confidence 7521 1 1 222222 22222222222221111 234578999999998543
No 44
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.90 E-value=6.8e-23 Score=218.10 Aligned_cols=207 Identities=16% Similarity=0.227 Sum_probs=152.9
Q ss_pred cceEEEEEEEecCCeEEEEEeCCC---CcccCCCcEEEEEeCCCCC----ceeeeeEeecCCCCCCCeEEEEEEeC----
Q 005360 312 NRARLLSARALPCGVVELNFSKSP---GLYYNPTSILFVNVPSISK----LQWHPFTVTSNCNMEQDKLSILVKTE---- 380 (700)
Q Consensus 312 ~~~~vvs~~~l~~~~~~l~~~~~~---~~~~~pGq~v~L~~p~~s~----~q~HPFTIas~p~~~~~~l~l~IK~~---- 380 (700)
+.+++++++.+++++..++++.+. ...++||||+.|+++..+. ...||||++|.|. +++.++|.||..
T Consensus 34 ~~~~v~~~~~~s~d~~~~~~~~~~~~~~~~~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~-~~~~i~~~Ik~~~~~~ 112 (300)
T PTZ00319 34 QHFKLIKKTEVTHDTFIFRFALHSPTQRLGLPIGQHIVFRCDCTTPGKPETVQHSYTPISSDD-EKGYVDFLIKVYFKGV 112 (300)
T ss_pred EEEEEEEEEEcCCCceEEEEECCCCcccCCCccceEEEEEEEeCCCCccceEEeeeccCCCcc-cCCEEEEEEEEeccCC
Confidence 457899999999999999997542 2579999999999975321 4679999999875 567899999975
Q ss_pred -------CCchHHHHhhhccCCCceEEEEEccCCCCCCCC---------------CCCCeEEEEEcCCChhhHHHHHHHH
Q 005360 381 -------GSWTQKLYQQISSSVDRLEVSVEGPYGPNSAHF---------------LRHESLVMVSGGSGISPFISIVREL 438 (700)
Q Consensus 381 -------Gg~T~~L~~~~~~~~~~~~v~VeGPyG~~~~~~---------------~~~~~vvlIAGG~GITp~lsil~~l 438 (700)
|..|++|.++..+ +++.++||+|.+...- .+.++++|||||+||||++++++++
T Consensus 113 ~~~~~~~G~~S~~L~~l~~G----d~v~i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGIaP~~sml~~l 188 (300)
T PTZ00319 113 HPSFPNGGRLSQHLYHMKLG----DKIEMRGPVGKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGITPMLQIIHAI 188 (300)
T ss_pred CCCCCCCCChhhhhhcCCCC----CEEEEEccceeeEecCCcceeeccccccccccccceEEEEecCcccCHHHHHHHHH
Confidence 8999999765444 7899999999863211 1235899999999999999999998
Q ss_pred HHhcCCCCCCCCCeEEEEEEECCCCchhhHHHhcccCCCCcccCCCceEEEEEEeCCC-CCCCcchhhhhhhhc--cCCC
Q 005360 439 IFQSNNNPDYKIPNVHLICVFKKSADLSMLNIMLPVSDAPTELSKLQLQIEAYVTRDS-EQPKTDTLKELQSIW--FKSN 515 (700)
Q Consensus 439 ~~~~~~~~~~~~~~I~Liw~vR~~~~l~~~d~L~~~~~~~~~l~~~~l~i~iyvTr~~-~~~~~~~~~~~~~~~--~~p~ 515 (700)
+++.. +.++++|+|++|+.+++.+.|+|.+.. +..+++++..+++++ +.|....+...+... ..|.
T Consensus 189 ~~~~~-----~~~~i~liyg~r~~~dl~~~~eL~~~~------~~~~~~~~~~~~~~~~~~~~~~~G~v~~~~l~~~~~~ 257 (300)
T PTZ00319 189 KKNKE-----DRTKVFLVYANQTEDDILLRKELDEAA------KDPRFHVWYTLDREATPEWKYGTGYVDEEMLRAHLPV 257 (300)
T ss_pred HhCCC-----CCceEEEEEecCCHHHhhHHHHHHHHh------hCCCEEEEEEECCCCCCCcccccceeCHHHHHhhcCC
Confidence 76422 245899999999999999999998632 345788888888743 233332332222111 1121
Q ss_pred CC------CCCeEeEeCCcchHHHH
Q 005360 516 PS------DSPVSGALGCNSWLWLA 534 (700)
Q Consensus 516 ~~------~~~~~~vcGp~~~~~~~ 534 (700)
++ ++..+.+|||++|+..+
T Consensus 258 ~~~~~~~~~~~~vyiCGp~~mv~~~ 282 (300)
T PTZ00319 258 PDPQNSGIKKVMALMCGPPPMLQMA 282 (300)
T ss_pred ccccccccCCeEEEEECCHHHHHHH
Confidence 21 34689999999998654
No 45
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.90 E-value=7.9e-23 Score=213.77 Aligned_cols=197 Identities=15% Similarity=0.220 Sum_probs=146.1
Q ss_pred ceEEEEEEEecCCeEEEEEeCCCCcccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeCCCchHHHHhhhc
Q 005360 313 RARLLSARALPCGVVELNFSKSPGLYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTEGSWTQKLYQQIS 392 (700)
Q Consensus 313 ~~~vvs~~~l~~~~~~l~~~~~~~~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~~~~~ 392 (700)
+.++++++.+++++.+++++.+ ..++||||+.|++|..+ .|||||++.+ ++.++|+||..|..|+.|.++..
T Consensus 9 ~~~v~~i~~~t~~~~~~~l~~~--~~~~pGQfi~l~~~~~~---~~pySi~~~~---~~~~~~~Ik~~G~~S~~L~~l~~ 80 (263)
T PRK08221 9 AYKILDITKHTDIEYTFRVEVD--GPVKPGQFFEVSLPKVG---EAPISVSDYG---DGYIDLTIRRVGKVTDEIFNLKE 80 (263)
T ss_pred cEEEEEEeccCCcEEEEEecCC--CCCCCCceEEEEeCCCC---cceeeccCCC---CCEEEEEEEeCCchhhHHHhCCC
Confidence 4688999999999999999864 47999999999998643 3999998863 46899999999999999987544
Q ss_pred cCCCceEEEEEccCCCC-CCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhhHHHh
Q 005360 393 SSVDRLEVSVEGPYGPN-SAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSMLNIM 471 (700)
Q Consensus 393 ~~~~~~~v~VeGPyG~~-~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~~d~L 471 (700)
+ .++.++||+|.. ..+....++++|||||+||||++|++++++++.+ ..++++|+|++|+.+++.+.+++
T Consensus 81 G----d~v~v~gP~G~~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~~~~-----~~~~v~L~~g~r~~~~l~~~~el 151 (263)
T PRK08221 81 G----DKLFLRGPYGNGFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYENPQ-----EIKSLDLILGFKNPDDILFKEDL 151 (263)
T ss_pred C----CEEEEECCCCCCcccCccCCccEEEEcccccHHHHHHHHHHHHhCcc-----cCceEEEEEecCCHHHhhHHHHH
Confidence 4 679999999984 3322345799999999999999999999876422 24689999999999999999999
Q ss_pred cccCCCCcccCCCceEEEEEEeCCCCCCCcchhhhhhhhccC-CCCCCCCeEeEeCCcchHHHH
Q 005360 472 LPVSDAPTELSKLQLQIEAYVTRDSEQPKTDTLKELQSIWFK-SNPSDSPVSGALGCNSWLWLA 534 (700)
Q Consensus 472 ~~~~~~~~~l~~~~l~i~iyvTr~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~vcGp~~~~~~~ 534 (700)
.++.. + .++++.++++++.+....+...+.+... ....+...+.+|||++|+...
T Consensus 152 ~~~~~------~--~~~~~~~~~~~~~~~~~~G~v~~~l~~~~~~~~~~~~vylCGp~~mv~~~ 207 (263)
T PRK08221 152 KRWRE------K--INLILTLDEGEEGYRGNVGLVTKYIPELTLKDIDNMQVIVVGPPIMMKFT 207 (263)
T ss_pred HHHhh------c--CcEEEEecCCCCCCccCccccChhhHhccCCCcCCeEEEEECCHHHHHHH
Confidence 87652 2 2344555655444433333222222111 111145678999999998543
No 46
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.90 E-value=9e-23 Score=210.89 Aligned_cols=191 Identities=18% Similarity=0.205 Sum_probs=141.8
Q ss_pred EEEEEecCCeEEEEEeCCC-CcccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeCCCchHHHHhhhccCC
Q 005360 317 LSARALPCGVVELNFSKSP-GLYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTEGSWTQKLYQQISSSV 395 (700)
Q Consensus 317 vs~~~l~~~~~~l~~~~~~-~~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~~~~~~~~ 395 (700)
++++.+++++.+++++.+. ...++||||++|++|......+|||||+|.+. ++++++|.||..|..|+.|.+...+
T Consensus 2 ~~~~~~t~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~rpySi~s~~~-~~~~l~l~i~~~G~~t~~l~~~~~G-- 78 (243)
T cd06192 2 VKKEQLEPNLVLLTIKAPLAARLFRPGQFVFLRNFESPGLERIPLSLAGVDP-EEGTISLLVEIRGPKTKLIAELKPG-- 78 (243)
T ss_pred ceEEEecCCEEEEEEEccchhhcCCCCCeEEEecCCCCCceeeeeEeeecCC-CCCEEEEEEEEcCchHHHHHhCCCC--
Confidence 4567789999999999764 35799999999999754456889999999875 5689999999999999999765544
Q ss_pred CceEEEEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhhHHHhcccC
Q 005360 396 DRLEVSVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSMLNIMLPVS 475 (700)
Q Consensus 396 ~~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~~d~L~~~~ 475 (700)
.++.++||||++.......++++|||||+||||++++++++.++ .++++|+|++|+.+|+.+.|+|....
T Consensus 79 --~~l~i~gP~G~~~~~~~~~~~~lliagGtGiap~~~~l~~~~~~--------~~~v~l~~~~r~~~d~~~~~el~~~~ 148 (243)
T cd06192 79 --EKLDVMGPLGNGFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAAN--------GNKVTVLAGAKKAKEEFLDEYFELPA 148 (243)
T ss_pred --CEEEEEccCCCCCccCCCCCEEEEEeCcccHHHHHHHHHHHHHC--------CCeEEEEEecCcHHHHHHHHHHHhhc
Confidence 68999999998765333478999999999999999999998753 35899999999999999999886431
Q ss_pred CCCcccCCCceEEEEEEeCCCCCCCcchhhhhhhhccCCCCCCCCeEeEeCCcchHHHH
Q 005360 476 DAPTELSKLQLQIEAYVTRDSEQPKTDTLKELQSIWFKSNPSDSPVSGALGCNSWLWLA 534 (700)
Q Consensus 476 ~~~~~l~~~~l~i~iyvTr~~~~~~~~~~~~~~~~~~~p~~~~~~~~~vcGp~~~~~~~ 534 (700)
...++++++. +....+.........|. .+...+.+|||++|+...
T Consensus 149 -----------~~~~~~~~~~--~~~~~g~v~~~~~~~~~-~~~~~v~icGp~~mv~~~ 193 (243)
T cd06192 149 -----------DVEIWTTDDG--ELGLEGKVTDSDKPIPL-EDVDRIIVAGSDIMMKAV 193 (243)
T ss_pred -----------CeEEEEecCC--CCccceeechhhhhhhc-ccCCEEEEECCHHHHHHH
Confidence 1223444432 22222211111111121 233579999999998554
No 47
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=99.90 E-value=1.3e-22 Score=216.78 Aligned_cols=214 Identities=14% Similarity=0.079 Sum_probs=155.0
Q ss_pred ceEEEEEEEec-----CCeEEEEEeCCCCcccCCCcEEEEEeCCCC------CceeeeeEeecCCCCC---CCeEEEEEE
Q 005360 313 RARLLSARALP-----CGVVELNFSKSPGLYYNPTSILFVNVPSIS------KLQWHPFTVTSNCNME---QDKLSILVK 378 (700)
Q Consensus 313 ~~~vvs~~~l~-----~~~~~l~~~~~~~~~~~pGq~v~L~~p~~s------~~q~HPFTIas~p~~~---~~~l~l~IK 378 (700)
..++++++.++ +++.+++++.++.+.|.||||+.|.+|+.. ...+|+|||+|+|.++ ..+++|+||
T Consensus 26 ~~~V~~i~~~~~p~~~~~v~~l~l~~~~~~~f~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~~~~lel~Vr 105 (307)
T PLN03116 26 TATIVSVERIVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFDGKTASLCVR 105 (307)
T ss_pred EEEEEeeEEcccCCCCCceEEEEEecCCCCceecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCCCCEEEEEEE
Confidence 56889999887 899999999888899999999999877421 1247999999998422 237999998
Q ss_pred e---------------CCCchHHHHhhhccCCCceEEEEEccCCCCCCC-C-CCCCeEEEEEcCCChhhHHHHHHHHHHh
Q 005360 379 T---------------EGSWTQKLYQQISSSVDRLEVSVEGPYGPNSAH-F-LRHESLVMVSGGSGISPFISIVRELIFQ 441 (700)
Q Consensus 379 ~---------------~Gg~T~~L~~~~~~~~~~~~v~VeGPyG~~~~~-~-~~~~~vvlIAGG~GITp~lsil~~l~~~ 441 (700)
. .|..|+.|+++..+ +.+.+.||+|.+... . ...++++|||||+||||++|++++++..
T Consensus 106 ~~~~~~~~~~~~~~~~~G~~S~~L~~l~~G----d~v~v~gP~G~f~~~~~~~~~~~~vlIAgGtGIaP~~sml~~~l~~ 181 (307)
T PLN03116 106 RAVYYDPETGKEDPAKKGVCSNFLCDAKPG----DKVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLRRMFME 181 (307)
T ss_pred EEEEecCCcCCCCCccCcchhhhHhhCCCC----CEEEEEEecCCceeCCCCCCCCcEEEEecCccHHHHHHHHHHHHhh
Confidence 5 47899999984433 789999999997541 1 3446899999999999999999998764
Q ss_pred cCCCCCCCCCeEEEEEEECCCCchhhHHHhcccCCCCcccCC-CceEEEEEEeCCCCCCCcchhhhhhhhcc-----CCC
Q 005360 442 SNNNPDYKIPNVHLICVFKKSADLSMLNIMLPVSDAPTELSK-LQLQIEAYVTRDSEQPKTDTLKELQSIWF-----KSN 515 (700)
Q Consensus 442 ~~~~~~~~~~~I~Liw~vR~~~~l~~~d~L~~~~~~~~~l~~-~~l~i~iyvTr~~~~~~~~~~~~~~~~~~-----~p~ 515 (700)
.. ......+++.|+|++|+.+|+.+.|+|.++.. +. .+++++..++++.+++....+...+.+.. .+.
T Consensus 182 ~~-~~~~~~~~v~L~~g~R~~~d~~~~deL~~l~~-----~~~~~~~~~~~~sr~~~~~~g~~g~v~~~l~~~~~~~~~~ 255 (307)
T PLN03116 182 DV-PAFKFGGLAWLFLGVANSDSLLYDDEFERYLK-----DYPDNFRYDYALSREQKNKKGGKMYVQDKIEEYSDEIFKL 255 (307)
T ss_pred cc-ccccCCCcEEEEEecCCcccchHHHHHHHHHH-----hCCCcEEEEEEEccCCcccCCCccchhhHHHHHHHHHHhh
Confidence 32 00112357999999999999999999987653 22 36889888998765543222211111110 011
Q ss_pred CCCCCeEeEeCCcchHHHHHH
Q 005360 516 PSDSPVSGALGCNSWLWLAVV 536 (700)
Q Consensus 516 ~~~~~~~~vcGp~~~~~~~~~ 536 (700)
..+...+.+|||++|+....-
T Consensus 256 ~~~~~~vYiCGp~~mv~~v~~ 276 (307)
T PLN03116 256 LDNGAHIYFCGLKGMMPGIQD 276 (307)
T ss_pred hcCCcEEEEeCCHHHHHHHHH
Confidence 223467899999999864433
No 48
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.90 E-value=1.9e-22 Score=212.99 Aligned_cols=193 Identities=21% Similarity=0.228 Sum_probs=143.0
Q ss_pred eEEEEEEEecCCeEEEEEeCCCC-cccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeCCCchHHHHhhhc
Q 005360 314 ARLLSARALPCGVVELNFSKSPG-LYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTEGSWTQKLYQQIS 392 (700)
Q Consensus 314 ~~vvs~~~l~~~~~~l~~~~~~~-~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~~~~~ 392 (700)
+++++.+.+++++.+++++.+.. ..++||||+.|+++.. .+.|||||++.+. +++.++|.||..|..|+.|.+...
T Consensus 2 ~~I~~~~~~t~~~~~l~l~~~~~~~~~~pGQfv~l~~~~~--~~~rpySias~~~-~~~~i~l~vk~~G~~T~~L~~l~~ 78 (281)
T PRK06222 2 YKILEKEELAPNVFLMEIEAPRVAKKAKPGQFVIVRIDEK--GERIPLTIADYDR-EKGTITIVFQAVGKSTRKLAELKE 78 (281)
T ss_pred cEEEEEEEecCCEEEEEEeCchhhccCCCCeEEEEEeCCC--CCceeeEeeEEcC-CCCEEEEEEEeCCcHHHHHhcCCC
Confidence 36888999999999999986542 4699999999999753 3569999999764 467899999999999999986554
Q ss_pred cCCCceEE-EEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhhHHHh
Q 005360 393 SSVDRLEV-SVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSMLNIM 471 (700)
Q Consensus 393 ~~~~~~~v-~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~~d~L 471 (700)
+ +++ .+.||||++.. ....+++++||||+||||++++++++.++ ..+++++|++|+.+++.+.|++
T Consensus 79 G----d~v~~i~GP~G~~~~-~~~~~~~llIaGGiGiaPl~~l~~~l~~~--------~~~v~l~~g~r~~~d~~~~~el 145 (281)
T PRK06222 79 G----DSILDVVGPLGKPSE-IEKFGTVVCVGGGVGIAPVYPIAKALKEA--------GNKVITIIGARNKDLLILEDEM 145 (281)
T ss_pred C----CEEeeEEcCCCCCcc-cCCCCeEEEEeCcCcHHHHHHHHHHHHHC--------CCeEEEEEecCCHHHhhcHHHH
Confidence 4 678 69999999765 34467999999999999999999998653 2479999999999999999999
Q ss_pred cccCCCCcccCCCceEEEEEEeCCCCCCCcchhhhhhhhc-cCCCCCCCCeEeEeCCcchHHHHH
Q 005360 472 LPVSDAPTELSKLQLQIEAYVTRDSEQPKTDTLKELQSIW-FKSNPSDSPVSGALGCNSWLWLAV 535 (700)
Q Consensus 472 ~~~~~~~~~l~~~~l~i~iyvTr~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~vcGp~~~~~~~~ 535 (700)
.++.. ++ +++.++ .+....+...+.+. ..+.+++...+.+|||++|+....
T Consensus 146 ~~~~~----------~~--~v~~~d-~~~g~~G~v~~~l~~~~~~~~~~~~vy~CGP~~M~~~v~ 197 (281)
T PRK06222 146 KAVSD----------EL--YVTTDD-GSYGRKGFVTDVLKELLESGKKVDRVVAIGPVIMMKFVA 197 (281)
T ss_pred HhhCC----------eE--EEEcCC-CCcCcccchHHHHHHHhhcCCCCcEEEEECCHHHHHHHH
Confidence 75431 11 233332 22222222222221 112222234789999999985543
No 49
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.90 E-value=1.5e-22 Score=209.87 Aligned_cols=191 Identities=19% Similarity=0.176 Sum_probs=141.1
Q ss_pred EEEEEEEecCCeEEEEEeCCCC-cccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeCCCchHHHHhhhcc
Q 005360 315 RLLSARALPCGVVELNFSKSPG-LYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTEGSWTQKLYQQISS 393 (700)
Q Consensus 315 ~vvs~~~l~~~~~~l~~~~~~~-~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~~~~~~ 393 (700)
++++++.+++|+.+++++.++. ..++||||+.|+++.. .++|||||+|.|. +++.++|.||..|+.|+.|.++..+
T Consensus 2 ~v~~~~~~t~d~~~~~l~~~~~~~~~~pGQf~~l~~~~~--~~~~pySi~s~~~-~~~~~~~~vk~~G~~t~~l~~l~~G 78 (248)
T cd06219 2 KILEKEELAPNVKLFEIEAPLIAKKAKPGQFVIVRADEK--GERIPLTIADWDP-EKGTITIVVQVVGKSTRELATLEEG 78 (248)
T ss_pred EEEEEEEeCCCeEEEEEEChhhhccCCCCcEEEEEcCCC--CCccceEeEEEcC-CCCEEEEEEEeCCchHHHHHhcCCC
Confidence 6788889999999999997643 4799999999998642 3679999999875 5678999999999999998665544
Q ss_pred CCCceEE-EEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhhHHHhc
Q 005360 394 SVDRLEV-SVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSMLNIML 472 (700)
Q Consensus 394 ~~~~~~v-~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~~d~L~ 472 (700)
.++ .++||||.+.. ..+.++++|||||+||||++++++++.+. .++++|+|++|+.+++.+.+||.
T Consensus 79 ----~~v~~i~gP~G~~~~-~~~~~~~lliagG~GiaP~~~~l~~~~~~--------~~~v~l~~~~r~~~~~~~~~el~ 145 (248)
T cd06219 79 ----DKIHDVVGPLGKPSE-IENYGTVVFVGGGVGIAPIYPIAKALKEA--------GNRVITIIGARTKDLVILEDEFR 145 (248)
T ss_pred ----CEeeeeecCCCCCee-cCCCCeEEEEeCcccHHHHHHHHHHHHHc--------CCeEEEEEEcCCHHHhhhHHHHH
Confidence 668 69999999854 34568999999999999999999997753 25899999999999999999998
Q ss_pred ccCCCCcccCCCceEEEEEEeCCCCCCCcchhhhhhhhcc-CCCCCCCCeEeEeCCcchHHHH
Q 005360 473 PVSDAPTELSKLQLQIEAYVTRDSEQPKTDTLKELQSIWF-KSNPSDSPVSGALGCNSWLWLA 534 (700)
Q Consensus 473 ~~~~~~~~l~~~~l~i~iyvTr~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~vcGp~~~~~~~ 534 (700)
++.. ++ .+.+++ ++....+...+.+.. .+...+...+.+|||++|+-.+
T Consensus 146 ~l~~----------~~-~~~~~~--~~~~~~g~v~~~l~~~~~~~~~~~~vyiCGP~~m~~~~ 195 (248)
T cd06219 146 AVSD----------EL-IITTDD--GSYGEKGFVTDPLKELIESGEKVDLVIAIGPPIMMKAV 195 (248)
T ss_pred hhcC----------eE-EEEeCC--CCCCccccchHHHHHHHhccCCccEEEEECCHHHHHHH
Confidence 6542 11 223333 222122211111111 1112234578999999998543
No 50
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.90 E-value=1.7e-22 Score=210.99 Aligned_cols=196 Identities=16% Similarity=0.235 Sum_probs=143.5
Q ss_pred ceEEEEEEEecCCeEEEEEeCCCCcccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeCCCchHHHHhhhc
Q 005360 313 RARLLSARALPCGVVELNFSKSPGLYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTEGSWTQKLYQQIS 392 (700)
Q Consensus 313 ~~~vvs~~~l~~~~~~l~~~~~~~~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~~~~~ 392 (700)
.+++++....++++..++++.+ ..++||||+.|.+|..+ .||||+++. +++.++|.||..|+.|..|.+...
T Consensus 7 ~~~v~~~~~~t~~~~~~~~~~~--~~~~pGQ~v~l~~~~~~---~~pySi~~~---~~~~l~~~Vk~~G~~S~~L~~l~~ 78 (261)
T TIGR02911 7 KSEILEIIKHTDIEYTFRMSYD--GPVKPGQFFEVSLPKYG---EAPISVSGI---GEGYIDLTIRRVGKVTDEVFTLKE 78 (261)
T ss_pred eEEEEEEeeccCCEEEEEcCCC--CCCCCCcEEEEEecCCC---ccceecCCC---CCCeEEEEEEeCchhhHHHHcCCC
Confidence 4678888888999999988764 57999999999998633 489999874 357899999999999999986444
Q ss_pred cCCCceEEEEEccCCCC-CCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhhHHHh
Q 005360 393 SSVDRLEVSVEGPYGPN-SAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSMLNIM 471 (700)
Q Consensus 393 ~~~~~~~v~VeGPyG~~-~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~~d~L 471 (700)
+ +++.++||||+. ..+....++++|||||+||||+++++++++++.+ +.++++|+|++|+.+++.+.++|
T Consensus 79 G----d~v~i~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~~~~-----~~~~v~L~~~~r~~~~~~~~~eL 149 (261)
T TIGR02911 79 G----DNLFLRGPYGNGFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNPK-----EIKSLNLILGFKTPDDILFKEDI 149 (261)
T ss_pred C----CEEEEecCCCCCcccCccCCceEEEEecccCcHHHHHHHHHHHhCcc-----cCceEEEEEecCCHHHhhHHHHH
Confidence 3 679999999994 3222345799999999999999999999876432 24689999999999999999999
Q ss_pred cccCCCCcccCCCceEEEEEEeCCCCCCCcchhhhhhhhccC-CCCCCCCeEeEeCCcchHHH
Q 005360 472 LPVSDAPTELSKLQLQIEAYVTRDSEQPKTDTLKELQSIWFK-SNPSDSPVSGALGCNSWLWL 533 (700)
Q Consensus 472 ~~~~~~~~~l~~~~l~i~iyvTr~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~vcGp~~~~~~ 533 (700)
.++.. ..+ ++..++++.+++....+...+.+... ..+.+...+.+|||++|+..
T Consensus 150 ~~l~~------~~~--~~~~~~~~~~~~~~~~g~v~~~l~~~~~~~~~~~~v~lCGp~~mv~~ 204 (261)
T TIGR02911 150 AEWKG------NIN--LTLTLDEAEEDYKGNIGLVTKYIPELTLKDIEEVQAIVVGPPIMMKF 204 (261)
T ss_pred HHHHh------cCc--EEEEEcCCCCCCcCCeeccCHhHHhccCCCccceEEEEECCHHHHHH
Confidence 87652 223 34444444334433333222222211 11123457899999999744
No 51
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=99.90 E-value=3.9e-22 Score=211.15 Aligned_cols=215 Identities=16% Similarity=0.131 Sum_probs=154.8
Q ss_pred ceEEEEEEEec-----CCeEEEEEeCCCCcccCCCcEEEEEeCCCC-----CceeeeeEeecCCCC---CCCeEEEEEEe
Q 005360 313 RARLLSARALP-----CGVVELNFSKSPGLYYNPTSILFVNVPSIS-----KLQWHPFTVTSNCNM---EQDKLSILVKT 379 (700)
Q Consensus 313 ~~~vvs~~~l~-----~~~~~l~~~~~~~~~~~pGq~v~L~~p~~s-----~~q~HPFTIas~p~~---~~~~l~l~IK~ 379 (700)
.+++++++.++ +++.+++++.+..+.|.||||+.|.+|... ....|||||+|.|.+ +++.++|.||.
T Consensus 10 ~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~~l~l~Vk~ 89 (286)
T cd06208 10 IGKVVSNTRLTGPDAPGEVCHIVIDHGGKLPYLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTLSLCVKR 89 (286)
T ss_pred EEEEEeceeccCCCCCcceEEEEEeCCCcccccCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCCEEEEEEEE
Confidence 46788888887 689999998877788999999999876422 134799999998753 24689999998
Q ss_pred C------------CCchHHHHhhhccCCCceEEEEEccCCCCCCCC-CCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCC
Q 005360 380 E------------GSWTQKLYQQISSSVDRLEVSVEGPYGPNSAHF-LRHESLVMVSGGSGISPFISIVRELIFQSNNNP 446 (700)
Q Consensus 380 ~------------Gg~T~~L~~~~~~~~~~~~v~VeGPyG~~~~~~-~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~ 446 (700)
. |..|+.|.++..+ ++|.+.||+|.+.... ...++++|||||+||||+++++++++.+.. ..
T Consensus 90 ~~~~~~~~~~~~~G~~S~~L~~l~~G----d~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~-~~ 164 (286)
T cd06208 90 LVYTDPETDETKKGVCSNYLCDLKPG----DDVQITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREKH-AD 164 (286)
T ss_pred EEEecCCCCceeccchHHHHhhCCCC----CEEEEEeecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhh-cc
Confidence 5 7899999985444 7899999999875422 234689999999999999999999886521 01
Q ss_pred CCCCCeEEEEEEECCCCchhhHHHhcccCCCCcccCCCceEEEEEEeCCCCCCCcchhhhhhhhcc------CCCCCCCC
Q 005360 447 DYKIPNVHLICVFKKSADLSMLNIMLPVSDAPTELSKLQLQIEAYVTRDSEQPKTDTLKELQSIWF------KSNPSDSP 520 (700)
Q Consensus 447 ~~~~~~I~Liw~vR~~~~l~~~d~L~~~~~~~~~l~~~~l~i~iyvTr~~~~~~~~~~~~~~~~~~------~p~~~~~~ 520 (700)
....+++.|+|++|+.+++.+.|++.++.. ....+++++..+|++++.+....+.+.+.+.. .....++.
T Consensus 165 ~~~~~~v~L~~g~r~~~d~~~~~el~~l~~----~~~~~~~~~~~~sr~~~~~~g~~g~v~~~i~~~~~~l~~~l~~~~~ 240 (286)
T cd06208 165 YKFTGLAWLFFGVPNSDSLLYDDELEKYPK----QYPDNFRIDYAFSREQKNADGGKMYVQDRIAEYAEEIWNLLDKDNT 240 (286)
T ss_pred cCCCCCEEEEEEecCccchhHHHHHHHHHH----hCCCcEEEEEEEcCCCCCCCCCceehhhHHHHhHHHHHHHHhcCCc
Confidence 112467999999999999999999887653 12246889899998764443222211111110 00112345
Q ss_pred eEeEeCCcchHHHHHH
Q 005360 521 VSGALGCNSWLWLAVV 536 (700)
Q Consensus 521 ~~~vcGp~~~~~~~~~ 536 (700)
.+.+|||++|+-...-
T Consensus 241 ~vYiCGp~~m~~~v~~ 256 (286)
T cd06208 241 HVYICGLKGMEPGVDD 256 (286)
T ss_pred EEEEeCCchHHHHHHH
Confidence 7899999998865433
No 52
>PRK05713 hypothetical protein; Provisional
Probab=99.89 E-value=2.6e-22 Score=215.14 Aligned_cols=194 Identities=16% Similarity=0.175 Sum_probs=145.9
Q ss_pred cceEEEEEEEecCCeEEEEEeCCCCcccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEe--CCCchHHHHh
Q 005360 312 NRARLLSARALPCGVVELNFSKSPGLYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKT--EGSWTQKLYQ 389 (700)
Q Consensus 312 ~~~~vvs~~~l~~~~~~l~~~~~~~~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~--~Gg~T~~L~~ 389 (700)
.+.++++++.+++|+.+++++.+..+.|+||||+.|.++. ...|||||+|.|. +++.++|.||. .|.+|+.|.+
T Consensus 92 ~~~~V~~~~~~t~dv~~l~l~~~~~~~~~~GQfv~l~~~~---~~~R~ySias~p~-~~~~l~~~I~~~~~G~~s~~l~~ 167 (312)
T PRK05713 92 LPARVVALDWLGGDVLRLRLEPERPLRYRAGQHLVLWTAG---GVARPYSLASLPG-EDPFLEFHIDCSRPGAFCDAARQ 167 (312)
T ss_pred CCeEEEEEecCCCCEEEEEEccCCcCCcCCCCEEEEecCC---CcccccccCcCCC-CCCeEEEEEEEcCCCccchhhhc
Confidence 3578999999999999999987767889999999999864 2579999999885 46789999985 5779998865
Q ss_pred hhccCCCceEEEEEccCCCCCC-CCC-CCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhh
Q 005360 390 QISSSVDRLEVSVEGPYGPNSA-HFL-RHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSM 467 (700)
Q Consensus 390 ~~~~~~~~~~v~VeGPyG~~~~-~~~-~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~ 467 (700)
+..+ +++.+.||+|.... +.. ..++++|||||+||||++|++++++++.. .++++|+|++|+.+|+.+
T Consensus 168 l~~G----d~v~l~~p~gg~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~~------~~~v~l~~g~r~~~d~~~ 237 (312)
T PRK05713 168 LQVG----DLLRLGELRGGALHYDPDWQERPLWLLAAGTGLAPLWGILREALRQGH------QGPIRLLHLARDSAGHYL 237 (312)
T ss_pred CCCC----CEEEEccCCCCceEecCCCCCCcEEEEecCcChhHHHHHHHHHHhcCC------CCcEEEEEEcCchHHhhh
Confidence 4433 67889999985421 122 45789999999999999999999876532 468999999999999999
Q ss_pred HHHhcccCCCCcccCCCceEEEEEEeCCCCCCCcchhhhhhhhccCCCCCCCCeEeEeCCcchHHHH
Q 005360 468 LNIMLPVSDAPTELSKLQLQIEAYVTRDSEQPKTDTLKELQSIWFKSNPSDSPVSGALGCNSWLWLA 534 (700)
Q Consensus 468 ~d~L~~~~~~~~~l~~~~l~i~iyvTr~~~~~~~~~~~~~~~~~~~p~~~~~~~~~vcGp~~~~~~~ 534 (700)
.|+|.++.. +..+++++..+++.. .+ ..... .+ ..+...+.+|||++|+-.+
T Consensus 238 ~~el~~l~~-----~~~~~~~~~~~~~~~-----~~--~l~~~--~~-~~~~~~vyiCGp~~mv~~~ 289 (312)
T PRK05713 238 AEPLAALAG-----RHPQLSVELVTAAQL-----PA--ALAEL--RL-VSRQTMALLCGSPASVERF 289 (312)
T ss_pred HHHHHHHHH-----HCCCcEEEEEECcch-----hh--hhhhc--cC-CCCCeEEEEeCCHHHHHHH
Confidence 999987653 345677776554321 10 11111 11 1234578999999998543
No 53
>PRK05802 hypothetical protein; Provisional
Probab=99.89 E-value=7.9e-22 Score=211.27 Aligned_cols=149 Identities=13% Similarity=0.189 Sum_probs=123.9
Q ss_pred ceEEEEEEEecCCeEEEEEeCCCC---cccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeCCCchHHHHh
Q 005360 313 RARLLSARALPCGVVELNFSKSPG---LYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTEGSWTQKLYQ 389 (700)
Q Consensus 313 ~~~vvs~~~l~~~~~~l~~~~~~~---~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~~ 389 (700)
..++++++.+++++.+++++.|.. ..++||||++|+++..+.+..|||||++.|. +++.+++.||..|..|+.|.+
T Consensus 66 ~~~I~~~~~~t~dv~~l~l~~p~~~~~~~~~PGQFv~l~~~~~~~~~~rP~SI~~~~~-~~g~l~l~ik~~G~~T~~L~~ 144 (320)
T PRK05802 66 ECKIIKKENIEDNLIILTLKVPHKLARDLVYPGSFVFLRNKNSSSFFDVPISIMEADT-EENIIKVAIEIRGVKTKKIAK 144 (320)
T ss_pred eEEEEEEEEecCCEEEEEEECCchhhhccCCCCceEEEEEcCCCCEeEEeeEecccCC-CCCEEEEEEEecChhHHHHhc
Confidence 478999999999999999987643 2479999999999865556779999999875 568899999999999999986
Q ss_pred hhccCCCceEEEEEccCCCCCC---C--CCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCc
Q 005360 390 QISSSVDRLEVSVEGPYGPNSA---H--FLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSAD 464 (700)
Q Consensus 390 ~~~~~~~~~~v~VeGPyG~~~~---~--~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~ 464 (700)
+..+ +++.|.||||+... + ....+++++||||+||||++++++++.++ ..+++++|++|++++
T Consensus 145 l~~G----d~l~v~GP~GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~--------~~~v~li~g~r~~~~ 212 (320)
T PRK05802 145 LNKG----DEILLRGPYWNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSN--------GNKIIVIIDKGPFKN 212 (320)
T ss_pred CCCC----CEEEEeCCCCcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHc--------CCcEEEEEeCCCHHH
Confidence 6554 77999999976421 1 12346899999999999999999999764 237999999999999
Q ss_pred hhhHHHhccc
Q 005360 465 LSMLNIMLPV 474 (700)
Q Consensus 465 l~~~d~L~~~ 474 (700)
+.+.|++.++
T Consensus 213 ~~~~~el~~~ 222 (320)
T PRK05802 213 NFIKEYLELY 222 (320)
T ss_pred HHHHHHHHHh
Confidence 9999988754
No 54
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.89 E-value=3.8e-22 Score=221.40 Aligned_cols=206 Identities=10% Similarity=0.115 Sum_probs=154.3
Q ss_pred ceEEEEEEEecCCeEEEEEeCC--CCcccCCCcEEEEEeCCC-----------------------------CCceeeeeE
Q 005360 313 RARLLSARALPCGVVELNFSKS--PGLYYNPTSILFVNVPSI-----------------------------SKLQWHPFT 361 (700)
Q Consensus 313 ~~~vvs~~~l~~~~~~l~~~~~--~~~~~~pGq~v~L~~p~~-----------------------------s~~q~HPFT 361 (700)
..++++.+.+++++.+++++.+ ....|+||||+.|++|.. +....||||
T Consensus 135 ~~~V~~~~~ls~~i~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~yS 214 (409)
T PRK05464 135 ECTVISNDNVATFIKELVLKIPEGEEVPFRAGGYIQIEAPPHKVKYKDFDIPEEYRGDWDKFNLFRLVSKVDEPVIRAYS 214 (409)
T ss_pred EEEEEEcccCCchhheEEEecCCCCcccccCCceEEEEcccccccccccccchhhhhhhhhccccceeccCCCceeeeec
Confidence 5688899999999999999876 356899999999998742 124579999
Q ss_pred eecCCCCCCCeEEEEEEe-----------CCCchHHHHhhhccCCCceEEEEEccCCCCCCCCCCCCeEEEEEcCCChhh
Q 005360 362 VTSNCNMEQDKLSILVKT-----------EGSWTQKLYQQISSSVDRLEVSVEGPYGPNSAHFLRHESLVMVSGGSGISP 430 (700)
Q Consensus 362 Ias~p~~~~~~l~l~IK~-----------~Gg~T~~L~~~~~~~~~~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GITp 430 (700)
|+|.|. +++.++|.||. .|..|++|+++..+ +++.|+||+|.+... ...++++|||||+||||
T Consensus 215 ias~p~-~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~G----d~v~v~gP~G~f~~~-~~~~~ivlIAgGtGIaP 288 (409)
T PRK05464 215 MANYPE-EKGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKPG----DKVTISGPFGEFFAK-DTDAEMVFIGGGAGMAP 288 (409)
T ss_pred cCCCCC-CCCeEEEEEEEeecCCCcCCCCCCchhhHHHhCCCC----CEEEEEccccCcEec-CCCceEEEEEeccChhH
Confidence 999985 45689999996 48899999975444 679999999998653 45689999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhhHHHhcccCCCCcccCCCceEEEEEEeCCCC--CCCcchhhhhh
Q 005360 431 FISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSMLNIMLPVSDAPTELSKLQLQIEAYVTRDSE--QPKTDTLKELQ 508 (700)
Q Consensus 431 ~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~~d~L~~~~~~~~~l~~~~l~i~iyvTr~~~--~~~~~~~~~~~ 508 (700)
+++++++++++.. ..++++|+|++|+.+++.+.+++.++.. +..++++++.++++.+ .+....+...+
T Consensus 289 ~~sml~~~l~~~~-----~~~~v~L~~g~r~~~d~~~~~el~~l~~-----~~~~~~~~~~~s~~~~~~~~~g~~G~v~~ 358 (409)
T PRK05464 289 MRSHIFDQLKRLK-----SKRKISFWYGARSLREMFYVEDFDQLAA-----ENPNFKWHVALSDPLPEDNWTGYTGFIHN 358 (409)
T ss_pred HHHHHHHHHhCCC-----CCceEEEEEecCCHHHhhHHHHHHHHHH-----hCCCeEEEEEEcCCCCCCCCCCccceeCH
Confidence 9999998876532 2468999999999999999999986643 4467888888876532 22222222111
Q ss_pred ----hhccCCCCCCCCeEeEeCCcchHHHH
Q 005360 509 ----SIWFKSNPSDSPVSGALGCNSWLWLA 534 (700)
Q Consensus 509 ----~~~~~p~~~~~~~~~vcGp~~~~~~~ 534 (700)
.......+.++..+.+|||++|+...
T Consensus 359 ~l~~~~l~~~~~~~~~~vyiCGP~~m~~av 388 (409)
T PRK05464 359 VLYENYLKDHEAPEDCEYYMCGPPMMNAAV 388 (409)
T ss_pred HHHHhhhhhcCCCCCeEEEEECCHHHHHHH
Confidence 11111112234678999999998544
No 55
>PLN02252 nitrate reductase [NADPH]
Probab=99.88 E-value=8.2e-22 Score=234.28 Aligned_cols=211 Identities=18% Similarity=0.199 Sum_probs=160.4
Q ss_pred ccceEEEEEEEecCCeEEEEEeCCCC---cccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeC-------
Q 005360 311 RNRARLLSARALPCGVVELNFSKSPG---LYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTE------- 380 (700)
Q Consensus 311 ~~~~~vvs~~~l~~~~~~l~~~~~~~---~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~------- 380 (700)
+..+++++++.+++++.+++|+.+.. ..++||||++|+++..+....||||++|.+. +++.++|+||..
T Consensus 634 ~~~~~Lv~k~~lS~d~~~f~f~lp~~~~~lgl~pGQhV~l~~~~~g~~~~R~YSpaS~~~-~~g~lel~VK~~~~~~~~~ 712 (888)
T PLN02252 634 KIPCRLVEKISLSHDVRLFRFALPSEDHVLGLPVGKHVFLCATINGKLCMRAYTPTSSDD-EVGHFELVIKVYFKNVHPK 712 (888)
T ss_pred eEEEEEEEEEEccCCeEEEEEEECCCcccCCCCCCCEEEEEEecCCeEEEeeeEecccCC-CCCEEEEEEEEEeccccCc
Confidence 45689999999999999999986543 5689999999999754555789999999985 567899999975
Q ss_pred ----CCchHHHHhhhccCCCceEEEEEccCCCCCCC----------CCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCC
Q 005360 381 ----GSWTQKLYQQISSSVDRLEVSVEGPYGPNSAH----------FLRHESLVMVSGGSGISPFISIVRELIFQSNNNP 446 (700)
Q Consensus 381 ----Gg~T~~L~~~~~~~~~~~~v~VeGPyG~~~~~----------~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~ 446 (700)
|.+|+.|.++..+ .++.|+||+|.+... ....++++|||||+||||+++++++++++..
T Consensus 713 ~p~gG~~S~~L~~L~vG----d~V~V~GP~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~~~~--- 785 (888)
T PLN02252 713 FPNGGLMSQYLDSLPIG----DTIDVKGPLGHIEYAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRDPE--- 785 (888)
T ss_pred cCCCCchhhHHhcCCCC----CEEEEecCccceeecccceeeeccccccCceEEEEecceehhHHHHHHHHHHhccC---
Confidence 8899999765544 689999999985311 1235789999999999999999999986532
Q ss_pred CCCCCeEEEEEEECCCCchhhHHHhcccCCCCcccCCCceEEEEEEeCCC-CCCCcchhhhhhhhc--cCCCCCCCCeEe
Q 005360 447 DYKIPNVHLICVFKKSADLSMLNIMLPVSDAPTELSKLQLQIEAYVTRDS-EQPKTDTLKELQSIW--FKSNPSDSPVSG 523 (700)
Q Consensus 447 ~~~~~~I~Liw~vR~~~~l~~~d~L~~~~~~~~~l~~~~l~i~iyvTr~~-~~~~~~~~~~~~~~~--~~p~~~~~~~~~ 523 (700)
..+++.|+|++|+.+|+.+.++|.++.. ....+++++..+|++. +.|....+.+.+.+. ..+.+.+...+.
T Consensus 786 --d~t~i~Liyg~Rt~~Dil~~eEL~~la~----~~p~~~~v~~vls~~~~~~w~g~~GrV~~~ll~~~l~~~~~~~~vy 859 (888)
T PLN02252 786 --DKTEMSLVYANRTEDDILLREELDRWAA----EHPDRLKVWYVVSQVKREGWKYSVGRVTEAMLREHLPEGGDETLAL 859 (888)
T ss_pred --CCCcEEEEEEECCHHHhhHHHHHHHHHH----hCCCCEEEEEEecCCCcCCCCCcCCcCCHHHHHHhcccCCCCeEEE
Confidence 2568999999999999999999987653 1225789988888764 344433333222211 122334567899
Q ss_pred EeCCcchHHHHH
Q 005360 524 ALGCNSWLWLAV 535 (700)
Q Consensus 524 vcGp~~~~~~~~ 535 (700)
+|||++|+..++
T Consensus 860 iCGPp~Mi~~av 871 (888)
T PLN02252 860 MCGPPPMIEFAC 871 (888)
T ss_pred EeCCHHHHHHHH
Confidence 999999997654
No 56
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.88 E-value=7.5e-22 Score=218.79 Aligned_cols=206 Identities=10% Similarity=0.114 Sum_probs=152.8
Q ss_pred ceEEEEEEEecCCeEEEEEeCCC--CcccCCCcEEEEEeCCC-----------------------------CCceeeeeE
Q 005360 313 RARLLSARALPCGVVELNFSKSP--GLYYNPTSILFVNVPSI-----------------------------SKLQWHPFT 361 (700)
Q Consensus 313 ~~~vvs~~~l~~~~~~l~~~~~~--~~~~~pGq~v~L~~p~~-----------------------------s~~q~HPFT 361 (700)
..++++.+.+++++.+++++.++ +..|+||||+.+.+|.. +....||||
T Consensus 131 ~~~v~~~~~~s~~i~~l~l~~~~~~~~~~~pGQfv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~yS 210 (405)
T TIGR01941 131 ECEVISNDNVATFIKELVLKLPDGESVPFKAGGYIQIEAPPHVVKYADFDIPPEYRGDWEKFNLFDLVSKVDEETVRAYS 210 (405)
T ss_pred eeEEEEcccccchhheEEEecCCCceeeecCCceEEEEcccccccccccccchhhhhhHhhhcchheeccCCCccceeec
Confidence 45788888899999999998753 36899999999998742 123569999
Q ss_pred eecCCCCCCCeEEEEEEe-----------CCCchHHHHhhhccCCCceEEEEEccCCCCCCCCCCCCeEEEEEcCCChhh
Q 005360 362 VTSNCNMEQDKLSILVKT-----------EGSWTQKLYQQISSSVDRLEVSVEGPYGPNSAHFLRHESLVMVSGGSGISP 430 (700)
Q Consensus 362 Ias~p~~~~~~l~l~IK~-----------~Gg~T~~L~~~~~~~~~~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GITp 430 (700)
|+|.|. +++.++|.||. .|..|+.|+++..+ +++.++||+|.+... ...++++|||||+||||
T Consensus 211 ias~p~-~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~G----d~v~i~gP~G~f~l~-~~~~~lvlIAgGtGIaP 284 (405)
T TIGR01941 211 MANYPA-EKGIIKLNVRIATPPFINSDIPPGIMSSYIFSLKPG----DKVTISGPFGEFFAK-DTDAEMVFIGGGAGMAP 284 (405)
T ss_pred CCCCCC-CCCeEEEEEEEeccCcccCCCCCCcHHHHHhcCCCc----CEEEEEeccCCCeec-CCCCCEEEEecCcCcch
Confidence 999985 56789999996 38899999975444 789999999998653 35578999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhhHHHhcccCCCCcccCCCceEEEEEEeCCCC--CCCcchhhhhh
Q 005360 431 FISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSMLNIMLPVSDAPTELSKLQLQIEAYVTRDSE--QPKTDTLKELQ 508 (700)
Q Consensus 431 ~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~~d~L~~~~~~~~~l~~~~l~i~iyvTr~~~--~~~~~~~~~~~ 508 (700)
+++++++++.+.+ ..++++|+|++|+++++.+.+++.++.. +..++++++.++++.+ .+....+...+
T Consensus 285 ~lsmi~~~l~~~~-----~~~~v~l~~g~R~~~dl~~~~el~~l~~-----~~~~~~~~~~~s~~~~~~~~~g~~G~v~~ 354 (405)
T TIGR01941 285 MRSHIFDQLKRLK-----SKRKISFWYGARSLREMFYQEDFDQLEA-----ENPNFVWHVALSDPQPEDNWTGYTGFIHN 354 (405)
T ss_pred HHHHHHHHHhcCC-----CCCeEEEEEecCCHHHHhHHHHHHHHHH-----hCCCeEEEEEeCCCCccCCCCCccceeCH
Confidence 9999998775422 2468999999999999999999987643 4567888888886532 22222222211
Q ss_pred hh----ccCCCCCCCCeEeEeCCcchHHHH
Q 005360 509 SI----WFKSNPSDSPVSGALGCNSWLWLA 534 (700)
Q Consensus 509 ~~----~~~p~~~~~~~~~vcGp~~~~~~~ 534 (700)
.+ .......++..+.+|||++|+...
T Consensus 355 ~l~~~~l~~~~~~~~~~vylCGP~~m~~av 384 (405)
T TIGR01941 355 VLYENYLKDHDAPEDCEFYMCGPPMMNAAV 384 (405)
T ss_pred HHHHhhhcccCCCCCeEEEEeCCHHHHHHH
Confidence 11 111111234568999999998544
No 57
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=99.88 E-value=1.7e-21 Score=204.15 Aligned_cols=199 Identities=17% Similarity=0.132 Sum_probs=145.7
Q ss_pred cCCeEEEEEeCC--CCcccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeC-----------CCchHHHHh
Q 005360 323 PCGVVELNFSKS--PGLYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTE-----------GSWTQKLYQ 389 (700)
Q Consensus 323 ~~~~~~l~~~~~--~~~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~-----------Gg~T~~L~~ 389 (700)
++++.+++|+.+ ...+|.||||+.|.+|. ....|||||+|.|+++++.++|.||.. |..|+.|.+
T Consensus 14 ~~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~~--~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~ 91 (267)
T cd06182 14 PRSTRHLEFDLSGNSVLKYQPGDHLGVIPPN--PLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAG 91 (267)
T ss_pred CCceEEEEEecCCCCcCccCCCCEEEEecCC--CCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhh
Confidence 357899999887 56789999999999875 446799999999864467899999985 889999987
Q ss_pred hhccCCCceEEEEEccCC-CCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCC-Cchhh
Q 005360 390 QISSSVDRLEVSVEGPYG-PNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKS-ADLSM 467 (700)
Q Consensus 390 ~~~~~~~~~~v~VeGPyG-~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~-~~l~~ 467 (700)
+..+ +.+.+.||+| .+..+....+++||||||+||||+++++++++.... + .....++.|+|++|+. +++.+
T Consensus 92 lk~G----d~v~v~~p~G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~-~-~~~~~~v~l~~g~r~~~~d~~~ 165 (267)
T cd06182 92 LQLG----AKVTVFIRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRA-N-GKARGPAWLFFGCRNFASDYLY 165 (267)
T ss_pred CCCC----CEEEEEEecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhh-c-cccCCCEEEEEeCCCCcccccH
Confidence 5544 7899999999 665433345789999999999999999999986311 0 1124689999999999 99999
Q ss_pred HHHhcccCCCCcccCCCceEEEEEEeCCCCCCCc--chhh--hhhhhccCCCCCCCCeEeEeCCcc-hHHHHHH
Q 005360 468 LNIMLPVSDAPTELSKLQLQIEAYVTRDSEQPKT--DTLK--ELQSIWFKSNPSDSPVSGALGCNS-WLWLAVV 536 (700)
Q Consensus 468 ~d~L~~~~~~~~~l~~~~l~i~iyvTr~~~~~~~--~~~~--~~~~~~~~p~~~~~~~~~vcGp~~-~~~~~~~ 536 (700)
.|++.++.. +..+++++..+|+++..+.. .+.. ..+.+.. ...+...+.+|||++ |+....-
T Consensus 166 ~del~~~~~-----~~~~~~~~~~~S~~~~~~~~~v~~~l~~~~~~l~~--~l~~~~~vyvCGp~~~m~~~v~~ 232 (267)
T cd06182 166 REELQEALK-----DGALTRLDVAFSREQAEPKVYVQDKLKEHAEELRR--LLNEGAHIYVCGDAKSMAKDVED 232 (267)
T ss_pred HHHHHHHHh-----CCCcceEEEEEccCCCCCceehHHHHHHhHHHHHH--HHhcCCEEEEECCcccchHHHHH
Confidence 999987653 44578888888876533111 1110 0011100 011334899999999 9865443
No 58
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=99.88 E-value=1.2e-21 Score=212.28 Aligned_cols=209 Identities=16% Similarity=0.184 Sum_probs=150.4
Q ss_pred EEEEEEEec-----CCeEEEEEeCCCCcccCCCcEEEEEeCCCC----CceeeeeEeecCCCC---CCCeEEEEEEe---
Q 005360 315 RLLSARALP-----CGVVELNFSKSPGLYYNPTSILFVNVPSIS----KLQWHPFTVTSNCNM---EQDKLSILVKT--- 379 (700)
Q Consensus 315 ~vvs~~~l~-----~~~~~l~~~~~~~~~~~pGq~v~L~~p~~s----~~q~HPFTIas~p~~---~~~~l~l~IK~--- 379 (700)
++++.+.+. +++.++++..+..+.+.||||+.|.+|+.. ....|||||+|+|.. ++++++|+||+
T Consensus 94 ~v~~n~~i~~~~~~~~v~~l~l~~~~~~~f~~GQfv~I~~~g~~~~g~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~~y 173 (367)
T PLN03115 94 RCLLNTKITGDDAPGETWHMVFSTEGEIPYREGQSIGVIPDGIDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVY 173 (367)
T ss_pred EEEeecccccCCCCCceEEEEEcCCCCCCcCCCCEEEEEcCCcCCCCCcCceeeeecCCCCcccCCCCCEEEEEEEEEEe
Confidence 555555554 388999998777788999999999987432 235799999999742 24689999996
Q ss_pred --------CCCchHHHHhhhccCCCceEEEEEccCCCCCCC-CCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCC
Q 005360 380 --------EGSWTQKLYQQISSSVDRLEVSVEGPYGPNSAH-FLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKI 450 (700)
Q Consensus 380 --------~Gg~T~~L~~~~~~~~~~~~v~VeGPyG~~~~~-~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~ 450 (700)
.|..|..|.++..+ +.+.+.||+|.+... ....++++|||||+||||+++++++++.+...+ ....
T Consensus 174 ~~~~g~~~~G~~S~~L~~Lk~G----d~V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~~~~-~~~~ 248 (367)
T PLN03115 174 TNDQGEIVKGVCSNFLCDLKPG----AEVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDD-YKFN 248 (367)
T ss_pred ecCCCccCCeehHhhHhhCCCc----CEEEEEeecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhcccc-ccCC
Confidence 37789999985554 789999999987532 233458999999999999999999876542201 0113
Q ss_pred CeEEEEEEECCCCchhhHHHhcccCCCCcccCCCceEEEEEEeCCCCCCCcchhhhhhhhcc-----CC-CCCCCCeEeE
Q 005360 451 PNVHLICVFKKSADLSMLNIMLPVSDAPTELSKLQLQIEAYVTRDSEQPKTDTLKELQSIWF-----KS-NPSDSPVSGA 524 (700)
Q Consensus 451 ~~I~Liw~vR~~~~l~~~d~L~~~~~~~~~l~~~~l~i~iyvTr~~~~~~~~~~~~~~~~~~-----~p-~~~~~~~~~v 524 (700)
+++.|+|++|+.+|+.+.|+|.++.. ....+++++..+||+++++....+.+.+.+.. .. -..++..+.+
T Consensus 249 ~~v~Lf~G~R~~~dlly~dELe~l~~----~~p~~f~v~~a~SR~~~~~~G~kgyVqd~i~e~~e~l~~~l~~~~~~vYi 324 (367)
T PLN03115 249 GLAWLFLGVPTSSSLLYKEEFEKMKE----KAPENFRLDFAVSREQTNAKGEKMYIQTRMAEYAEELWELLKKDNTYVYM 324 (367)
T ss_pred CcEEEEEccCCHHHhhHHHHHHHHHH----hCCCCEEEEEEEcCCCcccCCcceeehhHHHHHHHHHHhhcccCCeEEEE
Confidence 57999999999999999999987642 12347999999999876654333222221110 00 1134578999
Q ss_pred eCCcchHH
Q 005360 525 LGCNSWLW 532 (700)
Q Consensus 525 cGp~~~~~ 532 (700)
|||++|+-
T Consensus 325 CGp~~M~~ 332 (367)
T PLN03115 325 CGLKGMEK 332 (367)
T ss_pred eCCHHHHH
Confidence 99999864
No 59
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.87 E-value=6.7e-21 Score=195.77 Aligned_cols=135 Identities=20% Similarity=0.321 Sum_probs=116.2
Q ss_pred EEEEEEEecCCeEEEEEeCCCCcccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeCCCchHHHHhhhccC
Q 005360 315 RLLSARALPCGVVELNFSKSPGLYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTEGSWTQKLYQQISSS 394 (700)
Q Consensus 315 ~vvs~~~l~~~~~~l~~~~~~~~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~~~~~~~ 394 (700)
++.+++.+++++.+++++.+ ..++||||+.|++|.. ..||||++|.| +.++|.||..|.+|++|++...+
T Consensus 2 ~v~~~~~~t~~~~~~~l~~~--~~~~pGQ~v~l~~~~~---~~~~~Si~s~~----~~l~~~v~~~G~~s~~L~~l~~G- 71 (233)
T cd06220 2 TIKEVIDETPTVKTFVFDWD--FDFKPGQFVMVWVPGV---DEIPMSLSYID----GPNSITVKKVGEATSALHDLKEG- 71 (233)
T ss_pred EEEEEEEEcCCEEEEEEecC--CCCCCCceEEEEeCCC---CcceeEEecCC----CeEEEEEEecChHHHHHHhcCCC-
Confidence 67889999999999999874 4799999999999853 35999999986 68999999999999999985443
Q ss_pred CCceEEEEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhhHHHhcc
Q 005360 395 VDRLEVSVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSMLNIMLP 473 (700)
Q Consensus 395 ~~~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~~d~L~~ 473 (700)
+++.++||||.... .. .+++++||||+||||++++++++.++ ++++|+|++|+++|+.+.++|.+
T Consensus 72 ---d~v~i~gP~G~~f~-~~-~~~~vliAgGtGitP~~sil~~~~~~---------~~i~l~~~~r~~~d~~~~~eL~~ 136 (233)
T cd06220 72 ---DKLGIRGPYGNGFE-LV-GGKVLLIGGGIGIAPLAPLAERLKKA---------ADVTVLLGARTKEELLFLDRLRK 136 (233)
T ss_pred ---CEEEEECcCCCCcc-CC-CCeEEEEecCcChHHHHHHHHHHHhc---------CCEEEEEecCChHHChhHHHHhh
Confidence 67999999998432 22 68999999999999999999998642 57999999999999999999874
No 60
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.87 E-value=6.2e-21 Score=198.05 Aligned_cols=194 Identities=16% Similarity=0.236 Sum_probs=147.3
Q ss_pred eEEEEEEEecCCeEEEEEeCCCC-cccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCe--EEEEEEeCCCchHHHHhh
Q 005360 314 ARLLSARALPCGVVELNFSKSPG-LYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDK--LSILVKTEGSWTQKLYQQ 390 (700)
Q Consensus 314 ~~vvs~~~l~~~~~~l~~~~~~~-~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~--l~l~IK~~Gg~T~~L~~~ 390 (700)
+++.+++.+++++.+++++.+.. +.++||||+.|+.|. ...+|||+++.+. +++. +.+.+++.|..|+.+.++
T Consensus 10 ~~I~~~~~is~~~~~l~~~~~~~~~~~~pGQfv~l~~~~---~~~~P~si~~~~~-~~g~~~l~i~~~~~G~~T~~i~~~ 85 (252)
T COG0543 10 YKVVEKEEISPDTFLLRLRLPFVALTFKPGQFVMLRVPG---GVRRPYSLASAPD-DKGELELHIRVYEVGKVTKYIFGL 85 (252)
T ss_pred cEEEEEEEecCceEEEEEeccccccccCCCcEEEEEeCC---CcEEEeeeccCCC-cCCcEEEEEEEEeCChHHHHHhhc
Confidence 68999999999999999987654 579999999999997 5789999999985 4554 555555599999999998
Q ss_pred hccCCCceEEEEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhhHHH
Q 005360 391 ISSSVDRLEVSVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSMLNI 470 (700)
Q Consensus 391 ~~~~~~~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~~d~ 470 (700)
..+ +.+.++||||+..+.....+.+++||||+|++|++++++++.++. ...+|+++|++|+++++.+.++
T Consensus 86 k~g----d~i~v~GP~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~------~~~~V~~~~G~~~~~dl~~~~e 155 (252)
T COG0543 86 KEG----DKIRVRGPLGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKG------DANKVTLLYGARTAKDLLLLDE 155 (252)
T ss_pred cCC----CEEEEEcCCCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcC------CCceEEEEEeccChhhcccHHH
Confidence 655 569999999999764334455999999999999999999998642 2479999999999999999999
Q ss_pred hcccCCCCcccCCCceEEEEEEeCCCCCCCcchhhhhhhhccCCCCCCCCeEeEeCCcchHHH
Q 005360 471 MLPVSDAPTELSKLQLQIEAYVTRDSEQPKTDTLKELQSIWFKSNPSDSPVSGALGCNSWLWL 533 (700)
Q Consensus 471 L~~~~~~~~~l~~~~l~i~iyvTr~~~~~~~~~~~~~~~~~~~p~~~~~~~~~vcGp~~~~~~ 533 (700)
+.++.. + +++..++ +++....+.+.........+.+...+.+|||+.|+-.
T Consensus 156 l~~~~~------~---~~~~~~~---~~~~G~~G~v~~~~~~~~~~~~~~~v~~cGp~~M~~~ 206 (252)
T COG0543 156 LEELAE------K---EVHPVTD---DGWKGRKGFVTTDVLKELLDLEVDDVYICGPPAMVKA 206 (252)
T ss_pred HHHhhc------C---cEEEEEC---CCCCccCcceeHHHHhhhccccCCEEEEECCHHHHHH
Confidence 987652 1 3433333 2454444433222222211125678999999999844
No 61
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=99.87 E-value=7.7e-21 Score=201.44 Aligned_cols=203 Identities=12% Similarity=0.096 Sum_probs=144.8
Q ss_pred ccceEEEEEEEec----CCeEEEEEeCCC-------CcccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEe
Q 005360 311 RNRARLLSARALP----CGVVELNFSKSP-------GLYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKT 379 (700)
Q Consensus 311 ~~~~~vvs~~~l~----~~~~~l~~~~~~-------~~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~ 379 (700)
..++++++.+.++ +++..++++.++ ...|.||||+.|..++ ....|||||+|.| +++.++|.||.
T Consensus 45 ~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~pGQ~v~v~~~g--~~~~R~YSias~p--~~g~l~l~Vk~ 120 (289)
T cd06201 45 TKALELVERKDYGAAVQAPTAILRFKPAKRKLSGKGLPSFEAGDLLGILPPG--SDVPRFYSLASSS--SDGFLEICVRK 120 (289)
T ss_pred ccceEEEeeeecCCCCCCccEEEEEeCCCcccccCCCCCcCccCEEEEecCC--CCCCceEecCCCC--CCCeEEEEEEe
Confidence 4567899999888 589999998765 4569999999998654 3356999999987 35789999997
Q ss_pred --CCCchHHHHhhhccCCCceEEEEE-ccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEE
Q 005360 380 --EGSWTQKLYQQISSSVDRLEVSVE-GPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLI 456 (700)
Q Consensus 380 --~Gg~T~~L~~~~~~~~~~~~v~Ve-GPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Li 456 (700)
.|..|+.|+++..+ .++.+. +|+|.+... ...++++|||||+||||+++++++.. ..++++|+
T Consensus 121 ~~~G~~S~~L~~l~~G----d~v~v~~~~~g~F~~~-~~~~~lvlIAgGtGIaP~~s~l~~~~---------~~~~v~L~ 186 (289)
T cd06201 121 HPGGLCSGYLHGLKPG----DTIKAFIRPNPSFRPA-KGAAPVILIGAGTGIAPLAGFIRANA---------ARRPMHLY 186 (289)
T ss_pred CCCccchhhHhhCCCc----CEEEEEeccCCCccCC-CCCCCEEEEecCcCHHHHHHHHHhhh---------ccCCEEEE
Confidence 68899999975444 567776 578887642 44578999999999999999998742 13579999
Q ss_pred EEECCCC-chhhHHHhcccCCCCcccCCCceEEEEEEeCCCCCCCcchhhhhhhhccCCCCCCCCeEeEeCCcchHHHHH
Q 005360 457 CVFKKSA-DLSMLNIMLPVSDAPTELSKLQLQIEAYVTRDSEQPKTDTLKELQSIWFKSNPSDSPVSGALGCNSWLWLAV 535 (700)
Q Consensus 457 w~vR~~~-~l~~~d~L~~~~~~~~~l~~~~l~i~iyvTr~~~~~~~~~~~~~~~~~~~p~~~~~~~~~vcGp~~~~~~~~ 535 (700)
|++|+++ |+.+.+++.++.. +..+++++..++++.+.....+..............+...+.+|||++|+-...
T Consensus 187 ~g~r~~~~d~~~~~eL~~l~~-----~~~~~~~~~~~s~~~~~g~v~~~l~~~~~~l~~~~~~~~~vyiCGp~~M~~~v~ 261 (289)
T cd06201 187 WGGRDPASDFLYEDELDQYLA-----DGRLTQLHTAFSRTPDGAYVQDRLRADAERLRRLIEDGAQIMVCGSRAMAQGVA 261 (289)
T ss_pred EEecCcccchHHHHHHHHHHH-----cCCCceEEEEECCCCCcccchhHHHHhHHHHHHHHHCCcEEEEECCHHHHHHHH
Confidence 9999985 8888999987653 344567777777754211111110000000000112357899999999885443
Q ss_pred H
Q 005360 536 V 536 (700)
Q Consensus 536 ~ 536 (700)
-
T Consensus 262 ~ 262 (289)
T cd06201 262 A 262 (289)
T ss_pred H
Confidence 3
No 62
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=99.86 E-value=8.7e-21 Score=196.40 Aligned_cols=191 Identities=12% Similarity=0.077 Sum_probs=136.5
Q ss_pred CeEEEEEeCC-CCcccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeC-------CCchHHHHhhhccCCC
Q 005360 325 GVVELNFSKS-PGLYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTE-------GSWTQKLYQQISSSVD 396 (700)
Q Consensus 325 ~~~~l~~~~~-~~~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~-------Gg~T~~L~~~~~~~~~ 396 (700)
++.+++++.+ +...|+||||+.|.++. ..+.|||||+|.|. ++.++|.||.. |..|+.|++.++.
T Consensus 17 ~v~~l~l~~~~~~~~f~pGQ~v~l~~~~--~~~~R~YSIas~p~--~~~l~l~Vk~~~~~~~~~G~~S~~L~~~~~~--- 89 (245)
T cd06200 17 PLWRLRLTPPDAGAQWQAGDIAEIGPRH--PLPHREYSIASLPA--DGALELLVRQVRHADGGLGLGSGWLTRHAPI--- 89 (245)
T ss_pred ceEEEEEecCCCCCCccCCcEEEecCCC--CCCCcceEeccCCC--CCEEEEEEEEeccCCCCCeeechhhhhCCCC---
Confidence 5888999876 56789999999999764 35779999999984 57899999985 4599999987543
Q ss_pred ceEEEEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCC-CchhhHHHhcccC
Q 005360 397 RLEVSVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKS-ADLSMLNIMLPVS 475 (700)
Q Consensus 397 ~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~-~~l~~~d~L~~~~ 475 (700)
+.++.+.||.|.........++++|||||+||||++|+++++.... .+++.|++++|+. +|+.+.||+.++.
T Consensus 90 Gd~v~i~gp~gg~F~~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~-------~~~~~l~~g~r~~~~d~~~~~el~~~~ 162 (245)
T cd06200 90 GASVALRLRENPGFHLPDDGRPLILIGNGTGLAGLRSHLRARARAG-------RHRNWLLFGERQAAHDFFCREELEAWQ 162 (245)
T ss_pred CCEEEEEecCCCcccCCCCCCCEEEEecCcChHHHHHHHHHHHhcc-------CCCeEEEEecCCccccHhHHHHHHHHH
Confidence 3789999987654332234578999999999999999999987542 2478999999998 4888999998765
Q ss_pred CCCcccCCCceEEEEEEeCCCCCCCcchhhhhhhhc-cCCCCCCCCeEeEeCCc-chHHHH
Q 005360 476 DAPTELSKLQLQIEAYVTRDSEQPKTDTLKELQSIW-FKSNPSDSPVSGALGCN-SWLWLA 534 (700)
Q Consensus 476 ~~~~~l~~~~l~i~iyvTr~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~vcGp~-~~~~~~ 534 (700)
. +..+.+++..+|+++++.........+... ..+...++..+.+|||+ +|+--.
T Consensus 163 ~-----~~~~~~~~~~~s~~~~~~~~v~~~l~~~~~~~~~~~~~~~~vy~CGp~~~m~~~v 218 (245)
T cd06200 163 A-----AGHLARLDLAFSRDQAQKRYVQDRLRAAADELRAWVAEGAAIYVCGSLQGMAPGV 218 (245)
T ss_pred H-----CCCcceEEEEEccCCCCCcchHHHHHHhHHHHHHHHHCCcEEEEECCchhhhHHH
Confidence 3 445677788888765321111111111100 00011134678999999 887543
No 63
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.86 E-value=5.9e-22 Score=190.50 Aligned_cols=79 Identities=29% Similarity=0.541 Sum_probs=56.5
Q ss_pred CCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhhHHHhcccCCCCcccCC-CceEEEEEEeC
Q 005360 416 HESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSMLNIMLPVSDAPTELSK-LQLQIEAYVTR 494 (700)
Q Consensus 416 ~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~~d~L~~~~~~~~~l~~-~~l~i~iyvTr 494 (700)
|+++||||||+||||++|++++++++.+ ++....++|+|+|++|+.+++.|++++++.+. .... .++++++|+|+
T Consensus 1 y~~vvlvAGG~GIt~~l~~l~~l~~~~~-~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~---~~~~~~~~~~~iyvT~ 76 (156)
T PF08030_consen 1 YDNVVLVAGGSGITPILPILRDLLQRQN-RGSSRTRRIKLVWVVRDADELEWFSPELNELL---ELDRLGNVEVHIYVTR 76 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHHHHHHHHHHH-TT-----EEEEEEEES-TTTTHHHHHHHHHHH---HHHHHTSEEEEEEETT
T ss_pred CCEEEEEecCcCHHHHHHHHHHHHHhhc-cccccccceEEEEeeCchhhhhhhhHHHHHHH---HHhccccceEEEEEcC
Confidence 7899999999999999999999998754 34456789999999999999999765443322 1122 47999999999
Q ss_pred CCCC
Q 005360 495 DSEQ 498 (700)
Q Consensus 495 ~~~~ 498 (700)
+.+.
T Consensus 77 ~~~~ 80 (156)
T PF08030_consen 77 ESSA 80 (156)
T ss_dssp ----
T ss_pred Cccc
Confidence 9743
No 64
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=99.85 E-value=4e-20 Score=204.68 Aligned_cols=213 Identities=15% Similarity=0.105 Sum_probs=148.8
Q ss_pred cceEEEEEEEec-----CCeEEEEEeCCC-CcccCCCcEEEEEeCCCC----CceeeeeEeecCCCCC---CCeEEEEEE
Q 005360 312 NRARLLSARALP-----CGVVELNFSKSP-GLYYNPTSILFVNVPSIS----KLQWHPFTVTSNCNME---QDKLSILVK 378 (700)
Q Consensus 312 ~~~~vvs~~~l~-----~~~~~l~~~~~~-~~~~~pGq~v~L~~p~~s----~~q~HPFTIas~p~~~---~~~l~l~IK 378 (700)
...++++.+.++ +++.+++++.+. ...+.||||+.|.+|..+ ....|||||+|.|+++ .+.++|.||
T Consensus 143 ~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~~~~g~~~~~R~YSIas~~~~~~~~~~~l~l~Vk 222 (411)
T TIGR03224 143 ITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTDASGKPHYARMYSVASPRNGERPGYNNLALTVK 222 (411)
T ss_pred eEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCcCcCCCcCcceeeeecCCCCccCCCCCEEEEEEE
Confidence 346888888884 489999998755 578999999999988532 2357999999986322 147999999
Q ss_pred eC----------CCchHHHHhhhccCCCceEEEEEccCCCCCCC-CCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCC
Q 005360 379 TE----------GSWTQKLYQQISSSVDRLEVSVEGPYGPNSAH-FLRHESLVMVSGGSGISPFISIVRELIFQSNNNPD 447 (700)
Q Consensus 379 ~~----------Gg~T~~L~~~~~~~~~~~~v~VeGPyG~~~~~-~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~ 447 (700)
.. |..|++|.++..+ +++.+.||+|..... ....++++|||||+||||++++++++.+... .
T Consensus 223 ~v~~~~~g~~~~G~~S~~L~~lk~G----d~v~v~GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~~~---~ 295 (411)
T TIGR03224 223 RVTTDHQGNAVRGVASNYLCDLKKG----DKVQVIGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRRD---H 295 (411)
T ss_pred EEEecCCCCcCcccchhHHhcCCCc----CEEEEEeccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHHhh---c
Confidence 74 7799999985544 789999999986431 2234689999999999999999999875421 0
Q ss_pred CCCCeEEEEEEECCCCchhhHHHhcccCCCCcccCCCceEEEEEEeCCCCCCCcchhhhhhhhccC---CCCCCCCeEeE
Q 005360 448 YKIPNVHLICVFKKSADLSMLNIMLPVSDAPTELSKLQLQIEAYVTRDSEQPKTDTLKELQSIWFK---SNPSDSPVSGA 524 (700)
Q Consensus 448 ~~~~~I~Liw~vR~~~~l~~~d~L~~~~~~~~~l~~~~l~i~iyvTr~~~~~~~~~~~~~~~~~~~---p~~~~~~~~~v 524 (700)
....++.|+|++|+.+++.+.++|.++.. ..+++++.++++++++........+..... --.+++..+.+
T Consensus 296 ~~~~~v~L~~G~Rt~~dl~y~~eL~~l~~-------~~~~~~~~~sr~~~~~~g~V~d~l~~~~~~v~~ll~~~~~~vYi 368 (411)
T TIGR03224 296 GEGGKLMLFFGARTKEELPYFGPLQKLPK-------DFIDINFAFSRTPEQPKRYVQDAIRERAADVAALLKDPNTYIYI 368 (411)
T ss_pred CCCCCEEEEEecCccccchHHHHHHHHHh-------cCceEEEEeccCCccCcccHhhHHHHhHHHHHHHHhcCCcEEEE
Confidence 12568999999999999999999876542 234566677775433222111111110000 00113467999
Q ss_pred eCCcchHHHHHHHH
Q 005360 525 LGCNSWLWLAVVIA 538 (700)
Q Consensus 525 cGp~~~~~~~~~~~ 538 (700)
|||++|+.-..-.+
T Consensus 369 CGp~~M~~~v~~~L 382 (411)
T TIGR03224 369 CGLKGMEEGVLDAF 382 (411)
T ss_pred ECCHHHHHHHHHHH
Confidence 99999975544433
No 65
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.81 E-value=5.4e-19 Score=210.57 Aligned_cols=193 Identities=17% Similarity=0.178 Sum_probs=143.4
Q ss_pred eEEEEEEEecCCeEEEEEeCCCC-cccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeCCCchHHHHhhhc
Q 005360 314 ARLLSARALPCGVVELNFSKSPG-LYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTEGSWTQKLYQQIS 392 (700)
Q Consensus 314 ~~vvs~~~l~~~~~~l~~~~~~~-~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~~~~~ 392 (700)
+++++.+.+++++.+++++.|.. ..++||||+.|+++..+ +.|||||++.+. +++.++|.||..|..|+.|+++..
T Consensus 2 ~~I~~~~~~t~~v~~l~l~~p~~~~~~~pGQFv~l~~~~~~--~~rp~Si~~~~~-~~g~i~~~vk~vG~~T~~L~~l~~ 78 (752)
T PRK12778 2 NKIVEKEIFSEKVFLLEIEAPLIAKSRKPGQFVIVRVGEKG--ERIPLTIADADP-EKGTITLVIQEVGLSTTKLCELNE 78 (752)
T ss_pred CEEEEEEEEcCCEEEEEEeCCchhccCCCCeeEEEEeCCCC--CeeEEEeeeeCC-CCCEEEEEEEEcCchHHHHhcCCC
Confidence 47888899999999999986542 46899999999997533 569999999875 567899999999999999997655
Q ss_pred cCCCceEE-EEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhhHHHh
Q 005360 393 SSVDRLEV-SVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSMLNIM 471 (700)
Q Consensus 393 ~~~~~~~v-~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~~d~L 471 (700)
+ +.+ .+.||||++.. ....+++++||||+||||++++++++.++ ..+++++|++|+.+++.+.|++
T Consensus 79 G----d~v~~v~GP~G~~~~-~~~~~~~llvaGG~GiaPl~~l~~~l~~~--------~~~v~l~~g~r~~~~l~~~~el 145 (752)
T PRK12778 79 G----DYITDVVGPLGNPSE-IENYGTVVCAGGGVGVAPMLPIVKALKAA--------GNRVITILGGRSKELIILEDEM 145 (752)
T ss_pred C----CEeCeEeCCCCCCcc-CCCCCeEEEEECCEeHHHHHHHHHHHHHC--------CCeEEEEeccCCHHHhhhHHHH
Confidence 4 678 79999999875 34457999999999999999999998764 2479999999999999999999
Q ss_pred cccCCCCcccCCCceEEEEEEeCCCCCCCcchhhhhhhhc-cCCCCCCCCeEeEeCCcchHHHHH
Q 005360 472 LPVSDAPTELSKLQLQIEAYVTRDSEQPKTDTLKELQSIW-FKSNPSDSPVSGALGCNSWLWLAV 535 (700)
Q Consensus 472 ~~~~~~~~~l~~~~l~i~iyvTr~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~vcGp~~~~~~~~ 535 (700)
.++.. ++ ...|. + .+....+...+.+. ..+...+...+.+|||++||....
T Consensus 146 ~~~~~----------~~-~~~t~-d-g~~g~~G~v~~~l~~~~~~~~~~~~vy~CGP~~M~~~v~ 197 (752)
T PRK12778 146 RESSD----------EV-IIMTD-D-GSYGRKGLVTDGLEEVIKRETKVDKVFAIGPAIMMKFVC 197 (752)
T ss_pred HhhcC----------eE-EEEEC-C-CCCCCcccHHHHHHHHhhcCCCCCEEEEECCHHHHHHHH
Confidence 75531 11 12232 2 22222222211111 111111234789999999986543
No 66
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.81 E-value=7.3e-19 Score=217.17 Aligned_cols=211 Identities=12% Similarity=0.090 Sum_probs=153.2
Q ss_pred ccceEEEEEE---EecCCeEEEEEeCCCC---cccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEe-CCCc
Q 005360 311 RNRARLLSAR---ALPCGVVELNFSKSPG---LYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKT-EGSW 383 (700)
Q Consensus 311 ~~~~~vvs~~---~l~~~~~~l~~~~~~~---~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~-~Gg~ 383 (700)
|.++++.+++ ..++++..++|+.+.. ..+.||||+.|+++..+....|+||++|.|+ +++.++|.||. .|.+
T Consensus 914 w~~~~l~~~~~~~~~~~~~~~~~f~lp~~~~~~~~~pGQfv~l~~~~~g~~~~R~YS~~S~p~-~~~~i~l~Vr~~~G~~ 992 (1167)
T PTZ00306 914 WTTVVVREVREGGQFGTGSRVLRFNLPGALQRSGLTLGQFIAIRGDWDGQQLIGYYSPITLPD-DLGVISILARGDKGTL 992 (1167)
T ss_pred eEEEEEEEEeccccccCCeEEEEEECCCcccccCCCCCeEEEEEeeeCCeEEEEEeccCCCCC-CCCeEEEEEEcCCChh
Confidence 4567788776 3577888888876643 4699999999998643444579999999985 56789999998 5889
Q ss_pred hHHHHhhhccCCCceEEEEEccCCCCC----------CCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeE
Q 005360 384 TQKLYQQISSSVDRLEVSVEGPYGPNS----------AHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNV 453 (700)
Q Consensus 384 T~~L~~~~~~~~~~~~v~VeGPyG~~~----------~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I 453 (700)
|+.|.++..+ +++.+.||+|... .+....++++|||||+||||+++++++++++.. ....+++
T Consensus 993 S~~L~~l~~G----d~v~v~gp~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~~~~---~~~~~~i 1065 (1167)
T PTZ00306 993 KEWISALRPG----DSVEMKACGGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKPY---VDSIESI 1065 (1167)
T ss_pred HHHHhhCCCC----CEEEEeCCcCccccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHhCcc---cCCCceE
Confidence 9999765544 7899999988421 112334789999999999999999999886521 0124689
Q ss_pred EEEEEECCCCchhhHHHhcccCCCCcccCCCceEEEEEEeCCCCCCCcchhhhhhh-h-ccCCCCCCCCeEeEeCCcchH
Q 005360 454 HLICVFKKSADLSMLNIMLPVSDAPTELSKLQLQIEAYVTRDSEQPKTDTLKELQS-I-WFKSNPSDSPVSGALGCNSWL 531 (700)
Q Consensus 454 ~Liw~vR~~~~l~~~d~L~~~~~~~~~l~~~~l~i~iyvTr~~~~~~~~~~~~~~~-~-~~~p~~~~~~~~~vcGp~~~~ 531 (700)
+|+|++|+++++.+.++|.++.. ..+.+++++..+++++++|....+.+.+. + ...+.+..+..+.+|||++|+
T Consensus 1066 ~Llyg~r~~~dl~~~~eL~~l~~----~~~~~f~~~~~ls~~~~~w~~~~G~i~~~~l~~~l~~~~~~~~vyiCGP~~mv 1141 (1167)
T PTZ00306 1066 RLIYAAEDVSELTYRELLESYRK----ENPGKFKCHFVLNNPPEGWTDGVGFVDRALLQSALQPPSKDLLVAICGPPVMQ 1141 (1167)
T ss_pred EEEEEeCCHHHhhHHHHHHHHHH----HCCCCEEEEEEECCCCcccCCCCCCCCHHHHHHhcCCCCCCeEEEEeCCHHHH
Confidence 99999999999999999987653 12336899988887665554333322222 1 112334456778999999997
Q ss_pred HH
Q 005360 532 WL 533 (700)
Q Consensus 532 ~~ 533 (700)
-.
T Consensus 1142 ~~ 1143 (1167)
T PTZ00306 1142 RA 1143 (1167)
T ss_pred HH
Confidence 43
No 67
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.80 E-value=1.3e-18 Score=179.05 Aligned_cols=186 Identities=11% Similarity=0.054 Sum_probs=134.1
Q ss_pred EEEEEecCCeEEEEEeCCCC---cccCCCcEEEEEeCCCC-------------------CceeeeeEeecCCCCCCCeEE
Q 005360 317 LSARALPCGVVELNFSKSPG---LYYNPTSILFVNVPSIS-------------------KLQWHPFTVTSNCNMEQDKLS 374 (700)
Q Consensus 317 vs~~~l~~~~~~l~~~~~~~---~~~~pGq~v~L~~p~~s-------------------~~q~HPFTIas~p~~~~~~l~ 374 (700)
++++.+++++++++++.+.. ..+.||||+.|.+|..+ ....|+||+++.+. ++++++
T Consensus 2 ~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~-~~~~l~ 80 (235)
T cd06193 2 VRVERLTPHMRRITLGGPDLAGFPSDGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDP-EAGELD 80 (235)
T ss_pred ceeEecCCCEEEEEEecCccccCCCCCCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcC-CCCEEE
Confidence 56788899999999987654 57899999999997643 45789999999875 568899
Q ss_pred EEEEeC---CCchHHHHhhhccCCCceEEEEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCC
Q 005360 375 ILVKTE---GSWTQKLYQQISSSVDRLEVSVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIP 451 (700)
Q Consensus 375 l~IK~~---Gg~T~~L~~~~~~~~~~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~ 451 (700)
|.||.. |..|+.+.+...+ +++.+.||+|.+... ...++++|||||+||||++++++++.. ..
T Consensus 81 ~~v~~~~~~G~~s~~l~~l~~G----d~v~v~gP~G~~~~~-~~~~~~vlia~GtGi~p~~~il~~~~~---------~~ 146 (235)
T cd06193 81 IDFVLHGDEGPASRWAASAQPG----DTLGIAGPGGSFLPP-PDADWYLLAGDETALPAIAAILEELPA---------DA 146 (235)
T ss_pred EEEEeCCCCCchHHHHhhCCCC----CEEEEECCCCCCCCC-CCcceEEEEeccchHHHHHHHHHhCCC---------CC
Confidence 999874 6689998765444 789999999998753 356789999999999999999998642 25
Q ss_pred eEEEEEEECCCCchhhHHHhcccCCCCcccCCCceEEEEEEeCCCCCCCcchhhhhhhhccCCCCCCCCeEeEeCCcchH
Q 005360 452 NVHLICVFKKSADLSMLNIMLPVSDAPTELSKLQLQIEAYVTRDSEQPKTDTLKELQSIWFKSNPSDSPVSGALGCNSWL 531 (700)
Q Consensus 452 ~I~Liw~vR~~~~l~~~d~L~~~~~~~~~l~~~~l~i~iyvTr~~~~~~~~~~~~~~~~~~~p~~~~~~~~~vcGp~~~~ 531 (700)
++++++++|+.+|+..+++ ..+++++..++++.+. ...... .....+.+.+...+.+|||++|+
T Consensus 147 ~~~~~~~~~~~~d~~~l~~------------~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~vyicGp~~mv 210 (235)
T cd06193 147 RGTALIEVPDAADEQPLPA------------PAGVEVTWLHRGGAEA--GELALL--AVRALAPPAGDGYVWIAGEAGAV 210 (235)
T ss_pred eEEEEEEECCHHHccccCC------------CCCcEEEEEeCCCCCc--chhHHH--HHhcccCCCCCeEEEEEccHHHH
Confidence 8999999999866532211 1245666555543321 111111 11112223345688999999997
Q ss_pred HH
Q 005360 532 WL 533 (700)
Q Consensus 532 ~~ 533 (700)
..
T Consensus 211 ~~ 212 (235)
T cd06193 211 RA 212 (235)
T ss_pred HH
Confidence 54
No 68
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.76 E-value=1.9e-17 Score=199.51 Aligned_cols=145 Identities=18% Similarity=0.212 Sum_probs=118.3
Q ss_pred cceEEEEEEEecCCeEEEEEeCCCC-cccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeCCCchHHHHhh
Q 005360 312 NRARLLSARALPCGVVELNFSKSPG-LYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTEGSWTQKLYQQ 390 (700)
Q Consensus 312 ~~~~vvs~~~l~~~~~~l~~~~~~~-~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~~~ 390 (700)
...++++.+.+++++.+++++.+.. ..++||||+.|+++..+ +.|||||++.+. +++++++.||..|..|+.|.++
T Consensus 649 ~~~~I~~~~~lt~dv~~~~l~~p~~~~~~~PGQFv~L~~~~~g--e~rP~SIas~~~-~~g~i~l~Vk~vG~~T~~L~~l 725 (944)
T PRK12779 649 IPQTIVGKVQLAGGIVEFTVRAPMVARSAQAGQFVRVLPWEKG--ELIPLTLADWDA-EKGTIDLVVQGMGTSSLEINRM 725 (944)
T ss_pred eEEEEEEEEEecCCEEEEEEeCCCccccCCCCceEEEEeCCCC--CEEeEEccCCCC-CCCEEEEEEEeeccHHHHHhcC
Confidence 4578899999999999999987643 46899999999986433 569999998764 5678999999999999888776
Q ss_pred hccCCCceEE-EEEccCCCCCCCC--CCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhh
Q 005360 391 ISSSVDRLEV-SVEGPYGPNSAHF--LRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSM 467 (700)
Q Consensus 391 ~~~~~~~~~v-~VeGPyG~~~~~~--~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~ 467 (700)
..+ +.+ .|.||+|++.+.. ...++++|||||+||||++++++++.++ ..+++|+|++|+.+++.+
T Consensus 726 k~G----d~l~~I~GPlG~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~--------g~~V~li~G~Rs~edl~~ 793 (944)
T PRK12779 726 AIG----DAFSGIAGPLGRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRL--------GNHVTLISGFRAKEFLFW 793 (944)
T ss_pred CCc----CEEeeeecCCCCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHHC--------CCCEEEEEEeCCHHHhhh
Confidence 555 678 4999999985421 1236899999999999999999998754 247999999999999887
Q ss_pred HHHh
Q 005360 468 LNIM 471 (700)
Q Consensus 468 ~d~L 471 (700)
.+++
T Consensus 794 ~del 797 (944)
T PRK12779 794 TGDD 797 (944)
T ss_pred HHHH
Confidence 6654
No 69
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.76 E-value=2e-17 Score=201.04 Aligned_cols=192 Identities=15% Similarity=0.156 Sum_probs=141.1
Q ss_pred eEEEEEEEecCCeEEEEEeCCC-CcccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeCCCchHHHHhhhc
Q 005360 314 ARLLSARALPCGVVELNFSKSP-GLYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTEGSWTQKLYQQIS 392 (700)
Q Consensus 314 ~~vvs~~~l~~~~~~l~~~~~~-~~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~~~~~ 392 (700)
+++++.+.+++++..+++..|. ...++||||+.|+++..+ +.+||||++.+. +++++++.+|..|+.|++|++.++
T Consensus 2 ~~I~~~~~l~~~~~~l~l~ap~~a~~~~PGQFV~l~~~~~~--errplSIa~~~~-~~g~i~l~vk~vG~~T~~L~~~lk 78 (1006)
T PRK12775 2 YSIVRREAFSDTTFLWEVEAPDVAASAEPGHFVMLRLYEGA--ERIPLTVADFDR-KKGTITMVVQALGKTTREMMTKFK 78 (1006)
T ss_pred cEEEEEEEecCCEEEEEEecCCcccCCCCCeeEEEEeCCCC--eeEEEEecCcCC-CCCEEEEEEEecCcHHHHHHhcCC
Confidence 4688889999999999998765 346899999999987532 579999998764 567899999999999999975544
Q ss_pred cCCCceEE-EEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhhHHHh
Q 005360 393 SSVDRLEV-SVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSMLNIM 471 (700)
Q Consensus 393 ~~~~~~~v-~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~~d~L 471 (700)
. ++.+ .+.||+|.+.+ ....+++++||||+||||++++++++.+. ..+++++|+.|+.+++.+.|++
T Consensus 79 ~---Gd~l~~v~GPlG~~~~-~~~~~~vllVaGGiGIAPl~s~~r~l~~~--------g~~v~li~g~R~~~~l~~~del 146 (1006)
T PRK12775 79 A---GDTFEDFVGPLGLPQH-IDKAGHVVLVGGGLGVAPVYPQLRAFKEA--------GARTTGIIGFRNKDLVFWEDKF 146 (1006)
T ss_pred C---CCEEeeeecCCCCCCC-CCCCCeEEEEEEhHHHHHHHHHHHHHHhC--------CCcEEEEEeCCChHHcccHHHH
Confidence 3 2566 79999998765 34467999999999999999999998654 2469999999999999998988
Q ss_pred cccCCCCcccCCCceEEEEEEeCCCCCCCcchhhh---hhhhccCCCCCCCCeEeEeCCcchHHHHHH
Q 005360 472 LPVSDAPTELSKLQLQIEAYVTRDSEQPKTDTLKE---LQSIWFKSNPSDSPVSGALGCNSWLWLAVV 536 (700)
Q Consensus 472 ~~~~~~~~~l~~~~l~i~iyvTr~~~~~~~~~~~~---~~~~~~~p~~~~~~~~~vcGp~~~~~~~~~ 536 (700)
..+.. + ++++.++ .+....+.. .+.....+ ....+.+|||++||-...-
T Consensus 147 ~~~~~--------~----~~v~tdd-gs~G~~G~vt~~l~~~l~~~---~~d~vy~CGP~~Mm~av~~ 198 (1006)
T PRK12775 147 GKYCD--------D----LIVCTDD-GSYGKPGFVTAALKEVCEKD---KPDLVVAIGPLPMMNACVE 198 (1006)
T ss_pred HhhcC--------c----EEEEECC-CCCCCCCChHHHHHHHhccC---CCCEEEEECCHHHHHHHHH
Confidence 64321 1 2333333 222222221 11211111 1236899999999866554
No 70
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.75 E-value=5.4e-20 Score=165.40 Aligned_cols=95 Identities=37% Similarity=0.793 Sum_probs=7.1
Q ss_pred ceEEEEEEEecCCeEEEEEeCCCC-cccCCCcEEEEEeCCCC--CceeeeeEeecCCCCCCCeEEEEEEeCCCchHHHHh
Q 005360 313 RARLLSARALPCGVVELNFSKSPG-LYYNPTSILFVNVPSIS--KLQWHPFTVTSNCNMEQDKLSILVKTEGSWTQKLYQ 389 (700)
Q Consensus 313 ~~~vvs~~~l~~~~~~l~~~~~~~-~~~~pGq~v~L~~p~~s--~~q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~~ 389 (700)
++++++++.+++|+++++++++.. ++++||||+||++|..+ .+|+|||||+|.|. ++.+++.||..||||++|++
T Consensus 3 ~~~~~~v~~~~~~~v~i~i~~~~~~~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~--~~~i~l~ik~~g~~T~~L~~ 80 (105)
T PF08022_consen 3 NVRIASVELLPDDVVEITIPKPSSPFKWKPGQYVFLSFPSISKWFWQWHPFTIASSPE--DNSITLIIKARGGWTKRLYE 80 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEEEEEEcCCCEEEEEEECCCCCCCCCCceEEEEEEcCcCcCcccccccEeeccCC--CCEEEEEEEeCCCchHHHHH
Confidence 346778899999999999999876 89999999999999998 56999999999984 78999999999999999999
Q ss_pred hhcc----CCCceEEEEEccCCCC
Q 005360 390 QISS----SVDRLEVSVEGPYGPN 409 (700)
Q Consensus 390 ~~~~----~~~~~~v~VeGPyG~~ 409 (700)
.+.. .....++.||||||.+
T Consensus 81 ~~~~~~~~~~~~~~v~idGPYG~~ 104 (105)
T PF08022_consen 81 HLSESPSKQGNRLRVFIDGPYGAP 104 (105)
T ss_dssp ----------------TTSTTSHH
T ss_pred HHhhhcccCCCceEEEEECCCCCC
Confidence 8754 1335789999999974
No 71
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=99.71 E-value=6e-17 Score=149.56 Aligned_cols=119 Identities=29% Similarity=0.532 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHhcCCcccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--HHHHHhhhcccch
Q 005360 160 LGYIGNTCWAFLFFPVTRGSSILPLVGLTSESSIKYHIWLGHLSNALFALHAVGFLIYWAMTNQM--AEVLEWSETYVSN 237 (700)
Q Consensus 160 ~G~ia~~~l~ll~l~~~Rnn~l~~ltG~~~e~~~~~Hrwlgr~~~~~~~iH~i~~~~~~~~~~~~--~~~~~w~~~~~~~ 237 (700)
+|.+|..++++++++++|||++...+|+++|+.+.+|||+|+++++++++|++.+...+...+.. .........+..+
T Consensus 1 ~G~~a~~~l~~~~~l~~R~~~l~~~~~~~~~~~~~~Hr~lg~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T PF01794_consen 1 LGILAFALLPLVFLLGLRNSPLARLTGISFDRLLRFHRWLGRLAFFLALLHGVLYLINWLRFGGWDWQEWFNAWLTGPYN 80 (125)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhHH
Confidence 48999999999999999999999999999999999999999999999999999999877654321 1111112234556
Q ss_pred hHHHHHHHHHHHHHHhcchhHh-hhchhHHHHHHHHHHHHHH
Q 005360 238 VAGVIAIAIATVIWATSLPRFR-RKMFELFFYTHHLYILYII 278 (700)
Q Consensus 238 ~~G~ia~~~l~~l~~~Sl~~iR-r~~YE~F~~~H~l~~~~lv 278 (700)
.+|.++++++++|.++|.+++| |+.||.|+++|++.+++++
T Consensus 81 ~~G~~a~~~l~~l~~tS~~~~R~r~~ye~f~~~H~~~~~~~~ 122 (125)
T PF01794_consen 81 LTGIIALLLLLILAVTSFPWIRRRRNYEIFYYLHILFYIAFL 122 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999 8899999999999865444
No 72
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=99.63 E-value=1e-15 Score=168.73 Aligned_cols=179 Identities=13% Similarity=0.109 Sum_probs=122.6
Q ss_pred ccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEe------------CCCchHHHHhhhccCCCceEEEEEcc
Q 005360 338 YYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKT------------EGSWTQKLYQQISSSVDRLEVSVEGP 405 (700)
Q Consensus 338 ~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~------------~Gg~T~~L~~~~~~~~~~~~v~VeGP 405 (700)
+...||++.+. | ..+.|||||+|+|..+++.+++.++. .|..|+.|.++.. ++.+.+.+.||
T Consensus 146 ~~~~~~~l~~~-p---~l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~i~~p 219 (384)
T cd06206 146 ALPLATFLAML-P---PMRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRP--GDSIHVSVRPS 219 (384)
T ss_pred CCCHHHHHHhC-c---ccCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCC--CCeEEEEEecC
Confidence 34568887776 4 24779999999986445666666654 5779999976443 35556667899
Q ss_pred CCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCC-CchhhHHHhcccCCCCcccCCC
Q 005360 406 YGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKS-ADLSMLNIMLPVSDAPTELSKL 484 (700)
Q Consensus 406 yG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~-~~l~~~d~L~~~~~~~~~l~~~ 484 (700)
+|.+..+....++++|||||+||||+++++++...... + .....++.|+|++|+. +|+.+.||+.++.. ..
T Consensus 220 ~g~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~-~-~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~------~~ 291 (384)
T cd06206 220 HSAFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLA-Q-GRKLAPALLFFGCRHPDHDDLYRDELEEWEA------AG 291 (384)
T ss_pred CCccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHh-c-CCCcCCEEEEEeCCCCCcccchHHHHHHHHH------CC
Confidence 99986544456789999999999999999998765321 0 1124589999999999 79999999987652 35
Q ss_pred ceEEEEEEeCCCCCCC--cchhh--hhhhhccCCCCCCCCeEeEeCCcchHH
Q 005360 485 QLQIEAYVTRDSEQPK--TDTLK--ELQSIWFKSNPSDSPVSGALGCNSWLW 532 (700)
Q Consensus 485 ~l~i~iyvTr~~~~~~--~~~~~--~~~~~~~~p~~~~~~~~~vcGp~~~~~ 532 (700)
++++...++|++++.. .++.. ..+.+.. ...+...+.+|||++|+.
T Consensus 292 ~~~l~~a~Sr~~~~~~~yVq~~i~~~~~~~~~--~~~~~~~vyiCGp~~M~~ 341 (384)
T cd06206 292 VVSVRRAYSRPPGGGCRYVQDRLWAEREEVWE--LWEQGARVYVCGDGRMAP 341 (384)
T ss_pred CeEEEEEecccCCCCCEechhhHHhhHHHHHH--HHHCCcEEEEECCCchHH
Confidence 6788888888653211 11111 0011111 012457789999999763
No 73
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=99.61 E-value=2.4e-15 Score=164.24 Aligned_cols=176 Identities=14% Similarity=0.110 Sum_probs=124.0
Q ss_pred CcccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEe----------CCCchHHHHhhhccCCCceEEEEEcc
Q 005360 336 GLYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKT----------EGSWTQKLYQQISSSVDRLEVSVEGP 405 (700)
Q Consensus 336 ~~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~----------~Gg~T~~L~~~~~~~~~~~~v~VeGP 405 (700)
..++.|||++.+..| .+.|+|||+|+|...++.+++.|+. .|..|..|.+..+. +.++.+.+|
T Consensus 129 ~~~~~~gq~l~l~~~----~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~G~~S~~L~~~~~~---Gd~v~v~~~ 201 (360)
T cd06199 129 PARLTAEELLDLLRP----LQPRLYSIASSPKAVPDEVHLTVAVVRYESHGRERKGVASTFLADRLKE---GDTVPVFVQ 201 (360)
T ss_pred CCCCCHHHHHHhCcC----CCCcceeeccCcccCCCeEEEEEEEeeecCCCCccceehhHHHHhcCCC---CCEEEEEEe
Confidence 357889999988754 3679999999996446789998884 48899999987643 367888875
Q ss_pred CC-CCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCC-CchhhHHHhcccCCCCcccCC
Q 005360 406 YG-PNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKS-ADLSMLNIMLPVSDAPTELSK 483 (700)
Q Consensus 406 yG-~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~-~~l~~~d~L~~~~~~~~~l~~ 483 (700)
.| .+..+.....+++||||||||||++|++++...... ..++.|+|++|++ +|+.+.+|+.++.. +.
T Consensus 202 ~~~~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~------~~~~~L~~G~R~~~~D~~y~~el~~~~~-----~~ 270 (360)
T cd06199 202 PNPHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREATGA------KGKNWLFFGERHFATDFLYQDELQQWLK-----DG 270 (360)
T ss_pred cCCCcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhccC------CCcEEEEEcCCCCccchhHHHHHHHHHH-----cC
Confidence 54 554333345789999999999999999998765422 4679999999997 79999999987653 34
Q ss_pred CceEEEEEEeCCCCCC-Ccchhhh--hhhhccCCCCCCCCeEeEeCCc-chH
Q 005360 484 LQLQIEAYVTRDSEQP-KTDTLKE--LQSIWFKSNPSDSPVSGALGCN-SWL 531 (700)
Q Consensus 484 ~~l~i~iyvTr~~~~~-~~~~~~~--~~~~~~~p~~~~~~~~~vcGp~-~~~ 531 (700)
.+++++..++|+.++. ..++... ...+.. ..++...+.+|||+ .|.
T Consensus 271 ~~~~~~~a~Sr~~~~~~yVq~~l~~~~~~~~~--~~~~~~~vYvCG~~~~M~ 320 (360)
T cd06199 271 VLTRLDTAFSRDQAEKVYVQDRMREQGAELWA--WLEEGAHFYVCGDAKRMA 320 (360)
T ss_pred CCeEEEEEEccCCCCCccHHHHHHHhHHHHHH--HHhCCCEEEEECCCcccc
Confidence 5678888889875321 1111110 011110 01234678899999 664
No 74
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=99.59 E-value=5.2e-15 Score=163.02 Aligned_cols=167 Identities=14% Similarity=0.086 Sum_probs=118.0
Q ss_pred CceeeeeEeecCCCCCCCeEEEEEEeC-----------CCchHHHHhhhccCCCceEEEEEccCCCCCCCCCCCCeEEEE
Q 005360 354 KLQWHPFTVTSNCNMEQDKLSILVKTE-----------GSWTQKLYQQISSSVDRLEVSVEGPYGPNSAHFLRHESLVMV 422 (700)
Q Consensus 354 ~~q~HPFTIas~p~~~~~~l~l~IK~~-----------Gg~T~~L~~~~~~~~~~~~v~VeGPyG~~~~~~~~~~~vvlI 422 (700)
..+.|||||+|+|..+++.++|.||.. |-.|+.|.++..+ .++.+.||+|.+..+.....+++||
T Consensus 161 ~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~G----d~v~v~~p~g~F~lp~~~~~plImI 236 (382)
T cd06207 161 LIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVG----QRVTVFIKKSSFKLPKDPKKPIIMV 236 (382)
T ss_pred CCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCCC----CEEEEEEECCcccCCCCCCCCEEEE
Confidence 568899999999864567899999853 8899999875544 6799999999875433335789999
Q ss_pred EcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCC-CchhhHHHhcccCCCCcccCCCceEEEEEEeCCCCCC-C
Q 005360 423 SGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKS-ADLSMLNIMLPVSDAPTELSKLQLQIEAYVTRDSEQP-K 500 (700)
Q Consensus 423 AGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~-~~l~~~d~L~~~~~~~~~l~~~~l~i~iyvTr~~~~~-~ 500 (700)
|||+||||+++++++.....+ .....+++.|+|++|+. +|..+.||+.++.. +....+++...+|++++. .
T Consensus 237 a~GtGIAP~rs~l~~~~~~~~--~~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~-----~~~~~~~~~a~Srd~~~~~y 309 (382)
T cd06207 237 GPGTGLAPFRAFLQERAALLA--QGPEIGPVLLYFGCRHEDKDYLYKEELEEYEK-----SGVLTTLGTAFSRDQPKKVY 309 (382)
T ss_pred cCCccHHHHHHHHHHHHHHhh--cCccCCCEEEEECCCCCCccccHHHHHHHHHh-----CCCCceEEEEecCCCCCceE
Confidence 999999999999998764321 11235689999999998 89999999987653 345678888888865321 1
Q ss_pred cchhhhh--hhhccCCCCCCCCeEeEeCCcc-hHH
Q 005360 501 TDTLKEL--QSIWFKSNPSDSPVSGALGCNS-WLW 532 (700)
Q Consensus 501 ~~~~~~~--~~~~~~p~~~~~~~~~vcGp~~-~~~ 532 (700)
.++.... +.+... ..+++..+.+|||++ |+.
T Consensus 310 Vq~~l~~~~~~~~~~-l~~~~~~vYvCG~~~~M~~ 343 (382)
T cd06207 310 VQDLIRENSDLVYQL-LEEGAGVIYVCGSTWKMPP 343 (382)
T ss_pred hHHHHHHCHHHHHHH-HhcCCCEEEEECCcccccH
Confidence 1111100 011100 012335789999998 864
No 75
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=99.56 E-value=6.5e-15 Score=170.47 Aligned_cols=175 Identities=12% Similarity=0.100 Sum_probs=121.9
Q ss_pred cccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEe----------CCCchHHHHhhhccCCCceEEEEEccC
Q 005360 337 LYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKT----------EGSWTQKLYQQISSSVDRLEVSVEGPY 406 (700)
Q Consensus 337 ~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~----------~Gg~T~~L~~~~~~~~~~~~v~VeGPy 406 (700)
.++.|||++.+..| .+.|||||+|+|...++++++.|+. .|..|..|.+.++. +.++.+.||.
T Consensus 367 ~~~~~gq~v~ll~~----~~~R~YSIaSsp~~~~~~l~ltV~~v~~~~~~~~~~G~~S~~L~~~l~~---Gd~v~v~~~~ 439 (597)
T TIGR01931 367 ADLDAEQLISLLRP----LTPRLYSISSSQSEVGDEVHLTVGVVRYQAHGRARLGGASGFLAERLKE---GDTVPVYIEP 439 (597)
T ss_pred CCCCHHHHHHhCcc----cCCceeeeccCcccCCCEEEEEEEEEEecCCCCccccchhHHHHhhCCC---CCEEEEEEee
Confidence 57899999988865 3779999999986556789999985 49999999985544 3568888765
Q ss_pred C-CCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECC-CCchhhHHHhcccCCCCcccCCC
Q 005360 407 G-PNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKK-SADLSMLNIMLPVSDAPTELSKL 484 (700)
Q Consensus 407 G-~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~-~~~l~~~d~L~~~~~~~~~l~~~ 484 (700)
| .+..+.....+++||||||||||+++++++...+.. ..++.|+|++|+ .+|+.+.+|+..+.. +..
T Consensus 440 ~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~------~g~~~LffG~R~~~~D~ly~~El~~~~~-----~~~ 508 (597)
T TIGR01931 440 NDNFRLPEDPDTPIIMIGPGTGVAPFRAFMQERAEDGA------KGKNWLFFGNPHFTTDFLYQVEWQNYLK-----KGV 508 (597)
T ss_pred CCcccCCCCCCCCEEEEcCCcCchhHHHHHHHHHHccC------CCCEEEEECCCCCCcchhHHHHHHHHHH-----cCC
Confidence 4 554333345689999999999999999998876532 467999999998 779989999976653 233
Q ss_pred ceEEEEEEeCCCCCC-Ccchhhhh--hhhccCCCCCCCCeEeEeC-CcchH
Q 005360 485 QLQIEAYVTRDSEQP-KTDTLKEL--QSIWFKSNPSDSPVSGALG-CNSWL 531 (700)
Q Consensus 485 ~l~i~iyvTr~~~~~-~~~~~~~~--~~~~~~p~~~~~~~~~vcG-p~~~~ 531 (700)
..+++...+|+.++. ..++.... ..++. ...+...+.+|| |+.|+
T Consensus 509 l~~l~~afSRd~~~k~yVqd~l~e~~~~~~~--~l~~~a~vYvCG~~~~M~ 557 (597)
T TIGR01931 509 LTKMDLAFSRDQAEKIYVQHRIREQGAELWQ--WLQEGAHIYVCGDAKKMA 557 (597)
T ss_pred CceeEEEEecCCCCCccHHHHHHHhHHHHHH--HHhCCcEEEEECCCcccc
Confidence 345677778853211 11111110 01100 011346789999 77775
No 76
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=99.54 E-value=7.4e-14 Score=154.56 Aligned_cols=172 Identities=13% Similarity=0.106 Sum_probs=115.3
Q ss_pred CceeeeeEeecCCCCCCCeEEEEEEeC-----CCchHHHHhhhcc-CCCceEEEEEc-cCCCCCCCCC-CCCeEEEEEcC
Q 005360 354 KLQWHPFTVTSNCNMEQDKLSILVKTE-----GSWTQKLYQQISS-SVDRLEVSVEG-PYGPNSAHFL-RHESLVMVSGG 425 (700)
Q Consensus 354 ~~q~HPFTIas~p~~~~~~l~l~IK~~-----Gg~T~~L~~~~~~-~~~~~~v~VeG-PyG~~~~~~~-~~~~vvlIAGG 425 (700)
..+.|+|||+|+|...++.+++.|+.. |-.|+.|.++... ...+.++.+.| |.|.+..+.. ...+++|||||
T Consensus 171 ~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~~G~~S~~L~~l~~~~~~~G~~v~i~~~~~g~F~lp~~~~~~piImIa~G 250 (398)
T cd06203 171 RLQPRPYSIASSPLEGPGKLRFIFSVVEFPAKGLCTSWLESLCLSASSHGVKVPFYLRSSSRFRLPPDDLRRPIIMVGPG 250 (398)
T ss_pred cCCCcceeecCCcccCCCeEEEEEEEEEecCCChhhHHHHHhhhhhcCCCCEEEEEEecCCCcCCCCcCCCCCEEEEcCC
Confidence 457899999999864467899988872 7799999998730 00126688888 6676654333 35789999999
Q ss_pred CChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCC-CchhhHHHhcccCCCCcccCCCceEEEEEEeCCCCCCCcchh
Q 005360 426 SGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKS-ADLSMLNIMLPVSDAPTELSKLQLQIEAYVTRDSEQPKTDTL 504 (700)
Q Consensus 426 ~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~-~~l~~~d~L~~~~~~~~~l~~~~l~i~iyvTr~~~~~~~~~~ 504 (700)
|||||+++++++.......+......++.|+|++|++ +|..+.+|+.++.. +....++...++|+++++. ..+
T Consensus 251 tGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~-----~~~~~~~~~a~SRd~~~~g-~k~ 324 (398)
T cd06203 251 TGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLE-----EGILTRLIVAFSRDENDGS-TPK 324 (398)
T ss_pred cChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHH-----cCCCceEEEEECCCCCCCC-Cce
Confidence 9999999999987653210111235689999999999 79999999987653 3445568888898764321 111
Q ss_pred hhhhhhccC-C----C-CCCCCeEeEeCCcchH
Q 005360 505 KELQSIWFK-S----N-PSDSPVSGALGCNSWL 531 (700)
Q Consensus 505 ~~~~~~~~~-p----~-~~~~~~~~vcGp~~~~ 531 (700)
.+.+.+... + . ...+..+.+|||+.+|
T Consensus 325 yVqd~l~~~~~~~~~~l~~~~~~iYvCG~~~~M 357 (398)
T cd06203 325 YVQDKLEERGKKLVDLLLNSNAKIYVCGDAKGM 357 (398)
T ss_pred ecchHHHhCHHHHHHHHhcCCcEEEEECCcchh
Confidence 111111110 0 0 1235778899997554
No 77
>PRK06214 sulfite reductase; Provisional
Probab=99.52 E-value=1e-13 Score=156.96 Aligned_cols=163 Identities=16% Similarity=0.185 Sum_probs=113.1
Q ss_pred CceeeeeEeecCCCCCCCeEEEEEEe----------CCCchHHHHhhhccCCCceEEEEEccCCCCCCCCCCCCeEEEEE
Q 005360 354 KLQWHPFTVTSNCNMEQDKLSILVKT----------EGSWTQKLYQQISSSVDRLEVSVEGPYGPNSAHFLRHESLVMVS 423 (700)
Q Consensus 354 ~~q~HPFTIas~p~~~~~~l~l~IK~----------~Gg~T~~L~~~~~~~~~~~~v~VeGPyG~~~~~~~~~~~vvlIA 423 (700)
..+.|||||+|+|..+++.++|.||. .|..|.+|.+.++. ++.+.+.+.+|+| +..+.....++||||
T Consensus 313 ~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~~~~~~~G~~S~~L~~~l~~-Gd~V~v~i~~~~g-F~lp~~~~~PiImIg 390 (530)
T PRK06214 313 PLQPRLYSISSSPKATPGRVSLTVDAVRYEIGSRLRLGVASTFLGERLAP-GTRVRVYVQKAHG-FALPADPNTPIIMVG 390 (530)
T ss_pred CCCcEEEEeccCCcCCCCEEEEEEEEEeeccCCccccchhhHHHHhcCCC-CCEEEEEecCCCC-CccCCCCCCCEEEEc
Confidence 45889999999986556889999985 37889999876554 4556666677877 543333456899999
Q ss_pred cCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECC-CCchhhHHHhcccCCCCcccCCCceEEEEEEeCCCCCC-Cc
Q 005360 424 GGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKK-SADLSMLNIMLPVSDAPTELSKLQLQIEAYVTRDSEQP-KT 501 (700)
Q Consensus 424 GG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~-~~~l~~~d~L~~~~~~~~~l~~~~l~i~iyvTr~~~~~-~~ 501 (700)
||+||||+++++++...... ..++.|+|++|+ .+|..+.||+.++.. .+...+++...+|+.++. ..
T Consensus 391 ~GTGIAPfrsfLq~r~~~~~------~g~~~LffG~R~~~~D~ly~dEL~~l~~-----~g~l~~l~~afSRd~~~k~YV 459 (530)
T PRK06214 391 PGTGIAPFRAFLHERAATKA------PGRNWLFFGHQRSATDFFYEDELNGLKA-----AGVLTRLSLAWSRDGEEKTYV 459 (530)
T ss_pred CCeeHHHHHHHHHHHHHhcC------CCCeEEEEEecCChhhhHHHHHHHHHHH-----hCCceEEEEEEecCCCCCCch
Confidence 99999999999998765422 457899999965 678888999986653 344456777888875322 12
Q ss_pred chhh--hhhhhccCCCCCCCCeEeEeCCcchH
Q 005360 502 DTLK--ELQSIWFKSNPSDSPVSGALGCNSWL 531 (700)
Q Consensus 502 ~~~~--~~~~~~~~p~~~~~~~~~vcGp~~~~ 531 (700)
++.. ....++. ...++..+.||||..+|
T Consensus 460 Q~~L~e~~~~l~~--~l~~~a~iYVCGp~~~M 489 (530)
T PRK06214 460 QDRMRENGAELWK--WLEEGAHFYVCGDAKRM 489 (530)
T ss_pred hhHHHHHHHHHHh--hhcCCcEEEEeCChHHH
Confidence 2211 1111111 12345678899999876
No 78
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.51 E-value=6.7e-14 Score=141.00 Aligned_cols=186 Identities=11% Similarity=0.144 Sum_probs=142.3
Q ss_pred EEEeCCCCcccCCCcEEEEEeCCC----C----------Cc---------------eeeeeEeecCCCCCCCeEEEEEEe
Q 005360 329 LNFSKSPGLYYNPTSILFVNVPSI----S----------KL---------------QWHPFTVTSNCNMEQDKLSILVKT 379 (700)
Q Consensus 329 l~~~~~~~~~~~pGq~v~L~~p~~----s----------~~---------------q~HPFTIas~p~~~~~~l~l~IK~ 379 (700)
+.++..+..+++||.|+.+..|.- + .| ..+.||.+|-|. +.+.+.|-||.
T Consensus 154 laip~g~~vpFraGGyiQie~pph~v~y~Dfdi~~eY~~DWdkf~lf~~vs~v~e~~~rAYSmAsYPe-E~giI~~NvRI 232 (410)
T COG2871 154 LAIPEGEEVPFRAGGYIQIEAPPHTVNYKDFDIPPEYHEDWDKFNLFRYVSKVDEPIIRAYSMASYPE-EKGIIKLNVRI 232 (410)
T ss_pred eeCCCCCccccCCCceEEEecCCccccccccCCChhHhcchhhhchheeeccccHHHHHHhhhhcChh-hcCeEEEEEEe
Confidence 334444567899999999998742 1 01 127888998886 67888888886
Q ss_pred -----------CCCchHHHHhhhccCCCceEEEEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCC
Q 005360 380 -----------EGSWTQKLYQQISSSVDRLEVSVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDY 448 (700)
Q Consensus 380 -----------~Gg~T~~L~~~~~~~~~~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~ 448 (700)
-|-.+++++++.++ ++|.|.||||.+.. -+....+|||.||.|.+|+.|.+-|++.+..
T Consensus 233 AtPPp~~~~~PpG~mSSyi~sLKpG----DKvtisGPfGEfFa-KdtdaemvFigGGAGmapmRSHIfDqL~rlh----- 302 (410)
T COG2871 233 ATPPPRNPDAPPGQMSSYIWSLKPG----DKVTISGPFGEFFA-KDTDAEMVFIGGGAGMAPMRSHIFDQLKRLH----- 302 (410)
T ss_pred ccCCCCCCCCCccceeeeEEeecCC----CeEEEeccchhhhh-ccCCCceEEEecCcCcCchHHHHHHHHHhhc-----
Confidence 36688888888776 88999999999865 2455679999999999999999999998754
Q ss_pred CCCeEEEEEEECCCCchhhHHHhcccCCCCcccCCCceEEEEEEeCCC--CCCCcchhh-----hhhhhccCCCCCCCCe
Q 005360 449 KIPNVHLICVFKKSADLSMLNIMLPVSDAPTELSKLQLQIEAYVTRDS--EQPKTDTLK-----ELQSIWFKSNPSDSPV 521 (700)
Q Consensus 449 ~~~~I~Liw~vR~~~~l~~~d~L~~~~~~~~~l~~~~l~i~iyvTr~~--~~~~~~~~~-----~~~~~~~~p~~~~~~~ 521 (700)
.++++.+-|+.|+..+..+.++.+++.. +.+|+.-|+.++++. +.|+.-.+. ....+...|+|+|+-+
T Consensus 303 SkRkis~WYGARS~rE~fY~Ed~d~L~a-----e~pNF~wH~aLSdplpEDnW~g~TgFihnv~~en~Lk~h~aPEDcey 377 (410)
T COG2871 303 SKRKISFWYGARSLREMFYQEDFDQLQA-----ENPNFHWHLALSDPLPEDNWDGYTGFIHNVLYENYLKDHEAPEDCEY 377 (410)
T ss_pred ccceeeeeeccchHHHhHHHHHHHHHHh-----hCCCcEEEEEecCCCCcCCcccchhHHHHHHHhhhhhcCCCchheeE
Confidence 4689999999999999999888887754 778999999999874 355543332 2334556688887765
Q ss_pred EeEeCCcchH
Q 005360 522 SGALGCNSWL 531 (700)
Q Consensus 522 ~~vcGp~~~~ 531 (700)
+ +||||-|-
T Consensus 378 Y-mCGPp~mN 386 (410)
T COG2871 378 Y-MCGPPLMN 386 (410)
T ss_pred E-eeCcchhh
Confidence 5 69999753
No 79
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=99.48 E-value=4.1e-13 Score=149.47 Aligned_cols=170 Identities=13% Similarity=0.133 Sum_probs=116.5
Q ss_pred CceeeeeEeecCCCCCCCeEEEEEEe-----------CCCchHHHHhhhccC-----------------CCceEEEEEcc
Q 005360 354 KLQWHPFTVTSNCNMEQDKLSILVKT-----------EGSWTQKLYQQISSS-----------------VDRLEVSVEGP 405 (700)
Q Consensus 354 ~~q~HPFTIas~p~~~~~~l~l~IK~-----------~Gg~T~~L~~~~~~~-----------------~~~~~v~VeGP 405 (700)
..+.|+|||+|+|..+++.+++.|+. .|-.|..|.+..++. ..++.+.+.+|
T Consensus 175 ~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~v~~~ 254 (416)
T cd06204 175 RLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPTPYYLSGPRKKGGGSKVPVFVR 254 (416)
T ss_pred cCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhcccccccccccccccccCCCCeEEEEEe
Confidence 46889999999996567789998875 278899999877410 01356777788
Q ss_pred CCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCC-CchhhHHHhcccCCCCcccCCC
Q 005360 406 YGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKS-ADLSMLNIMLPVSDAPTELSKL 484 (700)
Q Consensus 406 yG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~-~~l~~~d~L~~~~~~~~~l~~~ 484 (700)
.|.+..+.....+++|||||+||||+++++++.....+ + .....++.|+|++|++ +|+.+.+|+.++.. ...
T Consensus 255 ~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~-~-~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~-----~~~ 327 (416)
T cd06204 255 RSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKE-S-GKKVGPTLLFFGCRHPDEDFIYKDELEEYAK-----LGG 327 (416)
T ss_pred cCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhh-c-cCccCCEEEEEcCCCCCcccchHHHHHHHHH-----cCC
Confidence 88875433445789999999999999999998654321 1 1124689999999998 78989999987653 345
Q ss_pred ceEEEEEEeCCCCCC-Ccchhhh--hhhhccCCCCCCCCeEeEeCCcc-hHH
Q 005360 485 QLQIEAYVTRDSEQP-KTDTLKE--LQSIWFKSNPSDSPVSGALGCNS-WLW 532 (700)
Q Consensus 485 ~l~i~iyvTr~~~~~-~~~~~~~--~~~~~~~p~~~~~~~~~vcGp~~-~~~ 532 (700)
+++++..++|++++. ..++... ...+.. ...+...+.+|||++ |+-
T Consensus 328 ~~~l~~a~Sr~~~~k~yVq~~i~~~~~~~~~--~l~~~~~vYvCGp~~~M~~ 377 (416)
T cd06204 328 LLELVTAFSREQPKKVYVQHRLAEHAEQVWE--LINEGAYIYVCGDAKNMAR 377 (416)
T ss_pred ceEEEEEECcCCCCCcchHHHHHHhHHHHHH--HHHcCCEEEEECCcccchH
Confidence 678888888865311 1111111 011110 011346789999998 653
No 80
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=99.44 E-value=7.8e-13 Score=146.74 Aligned_cols=168 Identities=17% Similarity=0.149 Sum_probs=108.7
Q ss_pred CceeeeeEeecCCCCCCCeEEEEEEe-------------CCCchHHHHhhhccCCCceEEEEEccCC-CCCCCCCCCCeE
Q 005360 354 KLQWHPFTVTSNCNMEQDKLSILVKT-------------EGSWTQKLYQQISSSVDRLEVSVEGPYG-PNSAHFLRHESL 419 (700)
Q Consensus 354 ~~q~HPFTIas~p~~~~~~l~l~IK~-------------~Gg~T~~L~~~~~~~~~~~~v~VeGPyG-~~~~~~~~~~~v 419 (700)
..+.|+|||+|+|...++.+++.|+. .|-.|+.|.++..+ +++.+.+|-| .+..+.....++
T Consensus 174 ~l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~G----d~v~v~~~~~~~F~lp~~~~~pi 249 (406)
T cd06202 174 LLQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPG----DTVPCFVRSAPSFHLPEDPSVPV 249 (406)
T ss_pred ccCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCCC----CEEEEEEeeCCccCCCCCCCCCE
Confidence 35789999999986445666666654 37799999765544 4566655433 343323345789
Q ss_pred EEEEcCCChhhHHHHHHHHHHhcC--CCCCCCCCeEEEEEEECCC-CchhhHHHhcccCCCCcccCCCceEEEEEEeCCC
Q 005360 420 VMVSGGSGISPFISIVRELIFQSN--NNPDYKIPNVHLICVFKKS-ADLSMLNIMLPVSDAPTELSKLQLQIEAYVTRDS 496 (700)
Q Consensus 420 vlIAGG~GITp~lsil~~l~~~~~--~~~~~~~~~I~Liw~vR~~-~~l~~~d~L~~~~~~~~~l~~~~l~i~iyvTr~~ 496 (700)
+|||||+||||+++++++.....+ ........++.|++++|+. +|..+.||+.++.. +....+++..++|++
T Consensus 250 ImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~-----~~~~~~~~~a~SR~~ 324 (406)
T cd06202 250 IMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKN-----KGVLTEVYTALSREP 324 (406)
T ss_pred EEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHH-----cCCCceEEEEEcCCC
Confidence 999999999999999998653210 0111235689999999999 78888999986653 344567888889875
Q ss_pred CCCCcchhhhhh----hhccCCCCCCCCeEeEeCCcchH
Q 005360 497 EQPKTDTLKELQ----SIWFKSNPSDSPVSGALGCNSWL 531 (700)
Q Consensus 497 ~~~~~~~~~~~~----~~~~~p~~~~~~~~~vcGp~~~~ 531 (700)
+....-.+.... .++..- ...+..+.+|||++|+
T Consensus 325 ~~~k~yVq~~l~~~~~~v~~~l-~~~~~~iYvCG~~~M~ 362 (406)
T cd06202 325 GKPKTYVQDLLKEQAESVYDAL-VREGGHIYVCGDVTMA 362 (406)
T ss_pred CCCCeehhhHHHHhHHHHHHHH-HhCCCEEEEeCCCchH
Confidence 322211111111 111000 1245678899999876
No 81
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=99.42 E-value=4e-13 Score=155.07 Aligned_cols=175 Identities=14% Similarity=0.117 Sum_probs=121.3
Q ss_pred cccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEe----------CCCchHHHHhhhccCCCceEEEEEccC
Q 005360 337 LYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKT----------EGSWTQKLYQQISSSVDRLEVSVEGPY 406 (700)
Q Consensus 337 ~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~----------~Gg~T~~L~~~~~~~~~~~~v~VeGPy 406 (700)
.++.|||++.+..| .+.|+|||+|+|...++++++.|+. .|..|..|.+.++. +.++.+.||.
T Consensus 370 ~~~~~~q~l~ll~~----l~pR~YSIaSsp~~~~~~v~ltv~~v~~~~~g~~~~G~~S~~L~~~l~~---Gd~v~v~~~~ 442 (600)
T PRK10953 370 AQLDAEQLIGLLRP----LTPRLYSIASSQAEVENEVHITVGVVRYDIEGRARAGGASSFLADRLEE---EGEVRVFIEH 442 (600)
T ss_pred CCCCHHHHHHhCCC----CCCeeeecccCCCCCCCeEEEEEEEEEeecCCCCcCceEhhhhhhcCCC---CCEEEEEecc
Confidence 36889999887765 3679999999986556677777643 56788889875543 3678888887
Q ss_pred C-CCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECC-CCchhhHHHhcccCCCCcccCCC
Q 005360 407 G-PNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKK-SADLSMLNIMLPVSDAPTELSKL 484 (700)
Q Consensus 407 G-~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~-~~~l~~~d~L~~~~~~~~~l~~~ 484 (700)
| .+..+.....+++|||+||||||+++++++...... ..++.|+|++|+ .+|..+.+|+.++.. +..
T Consensus 443 ~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~------~~~~~LffG~R~~~~D~lY~~El~~~~~-----~g~ 511 (600)
T PRK10953 443 NDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGA------PGKNWLFFGNPHFTEDFLYQVEWQRYVK-----EGL 511 (600)
T ss_pred CCcccCCCCCCCCEEEEecCcCcHHHHHHHHHHHHcCC------CCCeEEEeeccCCccchhHHHHHHHHHH-----cCC
Confidence 6 454333445789999999999999999998765432 468999999998 788999999987653 222
Q ss_pred ceEEEEEEeCCCCC-CCcchhhhh--hhhccCCCCCCCCeEeEeCCcchH
Q 005360 485 QLQIEAYVTRDSEQ-PKTDTLKEL--QSIWFKSNPSDSPVSGALGCNSWL 531 (700)
Q Consensus 485 ~l~i~iyvTr~~~~-~~~~~~~~~--~~~~~~p~~~~~~~~~vcGp~~~~ 531 (700)
..+++...+|+.++ ...++.... +.++. ...+.....||||...|
T Consensus 512 l~~l~~afSRd~~~k~YVQ~~l~e~~~~l~~--~l~~ga~~YVCG~~~~M 559 (600)
T PRK10953 512 LTRIDLAWSRDQKEKIYVQDKLREQGAELWR--WINDGAHIYVCGDANRM 559 (600)
T ss_pred cceEEEEECCCCCCCCcHHHHHHHHHHHHHH--HHHCCcEEEEECCCccc
Confidence 33577788887532 222221111 11111 11345778899998654
No 82
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=99.28 E-value=1.8e-11 Score=108.48 Aligned_cols=91 Identities=25% Similarity=0.364 Sum_probs=76.1
Q ss_pred eEEEEEEEecCCeEEEEEeCCC---CcccCCCcEEEEEeCCCCCceeeeeEeecCCCCCCCeEEEEEEeC--CCchHHHH
Q 005360 314 ARLLSARALPCGVVELNFSKSP---GLYYNPTSILFVNVPSISKLQWHPFTVTSNCNMEQDKLSILVKTE--GSWTQKLY 388 (700)
Q Consensus 314 ~~vvs~~~l~~~~~~l~~~~~~---~~~~~pGq~v~L~~p~~s~~q~HPFTIas~p~~~~~~l~l~IK~~--Gg~T~~L~ 388 (700)
+++++++.+++++..++++.++ ...+.||||+.|+++..+...+||||+++.+. +++.++|.||.. |.+|+.|.
T Consensus 2 ~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~-~~~~~~~~ik~~~~G~~S~~L~ 80 (99)
T PF00970_consen 2 AKVVEIEELSPDVKIFRFKLPDPDQKLDFKPGQFVSVRVPINGKQVSRPYSPASSPD-DKGYLEFAIKRYPNGRVSRYLH 80 (99)
T ss_dssp EEEEEEEEESSSEEEEEEEESSTTTT-SSTTT-EEEEEEEETTEEEEEEEEBCSSTT-SSSEEEEEEEECTTSHHHHHHH
T ss_pred EEEEEEEEeCCCeEEEEEEECCCCcccccCcceEEEEEEccCCcceecceeEeeecC-CCCcEEEEEEeccCCHHHHHHH
Confidence 5789999999999998887653 25699999999999955567899999999985 677999999996 88999997
Q ss_pred hhhccCCCceEEEEEccCCCC
Q 005360 389 QQISSSVDRLEVSVEGPYGPN 409 (700)
Q Consensus 389 ~~~~~~~~~~~v~VeGPyG~~ 409 (700)
++..+ +++.++||+|.+
T Consensus 81 ~l~~G----d~v~i~gP~G~f 97 (99)
T PF00970_consen 81 QLKPG----DEVEIRGPYGNF 97 (99)
T ss_dssp TSCTT----SEEEEEEEESSE
T ss_pred hCCCC----CEEEEEEccccc
Confidence 75544 789999999986
No 83
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.27 E-value=4.3e-12 Score=114.16 Aligned_cols=102 Identities=15% Similarity=0.187 Sum_probs=69.4
Q ss_pred EEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCchhhHHHhcccCCCCcccCCC-ceEEEEEEeCCCCCC
Q 005360 421 MVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADLSMLNIMLPVSDAPTELSKL-QLQIEAYVTRDSEQP 499 (700)
Q Consensus 421 lIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l~~~d~L~~~~~~~~~l~~~-~l~i~iyvTr~~~~~ 499 (700)
|||||+||||++|++++++++.. .++++|+|++|+.+|+.+.+++.++.. ... ++++... .++++++
T Consensus 1 lIagGtGIaP~~s~l~~~~~~~~------~~~v~l~~~~r~~~~~~~~~~l~~~~~-----~~~~~~~~~~~-~~~~~~~ 68 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLERND------NRKVTLFYGARTPEDLLFRDELEALAQ-----EYPNRFHVVYV-SSPDDGW 68 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHTC------TSEEEEEEEESSGGGSTTHHHHHHHHH-----HSTTCEEEEEE-TTTTSST
T ss_pred CeecceeHHHHHHHHHHHHHhCC------CCCEEEEEEEcccccccchhHHHHHHh-----hcccccccccc-ccccccc
Confidence 79999999999999999998733 689999999999999999999987653 222 3444333 3333333
Q ss_pred Ccchhhhhhhh----ccCCCCCCCCeEeEeCCcchHHHH
Q 005360 500 KTDTLKELQSI----WFKSNPSDSPVSGALGCNSWLWLA 534 (700)
Q Consensus 500 ~~~~~~~~~~~----~~~p~~~~~~~~~vcGp~~~~~~~ 534 (700)
....+...+.+ .......++..+.+|||++|+..+
T Consensus 69 ~~~~g~v~~~~~~~~~~~~~~~~~~~v~iCGp~~m~~~v 107 (109)
T PF00175_consen 69 DGFKGRVTDLLLEDLLPEKIDPDDTHVYICGPPPMMKAV 107 (109)
T ss_dssp TSEESSHHHHHHHHHHHHHHCTTTEEEEEEEEHHHHHHH
T ss_pred CCceeehhHHHHHhhcccccCCCCCEEEEECCHHHHHHh
Confidence 33333222222 111123456789999999998543
No 84
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.16 E-value=5.5e-10 Score=132.42 Aligned_cols=119 Identities=17% Similarity=0.097 Sum_probs=96.5
Q ss_pred ceEEEEEEEecCCeEEEEEeCCCC-cccCCCcEEEEEeCCCC--Cc-eeeeeEeecCCCCCCCeEEEEEEeCCCchHHHH
Q 005360 313 RARLLSARALPCGVVELNFSKSPG-LYYNPTSILFVNVPSIS--KL-QWHPFTVTSNCNMEQDKLSILVKTEGSWTQKLY 388 (700)
Q Consensus 313 ~~~vvs~~~l~~~~~~l~~~~~~~-~~~~pGq~v~L~~p~~s--~~-q~HPFTIas~p~~~~~~l~l~IK~~Gg~T~~L~ 388 (700)
..++++.+.+++++.+++++.|.- -.++||||+.|+.++.+ .. +..||||++.+. +++.+++.+|..|..|+.|.
T Consensus 792 ~~~Vv~~~~lap~i~~L~l~aP~iA~~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~-e~g~It~i~rvVGkgT~~Ls 870 (1028)
T PRK06567 792 TSRVNKINILDDKTFELIIHSPLAAKNFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDV-EKGLISFIVFEVGKSTSLCK 870 (1028)
T ss_pred ceEEEEEEEecCCEEEEEEeCcchhhcCCCCceEEEEeCCCCCccccCceeEEeeccCC-CCCEEEEEEEEEChHHHHHh
Confidence 458899999999999999987652 35889999999986422 22 557999998865 56789999999999999999
Q ss_pred hhhccCCCceEEEEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHH
Q 005360 389 QQISSSVDRLEVSVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIF 440 (700)
Q Consensus 389 ~~~~~~~~~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~ 440 (700)
++.++ ..+.+.||+|++.+ ....+++++||||+|++| +++.+.+
T Consensus 871 ~l~~G----d~v~v~GPLG~pF~-i~~~k~vLLVgGGVGiAp---Lak~Lk~ 914 (1028)
T PRK06567 871 TLSEN----EKVVLMGPTGSPLE-IPQNKKIVIVDFEVGNIG---LLKVLKE 914 (1028)
T ss_pred cCCCC----CEEEEEcccCCCCC-CCCCCeEEEEEccccHHH---HHHHHHH
Confidence 98776 66999999999865 334679999999999997 4465543
No 85
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=98.86 E-value=2.7e-09 Score=107.42 Aligned_cols=130 Identities=15% Similarity=0.167 Sum_probs=93.8
Q ss_pred cccceEEEEEEEecCCeEEEEEeCCCC----cccCCCcEEEEEeCCC--CCceeeeeEeecCCCCCCCeEEEEEEe--CC
Q 005360 310 SRNRARLLSARALPCGVVELNFSKSPG----LYYNPTSILFVNVPSI--SKLQWHPFTVTSNCNMEQDKLSILVKT--EG 381 (700)
Q Consensus 310 ~~~~~~vvs~~~l~~~~~~l~~~~~~~----~~~~pGq~v~L~~p~~--s~~q~HPFTIas~p~~~~~~l~l~IK~--~G 381 (700)
.+.++++......++|+.++.+.+..+ .+..||||+.+.--.+ +.-.-+-|+.+...+.-.+.+.+.+|. .|
T Consensus 148 G~~~F~vT~~~~~sSDv~~~~~~PK~~~~~~~~~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~rN~~R~sVr~~A~G 227 (385)
T KOG3378|consen 148 GEVEFKVTELINESSDVKSVYLGPKDPAFRISHAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDTCRNQFRISVRRVAGG 227 (385)
T ss_pred CccceeeeeeeccccceeEEEecCCCcceeeccCCCCceEEEeecCCccchhHHHHHHHhhhhhhhccceeEEEeehhch
Confidence 346788888888899999999865322 4578999999886332 211112233333222246789999998 45
Q ss_pred CchHHHHhhhccCCCceEEEEEccCCCCCCC---CCCCCeEEEEEcCCChhhHHHHHHHHHHhc
Q 005360 382 SWTQKLYQQISSSVDRLEVSVEGPYGPNSAH---FLRHESLVMVSGGSGISPFISIVRELIFQS 442 (700)
Q Consensus 382 g~T~~L~~~~~~~~~~~~v~VeGPyG~~~~~---~~~~~~vvlIAGG~GITp~lsil~~l~~~~ 442 (700)
-.+..+++.++. ++.+.+.-|-|++... .+....+++.|||+||||.+++++..+...
T Consensus 228 ~VS~~~H~~~KV---GD~v~~S~PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~C~ 288 (385)
T KOG3378|consen 228 VVSNFVHDNLKV---GDIVGVSPPAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALLCY 288 (385)
T ss_pred hhHHHhhccccc---cceeeccCCCccceeehhhhccCCceEEecCCcCccccHHHHHHHHhcC
Confidence 688889988776 5789999999998532 233478999999999999999999987653
No 86
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=98.73 E-value=8.4e-08 Score=109.93 Aligned_cols=162 Identities=15% Similarity=0.129 Sum_probs=108.7
Q ss_pred ceeeeeEeecCCCCCCCeEEEEEEe----------CCCchHHHHhhhccCCCceEEEEEccCC-CCCCCCCCCCeEEEEE
Q 005360 355 LQWHPFTVTSNCNMEQDKLSILVKT----------EGSWTQKLYQQISSSVDRLEVSVEGPYG-PNSAHFLRHESLVMVS 423 (700)
Q Consensus 355 ~q~HPFTIas~p~~~~~~l~l~IK~----------~Gg~T~~L~~~~~~~~~~~~v~VeGPyG-~~~~~~~~~~~vvlIA 423 (700)
...|=|||+|++...+++++++|.. .|..|..|.+.... ++.+++.++ -+ ++..+.+....++||+
T Consensus 371 lkPR~YSIsSs~~~~~~~vhltV~vV~y~~~~~~r~GvcS~~L~~~~~~-g~~i~v~v~--~n~nf~lp~~~~~PiIMIG 447 (587)
T COG0369 371 LKPRLYSIASSPGVSPDEVHLTVGVVRYQAEGRERYGVCSGYLADLLEE-GDTIPVFVQ--PNKNFRLPEDPETPIIMIG 447 (587)
T ss_pred CCCeeeEeccCCCCCCCeEEEEEEEEEeccCCCcccccchHHHHhhhcC-CCeEEEEec--cCCccccCCCCCCceEEEc
Confidence 3557799999998777777777754 47788899888874 344444443 33 3322223337899999
Q ss_pred cCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECC-CCchhhHHHhcccCCCCcccCCCceEEEEEEeCCCCCC-Cc
Q 005360 424 GGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKK-SADLSMLNIMLPVSDAPTELSKLQLQIEAYVTRDSEQP-KT 501 (700)
Q Consensus 424 GG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~-~~~l~~~d~L~~~~~~~~~l~~~~l~i~iyvTr~~~~~-~~ 501 (700)
-||||+|+.+++++-..+.. ..+..|++++|+ .+|..+.+|+.++.. ++...++....+|+.++. ..
T Consensus 448 ~GTGIAPFRafvq~r~~~~~------~gk~wLfFG~R~~~~DfLY~~Ewe~~~~-----~G~~~~l~~AfSRdq~~KiYV 516 (587)
T COG0369 448 PGTGIAPFRAFVQERAANGA------EGKNWLFFGCRHFTEDFLYQEEWEEYLK-----DGVLTRLDLAFSRDQEEKIYV 516 (587)
T ss_pred CCCCchhHHHHHHHHHhccc------cCceEEEecCCCCccchhhHHHHHHHHh-----cCCceeEEEEEeecCCCCccH
Confidence 99999999999999776543 348999999999 788888899987653 444678888999985322 22
Q ss_pred chhhhhhhhccCCCCCCCCeEeEeC-Ccch
Q 005360 502 DTLKELQSIWFKSNPSDSPVSGALG-CNSW 530 (700)
Q Consensus 502 ~~~~~~~~~~~~p~~~~~~~~~vcG-p~~~ 530 (700)
++....+.-....-.++.....||| ...|
T Consensus 517 Qd~lre~~del~~~l~~ga~~YVCGd~~~M 546 (587)
T COG0369 517 QDRLREQADELWEWLEEGAHIYVCGDAKGM 546 (587)
T ss_pred HHHHHHhHHHHHHHHHCCCEEEEeCCCccc
Confidence 2221111100011122447899999 5554
No 87
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=98.63 E-value=3.7e-06 Score=84.52 Aligned_cols=123 Identities=17% Similarity=0.061 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhc
Q 005360 154 RSVSLRLGYIGNTCWAFLFFPVTRGSSILPLVGLTSESSIKYHIWLGHLSNALFALHAVGFLIYWAMTNQMAEVLEWSET 233 (700)
Q Consensus 154 ~~va~R~G~ia~~~l~ll~l~~~Rnn~l~~ltG~~~e~~~~~Hrwlgr~~~~~~~iH~i~~~~~~~~~~~~~~~~~w~~~ 233 (700)
+.++..+|..|...+.+.++. +++.+++|++ +...+||++|..+++.+++|.+.|...... ..+++...--..
T Consensus 41 ~~~~~~tG~~Al~llll~l~l----~pL~~l~~~~--~l~~~RR~LGl~af~~a~lH~~~y~~~~~~-~~~~~~~~~i~~ 113 (205)
T PRK05419 41 KDIEHFTGLWALVFLLATLAV----TPLRRLTGQP--LLIRTRRLLGLWAFFYATLHLLSYLLLDLG-LDWSLLGKEIVK 113 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHcCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccHHHHHHHHHh
Confidence 467888999998877766654 4577888865 899999999999999999999988764321 112221110012
Q ss_pred ccchhHHHHHHHHHHHHHHhcchhHhhh-chhHHHHHHHHHHHHHHHHHHhh
Q 005360 234 YVSNVAGVIAIAIATVIWATSLPRFRRK-MFELFFYTHHLYILYIIFYVLHV 284 (700)
Q Consensus 234 ~~~~~~G~ia~~~l~~l~~~Sl~~iRr~-~YE~F~~~H~l~~~~lv~~~~H~ 284 (700)
......|.+|++.++.+.+||....||+ .| .+..+|.+..++.++...|.
T Consensus 114 ~~~i~~G~ia~~lLl~LaiTS~~~~~rrLg~-~Wk~LH~l~Y~a~~L~~~H~ 164 (205)
T PRK05419 114 RPYITVGMAAFLILLPLALTSTRASQRRLGK-RWQKLHRLVYLIAILAPLHY 164 (205)
T ss_pred chHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 2345679999999999999999998886 56 89999998877777888894
No 88
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=98.43 E-value=6.8e-07 Score=102.61 Aligned_cols=168 Identities=13% Similarity=0.178 Sum_probs=106.0
Q ss_pred CceeeeeEeecCCCCCCCeEEEEEEe------C------CCchHHHHhhhccCCCceE-EEEEccCCCCCCCCCCCCeEE
Q 005360 354 KLQWHPFTVTSNCNMEQDKLSILVKT------E------GSWTQKLYQQISSSVDRLE-VSVEGPYGPNSAHFLRHESLV 420 (700)
Q Consensus 354 ~~q~HPFTIas~p~~~~~~l~l~IK~------~------Gg~T~~L~~~~~~~~~~~~-v~VeGPyG~~~~~~~~~~~vv 420 (700)
..|.|+|||+|+|...++.+.+.+-. . |=.|..|.++..+ +... ....++..-..+ .+...+++
T Consensus 419 ~L~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~~--~~~~~~~~~~~s~frlp-~dp~~PiI 495 (645)
T KOG1158|consen 419 RLQPRYYSISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKPG--EKVPNPVPVGKSMFRLP-SDPSTPII 495 (645)
T ss_pred cccccccccccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHHhcCCc--cccCcceeecccceecC-CCCCCcEE
Confidence 57899999999987666666555533 1 4467777776655 2222 233333332222 23456899
Q ss_pred EEEcCCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCCch-hhHHHhcccCCCCcccCCCceEEEEEEeCCCC--
Q 005360 421 MVSGGSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSADL-SMLNIMLPVSDAPTELSKLQLQIEAYVTRDSE-- 497 (700)
Q Consensus 421 lIAGG~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~~l-~~~d~L~~~~~~~~~l~~~~l~i~iyvTr~~~-- 497 (700)
||+-||||+||.+.+++.....+.+...... +.|++++|+.++. .+.+|+.+... .....++..-++|+..
T Consensus 496 MIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~-~~Lf~GcR~~~~d~LY~eE~~~~~~-----~~~l~~l~~A~SReq~~~ 569 (645)
T KOG1158|consen 496 MIGPGTGIAPFRGFLQERLFLKQQGPKFGGG-MWLFFGCRNSDEDYLYREEWEEYKK-----AGILTRLDVAFSREQTPK 569 (645)
T ss_pred EEcCCCcchhhHHHHHHHHHhhhcCccCCcc-eEEEEeCCCchHHHHHHHHHHHHHh-----cCcchhheeeeeccCCCC
Confidence 9999999999999999988765422222334 8999999999888 55677765432 3455678888999852
Q ss_pred CCCcchh--hhhhhhccCCCCCCCCeEeEeCCcc-hH
Q 005360 498 QPKTDTL--KELQSIWFKSNPSDSPVSGALGCNS-WL 531 (700)
Q Consensus 498 ~~~~~~~--~~~~~~~~~p~~~~~~~~~vcGp~~-~~ 531 (700)
.-..++. ...++++.- -..+.+.+.|||.-. |.
T Consensus 570 k~YVQd~l~e~~d~v~~~-L~~~~g~iYvCGd~~~Ma 605 (645)
T KOG1158|consen 570 KIYVQDRLREYADEVWEL-LKKEGGHIYVCGDAKGMA 605 (645)
T ss_pred ceehhhHHHHHHHHHHHH-HhcCCcEEEEecCCccch
Confidence 1122222 111122211 112478899999998 54
No 89
>COG2717 Predicted membrane protein [Function unknown]
Probab=97.77 E-value=0.0014 Score=65.38 Aligned_cols=148 Identities=16% Similarity=0.023 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcc
Q 005360 155 SVSLRLGYIGNTCWAFLFFPVTRGSSILPLVGLTSESSIKYHIWLGHLSNALFALHAVGFLIYWAMTNQMAEVLEWSETY 234 (700)
Q Consensus 155 ~va~R~G~ia~~~l~ll~l~~~Rnn~l~~ltG~~~e~~~~~Hrwlgr~~~~~~~iH~i~~~~~~~~~~~~~~~~~w~~~~ 234 (700)
.+-..+|.-+...+-..+.. .+...+.+++ ..+.+-|-+|..+++.++.|...|......-+ +.....--...
T Consensus 42 ~~~~~~g~~al~fLl~~la~----tp~~~~~~~~--~l~~~Rr~LGl~af~~~~lH~~~Y~~~~l~~~-~~~~~~d~~~r 114 (209)
T COG2717 42 EAQHFTGIWALIFLLVTLAV----TPLARLLKQP--KLIRIRRALGLWAFFYALLHFTAYLVLDLGLD-LALLGLDLLKR 114 (209)
T ss_pred HHHHHhhHHHHHHHHHHHHH----HHHHHHhcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-HHHhhHHHHHh
Confidence 34445566554433322221 2222333333 67889999999999999999999976532211 22111100112
Q ss_pred cchhHHHHHHHHHHHHHHhcchhHhhhchhHHHHHHHHHHHHHHHHHHhhhh-----hHHHHHHHH-HHHHHHHHHHhhh
Q 005360 235 VSNVAGVIAIAIATVIWATSLPRFRRKMFELFFYTHHLYILYIIFYVLHVGP-----AYFCMILPG-IFLFAVDRYLRFL 308 (700)
Q Consensus 235 ~~~~~G~ia~~~l~~l~~~Sl~~iRr~~YE~F~~~H~l~~~~lv~~~~H~~~-----~~~~~i~~~-i~l~~~dR~lR~~ 308 (700)
.....|.+|++.+..+.+||.++.|||.=..+..+|.+..++++...+|.-. ...+.++.. .+.+...|+.+..
T Consensus 115 pyitiG~iaflll~pLalTS~k~~~rrlG~rW~~LHrLvYl~~~L~~lH~~~s~K~~~~~~vlY~ii~~~lll~R~~k~~ 194 (209)
T COG2717 115 PYITIGMIAFLLLIPLALTSFKWVRRRLGKRWKKLHRLVYLALILGALHYLWSVKIDMPEPVLYAIIFAVLLLLRVTKTR 194 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3446899999999999999999999997799999999999889999999732 112223332 2346777877664
Q ss_pred c
Q 005360 309 Q 309 (700)
Q Consensus 309 ~ 309 (700)
+
T Consensus 195 ~ 195 (209)
T COG2717 195 S 195 (209)
T ss_pred H
Confidence 3
No 90
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=97.47 E-value=0.00044 Score=75.79 Aligned_cols=153 Identities=18% Similarity=0.211 Sum_probs=93.3
Q ss_pred eeeeeEeecCCCCCCCeEEEEEEe-----------CCCchHHHHhhhccCCCceEEEEEccCCCCCCCCCCCCeEEEEEc
Q 005360 356 QWHPFTVTSNCNMEQDKLSILVKT-----------EGSWTQKLYQQISSSVDRLEVSVEGPYGPNSAHFLRHESLVMVSG 424 (700)
Q Consensus 356 q~HPFTIas~p~~~~~~l~l~IK~-----------~Gg~T~~L~~~~~~~~~~~~v~VeGPyG~~~~~~~~~~~vvlIAG 424 (700)
..|.|||+|+|. ..++++.|.. +|-.|+.|.++.++ +.+++.|+ =|+...+......++||+-
T Consensus 367 rPR~fSIas~~~--~~~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~g--~~i~~~v~--~g~l~~p~~~~~PlImVGP 440 (574)
T KOG1159|consen 367 RPRAFSIASSPG--AHHLELLVAIVEYKTILKEPRRGLCSNWLASLKPG--DEIPIKVR--PGTLYFPSDLNKPLIMVGP 440 (574)
T ss_pred ccceeeeccCCC--CCceeEEEEEEEEeeeccccccchhHHHHhhcCCC--CeEEEEEe--cCccccCCCCCCCeEEEcC
Confidence 558899999985 3457766543 67899999988766 45666665 2333222223568999999
Q ss_pred CCChhhHHHHHHHHHHhcCCCCCCCCCeEEEEEEECCCC-chhhHHHhcccCCCCcccCCCceEEEEEEeCCCCCCCcch
Q 005360 425 GSGISPFISIVRELIFQSNNNPDYKIPNVHLICVFKKSA-DLSMLNIMLPVSDAPTELSKLQLQIEAYVTRDSEQPKTDT 503 (700)
Q Consensus 425 G~GITp~lsil~~l~~~~~~~~~~~~~~I~Liw~vR~~~-~l~~~d~L~~~~~~~~~l~~~~l~i~iyvTr~~~~~~~~~ 503 (700)
|+||||+.+++++-..+.. ...-|++++|+.+ |..|.|+..+.. ....+...+|+++ ...-.
T Consensus 441 GTGvAPfRa~i~er~~q~~-------~~~~lFfGCR~K~~Df~y~~eW~~~~---------~~~~~~AFSRDqe-~kvYV 503 (574)
T KOG1159|consen 441 GTGVAPFRALIQERIYQGD-------KENVLFFGCRNKDKDFLYEDEWTELN---------KRAFHTAFSRDQE-QKVYV 503 (574)
T ss_pred CCCcccHHHHHHHHHhhcc-------CCceEEEecccCCccccccchhhhhh---------cchhhhhcccccc-cceeH
Confidence 9999999999998775322 2347888999764 444555554222 2233335566543 11212
Q ss_pred hhhhhhhcc---CCCCCCCCeEeEeCCcchH
Q 005360 504 LKELQSIWF---KSNPSDSPVSGALGCNSWL 531 (700)
Q Consensus 504 ~~~~~~~~~---~p~~~~~~~~~vcGp~~~~ 531 (700)
+...++.-. .--.+++.+..|||..+-|
T Consensus 504 Qh~i~e~g~~v~~Ll~~~gA~~fvaGsS~~M 534 (574)
T KOG1159|consen 504 QHKIRENGEEVWDLLDNLGAYFFVAGSSGKM 534 (574)
T ss_pred HHHHHHhhHHHHHHHhccCCEEEEecCCCCC
Confidence 211111110 0112367899999999655
No 91
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=96.82 E-value=0.12 Score=53.68 Aligned_cols=138 Identities=9% Similarity=0.077 Sum_probs=96.6
Q ss_pred cceEEEEEEEecCCeEEEEEeCCCCcc----cCCCcEEEEEeCCCCC--------------------ceeeeeEeecCCC
Q 005360 312 NRARLLSARALPCGVVELNFSKSPGLY----YNPTSILFVNVPSISK--------------------LQWHPFTVTSNCN 367 (700)
Q Consensus 312 ~~~~vvs~~~l~~~~~~l~~~~~~~~~----~~pGq~v~L~~p~~s~--------------------~q~HPFTIas~p~ 367 (700)
+.+++..++.++++.+++++.-+.... ..++||+.|-||..+. ...|+|||-+...
T Consensus 18 ~~~~V~~~~~lsP~m~Rv~~~g~~l~~f~~~~~~d~~ikL~fp~~~~~~~~~~~~~~~~~~~~~~~r~~~R~YTiR~~d~ 97 (265)
T COG2375 18 HEATVTRVTQLSPHMVRVVLGGEGLAGFASLGFGDQHIKLFFPPPDGDPPRLPVLEERGAVPPGAQRPPQRTYTIRAVDA 97 (265)
T ss_pred eEEEEEEEEecCCCeEEEEEecccccccccccCCCceeEEEecCccCCCCCCcccccccccCccccCCCcccceeeeecc
Confidence 467888999999999999998655333 3344599999975421 2269999975532
Q ss_pred CCCCe--EEEEEE-eCCCchHHHHhhhccCCCceEEEEEccCCCCCCCCCCCCeEEEEEcCCChhhHHHHHHHHHHhcCC
Q 005360 368 MEQDK--LSILVK-TEGSWTQKLYQQISSSVDRLEVSVEGPYGPNSAHFLRHESLVMVSGGSGISPFISIVRELIFQSNN 444 (700)
Q Consensus 368 ~~~~~--l~l~IK-~~Gg~T~~L~~~~~~~~~~~~v~VeGPyG~~~~~~~~~~~vvlIAGG~GITp~lsil~~l~~~~~~ 444 (700)
+.++ +.|++- ..|-.++.-.+...+ +++.+-||-|...+ ...++..+|++==++++.+..+++++-..
T Consensus 98 -~~~e~~vDfVlH~~~gpas~WA~~a~~G----D~l~i~GP~g~~~p-~~~~~~~lLigDetAlPAIa~iLE~lp~~--- 168 (265)
T COG2375 98 -AAGELDVDFVLHGEGGPASRWARTAQPG----DTLTIMGPRGSLVP-PEAADWYLLIGDETALPAIARILETLPAD--- 168 (265)
T ss_pred -cccEEEEEEEEcCCCCcchhhHhhCCCC----CEEEEeCCCCCCCC-CCCcceEEEeccccchHHHHHHHHhCCCC---
Confidence 3444 555555 345555555554444 78999999999665 46889999999999999999999887432
Q ss_pred CCCCCCCeEEEEEEECCCCc
Q 005360 445 NPDYKIPNVHLICVFKKSAD 464 (700)
Q Consensus 445 ~~~~~~~~I~Liw~vR~~~~ 464 (700)
.+.+.+-.+++.+|
T Consensus 169 ------~~~~a~lev~d~ad 182 (265)
T COG2375 169 ------TPAEAFLEVDDAAD 182 (265)
T ss_pred ------CceEEEEEeCChHH
Confidence 23355555555544
No 92
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=95.77 E-value=0.065 Score=49.15 Aligned_cols=90 Identities=16% Similarity=0.127 Sum_probs=54.2
Q ss_pred EEEEEEEecCCeEEEEEeCCCCcc---cCCCcEEEEEeCCCCC---------------------ceeeeeEeecCCCCCC
Q 005360 315 RLLSARALPCGVVELNFSKSPGLY---YNPTSILFVNVPSISK---------------------LQWHPFTVTSNCNMEQ 370 (700)
Q Consensus 315 ~vvs~~~l~~~~~~l~~~~~~~~~---~~pGq~v~L~~p~~s~---------------------~q~HPFTIas~p~~~~ 370 (700)
++++++.++.+.+++++.-+.-.. ..||||+.|.+|..+. ...+.||+-+... +.
T Consensus 1 ~V~~~~~ltP~~~Rv~l~g~~l~~~~~~~~d~~ikL~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~R~YTvR~~d~-~~ 79 (117)
T PF08021_consen 1 TVVRVERLTPHMRRVTLGGEDLAGFPSWGPDQHIKLFFPPPGGDPPLPPPLDEGGYRWPPDEQRPVMRTYTVRRFDP-ET 79 (117)
T ss_dssp EEEEEEEEETTEEEEEEESGGGTT--S--TT-EEEEEE--TTS----------------------EEEEEE--EEET-T-
T ss_pred CEEEEEECCCCEEEEEEECCCcccCccCCCCcEEEEEeCCCCCCccccccccccccccccccCCCCCCCcCEeeEcC-CC
Confidence 467888999999999998654222 4699999999986432 1579999988754 55
Q ss_pred CeEEEEEEeCCC---chHHHHhhhccCCCceEEEEEccCCCC
Q 005360 371 DKLSILVKTEGS---WTQKLYQQISSSVDRLEVSVEGPYGPN 409 (700)
Q Consensus 371 ~~l~l~IK~~Gg---~T~~L~~~~~~~~~~~~v~VeGPyG~~ 409 (700)
+++++-+-..|+ .++...+...+ +++.+-||-|++
T Consensus 80 ~~l~iDfv~Hg~~Gpas~WA~~A~pG----d~v~v~gP~g~~ 117 (117)
T PF08021_consen 80 GELDIDFVLHGDEGPASRWARSARPG----DRVGVTGPRGSF 117 (117)
T ss_dssp -EEEEEEE--SS--HHHHHHHH--TT-----EEEEEEEE---
T ss_pred CEEEEEEEECCCCCchHHHHhhCCCC----CEEEEeCCCCCC
Confidence 677776666543 66666665555 789999997763
No 93
>PRK08051 fre FMN reductase; Validated
Probab=93.26 E-value=0.052 Score=55.65 Aligned_cols=32 Identities=16% Similarity=0.285 Sum_probs=28.0
Q ss_pred EEEeCCcchHHHHHHHH-hcCCC--CceEEeeccc
Q 005360 667 VLVCGPRKMRHEVAKIC-SSGLA--DNLHFESISF 698 (700)
Q Consensus 667 V~vcGP~~m~~~va~~c-~~~~~--~~~hf~s~~f 698 (700)
|++|||+.|.++|.+.+ ++.+. +++|+|+++|
T Consensus 197 vyicGp~~m~~~v~~~l~~~~G~~~~~i~~e~f~~ 231 (232)
T PRK08051 197 IYIAGRFEMAKIARELFCRERGAREEHLFGDAFAF 231 (232)
T ss_pred EEEECCHHHHHHHHHHHHHHcCCCHHHeecccccc
Confidence 99999999999999999 88776 6688888665
No 94
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=91.98 E-value=0.16 Score=51.78 Aligned_cols=32 Identities=28% Similarity=0.395 Sum_probs=27.4
Q ss_pred eEEEEeCCcchHHHHHHHHhcCCC--CceEEeec
Q 005360 665 VGVLVCGPRKMRHEVAKICSSGLA--DNLHFESI 696 (700)
Q Consensus 665 vgV~vcGP~~m~~~va~~c~~~~~--~~~hf~s~ 696 (700)
--|++|||+.|++++.+.+++.+. +++|+|++
T Consensus 198 ~~v~icGp~~m~~~~~~~l~~~gv~~~~i~~e~f 231 (231)
T cd06215 198 RTVFVCGPAGFMKAVKSLLAELGFPMSRFHQESF 231 (231)
T ss_pred CeEEEECCHHHHHHHHHHHHHcCCCHHHeeeecC
Confidence 459999999999999999998777 66887764
No 95
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=91.38 E-value=0.14 Score=52.16 Aligned_cols=27 Identities=30% Similarity=0.537 Sum_probs=23.3
Q ss_pred EEEEeCCcchHHHHHHHHhcCCCCceEEee
Q 005360 666 GVLVCGPRKMRHEVAKICSSGLADNLHFES 695 (700)
Q Consensus 666 gV~vcGP~~m~~~va~~c~~~~~~~~hf~s 695 (700)
-|++|||+.|+++|.+.+++. ++|.|.
T Consensus 192 ~v~~CGP~~m~~~~~~~~~~~---~~~~e~ 218 (220)
T cd06197 192 EVYLCGPPALEKAVLEWLEGK---KVHRES 218 (220)
T ss_pred cEEEECcHHHHHHHHHHhhhc---eeEecc
Confidence 399999999999999999985 666665
No 96
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=91.33 E-value=0.18 Score=51.84 Aligned_cols=32 Identities=19% Similarity=0.342 Sum_probs=26.5
Q ss_pred eEEEEeCCcchHHHHHHHHhcCCC--------CceEEeec
Q 005360 665 VGVLVCGPRKMRHEVAKICSSGLA--------DNLHFESI 696 (700)
Q Consensus 665 vgV~vcGP~~m~~~va~~c~~~~~--------~~~hf~s~ 696 (700)
--|++|||+.|+++|++++++.+. .++|+|++
T Consensus 202 ~~vyiCGp~~m~~~~~~~l~~~G~~~~~~~~~~~~~~E~~ 241 (241)
T cd06195 202 SHVMLCGNPQMIDDTQELLKEKGFSKNHRRKPGNITVEKY 241 (241)
T ss_pred CEEEEeCCHHHHHHHHHHHHHcCCCccccCCCceEEEecC
Confidence 459999999999999999999665 45777763
No 97
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=91.17 E-value=0.14 Score=52.21 Aligned_cols=31 Identities=23% Similarity=0.390 Sum_probs=27.3
Q ss_pred EEEEeCCcchHHHHHHHHhcCCC--CceEEeec
Q 005360 666 GVLVCGPRKMRHEVAKICSSGLA--DNLHFESI 696 (700)
Q Consensus 666 gV~vcGP~~m~~~va~~c~~~~~--~~~hf~s~ 696 (700)
-|++|||+.|+++|.+.+++.+. +++|+|++
T Consensus 203 ~v~icGp~~m~~~v~~~l~~~Gv~~~~i~~E~f 235 (235)
T cd06217 203 RVYVCGPPAFVEAATRLLLELGVPRDRIRTEAF 235 (235)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCHHHEeeccC
Confidence 49999999999999999999776 67888864
No 98
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=91.13 E-value=0.2 Score=50.84 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=27.2
Q ss_pred eEEEEeCCcchHHHHHHHHhcCCC--CceEEeec
Q 005360 665 VGVLVCGPRKMRHEVAKICSSGLA--DNLHFESI 696 (700)
Q Consensus 665 vgV~vcGP~~m~~~va~~c~~~~~--~~~hf~s~ 696 (700)
--|++|||+.|++++.++.++.+. +++|+|++
T Consensus 191 ~~v~vCGp~~m~~~~~~~l~~~G~~~~~i~~e~f 224 (224)
T cd06189 191 FDVYACGSPEMVYAARDDFVEKGLPEENFFSDAF 224 (224)
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCCHHHcccCCC
Confidence 459999999999999999999776 66887764
No 99
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=91.07 E-value=0.13 Score=54.45 Aligned_cols=34 Identities=26% Similarity=0.552 Sum_probs=28.3
Q ss_pred CeeEEEEeCCcchHHHHHHHHhcCCC--CceEEeec
Q 005360 663 TDVGVLVCGPRKMRHEVAKICSSGLA--DNLHFESI 696 (700)
Q Consensus 663 ~~vgV~vcGP~~m~~~va~~c~~~~~--~~~hf~s~ 696 (700)
.+.-||+|||+.|++++.+.+.+.+. .++|+|.+
T Consensus 248 ~~~~vyiCGP~~m~~~~~~~l~~~Gv~~~~i~~e~F 283 (283)
T cd06188 248 EDIEFYLCGPPPMNSAVIKMLDDLGVPRENIAFDDF 283 (283)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCCHHHeeccCC
Confidence 34569999999999999999999766 66888764
No 100
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=90.92 E-value=0.23 Score=51.19 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=27.6
Q ss_pred eEEEEeCCcchHHHHHHHHhcCCC-CceEEeec
Q 005360 665 VGVLVCGPRKMRHEVAKICSSGLA-DNLHFESI 696 (700)
Q Consensus 665 vgV~vcGP~~m~~~va~~c~~~~~-~~~hf~s~ 696 (700)
--|++|||++|++++.+..++.+. +++|+|.+
T Consensus 211 ~~vyvcGp~~m~~~~~~~l~~~Gv~~~i~~e~F 243 (243)
T cd06216 211 RQVYACGPPGFLDAAEELLEAAGLADRLHTERF 243 (243)
T ss_pred CeEEEECCHHHHHHHHHHHHHCCCccceeeccC
Confidence 469999999999999999999766 67888764
No 101
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=90.69 E-value=0.26 Score=50.12 Aligned_cols=49 Identities=22% Similarity=0.310 Sum_probs=35.2
Q ss_pred cCCCChHHHHhhc--CCCeeEEEEeCCcchHHHHHHHHhcCCC--CceEEeec
Q 005360 648 GERPNLNKILLDV--KGTDVGVLVCGPRKMRHEVAKICSSGLA--DNLHFESI 696 (700)
Q Consensus 648 G~Rp~~~~i~~~~--~~~~vgV~vcGP~~m~~~va~~c~~~~~--~~~hf~s~ 696 (700)
|.+-.+++.+.+. ...+..|++|||+.|.++|++.+++.+. +++|+|.+
T Consensus 175 ~~~g~v~~~~~~~~~~~~~~~v~icGp~~m~~~~~~~l~~~G~~~~~i~~E~F 227 (228)
T cd06209 175 PRKGYVTDHLEAEDLNDGDVDVYLCGPPPMVDAVRSWLDEQGIEPANFYYEKF 227 (228)
T ss_pred CCcCCccHHHHHhhccCCCcEEEEeCCHHHHHHHHHHHHHcCCCHHHEeeecc
Confidence 3344566655443 2234459999999999999999999877 46777765
No 102
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=90.17 E-value=0.21 Score=54.21 Aligned_cols=34 Identities=12% Similarity=0.213 Sum_probs=29.7
Q ss_pred eEEEEeCCcchHHHHHHHHhcCCC--CceEEeeccc
Q 005360 665 VGVLVCGPRKMRHEVAKICSSGLA--DNLHFESISF 698 (700)
Q Consensus 665 vgV~vcGP~~m~~~va~~c~~~~~--~~~hf~s~~f 698 (700)
--||+|||+.|++++.+...+.+. +++|+|++.+
T Consensus 299 ~~vy~CGp~~m~~~~~~~l~~~G~~~~~i~~e~F~~ 334 (339)
T PRK07609 299 HQVYACGSPVMVYAARDDFVAAGLPAEEFFADAFTY 334 (339)
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCHHHeEEeeccc
Confidence 349999999999999999999776 7799998765
No 103
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=90.08 E-value=0.18 Score=50.81 Aligned_cols=33 Identities=27% Similarity=0.447 Sum_probs=27.9
Q ss_pred eeEEEEeCCcchHHHHHHHHhcCCC--CceEEeec
Q 005360 664 DVGVLVCGPRKMRHEVAKICSSGLA--DNLHFESI 696 (700)
Q Consensus 664 ~vgV~vcGP~~m~~~va~~c~~~~~--~~~hf~s~ 696 (700)
+--|++|||+.|++++.+.+++.+. +++|+|.+
T Consensus 181 ~~~vyicGp~~m~~~v~~~l~~~Gv~~~~I~~E~f 215 (216)
T cd06198 181 DADVWFCGPPGMADALEKGLRALGVPARRFHYERF 215 (216)
T ss_pred CCeEEEECcHHHHHHHHHHHHHcCCChHhcchhhc
Confidence 4459999999999999999999766 66888764
No 104
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=89.48 E-value=0.27 Score=53.55 Aligned_cols=32 Identities=22% Similarity=0.413 Sum_probs=28.0
Q ss_pred EEEEeCCcchHHHHHHHHhcCCC--CceEEeecc
Q 005360 666 GVLVCGPRKMRHEVAKICSSGLA--DNLHFESIS 697 (700)
Q Consensus 666 gV~vcGP~~m~~~va~~c~~~~~--~~~hf~s~~ 697 (700)
-||+|||+.|++++.+.+.+.+. +++|+|.+.
T Consensus 303 ~vy~CGp~~mv~~~~~~L~~~Gv~~~~i~~E~F~ 336 (340)
T PRK11872 303 DMYLCGPPPMVEAVKQWLDEQALENYRLYYEKFT 336 (340)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCHHHEEEeeec
Confidence 49999999999999999998766 578888764
No 105
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=89.37 E-value=0.4 Score=48.50 Aligned_cols=49 Identities=20% Similarity=0.380 Sum_probs=35.1
Q ss_pred cCCCChHHHHhhcC--CCeeEEEEeCCcchHHHHHHHHhcCCC--CceEEeec
Q 005360 648 GERPNLNKILLDVK--GTDVGVLVCGPRKMRHEVAKICSSGLA--DNLHFESI 696 (700)
Q Consensus 648 G~Rp~~~~i~~~~~--~~~vgV~vcGP~~m~~~va~~c~~~~~--~~~hf~s~ 696 (700)
|++-.+.+.+.+.. .++--|++|||+.|++++.+..++.+. .++|+|.+
T Consensus 172 ~~~g~~~~~~~~~~~~~~~~~v~vcGp~~~~~~v~~~l~~~G~~~~~i~~e~f 224 (224)
T cd06187 172 GRRGLVTDVVGRDGPDWADHDIYICGPPAMVDATVDALLARGAPPERIHFDKF 224 (224)
T ss_pred CCcccHHHHHHHhccccccCEEEEECCHHHHHHHHHHHHHcCCCHHHeeccCC
Confidence 44556666665431 122349999999999999999999766 56777753
No 106
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=88.94 E-value=0.29 Score=53.13 Aligned_cols=46 Identities=22% Similarity=0.259 Sum_probs=34.1
Q ss_pred CCCChHHHHhh-c---CCCeeEEEEeCCcchHHHHHHHHhcCCC--CceEEeecc
Q 005360 649 ERPNLNKILLD-V---KGTDVGVLVCGPRKMRHEVAKICSSGLA--DNLHFESIS 697 (700)
Q Consensus 649 ~Rp~~~~i~~~-~---~~~~vgV~vcGP~~m~~~va~~c~~~~~--~~~hf~s~~ 697 (700)
+|.+- +++.+ . .+.. ||+|||+.|+++|++..++.+. +++|+|++.
T Consensus 187 grl~~-~~l~~~~~~~~~~~--vyiCGP~~m~~~v~~~l~~~Gv~~~~i~~E~F~ 238 (332)
T PRK10684 187 GRLTR-ELLQQAVPDLASRT--VMTCGPAPYMDWVEQEVKALGVTADRFFKEKFF 238 (332)
T ss_pred cccCH-HHHHHhcccccCCE--EEEECCHHHHHHHHHHHHHcCCCHHHeEeeccC
Confidence 37764 34433 2 2334 9999999999999999999766 578888864
No 107
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=88.67 E-value=0.27 Score=49.61 Aligned_cols=44 Identities=23% Similarity=0.339 Sum_probs=31.3
Q ss_pred CCChHHHHhhc-CCCeeEEEEeCCcchHHHHHHHHhcCCC--CceEEe
Q 005360 650 RPNLNKILLDV-KGTDVGVLVCGPRKMRHEVAKICSSGLA--DNLHFE 694 (700)
Q Consensus 650 Rp~~~~i~~~~-~~~~vgV~vcGP~~m~~~va~~c~~~~~--~~~hf~ 694 (700)
|.+ ++++.+. ...+--|++|||+.|++++++.+.+.+. .++|+|
T Consensus 172 ~~~-~~~l~~~~~~~~~~vyiCGp~~m~~~~~~~l~~~G~~~~~i~~E 218 (218)
T cd06196 172 RID-KAFLKQHVTDFNQHFYVCGPPPMEEAINGALKELGVPEDSIVFE 218 (218)
T ss_pred EEC-HHHHHHhcCCCCCEEEEECCHHHHHHHHHHHHHcCCCHHHEecC
Confidence 655 3455443 2222249999999999999999999776 567775
No 108
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=88.63 E-value=0.42 Score=49.03 Aligned_cols=32 Identities=22% Similarity=0.417 Sum_probs=27.5
Q ss_pred eEEEEeCCcchHHHHHHHHhcCCC--CceEEeec
Q 005360 665 VGVLVCGPRKMRHEVAKICSSGLA--DNLHFESI 696 (700)
Q Consensus 665 vgV~vcGP~~m~~~va~~c~~~~~--~~~hf~s~ 696 (700)
--|++|||+.|++++.+...+.+. +++|+|.+
T Consensus 205 ~~vyvCGp~~m~~~~~~~L~~~Gv~~~~i~~e~F 238 (238)
T cd06211 205 HKAYLCGPPPMIDACIKTLMQGRLFERDIYYEKF 238 (238)
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCHHHccccCC
Confidence 349999999999999999999887 56888754
No 109
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=88.44 E-value=0.5 Score=48.10 Aligned_cols=49 Identities=16% Similarity=0.294 Sum_probs=34.0
Q ss_pred cCCCChHHHHhhcCCCeeEEEEeCCcchHHHHHHHHhcCCC--CceEEeec
Q 005360 648 GERPNLNKILLDVKGTDVGVLVCGPRKMRHEVAKICSSGLA--DNLHFESI 696 (700)
Q Consensus 648 G~Rp~~~~i~~~~~~~~vgV~vcGP~~m~~~va~~c~~~~~--~~~hf~s~ 696 (700)
|.+..+++.+.+....+--|++|||+.|.+++++.+++.+. +++|.|++
T Consensus 177 g~~g~v~~~l~~~~~~~~~v~~CGp~~~~~~~~~~l~~~G~~~~~i~~e~f 227 (227)
T cd06213 177 GARGLVTEHIAEVLLAATEAYLCGPPAMIDAAIAVLRALGIAREHIHADRF 227 (227)
T ss_pred CCcccHHHHHHhhccCCCEEEEECCHHHHHHHHHHHHHcCCCHHHEeccCC
Confidence 43445555554432222349999999999999999999776 56777753
No 110
>PRK05713 hypothetical protein; Provisional
Probab=88.35 E-value=0.29 Score=52.60 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=26.2
Q ss_pred EEEeCCcchHHHHHHHHhcCCC--CceEEeec
Q 005360 667 VLVCGPRKMRHEVAKICSSGLA--DNLHFESI 696 (700)
Q Consensus 667 V~vcGP~~m~~~va~~c~~~~~--~~~hf~s~ 696 (700)
||+|||+.|.+++.+.+++.+. .++|+|.+
T Consensus 277 vyiCGp~~mv~~~~~~L~~~Gv~~~~i~~e~F 308 (312)
T PRK05713 277 ALLCGSPASVERFARRLYLAGLPRNQLLADVF 308 (312)
T ss_pred EEEeCCHHHHHHHHHHHHHcCCCHHHeeeccc
Confidence 9999999999999999998777 55777764
No 111
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=88.32 E-value=0.31 Score=49.67 Aligned_cols=33 Identities=21% Similarity=0.395 Sum_probs=27.2
Q ss_pred eeEEEEeCCcchHHHHHHHHhcCC---CCceEEeec
Q 005360 664 DVGVLVCGPRKMRHEVAKICSSGL---ADNLHFESI 696 (700)
Q Consensus 664 ~vgV~vcGP~~m~~~va~~c~~~~---~~~~hf~s~ 696 (700)
+-.|++|||+.|++++.+..++.+ ..++|+|.+
T Consensus 196 ~~~vyiCGp~~m~~~v~~~l~~~g~~~~~~i~~e~f 231 (232)
T cd06190 196 EFEFYFAGPPPMVDAVQRMLMIEGVVPFDQIHFDRF 231 (232)
T ss_pred ccEEEEECCHHHHHHHHHHHHHhCCCChHheeeccc
Confidence 345999999999999999887754 367999876
No 112
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=88.00 E-value=0.36 Score=54.05 Aligned_cols=32 Identities=22% Similarity=0.409 Sum_probs=27.7
Q ss_pred eEEEEeCCcchHHHHHHHHhcCCC--CceEEeec
Q 005360 665 VGVLVCGPRKMRHEVAKICSSGLA--DNLHFESI 696 (700)
Q Consensus 665 vgV~vcGP~~m~~~va~~c~~~~~--~~~hf~s~ 696 (700)
--||+|||+.|+++|.+.+++.+. .++|+|.+
T Consensus 374 ~~vyiCGP~~m~~av~~~L~~~Gv~~~~I~~E~F 407 (409)
T PRK05464 374 CEYYMCGPPMMNAAVIKMLKDLGVEDENILLDDF 407 (409)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCHHHEEEccc
Confidence 349999999999999999999766 66888875
No 113
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=87.97 E-value=0.62 Score=47.61 Aligned_cols=31 Identities=16% Similarity=0.371 Sum_probs=26.6
Q ss_pred EEEEeCCcchHHHHHHHHhcCCC--CceEEeec
Q 005360 666 GVLVCGPRKMRHEVAKICSSGLA--DNLHFESI 696 (700)
Q Consensus 666 gV~vcGP~~m~~~va~~c~~~~~--~~~hf~s~ 696 (700)
-|++|||+.|.+++.+..++.+. .++|.|.+
T Consensus 203 ~vyicGp~~m~~~~~~~l~~~G~~~~~i~~E~f 235 (236)
T cd06210 203 DIYLCGPPGMVDAAFAAAREAGVPDEQVYLEKF 235 (236)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCHHHeeeccc
Confidence 38999999999999999999776 46887765
No 114
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=86.74 E-value=0.95 Score=46.86 Aligned_cols=48 Identities=19% Similarity=0.281 Sum_probs=34.7
Q ss_pred cCCCChHHHHhhcC--CCeeEEEEeCCcchHHHHHHHHhcCCCCceEEeec
Q 005360 648 GERPNLNKILLDVK--GTDVGVLVCGPRKMRHEVAKICSSGLADNLHFESI 696 (700)
Q Consensus 648 G~Rp~~~~i~~~~~--~~~vgV~vcGP~~m~~~va~~c~~~~~~~~hf~s~ 696 (700)
|.+..+++.+.+.. .++--|++|||+.|.+++.+.+++.+.+ .|++..
T Consensus 162 ~~~g~v~~~l~~~~~~~~~~~vyiCGp~~mv~~~~~~L~~~Gv~-~~~~~~ 211 (246)
T cd06218 162 GTKGFVTDLLKELLAEARPDVVYACGPEPMLKAVAELAAERGVP-CQVSLE 211 (246)
T ss_pred CcceehHHHHHHHhhccCCCEEEEECCHHHHHHHHHHHHhcCCC-EEEEec
Confidence 44567778776652 1344699999999999999999987664 444443
No 115
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=85.85 E-value=0.55 Score=52.50 Aligned_cols=31 Identities=23% Similarity=0.436 Sum_probs=27.2
Q ss_pred EEEEeCCcchHHHHHHHHhcCCC--CceEEeec
Q 005360 666 GVLVCGPRKMRHEVAKICSSGLA--DNLHFESI 696 (700)
Q Consensus 666 gV~vcGP~~m~~~va~~c~~~~~--~~~hf~s~ 696 (700)
-||+|||+.|++++.+.+++.+. .++|+|.+
T Consensus 371 ~vylCGP~~m~~av~~~L~~~Gv~~~~I~~E~F 403 (405)
T TIGR01941 371 EFYMCGPPMMNAAVIKMLEDLGVERENILLDDF 403 (405)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCHHHEEEecc
Confidence 49999999999999999999776 56888876
No 116
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=85.51 E-value=0.47 Score=47.68 Aligned_cols=31 Identities=29% Similarity=0.414 Sum_probs=25.2
Q ss_pred eeEEEEeCCcchHHHHHHHHhcCCC--CceEEe
Q 005360 664 DVGVLVCGPRKMRHEVAKICSSGLA--DNLHFE 694 (700)
Q Consensus 664 ~vgV~vcGP~~m~~~va~~c~~~~~--~~~hf~ 694 (700)
+--|++|||+.|++++++...+.+. +++|+|
T Consensus 191 ~~~~yvCGp~~m~~~~~~~L~~~gv~~~~i~~e 223 (223)
T cd00322 191 GALVYICGPPAMAKAVREALVSLGVPEERIHTE 223 (223)
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCHHHcccC
Confidence 3459999999999999999998765 556654
No 117
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=85.02 E-value=0.7 Score=40.85 Aligned_cols=20 Identities=40% Similarity=0.693 Sum_probs=16.8
Q ss_pred CCeeEEEEeCCcchHHHHHH
Q 005360 662 GTDVGVLVCGPRKMRHEVAK 681 (700)
Q Consensus 662 ~~~vgV~vcGP~~m~~~va~ 681 (700)
..+.-|++|||+.|+++|++
T Consensus 90 ~~~~~v~iCGp~~m~~~v~~ 109 (109)
T PF00175_consen 90 PDDTHVYICGPPPMMKAVRK 109 (109)
T ss_dssp TTTEEEEEEEEHHHHHHHHH
T ss_pred CCCCEEEEECCHHHHHHhcC
Confidence 45566999999999999874
No 118
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=84.76 E-value=1.3 Score=45.47 Aligned_cols=47 Identities=19% Similarity=0.318 Sum_probs=31.8
Q ss_pred CCChHHHHhhcC-CCeeEEEEeCCcchHHHHHHHHhcCCC-CceEEeec
Q 005360 650 RPNLNKILLDVK-GTDVGVLVCGPRKMRHEVAKICSSGLA-DNLHFESI 696 (700)
Q Consensus 650 Rp~~~~i~~~~~-~~~vgV~vcGP~~m~~~va~~c~~~~~-~~~hf~s~ 696 (700)
+..+++++.+.. ...--||+|||+.|.+++.+..++.+. ..+|+|++
T Consensus 152 ~g~~~~~l~~~~~~~~~~vyicGp~~m~~~~~~~L~~~g~~~~i~~e~f 200 (233)
T cd06220 152 KGFVTDLLKELDLEEYDAIYVCGPEIMMYKVLEILDERGVRAQFSLERY 200 (233)
T ss_pred cceehHHHhhhcccCCCEEEEECCHHHHHHHHHHHHhcCCcEEEEeccc
Confidence 345556665542 121249999999999999999988666 44555554
No 119
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=83.95 E-value=0.66 Score=47.51 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=28.3
Q ss_pred CeeEEEEeCCcchHHHHHHHHhcCCC--CceEEeec
Q 005360 663 TDVGVLVCGPRKMRHEVAKICSSGLA--DNLHFESI 696 (700)
Q Consensus 663 ~~vgV~vcGP~~m~~~va~~c~~~~~--~~~hf~s~ 696 (700)
++.-|++|||+.|.+++.+...+.+. +++|.|++
T Consensus 205 ~~~~v~icGp~~mv~~v~~~l~~~G~~~~~i~~e~f 240 (241)
T cd06214 205 EFDEAFLCGPEPMMDAVEAALLELGVPAERIHRELF 240 (241)
T ss_pred cCcEEEEECCHHHHHHHHHHHHHcCCCHHHeecccc
Confidence 34559999999999999999998766 56888765
No 120
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=82.41 E-value=0.99 Score=45.63 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=27.0
Q ss_pred eEEEEeCCcchHHHHHHHHhcCCC--CceEEeec
Q 005360 665 VGVLVCGPRKMRHEVAKICSSGLA--DNLHFESI 696 (700)
Q Consensus 665 vgV~vcGP~~m~~~va~~c~~~~~--~~~hf~s~ 696 (700)
--|++|||+.|++++.+...+.+. +++|+|.+
T Consensus 188 ~~vyicGp~~m~~~~~~~L~~~Gv~~~~i~~e~f 221 (222)
T cd06194 188 DVVYLCGAPSMVNAVRRRAFLAGAPMKRIYADPF 221 (222)
T ss_pred CEEEEeCCHHHHHHHHHHHHHcCCCHHHeeeccc
Confidence 459999999999999999999777 56777654
No 121
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=79.81 E-value=1.6 Score=46.45 Aligned_cols=29 Identities=21% Similarity=0.146 Sum_probs=24.7
Q ss_pred EEEEeCCcchHHHHHHHHhcCCCC--ceEEe
Q 005360 666 GVLVCGPRKMRHEVAKICSSGLAD--NLHFE 694 (700)
Q Consensus 666 gV~vcGP~~m~~~va~~c~~~~~~--~~hf~ 694 (700)
-||+|||+.|++++++..++.+.+ ++|++
T Consensus 214 ~vyiCGP~~m~~~v~~~L~~~Gv~~~~i~~~ 244 (289)
T PRK08345 214 YAAICGPPVMYKFVFKELINRGYRPERIYVT 244 (289)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCHHHEEEE
Confidence 499999999999999999987774 57654
No 122
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=79.07 E-value=1.6 Score=44.79 Aligned_cols=31 Identities=6% Similarity=-0.056 Sum_probs=25.7
Q ss_pred eEEEEeCCcchHHHHHHHHhc-CCC--CceEEee
Q 005360 665 VGVLVCGPRKMRHEVAKICSS-GLA--DNLHFES 695 (700)
Q Consensus 665 vgV~vcGP~~m~~~va~~c~~-~~~--~~~hf~s 695 (700)
--|++|||+.|.+++.+.+++ .+. .++|++.
T Consensus 199 ~~vyicGp~~mv~~v~~~l~~~~g~~~~~i~~~~ 232 (235)
T cd06193 199 GYVWIAGEAGAVRALRRHLREERGVPRAQVYASG 232 (235)
T ss_pred eEEEEEccHHHHHHHHHHHHHccCCCHHHEEEEE
Confidence 359999999999999999986 344 6788875
No 123
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=74.87 E-value=2.9 Score=44.28 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=21.1
Q ss_pred EEEeCCcchHHHHHHHHhcCCCC
Q 005360 667 VLVCGPRKMRHEVAKICSSGLAD 689 (700)
Q Consensus 667 V~vcGP~~m~~~va~~c~~~~~~ 689 (700)
|++|||+.|+++|++.+++.+.+
T Consensus 184 vy~CGP~~M~~~v~~~l~~~gv~ 206 (281)
T PRK06222 184 VVAIGPVIMMKFVAELTKPYGIK 206 (281)
T ss_pred EEEECCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999987664
No 124
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=72.08 E-value=4.5 Score=42.01 Aligned_cols=29 Identities=28% Similarity=0.245 Sum_probs=24.2
Q ss_pred eEEEEeCCcchHHHHHHHHhcCCCC--ceEE
Q 005360 665 VGVLVCGPRKMRHEVAKICSSGLAD--NLHF 693 (700)
Q Consensus 665 vgV~vcGP~~m~~~va~~c~~~~~~--~~hf 693 (700)
--||+|||+.|.+++.+..++.+.+ ++|.
T Consensus 191 ~~vyicGp~~mv~~~~~~L~~~Gv~~~~i~~ 221 (253)
T cd06221 191 TVAIVCGPPIMMRFVAKELLKLGVPEEQIWV 221 (253)
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCCHHHEEE
Confidence 3599999999999999999997774 4553
No 125
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=69.23 E-value=5.9 Score=41.01 Aligned_cols=40 Identities=18% Similarity=0.293 Sum_probs=28.6
Q ss_pred CCCChHHHHhhcCCCeeEEEEeCCcchHHHHHHHHhcCCC
Q 005360 649 ERPNLNKILLDVKGTDVGVLVCGPRKMRHEVAKICSSGLA 688 (700)
Q Consensus 649 ~Rp~~~~i~~~~~~~~vgV~vcGP~~m~~~va~~c~~~~~ 688 (700)
.+..+++++.+...+.--|++|||+.|.+++.+..++.+.
T Consensus 166 ~~g~v~~~l~~~~~~~~~vyvCGp~~m~~~v~~~l~~~Gv 205 (250)
T PRK00054 166 FKGFVTDVLDELDSEYDAIYSCGPEIMMKKVVEILKEKKV 205 (250)
T ss_pred cccchhHhHhhhccCCCEEEEeCCHHHHHHHHHHHHHcCC
Confidence 3445666666553111139999999999999999998665
No 126
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=67.42 E-value=5.3 Score=42.84 Aligned_cols=19 Identities=16% Similarity=0.396 Sum_probs=15.9
Q ss_pred EEEeCCcchHHHHHHHHhc
Q 005360 667 VLVCGPRKMRHEVAKICSS 685 (700)
Q Consensus 667 V~vcGP~~m~~~va~~c~~ 685 (700)
||+|||+.|+++|.+.+.+
T Consensus 262 vYiCGp~~mv~~v~~~L~~ 280 (307)
T PLN03116 262 IYFCGLKGMMPGIQDTLKR 280 (307)
T ss_pred EEEeCCHHHHHHHHHHHHH
Confidence 9999999999877666555
No 127
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=67.34 E-value=3.7 Score=41.61 Aligned_cols=26 Identities=35% Similarity=0.386 Sum_probs=22.4
Q ss_pred CeeEEEEeCCcchHH-HHHHHHhcCCC
Q 005360 663 TDVGVLVCGPRKMRH-EVAKICSSGLA 688 (700)
Q Consensus 663 ~~vgV~vcGP~~m~~-~va~~c~~~~~ 688 (700)
++--|++|||+.|++ ++++.+++.+.
T Consensus 200 ~~~~~~icGp~~~~~~~~~~~l~~~G~ 226 (234)
T cd06183 200 EDTLVLVCGPPPMIEGAVKGLLKELGY 226 (234)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHcCC
Confidence 345699999999999 99999998665
No 128
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=65.99 E-value=6.3 Score=41.05 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=29.0
Q ss_pred cCCCCh-HHHHhhcC-CCeeEEEEeCCcchHHHHHHHHhcCC
Q 005360 648 GERPNL-NKILLDVK-GTDVGVLVCGPRKMRHEVAKICSSGL 687 (700)
Q Consensus 648 G~Rp~~-~~i~~~~~-~~~vgV~vcGP~~m~~~va~~c~~~~ 687 (700)
|..... .+++.+.. .+.--|++|||+.|.+.|++...+.+
T Consensus 174 G~~G~v~~~~~~~~~~~~~~~v~~cGp~~M~~~v~~~~~~~g 215 (252)
T COG0543 174 GRKGFVTTDVLKELLDLEVDDVYICGPPAMVKAVREKLKEYG 215 (252)
T ss_pred ccCcceeHHHHhhhccccCCEEEEECCHHHHHHHHHHHHhcC
Confidence 444455 56666642 22234999999999999999999977
No 129
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=64.62 E-value=6.1 Score=41.84 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=18.2
Q ss_pred EEEEeCCcchHHHHHHHHhc
Q 005360 666 GVLVCGPRKMRHEVAKICSS 685 (700)
Q Consensus 666 gV~vcGP~~m~~~va~~c~~ 685 (700)
-||+|||+.|.++|.+.+++
T Consensus 241 ~vYiCGp~~m~~~v~~~L~~ 260 (286)
T cd06208 241 HVYICGLKGMEPGVDDALTS 260 (286)
T ss_pred EEEEeCCchHHHHHHHHHHH
Confidence 39999999999999988877
No 130
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=64.44 E-value=4.8 Score=41.68 Aligned_cols=21 Identities=19% Similarity=0.507 Sum_probs=18.9
Q ss_pred eEEEEeCCcchHHHHHHHHhc
Q 005360 665 VGVLVCGPRKMRHEVAKICSS 685 (700)
Q Consensus 665 vgV~vcGP~~m~~~va~~c~~ 685 (700)
--|++|||+.|++++.+.+..
T Consensus 207 ~~vy~CGp~~Mv~~~~~~l~~ 227 (248)
T PRK10926 207 SHVMLCGNPQMVRDTQQLLKE 227 (248)
T ss_pred CEEEEECCHHHHHHHHHHHHH
Confidence 349999999999999999976
No 131
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=61.23 E-value=5.5 Score=42.36 Aligned_cols=20 Identities=35% Similarity=0.710 Sum_probs=17.4
Q ss_pred EEEEeCCcchHHHHHHHHhc
Q 005360 666 GVLVCGPRKMRHEVAKICSS 685 (700)
Q Consensus 666 gV~vcGP~~m~~~va~~c~~ 685 (700)
-|++|||+.|+++|.+.+.+
T Consensus 247 ~vyiCGp~~M~~~v~~~L~~ 266 (289)
T cd06201 247 QIMVCGSRAMAQGVAAVLEE 266 (289)
T ss_pred EEEEECCHHHHHHHHHHHHH
Confidence 39999999999999887765
No 132
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=60.46 E-value=6.7 Score=40.54 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=20.7
Q ss_pred EEEeCCcchHHHHHHHHhcCCCC
Q 005360 667 VLVCGPRKMRHEVAKICSSGLAD 689 (700)
Q Consensus 667 V~vcGP~~m~~~va~~c~~~~~~ 689 (700)
|++|||+.|.+++.+..++.+.+
T Consensus 183 vyiCGP~~m~~~~~~~l~~~Gv~ 205 (248)
T cd06219 183 VIAIGPPIMMKAVSELTRPYGIP 205 (248)
T ss_pred EEEECCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999886654
No 133
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=58.15 E-value=7.3 Score=41.66 Aligned_cols=31 Identities=23% Similarity=0.179 Sum_probs=22.3
Q ss_pred eEEEEeCCcchHH-HHHHHHhcCCCCceEEee
Q 005360 665 VGVLVCGPRKMRH-EVAKICSSGLADNLHFES 695 (700)
Q Consensus 665 vgV~vcGP~~m~~-~va~~c~~~~~~~~hf~s 695 (700)
--|++|||+.|++ ++.+.-++.+.+.=++|+
T Consensus 268 ~~vyiCGp~~mv~~~~~~~L~~~G~~~~~i~~ 299 (300)
T PTZ00319 268 VMALMCGPPPMLQMAVKPNLEKIGYTADNMFT 299 (300)
T ss_pred eEEEEECCHHHHHHHHHHHHHHcCCCHHHEEE
Confidence 3599999999998 567677777765444443
No 134
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=57.05 E-value=7.2 Score=40.94 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=17.2
Q ss_pred EEEEeCCcc-hHHHHHHHHhc
Q 005360 666 GVLVCGPRK-MRHEVAKICSS 685 (700)
Q Consensus 666 gV~vcGP~~-m~~~va~~c~~ 685 (700)
-|++|||+. |.++|.+.+.+
T Consensus 216 ~vyvCGp~~~m~~~v~~~L~~ 236 (267)
T cd06182 216 HIYVCGDAKSMAKDVEDALVK 236 (267)
T ss_pred EEEEECCcccchHHHHHHHHH
Confidence 599999999 98888877766
No 135
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=56.98 E-value=7.8 Score=40.51 Aligned_cols=25 Identities=20% Similarity=0.119 Sum_probs=22.0
Q ss_pred eEEEEeCCcchHHHHHHHHhcCCCC
Q 005360 665 VGVLVCGPRKMRHEVAKICSSGLAD 689 (700)
Q Consensus 665 vgV~vcGP~~m~~~va~~c~~~~~~ 689 (700)
--|++|||++|.+++.+..++.+.+
T Consensus 191 ~~v~lCGp~~mv~~~~~~L~~~Gv~ 215 (261)
T TIGR02911 191 VQAIVVGPPIMMKFTVQELLKKGIK 215 (261)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCC
Confidence 3599999999999999999987764
No 136
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=56.78 E-value=7.5 Score=40.17 Aligned_cols=19 Identities=26% Similarity=0.501 Sum_probs=16.9
Q ss_pred EEEeCCc-chHHHHHHHHhc
Q 005360 667 VLVCGPR-KMRHEVAKICSS 685 (700)
Q Consensus 667 V~vcGP~-~m~~~va~~c~~ 685 (700)
||+|||+ .|.++|.+...+
T Consensus 205 vy~CGp~~~m~~~v~~~l~~ 224 (245)
T cd06200 205 IYVCGSLQGMAPGVDAVLDE 224 (245)
T ss_pred EEEECCchhhhHHHHHHHHH
Confidence 9999999 999999887764
No 137
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=56.35 E-value=10 Score=40.22 Aligned_cols=36 Identities=22% Similarity=0.204 Sum_probs=23.0
Q ss_pred CCChHHHHhhc-CC--CeeEEEEeCCcchHHHHHHHHhc
Q 005360 650 RPNLNKILLDV-KG--TDVGVLVCGPRKMRHEVAKICSS 685 (700)
Q Consensus 650 Rp~~~~i~~~~-~~--~~vgV~vcGP~~m~~~va~~c~~ 685 (700)
|.+...|-+-. .+ .++-|++|||+.|.+.++...-+
T Consensus 236 ~It~~~i~~~l~~~~~~~~~~liCGPp~m~~~~~~~~le 274 (286)
T KOG0534|consen 236 FITKDLIKEHLPPPKEGETLVLICGPPPMINGAAQGNLE 274 (286)
T ss_pred ccCHHHHHhhCCCCCCCCeEEEEECCHHHHhHHHHHHHH
Confidence 66655554333 22 25789999999999865544433
No 138
>COG2717 Predicted membrane protein [Function unknown]
Probab=54.60 E-value=1.6e+02 Score=29.80 Aligned_cols=59 Identities=20% Similarity=0.036 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 005360 149 WQAKFRSVSLRLGYIGNTCWAFLFFPVTRGSSILPLVGLTSESSIKYHIWLGHLSNALFALHAVG 213 (700)
Q Consensus 149 ~~~~l~~va~R~G~ia~~~l~ll~l~~~Rnn~l~~ltG~~~e~~~~~Hrwlgr~~~~~~~iH~i~ 213 (700)
+.+.......-.|++|...|..+.+ +-++...+-.| .+-.++||| ++.+.+++.+|-..
T Consensus 108 ~~d~~~rpyitiG~iaflll~pLal--TS~k~~~rrlG---~rW~~LHrL-vYl~~~L~~lH~~~ 166 (209)
T COG2717 108 GLDLLKRPYITIGMIAFLLLIPLAL--TSFKWVRRRLG---KRWKKLHRL-VYLALILGALHYLW 166 (209)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHH--HhhHHHHHHHH---HHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3344444555567777766655554 66778888888 688899996 68899999999654
No 139
>PRK05802 hypothetical protein; Provisional
Probab=53.97 E-value=11 Score=40.67 Aligned_cols=32 Identities=9% Similarity=0.154 Sum_probs=23.6
Q ss_pred ChHHHHhhcCCCeeEEEEeCCcchHHHHHHHHhc
Q 005360 652 NLNKILLDVKGTDVGVLVCGPRKMRHEVAKICSS 685 (700)
Q Consensus 652 ~~~~i~~~~~~~~vgV~vcGP~~m~~~va~~c~~ 685 (700)
.+++++.+.+. ++ |++|||+.|+++|++...+
T Consensus 244 ~v~~~l~~~~~-~~-vy~CGP~~M~k~v~~~l~~ 275 (320)
T PRK05802 244 ILKEIIKKEDI-NL-IHCGGSDILHYKIIEYLDK 275 (320)
T ss_pred hHHHHhcCCCC-CE-EEEECCHHHHHHHHHHHhh
Confidence 34555543322 33 9999999999999999886
No 140
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=52.96 E-value=61 Score=31.30 Aligned_cols=31 Identities=26% Similarity=0.107 Sum_probs=24.8
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005360 187 LTSESSIKYHIWLGHLSNALFALHAVGFLIY 217 (700)
Q Consensus 187 ~~~e~~~~~Hrwlgr~~~~~~~iH~i~~~~~ 217 (700)
-..+....+|+++|.+.++...++.+.....
T Consensus 41 ~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~ 71 (188)
T PF00033_consen 41 PGRQLLRWLHFSLGIVFLALFLLRILWRLFS 71 (188)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456788899999999999999888765543
No 141
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=52.82 E-value=14 Score=37.90 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=19.8
Q ss_pred EEEEeCCcchHHHHHHHHhcCC
Q 005360 666 GVLVCGPRKMRHEVAKICSSGL 687 (700)
Q Consensus 666 gV~vcGP~~m~~~va~~c~~~~ 687 (700)
-|++|||+.|.+++.+..++.+
T Consensus 180 ~v~icGp~~mv~~~~~~l~~~g 201 (243)
T cd06192 180 RIIVAGSDIMMKAVVEALDEWL 201 (243)
T ss_pred EEEEECCHHHHHHHHHHHHhhc
Confidence 4999999999999999998854
No 142
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=51.57 E-value=12 Score=46.62 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=23.4
Q ss_pred EEEeCCcchHHHHHHHHhcCCCCc-eEEe
Q 005360 667 VLVCGPRKMRHEVAKICSSGLADN-LHFE 694 (700)
Q Consensus 667 V~vcGP~~m~~~va~~c~~~~~~~-~hf~ 694 (700)
||+|||+.|+++|++.++..+.+. +..|
T Consensus 850 Vy~CGP~~Mmkav~~~l~~~Gv~~~vSlE 878 (944)
T PRK12779 850 VIAIGPPLMMRAVSDLTKPYGVKTVASLN 878 (944)
T ss_pred EEEECCHHHHHHHHHHHHHcCCCeEEeec
Confidence 999999999999999999877653 4444
No 143
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=50.90 E-value=14 Score=41.37 Aligned_cols=19 Identities=21% Similarity=0.760 Sum_probs=14.2
Q ss_pred EEEeCCcch----HHHHHHHHhc
Q 005360 667 VLVCGPRKM----RHEVAKICSS 685 (700)
Q Consensus 667 V~vcGP~~m----~~~va~~c~~ 685 (700)
||+|||+.| ++.+++++++
T Consensus 366 vYiCGp~~M~~~v~~~L~~~~~~ 388 (411)
T TIGR03224 366 IYICGLKGMEEGVLDAFRDVCAT 388 (411)
T ss_pred EEEECCHHHHHHHHHHHHHHHHH
Confidence 999999999 5555555554
No 144
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=48.93 E-value=12 Score=41.62 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=22.7
Q ss_pred CCeEEEEEeCCCCcccCCCcEEEEEeCC
Q 005360 324 CGVVELNFSKSPGLYYNPTSILFVNVPS 351 (700)
Q Consensus 324 ~~~~~l~~~~~~~~~~~pGq~v~L~~p~ 351 (700)
.++..+++..+.+..|+||+++.|..+.
T Consensus 15 ~~~~~~~~~~~~~~~y~~GD~l~v~P~N 42 (384)
T cd06206 15 PSKRHLELRLPDGMTYRAGDYLAVLPRN 42 (384)
T ss_pred ccEEEEEEECCCCCccCCCCEEEEECCC
Confidence 4677788887667889999999998764
No 145
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=48.58 E-value=9 Score=41.57 Aligned_cols=17 Identities=29% Similarity=0.714 Sum_probs=15.5
Q ss_pred EEEEeCCcchHHHHHHH
Q 005360 666 GVLVCGPRKMRHEVAKI 682 (700)
Q Consensus 666 gV~vcGP~~m~~~va~~ 682 (700)
-||+|||+.|+++||..
T Consensus 265 ~vylCGPp~Mm~av~~~ 281 (325)
T PTZ00274 265 IIMLCGPDQLLNHVAGT 281 (325)
T ss_pred EEEEeCCHHHHHHhcCC
Confidence 39999999999999877
No 146
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=48.35 E-value=13 Score=38.84 Aligned_cols=25 Identities=20% Similarity=0.102 Sum_probs=21.8
Q ss_pred eEEEEeCCcchHHHHHHHHhcCCCC
Q 005360 665 VGVLVCGPRKMRHEVAKICSSGLAD 689 (700)
Q Consensus 665 vgV~vcGP~~m~~~va~~c~~~~~~ 689 (700)
--||+|||+.|++++.+.-++.+.+
T Consensus 193 ~~vylCGp~~mv~~~~~~L~~~Gv~ 217 (263)
T PRK08221 193 MQVIVVGPPIMMKFTVLEFLKRGIK 217 (263)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCC
Confidence 3499999999999999999887664
No 147
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=48.11 E-value=17 Score=40.15 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=16.6
Q ss_pred EEEEeCCcchHHHHHHHHhc
Q 005360 666 GVLVCGPRKMRHEVAKICSS 685 (700)
Q Consensus 666 gV~vcGP~~m~~~va~~c~~ 685 (700)
-||+|||++|.++|.++..+
T Consensus 321 ~vYiCGp~~M~~~V~~~l~~ 340 (367)
T PLN03115 321 YVYMCGLKGMEKGIDDIMVS 340 (367)
T ss_pred EEEEeCCHHHHHHHHHHHHH
Confidence 49999999998888776655
No 148
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=47.85 E-value=1.4e+02 Score=28.67 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 005360 192 SIKYHIWLGHLSNALFALHAVGF 214 (700)
Q Consensus 192 ~~~~Hrwlgr~~~~~~~iH~i~~ 214 (700)
....|.++|.+.....+++.+..
T Consensus 42 ~~~~H~~~G~~~~~~~~~~l~~~ 64 (182)
T PF01292_consen 42 VRNWHVIAGLLLFALLIFRLLWR 64 (182)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Confidence 36689999999999998877655
No 149
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=44.48 E-value=32 Score=31.78 Aligned_cols=22 Identities=18% Similarity=0.224 Sum_probs=16.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHH
Q 005360 189 SESSIKYHIWLGHLSNALFALH 210 (700)
Q Consensus 189 ~e~~~~~Hrwlgr~~~~~~~iH 210 (700)
...+..+|||+|+.+++++.+-
T Consensus 105 r~~~~~~H~~~G~~~~~la~~t 126 (131)
T cd08554 105 RSSLLPFHRFFGLAIFVLAIAT 126 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888777654
No 150
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=44.08 E-value=1.1e+02 Score=28.18 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=16.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHH
Q 005360 189 SESSIKYHIWLGHLSNALFALH 210 (700)
Q Consensus 189 ~e~~~~~Hrwlgr~~~~~~~iH 210 (700)
....+++||++|+++++++.+=
T Consensus 104 r~~~~~~H~~~G~~~~~l~~~~ 125 (137)
T PF03188_consen 104 RPIWNKWHRWLGYLIYVLAIAT 125 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778999999888887643
No 151
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=43.86 E-value=20 Score=43.43 Aligned_cols=23 Identities=22% Similarity=0.141 Sum_probs=21.0
Q ss_pred EEEeCCcchHHHHHHHHhcCCCC
Q 005360 667 VLVCGPRKMRHEVAKICSSGLAD 689 (700)
Q Consensus 667 V~vcGP~~m~~~va~~c~~~~~~ 689 (700)
||+|||+.|+++|++.++..+.+
T Consensus 184 vy~CGP~~M~~~v~~~l~~~gv~ 206 (752)
T PRK12778 184 VFAIGPAIMMKFVCLLTKKYGIP 206 (752)
T ss_pred EEEECCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999887664
No 152
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=39.52 E-value=18 Score=40.00 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=21.9
Q ss_pred CCeEEEEEeC-CCCcccCCCcEEEEEeCC
Q 005360 324 CGVVELNFSK-SPGLYYNPTSILFVNVPS 351 (700)
Q Consensus 324 ~~~~~l~~~~-~~~~~~~pGq~v~L~~p~ 351 (700)
.++..+++.. +++..|+||+|+.|..+.
T Consensus 15 ~~~~hl~l~~~~~~~~y~~GD~l~v~p~N 43 (382)
T cd06207 15 RSTRHIEFDLGGSGLSYETGDNLGIYPEN 43 (382)
T ss_pred ceEEEEEEecCCCCCccCCCCEEEEEcCC
Confidence 3577888885 357889999999998765
No 153
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=37.66 E-value=2.4e+02 Score=27.76 Aligned_cols=52 Identities=17% Similarity=-0.043 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHh-cCCcccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 005360 159 RLGYIGNTCWAFLFFPV-TRGSSILPLVGLTSESSIKYHIWLGHLSNALFALHAVGF 214 (700)
Q Consensus 159 R~G~ia~~~l~ll~l~~-~Rnn~l~~ltG~~~e~~~~~Hrwlgr~~~~~~~iH~i~~ 214 (700)
..|++...++.+..+.+ .|...... .....+.+|+|+|+++++++.+-...=
T Consensus 107 ~lGl~~~~l~~lQ~~~G~~~~~~~~~----~R~~~~~~H~~~G~~~~~l~~v~i~~G 159 (191)
T cd08760 107 ILGIIVLALAILQPLLGLLRPHPGSK----KRSIWNWAHRWLGRAALILAIVNIFLG 159 (191)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCCCC----cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666555554444332 34444332 223458899999999999999887653
No 154
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=37.29 E-value=22 Score=39.98 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=26.0
Q ss_pred EEEEEEEec----CCeEEEEEeCCC-CcccCCCcEEEEEeCC
Q 005360 315 RLLSARALP----CGVVELNFSKSP-GLYYNPTSILFVNVPS 351 (700)
Q Consensus 315 ~vvs~~~l~----~~~~~l~~~~~~-~~~~~pGq~v~L~~p~ 351 (700)
++++.+.++ .++..+++..++ +..|+||+++.|..+.
T Consensus 9 ~v~~~~~lt~~~~~~~~~~~ld~~~~~~~Y~~GD~l~I~p~N 50 (416)
T cd06204 9 PVAVSRELFTGSDRSCLHIEFDISGSGIRYQTGDHLAVWPTN 50 (416)
T ss_pred EEEEEeeccCCCCccEEEEEEeCCCCCCcccCCCEEEEEcCC
Confidence 455555444 357778887543 6789999999998765
No 155
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=35.59 E-value=45 Score=23.92 Aligned_cols=19 Identities=32% Similarity=0.506 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 005360 191 SSIKYHIWLGHLSNALFAL 209 (700)
Q Consensus 191 ~~~~~Hrwlgr~~~~~~~i 209 (700)
.+...|+|+|.++-++..+
T Consensus 3 ~~~~~H~W~Gl~~g~~l~~ 21 (37)
T PF13706_consen 3 ILRKLHRWLGLILGLLLFV 21 (37)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3567999999987766654
No 156
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=35.50 E-value=57 Score=26.14 Aligned_cols=31 Identities=32% Similarity=0.469 Sum_probs=27.3
Q ss_pred cccCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 005360 183 PLVGLTSESSIKYHIWLGHLSNALFALHAVG 213 (700)
Q Consensus 183 ~ltG~~~e~~~~~Hrwlgr~~~~~~~iH~i~ 213 (700)
.+.|.+.+.....|.|.|.+++++..+|...
T Consensus 32 ~~~~~~~~~~~~iH~~~g~~~~~l~~~Hl~l 62 (64)
T PF14358_consen 32 PFLGLNKHFWRNIHLWAGYLFLILIILHLGL 62 (64)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777889999999999999999999764
No 157
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=35.08 E-value=26 Score=39.27 Aligned_cols=29 Identities=10% Similarity=0.143 Sum_probs=21.9
Q ss_pred CCeEEEEEeCC--CCcccCCCcEEEEEeCCC
Q 005360 324 CGVVELNFSKS--PGLYYNPTSILFVNVPSI 352 (700)
Q Consensus 324 ~~~~~l~~~~~--~~~~~~pGq~v~L~~p~~ 352 (700)
.++..+++... ++..|+||+|+.|..+..
T Consensus 15 ~~~~~i~ld~~~~~~~~Y~~GD~l~V~p~N~ 45 (406)
T cd06202 15 RSTILVKLDTNGAQELHYQPGDHVGIFPANR 45 (406)
T ss_pred ceEEEEEEECCCCCCCCCCCCCEEEEEeCCC
Confidence 35777777754 468899999999987653
No 158
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=35.00 E-value=76 Score=28.35 Aligned_cols=45 Identities=22% Similarity=0.399 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhc-----chhHhhhchhHHHHHHHHHH-HHHHHHHHhh
Q 005360 240 GVIAIAIATVIWATS-----LPRFRRKMFELFFYTHHLYI-LYIIFYVLHV 284 (700)
Q Consensus 240 G~ia~~~l~~l~~~S-----l~~iRr~~YE~F~~~H~l~~-~~lv~~~~H~ 284 (700)
|.+|++.+.+..+.+ +...++..+|.....|...+ +.++....|.
T Consensus 2 G~~a~~~l~~~~~l~~R~~~l~~~~~~~~~~~~~~Hr~lg~~~~~~~~~H~ 52 (125)
T PF01794_consen 2 GILAFALLPLVFLLGLRNSPLARLTGISFDRLLRFHRWLGRLAFFLALLHG 52 (125)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666555544 22345668999999999876 5677778887
No 159
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=34.56 E-value=55 Score=30.11 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 005360 191 SSIKYHIWLGHLSNALFAL 209 (700)
Q Consensus 191 ~~~~~Hrwlgr~~~~~~~i 209 (700)
..+.+|||+|+.+++++.+
T Consensus 105 ~~~~~H~~~G~~~~~la~~ 123 (129)
T smart00665 105 YLNPYHRFVGLAAFILAIV 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555777777777776653
No 160
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=34.08 E-value=25 Score=44.85 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=23.0
Q ss_pred eeEEEEeCCcchHHHHHHHHhcCCCCc
Q 005360 664 DVGVLVCGPRKMRHEVAKICSSGLADN 690 (700)
Q Consensus 664 ~vgV~vcGP~~m~~~va~~c~~~~~~~ 690 (700)
+--||+|||+.|+++|.+..++.+.+.
T Consensus 1129 ~~~vyiCGP~~mv~~v~~~L~~~G~~~ 1155 (1167)
T PTZ00306 1129 DLLVAICGPPVMQRAVKADLLALGYNM 1155 (1167)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCCH
Confidence 345999999999999999999876644
No 161
>PLN02252 nitrate reductase [NADPH]
Probab=33.63 E-value=42 Score=41.51 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=19.5
Q ss_pred eeEEEEeCCcchHHH-HHHHHhcCCC
Q 005360 664 DVGVLVCGPRKMRHE-VAKICSSGLA 688 (700)
Q Consensus 664 ~vgV~vcGP~~m~~~-va~~c~~~~~ 688 (700)
+--||+|||+.|.+. +...+.+.+.
T Consensus 855 ~~~vyiCGPp~Mi~~av~~~L~~~G~ 880 (888)
T PLN02252 855 ETLALMCGPPPMIEFACQPNLEKMGY 880 (888)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHcCC
Confidence 345999999999985 6677777655
No 162
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=33.24 E-value=26 Score=38.44 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=22.2
Q ss_pred CCeEEEEEeCCC-CcccCCCcEEEEEeCCC
Q 005360 324 CGVVELNFSKSP-GLYYNPTSILFVNVPSI 352 (700)
Q Consensus 324 ~~~~~l~~~~~~-~~~~~pGq~v~L~~p~~ 352 (700)
.++..+++..+. +..|+||+++.|..+..
T Consensus 15 ~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~ 44 (360)
T cd06199 15 KETRHIELDLEGSGLSYEPGDALGVYPTND 44 (360)
T ss_pred ccEEEEEEeCCCCCCcccCCCEEEEEcCCC
Confidence 357788887543 67899999999987653
No 163
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=29.82 E-value=66 Score=22.47 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 005360 190 ESSIKYHIWLGHLSNALFALHA 211 (700)
Q Consensus 190 e~~~~~Hrwlgr~~~~~~~iH~ 211 (700)
.....+|+|+|..+.+..++=+
T Consensus 3 ~~~~~~H~~~g~~~~~~ll~~~ 24 (34)
T PF13172_consen 3 KFWRKIHRWLGLIAAIFLLLLA 24 (34)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789998887776665433
No 164
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=28.97 E-value=57 Score=33.05 Aligned_cols=27 Identities=19% Similarity=0.232 Sum_probs=18.4
Q ss_pred CceeeeeEeecCCCCCCCeEEEEEEeC
Q 005360 354 KLQWHPFTVTSNCNMEQDKLSILVKTE 380 (700)
Q Consensus 354 ~~q~HPFTIas~p~~~~~~l~l~IK~~ 380 (700)
..+.|.|||+|+|...++++++.++..
T Consensus 176 ~l~PR~YSIsSS~~~~p~~v~ltv~vv 202 (219)
T PF00667_consen 176 PLQPRYYSISSSPLVHPNKVHLTVSVV 202 (219)
T ss_dssp B---EEEEB-S-TTTSTTEEEEEEEE-
T ss_pred CCCCcceeecccccCCCCEEEEEEEEE
Confidence 568899999999977788999998873
No 165
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=27.90 E-value=64 Score=40.60 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=20.0
Q ss_pred EEEeCCcchHHHHHHHHhcCCC
Q 005360 667 VLVCGPRKMRHEVAKICSSGLA 688 (700)
Q Consensus 667 V~vcGP~~m~~~va~~c~~~~~ 688 (700)
|++|||+.|++.|++.++..+.
T Consensus 184 vy~CGP~~Mm~av~~~~~~~gi 205 (1006)
T PRK12775 184 VVAIGPLPMMNACVETTRPFGV 205 (1006)
T ss_pred EEEECCHHHHHHHHHHHHHCCC
Confidence 9999999999999999987654
No 166
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=27.74 E-value=1.1e+02 Score=20.51 Aligned_cols=18 Identities=17% Similarity=0.508 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005360 193 IKYHIWLGHLSNALFALH 210 (700)
Q Consensus 193 ~~~Hrwlgr~~~~~~~iH 210 (700)
+.+|||++-++.++.++=
T Consensus 2 ~~LH~w~~~i~al~~lv~ 19 (27)
T PF03929_consen 2 NDLHKWFGDIFALFMLVF 19 (27)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 568888877666555543
No 167
>PF10067 DUF2306: Predicted membrane protein (DUF2306); InterPro: IPR018750 Members of this family of hypothetical bacterial proteins have no known function.
Probab=24.97 E-value=2.5e+02 Score=24.86 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 005360 191 SSIKYHIWLGHLSNALFALHAVG 213 (700)
Q Consensus 191 ~~~~~Hrwlgr~~~~~~~iH~i~ 213 (700)
+...+||++||+-+...++=+++
T Consensus 4 k~~~~HR~lGrvyv~~~~~~a~s 26 (103)
T PF10067_consen 4 KGPRLHRWLGRVYVAAMLISALS 26 (103)
T ss_pred CcccHHHhhhHHHHHHHHHHHHH
Confidence 44579999999988888755444
No 168
>PLN02631 ferric-chelate reductase
Probab=24.83 E-value=4.3e+02 Score=31.95 Aligned_cols=51 Identities=8% Similarity=0.002 Sum_probs=38.7
Q ss_pred ccchhHHHHHHHHHHHHHHhc-----chhHhhhchhHHHHHHHHHH-HHHHHHHHhh
Q 005360 234 YVSNVAGVIAIAIATVIWATS-----LPRFRRKMFELFFYTHHLYI-LYIIFYVLHV 284 (700)
Q Consensus 234 ~~~~~~G~ia~~~l~~l~~~S-----l~~iRr~~YE~F~~~H~l~~-~~lv~~~~H~ 284 (700)
.....+|+++..++.++++.+ +.++=...||.|...|+..+ +.++....|.
T Consensus 151 ~ig~RtGila~~~lpll~L~a~Rnn~L~~ltG~s~e~~i~yHRWlGri~~~la~iH~ 207 (699)
T PLN02631 151 AFGLRIGYVGHICWAFLFFPVTRASTILPLVGLTSESSIKYHIWLGHVSNFLFLVHT 207 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445689999999988888765 23333457999999999876 6677778886
No 169
>KOG4452 consensus Predicted membrane protein [Function unknown]
Probab=24.38 E-value=71 Score=26.11 Aligned_cols=48 Identities=21% Similarity=0.291 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhccchhHHhhhhhhhhccccceeecccchhhHHHHHH
Q 005360 13 FAVFLGWLLVWALIPTKVYKNTWTPKLNNKLNSTYFREQGTNLLLFSFP 61 (700)
Q Consensus 13 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~y~~~ 61 (700)
=..|..|.++.-+-.|+--++.++.-+-+...|.+.| .|..++.-|..
T Consensus 29 G~fftAwFf~~~VtStKy~r~l~KELlIsl~aSvFlG-FG~vFLLLwVG 76 (79)
T KOG4452|consen 29 GLFFTAWFFMIQVTSTKYNRNLLKELLISLTASVFLG-FGSVFLLLWVG 76 (79)
T ss_pred HHHHHHHHHheeEecchhhHHHHHHHHHHHHHHHHHh-hhHHHHHHHHh
Confidence 3467789888888776655566777776666666665 45666666643
No 170
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=22.51 E-value=53 Score=38.80 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=27.0
Q ss_pred eEEEEEEEec-----CCeEEEEEeC-CCCcccCCCcEEEEEeCC
Q 005360 314 ARLLSARALP-----CGVVELNFSK-SPGLYYNPTSILFVNVPS 351 (700)
Q Consensus 314 ~~vvs~~~l~-----~~~~~l~~~~-~~~~~~~pGq~v~L~~p~ 351 (700)
.++.+.+.++ .++..+++.. +.+..|+||+++-|....
T Consensus 237 a~v~~n~~lt~~~~~k~~~hiel~l~~~~~~Y~~GD~l~V~P~N 280 (597)
T TIGR01931 237 AEVLENQKITGRNSKKDVRHIEIDLEGSGLHYEPGDALGVWYKN 280 (597)
T ss_pred EEEEeeEecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEeCC
Confidence 4566656554 2577788875 346789999999998764
No 171
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=22.49 E-value=3.7e+02 Score=25.58 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=9.4
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 005360 191 SSIKYHIWLGHLSNALFA 208 (700)
Q Consensus 191 ~~~~~Hrwlgr~~~~~~~ 208 (700)
+...+|++.|+.++++++
T Consensus 112 ~~~p~H~~~G~~~~~la~ 129 (144)
T cd08766 112 ALLPWHVFLGLAIYYLAI 129 (144)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555555544
No 172
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=22.32 E-value=3.5e+02 Score=26.08 Aligned_cols=22 Identities=9% Similarity=0.163 Sum_probs=14.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHH
Q 005360 189 SESSIKYHIWLGHLSNALFALH 210 (700)
Q Consensus 189 ~e~~~~~Hrwlgr~~~~~~~iH 210 (700)
..+...+||+.|..++++++.=
T Consensus 117 r~~~~p~H~~~G~~i~~Lai~t 138 (153)
T cd08765 117 RAALMPLHVYSGLFIFGTVIAT 138 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777776666543
No 173
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=21.02 E-value=65 Score=35.94 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=21.5
Q ss_pred CCeEEEEEeC-CCCcccCCCcEEEEEeCC
Q 005360 324 CGVVELNFSK-SPGLYYNPTSILFVNVPS 351 (700)
Q Consensus 324 ~~~~~l~~~~-~~~~~~~pGq~v~L~~p~ 351 (700)
.++.+++++. +++..|+||+|+.|..+.
T Consensus 15 ~~~~~i~~~~~~~~~~y~~GD~l~V~p~N 43 (398)
T cd06203 15 KTVVDLTLDLSPTGFDYQPGDTIGILPPN 43 (398)
T ss_pred ceEEEEEEecCCCCCcCCCCCEEEEeCCC
Confidence 4677788874 245789999999998764
No 174
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=20.66 E-value=1.2e+02 Score=33.07 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=21.5
Q ss_pred CeEEEEEcCCC--hhhHHHHHHHHHH
Q 005360 417 ESLVMVSGGSG--ISPFISIVRELIF 440 (700)
Q Consensus 417 ~~vvlIAGG~G--ITp~lsil~~l~~ 440 (700)
+++++.||||| |.|.+++++++.+
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~ 27 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKE 27 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHh
Confidence 46999999999 9999999999864
Done!