BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005361
(700 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 97/321 (30%), Positives = 152/321 (47%), Gaps = 41/321 (12%)
Query: 86 DCSSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSP-QWASLQLVEL 144
DCS+ + + + L+G +S LK L++S N G P SLQ L
Sbjct: 218 DCSA----LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQY--L 271
Query: 145 SVMGNRLSGPFPKVLTNIT-TLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGEL 203
S+ N+ +G P L+ TL L + GN F G++PP L+ L LSSN+F+GEL
Sbjct: 272 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 331
Query: 204 PAE-LTKLTNLNDLRISDNNFSGKIPEFIGKWKK-------------------------- 236
P + L K+ L L +S N FSG++PE +
Sbjct: 332 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 391
Query: 237 -IQKLHIQGSSLEGPIPASISALTSLTDLRIS--DLKGS-ESAFPKLDKMNLKTLILTKC 292
+Q+L++Q + G IP ++S + L L +S L G+ S+ L K L+ L L
Sbjct: 392 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK--LRDLKLWLN 449
Query: 293 LIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFN 352
++ GEIP + + L+ + L FN+LTG IP+ N++ L+ N+LTG +PK+I
Sbjct: 450 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 509
Query: 353 SNKNVDISLNNFTWESSDPIE 373
+ L+N ++ + P E
Sbjct: 510 LENLAILKLSNNSFSGNIPAE 530
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 88/303 (29%), Positives = 142/303 (46%), Gaps = 26/303 (8%)
Query: 89 SATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMG 148
S +V++ L L+GT+P+ L L L+ L L N L G + ++ +E ++
Sbjct: 412 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 471
Query: 149 -NRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAEL 207
N L+G P L+N T L +S+ N TG IP I +L NL L LS+NSF+G +PAEL
Sbjct: 472 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 531
Query: 208 TKLTNLNDLRISDNNFSGKIP------------EFIGKWKKI--------QKLHIQGSSL 247
+L L ++ N F+G IP FI + + ++ H G+ L
Sbjct: 532 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 591
Query: 248 E--GPIPASISALTSLTDLRISDLKGSESAFPKLDKM-NLKTLILTKCLIHGEIPDYIGD 304
E G ++ L++ I+ P D ++ L ++ ++ G IP IG
Sbjct: 592 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 651
Query: 305 MTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYI--FNSNKNVDISLN 362
M L ++L N+++G IP L N + L+ NKL G +P+ + +D+S N
Sbjct: 652 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 711
Query: 363 NFT 365
N +
Sbjct: 712 NLS 714
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 97/174 (55%), Gaps = 3/174 (1%)
Query: 91 TCHVVTIALKAQNLTGTLPTELSK--LRYLKQLDLSRNCLTGSFSPQWASL-QLVELSVM 147
+ ++T+ L + N +G + L + L++L L N TG P ++ +LV L +
Sbjct: 364 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 423
Query: 148 GNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAEL 207
N LSG P L +++ L++L + N+ G IP ++ + L+ LIL N TGE+P+ L
Sbjct: 424 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 483
Query: 208 TKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSL 261
+ TNLN + +S+N +G+IP++IG+ + + L + +S G IPA + SL
Sbjct: 484 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 537
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 129/272 (47%), Gaps = 16/272 (5%)
Query: 87 CSSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASL-QLVELS 145
C + + + L+ TG +P LS L L LS N L+G+ SL +L +L
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 445
Query: 146 VMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPA 205
+ N L G P+ L + TL+ L ++ N TG IP + NL + LS+N TGE+P
Sbjct: 446 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 505
Query: 206 ELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLR 265
+ +L NL L++S+N+FSG IP +G + + L + + G IPA++ + +
Sbjct: 506 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG--KIA 563
Query: 266 ISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFN--NLT---- 319
+ + G + K D M +C G + ++ G ++ N + N N+T
Sbjct: 564 ANFIAGKRYVYIKNDGMK------KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 617
Query: 320 -GGIPTTFEKLAKTNFMYLTGNKLTGPVPKYI 350
G TF+ F+ ++ N L+G +PK I
Sbjct: 618 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 649
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 121/265 (45%), Gaps = 23/265 (8%)
Query: 118 LKQLDLSRNCLTG---SFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNL------ 168
L LDLSRN L+G + + + L L+V N L FP ++ L +L
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLS 156
Query: 169 --SIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGK 226
SI G G + D L+ L +S N +G++ ++++ NL L +S NNFS
Sbjct: 157 ANSISGANVVGWVLSD--GCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTG 212
Query: 227 IPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKT 286
IP F+G +Q L I G+ L G +IS T L L IS P L +L+
Sbjct: 213 IP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS-NQFVGPIPPLPLKSLQY 270
Query: 287 LILTKCLIHGEIPDYI-GDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGP 345
L L + GEIPD++ G L +DLS N+ G +P F + + L+ N +G
Sbjct: 271 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 346 VPKYIF---NSNKNVDISLNNFTWE 367
+P K +D+S N F+ E
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGE 355
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 77/147 (52%), Gaps = 9/147 (6%)
Query: 92 CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQW---ASLQLVELSVMG 148
CH L+ Q G +L++L +++ G SP + S+ +++S
Sbjct: 584 CHGAGNLLEFQ---GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY-- 638
Query: 149 NRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELT 208
N LSG PK + ++ L L++ N +GSIP ++ L L L LSSN G +P ++
Sbjct: 639 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 698
Query: 209 KLTNLNDLRISDNNFSGKIPEFIGKWK 235
LT L ++ +S+NN SG IPE +G+++
Sbjct: 699 ALTMLTEIDLSNNNLSGPIPE-MGQFE 724
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 168 LSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKI 227
L + N+ +G IP +I + L L L N +G +P E+ L LN L +S N G+I
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 228 PEFIGKWKKIQKLHIQGSSLEGPIP 252
P+ + + ++ + ++L GPIP
Sbjct: 694 PQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 105/252 (41%), Gaps = 52/252 (20%)
Query: 123 LSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKV--LTNITTLKNLSIEGNL--FTGS 178
LS + + GS S S L L + N LSGP + L + + LK L++ N F G
Sbjct: 81 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 140
Query: 179 IPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQ 238
+ + KL +L+ L LS+NS +G N+ +SD +++
Sbjct: 141 VSGGL-KLNSLEVLDLSANSISG---------ANVVGWVLSDG------------CGELK 178
Query: 239 KLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEI 298
L I G+ + G + S R +L+ F + N T I
Sbjct: 179 HLAISGNKISGDVDVS----------RCVNLE-----FLDVSSNNFST----------GI 213
Query: 299 PDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVD 358
P ++GD + L+++D+S N L+G + + ++ N+ GP+P S + +
Sbjct: 214 P-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS 272
Query: 359 ISLNNFTWESSD 370
++ N FT E D
Sbjct: 273 LAENKFTGEIPD 284
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 97/321 (30%), Positives = 152/321 (47%), Gaps = 41/321 (12%)
Query: 86 DCSSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSP-QWASLQLVEL 144
DCS+ + + + L+G +S LK L++S N G P SLQ L
Sbjct: 221 DCSA----LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQY--L 274
Query: 145 SVMGNRLSGPFPKVLTNIT-TLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGEL 203
S+ N+ +G P L+ TL L + GN F G++PP L+ L LSSN+F+GEL
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334
Query: 204 PAE-LTKLTNLNDLRISDNNFSGKIPEFIGKWKK-------------------------- 236
P + L K+ L L +S N FSG++PE +
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394
Query: 237 -IQKLHIQGSSLEGPIPASISALTSLTDLRIS--DLKGS-ESAFPKLDKMNLKTLILTKC 292
+Q+L++Q + G IP ++S + L L +S L G+ S+ L K L+ L L
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK--LRDLKLWLN 452
Query: 293 LIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFN 352
++ GEIP + + L+ + L FN+LTG IP+ N++ L+ N+LTG +PK+I
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512
Query: 353 SNKNVDISLNNFTWESSDPIE 373
+ L+N ++ + P E
Sbjct: 513 LENLAILKLSNNSFSGNIPAE 533
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 88/303 (29%), Positives = 142/303 (46%), Gaps = 26/303 (8%)
Query: 89 SATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMG 148
S +V++ L L+GT+P+ L L L+ L L N L G + ++ +E ++
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474
Query: 149 -NRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAEL 207
N L+G P L+N T L +S+ N TG IP I +L NL L LS+NSF+G +PAEL
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534
Query: 208 TKLTNLNDLRISDNNFSGKIP------------EFIGKWKKI--------QKLHIQGSSL 247
+L L ++ N F+G IP FI + + ++ H G+ L
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594
Query: 248 E--GPIPASISALTSLTDLRISDLKGSESAFPKLDKM-NLKTLILTKCLIHGEIPDYIGD 304
E G ++ L++ I+ P D ++ L ++ ++ G IP IG
Sbjct: 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 654
Query: 305 MTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYI--FNSNKNVDISLN 362
M L ++L N+++G IP L N + L+ NKL G +P+ + +D+S N
Sbjct: 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714
Query: 363 NFT 365
N +
Sbjct: 715 NLS 717
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 97/174 (55%), Gaps = 3/174 (1%)
Query: 91 TCHVVTIALKAQNLTGTLPTELSK--LRYLKQLDLSRNCLTGSFSPQWASL-QLVELSVM 147
+ ++T+ L + N +G + L + L++L L N TG P ++ +LV L +
Sbjct: 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426
Query: 148 GNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAEL 207
N LSG P L +++ L++L + N+ G IP ++ + L+ LIL N TGE+P+ L
Sbjct: 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486
Query: 208 TKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSL 261
+ TNLN + +S+N +G+IP++IG+ + + L + +S G IPA + SL
Sbjct: 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 129/272 (47%), Gaps = 16/272 (5%)
Query: 87 CSSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASL-QLVELS 145
C + + + L+ TG +P LS L L LS N L+G+ SL +L +L
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448
Query: 146 VMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPA 205
+ N L G P+ L + TL+ L ++ N TG IP + NL + LS+N TGE+P
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508
Query: 206 ELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLR 265
+ +L NL L++S+N+FSG IP +G + + L + + G IPA++ + +
Sbjct: 509 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG--KIA 566
Query: 266 ISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFN--NLT---- 319
+ + G + K D M +C G + ++ G ++ N + N N+T
Sbjct: 567 ANFIAGKRYVYIKNDGMK------KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620
Query: 320 -GGIPTTFEKLAKTNFMYLTGNKLTGPVPKYI 350
G TF+ F+ ++ N L+G +PK I
Sbjct: 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 121/265 (45%), Gaps = 23/265 (8%)
Query: 118 LKQLDLSRNCLTG---SFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNL------ 168
L LDLSRN L+G + + + L L+V N L FP ++ L +L
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLS 159
Query: 169 --SIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGK 226
SI G G + D L+ L +S N +G++ ++++ NL L +S NNFS
Sbjct: 160 ANSISGANVVGWVLSD--GCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTG 215
Query: 227 IPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKT 286
IP F+G +Q L I G+ L G +IS T L L IS P L +L+
Sbjct: 216 IP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS-NQFVGPIPPLPLKSLQY 273
Query: 287 LILTKCLIHGEIPDYI-GDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGP 345
L L + GEIPD++ G L +DLS N+ G +P F + + L+ N +G
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 346 VPKYIF---NSNKNVDISLNNFTWE 367
+P K +D+S N F+ E
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGE 358
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 77/147 (52%), Gaps = 9/147 (6%)
Query: 92 CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQW---ASLQLVELSVMG 148
CH L+ Q G +L++L +++ G SP + S+ +++S
Sbjct: 587 CHGAGNLLEFQ---GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY-- 641
Query: 149 NRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELT 208
N LSG PK + ++ L L++ N +GSIP ++ L L L LSSN G +P ++
Sbjct: 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701
Query: 209 KLTNLNDLRISDNNFSGKIPEFIGKWK 235
LT L ++ +S+NN SG IPE +G+++
Sbjct: 702 ALTMLTEIDLSNNNLSGPIPE-MGQFE 727
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 168 LSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKI 227
L + N+ +G IP +I + L L L N +G +P E+ L LN L +S N G+I
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 228 PEFIGKWKKIQKLHIQGSSLEGPIP 252
P+ + + ++ + ++L GPIP
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 107/256 (41%), Gaps = 60/256 (23%)
Query: 123 LSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPD 182
LS + + GS S S L L + N LSGP +T +T+L + S
Sbjct: 84 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGP----VTTLTSLGSCS------------- 126
Query: 183 IRKLINLQKLILSSNS--FTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKW------ 234
L+ L +SSN+ F G++ L KL +L L +S N+ SG +G W
Sbjct: 127 -----GLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGA--NVVG-WVLSDGC 177
Query: 235 KKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLI 294
+++ L I G+ + G + S +NL+ L ++
Sbjct: 178 GELKHLAISGNKISGDVDVSRC-------------------------VNLEFLDVSSNNF 212
Query: 295 HGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSN 354
IP ++GD + L+++D+S N L+G + + ++ N+ GP+P S
Sbjct: 213 STGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSL 271
Query: 355 KNVDISLNNFTWESSD 370
+ + ++ N FT E D
Sbjct: 272 QYLSLAENKFTGEIPD 287
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/313 (25%), Positives = 126/313 (40%), Gaps = 57/313 (18%)
Query: 37 HAEEVKALKQIGRKLGKKDWNFGVDPCSQKGNWELSSDDKKGFESNVTCDCSSATCHVVT 96
+ ++ +AL QI + LG + +W ++D V CD + T V
Sbjct: 4 NPQDKQALLQIKKDLGNP---------TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNN 54
Query: 97 IALKAQNLTGT--LPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGP 154
+ L NL +P+ L+ L YL L + G N L GP
Sbjct: 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYI------GGI----------------NNLVGP 92
Query: 155 FPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLN 214
P + +T L L I +G+IP + ++ L L S N+ +G LP ++ L NL
Sbjct: 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152
Query: 215 DLRISDNNFSGKIPEFIGKWKKI-QKLHIQGSSLEGPIPASISALT-SLTDLRISDLKGS 272
+ N SG IP+ G + K+ + I + L G IP + + L + DL + L+G
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGD 212
Query: 273 ESAFPKLDK----------------------MNLKTLILTKCLIHGEIPDYIGDMTKLKN 310
S DK NL L L I+G +P + + L +
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272
Query: 311 IDLSFNNLTGGIP 323
+++SFNNL G IP
Sbjct: 273 LNVSFNNLCGEIP 285
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 26/143 (18%)
Query: 208 TKLTNLNDLRISDNNFSGK--IPEFIGKWKKIQKLHIQG-SSLEGPIPASISALTSLTDL 264
T+ +N+L +S N IP + + L+I G ++L GPIP +I+ LT L L
Sbjct: 47 TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106
Query: 265 RISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPT 324
I T + G IPD++ + L +D S+N L+G +P
Sbjct: 107 YI-----------------------THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP 143
Query: 325 TFEKLAKTNFMYLTGNKLTGPVP 347
+ L + GN+++G +P
Sbjct: 144 SISSLPNLVGITFDGNRISGAIP 166
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 12/165 (7%)
Query: 184 RKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPE--FIGKWKKIQKLH 241
+ L +L+ L LS N L NLN L + DN + IP F+ K+++L
Sbjct: 85 KHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFV-YLSKLKELW 142
Query: 242 IQGSSLEGPIPASISALTSLTDLRISDLKG----SESAFPKLDKMNLKTLILTKCLIHGE 297
++ + +E + + + SL L + +LK SE AF L NL+ L L C + E
Sbjct: 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS--NLRYLNLAMCNLR-E 199
Query: 298 IPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKL 342
IP+ + + KL +DLS N+L+ P +F+ L +++ +++
Sbjct: 200 IPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 237 IQKLHIQGSSLEGPIPASISALTSLTDLRISDLK-GSESAFPKLDKMNLKTLILTKCLIH 295
+ L + G+ ++ P S S LTSL +L + K S +FP + LK L + IH
Sbjct: 82 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141
Query: 296 G-EIPDYIGDMTKLKNIDLSFN 316
++P Y ++T L ++DLS+N
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYN 163
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 237 IQKLHIQGSSLEGPIPASISALTSLTDLRISDLK-GSESAFPKLDKMNLKTLILTKCLIH 295
+ L + G+ ++ P S S LTSL +L + K S +FP + LK L + IH
Sbjct: 77 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 136
Query: 296 G-EIPDYIGDMTKLKNIDLSFN 316
++P Y ++T L ++DLS+N
Sbjct: 137 SCKLPAYFSNLTNLVHVDLSYN 158
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 79/179 (44%), Gaps = 9/179 (5%)
Query: 143 ELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDI-RKLINLQKLILSSNSFTG 201
+L + N+LS K +T L+ L + N ++P I ++L NL+ L ++ N
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA 99
Query: 202 ELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSL 261
+L NL +LR+ N P K+ L + + L+ LTSL
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159
Query: 262 TDLRI--SDLKG-SESAFPKLDKMNLKTLILTKCLIHGEIPDYIGD-MTKLKNIDLSFN 316
+LR+ + LK E AF KL LKTL L + +P+ D + KLK + L N
Sbjct: 160 KELRLYNNQLKRVPEGAFDKL--TELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 32/176 (18%)
Query: 178 SIPPDIRKLINLQKLILSSNSFTGELPAE-LTKLTNLNDLRISDNNFSGKIPEFIGKWKK 236
+IP D +KL +LQ LSS LP++ +LT L L ++DN + K
Sbjct: 34 NIPADTKKL-DLQSNKLSS------LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN 86
Query: 237 IQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHG 296
++ L + + L+ L +L +LR LD+ LK+L
Sbjct: 87 LETLWVTDNKLQALPIGVFDQLVNLAELR-------------LDRNQLKSLP-------- 125
Query: 297 EIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFN 352
P +TKL + L +N L F+KL + L N+L VP+ F+
Sbjct: 126 --PRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR-VPEGAFD 178
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 309 KNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWES 368
K +DL N L+ F +L K +YL NKL +P IF KN++
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQ 98
Query: 369 SDPIECPRGSVNLVESYSSPRNKLDKVHP 397
+ PI VNL E RN+L + P
Sbjct: 99 ALPIGVFDQLVNLAE-LRLDRNQLKSLPP 126
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 79/197 (40%), Gaps = 18/197 (9%)
Query: 86 DCSSATCHVVTIALKAQ--------NLTGTLPTE----LSKLRYLKQLDLSRNCLTGSFS 133
DCSS + + A N +LP++ L+KLR L D L
Sbjct: 22 DCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF 81
Query: 134 PQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDI-RKLINLQKL 192
+ +L+ L V N+L V + L L ++ N S+PP + L L L
Sbjct: 82 KELKNLE--TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYL 138
Query: 193 ILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPE-FIGKWKKIQKLHIQGSSLEGPI 251
L N KLT+L +LR+ +N ++PE K +++ L + + L+
Sbjct: 139 SLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVP 197
Query: 252 PASISALTSLTDLRISD 268
+ +L L L++ +
Sbjct: 198 EGAFDSLEKLKMLQLQE 214
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 3/126 (2%)
Query: 235 KKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKM--NLKTLILTKC 292
+ + L + ++L G A+ + LT L L +SD P + +L TL L +C
Sbjct: 55 RNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRC 114
Query: 293 LIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFN 352
+ P + L+ + L NNL TF L ++L GN++ VP++ F
Sbjct: 115 GLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPS-VPEHAFR 173
Query: 353 SNKNVD 358
++D
Sbjct: 174 GLHSLD 179
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 81/208 (38%), Gaps = 12/208 (5%)
Query: 166 KNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDN-NFS 224
+ + + GN + + NL L L SN+ G A T LT L L +SDN
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 225 GKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNL 284
P + LH+ L+ P L +L L + D + A P +L
Sbjct: 94 VVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD--NNLQALPDNTFRDL 151
Query: 285 KTLILTKCLIHG----EIPDY-IGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTG 339
LT +HG +P++ + L + L N++ P F L + +YL
Sbjct: 152 GN--LTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFA 209
Query: 340 NKLTGPVPKYIFNSNKNVD-ISLNNFTW 366
N L+ +P + +++ + LN+ W
Sbjct: 210 NNLSM-LPAEVLVPLRSLQYLRLNDNPW 236
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 60/138 (43%), Gaps = 8/138 (5%)
Query: 141 LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFT 200
L L + GNR+ + +L L + N P R L L L L +N+ +
Sbjct: 154 LTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS 213
Query: 201 GELPAE-LTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGP--IPASISA 257
LPAE L L +L LR++DN + W +QK +GSS E P +P ++
Sbjct: 214 -MLPAEVLVPLRSLQYLRLNDNPWVCDC-RARPLWAWLQK--FRGSSSEVPCNLPQRLAG 269
Query: 258 LTSLTDLRISDLKGSESA 275
L L SDL+G A
Sbjct: 270 -RDLKRLAASDLEGCAVA 286
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 101/220 (45%), Gaps = 26/220 (11%)
Query: 184 RKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQ 243
+ L +L+ L LS N L +LN L + DN + + K+++L ++
Sbjct: 56 KHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLR 115
Query: 244 GSSLEGPIPASISALTSLTDLRISDLKG----SESAFPKLDKMNLKTLILTKCLIHGEIP 299
+ +E + + + SL L + +LK SE+AF L +NL+ L L C + +IP
Sbjct: 116 NNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGL--VNLRYLNLGMCNL-KDIP 172
Query: 300 DYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVD- 358
+ + +L+ ++LS N L P +F+ L ++L ++ + + F+ K+++
Sbjct: 173 NLTA-LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV-ATIERNAFDDLKSLEE 230
Query: 359 --ISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVH 396
+S NN ++L +P ++L++VH
Sbjct: 231 LNLSHNNL--------------MSLPHDLFTPLHRLERVH 256
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 101/221 (45%), Gaps = 26/221 (11%)
Query: 183 IRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHI 242
+ L +L+ L LS N L +LN L + DN + + K+++L +
Sbjct: 55 FKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWL 114
Query: 243 QGSSLEGPIPASISALTSLTDLRISDLKG----SESAFPKLDKMNLKTLILTKCLIHGEI 298
+ + +E + + + SL L + +LK SE+AF L +NL+ L L C + +I
Sbjct: 115 RNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGL--VNLRYLNLGMCNL-KDI 171
Query: 299 PDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVD 358
P+ + +L+ ++LS N L P +F+ L ++L ++ + + F+ K+++
Sbjct: 172 PNLTA-LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV-ATIERNAFDDLKSLE 229
Query: 359 ---ISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVH 396
+S NN ++L +P ++L++VH
Sbjct: 230 ELNLSHNNL--------------MSLPHDLFTPLHRLERVH 256
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 662 QTGLYTLRQIKAATNNFDPANKVGEGGFGSVYK 694
Q ++LR+++ A++NF N +G GGFG VYK
Sbjct: 24 QLKRFSLRELQVASDNFSNKNILGRGGFGKVYK 56
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 662 QTGLYTLRQIKAATNNFDPANKVGEGGFGSVYK 694
Q ++LR+++ A++NF N +G GGFG VYK
Sbjct: 16 QLKRFSLRELQVASDNFXNKNILGRGGFGKVYK 48
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 8/134 (5%)
Query: 141 LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFT 200
L L + GNR+S + + +L L + N P R L L L L +N+ +
Sbjct: 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214
Query: 201 GELPAE-LTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGP--IPASISA 257
LP E L L L LR++DN + W +QK +GSS E P +P ++
Sbjct: 215 A-LPTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWLQK--FRGSSSEVPCSLPQRLAG 270
Query: 258 LTSLTDLRISDLKG 271
L L +DL+G
Sbjct: 271 -RDLKRLAANDLQG 283
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 8/134 (5%)
Query: 141 LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFT 200
L L + GNR+S + + +L L + N P R L L L L +N+ +
Sbjct: 154 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 213
Query: 201 GELPAE-LTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGP--IPASISA 257
LP E L L L LR++DN + W +QK +GSS E P +P ++
Sbjct: 214 A-LPTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWLQK--FRGSSSEVPCSLPQRLAG 269
Query: 258 LTSLTDLRISDLKG 271
L L +DL+G
Sbjct: 270 -RDLKRLAANDLQG 282
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Query: 653 DKELRGLDLQTGLYTLRQIKAATNNFDP------ANKVGEGGFGSVYK 694
+K L D + ++ ++K TNNFD NK+GEGGFG VYK
Sbjct: 2 NKSLEVSDTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYK 49
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Query: 653 DKELRGLDLQTGLYTLRQIKAATNNFDP------ANKVGEGGFGSVYK 694
+K L D + ++ ++K TNNFD NK+GEGGFG VYK
Sbjct: 2 NKSLEVSDTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYK 49
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 6/35 (17%)
Query: 666 YTLRQIKAATNNFDP------ANKVGEGGFGSVYK 694
++ ++K TNNFD NK+GEGGFG VYK
Sbjct: 9 FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYK 43
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 72/172 (41%), Gaps = 19/172 (11%)
Query: 155 FPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTK----- 209
P L+ L++ N ++P I L L++L + + ELP L
Sbjct: 119 LPDTXQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177
Query: 210 ----LTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLR 265
L NL LR+ +P I + ++ L I+ S L PA I L L +L
Sbjct: 178 EHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEEL- 234
Query: 266 ISDLKGSESA--FPKL--DKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDL 313
DL+G + +P + + LK LIL C +P I +T+L+ +DL
Sbjct: 235 --DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 107 TLPTELSKLRYLKQLDLSRNCLTGSFSPQWASL-QLVELSVMGNRLSGPFPKVLTNITTL 165
+LP ++ L+ LK L + RN + P L +L EL + G +P + L
Sbjct: 197 SLPASIANLQNLKSLKI-RNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255
Query: 166 KNLSIE--GNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKL 210
K L ++ NL T +P DI +L L+KL L LP+ + +L
Sbjct: 256 KRLILKDCSNLLT--LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
Query: 666 YTLRQIKAATNNFDP------ANKVGEGGFGSVYK 694
++ ++K TNNFD NK GEGGFG VYK
Sbjct: 6 FSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYK 40
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 252 PASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNI 311
PA+ + ++ D R L + P+ + + L + I P KL+ I
Sbjct: 6 PAACTCSNNIVDCRGKGLTEIPTNLPE----TITEIRLEQNTIKVIPPGAFSPYKKLRRI 61
Query: 312 DLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF 351
DLS N ++ P F+ L N + L GNK+T +PK +F
Sbjct: 62 DLSNNQISELAPDAFQGLRSLNSLVLYGNKITE-LPKSLF 100
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 252 PASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNI 311
PA+ + ++ D R L + P+ + + L + I P KL+ I
Sbjct: 6 PAACTCSNNIVDCRGKGLTEIPTNLPE----TITEIRLEQNTIKVIPPGAFSPYKKLRRI 61
Query: 312 DLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF 351
DLS N ++ P F+ L N + L GNK+T +PK +F
Sbjct: 62 DLSNNQISELAPDAFQGLRSLNSLVLYGNKITE-LPKSLF 100
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 4/124 (3%)
Query: 144 LSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDI-RKLINLQKLILSSNSFTGE 202
L++ GN+L L +T L L + GN S+P + KL NL++L+L N
Sbjct: 68 LALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSL 124
Query: 203 LPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLT 262
KLTNL L ++ N K + +L + + L+ LT L
Sbjct: 125 PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK 184
Query: 263 DLRI 266
DLR+
Sbjct: 185 DLRL 188
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 25/159 (15%)
Query: 183 IRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHI 242
+++L NL LIL+ N KLTNL +L + +N K + L++
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140
Query: 243 QGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYI 302
+ L+ LT+LT+L +S + +L + P+ +
Sbjct: 141 AHNQLQSLPKGVFDKLTNLTELDLS--------YNQLQSL----------------PEGV 176
Query: 303 GD-MTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGN 340
D +T+LK++ L N L F++L +++L N
Sbjct: 177 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
>pdb|2K46|A Chain A, Xenopus Laevis Malectin Complexed With Nigerose
(Glcalpha1- 3glc)
pdb|2KR2|A Chain A, Xenopus Laevis Malectin Complexed With Maltose
(Glcalpha1-4glc)
Length = 190
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 484 DLELYRTARVSPLSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQEKL 543
D LY+T R + S Y G Y + L FAE+ F +++FD+ +
Sbjct: 57 DQVLYQTERYNEDSFGYDIPIKEEGEYVLVLKFAEVYFAQSQ------QKVFDVRVNGHT 110
Query: 544 VKKDFNIEDEAG 555
V KD +I D G
Sbjct: 111 VVKDLDIFDRVG 122
>pdb|2JWP|A Chain A, Malectin
Length = 174
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 484 DLELYRTARVSPLSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQEKL 543
D LY+T R + S Y G Y + L FAE+ F +++FD+ +
Sbjct: 53 DQVLYQTERYNEDSFGYDIPIKEEGEYVLVLKFAEVYFAQSQ------QKVFDVRVNGHT 106
Query: 544 VKKDFNIEDEAG 555
V KD +I D G
Sbjct: 107 VVKDLDIFDRVG 118
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 94 VVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLT---GSFSPQWASLQLVELSVMGNR 150
+ ++++ NLT + L YL+ L+LS N ++ GS + LQ E+ ++G +
Sbjct: 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQ--EIQLVGGQ 283
Query: 151 LSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGE 202
L+ P + L+ L++ GN T + NL+ LIL SN +
Sbjct: 284 LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 3/120 (2%)
Query: 107 TLPTELSKLRYLKQLDLSRNCL--TGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITT 164
T+ + L L+ LD + L FS + L+ L + F + +++
Sbjct: 92 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 151
Query: 165 LKNLSIEGNLFTGSIPPDI-RKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNF 223
L+ L + GN F + PDI +L NL L LS P L++L L +S NNF
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 86/206 (41%), Gaps = 14/206 (6%)
Query: 168 LSIEGNLFTGSIPPDI-RKLINLQKLILSSN--SFTGELPAELTKLTNLNDLRISDNNFS 224
L +E N S+P + KL L KL LSSN SF G T+L L +S N
Sbjct: 33 LELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91
Query: 225 GKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMN- 283
F+G ++++ L Q S+L+ + S SL +L D+ + + N
Sbjct: 92 TMSSNFLG-LEQLEHLDFQHSNLKQM--SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148
Query: 284 LKTLILTK----CLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTG 339
L +L + K +PD ++ L +DLS L PT F L+ + ++
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 340 NKLTG--PVPKYIFNSNKNVDISLNN 363
N P NS + +D SLN+
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLNH 234
>pdb|4DWE|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacova_03992)
From Bacteroides Ovatus Atcc 8483 At 2.01 A Resolution
Length = 480
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 22/95 (23%)
Query: 95 VTIALKAQNLTGTLPTELSKLRYLKQ---LDLSRNCLTGSFSPQWASLQLVELSVMGNRL 151
+TI LKA G L TE+ L+Y K L +C +FS WA++ LS +
Sbjct: 49 ITIHLKADRQVGYLYTEIPTLKYNKDWLFLXTQDDCXHSAFSYTWAAIHGKPLSYI---- 104
Query: 152 SGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKL 186
++ L+N G +PPD L
Sbjct: 105 ------YYCDLAHLQN---------GDLPPDYYSL 124
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 93 HVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASL-QLVELSVMGNRL 151
H+V + LK LTG P ++++L L N + + + L QL L++ N++
Sbjct: 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI 114
Query: 152 SGPFPKVLTNITTLKNLSIEGNLF 175
S P ++ +L +L++ N F
Sbjct: 115 SCVMPGSFEHLNSLTSLNLASNPF 138
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 114 KLRYLKQLDLSRNCLTGSFSPQW--ASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIE 171
+L +L +L+L RN LTG P + + EL + N++ K+ + LK L++
Sbjct: 52 RLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110
Query: 172 GNLFTGSIPPDIRKLINLQKLILSSNSF 199
N + +P L +L L L+SN F
Sbjct: 111 DNQISCVMPGSFEHLNSLTSLNLASNPF 138
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 102/242 (42%), Gaps = 52/242 (21%)
Query: 179 IPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKI-PEFIGKWKKI 237
+P I + +L+KL+L++NSF +L DL I N + + K + +
Sbjct: 292 LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENL 351
Query: 238 QKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSE------SAF---PKLDKMN----- 283
QKL + S +E ++ L +L L+ +L +E AF P+L+ ++
Sbjct: 352 QKLDLSHSDIEASDCCNLQ-LKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTH 410
Query: 284 ---------------LKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEK 328
L+ L L+ CL+ + + L++++L N+ G
Sbjct: 411 LHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDG------S 464
Query: 329 LAKTNFMYLTG----------NKLTGPVPKYIFNSNKNV---DISLNNFTWESSDPIECP 375
++KTN + + G N L+ + + F+ +NV D+S N+ T +S D +
Sbjct: 465 ISKTNLLQMVGSLEILILSSCNLLS--IDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHL 522
Query: 376 RG 377
+G
Sbjct: 523 KG 524
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 108 LPTELSKLRYLKQLDLSRNCLTGSFSPQWASL-QLVELSVMGNRLSGPFPKVLTNITTLK 166
+P ELS ++L +DLS N ++ + ++++ QL+ L + NRL P+ + +L+
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 167 NLSIEGN 173
LS+ GN
Sbjct: 106 LLSLHGN 112
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 304 DMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNN 363
+MT+L + LS+N L P TF+ L + L GN ++ VP+ FN D+S +
Sbjct: 76 NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFN-----DLSALS 129
Query: 364 FTWESSDPIEC 374
++P+ C
Sbjct: 130 HLAIGANPLYC 140
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 106/258 (41%), Gaps = 34/258 (13%)
Query: 131 SFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIE----GNLFTGSIPPDIRKL 186
S++ W L+LV G FP + + +LK L+ GN F+ P
Sbjct: 301 SYNFGWQHLELVNCKF------GQFPTL--KLKSLKRLTFTSNKGGNAFSEVDLP----- 347
Query: 187 INLQKLILSSN--SFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQG 244
+L+ L LS N SF G T+L L +S N F+G ++++ L Q
Sbjct: 348 -SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQH 405
Query: 245 SSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMN-LKTLILTK----CLIHGEIP 299
S+L+ + S SL +L D+ + + N L +L + K +P
Sbjct: 406 SNLKQM--SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463
Query: 300 DYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVD- 358
D ++ L +DLS L PT F L+ + + N+L VP IF+ ++
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQK 522
Query: 359 ISLNNFTWESSDPIECPR 376
I L+ W+ S CPR
Sbjct: 523 IWLHTNPWDCS----CPR 536
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 282 MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGN 340
+NL+ L+LT I+ D + L+++DLS+N L+ + F+ L+ F+ L GN
Sbjct: 76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 134
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 6/138 (4%)
Query: 152 SGPFPKVLTNIT-TLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKL 210
SG + + +T +K+L + N T D+++ +NLQ L+L+SN + L
Sbjct: 40 SGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSL 99
Query: 211 TNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASI-SALTSLTDLRISDL 269
+L L +S N S + + L++ G+ + S+ S LT L LR+
Sbjct: 100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV--- 156
Query: 270 KGSESAFPKLDKMNLKTL 287
G+ F K+ + + L
Sbjct: 157 -GNMDTFTKIQRKDFAGL 173
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Query: 118 LKQLDLSRNCLTGSF---SPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNL 174
L+ LD+S N L + WA LV L++ N L+G + L +K L + N
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILV-LNLSSNMLTGSVFRCLP--PKVKVLDLHNNR 461
Query: 175 FTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIP--EFIG 232
SIP D+ L LQ+L ++SN +LT+L + + DN + P ++
Sbjct: 462 IM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLS 520
Query: 233 KW 234
+W
Sbjct: 521 EW 522
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 172 GNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFI 231
NL +I +I K L +L L+ NS T ELPAE+ L+NL L +S N + +P +
Sbjct: 232 SNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAEL 289
Query: 232 G 232
G
Sbjct: 290 G 290
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 108 LPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKN 167
LP E+ L L+ LDLS N LT + + QL N ++ P N+ L+
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQF 320
Query: 168 LSIEGN 173
L +EGN
Sbjct: 321 LGVEGN 326
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
Query: 140 QLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPD-IRKLINLQKLILSSNS 198
QL +L + GN+L V +T LK L + N SIP KL NLQ L LS+N
Sbjct: 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQ 166
Query: 199 FTGELPAELTKLTNLNDLRISDNNFSGKIPE--FIGKW 234
+L L + + N F E ++ +W
Sbjct: 167 LQSVPHGAFDRLGKLQTITLFGNQFDCSRCETLYLSQW 204
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 238 QKLHIQGSSLEGPIPASISALTSLTDLRISDLKG-SESAFPKLDKMNLKTLILTKCLIHG 296
+++ QG SL+ +P+ I A T DL+ + L S++ F L K+ L + +
Sbjct: 17 KEVDCQGKSLDS-VPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ--LQT 73
Query: 297 EIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFN 352
D+T+L + L+ N L F+ L + + +YL GN+L +P +F+
Sbjct: 74 LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFD 128
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
Query: 141 LVELSVMG---NRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDI-RKLINLQKLILSS 196
L EL +G N+L+ V ++T L L + GN S+P + +L L++L L++
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNT 140
Query: 197 NSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLH 241
N KLTNL L +S N +P G + ++ KL
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPH--GAFDRLGKLQ 182
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 72/204 (35%), Gaps = 31/204 (15%)
Query: 183 IRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHI 242
R L L L L N LT L L +++N + ++ KL++
Sbjct: 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114
Query: 243 QGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYI 302
G+ L+ LT L +LR++ + DK
Sbjct: 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK--------------------- 153
Query: 303 GDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF-------NSNK 355
+T L+ + LS N L F++L K + L GN+ + ++ NSNK
Sbjct: 154 --LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCETLYLSQWIRENSNK 211
Query: 356 NVDISLNNFTWESSDPIECPRGSV 379
D + N ES D + C G V
Sbjct: 212 VKDGTGQNL-HESPDGVTCSDGKV 234
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
Query: 140 QLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPD-IRKLINLQKLILSSNS 198
QL +L + GN+L V +T LK L + N SIP KL NLQ L LS+N
Sbjct: 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQ 166
Query: 199 FTGELPAELTKLTNLNDLRISDNNFSGKIPE--FIGKW 234
+L L + + N F E ++ +W
Sbjct: 167 LQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQW 204
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 238 QKLHIQGSSLEGPIPASISALTSLTDLRISDLKG-SESAFPKLDKMNLKTLILTKCLIHG 296
+++ QG SL+ +P+ I A T DL+ + L S++ F L K+ L + +
Sbjct: 17 KEVDCQGKSLDS-VPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ--LQT 73
Query: 297 EIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFN 352
D+T+L + L+ N L F+ L + + +YL GN+L +P +F+
Sbjct: 74 LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFD 128
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
Query: 141 LVELSVMG---NRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDI-RKLINLQKLILSS 196
L EL +G N+L+ V ++T L L + GN S+P + +L L++L L++
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNT 140
Query: 197 NSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLH 241
N KLTNL L +S N +P G + ++ KL
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPH--GAFDRLGKLQ 182
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 72/204 (35%), Gaps = 31/204 (15%)
Query: 183 IRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHI 242
R L L L L N LT L L +++N + ++ KL++
Sbjct: 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114
Query: 243 QGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYI 302
G+ L+ LT L +LR++ + DK
Sbjct: 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK--------------------- 153
Query: 303 GDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF-------NSNK 355
+T L+ + LS N L F++L K + L GN+ + ++ NSNK
Sbjct: 154 --LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNK 211
Query: 356 NVDISLNNFTWESSDPIECPRGSV 379
D + N ES D + C G V
Sbjct: 212 VKDGTGQNL-HESPDGVTCSDGKV 234
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 282 MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGN 340
+NL+ L+LT I+ D + L+++DLS+N L+ + F+ L+ F+ L GN
Sbjct: 50 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 108
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 4/126 (3%)
Query: 144 LSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDI-RKLINLQKLILSSNSFTGE 202
L++ GN+L L +T L L + GN S+P + KL NL++L+L N
Sbjct: 68 LALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSL 124
Query: 203 LPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLT 262
KLTNL L + N K + +L + + L+ LT L
Sbjct: 125 PDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLK 184
Query: 263 DLRISD 268
L ++D
Sbjct: 185 QLSLND 190
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 254 SISALTSLTDLRISDLKGSE----SAFPKLDKMNLKTLILTKCLIHGEIPDYIGD-MTKL 308
S+ + L ++R L G++ SA +L NL LILT + +P+ + D +T L
Sbjct: 55 SVQGIQYLPNVRYLALGGNKLHDISALKEL--TNLTYLILTGNQLQS-LPNGVFDKLTNL 111
Query: 309 KNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNV 357
K + L N L F+KL ++YL N+L +PK +F+ N+
Sbjct: 112 KELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQS-LPKGVFDKLTNL 159
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 13/141 (9%)
Query: 113 SKLRYLKQLDLSRNCLT-----GSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKN 167
++++ L+QLD+S+N ++ G S W L+ L++ N L+ + L +K
Sbjct: 371 TQMKSLQQLDISQNSVSYDEKKGDCS--WTK-SLLSLNMSSNILTDTIFRCLP--PRIKV 425
Query: 168 LSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKI 227
L + N SIP + KL LQ+L ++SN +LT+L + + N +
Sbjct: 426 LDLHSNKI-KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 484
Query: 228 P--EFIGKWKKIQKLHIQGSS 246
P +++ +W QGS+
Sbjct: 485 PRIDYLSRWLNKNSQKEQGSA 505
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%)
Query: 163 TTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNN 222
T + L + N T P L+NLQ+L +SN T KLT L L ++DN+
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92
Query: 223 F 223
Sbjct: 93 L 93
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 668 LRQIKAATNNFDPANKVGEGGFGSVYK 694
L ++ ATNNFD +G G FG VYK
Sbjct: 31 LVDLEEATNNFDHKFLIGHGVFGKVYK 57
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 668 LRQIKAATNNFDPANKVGEGGFGSVYK 694
L ++ ATNNFD +G G FG VYK
Sbjct: 31 LVDLEEATNNFDHKFLIGHGVFGKVYK 57
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 55/128 (42%), Gaps = 9/128 (7%)
Query: 106 GTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTL 165
GTLP L LDLS N L L L V NRL+ L + L
Sbjct: 74 GTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 166 KNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTK-LTNLNDLRISDNNFS 224
+ L ++GN P + L+KL L++N+ T ELPA L L NL+ L + +N+
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY 185
Query: 225 GKIPEFIG 232
F G
Sbjct: 186 TIPKGFFG 193
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 52/119 (43%), Gaps = 9/119 (7%)
Query: 106 GTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTL 165
GTLP L LDLS N L L L V NRL+ L + L
Sbjct: 74 GTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 166 KNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTK-LTNLNDLRISDNNF 223
+ L ++GN P + L+KL L++N T ELPA L L NL+ L + +N+
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 52/119 (43%), Gaps = 9/119 (7%)
Query: 106 GTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTL 165
GTLP L LDLS N L L L V NRL+ L + L
Sbjct: 74 GTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 166 KNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTK-LTNLNDLRISDNNF 223
+ L ++GN P + L+KL L++N T ELPA L L NL+ L + +N+
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 52/119 (43%), Gaps = 9/119 (7%)
Query: 106 GTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTL 165
GTLP L LDLS N L L L V NRL+ L + L
Sbjct: 74 GTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 166 KNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTK-LTNLNDLRISDNNF 223
+ L ++GN P + L+KL L++N T ELPA L L NL+ L + +N+
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 21/128 (16%)
Query: 276 FPKLDKMNLKTLILTKCLIHGEIP---------------DYIGD-MTKLKNIDLSFNNLT 319
+ +L ++NL LTK + G +P +G + L +D+SFN LT
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 320 GGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDPIECPRGSV 379
L + +YL GN+L P + + K +SL N +D E P G +
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN-----NDLTELPAGLL 168
Query: 380 NLVESYSS 387
N +E+ +
Sbjct: 169 NGLENLDT 176
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 165 LKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFS 224
+K+L + N T D+R NLQ LIL S+ L +L L +SDN+ S
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87
Query: 225 GKIPEFIGKWKKIQKLHIQGSSLEG-PIPASISALTSLTDLRISDLK 270
+ G ++ L++ G+ + + + LT+L LRI +++
Sbjct: 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
Query: 106 GTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTL 165
GTLP L LDLS N L L L V NRL+ L + L
Sbjct: 74 GTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 166 KNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTK-LTNLNDLRISDNNF 223
+ L ++GN P + L+KL L++N+ T ELPA L L NL+ L + +N+
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 165 LKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFS 224
+K+L + N T D+R NLQ LIL S+ L +L L +SDN+ S
Sbjct: 54 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 113
Query: 225 GKIPEFIGKWKKIQKLHIQGSSLEGP-IPASISALTSLTDLRISDLK 270
+ G ++ L++ G+ + + + LT+L LRI +++
Sbjct: 114 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 160
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 82/340 (24%), Positives = 138/340 (40%), Gaps = 41/340 (12%)
Query: 88 SSATCHVVTIALKAQNLTGT----LPTELSKLRYLKQLDLSRNCLTGSFSPQWASL-QLV 142
SS T H + L+ +LT T LP+ L L LK+L LS N ++ L
Sbjct: 270 SSNTFHCFS-GLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT 328
Query: 143 ELSVMGN--RLSGPFPKVLTNITTLKNLSIEGNLFTGS--IPPDIRKLINLQKLILSSNS 198
LS+ GN RL L N+ L+ L + + S +R L +LQ L LS N
Sbjct: 329 HLSIKGNTKRLELG-TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387
Query: 199 FTGELPAELTKLTNLNDLRISDNNFSG-KIPEFIGKWKKIQKLHIQGSSLEGPIPASISA 257
L + L + D F+ K+ + ++ + L + S +S
Sbjct: 388 ---PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444
Query: 258 LTSLTDLRISDLKGSESAFPK--LDKMN-------LKTLILTKCLIHGEIPDYIGDMTKL 308
L L+ +L+G+ FPK + K N L+ L+L+ C + + +
Sbjct: 445 FDGLPALQHLNLQGNH--FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM 502
Query: 309 KNIDLSFNNLTGGIPTTFEKLAKTNFMYL--TGNKLTGPVPKY--IFNSNKNVDISLNNF 364
++DLS N LT ++ E L+ +YL N ++ +P I + + +++ N
Sbjct: 503 NHVDLSHNRLTS---SSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQN-- 557
Query: 365 TWESSDPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFP 404
P++C ++ +E Y KL+ L +N P
Sbjct: 558 ------PLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPP 591
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 55/128 (42%), Gaps = 9/128 (7%)
Query: 106 GTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTL 165
GTLP L LDLS N L L L V NRL+ L + L
Sbjct: 74 GTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 166 KNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTK-LTNLNDLRISDNNFS 224
+ L ++GN P + L+KL L++N+ T ELPA L L NL+ L + +N+
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY 185
Query: 225 GKIPEFIG 232
F G
Sbjct: 186 TIPKGFFG 193
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 25/130 (19%)
Query: 276 FPKLDKMNLKTLILTKCLIHGEIP---------------DYIGD-MTKLKNIDLSFNNLT 319
+ +L ++NL LTK + G +P +G + L +D+SFN LT
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113
Query: 320 GGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISL--NNFTWESSDPIECPRG 377
L + +YL GN+L P + + K +SL NN T E P G
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-------ELPAG 166
Query: 378 SVNLVESYSS 387
+N +E+ +
Sbjct: 167 LLNGLENLDT 176
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
Query: 106 GTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTL 165
GTLP L LDLS N L L L V NRL+ L + L
Sbjct: 74 GTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 166 KNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTK-LTNLNDLRISDNNF 223
+ L ++GN P + L+KL L++N+ T ELPA L L NL+ L + +N+
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
Query: 106 GTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTL 165
GTLP L LDLS N L L L V NRL+ L + L
Sbjct: 75 GTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 127
Query: 166 KNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTK-LTNLNDLRISDNNF 223
+ L ++GN P + L+KL L++N+ T ELPA L L NL+ L + +N+
Sbjct: 128 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 185
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 25/130 (19%)
Query: 276 FPKLDKMNLKTLILTKCLIHGEIP---------------DYIGD-MTKLKNIDLSFNNLT 319
+ +L ++NL LTK + G +P +G + L +D+SFN LT
Sbjct: 55 YTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 114
Query: 320 GGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISL--NNFTWESSDPIECPRG 377
L + +YL GN+L P + + K +SL NN T E P G
Sbjct: 115 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-------ELPAG 167
Query: 378 SVNLVESYSS 387
+N +E+ +
Sbjct: 168 LLNGLENLDT 177
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 54/128 (42%), Gaps = 9/128 (7%)
Query: 106 GTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTL 165
GTLP L LDLS N L L L V NRL+ L + L
Sbjct: 74 GTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 166 KNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTK-LTNLNDLRISDNNFS 224
+ L ++GN P + L+KL L++N T ELPA L L NL+ L + +N+
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLY 185
Query: 225 GKIPEFIG 232
F G
Sbjct: 186 TIPKGFFG 193
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 52/119 (43%), Gaps = 9/119 (7%)
Query: 106 GTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTL 165
GTLP L LDLS N L L L V NRL+ L + L
Sbjct: 74 GTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 166 KNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTK-LTNLNDLRISDNNF 223
+ L ++GN P + L+KL L++N T ELPA L L NL+ L + +N+
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 20/162 (12%)
Query: 187 INLQKLILSSNSFTGELPAEL------TKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKL 240
+N QK++ NS +LPA L +L NLNDL+I + + IQKL
Sbjct: 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYA-----FAYAHTIQKL 98
Query: 241 HIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPK---LDKMNLKTLILTKCLIHGE 297
++ +++ P + LT L + + S+ P+ + L TL ++ +
Sbjct: 99 YMGFNAIRYLPPHVFQNVPLLTVLVLE--RNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 156
Query: 298 IPDYIGDMTKLKNIDLSFNNLT----GGIPTTFEKLAKTNFM 335
D T L+N+ LS N LT IP+ F N +
Sbjct: 157 EDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL 198
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 299 PDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNV- 357
P +T+L ++L+ N LT F+KL K + L N+L +P +F++ K++
Sbjct: 57 PGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKS-IPMGVFDNLKSLT 115
Query: 358 DISLNNFTW--ESSD 370
I L N W E SD
Sbjct: 116 HIYLFNNPWDCECSD 130
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 61/153 (39%), Gaps = 23/153 (15%)
Query: 189 LQKLILSSNSFT----GELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQG 244
+QKL L + S T G LP+ L L L +L +SDN + + + H++
Sbjct: 83 IQKLSLQNCSLTEAGCGVLPSTLRSLPTLRELHLSDNPLGDAGLRLLCEGLLDPQCHLEK 142
Query: 245 SSLE---------GPIPASISALTSLTDLRISDLKGSESAFPKLDK------MNLKTLIL 289
LE P+ + + A +L +L +S+ E+ L + L+TL L
Sbjct: 143 LQLEYCRLTAASCEPLASVLRATRALKELTVSNNDIGEAGARVLGQGLADSACQLETLRL 202
Query: 290 TKC-LIHGEIPDYIG---DMTKLKNIDLSFNNL 318
C L D G L+ +DL N L
Sbjct: 203 ENCGLTPANCKDLCGIVASQASLRELDLGSNGL 235
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 20/162 (12%)
Query: 187 INLQKLILSSNSFTGELPAEL------TKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKL 240
+N QK++ NS +LPA L +L NLNDL+I + + IQKL
Sbjct: 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYA-----FAYAHTIQKL 104
Query: 241 HIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPK---LDKMNLKTLILTKCLIHGE 297
++ +++ P + LT L + + S+ P+ + L TL ++ +
Sbjct: 105 YMGFNAIRYLPPHVFQNVPLLTVLVLE--RNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 162
Query: 298 IPDYIGDMTKLKNIDLSFNNLT----GGIPTTFEKLAKTNFM 335
D T L+N+ LS N LT IP+ F N +
Sbjct: 163 EDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL 204
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,584,537
Number of Sequences: 62578
Number of extensions: 885348
Number of successful extensions: 2480
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 2141
Number of HSP's gapped (non-prelim): 244
length of query: 700
length of database: 14,973,337
effective HSP length: 106
effective length of query: 594
effective length of database: 8,340,069
effective search space: 4954000986
effective search space used: 4954000986
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)