Query 005361
Match_columns 700
No_of_seqs 748 out of 6548
Neff 9.4
Searched_HMMs 46136
Date Thu Mar 28 22:14:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005361.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005361hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.6E-39 3.6E-44 390.8 36.1 318 37-372 27-376 (968)
2 PLN00113 leucine-rich repeat r 100.0 5.4E-30 1.2E-34 308.4 22.0 279 92-372 118-400 (968)
3 KOG4194 Membrane glycoprotein 100.0 4.6E-31 1E-35 271.4 1.4 316 93-416 150-488 (873)
4 KOG4194 Membrane glycoprotein 99.9 4.5E-29 9.7E-34 256.8 2.1 304 90-397 123-433 (873)
5 KOG4237 Extracellular matrix p 99.9 3.2E-27 6.9E-32 233.3 -3.6 304 90-412 65-389 (498)
6 KOG0444 Cytoskeletal regulator 99.9 2.9E-25 6.2E-30 230.1 -2.0 257 110-371 97-381 (1255)
7 KOG0444 Cytoskeletal regulator 99.9 1.1E-24 2.4E-29 225.8 -0.0 266 93-365 33-304 (1255)
8 KOG0472 Leucine-rich repeat pr 99.8 3.2E-23 6.9E-28 205.3 -7.6 260 94-365 47-310 (565)
9 KOG0472 Leucine-rich repeat pr 99.8 2.7E-22 5.9E-27 198.7 -2.8 81 282-365 435-541 (565)
10 PF11721 Malectin: Di-glucose 99.8 2.2E-19 4.8E-24 168.4 8.4 167 415-599 2-172 (174)
11 PRK15370 E3 ubiquitin-protein 99.8 4.6E-18 1E-22 192.5 19.3 309 33-372 57-407 (754)
12 PRK15387 E3 ubiquitin-protein 99.8 2.7E-18 5.8E-23 193.1 15.3 239 93-371 223-464 (788)
13 PRK15370 E3 ubiquitin-protein 99.8 5.6E-18 1.2E-22 191.8 14.8 245 92-365 178-428 (754)
14 PRK15387 E3 ubiquitin-protein 99.7 1.3E-17 2.9E-22 187.5 15.6 256 94-394 203-459 (788)
15 KOG4237 Extracellular matrix p 99.7 7.7E-20 1.7E-24 181.3 -3.1 255 117-372 68-342 (498)
16 PLN03210 Resistant to P. syrin 99.7 7.6E-17 1.6E-21 195.1 21.9 258 93-363 612-904 (1153)
17 cd00116 LRR_RI Leucine-rich re 99.7 1.3E-18 2.9E-23 182.6 4.4 268 96-363 2-318 (319)
18 PLN03210 Resistant to P. syrin 99.7 9.6E-17 2.1E-21 194.2 20.2 255 107-371 579-864 (1153)
19 KOG0618 Serine/threonine phosp 99.7 5.5E-19 1.2E-23 192.4 -2.0 240 117-363 242-487 (1081)
20 KOG0618 Serine/threonine phosp 99.7 1.3E-18 2.9E-23 189.5 -3.7 261 96-366 182-466 (1081)
21 cd00116 LRR_RI Leucine-rich re 99.7 3.2E-17 6.8E-22 172.2 4.1 250 93-342 24-319 (319)
22 KOG0617 Ras suppressor protein 99.7 2.2E-18 4.9E-23 152.0 -4.6 161 91-257 32-194 (264)
23 KOG0617 Ras suppressor protein 99.6 5E-18 1.1E-22 149.8 -6.4 178 159-365 29-212 (264)
24 PLN03150 hypothetical protein; 99.5 5.8E-13 1.2E-17 150.7 14.7 152 34-198 367-526 (623)
25 PLN03150 hypothetical protein; 99.4 9E-13 1.9E-17 149.1 14.2 95 482-580 249-346 (623)
26 KOG0532 Leucine-rich repeat (L 99.3 2.9E-13 6.2E-18 140.9 -3.2 198 121-351 55-254 (722)
27 PF12819 Malectin_like: Carboh 99.2 1.9E-11 4.1E-16 128.1 9.6 91 482-579 231-328 (347)
28 KOG0532 Leucine-rich repeat (L 99.2 4.7E-13 1E-17 139.3 -2.9 181 114-327 73-254 (722)
29 COG4886 Leucine-rich repeat (L 99.2 3.2E-11 6.9E-16 130.5 8.6 200 143-350 97-297 (394)
30 COG4886 Leucine-rich repeat (L 99.1 1.4E-10 3E-15 125.5 7.5 198 120-326 97-297 (394)
31 KOG3207 Beta-tubulin folding c 99.1 3.6E-11 7.9E-16 121.9 1.0 136 210-345 196-341 (505)
32 KOG1259 Nischarin, modulator o 99.0 5.3E-11 1.2E-15 114.8 0.9 222 93-345 183-414 (490)
33 KOG1909 Ran GTPase-activating 99.0 5.9E-11 1.3E-15 117.4 0.2 229 92-343 30-311 (382)
34 KOG3207 Beta-tubulin folding c 99.0 9.4E-11 2E-15 119.0 0.6 183 161-343 119-314 (505)
35 KOG1909 Ran GTPase-activating 98.9 2E-10 4.3E-15 113.7 1.0 245 110-365 24-311 (382)
36 PF14580 LRR_9: Leucine-rich r 98.9 1.4E-09 3E-14 101.3 4.4 122 141-267 21-148 (175)
37 PF14580 LRR_9: Leucine-rich r 98.8 1.7E-09 3.6E-14 100.7 3.4 126 113-243 16-148 (175)
38 KOG1259 Nischarin, modulator o 98.8 1.6E-09 3.4E-14 104.8 0.9 130 230-366 279-413 (490)
39 KOG4658 Apoptotic ATPase [Sign 98.8 1.4E-08 2.9E-13 117.8 8.7 149 92-243 523-676 (889)
40 PF13855 LRR_8: Leucine rich r 98.7 4.9E-09 1.1E-13 80.1 2.4 61 282-342 1-61 (61)
41 KOG4658 Apoptotic ATPase [Sign 98.6 2.6E-08 5.6E-13 115.5 6.0 204 113-320 520-731 (889)
42 KOG0531 Protein phosphatase 1, 98.6 3.2E-09 6.9E-14 115.2 -3.0 128 114-248 70-199 (414)
43 PF13855 LRR_8: Leucine rich r 98.6 2.5E-08 5.4E-13 76.2 2.8 59 164-222 2-60 (61)
44 KOG0531 Protein phosphatase 1, 98.6 3.5E-09 7.6E-14 114.8 -2.9 192 141-344 74-269 (414)
45 KOG1187 Serine/threonine prote 98.6 3.1E-08 6.8E-13 104.4 3.6 38 662-699 61-98 (361)
46 KOG2982 Uncharacterized conser 98.4 8.3E-08 1.8E-12 93.1 1.8 208 112-319 41-262 (418)
47 KOG1859 Leucine-rich repeat pr 98.2 4.6E-08 9.9E-13 105.4 -5.8 122 141-269 166-289 (1096)
48 KOG1859 Leucine-rich repeat pr 98.2 4.3E-08 9.3E-13 105.6 -6.2 179 156-343 102-292 (1096)
49 KOG2120 SCF ubiquitin ligase, 98.1 2E-07 4.4E-12 90.5 -3.0 174 187-362 185-373 (419)
50 KOG2120 SCF ubiquitin ligase, 98.0 2.5E-07 5.5E-12 89.9 -4.8 176 164-341 186-374 (419)
51 COG5238 RNA1 Ran GTPase-activa 97.9 8.4E-06 1.8E-10 78.5 4.0 111 235-345 157-287 (388)
52 KOG4579 Leucine-rich repeat (L 97.9 6.7E-07 1.5E-11 77.1 -3.4 104 94-200 29-136 (177)
53 KOG4579 Leucine-rich repeat (L 97.9 8.8E-07 1.9E-11 76.4 -3.1 104 141-248 29-136 (177)
54 KOG2982 Uncharacterized conser 97.8 4.1E-06 8.9E-11 81.6 -0.5 107 141-247 47-158 (418)
55 PF12799 LRR_4: Leucine Rich r 97.8 2.4E-05 5.1E-10 54.8 3.4 36 307-343 2-37 (44)
56 COG5238 RNA1 Ran GTPase-activa 97.7 3.6E-05 7.7E-10 74.3 3.7 158 207-364 88-284 (388)
57 PRK15386 type III secretion pr 97.6 0.00018 3.8E-09 75.6 8.5 32 282-316 156-187 (426)
58 PRK15386 type III secretion pr 97.6 0.00033 7.2E-09 73.6 9.9 74 112-198 48-123 (426)
59 KOG3593 Predicted receptor-lik 97.6 4.2E-05 9E-10 73.7 2.9 121 415-566 61-184 (355)
60 PF12799 LRR_4: Leucine Rich r 97.6 6.6E-05 1.4E-09 52.5 3.0 38 282-320 1-38 (44)
61 KOG1644 U2-associated snRNP A' 97.5 0.00019 4E-09 66.6 5.4 82 141-224 44-126 (233)
62 KOG1644 U2-associated snRNP A' 97.3 0.00037 8E-09 64.7 5.4 124 141-268 21-149 (233)
63 KOG3665 ZYG-1-like serine/thre 97.1 0.00024 5.2E-09 80.9 2.7 129 141-271 124-262 (699)
64 KOG3665 ZYG-1-like serine/thre 97.0 0.00049 1.1E-08 78.4 3.5 104 163-268 122-229 (699)
65 PF12819 Malectin_like: Carboh 97.0 0.0056 1.2E-07 64.5 11.2 98 482-584 45-148 (347)
66 PF13306 LRR_5: Leucine rich r 96.8 0.0019 4.1E-08 57.4 5.3 59 111-171 7-66 (129)
67 PF13306 LRR_5: Leucine rich r 96.6 0.0031 6.7E-08 56.0 5.4 105 135-244 7-112 (129)
68 KOG2739 Leucine-rich acidic nu 96.5 0.0017 3.8E-08 62.9 2.8 42 159-200 61-104 (260)
69 PF08263 LRRNT_2: Leucine rich 96.4 0.005 1.1E-07 42.8 4.1 35 37-86 1-43 (43)
70 KOG2739 Leucine-rich acidic nu 96.2 0.0026 5.7E-08 61.8 2.2 61 186-248 42-104 (260)
71 KOG2123 Uncharacterized conser 95.5 0.00077 1.7E-08 65.6 -4.7 80 160-241 38-123 (388)
72 TIGR00864 PCC polycystin catio 95.4 0.0084 1.8E-07 75.6 2.8 66 337-416 2-70 (2740)
73 KOG2123 Uncharacterized conser 95.2 0.0018 3.9E-08 63.1 -3.1 100 162-265 18-123 (388)
74 KOG0196 Tyrosine kinase, EPH ( 94.8 0.026 5.6E-07 62.9 3.8 35 664-698 608-651 (996)
75 KOG4308 LRR-containing protein 93.9 0.00082 1.8E-08 73.3 -10.1 61 284-344 235-304 (478)
76 KOG3653 Transforming growth fa 93.8 0.0086 1.9E-07 62.8 -2.2 19 681-699 215-233 (534)
77 PLN03224 probable serine/threo 93.7 0.026 5.7E-07 62.3 1.3 24 674-697 143-166 (507)
78 PF00560 LRR_1: Leucine Rich R 93.3 0.02 4.3E-07 33.3 -0.3 6 335-340 5-10 (22)
79 KOG4341 F-box protein containi 92.9 0.0085 1.8E-07 61.9 -3.9 250 92-343 138-414 (483)
80 PF00560 LRR_1: Leucine Rich R 92.1 0.065 1.4E-06 31.0 0.7 12 308-319 2-13 (22)
81 KOG1947 Leucine rich repeat pr 92.0 0.053 1.2E-06 60.1 0.6 139 185-332 241-389 (482)
82 KOG1025 Epidermal growth facto 91.6 0.043 9.4E-07 61.5 -0.7 17 681-697 701-717 (1177)
83 PLN03225 Serine/threonine-prot 91.2 0.077 1.7E-06 60.0 0.8 25 674-698 130-154 (566)
84 KOG4308 LRR-containing protein 90.7 0.0067 1.4E-07 66.3 -8.0 180 94-273 89-304 (478)
85 KOG0473 Leucine-rich repeat pr 90.4 0.0087 1.9E-07 56.9 -6.3 84 111-197 37-121 (326)
86 PF13504 LRR_7: Leucine rich r 90.2 0.18 4E-06 27.1 1.3 13 307-319 2-14 (17)
87 smart00370 LRR Leucine-rich re 89.3 0.35 7.7E-06 29.2 2.3 20 330-350 2-21 (26)
88 smart00369 LRR_TYP Leucine-ric 89.3 0.35 7.7E-06 29.2 2.3 20 330-350 2-21 (26)
89 KOG0473 Leucine-rich repeat pr 89.0 0.0096 2.1E-07 56.6 -7.2 88 158-248 37-124 (326)
90 smart00370 LRR Leucine-rich re 88.3 0.48 1E-05 28.6 2.4 22 305-326 1-22 (26)
91 smart00369 LRR_TYP Leucine-ric 88.3 0.48 1E-05 28.6 2.4 22 305-326 1-22 (26)
92 KOG0193 Serine/threonine prote 84.7 0.39 8.4E-06 52.4 0.9 26 666-698 389-414 (678)
93 KOG3864 Uncharacterized conser 84.2 0.45 9.7E-06 44.8 1.0 37 92-128 101-137 (221)
94 KOG1024 Receptor-like protein 81.6 5.3 0.00012 41.6 7.5 31 668-698 276-306 (563)
95 PTZ00284 protein kinase; Provi 81.3 0.39 8.4E-06 53.2 -0.7 30 668-697 121-150 (467)
96 KOG1947 Leucine rich repeat pr 81.2 0.52 1.1E-05 52.2 0.3 12 305-316 294-305 (482)
97 KOG0194 Protein tyrosine kinas 77.9 1.1 2.4E-05 48.6 1.5 18 681-698 162-179 (474)
98 KOG3864 Uncharacterized conser 77.6 0.43 9.3E-06 44.9 -1.5 34 236-269 102-135 (221)
99 smart00082 LRRCT Leucine rich 77.3 1.1 2.3E-05 32.2 0.8 36 370-411 1-36 (51)
100 PF13516 LRR_6: Leucine Rich r 76.3 0.47 1E-05 28.0 -1.1 13 307-319 3-15 (24)
101 KOG4258 Insulin/growth factor 74.5 1.7 3.8E-05 49.2 1.9 19 681-699 999-1017(1025)
102 PF04478 Mid2: Mid2 like cell 74.5 1.5 3.2E-05 39.2 1.1 12 675-686 111-122 (154)
103 PRK09605 bifunctional UGMP fam 73.9 1.3 2.8E-05 50.0 0.7 33 666-698 323-355 (535)
104 PTZ00036 glycogen synthase kin 73.7 1.3 2.8E-05 48.6 0.7 24 675-698 65-88 (440)
105 cd05622 STKc_ROCK1 Catalytic d 73.6 1.2 2.5E-05 47.7 0.3 33 666-698 33-65 (371)
106 cd05106 PTKc_CSF-1R Catalytic 71.7 1.7 3.8E-05 46.4 1.1 20 677-696 39-58 (374)
107 KOG0663 Protein kinase PITSLRE 71.3 1.8 3.9E-05 44.1 0.9 16 681-696 81-96 (419)
108 cd05105 PTKc_PDGFR_alpha Catal 70.6 2.1 4.6E-05 46.3 1.4 18 680-697 41-58 (400)
109 PHA03211 serine/threonine kina 70.6 2.1 4.5E-05 47.2 1.4 24 675-698 168-191 (461)
110 cd05621 STKc_ROCK2 Catalytic d 70.6 1.5 3.2E-05 46.9 0.2 31 668-698 35-65 (370)
111 KOG1035 eIF-2alpha kinase GCN2 70.3 1.4 3.1E-05 52.2 -0.0 24 673-696 476-499 (1351)
112 smart00365 LRR_SD22 Leucine-ri 68.8 4.3 9.3E-05 24.6 1.8 14 306-319 2-15 (26)
113 cd05596 STKc_ROCK Catalytic do 67.7 1.3 2.8E-05 47.3 -1.0 27 672-698 39-65 (370)
114 PHA03209 serine/threonine kina 66.3 3.1 6.7E-05 44.1 1.6 26 673-698 63-88 (357)
115 smart00364 LRR_BAC Leucine-ric 66.1 4 8.7E-05 24.7 1.3 17 331-348 3-19 (26)
116 cd05107 PTKc_PDGFR_beta Cataly 65.9 2.8 6.1E-05 45.3 1.2 20 678-697 39-58 (401)
117 KOG0192 Tyrosine kinase specif 65.3 3 6.5E-05 44.2 1.2 18 681-698 46-63 (362)
118 PHA03210 serine/threonine kina 65.2 3.1 6.7E-05 46.5 1.4 23 675-697 147-169 (501)
119 KOG4257 Focal adhesion tyrosin 63.4 3.3 7.2E-05 45.7 1.1 19 681-699 394-412 (974)
120 KOG1095 Protein tyrosine kinas 63.2 3.8 8.1E-05 48.7 1.6 20 681-700 697-716 (1025)
121 KOG4242 Predicted myosin-I-bin 60.5 24 0.00052 37.9 6.6 108 91-200 164-281 (553)
122 PF04478 Mid2: Mid2 like cell 60.5 13 0.00028 33.3 4.1 14 614-627 44-57 (154)
123 PLN00034 mitogen-activated pro 59.0 4.4 9.5E-05 42.8 1.1 18 681-698 79-96 (353)
124 KOG1167 Serine/threonine prote 58.6 2.9 6.4E-05 43.7 -0.3 27 671-697 31-57 (418)
125 KOG0986 G protein-coupled rece 57.9 4 8.7E-05 43.3 0.6 27 670-696 178-205 (591)
126 KOG4341 F-box protein containi 57.1 4.5 9.7E-05 42.5 0.7 129 141-269 296-436 (483)
127 KOG0600 Cdc2-related protein k 56.8 2.9 6.2E-05 45.0 -0.7 15 682-696 123-137 (560)
128 smart00368 LRR_RI Leucine rich 56.3 9.4 0.0002 23.5 1.8 14 306-319 2-15 (28)
129 PHA03212 serine/threonine kina 49.0 7.4 0.00016 41.9 0.9 22 676-697 92-113 (391)
130 KOG1166 Mitotic checkpoint ser 48.6 7 0.00015 46.4 0.6 29 670-698 692-720 (974)
131 KOG2052 Activin A type IB rece 48.0 18 0.00039 38.5 3.4 18 681-698 216-233 (513)
132 KOG3763 mRNA export factor TAP 47.9 9.9 0.00021 41.5 1.6 62 282-345 218-285 (585)
133 PF14575 EphA2_TM: Ephrin type 46.7 1.1 2.4E-05 35.3 -4.3 15 665-679 56-70 (75)
134 KOG0605 NDR and related serine 46.3 11 0.00024 40.9 1.6 24 674-697 139-162 (550)
135 KOG3763 mRNA export factor TAP 43.5 14 0.0003 40.5 1.8 40 282-321 244-285 (585)
136 KOG1026 Nerve growth factor re 43.3 7.1 0.00015 44.7 -0.4 19 681-699 491-509 (774)
137 PF14610 DUF4448: Protein of u 40.0 2.4E+02 0.0051 26.7 9.6 23 497-519 40-62 (189)
138 PF02480 Herpes_gE: Alphaherpe 39.3 37 0.00081 36.9 4.4 16 528-543 279-294 (439)
139 PF15102 TMEM154: TMEM154 prot 37.0 25 0.00055 31.4 2.2 8 666-673 125-132 (146)
140 PHA03207 serine/threonine kina 36.5 16 0.00035 39.2 1.1 21 677-697 93-113 (392)
141 PRK13617 psbV cytochrome c-550 36.1 34 0.00073 31.6 2.9 25 1-25 1-25 (170)
142 TIGR01982 UbiB 2-polyprenylphe 34.4 21 0.00046 39.0 1.6 23 676-699 118-140 (437)
143 PHA03281 envelope glycoprotein 32.5 72 0.0016 34.8 5.0 26 512-543 475-500 (642)
144 TIGR01624 LRP1_Cterm LRP1 C-te 32.1 28 0.00061 24.4 1.3 14 682-699 34-47 (50)
145 KOG1151 Tousled-like protein k 31.9 8 0.00017 40.9 -2.0 32 665-696 438-483 (775)
146 PTZ00382 Variant-specific surf 30.3 60 0.0013 27.0 3.2 7 620-626 70-76 (96)
147 KOG4236 Serine/threonine prote 28.1 23 0.0005 38.6 0.5 18 678-696 567-584 (888)
148 PF06697 DUF1191: Protein of u 26.9 31 0.00066 34.6 1.1 13 619-631 213-225 (278)
149 KOG0584 Serine/threonine prote 26.7 27 0.00058 38.9 0.7 16 681-696 45-60 (632)
150 KOG1006 Mitogen-activated prot 26.1 20 0.00044 35.6 -0.3 25 665-696 60-84 (361)
151 KOG0694 Serine/threonine prote 24.7 33 0.00071 38.7 0.9 22 676-697 368-389 (694)
152 PTZ00267 NIMA-related protein 22.1 41 0.00089 37.3 1.1 19 678-696 69-87 (478)
153 KOG0197 Tyrosine kinases [Sign 22.0 42 0.00091 36.4 1.1 19 681-699 211-229 (468)
154 KOG4279 Serine/threonine prote 21.4 39 0.00085 38.3 0.7 18 679-696 578-595 (1226)
155 KOG0581 Mitogen-activated prot 20.4 70 0.0015 33.3 2.2 26 665-697 75-100 (364)
156 PHA03283 envelope glycoprotein 20.2 4E+02 0.0087 29.3 7.8 27 512-544 315-341 (542)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.6e-39 Score=390.78 Aligned_cols=318 Identities=31% Similarity=0.539 Sum_probs=215.5
Q ss_pred CHHHHHHHHHHHHhcCC-----CCCCCCCCCCCCCCCCcccCCCCCCCCCCeeeCCCCCcCcEEEEEecCCCCCCcCchh
Q 005361 37 HAEEVKALKQIGRKLGK-----KDWNFGVDPCSQKGNWELSSDDKKGFESNVTCDCSSATCHVVTIALKAQNLTGTLPTE 111 (700)
Q Consensus 37 ~~~e~~al~~l~~~~~~-----~~w~~~~d~C~~~~~w~~~~~~~~~~~~~v~C~~~~~~~~v~~L~L~~~~l~~~~~~~ 111 (700)
+++|++||.++++.+.. ..|....++| .| .||+|+. .++|+.|+|+++.+++.++..
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c----~w-----------~gv~c~~---~~~v~~L~L~~~~i~~~~~~~ 88 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSSADVC----LW-----------QGITCNN---SSRVVSIDLSGKNISGKISSA 88 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCC----cC-----------cceecCC---CCcEEEEEecCCCccccCChH
Confidence 66899999999999853 4687777888 78 7999974 468999999999999999999
Q ss_pred hcCCCCCCEEECcCCCCCCCcccccc-ccc-ccEEEccCCCCCC----------------------CCchhcCCCCCCCE
Q 005361 112 LSKLRYLKQLDLSRNCLTGSFSPQWA-SLQ-LVELSVMGNRLSG----------------------PFPKVLTNITTLKN 167 (700)
Q Consensus 112 l~~l~~L~~L~L~~n~l~~~~~~~~~-~l~-L~~L~L~~n~l~~----------------------~~p~~~~~l~~L~~ 167 (700)
|..+++|+.|+|++|.+.+.+|..+. .++ |++|+|++|.+++ .+|..++++++|++
T Consensus 89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 168 (968)
T PLN00113 89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV 168 (968)
T ss_pred HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCE
Confidence 99999999999999999877665543 444 6666666665554 44444555555555
Q ss_pred EEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCC
Q 005361 168 LSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSL 247 (700)
Q Consensus 168 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 247 (700)
|+|++|.+.+.+|..++++++|++|+|++|.+.+.+|..+..+++|++|+|++|.+++.+|..++.+++|+.|++++|.+
T Consensus 169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 248 (968)
T PLN00113 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248 (968)
T ss_pred EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCcee
Confidence 55555555555555555555555555555555555555555555555555555555555555555556666666666655
Q ss_pred CCCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhH
Q 005361 248 EGPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTF 326 (700)
Q Consensus 248 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 326 (700)
.+.+|..+.++++|+.|++++|.+.......+.. .+|+.|+|++|.+++.+|..+..+++|+.|+|++|.+.+.+|..+
T Consensus 249 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~ 328 (968)
T PLN00113 249 TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL 328 (968)
T ss_pred ccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH
Confidence 5555555666666666666655444332223333 667777777777776677767777777777777777777777777
Q ss_pred hcCCCCCEEEccCCcCCCCCchhhh--cCCCeeeeecCcccccCCCCC
Q 005361 327 EKLAKTNFMYLTGNKLTGPVPKYIF--NSNKNVDISLNNFTWESSDPI 372 (700)
Q Consensus 327 ~~l~~L~~L~L~~N~l~~~ip~~~~--~~l~~L~ls~N~l~~~~p~~~ 372 (700)
..+++|+.|+|++|++++.+|..+. .+++.|++++|.+++.+|..+
T Consensus 329 ~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~ 376 (968)
T PLN00113 329 TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL 376 (968)
T ss_pred hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH
Confidence 7777777777777777777776553 356777777777777777655
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=5.4e-30 Score=308.42 Aligned_cols=279 Identities=31% Similarity=0.479 Sum_probs=171.3
Q ss_pred CcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEc
Q 005361 92 CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSI 170 (700)
Q Consensus 92 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 170 (700)
.+++.|+|++|++++.+|. ..+++|++|+|++|.+.+.+|..+..++ |++|+|++|.+.+.+|..+.++++|++|+|
T Consensus 118 ~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred CCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 4566777777766665554 3466666666666666666666666665 666666666666666666666666666666
Q ss_pred cCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCC
Q 005361 171 EGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGP 250 (700)
Q Consensus 171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 250 (700)
++|.+.+.+|..++.+++|+.|+|++|.+++.+|..+..+++|++|++++|.+++.+|..++.+++|+.|+|++|.+.+.
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 275 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP 275 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred chhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcC
Q 005361 251 IPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKL 329 (700)
Q Consensus 251 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 329 (700)
+|..+.++++|+.|++++|.+.......+.. ++|+.|++++|.+++.+|..+..+++|+.|+|++|.+++.+|..+..+
T Consensus 276 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~ 355 (968)
T PLN00113 276 IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH 355 (968)
T ss_pred CchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCC
Confidence 6666666666666666665544332222333 566666666666666666666666666666666666666666666666
Q ss_pred CCCCEEEccCCcCCCCCchhhhc--CCCeeeeecCcccccCCCCC
Q 005361 330 AKTNFMYLTGNKLTGPVPKYIFN--SNKNVDISLNNFTWESSDPI 372 (700)
Q Consensus 330 ~~L~~L~L~~N~l~~~ip~~~~~--~l~~L~ls~N~l~~~~p~~~ 372 (700)
++|+.|+|++|++++.+|..++. +++.|++++|++.+.+|..+
T Consensus 356 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~ 400 (968)
T PLN00113 356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL 400 (968)
T ss_pred CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHH
Confidence 66666666666666555555432 44555555555555555433
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=4.6e-31 Score=271.36 Aligned_cols=316 Identities=18% Similarity=0.203 Sum_probs=199.1
Q ss_pred cEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEcc
Q 005361 93 HVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIE 171 (700)
Q Consensus 93 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 171 (700)
-++.|||+.|.|+....+.|..=.+|++|+|++|.|+......|..+. |.+|.|+.|+++...+..|.+|++|+.|+|.
T Consensus 150 alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLn 229 (873)
T KOG4194|consen 150 ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLN 229 (873)
T ss_pred hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcc
Confidence 467777777777766666666667777778877777777777777777 7777777777776666677777777777777
Q ss_pred CCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCc
Q 005361 172 GNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPI 251 (700)
Q Consensus 172 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 251 (700)
.|+|.-.---.|.+|++|+.|.|..|.+...-...|..+.++++|+|+.|+++..-..++.++++|+.|+|++|.|....
T Consensus 230 rN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih 309 (873)
T KOG4194|consen 230 RNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH 309 (873)
T ss_pred ccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheee
Confidence 77766332445666666666666666666555555666666666666666666555556666666666666666666666
Q ss_pred hhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCCh---hhHh
Q 005361 252 PASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIP---TTFE 327 (700)
Q Consensus 252 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~ 327 (700)
++.+...++|+.|+|+.|.+.......+.. ..|++|+|++|.++..-...|..+++|++|||++|.|+..+. ..|.
T Consensus 310 ~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~ 389 (873)
T KOG4194|consen 310 IDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFN 389 (873)
T ss_pred cchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhc
Confidence 666666666666666666655554444444 555666666666554444455555666666666665554332 2355
Q ss_pred cCCCCCEEEccCCcCCCCCchhhh---cCCCeeeeecCcccccCC---------------CCCCCCCCCccceecccCCC
Q 005361 328 KLAKTNFMYLTGNKLTGPVPKYIF---NSNKNVDISLNNFTWESS---------------DPIECPRGSVNLVESYSSPR 389 (700)
Q Consensus 328 ~l~~L~~L~L~~N~l~~~ip~~~~---~~l~~L~ls~N~l~~~~p---------------~~~~C~~~~~~~~~~~~~~~ 389 (700)
.++.|+.|+|.+|++. .||...+ +.|+.|||.+|.+-..-| .++.|||...|+..|+....
T Consensus 390 gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl~~~~ 468 (873)
T KOG4194|consen 390 GLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWLYRRK 468 (873)
T ss_pred cchhhhheeecCceee-ecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHHHHHHhcc
Confidence 5555666666666655 4444333 244555555555432222 25669999999999987553
Q ss_pred CCCCCcccccccCCCCCCCCCCcceee
Q 005361 390 NKLDKVHPCLRQNFPCSAPADQYHYTL 416 (700)
Q Consensus 390 ~~~~~~~~~~~~~~~c~~p~~~~~~~~ 416 (700)
-.- .-...|+.|+-..++.+
T Consensus 469 lq~-------sv~a~CayPe~Lad~~i 488 (873)
T KOG4194|consen 469 LQS-------SVIAKCAYPEPLADQSI 488 (873)
T ss_pred ccc-------ceeeeccCCccccccee
Confidence 221 23456888877665543
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=4.5e-29 Score=256.80 Aligned_cols=304 Identities=19% Similarity=0.232 Sum_probs=263.1
Q ss_pred CcCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccc-ccccEEEccCCCCCCCCchhcCCCCCCCEE
Q 005361 90 ATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWAS-LQLVELSVMGNRLSGPFPKVLTNITTLKNL 168 (700)
Q Consensus 90 ~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-l~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 168 (700)
..+|++.|+|.+|.|+..-..+++.++.|+.|||+.|.|+.+..+.|.. .++++|+|++|.|+..-...|.++.+|..|
T Consensus 123 ~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tl 202 (873)
T KOG4194|consen 123 ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTL 202 (873)
T ss_pred cccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheee
Confidence 4679999999999999888889999999999999999999877777766 459999999999998888889999999999
Q ss_pred EccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCC
Q 005361 169 SIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLE 248 (700)
Q Consensus 169 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 248 (700)
.|++|+++...+..|.+|++|+.|+|..|.|.-..-.+|.+|++|+.|.|..|.+...-...|-.+.+++.|+|+.|++.
T Consensus 203 kLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~ 282 (873)
T KOG4194|consen 203 KLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ 282 (873)
T ss_pred ecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh
Confidence 99999999776778889999999999999998444678999999999999999999777888999999999999999999
Q ss_pred CCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHh
Q 005361 249 GPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFE 327 (700)
Q Consensus 249 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 327 (700)
..-...+.+++.|+.|+++.|.+....+..+.. ++|+.|+|++|+|+...+..|..+..|++|.|++|.++.....+|.
T Consensus 283 ~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~ 362 (873)
T KOG4194|consen 283 AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV 362 (873)
T ss_pred hhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHH
Confidence 877788999999999999999999988888888 9999999999999988888999999999999999999988888999
Q ss_pred cCCCCCEEEccCCcCCCCCchhh-----hcCCCeeeeecCcccccCCCCCCCCCCCccceecccCCCCCCCCccc
Q 005361 328 KLAKTNFMYLTGNKLTGPVPKYI-----FNSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVHP 397 (700)
Q Consensus 328 ~l~~L~~L~L~~N~l~~~ip~~~-----~~~l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~~~~~~~~~~ 397 (700)
.+++|+.|||++|.++..|-+.. ++.|+.|+|.+|++....-..| ..++-++-+....|.+..+.+
T Consensus 363 ~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAf----sgl~~LE~LdL~~NaiaSIq~ 433 (873)
T KOG4194|consen 363 GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAF----SGLEALEHLDLGDNAIASIQP 433 (873)
T ss_pred HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhh----ccCcccceecCCCCcceeecc
Confidence 99999999999999987765432 3468899999998864332333 234455666666666665543
No 5
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.92 E-value=3.2e-27 Score=233.28 Aligned_cols=304 Identities=19% Similarity=0.210 Sum_probs=235.6
Q ss_pred CcCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccE-EEccCCCCCCCCchhcCCCCCCCE
Q 005361 90 ATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVE-LSVMGNRLSGPFPKVLTNITTLKN 167 (700)
Q Consensus 90 ~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~-L~L~~n~l~~~~p~~~~~l~~L~~ 167 (700)
-+...+.|+|..|.|+.+.+.+|+.+++|+.|||++|.|+.+-|.+|.++. |.. ++.++|+|+......|.+|..|+.
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR 144 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence 467899999999999999999999999999999999999999999999998 555 455559999777788999999999
Q ss_pred EEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCC------------CChhhhcCCC
Q 005361 168 LSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSG------------KIPEFIGKWK 235 (700)
Q Consensus 168 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------~~~~~l~~l~ 235 (700)
|.+.-|++.......|..+++|..|.+..|.+..+-..+|..+.+++.+.+..|.+.. ..|..++.+.
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 9999999998888889999999999999999984444488899999999998887421 2233444444
Q ss_pred cccEEEccCCCCCCCchhhhhcCCCCCEE--EcCCCCCCCCcccc--cCc-cCccEEEcccCCCCCCCchhhcCCCCCCE
Q 005361 236 KIQKLHIQGSSLEGPIPASISALTSLTDL--RISDLKGSESAFPK--LDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKN 310 (700)
Q Consensus 236 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L--~l~~n~~~~~~~~~--l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 310 (700)
...-..+.+.++....+..|... ++.+ .++.........|. +.. ++|++|+|++|+|+++-+.+|.++..+++
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~e 302 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQE 302 (498)
T ss_pred ecchHHHHHHHhcccchhhhhhh--HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhh
Confidence 44444455555543333333322 2222 12222222333333 555 89999999999999999999999999999
Q ss_pred EeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhh--cCCCeeeeecCcccccCCCCCCCCCCCccceecccCC
Q 005361 311 IDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF--NSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSP 388 (700)
Q Consensus 311 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~--~~l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~ 388 (700)
|.|..|+|.......|.++..|+.|+|.+|+|+..-|..+- ..+..|+|-.| +|.|+|...|+.+|++..
T Consensus 303 L~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~N--------p~~CnC~l~wl~~Wlr~~ 374 (498)
T KOG4237|consen 303 LYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSN--------PFNCNCRLAWLGEWLRKK 374 (498)
T ss_pred hhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccC--------cccCccchHHHHHHHhhC
Confidence 99999999977778999999999999999999954454442 25778888888 777999999999999987
Q ss_pred CCCCCCcccccccCCCCCCCCCCc
Q 005361 389 RNKLDKVHPCLRQNFPCSAPADQY 412 (700)
Q Consensus 389 ~~~~~~~~~~~~~~~~c~~p~~~~ 412 (700)
. . .++.+|+.|....
T Consensus 375 ~--~-------~~~~~Cq~p~~~~ 389 (498)
T KOG4237|consen 375 S--V-------VGNPRCQSPGFVR 389 (498)
T ss_pred C--C-------CCCCCCCCCchhc
Confidence 5 1 2567788776544
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=2.9e-25 Score=230.07 Aligned_cols=257 Identities=26% Similarity=0.337 Sum_probs=135.7
Q ss_pred hhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCC
Q 005361 110 TELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLIN 188 (700)
Q Consensus 110 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 188 (700)
+.+..|..|+.|||++|++. ..|..+...+ +-+|+|++|+|..+.-.-|.+|..|-+|||++|++. .+|+....|.+
T Consensus 97 ~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~ 174 (1255)
T KOG0444|consen 97 TDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSM 174 (1255)
T ss_pred chhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhh
Confidence 33444444444444444444 2233333333 444444444444222222334444444444444443 33444444444
Q ss_pred ccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCC-CCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcC
Q 005361 189 LQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFS-GKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRIS 267 (700)
Q Consensus 189 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 267 (700)
|++|+|++|.+....-..+..+++|+.|.+++.+-+ ..+|.++..+.+|..+|++.|.+. .+|+.+.++++|+.|+|+
T Consensus 175 LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS 253 (1255)
T KOG0444|consen 175 LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLS 253 (1255)
T ss_pred hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccC
Confidence 444444444433211122222333333344333221 245666777777777777777777 677777778888888888
Q ss_pred CCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCC------------------------CCh
Q 005361 268 DLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTG------------------------GIP 323 (700)
Q Consensus 268 ~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~------------------------~~p 323 (700)
+|.++......-.-.+|++|+|+.|+++ .+|+.+..+++|+.|.+.+|+++- ..|
T Consensus 254 ~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVP 332 (1255)
T KOG0444|consen 254 GNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVP 332 (1255)
T ss_pred cCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCc
Confidence 7776654433322256777777777776 566666666666666666655541 455
Q ss_pred hhHhcCCCCCEEEccCCcCCCCCchhh--hcCCCeeeeecCcccccCCCC
Q 005361 324 TTFEKLAKTNFMYLTGNKLTGPVPKYI--FNSNKNVDISLNNFTWESSDP 371 (700)
Q Consensus 324 ~~~~~l~~L~~L~L~~N~l~~~ip~~~--~~~l~~L~ls~N~l~~~~p~~ 371 (700)
+.+..++.|+.|.|+.|++. ++|+.+ .+.++.||+..|+-.--.|.|
T Consensus 333 EglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 333 EGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKP 381 (1255)
T ss_pred hhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCc
Confidence 55666666666666666666 566654 345667777777644334433
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=1.1e-24 Score=225.82 Aligned_cols=266 Identities=23% Similarity=0.331 Sum_probs=196.0
Q ss_pred cEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCC-CCchhcCCCCCCCEEEc
Q 005361 93 HVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSG-PFPKVLTNITTLKNLSI 170 (700)
Q Consensus 93 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L 170 (700)
+++-|.|....+. .+|..++.+.+|++|.+++|++... ...+..++ |+.+.+..|++.. -+|..+..|..|..|||
T Consensus 33 ~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDL 110 (1255)
T KOG0444|consen 33 QMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDL 110 (1255)
T ss_pred heeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHhhhccccccCCCCchhcccccceeeec
Confidence 5677777766665 5677788888888888888877733 34455666 8888888887752 35666777888888888
Q ss_pred cCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCC
Q 005361 171 EGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGP 250 (700)
Q Consensus 171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 250 (700)
++|++. ..|..+..-+++-.|+|++|+|..+...-|.+|..|-.|||++|++. .+|..+..+..|+.|+|++|.+...
T Consensus 111 ShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hf 188 (1255)
T KOG0444|consen 111 SHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHF 188 (1255)
T ss_pred chhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHH
Confidence 888887 67777777788888888888887444455677888888888888887 5566677788888888888877643
Q ss_pred chhhhhcCCCCCEEEcCCCCCCCCcccc-cCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhc
Q 005361 251 IPASISALTSLTDLRISDLKGSESAFPK-LDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEK 328 (700)
Q Consensus 251 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~-l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 328 (700)
--..+-.+++|+.|.+++.+.+...+|. +.. .+|..+||+.|.+. .+|+.+..+++|+.|+||+|+|+ .+.-....
T Consensus 189 QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~ 266 (1255)
T KOG0444|consen 189 QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGE 266 (1255)
T ss_pred HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHH
Confidence 3333445666777777776666555655 444 78888888888888 78888888888888888888888 44445566
Q ss_pred CCCCCEEEccCCcCCCCCchhhhc--CCCeeeeecCccc
Q 005361 329 LAKTNFMYLTGNKLTGPVPKYIFN--SNKNVDISLNNFT 365 (700)
Q Consensus 329 l~~L~~L~L~~N~l~~~ip~~~~~--~l~~L~ls~N~l~ 365 (700)
..+|++|+|+.|+++ .+|..++. .++.|.+.+|+++
T Consensus 267 W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 267 WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLT 304 (1255)
T ss_pred Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCccc
Confidence 678888888888888 78888764 6777888888754
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.83 E-value=3.2e-23 Score=205.28 Aligned_cols=260 Identities=24% Similarity=0.363 Sum_probs=225.7
Q ss_pred EEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccC
Q 005361 94 VVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEG 172 (700)
Q Consensus 94 v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 172 (700)
+..+.+++|++.. +.+.+.++..|.+|++.+|++.. .|++++.+. ++.|+.++|+++ .+|+.++.+.+|+.|++++
T Consensus 47 l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 47 LQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred hhhhhhccCchhh-ccHhhhcccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccc
Confidence 6778899999874 55568999999999999999995 455666666 999999999998 7888999999999999999
Q ss_pred CcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCch
Q 005361 173 NLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIP 252 (700)
Q Consensus 173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 252 (700)
|.+. .+|+.++.+..|+.|+..+|+++ ..|..+..+.+|..|++.+|++....|+.+. ++.|++|+...|.+. .+|
T Consensus 124 n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP 199 (565)
T KOG0472|consen 124 NELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLP 199 (565)
T ss_pred ccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCC
Confidence 9998 77889999999999999999999 7888899999999999999999976666666 999999999999988 788
Q ss_pred hhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCch-hhcCCCCCCEEeccCCCCCCCChhhHhcCC
Q 005361 253 ASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPD-YIGDMTKLKNIDLSFNNLTGGIPTTFEKLA 330 (700)
Q Consensus 253 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 330 (700)
+.++.+.+|..|++..|.+... |.+.. ..|.+|+++.|+|. .+|. ....+++|..|||..|+++ ..|+.+.-+.
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~~l--Pef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLr 275 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIRFL--PEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLR 275 (565)
T ss_pred hhhcchhhhHHHHhhhcccccC--CCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhh
Confidence 8999999999999999887654 46666 88999999999998 5555 4558999999999999999 7888889999
Q ss_pred CCCEEEccCCcCCCCCchhhhc-CCCeeeeecCccc
Q 005361 331 KTNFMYLTGNKLTGPVPKYIFN-SNKNVDISLNNFT 365 (700)
Q Consensus 331 ~L~~L~L~~N~l~~~ip~~~~~-~l~~L~ls~N~l~ 365 (700)
+|++||+++|.++ .+|.++.+ +++.|-+.+|++-
T Consensus 276 sL~rLDlSNN~is-~Lp~sLgnlhL~~L~leGNPlr 310 (565)
T KOG0472|consen 276 SLERLDLSNNDIS-SLPYSLGNLHLKFLALEGNPLR 310 (565)
T ss_pred hhhhhcccCCccc-cCCcccccceeeehhhcCCchH
Confidence 9999999999999 66766644 6788889999764
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.82 E-value=2.7e-22 Score=198.69 Aligned_cols=81 Identities=22% Similarity=0.484 Sum_probs=55.7
Q ss_pred cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChh------------------------hHhcCCCCCEEEc
Q 005361 282 MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPT------------------------TFEKLAKTNFMYL 337 (700)
Q Consensus 282 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~------------------------~~~~l~~L~~L~L 337 (700)
++|..|+|++|-+. .+|..++.+..|+.||||+|++. .+|. .+.++.+|..|||
T Consensus 435 ~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL 512 (565)
T KOG0472|consen 435 QKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDL 512 (565)
T ss_pred hcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceecc
Confidence 56777888877776 66777777777888888777665 3333 3566677777777
Q ss_pred cCCcCCCCCchhhh--cCCCeeeeecCccc
Q 005361 338 TGNKLTGPVPKYIF--NSNKNVDISLNNFT 365 (700)
Q Consensus 338 ~~N~l~~~ip~~~~--~~l~~L~ls~N~l~ 365 (700)
.+|.+. .+|+.+. .+++.|++++|+|.
T Consensus 513 ~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 513 QNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred CCCchh-hCChhhccccceeEEEecCCccC
Confidence 777776 6666653 36677777777665
No 10
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=99.79 E-value=2.2e-19 Score=168.36 Aligned_cols=167 Identities=41% Similarity=0.660 Sum_probs=103.9
Q ss_pred eeEEeeCCcce-ecCCceeecCccCCcccc-ceecCCceEEeeeecccCCCCCCCcceEecccccccccccchhhhhhhc
Q 005361 415 TLHINCGGAKI-NTGHTKYEADMEARGASM-FYSSGQYWAFSSTGKFMDDDTDLDNYIRTNTSTLSKVSAVDLELYRTAR 492 (700)
Q Consensus 415 ~~~~~c~~~~~-~~~~~~~~~~~~~~g~s~-~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~tar 492 (700)
.+++|||++.. ...+..|++|....+.+. |..+ ..... + ..........+.++.||+|+|
T Consensus 2 ~~~IN~Gg~~~~~~~g~~w~~D~~~~~g~~~y~~~-------~~~~~---------~--~~~~~~~i~~t~d~~Lyqt~R 63 (174)
T PF11721_consen 2 VLRINAGGPAYTDSSGIVWEADQYYTGGSWGYYVS-------SDNNG---------S--TSSTNSSIPGTTDDPLYQTER 63 (174)
T ss_dssp EEEEEETSSSEEETTTEEE-SSSSSTTSS---------------------------S--STTS--TTS-HHHHHTTT---
T ss_pred EEEEECCCCcccCCCCCEEcCCCCCCCCCcccccc-------ccccc---------c--cccccccccCCCchhhhHhhc
Confidence 57899999877 567789999986544443 2221 00000 0 000111112278899999999
Q ss_pred cCCccceEEEeeecCcceEEEEEeEEEEecCCCccccCCeEEEEEEecceecccccccchhcCCcCccEEEee-EEEecC
Q 005361 493 VSPLSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQEKLVKKDFNIEDEAGGTGIPIVKNF-PAEVTS 571 (700)
Q Consensus 493 ~~~~~lt~~~~~~~~~~y~vrlhF~ei~~~~~~~~~~~~~rvF~iyI~~~~~~~~~di~~~~~~~~~p~~~df-~v~~~~ 571 (700)
.++.+++|.+++.++|.|.|+|||+|+...........|+|+|||+|+++++.++|||...+|+...|+++.| .+.+++
T Consensus 64 ~g~~~f~Y~ip~~~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~d 143 (174)
T PF11721_consen 64 YGPSSFSYDIPVVPNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGFNKAAVRRFFNVTVTD 143 (174)
T ss_dssp --SSSEEEEEE--S-EEEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHSSSS---EEEEEEEEEET
T ss_pred CCCCceEEEEecCCCcEEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcCCCceEEEEEEEEEEEeC
Confidence 9988999999999999999999999996654344456999999999999999999999999999887777777 899999
Q ss_pred CccEEEEEEccCcccccCCCCCCC-Cccc
Q 005361 572 HTLKIHLYWAGRGTTGIPLRGTYG-PLIS 599 (700)
Q Consensus 572 ~~~~i~~~~~~~~~~~~~~~~~~g-p~i~ 599 (700)
+.+.|.+.|+.++.+.++.....+ |.++
T Consensus 144 g~L~i~f~~~~~~~~~i~~~~~~~~p~Is 172 (174)
T PF11721_consen 144 GTLNIQFVWAGKGTLCIPFIGSYGNPLIS 172 (174)
T ss_dssp TEEETTEEEE--SEEEEEEESSSSSSSEE
T ss_pred CcEEEEEEecCCCcEEeeccccCCCcEEe
Confidence 999999999998887766544444 5544
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=4.6e-18 Score=192.47 Aligned_cols=309 Identities=22% Similarity=0.249 Sum_probs=204.9
Q ss_pred cCCCCHHHHHHHHHHHHhcCC--------CCCCCCCCCCCCCCCCc-ccCCCCCCCCCCeeeCCCCCcCcEEEEEecCCC
Q 005361 33 ANKLHAEEVKALKQIGRKLGK--------KDWNFGVDPCSQKGNWE-LSSDDKKGFESNVTCDCSSATCHVVTIALKAQN 103 (700)
Q Consensus 33 ~~~~~~~e~~al~~l~~~~~~--------~~w~~~~d~C~~~~~w~-~~~~~~~~~~~~v~C~~~~~~~~v~~L~L~~~~ 103 (700)
..++.++|.+++.++.+.+.. ..|....+.|....+=. --.-..+.....|.|. ..+|+.+..-+..
T Consensus 57 ~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~----~~~vt~l~~~g~~ 132 (754)
T PRK15370 57 PETASPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGG----GKSVTYTRVTESE 132 (754)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCchhhccccccCCCCcccccCCcchhhheeeecCCceEEecC----CCccccccccccc
Confidence 456788999999999998854 23777788885322000 0000000011225553 2456665554321
Q ss_pred CCCc---------------------Cc-------hhh-----cCCCCCCEEECcCCCCCCCcccccccccccEEEccCCC
Q 005361 104 LTGT---------------------LP-------TEL-----SKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNR 150 (700)
Q Consensus 104 l~~~---------------------~~-------~~l-----~~l~~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~ 150 (700)
.... .+ .++ .-..+...|+++++.++.. |..+. ..|+.|+|++|.
T Consensus 133 ~~~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~LtsL-P~~Ip-~~L~~L~Ls~N~ 210 (754)
T PRK15370 133 QASSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLTTI-PACIP-EQITTLILDNNE 210 (754)
T ss_pred ccccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcCcC-Ccccc-cCCcEEEecCCC
Confidence 1100 00 001 1124577889988888853 43321 138899999999
Q ss_pred CCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhh
Q 005361 151 LSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEF 230 (700)
Q Consensus 151 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 230 (700)
++ .+|..+. ++|++|+|++|+++ .+|..+. .+|+.|+|++|.+. .+|..+. .+|+.|++++|+++ .+|..
T Consensus 211 Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~ 280 (754)
T PRK15370 211 LK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPEN 280 (754)
T ss_pred CC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccc
Confidence 88 4555543 48999999999888 5666553 47899999999888 5676654 57899999999888 45655
Q ss_pred hcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCE
Q 005361 231 IGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKN 310 (700)
Q Consensus 231 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 310 (700)
+. ++|+.|+|++|.++. +|..+. ++|+.|++++|.+... |....++|+.|++++|.+++ +|..+. ++|+.
T Consensus 281 l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~L--P~~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~ 350 (754)
T PRK15370 281 LP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTAL--PETLPPGLKTLEAGENALTS-LPASLP--PELQV 350 (754)
T ss_pred cC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccC--CccccccceeccccCCcccc-CChhhc--CcccE
Confidence 43 478999999998884 444332 4688888888777643 22122688899999998885 555443 68999
Q ss_pred EeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhhcCCCeeeeecCcccccCCCCC
Q 005361 311 IDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDPI 372 (700)
Q Consensus 311 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~ls~N~l~~~~p~~~ 372 (700)
|+|++|+|+ .+|..+ .++|+.|+|++|+|+ .+|..+...++.|++++|++. .+|+.+
T Consensus 351 L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~~sL~~LdLs~N~L~-~LP~sl 407 (754)
T PRK15370 351 LDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLPAALQIMQASRNNLV-RLPESL 407 (754)
T ss_pred EECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHHHHHHHHhhccCCcc-cCchhH
Confidence 999999988 466655 368899999999988 678777777888899999887 455543
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.77 E-value=2.7e-18 Score=193.08 Aligned_cols=239 Identities=28% Similarity=0.385 Sum_probs=129.1
Q ss_pred cEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEcc
Q 005361 93 HVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIE 171 (700)
Q Consensus 93 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 171 (700)
+++.|++..|+++. +|. .+++|++|+|++|+++.. |.. .+ |+.|++++|.++ .+|.. ..+|+.|+|+
T Consensus 223 ~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsL-P~l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls 290 (788)
T PRK15387 223 HITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSL-PVL---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIF 290 (788)
T ss_pred CCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcc-cCc---ccccceeeccCCchh-hhhhc---hhhcCEEECc
Confidence 44555555555543 222 134555555555555532 211 12 555555555554 22321 1345555666
Q ss_pred CCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCc
Q 005361 172 GNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPI 251 (700)
Q Consensus 172 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 251 (700)
+|+++ .+|. .+++|+.|+|++|.+++ +|.. ..+|+.|++++|.++. +|.. ..+|+.|+|++|.++. +
T Consensus 291 ~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-L 357 (788)
T PRK15387 291 GNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-L 357 (788)
T ss_pred CCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-cccc---ccccceEecCCCccCC-C
Confidence 66555 3333 13456666666666653 3321 1345556666666652 3321 1356777777777663 3
Q ss_pred hhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCC
Q 005361 252 PASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAK 331 (700)
Q Consensus 252 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 331 (700)
|.. ..+|+.|++++|.+.. +|.+. .+|+.|+|++|.|++ +|.. .++|+.|+|++|+|++ +|.. +.+
T Consensus 358 P~l---p~~L~~L~Ls~N~L~~--LP~l~-~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~ 423 (788)
T PRK15387 358 PTL---PSELYKLWAYNNRLTS--LPALP-SGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSG 423 (788)
T ss_pred CCC---Ccccceehhhcccccc--Ccccc-cccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhh
Confidence 332 2456666666665543 23221 467777777777774 3432 2567777777777774 4532 245
Q ss_pred CCEEEccCCcCCCCCchhhh--cCCCeeeeecCcccccCCCC
Q 005361 332 TNFMYLTGNKLTGPVPKYIF--NSNKNVDISLNNFTWESSDP 371 (700)
Q Consensus 332 L~~L~L~~N~l~~~ip~~~~--~~l~~L~ls~N~l~~~~p~~ 371 (700)
|+.|+|++|+|+ .+|..+. ..++.|+|++|+|++.+|..
T Consensus 424 L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~ 464 (788)
T PRK15387 424 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 464 (788)
T ss_pred hhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence 677777777777 6776654 35677777777777665543
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=5.6e-18 Score=191.78 Aligned_cols=245 Identities=24% Similarity=0.347 Sum_probs=184.2
Q ss_pred CcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcCCCCCCCEEEcc
Q 005361 92 CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIE 171 (700)
Q Consensus 92 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 171 (700)
.+.+.|+++++.++. +|..+. ++|+.|+|++|.++..+ ..+. ..|++|++++|.++ .+|..+. ++|+.|+|+
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~LtsLP-~~l~-~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACIP--EQITTLILDNNELKSLP-ENLQ-GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred cCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCCcCC-hhhc-cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 457889999988884 454443 57999999999998544 3332 24999999999998 4566554 479999999
Q ss_pred CCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCc
Q 005361 172 GNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPI 251 (700)
Q Consensus 172 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 251 (700)
+|++. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|+++. +|..+. ++|+.|++++|.++. +
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-L 319 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-L 319 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-C
Confidence 99998 6677664 58999999999998 5676553 589999999999984 454332 478999999999984 4
Q ss_pred hhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCC
Q 005361 252 PASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAK 331 (700)
Q Consensus 252 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 331 (700)
|..+ .++|+.|++++|.+... |..-.++|+.|+|++|+|+ .+|..+ .++|+.|+|++|+|+ .+|..+. ..
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt~L--P~~l~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~s 389 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALTSL--PASLPPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--AA 389 (754)
T ss_pred Cccc--cccceeccccCCccccC--ChhhcCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--HH
Confidence 5433 36899999999876653 3211268999999999998 466554 368999999999999 4565554 36
Q ss_pred CCEEEccCCcCCCCCchhhh------cCCCeeeeecCccc
Q 005361 332 TNFMYLTGNKLTGPVPKYIF------NSNKNVDISLNNFT 365 (700)
Q Consensus 332 L~~L~L~~N~l~~~ip~~~~------~~l~~L~ls~N~l~ 365 (700)
|+.|++++|+|+ .+|..+. +.+..|++.+|+++
T Consensus 390 L~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 390 LQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 899999999998 6776542 34678999999775
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.75 E-value=1.3e-17 Score=187.46 Aligned_cols=256 Identities=26% Similarity=0.343 Sum_probs=193.7
Q ss_pred EEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccC
Q 005361 94 VVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEG 172 (700)
Q Consensus 94 v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 172 (700)
-..|+|+.+.++ .+|+.+. ++|+.|++++|+++.. |. .++ |++|++++|+++. +|.. .++|+.|+|++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~L-P~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCC-CC---CCCCCcEEEecCCccCc-ccCc---ccccceeeccC
Confidence 457899999998 5676665 4899999999999964 43 234 9999999999994 5543 46899999999
Q ss_pred CcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCch
Q 005361 173 NLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIP 252 (700)
Q Consensus 173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 252 (700)
|.+. .+|.. ..+|+.|++++|+++ .+|. .+++|+.|+|++|++++ +|.. ..+|+.|++++|.++. +|
T Consensus 272 N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP 338 (788)
T PRK15387 272 NPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LP 338 (788)
T ss_pred Cchh-hhhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-cc
Confidence 9988 45543 357889999999998 4554 35789999999999985 4442 3468899999999984 55
Q ss_pred hhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCC
Q 005361 253 ASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKT 332 (700)
Q Consensus 253 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 332 (700)
. -..+|+.|++++|.+... |.+ ..+|+.|++++|+|+. +|.. ..+|+.|+|++|+|++ +|.. .++|
T Consensus 339 ~---lp~~Lq~LdLS~N~Ls~L--P~l-p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L 404 (788)
T PRK15387 339 T---LPSGLQELSVSDNQLASL--PTL-PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSEL 404 (788)
T ss_pred c---cccccceEecCCCccCCC--CCC-Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccCC
Confidence 3 235899999999888753 332 2689999999999994 5543 3679999999999995 5543 4689
Q ss_pred CEEEccCCcCCCCCchhhhcCCCeeeeecCcccccCCCCCCCCCCCccceecccCCCCCCCC
Q 005361 333 NFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDK 394 (700)
Q Consensus 333 ~~L~L~~N~l~~~ip~~~~~~l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~~~~~~~ 394 (700)
+.|++++|+|+ .+|.. ...++.|++++|.++ .+|..+ |.+.. +..+....|.+..
T Consensus 405 ~~LdLS~N~Ls-sIP~l-~~~L~~L~Ls~NqLt-~LP~sl-~~L~~---L~~LdLs~N~Ls~ 459 (788)
T PRK15387 405 KELMVSGNRLT-SLPML-PSGLLSLSVYRNQLT-RLPESL-IHLSS---ETTVNLEGNPLSE 459 (788)
T ss_pred CEEEccCCcCC-CCCcc-hhhhhhhhhccCccc-ccChHH-hhccC---CCeEECCCCCCCc
Confidence 99999999998 57753 457889999999998 678776 44332 3345555666653
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.74 E-value=7.7e-20 Score=181.34 Aligned_cols=255 Identities=21% Similarity=0.228 Sum_probs=196.0
Q ss_pred CCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccC-CcCCCCCCccccCCCCccEEEe
Q 005361 117 YLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEG-NLFTGSIPPDIRKLINLQKLIL 194 (700)
Q Consensus 117 ~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L 194 (700)
.-..+.|..|.|+.+++.+|+.++ |+.|||++|.|+.+-|+.|.++++|..|-+-+ |+|+......|.+|..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 567889999999999999999999 99999999999999999999999988887766 9999766678999999999999
Q ss_pred eecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCC------------CchhhhhcCCCCC
Q 005361 195 SSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEG------------PIPASISALTSLT 262 (700)
Q Consensus 195 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~------------~~~~~~~~l~~L~ 262 (700)
.-|++.-...+.|..+++|..|.+.+|.+....-..|..+..++.+++..|.+.. ..|..++...-..
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 9999998888999999999999999999985555588999999999999987432 1122222222222
Q ss_pred EEEcCCCCCCCCcccccCc--cCccEEEcccCCCCCCCc-hhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccC
Q 005361 263 DLRISDLKGSESAFPKLDK--MNLKTLILTKCLIHGEIP-DYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTG 339 (700)
Q Consensus 263 ~L~l~~n~~~~~~~~~l~~--~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 339 (700)
-..+....+.......+.. ..+..--.+.+...+.-| ..|..+++|+.|+|++|+|+++.+.+|+.+..+++|.|..
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 2222221221111111111 122111223333444444 4799999999999999999999999999999999999999
Q ss_pred CcCCCCCchhhhc---CCCeeeeecCcccccCCCCC
Q 005361 340 NKLTGPVPKYIFN---SNKNVDISLNNFTWESSDPI 372 (700)
Q Consensus 340 N~l~~~ip~~~~~---~l~~L~ls~N~l~~~~p~~~ 372 (700)
|+|. .+...++. .++.|+|.+|+++...|-.|
T Consensus 308 N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF 342 (498)
T KOG4237|consen 308 NKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAF 342 (498)
T ss_pred chHH-HHHHHhhhccccceeeeecCCeeEEEecccc
Confidence 9998 67777765 57899999999997777666
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.74 E-value=7.6e-17 Score=195.09 Aligned_cols=258 Identities=21% Similarity=0.296 Sum_probs=147.3
Q ss_pred cEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEcc
Q 005361 93 HVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIE 171 (700)
Q Consensus 93 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 171 (700)
+++.|+|.++.+. .++..+..+++|+.|+|+++.....+|. +..++ |++|+|++|.....+|..+.++++|+.|+++
T Consensus 612 ~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 612 NLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred CCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 4555555555544 3444455566666666665543334443 33444 6666666655444566666666666666666
Q ss_pred CCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhh--------------------
Q 005361 172 GNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFI-------------------- 231 (700)
Q Consensus 172 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-------------------- 231 (700)
+|.....+|..+ ++++|+.|+|++|.....+|.. ..+|+.|++++|.+. .+|..+
T Consensus 690 ~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~ 764 (1153)
T PLN03210 690 RCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWE 764 (1153)
T ss_pred CCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccc
Confidence 654444555443 5566666666665443333321 245566666666554 223211
Q ss_pred ----------cCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccc-cCccCccEEEcccCCCCCCCch
Q 005361 232 ----------GKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPK-LDKMNLKTLILTKCLIHGEIPD 300 (700)
Q Consensus 232 ----------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-l~~~~L~~L~L~~n~l~~~~p~ 300 (700)
..+++|+.|+|++|.....+|..+.++++|+.|++++|..... +|. ...++|+.|+|++|..-..+|.
T Consensus 765 ~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~-LP~~~~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 765 RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLET-LPTGINLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCe-eCCCCCccccCEEECCCCCccccccc
Confidence 1124566777777766666777777777777777776543322 232 2236777777777654434443
Q ss_pred hhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCC-cCCCCCchhh--hcCCCeeeeecCc
Q 005361 301 YIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGN-KLTGPVPKYI--FNSNKNVDISLNN 363 (700)
Q Consensus 301 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~ip~~~--~~~l~~L~ls~N~ 363 (700)
. .++|+.|+|++|.++ .+|..+..+++|+.|+|++| ++. .+|..+ +..++.++++++.
T Consensus 844 ~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 844 I---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred c---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence 2 356777777777777 56777777777888877774 444 455443 2356666766653
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=1.3e-18 Score=182.58 Aligned_cols=268 Identities=19% Similarity=0.237 Sum_probs=177.3
Q ss_pred EEEecCCCCC-CcCchhhcCCCCCCEEECcCCCCCCC----ccccccccc-ccEEEccCCCCCC------CCchhcCCCC
Q 005361 96 TIALKAQNLT-GTLPTELSKLRYLKQLDLSRNCLTGS----FSPQWASLQ-LVELSVMGNRLSG------PFPKVLTNIT 163 (700)
Q Consensus 96 ~L~L~~~~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~-L~~L~L~~n~l~~------~~p~~~~~l~ 163 (700)
.|+|..+.++ ......+..+++|+.|+++++.++.. ++..+...+ +++|+++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4566667666 33445566777788888888887542 333444455 8888888877662 2345667788
Q ss_pred CCCEEEccCCcCCCCCCccccCCCC---ccEEEeeecCCCC----cCchhhhCC-CCCcEEEeecCcCCCC----Chhhh
Q 005361 164 TLKNLSIEGNLFTGSIPPDIRKLIN---LQKLILSSNSFTG----ELPAELTKL-TNLNDLRISDNNFSGK----IPEFI 231 (700)
Q Consensus 164 ~L~~L~L~~n~l~~~~p~~~~~l~~---L~~L~L~~n~l~~----~~~~~~~~l-~~L~~L~L~~n~l~~~----~~~~l 231 (700)
+|++|+|++|.+....+..+..+.+ |++|++++|.++. .+...+..+ ++|+.|++++|.+++. +...+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 8888888888887655555555555 8888888888773 233445566 8888888888888743 33455
Q ss_pred cCCCcccEEEccCCCCCCC----chhhhhcCCCCCEEEcCCCCCCCCcccc----cCc-cCccEEEcccCCCCCCCchhh
Q 005361 232 GKWKKIQKLHIQGSSLEGP----IPASISALTSLTDLRISDLKGSESAFPK----LDK-MNLKTLILTKCLIHGEIPDYI 302 (700)
Q Consensus 232 ~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~----l~~-~~L~~L~L~~n~l~~~~p~~~ 302 (700)
..+++|+.|++++|.+.+. ++..+..+++|+.|++++|.+....... +.. ++|+.|++++|.+++.....+
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 6667888888888888742 3334556678888888887665433222 233 678888888888775322222
Q ss_pred c-----CCCCCCEEeccCCCCCC----CChhhHhcCCCCCEEEccCCcCCCC----Cchhhh---cCCCeeeeecCc
Q 005361 303 G-----DMTKLKNIDLSFNNLTG----GIPTTFEKLAKTNFMYLTGNKLTGP----VPKYIF---NSNKNVDISLNN 363 (700)
Q Consensus 303 ~-----~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~----ip~~~~---~~l~~L~ls~N~ 363 (700)
. ..+.|+.|++++|.++. .+...+..+++|+.+++++|.++.. +...+. ..++.+++.+|+
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 1 23688888888888862 2334566667888888888888743 222221 356677777764
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.73 E-value=9.6e-17 Score=194.20 Aligned_cols=255 Identities=23% Similarity=0.284 Sum_probs=145.9
Q ss_pred cCchhhcCCC-CCCEEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccC
Q 005361 107 TLPTELSKLR-YLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRK 185 (700)
Q Consensus 107 ~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 185 (700)
.+|..|..++ +|+.|.+.++.+. .+|..+..-.|+.|++.+|.+. .++..+..+++|++|+|+++.....+| .+..
T Consensus 579 ~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~ 655 (1153)
T PLN03210 579 HLPEGFDYLPPKLRLLRWDKYPLR-CMPSNFRPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSM 655 (1153)
T ss_pred ecCcchhhcCcccEEEEecCCCCC-CCCCcCCccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-cccc
Confidence 3455555543 4666666666554 3344443333666666666655 445555666666666666554333444 3555
Q ss_pred CCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEE
Q 005361 186 LINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLR 265 (700)
Q Consensus 186 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 265 (700)
+++|+.|+|++|.....+|..+..+++|+.|++++|.....+|..+ ++++|+.|++++|.....+|.. ..+|+.|+
T Consensus 656 l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~ 731 (1153)
T PLN03210 656 ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLD 731 (1153)
T ss_pred CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeee
Confidence 6666666666655444566666666666666666554333444433 4555666666555433333321 23444555
Q ss_pred cCCCCCCCCcc---------------------------cc--c-CccCccEEEcccCCCCCCCchhhcCCCCCCEEeccC
Q 005361 266 ISDLKGSESAF---------------------------PK--L-DKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSF 315 (700)
Q Consensus 266 l~~n~~~~~~~---------------------------~~--l-~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 315 (700)
+++|.+...+. +. . ..++|+.|+|++|.....+|..+..+++|+.|+|++
T Consensus 732 L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~ 811 (1153)
T PLN03210 732 LDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIEN 811 (1153)
T ss_pred cCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCC
Confidence 54443322110 00 0 115788888888877767888888888888888888
Q ss_pred CCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhhcCCCeeeeecCcccccCCCC
Q 005361 316 NNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDP 371 (700)
Q Consensus 316 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~ls~N~l~~~~p~~ 371 (700)
|...+.+|..+ ++++|+.|+|++|.....+|.. ..+++.|+|++|.+. .+|.+
T Consensus 812 C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~-~~nL~~L~Ls~n~i~-~iP~s 864 (1153)
T PLN03210 812 CINLETLPTGI-NLESLESLDLSGCSRLRTFPDI-STNISDLNLSRTGIE-EVPWW 864 (1153)
T ss_pred CCCcCeeCCCC-CccccCEEECCCCCcccccccc-ccccCEeECCCCCCc-cChHH
Confidence 75444666554 6777788888777554455542 346677777777665 34443
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.71 E-value=5.5e-19 Score=192.40 Aligned_cols=240 Identities=27% Similarity=0.324 Sum_probs=122.6
Q ss_pred CCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEee
Q 005361 117 YLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILS 195 (700)
Q Consensus 117 ~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 195 (700)
+|++++++.|++++.. +.+.... |+.|...+|+++ .+|..+..+.+|+.|.+.+|.+. .+|.....++.|++|+|.
T Consensus 242 nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred cceeeecchhhhhcch-HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeeh
Confidence 3444444444444322 3333333 444444444443 34444444444444444444444 334444444445555554
Q ss_pred ecCCCCcCch-hhhCCCC-CcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCC
Q 005361 196 SNSFTGELPA-ELTKLTN-LNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSE 273 (700)
Q Consensus 196 ~n~l~~~~~~-~~~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 273 (700)
.|.+. .+|+ .+..+.. |+.|+.+.|.+.....-.=..++.|+.|.+.+|.++...-+.+.+..+|+.|+|++|.+..
T Consensus 319 ~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~ 397 (1081)
T KOG0618|consen 319 SNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS 397 (1081)
T ss_pred hcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence 44444 2222 1221111 3333333333331110001123446666666666666555556666666666666665555
Q ss_pred CcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCC-CCchhhh
Q 005361 274 SAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTG-PVPKYIF 351 (700)
Q Consensus 274 ~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~ip~~~~ 351 (700)
.+-..+.. ..|++|+|++|+++ .+|+....++.|++|...+|+|. ..| .+..+++|+.+|++.|+++- .+|...-
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p 474 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP 474 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC
Confidence 44444444 56666666666666 55566666666666666666666 445 56677777777777777752 3444443
Q ss_pred -cCCCeeeeecCc
Q 005361 352 -NSNKNVDISLNN 363 (700)
Q Consensus 352 -~~l~~L~ls~N~ 363 (700)
++|++|||++|.
T Consensus 475 ~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 475 SPNLKYLDLSGNT 487 (1081)
T ss_pred CcccceeeccCCc
Confidence 567777777774
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.68 E-value=1.3e-18 Score=189.46 Aligned_cols=261 Identities=23% Similarity=0.315 Sum_probs=161.9
Q ss_pred EEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCcccccccccccEEEccCCCCCC---------------------C
Q 005361 96 TIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSG---------------------P 154 (700)
Q Consensus 96 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~---------------------~ 154 (700)
.|+|.+|.+. ...+..+++|+.|....|++.... .....|+.|+.++|.++. .
T Consensus 182 ~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~---~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~ 255 (1081)
T KOG0618|consen 182 QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE---ISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSN 255 (1081)
T ss_pred eeecccchhh---hhhhhhccchhhhhhhhcccceEE---ecCcchheeeeccCcceeeccccccccceeeecchhhhhc
Confidence 4777777765 223455566666666555554221 112224444444444442 2
Q ss_pred CchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCC
Q 005361 155 FPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKW 234 (700)
Q Consensus 155 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 234 (700)
+|+.+..+.+|+.|...+|+++ .+|..+....+|+.|.+..|.++ -+|.....++.|++|+|..|++....+..+..+
T Consensus 256 lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~ 333 (1081)
T KOG0618|consen 256 LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVL 333 (1081)
T ss_pred chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhh
Confidence 3344444444444444444443 34444444444444444444444 333334444555555555555542222222222
Q ss_pred Cc-ccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEe
Q 005361 235 KK-IQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNID 312 (700)
Q Consensus 235 ~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 312 (700)
.. |+.|+.+.|.+.......=...+.|+.|++.+|.+.+..+|.+.. ..|+.|+|++|+|...+...+.+++.|++|+
T Consensus 334 ~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~ 413 (1081)
T KOG0618|consen 334 NASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELN 413 (1081)
T ss_pred hHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHh
Confidence 22 444444444443211111122355778889999999999999888 9999999999999966666788999999999
Q ss_pred ccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhh-hcCCCeeeeecCcccc
Q 005361 313 LSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYI-FNSNKNVDISLNNFTW 366 (700)
Q Consensus 313 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~-~~~l~~L~ls~N~l~~ 366 (700)
||+|+++ .+|.++..++.|++|...+|++. ..|+.. .+.++.+|++.|+++.
T Consensus 414 LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 414 LSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred cccchhh-hhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecccchhhh
Confidence 9999999 78899999999999999999998 777433 4578999999998874
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.66 E-value=3.2e-17 Score=172.16 Aligned_cols=250 Identities=20% Similarity=0.281 Sum_probs=189.9
Q ss_pred cEEEEEecCCCCCCc----CchhhcCCCCCCEEECcCCCCCC------Cccccccccc-ccEEEccCCCCCCCCchhcCC
Q 005361 93 HVVTIALKAQNLTGT----LPTELSKLRYLKQLDLSRNCLTG------SFSPQWASLQ-LVELSVMGNRLSGPFPKVLTN 161 (700)
Q Consensus 93 ~v~~L~L~~~~l~~~----~~~~l~~l~~L~~L~L~~n~l~~------~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~ 161 (700)
+++.|+++++.++.. ++..+...+.|+.|+++++.+.+ .++..+..++ |+.|++++|.+.+..+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 489999999988543 55567788899999999998763 2334555566 999999999998666666655
Q ss_pred CCC---CCEEEccCCcCCC----CCCccccCC-CCccEEEeeecCCCCc----CchhhhCCCCCcEEEeecCcCCCC---
Q 005361 162 ITT---LKNLSIEGNLFTG----SIPPDIRKL-INLQKLILSSNSFTGE----LPAELTKLTNLNDLRISDNNFSGK--- 226 (700)
Q Consensus 162 l~~---L~~L~L~~n~l~~----~~p~~~~~l-~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~--- 226 (700)
+.+ |++|++++|++.+ .+...+..+ ++|+.|++++|.+++. +...+..+++|++|++++|.+++.
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 183 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR 183 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence 555 9999999999873 223345666 8999999999999843 344577788999999999999842
Q ss_pred -ChhhhcCCCcccEEEccCCCCCCC----chhhhhcCCCCCEEEcCCCCCCCCccccc----C--ccCccEEEcccCCCC
Q 005361 227 -IPEFIGKWKKIQKLHIQGSSLEGP----IPASISALTSLTDLRISDLKGSESAFPKL----D--KMNLKTLILTKCLIH 295 (700)
Q Consensus 227 -~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~l----~--~~~L~~L~L~~n~l~ 295 (700)
++..+..+++|+.|++++|.+.+. +...+..+++|+.|++++|.+....+..+ . ...|++|++++|.++
T Consensus 184 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 184 ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 334456667999999999998753 34456678899999999988765333221 1 269999999999997
Q ss_pred C----CCchhhcCCCCCCEEeccCCCCCCC----ChhhHhcC-CCCCEEEccCCcC
Q 005361 296 G----EIPDYIGDMTKLKNIDLSFNNLTGG----IPTTFEKL-AKTNFMYLTGNKL 342 (700)
Q Consensus 296 ~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l-~~L~~L~L~~N~l 342 (700)
. .+...+..+++|+.|++++|.++.. ....+... +.|+.|++.+|.+
T Consensus 264 ~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 264 DDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred cHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 2 2344566678999999999999955 34455555 7899999998864
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=2.2e-18 Score=151.99 Aligned_cols=161 Identities=30% Similarity=0.513 Sum_probs=140.3
Q ss_pred cCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEE
Q 005361 91 TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLS 169 (700)
Q Consensus 91 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 169 (700)
..+++.|.|+.|.++ .+|+.+..+.+|+.|++++|+++ ..|..++.++ |+.|++.-|++. ..|..|+.+|.|+.||
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 458999999999998 55667999999999999999998 4566777777 999999999988 8899999999999999
Q ss_pred ccCCcCCC-CCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCC
Q 005361 170 IEGNLFTG-SIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLE 248 (700)
Q Consensus 170 L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 248 (700)
|.+|++.. .+|..|..+..|+-|.|+.|.+. .+|..++.+++|+.|.+.+|.+- .+|..++.++.|++|++++|+++
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 99999874 57888999999999999999998 88888999999999999999887 78889999999999999999998
Q ss_pred CCchhhhhc
Q 005361 249 GPIPASISA 257 (700)
Q Consensus 249 ~~~~~~~~~ 257 (700)
.+|..+++
T Consensus 187 -vlppel~~ 194 (264)
T KOG0617|consen 187 -VLPPELAN 194 (264)
T ss_pred -ecChhhhh
Confidence 45555544
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=5e-18 Score=149.81 Aligned_cols=178 Identities=26% Similarity=0.468 Sum_probs=131.4
Q ss_pred cCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCccc
Q 005361 159 LTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQ 238 (700)
Q Consensus 159 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 238 (700)
+.++.+++.|.|++|+++ .+|..+..+.+|+.|++.+|+++ .+|..++.+++|+.|++.-|++. ..|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 445667777888888887 66777788888888888888887 67777788888888888877776 6677777777777
Q ss_pred EEEccCCCCCC-CchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCC
Q 005361 239 KLHIQGSSLEG-PIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNN 317 (700)
Q Consensus 239 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 317 (700)
.|||.+|.+.. .+|..|..+. .|+-|+|+.|.+. .+|...+.+++|+.|.+..|.
T Consensus 106 vldltynnl~e~~lpgnff~m~-----------------------tlralyl~dndfe-~lp~dvg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMT-----------------------TLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDND 161 (264)
T ss_pred hhhccccccccccCCcchhHHH-----------------------HHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCc
Confidence 77777776653 3444444444 4455555667776 777788999999999999999
Q ss_pred CCCCChhhHhcCCCCCEEEccCCcCCCCCchhhhc-----CCCeeeeecCccc
Q 005361 318 LTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFN-----SNKNVDISLNNFT 365 (700)
Q Consensus 318 l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~-----~l~~L~ls~N~l~ 365 (700)
+- .+|..++.+.+|++|++.+|+++ .+|+.+.. +-+.+.+.+|++.
T Consensus 162 ll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv 212 (264)
T KOG0617|consen 162 LL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWV 212 (264)
T ss_pred hh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCC
Confidence 88 78888999999999999999998 67766542 2234455556443
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.46 E-value=5.8e-13 Score=150.69 Aligned_cols=152 Identities=31% Similarity=0.590 Sum_probs=110.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCC---CCCCCCCCCCCC-CCCcccCCCCCCCCCCeeeCCCCC--cCcEEEEEecCCCCCCc
Q 005361 34 NKLHAEEVKALKQIGRKLGKK---DWNFGVDPCSQK-GNWELSSDDKKGFESNVTCDCSSA--TCHVVTIALKAQNLTGT 107 (700)
Q Consensus 34 ~~~~~~e~~al~~l~~~~~~~---~w~~~~d~C~~~-~~w~~~~~~~~~~~~~v~C~~~~~--~~~v~~L~L~~~~l~~~ 107 (700)
..+.+.|.+||..+++.++.. +|. .|+|... ..| .||.|..... ...|+.|+|+++.+.|.
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~~~~W~--g~~C~p~~~~w-----------~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ 433 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPLRFGWN--GDPCVPQQHPW-----------SGADCQFDSTKGKWFIDGLGLDNQGLRGF 433 (623)
T ss_pred cccCchHHHHHHHHHHhcCCcccCCCC--CCCCCCccccc-----------ccceeeccCCCCceEEEEEECCCCCcccc
Confidence 456778999999999998752 685 4677421 247 8999953221 23689999999999999
Q ss_pred CchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCC
Q 005361 108 LPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKL 186 (700)
Q Consensus 108 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 186 (700)
+|..+.++++|+.|+|++|.+.+.+|..+..++ |+.|+|++|++++.+|+.++++++|++|+|++|++++.+|..+..+
T Consensus 434 ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513 (623)
T ss_pred CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhc
Confidence 999999999999999999988887777777666 7777777777777777777777777777777777776666665542
Q ss_pred -CCccEEEeeecC
Q 005361 187 -INLQKLILSSNS 198 (700)
Q Consensus 187 -~~L~~L~L~~n~ 198 (700)
.++..+++.+|.
T Consensus 514 ~~~~~~l~~~~N~ 526 (623)
T PLN03150 514 LLHRASFNFTDNA 526 (623)
T ss_pred cccCceEEecCCc
Confidence 344455555553
No 25
>PLN03150 hypothetical protein; Provisional
Probab=99.43 E-value=9e-13 Score=149.13 Aligned_cols=95 Identities=36% Similarity=0.393 Sum_probs=82.1
Q ss_pred ccchhhhhhhccCC---ccceEEEeeecCcceEEEEEeEEEEecCCCccccCCeEEEEEEecceecccccccchhcCCcC
Q 005361 482 AVDLELYRTARVSP---LSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQEKLVKKDFNIEDEAGGTG 558 (700)
Q Consensus 482 ~~~~~ly~tar~~~---~~lt~~~~~~~~~~y~vrlhF~ei~~~~~~~~~~~~~rvF~iyI~~~~~~~~~di~~~~~~~~ 558 (700)
.+|..||+|||.+. .+++|.+.++++|.|.||||||||.. .....++|+|+||||++.+.+++|+...+++..
T Consensus 249 ~~P~~VyqTA~~~~~~~~~lty~~~v~~~~~Y~VrLhFaEi~~----~~~~~~~R~F~V~ing~~~~~~~di~~~~g~~~ 324 (623)
T PLN03150 249 FYPESLYQSALVSTDTQPDLSYTMDVDPNRNYSVWLHFAEIDN----SITAEGKRVFDVLINGDTAFKDVDIVKMSGERY 324 (623)
T ss_pred cChHHHhhhhccccCCCCceEEEeecCCCCCEEEEEEEEeccC----ccCCCceEEEEEEECCEEeecccChhhhcCCcc
Confidence 56899999999987 48999999999999999999999942 223568999999999999999999998888888
Q ss_pred ccEEEeeEEEecCCccEEEEEE
Q 005361 559 IPIVKNFPAEVTSHTLKIHLYW 580 (700)
Q Consensus 559 ~p~~~df~v~~~~~~~~i~~~~ 580 (700)
.|+|++|.+.+++..+.|.+..
T Consensus 325 ~~~~~~~~v~~~~g~l~isl~p 346 (623)
T PLN03150 325 TALVLNKTVAVSGRTLTIVLQP 346 (623)
T ss_pred cceEEEeEEeecCCeEEEEEee
Confidence 9999999998887656666654
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.26 E-value=2.9e-13 Score=140.94 Aligned_cols=198 Identities=28% Similarity=0.406 Sum_probs=137.8
Q ss_pred EECcCCCCCCCcccccc-ccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecC
Q 005361 121 LDLSRNCLTGSFSPQWA-SLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNS 198 (700)
Q Consensus 121 L~L~~n~l~~~~~~~~~-~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 198 (700)
|.|++-.+...+-.... .+. -...||+.|++. .+|..+..+..|+.|.|..|.+. .+|..+.++..|++|+|+.|+
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccch
Confidence 44444444433222222 233 556788888887 67877777888888888888887 788888899999999999998
Q ss_pred CCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccc
Q 005361 199 FTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPK 278 (700)
Q Consensus 199 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 278 (700)
++ .+|..+..|+ |+.|-+++|+++ .+|..++.++.|..|+.+.|.+. .+|..+..+.+|+.|.+..|+..
T Consensus 133 lS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~------ 202 (722)
T KOG0532|consen 133 LS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE------ 202 (722)
T ss_pred hh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh------
Confidence 88 6777777775 788888888887 67777888888888998888887 57777888887777776664433
Q ss_pred cCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhh
Q 005361 279 LDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF 351 (700)
Q Consensus 279 l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~ 351 (700)
.+|..+..| .|..||+|.|+++ .+|-.|.+|..|++|-|.+|.++ +.|..++
T Consensus 203 ------------------~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC 254 (722)
T KOG0532|consen 203 ------------------DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQIC 254 (722)
T ss_pred ------------------hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHH
Confidence 233334433 2556666666665 55556666666666666666665 4444443
No 27
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=99.25 E-value=1.9e-11 Score=128.14 Aligned_cols=91 Identities=31% Similarity=0.401 Sum_probs=74.5
Q ss_pred ccchhhhhhhccCC-----ccceEEEeeecCcceEEEEEeEEEEecCCCccccCCeEEEEEEecceecccccccch-hcC
Q 005361 482 AVDLELYRTARVSP-----LSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQEKLVKKDFNIED-EAG 555 (700)
Q Consensus 482 ~~~~~ly~tar~~~-----~~lt~~~~~~~~~~y~vrlhF~ei~~~~~~~~~~~~~rvF~iyI~~~~~~~~~di~~-~~~ 555 (700)
.+|.+||+|||.+. .+++|.+ ++++..|.||||||||+.. ....++|+|+||||++.+.+ |+.. ..+
T Consensus 231 ~~P~~V~~TA~~~~~~s~~~nltw~~-~~~~~~y~v~lHFaEi~~~----~~~~~~R~F~IyiN~~~~~~--~~~~~~~~ 303 (347)
T PF12819_consen 231 DAPSAVYQTARTPSNSSDPLNLTWSF-VDPGFSYYVRLHFAEIQSL----SPNNNQREFDIYINGQTAYS--DVSPPYLG 303 (347)
T ss_pred cChHHHHHhhhcccccccceEEEecc-CCCCccEEEEEEEeecccc----cCCCCeEEEEEEECCeEccC--ccCccccc
Confidence 78999999999975 6899999 9999999999999999532 23566899999999999987 5554 456
Q ss_pred CcCccEEEeeEEEecCCc-cEEEEE
Q 005361 556 GTGIPIVKNFPAEVTSHT-LKIHLY 579 (700)
Q Consensus 556 ~~~~p~~~df~v~~~~~~-~~i~~~ 579 (700)
+...|+|+||++.+++.. +.|.+.
T Consensus 304 ~~~~~~~~d~~~~~~~~~~~~isL~ 328 (347)
T PF12819_consen 304 ADTVPYYSDYVVNVPDSGFLNISLG 328 (347)
T ss_pred CcceEeecceEEEecCCCEEEEEEE
Confidence 678899999999988764 444443
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.24 E-value=4.7e-13 Score=139.34 Aligned_cols=181 Identities=26% Similarity=0.403 Sum_probs=149.8
Q ss_pred CCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEE
Q 005361 114 KLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKL 192 (700)
Q Consensus 114 ~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 192 (700)
.+..-...||+.|++.. +|..+..+. |+.|.|..|.+. .+|..+.++..|.+|+|+.|+++ .+|..++.|+ |+.|
T Consensus 73 ~ltdt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred cccchhhhhcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 45556678999999984 555555555 999999999998 78999999999999999999999 7888888775 8999
Q ss_pred EeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCC
Q 005361 193 ILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGS 272 (700)
Q Consensus 193 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 272 (700)
.+++|+++ .+|..++.+..|..|+.+.|.+. .+|..++.+.+|+.|.+..|.+. .+|+.+..|
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-------------- 211 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-------------- 211 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC--------------
Confidence 99999998 78888999999999999999998 77888999999999999999998 456555543
Q ss_pred CCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHh
Q 005361 273 ESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFE 327 (700)
Q Consensus 273 ~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 327 (700)
.|..||++.|+++ .+|-.|..|+.|++|.|.+|.|. ..|..+.
T Consensus 212 ----------pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC 254 (722)
T KOG0532|consen 212 ----------PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQIC 254 (722)
T ss_pred ----------ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHH
Confidence 3556677777777 77888888888888888888888 4555443
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.19 E-value=3.2e-11 Score=130.46 Aligned_cols=200 Identities=30% Similarity=0.463 Sum_probs=118.7
Q ss_pred EEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCC-CccEEEeeecCCCCcCchhhhCCCCCcEEEeecC
Q 005361 143 ELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLI-NLQKLILSSNSFTGELPAELTKLTNLNDLRISDN 221 (700)
Q Consensus 143 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 221 (700)
.|++..|.+.. ....+..++.++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 45555555531 2223444566777777777766 4455555553 6777777777766 44455666777777777777
Q ss_pred cCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchh
Q 005361 222 NFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDY 301 (700)
Q Consensus 222 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~ 301 (700)
+++ .+|...+..++|+.|++++|.+. .+|.....+..|++|.+++|.........-...++..|.+.+|++. .++..
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~ 250 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPES 250 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccch
Confidence 776 44444446667777777777776 4555444555566666666532221111111145555556666665 33555
Q ss_pred hcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhh
Q 005361 302 IGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYI 350 (700)
Q Consensus 302 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~ 350 (700)
+..+++|+.|++++|+++.... +..+.+|+.|++++|.++..+|...
T Consensus 251 ~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 251 IGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred hccccccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence 6667777777777777773333 6677777777777777775555433
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.09 E-value=1.4e-10 Score=125.46 Aligned_cols=198 Identities=31% Similarity=0.469 Sum_probs=148.6
Q ss_pred EEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCC-CCCEEEccCCcCCCCCCccccCCCCccEEEeeec
Q 005361 120 QLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNIT-TLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSN 197 (700)
Q Consensus 120 ~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 197 (700)
.|+++.|.+...... ...+. ++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~~~-~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNISE-LLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCchh-hhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 577777776433333 23334 888899999888 5555566664 8999999999988 56667888999999999999
Q ss_pred CCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCccc
Q 005361 198 SFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFP 277 (700)
Q Consensus 198 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 277 (700)
.++ .++.....+++|+.|++++|+++ .+|........|++|.+++|.+. ..+..+..+.++..|.+.+|.+... ..
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~ 249 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PE 249 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cc
Confidence 988 56665557889999999999988 56665556667999999998644 4666788888888888777665543 12
Q ss_pred ccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhH
Q 005361 278 KLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTF 326 (700)
Q Consensus 278 ~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 326 (700)
.+.. .+++.|++++|.++.... +..+.+|+.|++++|.+....|...
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred hhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence 2333 679999999999985444 8888999999999999997666543
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=3.6e-11 Score=121.91 Aligned_cols=136 Identities=20% Similarity=0.194 Sum_probs=67.3
Q ss_pred CCCCcEEEeecCcCCCC-ChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCc-ccccCc-cCccE
Q 005361 210 LTNLNDLRISDNNFSGK-IPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESA-FPKLDK-MNLKT 286 (700)
Q Consensus 210 l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~l~~-~~L~~ 286 (700)
++.|+.|.|+.|.++.. +...+..+|+|+.|+|..|............+..|+.|+|++|++.+.. ++.... +.|+.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 34444444444444411 1122233444555555444321122222333444455555544443322 122222 45555
Q ss_pred EEcccCCCCCC-Cchh-----hcCCCCCCEEeccCCCCCCCC-hhhHhcCCCCCEEEccCCcCCCC
Q 005361 287 LILTKCLIHGE-IPDY-----IGDMTKLKNIDLSFNNLTGGI-PTTFEKLAKTNFMYLTGNKLTGP 345 (700)
Q Consensus 287 L~L~~n~l~~~-~p~~-----~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~ 345 (700)
|+++.+.+... .|+. ...+++|+.|+++.|+|.... -..+..+++|+.|....|.++.+
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 55555555432 2222 345688889999999886321 13456677888888888888743
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.03 E-value=5.3e-11 Score=114.77 Aligned_cols=222 Identities=23% Similarity=0.243 Sum_probs=122.8
Q ss_pred cEEEEEecCC--------CCCCcCchhhcCCCCCCEEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcCCCCC
Q 005361 93 HVVTIALKAQ--------NLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITT 164 (700)
Q Consensus 93 ~v~~L~L~~~--------~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~l~~ 164 (700)
++..|..+.. -+...+|-.+.-+++|+.+.++.+.-..+..-......|+++...+..+.. .| .+-.+..
T Consensus 183 ~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~-~~-~l~pe~~ 260 (490)
T KOG1259|consen 183 QLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQD-VP-SLLPETI 260 (490)
T ss_pred heeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccc-cc-cccchhh
Confidence 5666666532 223345555666788888888877544333222333337777776655441 11 1111111
Q ss_pred CCEEEccC-CcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEcc
Q 005361 165 LKNLSIEG-NLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQ 243 (700)
Q Consensus 165 L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 243 (700)
+.-+.-+. ....|..-........|++|||++|.|+ .+.++..-+|.++.|+++.|.+.. + +.+..+++|+.|||+
T Consensus 261 ~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS 337 (490)
T KOG1259|consen 261 LADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLS 337 (490)
T ss_pred hcCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecc
Confidence 11111110 1111222222333456777777777776 455556666777777777777652 2 226666677777777
Q ss_pred CCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCC-
Q 005361 244 GSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGI- 322 (700)
Q Consensus 244 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~- 322 (700)
+|.++. +...-..+. ++++|.|+.|.|... +.+..+-+|..||+++|+|....
T Consensus 338 ~N~Ls~-~~Gwh~KLG-----------------------NIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~lde 391 (490)
T KOG1259|consen 338 GNLLAE-CVGWHLKLG-----------------------NIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDE 391 (490)
T ss_pred cchhHh-hhhhHhhhc-----------------------CEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHH
Confidence 776652 222222333 445555555555411 23556677888899999887322
Q ss_pred hhhHhcCCCCCEEEccCCcCCCC
Q 005361 323 PTTFEKLAKTNFMYLTGNKLTGP 345 (700)
Q Consensus 323 p~~~~~l~~L~~L~L~~N~l~~~ 345 (700)
-..++++|.|+.|.|.+|.+.+.
T Consensus 392 V~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 392 VNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hcccccccHHHHHhhcCCCcccc
Confidence 23578889999999999999843
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.01 E-value=5.9e-11 Score=117.36 Aligned_cols=229 Identities=17% Similarity=0.256 Sum_probs=126.4
Q ss_pred CcEEEEEecCCCCCC----cCchhhcCCCCCCEEECcCC---CCCCCcccccc-------cc-cccEEEccCCCCCCCCc
Q 005361 92 CHVVTIALKAQNLTG----TLPTELSKLRYLKQLDLSRN---CLTGSFSPQWA-------SL-QLVELSVMGNRLSGPFP 156 (700)
Q Consensus 92 ~~v~~L~L~~~~l~~----~~~~~l~~l~~L~~L~L~~n---~l~~~~~~~~~-------~l-~L~~L~L~~n~l~~~~p 156 (700)
..++.|+|++|.+.. .+...+.+.++|+..++++- ++...+|+.+. .. +|++|+||+|-+...-+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 468899999998853 35556778888998888753 22333443332 22 37777777777653333
Q ss_pred hh----cCCCCCCCEEEccCCcCCCCCC-------------ccccCCCCccEEEeeecCCCCc----CchhhhCCCCCcE
Q 005361 157 KV----LTNITTLKNLSIEGNLFTGSIP-------------PDIRKLINLQKLILSSNSFTGE----LPAELTKLTNLND 215 (700)
Q Consensus 157 ~~----~~~l~~L~~L~L~~n~l~~~~p-------------~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~ 215 (700)
.. +..+..|++|.|.+|.+...-- .....-++|+.+...+|++... +...|...+.|+.
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~lee 189 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEE 189 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccce
Confidence 32 3456677777777776551100 1112234566666666655421 1223445555666
Q ss_pred EEeecCcCCCC----ChhhhcCCCcccEEEccCCCCCCC----chhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEE
Q 005361 216 LRISDNNFSGK----IPEFIGKWKKIQKLHIQGSSLEGP----IPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTL 287 (700)
Q Consensus 216 L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L 287 (700)
+.+..|.+... +...+..+++|+.|||..|.++.. +...+..+++|+.|
T Consensus 190 vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El----------------------- 246 (382)
T KOG1909|consen 190 VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL----------------------- 246 (382)
T ss_pred EEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee-----------------------
Confidence 66665555311 122344555555555555555432 22233344444444
Q ss_pred EcccCCCCCCCchh----h-cCCCCCCEEeccCCCCCCC----ChhhHhcCCCCCEEEccCCcCC
Q 005361 288 ILTKCLIHGEIPDY----I-GDMTKLKNIDLSFNNLTGG----IPTTFEKLAKTNFMYLTGNKLT 343 (700)
Q Consensus 288 ~L~~n~l~~~~p~~----~-~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~ 343 (700)
+++.|.+...-... + ...|+|+.|.|.+|.|+.. +-..+...+.|..|+|++|.+.
T Consensus 247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 45555544322211 1 2357788888888887732 2233455778888888888883
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=9.4e-11 Score=118.98 Aligned_cols=183 Identities=18% Similarity=0.180 Sum_probs=98.1
Q ss_pred CCCCCCEEEccCCcCCCCCC-ccccCCCCccEEEeeecCCCCc--CchhhhCCCCCcEEEeecCcCCCCChhh-hcCCCc
Q 005361 161 NITTLKNLSIEGNLFTGSIP-PDIRKLINLQKLILSSNSFTGE--LPAELTKLTNLNDLRISDNNFSGKIPEF-IGKWKK 236 (700)
Q Consensus 161 ~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~ 236 (700)
++.+|++..|.+..+..... .....|++++.|||+.|-+... +......||+|+.|+|+.|++....... -..++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 45566666666665542111 2344566666666666655532 1223445666777777766664221111 124556
Q ss_pred ccEEEccCCCCCCC-chhhhhcCCCCCEEEcCCCCC-CCCcccccCccCccEEEcccCCCCCCC-chhhcCCCCCCEEec
Q 005361 237 IQKLHIQGSSLEGP-IPASISALTSLTDLRISDLKG-SESAFPKLDKMNLKTLILTKCLIHGEI-PDYIGDMTKLKNIDL 313 (700)
Q Consensus 237 L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~-~~~~~~~l~~~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L 313 (700)
|+.|.|+.|.++.. +...+..+++|+.|+|..|+. .....+.-....|++|+|++|++-... -...+.++.|+.|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 77777777776631 223345567777777776632 211111111156777777777665221 123456677777777
Q ss_pred cCCCCCCCC-hhh-----HhcCCCCCEEEccCCcCC
Q 005361 314 SFNNLTGGI-PTT-----FEKLAKTNFMYLTGNKLT 343 (700)
Q Consensus 314 s~N~l~~~~-p~~-----~~~l~~L~~L~L~~N~l~ 343 (700)
+.+.+...- |+. ...+++|+.|++..|++.
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 777666321 221 245567777777777764
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.94 E-value=2e-10 Score=113.69 Aligned_cols=245 Identities=19% Similarity=0.246 Sum_probs=135.0
Q ss_pred hhhcCCCCCCEEECcCCCCCCC----ccccccccc-ccEEEccCC---CCCCCCchh-------cCCCCCCCEEEccCCc
Q 005361 110 TELSKLRYLKQLDLSRNCLTGS----FSPQWASLQ-LVELSVMGN---RLSGPFPKV-------LTNITTLKNLSIEGNL 174 (700)
Q Consensus 110 ~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~-L~~L~L~~n---~l~~~~p~~-------~~~l~~L~~L~L~~n~ 174 (700)
+.+..+..++.|+|++|.+... +...+...+ |+..++++- ++...+|+. +...++|++|+||.|-
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 3455677788888888877532 233344444 666666542 112223332 2344556666666665
Q ss_pred CCCCCCccc----cCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCC
Q 005361 175 FTGSIPPDI----RKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGP 250 (700)
Q Consensus 175 l~~~~p~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 250 (700)
+...-+..| ..+..|++|.|.+|.+...--..++. .|.+|. .....+.-++|+.+...+|++...
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEEeeccccccc
Confidence 543222222 23445555555555443110000000 000000 001123345666666666665432
Q ss_pred ----chhhhhcCCCCCEEEcCCCCCCCCcccc----cCc-cCccEEEcccCCCCC----CCchhhcCCCCCCEEeccCCC
Q 005361 251 ----IPASISALTSLTDLRISDLKGSESAFPK----LDK-MNLKTLILTKCLIHG----EIPDYIGDMTKLKNIDLSFNN 317 (700)
Q Consensus 251 ----~~~~~~~l~~L~~L~l~~n~~~~~~~~~----l~~-~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~N~ 317 (700)
+...|...+.|+.+.+..|.+....... +.. ++|+.|||..|.++. .+...+..+++|+.|++++|.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 2234555566666666666554443321 233 677777777777764 234567788999999999999
Q ss_pred CCCCChhhH-----hcCCCCCEEEccCCcCCCCCchhh------hcCCCeeeeecCccc
Q 005361 318 LTGGIPTTF-----EKLAKTNFMYLTGNKLTGPVPKYI------FNSNKNVDISLNNFT 365 (700)
Q Consensus 318 l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~ip~~~------~~~l~~L~ls~N~l~ 365 (700)
+...-...| ...|+|+.|.|.+|.++..--..+ .+.+..|+|++|.+.
T Consensus 253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 253 LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 985443332 346899999999999974222111 246789999999884
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.88 E-value=1.4e-09 Score=101.26 Aligned_cols=122 Identities=28% Similarity=0.349 Sum_probs=39.8
Q ss_pred ccEEEccCCCCCCCCchhcC-CCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhh-hCCCCCcEEEe
Q 005361 141 LVELSVMGNRLSGPFPKVLT-NITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAEL-TKLTNLNDLRI 218 (700)
Q Consensus 141 L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L 218 (700)
+++|+|.+|.|+. + +.++ .+.+|+.|+|++|.++. + ..+..+++|+.|++++|.++. +...+ ..+++|++|++
T Consensus 21 ~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 21 LRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-
T ss_pred ccccccccccccc-c-cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEEC
Confidence 5555555555552 2 1233 35566666666666663 2 245566667777777776663 33333 34667777777
Q ss_pred ecCcCCCCC-hhhhcCCCcccEEEccCCCCCCCc---hhhhhcCCCCCEEEcC
Q 005361 219 SDNNFSGKI-PEFIGKWKKIQKLHIQGSSLEGPI---PASISALTSLTDLRIS 267 (700)
Q Consensus 219 ~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~l~ 267 (700)
++|++...- -..+..+++|+.|+|.+|+++... ...+..+++|+.||-.
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 777665321 134556677777777777765321 1235667777777654
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.84 E-value=1.7e-09 Score=100.69 Aligned_cols=126 Identities=25% Similarity=0.294 Sum_probs=41.7
Q ss_pred cCCCCCCEEECcCCCCCCCcccccc-ccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccc-cCCCCc
Q 005361 113 SKLRYLKQLDLSRNCLTGSFSPQWA-SLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDI-RKLINL 189 (700)
Q Consensus 113 ~~l~~L~~L~L~~n~l~~~~~~~~~-~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L 189 (700)
.+..++++|+|.+|.|+.+. .++ .+. |+.|++++|.|+.. +.+..++.|++|++++|.++. +...+ ..+++|
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT-
T ss_pred cccccccccccccccccccc--chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcC
Confidence 33445666666666666432 222 343 66667777766632 246667777777777777773 33333 357777
Q ss_pred cEEEeeecCCCCcC-chhhhCCCCCcEEEeecCcCCCCC---hhhhcCCCcccEEEcc
Q 005361 190 QKLILSSNSFTGEL-PAELTKLTNLNDLRISDNNFSGKI---PEFIGKWKKIQKLHIQ 243 (700)
Q Consensus 190 ~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~L~ 243 (700)
+.|++++|+|...- -..+..+++|+.|+|.+|+++... ...+..+|+|+.||-.
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 77777777776321 245667788888888888776321 1235667778877643
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.77 E-value=1.6e-09 Score=104.80 Aligned_cols=130 Identities=18% Similarity=0.258 Sum_probs=84.7
Q ss_pred hhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCC
Q 005361 230 FIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKL 308 (700)
Q Consensus 230 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L 308 (700)
.+..++.|+.|||++|.++ .+.++..-++.++.|+++.|.+.... .+.. ++|+.|||++|.++ .+..+-..+-++
T Consensus 279 ~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNI 354 (490)
T ss_pred ecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhhHhhhcCE
Confidence 3445566777777777776 45566666677777777766554432 2444 67777788888777 444455567788
Q ss_pred CEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCch--hh--hcCCCeeeeecCcccc
Q 005361 309 KNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPK--YI--FNSNKNVDISLNNFTW 366 (700)
Q Consensus 309 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~--~~--~~~l~~L~ls~N~l~~ 366 (700)
+.|.|+.|.|.. -..+..+-+|..||+++|+|. .+.. .+ .+.++.+.|.+|++.+
T Consensus 355 KtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 355 KTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eeeehhhhhHhh--hhhhHhhhhheeccccccchh-hHHHhcccccccHHHHHhhcCCCccc
Confidence 888999888862 235667778888888888886 2221 11 2356677777776654
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.77 E-value=1.4e-08 Score=117.85 Aligned_cols=149 Identities=21% Similarity=0.268 Sum_probs=110.6
Q ss_pred CcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCC--CCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEE
Q 005361 92 CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNC--LTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNL 168 (700)
Q Consensus 92 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~--l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L 168 (700)
..++++.+-++.+.-. +.. ...+.|++|-+..|. +.......|..++ |++|||++|.--+.+|..++.|-+|++|
T Consensus 523 ~~~rr~s~~~~~~~~~-~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHI-AGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchhhc-cCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 4577777777766532 221 234578888888886 5656666788888 9999999887777899999999999999
Q ss_pred EccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCc--CCCCChhhhcCCCcccEEEcc
Q 005361 169 SIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNN--FSGKIPEFIGKWKKIQKLHIQ 243 (700)
Q Consensus 169 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~l~~l~~L~~L~L~ 243 (700)
+|+++.+. .+|..+.+|..|.+|++..+.....++.....|.+|++|.+.... .+...-..+..+.+|+.+...
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 99999988 789999999999999999887665667777779999999986543 222233344555666666553
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.73 E-value=4.9e-09 Score=80.08 Aligned_cols=61 Identities=33% Similarity=0.484 Sum_probs=55.6
Q ss_pred cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcC
Q 005361 282 MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKL 342 (700)
Q Consensus 282 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 342 (700)
++|++|++++|+++...+..|..+++|++|+|++|+++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4788999999999977778999999999999999999988888999999999999999975
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.65 E-value=2.6e-08 Score=115.53 Aligned_cols=204 Identities=19% Similarity=0.259 Sum_probs=142.9
Q ss_pred cCCCCCCEEECcCCCCCCCcccccccccccEEEccCCC--CCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCcc
Q 005361 113 SKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNR--LSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQ 190 (700)
Q Consensus 113 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~--l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 190 (700)
.+....+.+.+.+|.+.. ++.......|++|-+..|. +.......|..|+.|+.|||++|.--+.+|..++.|-+|+
T Consensus 520 ~~~~~~rr~s~~~~~~~~-~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEH-IAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred cchhheeEEEEeccchhh-ccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 445677888888887763 3334444469999999986 5556666788999999999999887789999999999999
Q ss_pred EEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCC--CCCchhhhhcCCCCCEEEcCC
Q 005361 191 KLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSL--EGPIPASISALTSLTDLRISD 268 (700)
Q Consensus 191 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~l~~ 268 (700)
+|++++..+. .+|..+.+|.+|.+|++..+.....++.....+++|++|.+..... ....-..+..+.+|+.+....
T Consensus 599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred cccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 9999999998 8999999999999999998876656677778899999999976542 223333445566666655543
Q ss_pred CCCCCCcccccCccC----ccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCC
Q 005361 269 LKGSESAFPKLDKMN----LKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTG 320 (700)
Q Consensus 269 n~~~~~~~~~l~~~~----L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 320 (700)
... ....+...... .+.+.+..+... ..+..+..+.+|+.|.+.++.+..
T Consensus 678 ~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 678 SSV-LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred chh-HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCch
Confidence 221 00001111122 223333333332 344556778888888888888763
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.60 E-value=3.2e-09 Score=115.16 Aligned_cols=128 Identities=24% Similarity=0.341 Sum_probs=66.0
Q ss_pred CCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEE
Q 005361 114 KLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKL 192 (700)
Q Consensus 114 ~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 192 (700)
.+..++.+.+..|.+.. +-..+..+. |+.|++.+|.|.. +...+..+++|++|+|++|.|+... .+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhhh
Confidence 34555555566665553 122233344 6666666666652 2222455666666666666665322 23445556666
Q ss_pred EeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCCh-hhhcCCCcccEEEccCCCCC
Q 005361 193 ILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIP-EFIGKWKKIQKLHIQGSSLE 248 (700)
Q Consensus 193 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~ 248 (700)
++++|.++.. ..+..+++|+.+++++|++...-+ . ...+.+|+.+++.+|.+.
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 6666666521 223345566666666666553322 1 344555555666655554
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.60 E-value=2.5e-08 Score=76.17 Aligned_cols=59 Identities=36% Similarity=0.492 Sum_probs=27.8
Q ss_pred CCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCc
Q 005361 164 TLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNN 222 (700)
Q Consensus 164 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 222 (700)
+|++|++++|+++...+..|.++++|++|++++|.++...+..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34444555554443333344444445555555444444444444444444444444443
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.59 E-value=3.5e-09 Score=114.82 Aligned_cols=192 Identities=26% Similarity=0.261 Sum_probs=126.1
Q ss_pred ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeec
Q 005361 141 LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISD 220 (700)
Q Consensus 141 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 220 (700)
++.+.+..|.+.. +-..+..+.+|..|++..|.+.. +...+..+++|++|++++|.|+... .+..++.|+.|++++
T Consensus 74 l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 74 LKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSG 149 (414)
T ss_pred HHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhhheecc
Confidence 7777788888773 33446778889999999998884 3333677889999999999888543 355677788999999
Q ss_pred CcCCCCChhhhcCCCcccEEEccCCCCCCCch-hhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCC
Q 005361 221 NNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIP-ASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEI 298 (700)
Q Consensus 221 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~ 298 (700)
|.++.. ..+..++.|+.+++++|.+...-+ . ...+.+|+.+.+.+|.+..... +.. ..+..+++..|.++..-
T Consensus 150 N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i~~~~ 224 (414)
T KOG0531|consen 150 NLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKISKLE 224 (414)
T ss_pred Ccchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccccceecc
Confidence 988732 335557888888898888875433 2 4677777888777765543321 111 33444466666665322
Q ss_pred chhhcCCC--CCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCC
Q 005361 299 PDYIGDMT--KLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTG 344 (700)
Q Consensus 299 p~~~~~l~--~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 344 (700)
+. ..+. .|+.+++++|.+. ..+..+..+..+..|++.+|++..
T Consensus 225 ~l--~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 225 GL--NELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred Cc--ccchhHHHHHHhcccCccc-cccccccccccccccchhhccccc
Confidence 21 1122 2677777777776 333455666677777777777653
No 45
>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.57 E-value=3.1e-08 Score=104.42 Aligned_cols=38 Identities=39% Similarity=0.682 Sum_probs=35.8
Q ss_pred CCCCccHHHHHHHHcCCCcCCccccCCCcceeEEEeCC
Q 005361 662 QTGLYTLRQIKAATNNFDPANKVGEGGFGSVYKVNVML 699 (700)
Q Consensus 662 ~~~~f~~~el~~AT~~Fs~~~~iG~GgfG~VYkg~L~d 699 (700)
..+.|+|+||++||+||+++++||+||||.||||.|+|
T Consensus 61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~ 98 (361)
T KOG1187|consen 61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSD 98 (361)
T ss_pred CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECC
Confidence 45679999999999999999999999999999999987
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=8.3e-08 Score=93.13 Aligned_cols=208 Identities=20% Similarity=0.236 Sum_probs=114.9
Q ss_pred hcCCCCCCEEECcCCCCCCCc-cccccc-cc-ccEEEccCCCCCC--CCchhcCCCCCCCEEEccCCcCCCCCCccccCC
Q 005361 112 LSKLRYLKQLDLSRNCLTGSF-SPQWAS-LQ-LVELSVMGNRLSG--PFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKL 186 (700)
Q Consensus 112 l~~l~~L~~L~L~~n~l~~~~-~~~~~~-l~-L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 186 (700)
+..+..++.|.+.++.|...- ...|+. .+ ++.|||.+|.|+. .+-.-+.+||.|+.|+|+.|++...+...-..+
T Consensus 41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~ 120 (418)
T KOG2982|consen 41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPL 120 (418)
T ss_pred eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccc
Confidence 344445666666666554221 112232 23 8889999998873 344456789999999999999884433222466
Q ss_pred CCccEEEeeecCCCCc-CchhhhCCCCCcEEEeecCcCCCC--ChhhhcCC-CcccEEEccCCCCCC--CchhhhhcCCC
Q 005361 187 INLQKLILSSNSFTGE-LPAELTKLTNLNDLRISDNNFSGK--IPEFIGKW-KKIQKLHIQGSSLEG--PIPASISALTS 260 (700)
Q Consensus 187 ~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l-~~L~~L~L~~n~l~~--~~~~~~~~l~~ 260 (700)
.+|+.|-|.+..+.-. ....+..+|.+++|.++.|.+... ..+....+ +.++.|++..|.... .....-.-+++
T Consensus 121 ~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn 200 (418)
T KOG2982|consen 121 KNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPN 200 (418)
T ss_pred cceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence 7899999988877633 334567888888998888854311 11111222 245555555443221 01111123456
Q ss_pred CCEEEcCCCCCCCCcccc-cCc-cCccEEEcccCCCCCC-CchhhcCCCCCCEEeccCCCCC
Q 005361 261 LTDLRISDLKGSESAFPK-LDK-MNLKTLILTKCLIHGE-IPDYIGDMTKLKNIDLSFNNLT 319 (700)
Q Consensus 261 L~~L~l~~n~~~~~~~~~-l~~-~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~ 319 (700)
+..+.+..+.+.+..-.. ... +.+..|+|+.|+|..- --+.+.+++.|..|.+++|.+.
T Consensus 201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 666666665443322211 111 3444555666655431 1234555566666666666555
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.21 E-value=4.6e-08 Score=105.37 Aligned_cols=122 Identities=25% Similarity=0.279 Sum_probs=53.9
Q ss_pred ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchh-hhCCCCCcEEEee
Q 005361 141 LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAE-LTKLTNLNDLRIS 219 (700)
Q Consensus 141 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~ 219 (700)
|.+.+.++|.+. ....++.-++.|+.|+|++|+++.. ..+..|++|++|||++|.+. .+|.. ...+ .|+.|.|+
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeeec
Confidence 444444555544 3344444455555555555555422 14455555555555555554 22221 1111 25555555
Q ss_pred cCcCCCCChhhhcCCCcccEEEccCCCCCCCc-hhhhhcCCCCCEEEcCCC
Q 005361 220 DNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPI-PASISALTSLTDLRISDL 269 (700)
Q Consensus 220 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n 269 (700)
+|.++.. ..+.++.+|+.||+++|-+.+.. -..+..+..|+.|.|.+|
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 5554421 12344455555555555444311 111233444444444444
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.20 E-value=4.3e-08 Score=105.55 Aligned_cols=179 Identities=20% Similarity=0.247 Sum_probs=93.6
Q ss_pred chhcCCCCCCCEEEccCCcCCCCCCccccCC-CCccEEEeeecCCC----------CcCchhhhCCCCCcEEEeecCcCC
Q 005361 156 PKVLTNITTLKNLSIEGNLFTGSIPPDIRKL-INLQKLILSSNSFT----------GELPAELTKLTNLNDLRISDNNFS 224 (700)
Q Consensus 156 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~n~l~----------~~~~~~~~~l~~L~~L~L~~n~l~ 224 (700)
|-.+..+.+|+.|.|.++.+.. ...+..+ ..|++|.- .|.+. |.+...+ ....|...+.+.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH
Confidence 4445566778888888777663 1112111 23444422 22222 0111111 1234666677777776
Q ss_pred CCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcC
Q 005361 225 GKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGD 304 (700)
Q Consensus 225 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~ 304 (700)
.+...+.-++.|+.|+|++|++... ..+..++.|+.|||+.|.+...+--....-.|..|.|++|.++... .+.+
T Consensus 178 -~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~--gie~ 252 (1096)
T KOG1859|consen 178 -LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLR--GIEN 252 (1096)
T ss_pred -hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhh--hHHh
Confidence 5566677777777777777777632 2566677777777776655443221111134666666666655221 1335
Q ss_pred CCCCCEEeccCCCCCCCC-hhhHhcCCCCCEEEccCCcCC
Q 005361 305 MTKLKNIDLSFNNLTGGI-PTTFEKLAKTNFMYLTGNKLT 343 (700)
Q Consensus 305 l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~ 343 (700)
+.+|+.|||++|-|.+-- -.-+..+..|+.|+|.+|.+-
T Consensus 253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 556666666666555311 112344455566666666554
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=2e-07 Score=90.47 Aligned_cols=174 Identities=19% Similarity=0.165 Sum_probs=121.6
Q ss_pred CCccEEEeeecCCCC-cCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCC-CCCC-chhhhhcCCCCCE
Q 005361 187 INLQKLILSSNSFTG-ELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSS-LEGP-IPASISALTSLTD 263 (700)
Q Consensus 187 ~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~ 263 (700)
..|++|||+...++. .+...+..+.+|+.|.|.++++.+.+-..+..-.+|+.|+|+.+. ++.. ..-.+.+++.|.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 358888888877763 233446677888889999998888888888888889999988653 4321 2234678888999
Q ss_pred EEcCCCCCCCCccccc-Cc--cCccEEEcccCCCC---CCCchhhcCCCCCCEEeccCCC-CCCCChhhHhcCCCCCEEE
Q 005361 264 LRISDLKGSESAFPKL-DK--MNLKTLILTKCLIH---GEIPDYIGDMTKLKNIDLSFNN-LTGGIPTTFEKLAKTNFMY 336 (700)
Q Consensus 264 L~l~~n~~~~~~~~~l-~~--~~L~~L~L~~n~l~---~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~ 336 (700)
|+++.+.........+ .. ++|+.|+|+++.-. ..+......+++|.+||||.|. |+...-..|..++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 9998877665554442 22 78888998886421 1222334578999999999874 4544445678889999999
Q ss_pred ccCCcCCCCCchhhh-----cCCCeeeeecC
Q 005361 337 LTGNKLTGPVPKYIF-----NSNKNVDISLN 362 (700)
Q Consensus 337 L~~N~l~~~ip~~~~-----~~l~~L~ls~N 362 (700)
|+.+.. .+|+.+. +.+.+||+-+.
T Consensus 345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 998875 4565543 35667776554
No 50
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=2.5e-07 Score=89.85 Aligned_cols=176 Identities=18% Similarity=0.228 Sum_probs=119.2
Q ss_pred CCCEEEccCCcCCC-CCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCc-CCCC-ChhhhcCCCcccEE
Q 005361 164 TLKNLSIEGNLFTG-SIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNN-FSGK-IPEFIGKWKKIQKL 240 (700)
Q Consensus 164 ~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~l~~l~~L~~L 240 (700)
.|++|||++..++. .+-.-+..+.+|+.|.|.++++...+...+..-.+|+.|+|+.+. ++.. ..-.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 58888888877762 122335677888888888888887777778888888888887653 3321 22346778888888
Q ss_pred EccCCCCCCCchhh-hhc-CCCCCEEEcCCCCC--CCCcccccCc--cCccEEEcccCC-CCCCCchhhcCCCCCCEEec
Q 005361 241 HIQGSSLEGPIPAS-ISA-LTSLTDLRISDLKG--SESAFPKLDK--MNLKTLILTKCL-IHGEIPDYIGDMTKLKNIDL 313 (700)
Q Consensus 241 ~L~~n~l~~~~~~~-~~~-l~~L~~L~l~~n~~--~~~~~~~l~~--~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L 313 (700)
+|+.+.+....... +.+ -++|+.|+++++.. ....+..+.. ++|..|||+.|. ++...-..|..++.|++|.|
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 88888776433221 222 25778888887532 2223333333 789999998874 45444446778899999999
Q ss_pred cCCCCCCCChhh---HhcCCCCCEEEccCCc
Q 005361 314 SFNNLTGGIPTT---FEKLAKTNFMYLTGNK 341 (700)
Q Consensus 314 s~N~l~~~~p~~---~~~l~~L~~L~L~~N~ 341 (700)
+.|.. ++|+. +...|.|.+|+..+.-
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 98864 46664 4566889999887753
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.92 E-value=8.4e-06 Score=78.48 Aligned_cols=111 Identities=14% Similarity=0.071 Sum_probs=58.2
Q ss_pred CcccEEEccCCCCCCCchh----hhhcCCCCCEEEcCCCCCCCCcccc-----cCc-cCccEEEcccCCCCCC----Cch
Q 005361 235 KKIQKLHIQGSSLEGPIPA----SISALTSLTDLRISDLKGSESAFPK-----LDK-MNLKTLILTKCLIHGE----IPD 300 (700)
Q Consensus 235 ~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~n~~~~~~~~~-----l~~-~~L~~L~L~~n~l~~~----~p~ 300 (700)
|.|+.....+|++..-... .+..-.+|+.+.+..|.+....+.. +.. .+|+.|||..|.++-. +..
T Consensus 157 p~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~ 236 (388)
T COG5238 157 PKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLAD 236 (388)
T ss_pred CCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHH
Confidence 4566666666655432111 1222245556665555544432222 111 5666666666666532 233
Q ss_pred hhcCCCCCCEEeccCCCCCCCChhhH------hcCCCCCEEEccCCcCCCC
Q 005361 301 YIGDMTKLKNIDLSFNNLTGGIPTTF------EKLAKTNFMYLTGNKLTGP 345 (700)
Q Consensus 301 ~~~~l~~L~~L~Ls~N~l~~~~p~~~------~~l~~L~~L~L~~N~l~~~ 345 (700)
.+..++.|+.|.+..|-++..-...+ ...|+|..|-+.+|.+.+.
T Consensus 237 al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~ 287 (388)
T COG5238 237 ALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG 287 (388)
T ss_pred HhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence 45556677777777777764333221 1346677777777766543
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.90 E-value=6.7e-07 Score=77.12 Aligned_cols=104 Identities=23% Similarity=0.236 Sum_probs=69.9
Q ss_pred EEEEEecCCCCCCcCch---hhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEE
Q 005361 94 VVTIALKAQNLTGTLPT---ELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLS 169 (700)
Q Consensus 94 v~~L~L~~~~l~~~~~~---~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 169 (700)
...++|+++.+- .++. .+....+|+..+|++|.+...++..-...+ ++.|+|++|.++ .+|..+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 445566666553 2333 345556677778888877754444434444 777888888877 5666788888888888
Q ss_pred ccCCcCCCCCCccccCCCCccEEEeeecCCC
Q 005361 170 IEGNLFTGSIPPDIRKLINLQKLILSSNSFT 200 (700)
Q Consensus 170 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 200 (700)
++.|.+. ..|..+..|.+|..|+..+|.+.
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 8888877 55666666777777777777766
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.88 E-value=8.8e-07 Score=76.42 Aligned_cols=104 Identities=21% Similarity=0.297 Sum_probs=63.5
Q ss_pred ccEEEccCCCCCCCCchh---cCCCCCCCEEEccCCcCCCCCCccccC-CCCccEEEeeecCCCCcCchhhhCCCCCcEE
Q 005361 141 LVELSVMGNRLSGPFPKV---LTNITTLKNLSIEGNLFTGSIPPDIRK-LINLQKLILSSNSFTGELPAELTKLTNLNDL 216 (700)
Q Consensus 141 L~~L~L~~n~l~~~~p~~---~~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 216 (700)
+..++|+.+++. .+++. +.....|...+|++|.+. ..|..|.. ++.++.|+|.+|.++ .+|..+..++.|+.|
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 556677777664 33333 334445666677777776 44555443 346677777777776 566667777777777
Q ss_pred EeecCcCCCCChhhhcCCCcccEEEccCCCCC
Q 005361 217 RISDNNFSGKIPEFIGKWKKIQKLHIQGSSLE 248 (700)
Q Consensus 217 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 248 (700)
+++.|.+. ..|..+..+.+|..|+..+|.+.
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 77777666 44555555666666666666555
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=4.1e-06 Score=81.60 Aligned_cols=107 Identities=25% Similarity=0.354 Sum_probs=63.9
Q ss_pred ccEEEccCCCCCCCCc-hhc-CCCCCCCEEEccCCcCCC--CCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEE
Q 005361 141 LVELSVMGNRLSGPFP-KVL-TNITTLKNLSIEGNLFTG--SIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDL 216 (700)
Q Consensus 141 L~~L~L~~n~l~~~~p-~~~-~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 216 (700)
++.|.+.++.|...-. ..| ...+.+++|||.+|.++. .+-..+.++|.|+.|+|+.|.+...+...-..+.+|+.|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 4455555555542211 112 246678888888888773 122235577888888888888774433222355677777
Q ss_pred EeecCcCCC-CChhhhcCCCcccEEEccCCCC
Q 005361 217 RISDNNFSG-KIPEFIGKWKKIQKLHIQGSSL 247 (700)
Q Consensus 217 ~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l 247 (700)
-|.+..+.- .....+..+|.+++|+++.|.+
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 777766642 2234456677777777777743
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.78 E-value=2.4e-05 Score=54.77 Aligned_cols=36 Identities=28% Similarity=0.539 Sum_probs=20.2
Q ss_pred CCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCC
Q 005361 307 KLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLT 343 (700)
Q Consensus 307 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 343 (700)
+|++|+|++|+|+ .+|+.+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4566666666666 34445566666666666666665
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.66 E-value=3.6e-05 Score=74.27 Aligned_cols=158 Identities=18% Similarity=0.102 Sum_probs=96.2
Q ss_pred hhCCCCCcEEEeecCcCCCCChh----hhcCCCcccEEEccCCCCCCCchh-------------hhhcCCCCCEEEcCCC
Q 005361 207 LTKLTNLNDLRISDNNFSGKIPE----FIGKWKKIQKLHIQGSSLEGPIPA-------------SISALTSLTDLRISDL 269 (700)
Q Consensus 207 ~~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~~-------------~~~~l~~L~~L~l~~n 269 (700)
+..+|.|+..+|++|-+....|. .+++-+.|.+|.|++|.+-...-. ...+-+.|+......|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 33455555555555554433332 233445555555555554321111 1234477899999888
Q ss_pred CCCCCcccc----cCc-cCccEEEcccCCCCCCC-----chhhcCCCCCCEEeccCCCCCCCC----hhhHhcCCCCCEE
Q 005361 270 KGSESAFPK----LDK-MNLKTLILTKCLIHGEI-----PDYIGDMTKLKNIDLSFNNLTGGI----PTTFEKLAKTNFM 335 (700)
Q Consensus 270 ~~~~~~~~~----l~~-~~L~~L~L~~n~l~~~~-----p~~~~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L 335 (700)
.+..++... +.. .+|+++.+..|.|.-.- -.-+..+.+|+.|||..|-++-.- ...+...+.|+.|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 776655433 333 68999999999886321 112345789999999999988432 2355667789999
Q ss_pred EccCCcCCCCCchhh--------hcCCCeeeeecCcc
Q 005361 336 YLTGNKLTGPVPKYI--------FNSNKNVDISLNNF 364 (700)
Q Consensus 336 ~L~~N~l~~~ip~~~--------~~~l~~L~ls~N~l 364 (700)
.+..|.++..-..++ .+++..|-..+|..
T Consensus 248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred cccchhhccccHHHHHHHhhhhcCCCccccccchhhh
Confidence 999998875433333 24566666666643
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.62 E-value=0.00018 Score=75.58 Aligned_cols=32 Identities=34% Similarity=0.478 Sum_probs=18.1
Q ss_pred cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCC
Q 005361 282 MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFN 316 (700)
Q Consensus 282 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 316 (700)
.+|+.|++++|... ..|..+. .+|+.|+++.|
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 46666666666654 2332222 46777777665
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.59 E-value=0.00033 Score=73.55 Aligned_cols=74 Identities=12% Similarity=0.195 Sum_probs=41.0
Q ss_pred hcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCC-cCCCCCCccccCCCCc
Q 005361 112 LSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGN-LFTGSIPPDIRKLINL 189 (700)
Q Consensus 112 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L 189 (700)
+..+++++.|++++|.++.. |. ... |+.|.++++.--..+|+.+. ++|++|++++| .+. .+|. +|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------cc
Confidence 44567777777777766633 31 112 77777766433234554442 46777777776 333 3342 35
Q ss_pred cEEEeeecC
Q 005361 190 QKLILSSNS 198 (700)
Q Consensus 190 ~~L~L~~n~ 198 (700)
+.|++..+.
T Consensus 115 e~L~L~~n~ 123 (426)
T PRK15386 115 RSLEIKGSA 123 (426)
T ss_pred ceEEeCCCC
Confidence 556665544
No 59
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=97.58 E-value=4.2e-05 Score=73.74 Aligned_cols=121 Identities=26% Similarity=0.451 Sum_probs=90.7
Q ss_pred eeEEeeCCcce-ecCCceeecCc-cCCccccceecCCceEEeeeecccCCCCCCCcceEecccccccccccchhhhhhhc
Q 005361 415 TLHINCGGAKI-NTGHTKYEADM-EARGASMFYSSGQYWAFSSTGKFMDDDTDLDNYIRTNTSTLSKVSAVDLELYRTAR 492 (700)
Q Consensus 415 ~~~~~c~~~~~-~~~~~~~~~~~-~~~g~s~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~tar 492 (700)
-+.+||||... ...+-.|..|+ ...|.+. +.|......+ .....+..+|+|+|
T Consensus 61 I~aVncGgdaavd~ygI~f~aD~~~~VGras-----------d~G~~l~i~~--------------raeeed~ily~ter 115 (355)
T KOG3593|consen 61 IPAVNCGGDAAVDNYGIRFAADPLEGVGRAS-----------DYGMVLGIGC--------------RAEEEDIILYQTER 115 (355)
T ss_pred hheeccCChhhhcccceEeeccccccccccC-----------Cccceeeccc--------------cCChhhhhhhhhcc
Confidence 45689999555 44566898887 4446442 2232222211 12256778999999
Q ss_pred cCCccceEEEeeecCcceEEEEEeEEEEecCCCccccCCeEEEEEEec-ceecccccccchhcCCcCccEEEeeE
Q 005361 493 VSPLSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQ-EKLVKKDFNIEDEAGGTGIPIVKNFP 566 (700)
Q Consensus 493 ~~~~~lt~~~~~~~~~~y~vrlhF~ei~~~~~~~~~~~~~rvF~iyI~-~~~~~~~~di~~~~~~~~~p~~~df~ 566 (700)
.....+.|..+..+.|.|.+-|.|||..| +..+..+|||-+| +..+.+++||....|+++.+.--...
T Consensus 116 ~neetFgyd~pik~dgdyalvlkfaevyF------~~~q~kvfdvrln~sh~vVk~ldi~~~vg~rg~AhDe~i~ 184 (355)
T KOG3593|consen 116 YNEETFGYDVPIKEDGDYALVLKFAEVYF------KTCQHKVFDVRLNCSHCVVKALDIFDQVGDRGKAHDEIIP 184 (355)
T ss_pred cchhhhcccccccCCCceehhhhHHHHHH------HhhhhhheeeeeccceeEEeccchhhhcCCCcccccceEE
Confidence 99988999999999999999999999754 4778899999999 99999999999999887776544333
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.56 E-value=6.6e-05 Score=52.51 Aligned_cols=38 Identities=26% Similarity=0.476 Sum_probs=31.7
Q ss_pred cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCC
Q 005361 282 MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTG 320 (700)
Q Consensus 282 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 320 (700)
++|++|++++|+|+ .+|..+..|++|+.|+|++|+|+.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 47899999999999 566678999999999999999983
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.47 E-value=0.00019 Score=66.65 Aligned_cols=82 Identities=24% Similarity=0.213 Sum_probs=41.4
Q ss_pred ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcC-chhhhCCCCCcEEEee
Q 005361 141 LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGEL-PAELTKLTNLNDLRIS 219 (700)
Q Consensus 141 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~ 219 (700)
...+||++|.+. --+.|..++.|.+|.|++|+|+.+-|.--.-+++|..|.|.+|+|.... -..+..+|+|++|.+-
T Consensus 44 ~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 44 FDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 444555555553 1223555666666666666666444433334455666666666554211 1123445555555555
Q ss_pred cCcCC
Q 005361 220 DNNFS 224 (700)
Q Consensus 220 ~n~l~ 224 (700)
+|+.+
T Consensus 122 ~Npv~ 126 (233)
T KOG1644|consen 122 GNPVE 126 (233)
T ss_pred CCchh
Confidence 55544
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.30 E-value=0.00037 Score=64.72 Aligned_cols=124 Identities=21% Similarity=0.249 Sum_probs=82.4
Q ss_pred ccEEEccCCCCCCCCchhcC-CCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEee
Q 005361 141 LVELSVMGNRLSGPFPKVLT-NITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRIS 219 (700)
Q Consensus 141 L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 219 (700)
-+.++|.+.++..+ .. ++ -+.+...+||++|.+.. -..|..++.|.+|.|++|+|+.+-|.--.-+++|..|.|.
T Consensus 21 e~e~~LR~lkip~i-en-lg~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIPVI-EN-LGATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccccch-hh-ccccccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 44555555554411 11 22 24467788999998763 2457788899999999999987766655667889999999
Q ss_pred cCcCCCCC-hhhhcCCCcccEEEccCCCCCCCch---hhhhcCCCCCEEEcCC
Q 005361 220 DNNFSGKI-PEFIGKWKKIQKLHIQGSSLEGPIP---ASISALTSLTDLRISD 268 (700)
Q Consensus 220 ~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~ 268 (700)
+|++...- -+.+..+|+|++|.+-+|..+..-- -.+..+++|+.||++.
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 98876221 1236678888999888887763211 1245567777777664
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.12 E-value=0.00024 Score=80.90 Aligned_cols=129 Identities=22% Similarity=0.256 Sum_probs=69.0
Q ss_pred ccEEEccCCCCC-CCCchhcC-CCCCCCEEEccCCcCCCC-CCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEE
Q 005361 141 LVELSVMGNRLS-GPFPKVLT-NITTLKNLSIEGNLFTGS-IPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLR 217 (700)
Q Consensus 141 L~~L~L~~n~l~-~~~p~~~~-~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 217 (700)
|+.|++++.... ..-|..++ .+|+|+.|.+.+-.+... ...-..++++|..||+|+.+++.. ..++.|++|+.|.
T Consensus 124 L~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 124 LQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLS 201 (699)
T ss_pred hhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHh
Confidence 777777665432 11222222 367777777766554311 112234567777777777766633 4566677777776
Q ss_pred eecCcCCC-CChhhhcCCCcccEEEccCCCCCCCc--h----hhhhcCCCCCEEEcCCCCC
Q 005361 218 ISDNNFSG-KIPEFIGKWKKIQKLHIQGSSLEGPI--P----ASISALTSLTDLRISDLKG 271 (700)
Q Consensus 218 L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~--~----~~~~~l~~L~~L~l~~n~~ 271 (700)
+.+=.+.. ..-..+.++++|+.||+|........ . +.-..|++|+.||.++...
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 65544432 12234556677777777665443211 1 1123466777777765443
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.98 E-value=0.00049 Score=78.39 Aligned_cols=104 Identities=27% Similarity=0.359 Sum_probs=54.9
Q ss_pred CCCCEEEccCCcCCCCC-Ccccc-CCCCccEEEeeecCCCCc-CchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccE
Q 005361 163 TTLKNLSIEGNLFTGSI-PPDIR-KLINLQKLILSSNSFTGE-LPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQK 239 (700)
Q Consensus 163 ~~L~~L~L~~n~l~~~~-p~~~~-~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 239 (700)
.+|++|++++......- |..++ -||+|+.|.+.+-.+... +-....++|+|..||+++.+++.. ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 36777777765432111 11222 356777777666544321 122334566666666666666532 44566666666
Q ss_pred EEccCCCCCC-CchhhhhcCCCCCEEEcCC
Q 005361 240 LHIQGSSLEG-PIPASISALTSLTDLRISD 268 (700)
Q Consensus 240 L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~ 268 (700)
|.+.+=.+.. ..-..+.+|++|+.||+|.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISR 229 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccc
Confidence 6666554442 1222344566666666654
No 65
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=96.97 E-value=0.0056 Score=64.51 Aligned_cols=98 Identities=30% Similarity=0.428 Sum_probs=66.4
Q ss_pred ccchhhhhhhccCC--ccceEEEeee--cCcceEEEEEeEEEEecCCCcccc-CCeEEEEEEecceecccccccchhcCC
Q 005361 482 AVDLELYRTARVSP--LSLTYYGLCL--GNGNYTVRLHFAEIIFKNDSTFNS-LGKRIFDIYIQEKLVKKDFNIEDEAGG 556 (700)
Q Consensus 482 ~~~~~ly~tar~~~--~~lt~~~~~~--~~~~y~vrlhF~ei~~~~~~~~~~-~~~rvF~iyI~~~~~~~~~di~~~~~~ 556 (700)
.....+|+|||.-+ ..-+|.+++. .++.|+||+||--.-.. ...+.. ...-.|+++++...- ..+++.. .
T Consensus 45 ~~~~~~y~taR~F~~g~r~cY~l~~~~~~~~~yliRl~F~~gnyd-~~~fs~~~~~~~FdL~~~~n~~-~tV~~~~---~ 119 (347)
T PF12819_consen 45 SDSSPPYQTARIFPEGSRNCYTLPVTPPGGGKYLIRLHFYYGNYD-GLNFSVSSSPPTFDLLLGFNFW-STVNLSN---S 119 (347)
T ss_pred CccccccceEEEcCCCCccEEEeeccCCCCceEEEEEEecccccc-ccccccccCCcceEEEECCcee-EEEEecC---C
Confidence 45678999999987 6799999998 55699999999875222 111111 234569999985432 1122211 1
Q ss_pred cCccEEEeeEEEec-CCccEEEEEEccCc
Q 005361 557 TGIPIVKNFPAEVT-SHTLKIHLYWAGRG 584 (700)
Q Consensus 557 ~~~p~~~df~v~~~-~~~~~i~~~~~~~~ 584 (700)
...++++.|.+.+. ++.+.|.+...+.+
T Consensus 120 ~~~~~~~E~ii~v~~~~~l~vclv~~~~g 148 (347)
T PF12819_consen 120 PSSPVVKEFIINVTWSDTLSVCLVPTGSG 148 (347)
T ss_pred CcceEEEEEEEEEcCCCcEEEEEEeCCCC
Confidence 22689999999998 68888888776653
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.82 E-value=0.0019 Score=57.43 Aligned_cols=59 Identities=10% Similarity=0.179 Sum_probs=18.4
Q ss_pred hhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEcc
Q 005361 111 ELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIE 171 (700)
Q Consensus 111 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 171 (700)
+|.+.++|+.+.+.. .+..+....|.... |+.+.+.++ +.......|.++++|+.+.+.
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 344444555555442 23323333333332 444444332 322223334444444444443
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.65 E-value=0.0031 Score=56.04 Aligned_cols=105 Identities=13% Similarity=0.207 Sum_probs=40.5
Q ss_pred cccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCC
Q 005361 135 QWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNL 213 (700)
Q Consensus 135 ~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 213 (700)
.|.... |+.+.+.. .+..+....|.++++|+.+.+..+ +.......|.++++|+.+.+.. .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344442 55555553 344344444555555666665553 4333334455555566665543 3332333345555555
Q ss_pred cEEEeecCcCCCCChhhhcCCCcccEEEccC
Q 005361 214 NDLRISDNNFSGKIPEFIGKWKKIQKLHIQG 244 (700)
Q Consensus 214 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 244 (700)
+.+++..+ +.......|.+. +|+.+.+..
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 55555443 332223334444 555555543
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.49 E-value=0.0017 Score=62.95 Aligned_cols=42 Identities=29% Similarity=0.377 Sum_probs=19.6
Q ss_pred cCCCCCCCEEEccCC--cCCCCCCccccCCCCccEEEeeecCCC
Q 005361 159 LTNITTLKNLSIEGN--LFTGSIPPDIRKLINLQKLILSSNSFT 200 (700)
Q Consensus 159 ~~~l~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~L~~n~l~ 200 (700)
|..|++|++|.++.| ++.+-++.-...+++|++|+++.|++.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 334555555555555 333333333333455555555555443
No 69
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=96.42 E-value=0.005 Score=42.82 Aligned_cols=35 Identities=40% Similarity=0.879 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHhcCC------CCCCCC--CCCCCCCCCCcccCCCCCCCCCCeeeC
Q 005361 37 HAEEVKALKQIGRKLGK------KDWNFG--VDPCSQKGNWELSSDDKKGFESNVTCD 86 (700)
Q Consensus 37 ~~~e~~al~~l~~~~~~------~~w~~~--~d~C~~~~~w~~~~~~~~~~~~~v~C~ 86 (700)
+++|++||++|++.+.. .+|... .++| .| .||+|+
T Consensus 1 ~~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C----~W-----------~GV~Cd 43 (43)
T PF08263_consen 1 PNQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPC----SW-----------SGVTCD 43 (43)
T ss_dssp -HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CC----CS-----------TTEEE-
T ss_pred CcHHHHHHHHHHHhcccccCcccccCCCcCCCCCe----ee-----------ccEEeC
Confidence 46899999999999863 579876 7899 68 899995
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.21 E-value=0.0026 Score=61.75 Aligned_cols=61 Identities=25% Similarity=0.425 Sum_probs=26.9
Q ss_pred CCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecC--cCCCCChhhhcCCCcccEEEccCCCCC
Q 005361 186 LINLQKLILSSNSFTGELPAELTKLTNLNDLRISDN--NFSGKIPEFIGKWKKIQKLHIQGSSLE 248 (700)
Q Consensus 186 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~l~~l~~L~~L~L~~n~l~ 248 (700)
+..|+.|.+.+..++.. ..|-.|++|+.|.++.| +..+.++-....+++|++|++++|++.
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 34444454444444311 12334455555555555 333333333333455555555555444
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.48 E-value=0.00077 Score=65.57 Aligned_cols=80 Identities=20% Similarity=0.289 Sum_probs=47.2
Q ss_pred CCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcC-chhhhCCCCCcEEEeecCcCCCCChh-----hhcC
Q 005361 160 TNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGEL-PAELTKLTNLNDLRISDNNFSGKIPE-----FIGK 233 (700)
Q Consensus 160 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~-----~l~~ 233 (700)
..|+.|+.|.|+-|+|+.. ..|..+++|++|+|..|.|...- -..+.++++|+.|.|..|.-.+.-+. .+.-
T Consensus 38 ~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~ 115 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRV 115 (388)
T ss_pred HhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHH
Confidence 3455666666666666532 23455666666666666665221 13456777777777777776654432 3456
Q ss_pred CCcccEEE
Q 005361 234 WKKIQKLH 241 (700)
Q Consensus 234 l~~L~~L~ 241 (700)
+|+|+.||
T Consensus 116 LPnLkKLD 123 (388)
T KOG2123|consen 116 LPNLKKLD 123 (388)
T ss_pred cccchhcc
Confidence 67777765
No 72
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=95.45 E-value=0.0084 Score=75.65 Aligned_cols=66 Identities=23% Similarity=0.352 Sum_probs=41.3
Q ss_pred ccCCcCCCCCchhhhc---CCCeeeeecCcccccCCCCCCCCCCCccceecccCCCCCCCCcccccccCCCCCCCCCCcc
Q 005361 337 LTGNKLTGPVPKYIFN---SNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPADQYH 413 (700)
Q Consensus 337 L~~N~l~~~ip~~~~~---~l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~ 413 (700)
|++|+|+ .+|...+. +|+.|+|++| ||.|+|...||..|+...+..... .....|..|...++
T Consensus 2 LSnN~Ls-tLp~g~F~~L~sL~~LdLsgN--------Pw~CDC~L~WL~~WL~~~~v~v~~-----~~~i~CasP~~LrG 67 (2740)
T TIGR00864 2 ISNNKIS-TIEEGICANLCNLSEIDLSGN--------PFECDCGLARLPRWAEEKGVKVRQ-----PEAALCAGPGALAG 67 (2740)
T ss_pred CCCCcCC-ccChHHhccCCCceEEEeeCC--------ccccccccHHHHHHHHhcCccccC-----CcccCCCCChHHCC
Confidence 4555555 44444433 3456666666 666999999999999876433221 24567888876655
Q ss_pred eee
Q 005361 414 YTL 416 (700)
Q Consensus 414 ~~~ 416 (700)
..+
T Consensus 68 ~~L 70 (2740)
T TIGR00864 68 QPL 70 (2740)
T ss_pred CCc
Confidence 444
No 73
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.22 E-value=0.0018 Score=63.06 Aligned_cols=100 Identities=21% Similarity=0.251 Sum_probs=68.6
Q ss_pred CCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCC-hhhhcCCCcccEE
Q 005361 162 ITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKI-PEFIGKWKKIQKL 240 (700)
Q Consensus 162 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L 240 (700)
+.+.+.|++-++.++.+ .....++.|+.|.|+-|.|+.. ..+..+++|++|+|..|.|.... -..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 45667777777776632 2234678888888888888743 34677888888888888876321 1345778888888
Q ss_pred EccCCCCCCCchh-----hhhcCCCCCEEE
Q 005361 241 HIQGSSLEGPIPA-----SISALTSLTDLR 265 (700)
Q Consensus 241 ~L~~n~l~~~~~~-----~~~~l~~L~~L~ 265 (700)
+|..|.-.+..+. .+..|++|+.|+
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8888877665443 356677887776
No 74
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=94.76 E-value=0.026 Score=62.87 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=28.7
Q ss_pred CCccHHHHHHHHcCCCc---------CCccccCCCcceeEEEeC
Q 005361 664 GLYTLRQIKAATNNFDP---------ANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 664 ~~f~~~el~~AT~~Fs~---------~~~iG~GgfG~VYkg~L~ 698 (700)
.-+||++=-.|-..|.. +.+||.|-||.||+|.|.
T Consensus 608 DP~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk 651 (996)
T KOG0196|consen 608 DPHTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLK 651 (996)
T ss_pred CCccccCccHHHHHhhhhcChhheEEEEEEecccccceeccccc
Confidence 34889888888777764 468999999999999984
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.86 E-value=0.00082 Score=73.31 Aligned_cols=61 Identities=21% Similarity=0.222 Sum_probs=32.4
Q ss_pred ccEEEcccCCCCCC----CchhhcCC-CCCCEEeccCCCCCCCC----hhhHhcCCCCCEEEccCCcCCC
Q 005361 284 LKTLILTKCLIHGE----IPDYIGDM-TKLKNIDLSFNNLTGGI----PTTFEKLAKTNFMYLTGNKLTG 344 (700)
Q Consensus 284 L~~L~L~~n~l~~~----~p~~~~~l-~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~L~~N~l~~ 344 (700)
+..|++.+|.+... ....+..+ ..++.++++.|.|+..- ...+..+++++.+.+++|.+..
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 44466666665432 11223333 45566666666666432 2344455666666666666653
No 76
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=93.83 E-value=0.0086 Score=62.76 Aligned_cols=19 Identities=32% Similarity=0.602 Sum_probs=16.8
Q ss_pred CCccccCCCcceeEEEeCC
Q 005361 681 ANKVGEGGFGSVYKVNVML 699 (700)
Q Consensus 681 ~~~iG~GgfG~VYkg~L~d 699 (700)
-.+||+|+||.||||.|.+
T Consensus 215 ~eli~~Grfg~V~KaqL~~ 233 (534)
T KOG3653|consen 215 LELIGRGRFGCVWKAQLDN 233 (534)
T ss_pred HHHhhcCccceeehhhccC
Confidence 4589999999999999975
No 77
>PLN03224 probable serine/threonine protein kinase; Provisional
Probab=93.75 E-value=0.026 Score=62.34 Aligned_cols=24 Identities=25% Similarity=0.581 Sum_probs=21.8
Q ss_pred HHcCCCcCCccccCCCcceeEEEe
Q 005361 674 ATNNFDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 674 AT~~Fs~~~~iG~GgfG~VYkg~L 697 (700)
.+++|...++||+||||+||||.+
T Consensus 143 ~~d~F~i~~~LG~GgFG~VYkG~~ 166 (507)
T PLN03224 143 SSDDFQLRDKLGGGNFGITFEGLR 166 (507)
T ss_pred cccCceEeeEeecCCCeEEEEEEe
Confidence 367899999999999999999975
No 78
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.33 E-value=0.02 Score=33.26 Aligned_cols=6 Identities=50% Similarity=0.883 Sum_probs=2.1
Q ss_pred EEccCC
Q 005361 335 MYLTGN 340 (700)
Q Consensus 335 L~L~~N 340 (700)
|+|++|
T Consensus 5 Ldls~n 10 (22)
T PF00560_consen 5 LDLSGN 10 (22)
T ss_dssp EEETSS
T ss_pred EECCCC
Confidence 333333
No 79
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=92.88 E-value=0.0085 Score=61.87 Aligned_cols=250 Identities=17% Similarity=0.123 Sum_probs=132.8
Q ss_pred CcEEEEEecCCCCCCcC--chhhcCCCCCCEEECcCCC-CCCCcccccccc-c-ccEEEccCC-CCCCCCch-hcCCCCC
Q 005361 92 CHVVTIALKAQNLTGTL--PTELSKLRYLKQLDLSRNC-LTGSFSPQWASL-Q-LVELSVMGN-RLSGPFPK-VLTNITT 164 (700)
Q Consensus 92 ~~v~~L~L~~~~l~~~~--~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l-~-L~~L~L~~n-~l~~~~p~-~~~~l~~ 164 (700)
+.++.|.+.+..-.+.- -....+.|+++.|.+.++. +++..-..+... + |+.|++..+ .++...-. -...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 57888999887654432 2334678999999888875 232222222222 3 888888774 34433222 2346788
Q ss_pred CCEEEccCCcC-CC-CCCccccCCCCccEEEeeecCCCCcCchhh----hCCCCCcEEEeecCc-CCCCC-hhhhcCCCc
Q 005361 165 LKNLSIEGNLF-TG-SIPPDIRKLINLQKLILSSNSFTGELPAEL----TKLTNLNDLRISDNN-FSGKI-PEFIGKWKK 236 (700)
Q Consensus 165 L~~L~L~~n~l-~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~n~-l~~~~-~~~l~~l~~ 236 (700)
|++|+++.+.- ++ .+..-+.++..++.+.+.++.=. ....+ .....+..+++..+. ++..- -..-..+..
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~ 295 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA 295 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence 88888887642 22 11123445666666666654211 11112 233445555554442 32111 111234567
Q ss_pred ccEEEccCCCCCC-Cchhh-hhcCCCCCEEEcCCCCC-CCCcccccCc--cCccEEEcccCCCCC--CCchhhcCCCCCC
Q 005361 237 IQKLHIQGSSLEG-PIPAS-ISALTSLTDLRISDLKG-SESAFPKLDK--MNLKTLILTKCLIHG--EIPDYIGDMTKLK 309 (700)
Q Consensus 237 L~~L~L~~n~l~~-~~~~~-~~~l~~L~~L~l~~n~~-~~~~~~~l~~--~~L~~L~L~~n~l~~--~~p~~~~~l~~L~ 309 (700)
|+.|..+++...+ ..-.. -.+..+|+.|-+..+.. +...+..+.. ..|+.+++..+.... .+...-.+++.|+
T Consensus 296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr 375 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR 375 (483)
T ss_pred hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence 7777777654322 12122 24567788887777543 3333344433 667777777765431 1222234567777
Q ss_pred EEeccCCCCCCCC-----hhhHhcCCCCCEEEccCCcCC
Q 005361 310 NIDLSFNNLTGGI-----PTTFEKLAKTNFMYLTGNKLT 343 (700)
Q Consensus 310 ~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~L~~N~l~ 343 (700)
.|.|+++.+.... ...-..+..|+.+.|++...+
T Consensus 376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI 414 (483)
T ss_pred cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc
Confidence 7777776554221 111234556677777776654
No 80
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.06 E-value=0.065 Score=31.04 Aligned_cols=12 Identities=67% Similarity=0.733 Sum_probs=5.7
Q ss_pred CCEEeccCCCCC
Q 005361 308 LKNIDLSFNNLT 319 (700)
Q Consensus 308 L~~L~Ls~N~l~ 319 (700)
|++|||++|+|+
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 444444444444
No 81
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.03 E-value=0.053 Score=60.14 Aligned_cols=139 Identities=18% Similarity=0.213 Sum_probs=62.6
Q ss_pred CCCCccEEEeeecC-CCCcCchhhh-CCCCCcEEEeecCc-CCCC-ChhhhcCCCcccEEEccCCCCCC--CchhhhhcC
Q 005361 185 KLINLQKLILSSNS-FTGELPAELT-KLTNLNDLRISDNN-FSGK-IPEFIGKWKKIQKLHIQGSSLEG--PIPASISAL 258 (700)
Q Consensus 185 ~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~L~~n~-l~~~-~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~l 258 (700)
.+++|+.|+++.+. ++...-..+. .+++|+.|.+..+. ++.. +-.....++.|+.|+|+.+.... .+.....++
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c 320 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNC 320 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhC
Confidence 34556666666555 3322222222 25566666655544 3321 12223445566666666554321 122223345
Q ss_pred CCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCC---CCCchhhcCCCCCCEEeccCCCCCCCC-hhhHhcCCCC
Q 005361 259 TSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIH---GEIPDYIGDMTKLKNIDLSFNNLTGGI-PTTFEKLAKT 332 (700)
Q Consensus 259 ~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~---~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L 332 (700)
++|+.|.+..... ...++.+.+...... ....-....+++|+.+.|..+.+.... -..+.+++.|
T Consensus 321 ~~l~~l~~~~~~~---------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 321 PNLRELKLLSLNG---------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred cchhhhhhhhcCC---------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 5555544333111 012333333332221 112224556777787777777744322 2344555555
No 82
>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]
Probab=91.57 E-value=0.043 Score=61.51 Aligned_cols=17 Identities=41% Similarity=0.692 Sum_probs=15.6
Q ss_pred CCccccCCCcceeEEEe
Q 005361 681 ANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 681 ~~~iG~GgfG~VYkg~L 697 (700)
..+||.|.||+||||+.
T Consensus 701 ~kvLGsgAfGtV~kGiw 717 (1177)
T KOG1025|consen 701 DKVLGSGAFGTVYKGIW 717 (1177)
T ss_pred hceeccccceeEEeeeE
Confidence 67999999999999985
No 83
>PLN03225 Serine/threonine-protein kinase SNT7; Provisional
Probab=91.24 E-value=0.077 Score=59.99 Aligned_cols=25 Identities=40% Similarity=0.812 Sum_probs=23.0
Q ss_pred HHcCCCcCCccccCCCcceeEEEeC
Q 005361 674 ATNNFDPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 674 AT~~Fs~~~~iG~GgfG~VYkg~L~ 698 (700)
++++|...++||+||||.||||++.
T Consensus 130 ~~~~y~l~~~LG~G~FG~VYka~~~ 154 (566)
T PLN03225 130 KKDDFVLGKKLGEGAFGVVYKASLV 154 (566)
T ss_pred ccCCeEEeEEEeeCCCeEEEEEEEc
Confidence 6789999999999999999999874
No 84
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.72 E-value=0.0067 Score=66.30 Aligned_cols=180 Identities=21% Similarity=0.265 Sum_probs=114.0
Q ss_pred EEEEEecCCCCCCc----CchhhcCCCCCCEEECcCCCCCCCc----ccccccc-c-ccEEEccCCCCCC----CCchhc
Q 005361 94 VVTIALKAQNLTGT----LPTELSKLRYLKQLDLSRNCLTGSF----SPQWASL-Q-LVELSVMGNRLSG----PFPKVL 159 (700)
Q Consensus 94 v~~L~L~~~~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~----~~~~~~l-~-L~~L~L~~n~l~~----~~p~~~ 159 (700)
+..+.|.+|.+... +-..+...+.|+.|++++|.+.+.- -..+... . +++|++..|.++. .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 66778888887654 3345677889999999999887421 1222332 3 7888888888764 355566
Q ss_pred CCCCCCCEEEccCCcCCC----CCCccc----cCCCCccEEEeeecCCCCcC----chhhhCCCC-CcEEEeecCcCCCC
Q 005361 160 TNITTLKNLSIEGNLFTG----SIPPDI----RKLINLQKLILSSNSFTGEL----PAELTKLTN-LNDLRISDNNFSGK 226 (700)
Q Consensus 160 ~~l~~L~~L~L~~n~l~~----~~p~~~----~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~-L~~L~L~~n~l~~~ 226 (700)
.....|+.++++.|.+.. .++..+ ....++++|.++++.++... ...+...+. +..|++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 668889999999988741 122223 34677888888888776321 223444455 66678888777633
Q ss_pred ----ChhhhcCC-CcccEEEccCCCCCCC----chhhhhcCCCCCEEEcCCCCCCC
Q 005361 227 ----IPEFIGKW-KKIQKLHIQGSSLEGP----IPASISALTSLTDLRISDLKGSE 273 (700)
Q Consensus 227 ----~~~~l~~l-~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~ 273 (700)
....+..+ ..++.++++.|.+... ....+..++.++.|.+..|.+..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 12233444 5677888888877653 33444556667777776655443
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.42 E-value=0.0087 Score=56.93 Aligned_cols=84 Identities=23% Similarity=0.264 Sum_probs=39.5
Q ss_pred hhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCc
Q 005361 111 ELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINL 189 (700)
Q Consensus 111 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 189 (700)
++..+...+.||++.|++.. ...-|.-+. |..|+++.|.+. ..|..++.+..++.+++..|..+ ..|.+++.++++
T Consensus 37 ei~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 44555666666666665542 222233333 555555555544 34444444444444444444443 334444444444
Q ss_pred cEEEeeec
Q 005361 190 QKLILSSN 197 (700)
Q Consensus 190 ~~L~L~~n 197 (700)
+++++-.|
T Consensus 114 k~~e~k~~ 121 (326)
T KOG0473|consen 114 KKNEQKKT 121 (326)
T ss_pred chhhhccC
Confidence 44444333
No 86
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.19 E-value=0.18 Score=27.09 Aligned_cols=13 Identities=54% Similarity=0.749 Sum_probs=4.6
Q ss_pred CCCEEeccCCCCC
Q 005361 307 KLKNIDLSFNNLT 319 (700)
Q Consensus 307 ~L~~L~Ls~N~l~ 319 (700)
+|+.|+|++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 87
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.34 E-value=0.35 Score=29.18 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=9.8
Q ss_pred CCCCEEEccCCcCCCCCchhh
Q 005361 330 AKTNFMYLTGNKLTGPVPKYI 350 (700)
Q Consensus 330 ~~L~~L~L~~N~l~~~ip~~~ 350 (700)
++|+.|+|++|+|+ .+|...
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHH
Confidence 34555555555555 444433
No 88
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.34 E-value=0.35 Score=29.18 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=9.8
Q ss_pred CCCCEEEccCCcCCCCCchhh
Q 005361 330 AKTNFMYLTGNKLTGPVPKYI 350 (700)
Q Consensus 330 ~~L~~L~L~~N~l~~~ip~~~ 350 (700)
++|+.|+|++|+|+ .+|...
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHH
Confidence 34555555555555 444433
No 89
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.03 E-value=0.0096 Score=56.65 Aligned_cols=88 Identities=18% Similarity=0.196 Sum_probs=58.0
Q ss_pred hcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcc
Q 005361 158 VLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKI 237 (700)
Q Consensus 158 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 237 (700)
.+......+.||++.|++. .+-..|.-++.|..|+++.|.+. ..|..++.+..++.+++..|.++ ..|.+++..+.+
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 3445556667777777665 34455666667777777777766 56666777667777777666665 566677777777
Q ss_pred cEEEccCCCCC
Q 005361 238 QKLHIQGSSLE 248 (700)
Q Consensus 238 ~~L~L~~n~l~ 248 (700)
+++++..|.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 77777766643
No 90
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.27 E-value=0.48 Score=28.57 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=15.5
Q ss_pred CCCCCEEeccCCCCCCCChhhH
Q 005361 305 MTKLKNIDLSFNNLTGGIPTTF 326 (700)
Q Consensus 305 l~~L~~L~Ls~N~l~~~~p~~~ 326 (700)
+++|+.|+|++|+|+...+..|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4678888888888885544444
No 91
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.27 E-value=0.48 Score=28.57 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=15.5
Q ss_pred CCCCCEEeccCCCCCCCChhhH
Q 005361 305 MTKLKNIDLSFNNLTGGIPTTF 326 (700)
Q Consensus 305 l~~L~~L~Ls~N~l~~~~p~~~ 326 (700)
+++|+.|+|++|+|+...+..|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4678888888888885544444
No 92
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=84.70 E-value=0.39 Score=52.43 Aligned_cols=26 Identities=23% Similarity=0.540 Sum_probs=20.7
Q ss_pred ccHHHHHHHHcCCCcCCccccCCCcceeEEEeC
Q 005361 666 YTLRQIKAATNNFDPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 666 f~~~el~~AT~~Fs~~~~iG~GgfG~VYkg~L~ 698 (700)
..++|++- ..+||+|.||+||||...
T Consensus 389 Ip~~ev~l-------~~rIGsGsFGtV~Rg~wh 414 (678)
T KOG0193|consen 389 IPPEEVLL-------GERIGSGSFGTVYRGRWH 414 (678)
T ss_pred cCHHHhhc-------cceeccccccceeecccc
Confidence 56666664 468999999999999863
No 93
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.23 E-value=0.45 Score=44.82 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=28.2
Q ss_pred CcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCC
Q 005361 92 CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCL 128 (700)
Q Consensus 92 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l 128 (700)
..|+.++-++..|...--..+.+++.|+.|.+.++.-
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~ 137 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKY 137 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccc
Confidence 3588899888888766556678888888888877753
No 94
>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]
Probab=81.60 E-value=5.3 Score=41.61 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=24.1
Q ss_pred HHHHHHHHcCCCcCCccccCCCcceeEEEeC
Q 005361 668 LRQIKAATNNFDPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 668 ~~el~~AT~~Fs~~~~iG~GgfG~VYkg~L~ 698 (700)
.+||..--..|--+.++-+|-||.||+|++.
T Consensus 276 ~~~l~v~r~Rv~l~~llqEGtFGri~~gI~~ 306 (563)
T KOG1024|consen 276 LQELTVQRCRVRLSCLLQEGTFGRIYRGIWR 306 (563)
T ss_pred HHhhhhhhhheechhhhhcCchhheeeeeec
Confidence 3455555566777889999999999999874
No 95
>PTZ00284 protein kinase; Provisional
Probab=81.30 E-value=0.39 Score=53.20 Aligned_cols=30 Identities=30% Similarity=0.411 Sum_probs=24.4
Q ss_pred HHHHHHHHcCCCcCCccccCCCcceeEEEe
Q 005361 668 LRQIKAATNNFDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 668 ~~el~~AT~~Fs~~~~iG~GgfG~VYkg~L 697 (700)
.+++..++++|....+||+|+||+||+++.
T Consensus 121 ~~~~~~~~~~y~i~~~lG~G~fg~V~~a~~ 150 (467)
T PTZ00284 121 GEDIDVSTQRFKILSLLGEGTFGKVVEAWD 150 (467)
T ss_pred CCccccCCCcEEEEEEEEeccCEEEEEEEE
Confidence 344555678888889999999999999975
No 96
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=81.18 E-value=0.52 Score=52.18 Aligned_cols=12 Identities=33% Similarity=0.379 Sum_probs=5.1
Q ss_pred CCCCCEEeccCC
Q 005361 305 MTKLKNIDLSFN 316 (700)
Q Consensus 305 l~~L~~L~Ls~N 316 (700)
+++|++|+|+++
T Consensus 294 ~~~L~~L~l~~c 305 (482)
T KOG1947|consen 294 CPSLRELDLSGC 305 (482)
T ss_pred cCcccEEeeecC
Confidence 334444444443
No 97
>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=77.95 E-value=1.1 Score=48.61 Aligned_cols=18 Identities=44% Similarity=0.870 Sum_probs=16.1
Q ss_pred CCccccCCCcceeEEEeC
Q 005361 681 ANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 681 ~~~iG~GgfG~VYkg~L~ 698 (700)
..+||+|.||.||+|.|.
T Consensus 162 ~kkLGeGaFGeV~~G~l~ 179 (474)
T KOG0194|consen 162 GKKLGEGAFGEVFKGKLK 179 (474)
T ss_pred cceeecccccEEEEEEEE
Confidence 379999999999999984
No 98
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.59 E-value=0.43 Score=44.93 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=18.4
Q ss_pred cccEEEccCCCCCCCchhhhhcCCCCCEEEcCCC
Q 005361 236 KIQKLHIQGSSLEGPIPASISALTSLTDLRISDL 269 (700)
Q Consensus 236 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 269 (700)
.++.++-++..+..+--+.+.+++.++.|.+.++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 3555555555555444444555555555555553
No 99
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=77.29 E-value=1.1 Score=32.17 Aligned_cols=36 Identities=17% Similarity=0.324 Sum_probs=23.8
Q ss_pred CCCCCCCCCccceecccCCCCCCCCcccccccCCCCCCCCCC
Q 005361 370 DPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPADQ 411 (700)
Q Consensus 370 ~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~ 411 (700)
++|.|+|...|++.|+... ..+. ....+.|..|...
T Consensus 1 NP~~CdC~l~~~~~w~~~~-~~~~-----~~~~~~C~~P~~~ 36 (51)
T smart00082 1 NPFICDCELRWLLRWLQAN-EHLQ-----DPVSLRCASPSSL 36 (51)
T ss_pred CCccCcCCchHHHHHHHhC-CccC-----CCCCCEeCCcHHH
Confidence 3788999999999998762 1111 1235677776543
No 100
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=76.30 E-value=0.47 Score=28.02 Aligned_cols=13 Identities=46% Similarity=0.690 Sum_probs=4.8
Q ss_pred CCCEEeccCCCCC
Q 005361 307 KLKNIDLSFNNLT 319 (700)
Q Consensus 307 ~L~~L~Ls~N~l~ 319 (700)
+|++|+|++|+|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
No 101
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=74.52 E-value=1.7 Score=49.21 Aligned_cols=19 Identities=37% Similarity=0.686 Sum_probs=16.3
Q ss_pred CCccccCCCcceeEEEeCC
Q 005361 681 ANKVGEGGFGSVYKVNVML 699 (700)
Q Consensus 681 ~~~iG~GgfG~VYkg~L~d 699 (700)
.+.||+|+||+||-|.-.|
T Consensus 999 ~relg~gsfg~Vy~g~~nn 1017 (1025)
T KOG4258|consen 999 GRELGQGSFGMVYEGNANN 1017 (1025)
T ss_pred hhhhccCccceEEEecCCc
Confidence 6799999999999997543
No 102
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=74.48 E-value=1.5 Score=39.18 Aligned_cols=12 Identities=8% Similarity=0.592 Sum_probs=7.6
Q ss_pred HcCCCcCCcccc
Q 005361 675 TNNFDPANKVGE 686 (700)
Q Consensus 675 T~~Fs~~~~iG~ 686 (700)
+++|..+.-||.
T Consensus 111 ~~~y~s~splg~ 122 (154)
T PF04478_consen 111 SDKYESNSPLGS 122 (154)
T ss_pred ccccccCCCCCC
Confidence 566666666664
No 103
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=73.91 E-value=1.3 Score=50.01 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=26.3
Q ss_pred ccHHHHHHHHcCCCcCCccccCCCcceeEEEeC
Q 005361 666 YTLRQIKAATNNFDPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 666 f~~~el~~AT~~Fs~~~~iG~GgfG~VYkg~L~ 698 (700)
+++......+..|...++||+|+||.||||...
T Consensus 323 ~~~~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~ 355 (535)
T PRK09605 323 VTWIKEEEVKRRKIPDHLIGKGAEADIKKGEYL 355 (535)
T ss_pred eeeccccccccccCccceeccCCcEEEEEEeec
Confidence 455555666677778999999999999998764
No 104
>PTZ00036 glycogen synthase kinase; Provisional
Probab=73.66 E-value=1.3 Score=48.59 Aligned_cols=24 Identities=29% Similarity=0.696 Sum_probs=20.0
Q ss_pred HcCCCcCCccccCCCcceeEEEeC
Q 005361 675 TNNFDPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 675 T~~Fs~~~~iG~GgfG~VYkg~L~ 698 (700)
+++|....+||+||||.||+|+..
T Consensus 65 ~~~y~~~~~LG~G~fg~Vy~~~~~ 88 (440)
T PTZ00036 65 NKSYKLGNIIGNGSFGVVYEAICI 88 (440)
T ss_pred CCeEEEeEEEEeCCCEEEEEEEEC
Confidence 456767889999999999999863
No 105
>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an
Probab=73.58 E-value=1.2 Score=47.69 Aligned_cols=33 Identities=21% Similarity=0.519 Sum_probs=28.1
Q ss_pred ccHHHHHHHHcCCCcCCccccCCCcceeEEEeC
Q 005361 666 YTLRQIKAATNNFDPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 666 f~~~el~~AT~~Fs~~~~iG~GgfG~VYkg~L~ 698 (700)
-.++++..+.++|.....||+||||.||++...
T Consensus 33 ~~~~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~ 65 (371)
T cd05622 33 NKIRDLRMKAEDYEVVKVIGRGAFGEVQLVRHK 65 (371)
T ss_pred hHHhhcCcchhhcEEEEEEeecCCeEEEEEEEC
Confidence 456677778899999999999999999998753
No 106
>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti
Probab=71.65 E-value=1.7 Score=46.41 Aligned_cols=20 Identities=30% Similarity=0.627 Sum_probs=16.8
Q ss_pred CCCcCCccccCCCcceeEEE
Q 005361 677 NFDPANKVGEGGFGSVYKVN 696 (700)
Q Consensus 677 ~Fs~~~~iG~GgfG~VYkg~ 696 (700)
+|.-.++||+||||.||+++
T Consensus 39 ~~~~~~~LG~G~fg~V~~~~ 58 (374)
T cd05106 39 NLQFGKTLGAGAFGKVVEAT 58 (374)
T ss_pred HceehheecCCCcccEEEEE
Confidence 44557899999999999986
No 107
>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]
Probab=71.27 E-value=1.8 Score=44.08 Aligned_cols=16 Identities=38% Similarity=0.879 Sum_probs=14.8
Q ss_pred CCccccCCCcceeEEE
Q 005361 681 ANKVGEGGFGSVYKVN 696 (700)
Q Consensus 681 ~~~iG~GgfG~VYkg~ 696 (700)
=|+|++|.||.||||.
T Consensus 81 lnrI~EGtyGiVYRak 96 (419)
T KOG0663|consen 81 LNRIEEGTYGVVYRAK 96 (419)
T ss_pred HhhcccCcceeEEEec
Confidence 5899999999999996
No 108
>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-
Probab=70.63 E-value=2.1 Score=46.26 Aligned_cols=18 Identities=28% Similarity=0.494 Sum_probs=15.5
Q ss_pred cCCccccCCCcceeEEEe
Q 005361 680 PANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 680 ~~~~iG~GgfG~VYkg~L 697 (700)
-..+||+||||.||+|+.
T Consensus 41 ~~~~LG~G~fG~Vy~~~~ 58 (400)
T cd05105 41 LGRILGSGAFGKVVEGTA 58 (400)
T ss_pred hhheecCCCCceEEEEEE
Confidence 357899999999999974
No 109
>PHA03211 serine/threonine kinase US3; Provisional
Probab=70.62 E-value=2.1 Score=47.17 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=20.4
Q ss_pred HcCCCcCCccccCCCcceeEEEeC
Q 005361 675 TNNFDPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 675 T~~Fs~~~~iG~GgfG~VYkg~L~ 698 (700)
..+|.-..+||+|+||.||+++..
T Consensus 168 ~~gy~i~~~Lg~G~~G~Vy~a~~~ 191 (461)
T PHA03211 168 GLGFAIHRALTPGSEGCVFESSHP 191 (461)
T ss_pred cCCeEEEEEEccCCCeEEEEEEEC
Confidence 456777889999999999999864
No 110
>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found
Probab=70.61 E-value=1.5 Score=46.90 Aligned_cols=31 Identities=26% Similarity=0.581 Sum_probs=24.6
Q ss_pred HHHHHHHHcCCCcCCccccCCCcceeEEEeC
Q 005361 668 LRQIKAATNNFDPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 668 ~~el~~AT~~Fs~~~~iG~GgfG~VYkg~L~ 698 (700)
++++...+++|....+||+||||.||++.-.
T Consensus 35 ~~~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~ 65 (370)
T cd05621 35 IRKLQMKAEDYDVVKVIGRGAFGEVQLVRHK 65 (370)
T ss_pred HHhcCCCHHHCeEEEEEEecCCeEEEEEEEC
Confidence 3445556778888899999999999998753
No 111
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=70.32 E-value=1.4 Score=52.22 Aligned_cols=24 Identities=46% Similarity=0.785 Sum_probs=18.8
Q ss_pred HHHcCCCcCCccccCCCcceeEEE
Q 005361 673 AATNNFDPANKVGEGGFGSVYKVN 696 (700)
Q Consensus 673 ~AT~~Fs~~~~iG~GgfG~VYkg~ 696 (700)
+--+.|-|=.+||+||||.|||..
T Consensus 476 RY~~DFEEL~lLGkGGFG~VvkVR 499 (1351)
T KOG1035|consen 476 RYLNDFEELELLGKGGFGSVVKVR 499 (1351)
T ss_pred hHhhhhHHHHHhcCCCCceEEEEe
Confidence 444566666799999999999974
No 112
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=68.80 E-value=4.3 Score=24.62 Aligned_cols=14 Identities=43% Similarity=0.667 Sum_probs=8.5
Q ss_pred CCCCEEeccCCCCC
Q 005361 306 TKLKNIDLSFNNLT 319 (700)
Q Consensus 306 ~~L~~L~Ls~N~l~ 319 (700)
.+|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666665
No 113
>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in
Probab=67.73 E-value=1.3 Score=47.34 Aligned_cols=27 Identities=30% Similarity=0.549 Sum_probs=22.1
Q ss_pred HHHHcCCCcCCccccCCCcceeEEEeC
Q 005361 672 KAATNNFDPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 672 ~~AT~~Fs~~~~iG~GgfG~VYkg~L~ 698 (700)
...+++|....+||+|+||.||++.-.
T Consensus 39 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~ 65 (370)
T cd05596 39 RMKAEDFDVIKVIGRGAFGEVQLVRHK 65 (370)
T ss_pred CCCHHHcEEEEEEeeCCCEEEEEEEEC
Confidence 345677888899999999999998753
No 114
>PHA03209 serine/threonine kinase US3; Provisional
Probab=66.29 E-value=3.1 Score=44.12 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=21.8
Q ss_pred HHHcCCCcCCccccCCCcceeEEEeC
Q 005361 673 AATNNFDPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 673 ~AT~~Fs~~~~iG~GgfG~VYkg~L~ 698 (700)
.+..+|.....||+|+||.||+|...
T Consensus 63 ~~~~~y~~~~~lg~G~~g~Vy~~~~~ 88 (357)
T PHA03209 63 VASLGYTVIKTLTPGSEGRVFVATKP 88 (357)
T ss_pred hhhcCcEEEEEecCCCCeEEEEEEEC
Confidence 34567888899999999999999864
No 115
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=66.06 E-value=4 Score=24.69 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=10.0
Q ss_pred CCCEEEccCCcCCCCCch
Q 005361 331 KTNFMYLTGNKLTGPVPK 348 (700)
Q Consensus 331 ~L~~L~L~~N~l~~~ip~ 348 (700)
+|+.|++++|+|+ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4566666666665 4543
No 116
>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D
Probab=65.89 E-value=2.8 Score=45.31 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=16.8
Q ss_pred CCcCCccccCCCcceeEEEe
Q 005361 678 FDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 678 Fs~~~~iG~GgfG~VYkg~L 697 (700)
+.-..+||+|+||.||+|+.
T Consensus 39 ~~~~~~lG~G~fG~Vy~~~~ 58 (401)
T cd05107 39 LVLGRTLGSGAFGRVVEATA 58 (401)
T ss_pred eehhhhccCCCceeEEEEEE
Confidence 34467999999999999975
No 117
>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]
Probab=65.32 E-value=3 Score=44.16 Aligned_cols=18 Identities=39% Similarity=0.695 Sum_probs=15.2
Q ss_pred CCccccCCCcceeEEEeC
Q 005361 681 ANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 681 ~~~iG~GgfG~VYkg~L~ 698 (700)
...||+|+||+||||+..
T Consensus 46 ~~~iG~G~~g~V~~~~~~ 63 (362)
T KOG0192|consen 46 EEVLGSGSFGTVYKGKWR 63 (362)
T ss_pred hhhcccCCceeEEEEEeC
Confidence 345999999999999864
No 118
>PHA03210 serine/threonine kinase US3; Provisional
Probab=65.22 E-value=3.1 Score=46.49 Aligned_cols=23 Identities=17% Similarity=0.508 Sum_probs=19.2
Q ss_pred HcCCCcCCccccCCCcceeEEEe
Q 005361 675 TNNFDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 675 T~~Fs~~~~iG~GgfG~VYkg~L 697 (700)
.++|..-.+||+||||+||++.+
T Consensus 147 ~~~Y~ii~~LG~G~fG~Vyl~~~ 169 (501)
T PHA03210 147 LAHFRVIDDLPAGAFGKIFICAL 169 (501)
T ss_pred hhccEEEeEecCCCCcceEEEEE
Confidence 45677778999999999998764
No 119
>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]
Probab=63.38 E-value=3.3 Score=45.66 Aligned_cols=19 Identities=42% Similarity=0.597 Sum_probs=16.7
Q ss_pred CCccccCCCcceeEEEeCC
Q 005361 681 ANKVGEGGFGSVYKVNVML 699 (700)
Q Consensus 681 ~~~iG~GgfG~VYkg~L~d 699 (700)
+.+||+|-||-||+|+-.|
T Consensus 394 ~r~iG~GqFGdVy~gvYt~ 412 (974)
T KOG4257|consen 394 KRLIGEGQFGDVYKGVYTD 412 (974)
T ss_pred HHhhcCCcccceeeeEecc
Confidence 6799999999999998654
No 120
>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=63.22 E-value=3.8 Score=48.65 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=17.9
Q ss_pred CCccccCCCcceeEEEeCCC
Q 005361 681 ANKVGEGGFGSVYKVNVMLF 700 (700)
Q Consensus 681 ~~~iG~GgfG~VYkg~L~d~ 700 (700)
.+.||+|.||.||+|.+.|+
T Consensus 697 ~~~lG~G~FG~VY~g~~~~~ 716 (1025)
T KOG1095|consen 697 LRVLGKGAFGEVYEGTYSDV 716 (1025)
T ss_pred eeeeccccccceEEEEEecC
Confidence 67899999999999998764
No 121
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=60.49 E-value=24 Score=37.92 Aligned_cols=108 Identities=19% Similarity=0.157 Sum_probs=50.8
Q ss_pred cCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCcccc----cccccccEEEccCCCCCCCCchhcCC---CC
Q 005361 91 TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQ----WASLQLVELSVMGNRLSGPFPKVLTN---IT 163 (700)
Q Consensus 91 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~~l~L~~L~L~~n~l~~~~p~~~~~---l~ 163 (700)
..++++++++.|.+....|..+.+=.. -+.++.+.++...-.. -+.+.+.+++|+.|.....+|..+.. -.
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~~--pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~ 241 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPGN--PLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTL 241 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCCC--ccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhh
Confidence 345777888877765544433321100 0444444443221111 11222667777777666555554321 12
Q ss_pred CCCEEEccCCcCCC---CCCccccCCCCccEEEeeecCCC
Q 005361 164 TLKNLSIEGNLFTG---SIPPDIRKLINLQKLILSSNSFT 200 (700)
Q Consensus 164 ~L~~L~L~~n~l~~---~~p~~~~~l~~L~~L~L~~n~l~ 200 (700)
.|+.++.+...+.- .-+-.++.-++|+..+++.|..+
T Consensus 242 vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s 281 (553)
T KOG4242|consen 242 VLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTS 281 (553)
T ss_pred hhhcccccccccchhhcccccccccccccchhhhccCCCC
Confidence 35555555444331 11222333456666666666544
No 122
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=60.47 E-value=13 Score=33.35 Aligned_cols=14 Identities=36% Similarity=0.703 Sum_probs=7.3
Q ss_pred CCCceeEEEeeehH
Q 005361 614 SKKNHVMIMAAIVG 627 (700)
Q Consensus 614 ~~~~~~~~~~~~~~ 627 (700)
+.+.+.++++++||
T Consensus 44 S~knknIVIGvVVG 57 (154)
T PF04478_consen 44 SSKNKNIVIGVVVG 57 (154)
T ss_pred CcCCccEEEEEEec
Confidence 34444556665554
No 123
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=58.96 E-value=4.4 Score=42.85 Aligned_cols=18 Identities=44% Similarity=0.700 Sum_probs=15.5
Q ss_pred CCccccCCCcceeEEEeC
Q 005361 681 ANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 681 ~~~iG~GgfG~VYkg~L~ 698 (700)
-++||+|+||.||+|+..
T Consensus 79 ~~~lg~G~~g~V~~~~~~ 96 (353)
T PLN00034 79 VNRIGSGAGGTVYKVIHR 96 (353)
T ss_pred hhhccCCCCeEEEEEEEC
Confidence 468999999999999753
No 124
>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]
Probab=58.60 E-value=2.9 Score=43.74 Aligned_cols=27 Identities=44% Similarity=0.719 Sum_probs=21.6
Q ss_pred HHHHHcCCCcCCccccCCCcceeEEEe
Q 005361 671 IKAATNNFDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 671 l~~AT~~Fs~~~~iG~GgfG~VYkg~L 697 (700)
+...-+.|...++||+|.|++||++++
T Consensus 31 ~p~~~~~~~~v~kigeGsFssv~~a~~ 57 (418)
T KOG1167|consen 31 IPFISNAYKVVNKIGEGSFSSVYKATD 57 (418)
T ss_pred hhhhhhhhhhhccccccchhhhhhhhH
Confidence 344446677789999999999999875
No 125
>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]
Probab=57.86 E-value=4 Score=43.33 Aligned_cols=27 Identities=33% Similarity=0.671 Sum_probs=20.1
Q ss_pred HHHHHH-cCCCcCCccccCCCcceeEEE
Q 005361 670 QIKAAT-NNFDPANKVGEGGFGSVYKVN 696 (700)
Q Consensus 670 el~~AT-~~Fs~~~~iG~GgfG~VYkg~ 696 (700)
|.+-.| |.|..-++||+||||.||--.
T Consensus 178 E~qpvt~n~F~~~RvlGkGGFGEV~acq 205 (591)
T KOG0986|consen 178 ELQPVTKNTFRVYRVLGKGGFGEVCACQ 205 (591)
T ss_pred HhhhccccceeeeEEEecccccceeEEE
Confidence 344333 558888999999999999543
No 126
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=57.12 E-value=4.5 Score=42.54 Aligned_cols=129 Identities=16% Similarity=0.122 Sum_probs=57.9
Q ss_pred ccEEEccCCCC-CCCCchhc-CCCCCCCEEEccCCcC-CCCCCccc-cCCCCccEEEeeecCCC--CcCchhhhCCCCCc
Q 005361 141 LVELSVMGNRL-SGPFPKVL-TNITTLKNLSIEGNLF-TGSIPPDI-RKLINLQKLILSSNSFT--GELPAELTKLTNLN 214 (700)
Q Consensus 141 L~~L~L~~n~l-~~~~p~~~-~~l~~L~~L~L~~n~l-~~~~p~~~-~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~ 214 (700)
|+.|..+++.- +...-..+ .+.++|+.|-++.++- +..--..+ .+.+.|+.+++..+... +.+...-.+++.|+
T Consensus 296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr 375 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR 375 (483)
T ss_pred hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence 56666655432 21111222 2455666666666542 11000111 23456666666655432 11222223456666
Q ss_pred EEEeecCcCCCCC-----hhhhcCCCcccEEEccCCCCCC-CchhhhhcCCCCCEEEcCCC
Q 005361 215 DLRISDNNFSGKI-----PEFIGKWKKIQKLHIQGSSLEG-PIPASISALTSLTDLRISDL 269 (700)
Q Consensus 215 ~L~L~~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n 269 (700)
.|.|+.+.+.... ...-..+..|..|.|+++.... ..-+.+..+++|+.+++-++
T Consensus 376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 6666655432111 1111234456666666665431 22333455566666666554
No 127
>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=56.76 E-value=2.9 Score=44.97 Aligned_cols=15 Identities=53% Similarity=1.101 Sum_probs=13.8
Q ss_pred CccccCCCcceeEEE
Q 005361 682 NKVGEGGFGSVYKVN 696 (700)
Q Consensus 682 ~~iG~GgfG~VYkg~ 696 (700)
.+||+|-||.|||+.
T Consensus 123 ~kIGeGTyg~VYkAr 137 (560)
T KOG0600|consen 123 EKIGEGTYGQVYKAR 137 (560)
T ss_pred HHhcCcchhheeEee
Confidence 589999999999986
No 128
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=56.27 E-value=9.4 Score=23.48 Aligned_cols=14 Identities=43% Similarity=0.617 Sum_probs=8.9
Q ss_pred CCCCEEeccCCCCC
Q 005361 306 TKLKNIDLSFNNLT 319 (700)
Q Consensus 306 ~~L~~L~Ls~N~l~ 319 (700)
++|++|||++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666665
No 129
>PHA03212 serine/threonine kinase US3; Provisional
Probab=49.02 E-value=7.4 Score=41.86 Aligned_cols=22 Identities=14% Similarity=0.144 Sum_probs=17.8
Q ss_pred cCCCcCCccccCCCcceeEEEe
Q 005361 676 NNFDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 676 ~~Fs~~~~iG~GgfG~VYkg~L 697 (700)
++|.-..+||+||||.||++.-
T Consensus 92 ~~y~~~~~lg~G~~g~V~~~~d 113 (391)
T PHA03212 92 AGFSILETFTPGAEGFAFACID 113 (391)
T ss_pred CCcEEEEEEcCCCCeEEEEEEE
Confidence 3455678999999999999864
No 130
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=48.55 E-value=7 Score=46.38 Aligned_cols=29 Identities=28% Similarity=0.579 Sum_probs=22.5
Q ss_pred HHHHHHcCCCcCCccccCCCcceeEEEeC
Q 005361 670 QIKAATNNFDPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 670 el~~AT~~Fs~~~~iG~GgfG~VYkg~L~ 698 (700)
|++.--..|.-+..||+||||+||+|.=.
T Consensus 692 ~~~~~~~~~~I~~e~G~g~y~~vy~a~~~ 720 (974)
T KOG1166|consen 692 EFEVGGEKFCISKEIGEGSYGSVYVATHS 720 (974)
T ss_pred eeeecceeEEEEeeeccccceEEEEeecC
Confidence 33444566777899999999999999743
No 131
>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]
Probab=48.01 E-value=18 Score=38.54 Aligned_cols=18 Identities=28% Similarity=0.590 Sum_probs=15.4
Q ss_pred CCccccCCCcceeEEEeC
Q 005361 681 ANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 681 ~~~iG~GgfG~VYkg~L~ 698 (700)
-..||+|.||.|.||...
T Consensus 216 ~e~IGkGRyGEVwrG~wr 233 (513)
T KOG2052|consen 216 QEIIGKGRFGEVWRGRWR 233 (513)
T ss_pred EEEecCccccceeecccc
Confidence 468999999999999753
No 132
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=47.91 E-value=9.9 Score=41.54 Aligned_cols=62 Identities=23% Similarity=0.213 Sum_probs=35.2
Q ss_pred cCccEEEcccCCCCCCC--chhhcCCCCCCEEeccCC--CCCCCChhhHhc--CCCCCEEEccCCcCCCC
Q 005361 282 MNLKTLILTKCLIHGEI--PDYIGDMTKLKNIDLSFN--NLTGGIPTTFEK--LAKTNFMYLTGNKLTGP 345 (700)
Q Consensus 282 ~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~Ls~N--~l~~~~p~~~~~--l~~L~~L~L~~N~l~~~ 345 (700)
+.+..+.|++|++...- ...-...|+|+.|+|++| .+. ....+.. ...|++|-|.||.+...
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccccc
Confidence 45666667777665321 112234577888888888 333 1122222 23567888888887644
No 133
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=46.72 E-value=1.1 Score=35.30 Aligned_cols=15 Identities=20% Similarity=0.171 Sum_probs=12.9
Q ss_pred CccHHHHHHHHcCCC
Q 005361 665 LYTLRQIKAATNNFD 679 (700)
Q Consensus 665 ~f~~~el~~AT~~Fs 679 (700)
-+||+|-.+|-..|.
T Consensus 56 P~TYEDP~qAV~eFA 70 (75)
T PF14575_consen 56 PHTYEDPNQAVREFA 70 (75)
T ss_dssp GGGSSSHHHHHHHCS
T ss_pred cccccCHHHHHHHHH
Confidence 389999999999994
No 134
>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]
Probab=46.29 E-value=11 Score=40.93 Aligned_cols=24 Identities=25% Similarity=0.549 Sum_probs=19.8
Q ss_pred HHcCCCcCCccccCCCcceeEEEe
Q 005361 674 ATNNFDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 674 AT~~Fs~~~~iG~GgfG~VYkg~L 697 (700)
..++|.-=.+||+||||.||-+.-
T Consensus 139 ~~~DFe~Lk~IgkGAfGeVrLarK 162 (550)
T KOG0605|consen 139 SLDDFELLKVIGKGAFGEVRLARK 162 (550)
T ss_pred CcccchhheeeccccceeEEEEEE
Confidence 457787788999999999997653
No 135
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=43.46 E-value=14 Score=40.48 Aligned_cols=40 Identities=28% Similarity=0.061 Sum_probs=21.8
Q ss_pred cCccEEEcccC--CCCCCCchhhcCCCCCCEEeccCCCCCCC
Q 005361 282 MNLKTLILTKC--LIHGEIPDYIGDMTKLKNIDLSFNNLTGG 321 (700)
Q Consensus 282 ~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 321 (700)
++|..|+|++| .+.....-.-.....|++|-|.+|.+...
T Consensus 244 pklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 244 PKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred chhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 66777777777 33211111111224577788888877743
No 136
>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.32 E-value=7.1 Score=44.73 Aligned_cols=19 Identities=32% Similarity=0.656 Sum_probs=16.9
Q ss_pred CCccccCCCcceeEEEeCC
Q 005361 681 ANKVGEGGFGSVYKVNVML 699 (700)
Q Consensus 681 ~~~iG~GgfG~VYkg~L~d 699 (700)
...||+|.||+||+|....
T Consensus 491 ~~eLGegaFGkVf~a~~~~ 509 (774)
T KOG1026|consen 491 KEELGEGAFGKVFLAEAYG 509 (774)
T ss_pred hhhhcCchhhhhhhhhccC
Confidence 7799999999999998753
No 137
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=39.98 E-value=2.4e+02 Score=26.72 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=17.9
Q ss_pred cceEEEeeecCcceEEEEEeEEE
Q 005361 497 SLTYYGLCLGNGNYTVRLHFAEI 519 (700)
Q Consensus 497 ~lt~~~~~~~~~~y~vrlhF~ei 519 (700)
-+||.-.++...+..||+|.--+
T Consensus 40 ~ITWd~~~f~~~~~~V~I~l~y~ 62 (189)
T PF14610_consen 40 YITWDPSFFDPSNSTVRIHLSYV 62 (189)
T ss_pred EEEEChhhccCCCcEEEEEEEec
Confidence 37898888866788899987654
No 138
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=39.28 E-value=37 Score=36.89 Aligned_cols=16 Identities=19% Similarity=0.465 Sum_probs=12.2
Q ss_pred ccCCeEEEEEEeccee
Q 005361 528 NSLGKRIFDIYIQEKL 543 (700)
Q Consensus 528 ~~~~~rvF~iyI~~~~ 543 (700)
...|.-||=+|+||..
T Consensus 279 ~~sGLYv~V~~~nghv 294 (439)
T PF02480_consen 279 SASGLYVFVVYYNGHV 294 (439)
T ss_dssp GG-EEEEEEEEETTEE
T ss_pred ccCceEEEEEEECCee
Confidence 3667889999999875
No 139
>PF15102 TMEM154: TMEM154 protein family
Probab=37.02 E-value=25 Score=31.35 Aligned_cols=8 Identities=0% Similarity=0.293 Sum_probs=3.6
Q ss_pred ccHHHHHH
Q 005361 666 YTLRQIKA 673 (700)
Q Consensus 666 f~~~el~~ 673 (700)
+..+||-+
T Consensus 125 iEmeeldk 132 (146)
T PF15102_consen 125 IEMEELDK 132 (146)
T ss_pred hhHHHHHh
Confidence 34445543
No 140
>PHA03207 serine/threonine kinase US3; Provisional
Probab=36.54 E-value=16 Score=39.20 Aligned_cols=21 Identities=14% Similarity=0.333 Sum_probs=16.9
Q ss_pred CCCcCCccccCCCcceeEEEe
Q 005361 677 NFDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 677 ~Fs~~~~iG~GgfG~VYkg~L 697 (700)
.|.....||+|+||.||++.-
T Consensus 93 ~y~i~~~Lg~G~~g~Vy~~~~ 113 (392)
T PHA03207 93 QYNILSSLTPGSEGEVFVCTK 113 (392)
T ss_pred ceEEEEeecCCCCeEEEEEEE
Confidence 344567899999999999864
No 141
>PRK13617 psbV cytochrome c-550; Provisional
Probab=36.10 E-value=34 Score=31.58 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=15.7
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHH
Q 005361 1 MASLIPILKLLLASHLLFISLVTFF 25 (700)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~l~~~~~~ 25 (700)
|.+.|+|++..+...+.++++++.+
T Consensus 1 m~s~m~MLkr~~~~~~~~l~~~~~l 25 (170)
T PRK13617 1 MASLFSSLRRSLKRLLILLPVLIGL 25 (170)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888665444444444433
No 142
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=34.44 E-value=21 Score=38.97 Aligned_cols=23 Identities=9% Similarity=0.278 Sum_probs=19.0
Q ss_pred cCCCcCCccccCCCcceeEEEeCC
Q 005361 676 NNFDPANKVGEGGFGSVYKVNVML 699 (700)
Q Consensus 676 ~~Fs~~~~iG~GgfG~VYkg~L~d 699 (700)
..|+ .+.||.|++|.||||+|.|
T Consensus 118 ~~fd-~~plasaSigQVh~A~l~~ 140 (437)
T TIGR01982 118 AEFE-EKPLAAASIAQVHRARLVD 140 (437)
T ss_pred hhCC-CcceeeeehhheEEEEecC
Confidence 3465 4789999999999999865
No 143
>PHA03281 envelope glycoprotein E; Provisional
Probab=32.53 E-value=72 Score=34.84 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=17.5
Q ss_pred EEEEeEEEEecCCCccccCCeEEEEEEeccee
Q 005361 512 VRLHFAEIIFKNDSTFNSLGKRIFDIYIQEKL 543 (700)
Q Consensus 512 vrlhF~ei~~~~~~~~~~~~~rvF~iyI~~~~ 543 (700)
|.|-|.+-+. ...|.-||=+|+|+..
T Consensus 475 vdL~F~nApa------saSGLYVfVl~yNGHV 500 (642)
T PHA03281 475 SALKFVDAAE------SLSGLYVFIIHFNGHV 500 (642)
T ss_pred cceEeccCCc------ccCceEEEEEEECCee
Confidence 3455666422 3667889999999864
No 144
>TIGR01624 LRP1_Cterm LRP1 C-terminal domain. This model represents a tightly conserved small domain found in LRP1 and related plant proteins. This family also contains a well-conserved putative zinc finger domain (TIGR01623). The rest of the sequence of most members consists of highly divergent, low-complexity sequence.
Probab=32.12 E-value=28 Score=24.40 Aligned_cols=14 Identities=29% Similarity=0.377 Sum_probs=11.1
Q ss_pred CccccCCCcceeEEEeCC
Q 005361 682 NKVGEGGFGSVYKVNVML 699 (700)
Q Consensus 682 ~~iG~GgfG~VYkg~L~d 699 (700)
--|| |+|+||+|-|
T Consensus 34 V~Ig----GHvFkGiLyD 47 (50)
T TIGR01624 34 VTIG----GHVFKGFLHD 47 (50)
T ss_pred EEEC----ceEEeeEEec
Confidence 4566 8999999866
No 145
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=31.89 E-value=8 Score=40.89 Aligned_cols=32 Identities=34% Similarity=0.632 Sum_probs=22.1
Q ss_pred CccHHHHHHHHcC----CCc----------CCccccCCCcceeEEE
Q 005361 665 LYTLRQIKAATNN----FDP----------ANKVGEGGFGSVYKVN 696 (700)
Q Consensus 665 ~f~~~el~~AT~~----Fs~----------~~~iG~GgfG~VYkg~ 696 (700)
....+||++|-|. |.+ =+++|+|||..|||+.
T Consensus 438 nlHiRELKRi~NEdnSQFkDHptLn~RYLlLhLLGrGGFSEVyKAF 483 (775)
T KOG1151|consen 438 NLHIRELKRIHNEDNSQFKDHPTLNDRYLLLHLLGRGGFSEVYKAF 483 (775)
T ss_pred HHHHHHHHhhcccchhhhccCcchHHHHHHHHHhccccHHHHHHhc
Confidence 3556777776553 322 1479999999999975
No 146
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=30.26 E-value=60 Score=26.99 Aligned_cols=7 Identities=43% Similarity=0.387 Sum_probs=2.7
Q ss_pred EEEeeeh
Q 005361 620 MIMAAIV 626 (700)
Q Consensus 620 ~~~~~~~ 626 (700)
.|+++++
T Consensus 70 gi~vg~~ 76 (96)
T PTZ00382 70 GISVAVV 76 (96)
T ss_pred EEEeehh
Confidence 3444333
No 147
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=28.05 E-value=23 Score=38.58 Aligned_cols=18 Identities=39% Similarity=0.787 Sum_probs=15.4
Q ss_pred CCcCCccccCCCcceeEEE
Q 005361 678 FDPANKVGEGGFGSVYKVN 696 (700)
Q Consensus 678 Fs~~~~iG~GgfG~VYkg~ 696 (700)
|+ +..+|.|-||+||-|+
T Consensus 567 f~-devLGSGQFG~VYgg~ 584 (888)
T KOG4236|consen 567 FA-DEVLGSGQFGTVYGGK 584 (888)
T ss_pred hh-HhhccCCcceeeecce
Confidence 44 5799999999999886
No 148
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=26.87 E-value=31 Score=34.61 Aligned_cols=13 Identities=38% Similarity=0.570 Sum_probs=5.3
Q ss_pred eEEEeeehHHHHH
Q 005361 619 VMIMAAIVGASVL 631 (700)
Q Consensus 619 ~~~~~~~~~~~~~ 631 (700)
+.+++++++++++
T Consensus 213 W~iv~g~~~G~~~ 225 (278)
T PF06697_consen 213 WKIVVGVVGGVVL 225 (278)
T ss_pred EEEEEEehHHHHH
Confidence 3344443444333
No 149
>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]
Probab=26.66 E-value=27 Score=38.91 Aligned_cols=16 Identities=38% Similarity=0.700 Sum_probs=14.5
Q ss_pred CCccccCCCcceeEEE
Q 005361 681 ANKVGEGGFGSVYKVN 696 (700)
Q Consensus 681 ~~~iG~GgfG~VYkg~ 696 (700)
+.+||+|.|-+||||.
T Consensus 45 ~evLGrGafKtVYka~ 60 (632)
T KOG0584|consen 45 DEVLGRGAFKTVYKAF 60 (632)
T ss_pred hhhcccccceeeeecc
Confidence 4589999999999996
No 150
>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]
Probab=26.15 E-value=20 Score=35.60 Aligned_cols=25 Identities=28% Similarity=0.608 Sum_probs=18.7
Q ss_pred CccHHHHHHHHcCCCcCCccccCCCcceeEEE
Q 005361 665 LYTLRQIKAATNNFDPANKVGEGGFGSVYKVN 696 (700)
Q Consensus 665 ~f~~~el~~AT~~Fs~~~~iG~GgfG~VYkg~ 696 (700)
.|+-+.|+. --.||.|.||+|+|-.
T Consensus 60 ~F~~~~Lqd-------lg~iG~G~fG~V~KM~ 84 (361)
T KOG1006|consen 60 TFTSDNLQD-------LGEIGNGAFGTVNKML 84 (361)
T ss_pred ccccchHHH-------HHHhcCCcchhhhhhh
Confidence 366666654 4579999999999854
No 151
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=24.69 E-value=33 Score=38.66 Aligned_cols=22 Identities=27% Similarity=0.594 Sum_probs=17.9
Q ss_pred cCCCcCCccccCCCcceeEEEe
Q 005361 676 NNFDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 676 ~~Fs~~~~iG~GgfG~VYkg~L 697 (700)
++|---.+||+|.||+|+.+.+
T Consensus 368 ~~F~~l~vLGkGsFGkV~lae~ 389 (694)
T KOG0694|consen 368 DDFRLLAVLGRGSFGKVLLAEL 389 (694)
T ss_pred cceEEEEEeccCcCceEEEEEE
Confidence 4555578999999999998765
No 152
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=22.06 E-value=41 Score=37.27 Aligned_cols=19 Identities=11% Similarity=0.177 Sum_probs=15.9
Q ss_pred CCcCCccccCCCcceeEEE
Q 005361 678 FDPANKVGEGGFGSVYKVN 696 (700)
Q Consensus 678 Fs~~~~iG~GgfG~VYkg~ 696 (700)
|--..+||+||||.||++.
T Consensus 69 y~~~~~lg~G~~g~vy~a~ 87 (478)
T PTZ00267 69 YVLTTLVGRNPTTAAFVAT 87 (478)
T ss_pred EEEEEEEEeCCCcEEEEEE
Confidence 3346799999999999986
No 153
>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]
Probab=22.01 E-value=42 Score=36.44 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=16.6
Q ss_pred CCccccCCCcceeEEEeCC
Q 005361 681 ANKVGEGGFGSVYKVNVML 699 (700)
Q Consensus 681 ~~~iG~GgfG~VYkg~L~d 699 (700)
-+.||+|-||.|+.|.+..
T Consensus 211 ~~~LG~G~FG~V~~g~~~~ 229 (468)
T KOG0197|consen 211 IRELGSGQFGEVWLGKWNG 229 (468)
T ss_pred HHHhcCCccceEEEEEEcC
Confidence 5789999999999998753
No 154
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=21.44 E-value=39 Score=38.30 Aligned_cols=18 Identities=28% Similarity=0.680 Sum_probs=15.9
Q ss_pred CcCCccccCCCcceeEEE
Q 005361 679 DPANKVGEGGFGSVYKVN 696 (700)
Q Consensus 679 s~~~~iG~GgfG~VYkg~ 696 (700)
.++-++|+|-||+||-|.
T Consensus 578 ~ervVLGKGTYG~VYA~R 595 (1226)
T KOG4279|consen 578 NERVVLGKGTYGTVYAAR 595 (1226)
T ss_pred CceEEeecCceeEEEeec
Confidence 457899999999999886
No 155
>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]
Probab=20.38 E-value=70 Score=33.32 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=21.6
Q ss_pred CccHHHHHHHHcCCCcCCccccCCCcceeEEEe
Q 005361 665 LYTLRQIKAATNNFDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 665 ~f~~~el~~AT~~Fs~~~~iG~GgfG~VYkg~L 697 (700)
.++..||+. -+.||+|..|+|||...
T Consensus 75 ~i~~~dle~-------~~~lG~G~gG~V~kv~H 100 (364)
T KOG0581|consen 75 GISLSDLER-------LGVLGSGNGGTVYKVRH 100 (364)
T ss_pred ccCHHHhhh-------hhhcccCCCcEEEEEEE
Confidence 477788875 57999999999999864
No 156
>PHA03283 envelope glycoprotein E; Provisional
Probab=20.23 E-value=4e+02 Score=29.34 Aligned_cols=27 Identities=19% Similarity=0.189 Sum_probs=17.8
Q ss_pred EEEEeEEEEecCCCccccCCeEEEEEEecceec
Q 005361 512 VRLHFAEIIFKNDSTFNSLGKRIFDIYIQEKLV 544 (700)
Q Consensus 512 vrlhF~ei~~~~~~~~~~~~~rvF~iyI~~~~~ 544 (700)
|.|-|.+.+ -...|..||=+|+|+...
T Consensus 315 v~L~f~nap------~~~SGLYVfVv~yNgHve 341 (542)
T PHA03283 315 VDLLFKNAP------ASASGLYVFVLLYNGHPE 341 (542)
T ss_pred cceEeccCC------cccCceEEEEEEECCeee
Confidence 445555542 236778899999998753
Done!