Query 005361
Match_columns 700
No_of_seqs 748 out of 6548
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 23:10:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005361.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005361hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 7.1E-38 2.4E-42 326.1 20.5 295 35-367 2-307 (313)
2 4eco_A Uncharacterized protein 100.0 5E-36 1.7E-40 342.4 20.4 348 37-395 28-503 (636)
3 4ecn_A Leucine-rich repeat pro 100.0 4.5E-35 1.5E-39 340.4 23.6 345 35-395 265-743 (876)
4 3rgz_A Protein brassinosteroid 100.0 9.4E-35 3.2E-39 339.5 18.7 311 37-370 10-361 (768)
5 3rgz_A Protein brassinosteroid 100.0 7.1E-34 2.4E-38 332.0 21.5 278 94-371 370-723 (768)
6 3v47_A TOLL-like receptor 5B a 100.0 1.7E-33 6E-38 309.3 20.3 289 91-388 29-424 (455)
7 2id5_A Lingo-1, leucine rich r 100.0 4.8E-33 1.7E-37 307.6 21.2 288 90-385 30-345 (477)
8 4g8a_A TOLL-like receptor 4; l 100.0 7E-33 2.4E-37 317.4 22.6 312 90-414 50-616 (635)
9 3vq2_A TLR4, TOLL-like recepto 100.0 1.8E-31 6E-36 304.3 24.0 132 91-222 31-164 (606)
10 3t6q_A CD180 antigen; protein- 100.0 3.9E-32 1.3E-36 309.7 17.4 307 93-414 255-596 (606)
11 1ziw_A TOLL-like receptor 3; i 100.0 1.4E-30 4.7E-35 301.1 24.8 313 92-416 329-662 (680)
12 4eco_A Uncharacterized protein 100.0 1.9E-31 6.7E-36 304.4 15.0 280 104-394 195-527 (636)
13 3j0a_A TOLL-like receptor 5; m 100.0 1.3E-30 4.4E-35 307.7 19.3 227 183-413 286-596 (844)
14 2z7x_B TOLL-like receptor 1, v 100.0 7E-30 2.4E-34 285.5 22.6 181 211-410 324-512 (520)
15 3o6n_A APL1; leucine-rich repe 100.0 5E-30 1.7E-34 275.7 20.3 269 92-365 45-352 (390)
16 3oja_B Anopheles plasmodium-re 100.0 1.8E-29 6E-34 286.6 23.3 269 92-365 51-358 (597)
17 4fcg_A Uncharacterized protein 100.0 7.8E-30 2.7E-34 267.0 16.6 270 31-343 19-314 (328)
18 3zyj_A Leucine-rich repeat-con 100.0 3.3E-29 1.1E-33 273.7 21.5 288 95-425 46-344 (440)
19 2z80_A TOLL-like receptor 2, v 100.0 1.1E-29 3.7E-34 269.2 16.9 283 92-410 52-345 (353)
20 3t6q_A CD180 antigen; protein- 100.0 4.9E-29 1.7E-33 284.1 23.0 178 90-268 31-211 (606)
21 3zyi_A Leucine-rich repeat-con 100.0 1.9E-29 6.4E-34 276.7 18.7 276 96-414 58-338 (452)
22 2id5_A Lingo-1, leucine rich r 100.0 1.1E-28 3.8E-33 272.6 23.2 293 96-395 15-311 (477)
23 2z63_A TOLL-like receptor 4, v 100.0 4.8E-29 1.6E-33 282.0 20.7 101 282-390 445-549 (570)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.1E-29 2.4E-33 279.9 20.5 147 232-388 350-526 (562)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.6E-28 5.3E-33 277.1 23.0 137 91-233 51-193 (562)
26 4ecn_A Leucine-rich repeat pro 100.0 2.6E-28 8.9E-33 283.7 25.0 274 91-372 490-825 (876)
27 2z81_A CD282 antigen, TOLL-lik 100.0 2.1E-28 7.3E-33 275.3 23.5 297 91-394 25-424 (549)
28 3v47_A TOLL-like receptor 5B a 100.0 7.4E-29 2.5E-33 272.3 17.3 257 92-348 54-413 (455)
29 1ogq_A PGIP-2, polygalacturona 100.0 8.2E-29 2.8E-33 257.6 16.1 230 141-371 52-287 (313)
30 3j0a_A TOLL-like receptor 5; m 100.0 3.3E-28 1.1E-32 287.0 23.2 282 91-372 23-358 (844)
31 1ziw_A TOLL-like receptor 3; i 100.0 1.3E-27 4.3E-32 276.2 26.8 282 91-372 24-349 (680)
32 1xku_A Decorin; proteoglycan, 100.0 1.1E-27 3.6E-32 251.4 23.4 263 93-365 32-306 (330)
33 2z7x_B TOLL-like receptor 1, v 100.0 5.3E-28 1.8E-32 270.2 21.0 274 91-372 20-419 (520)
34 1xku_A Decorin; proteoglycan, 100.0 2.5E-27 8.5E-32 248.6 24.2 266 91-363 51-330 (330)
35 2z66_A Variable lymphocyte rec 100.0 1.1E-28 3.7E-33 256.1 13.0 278 96-413 11-296 (306)
36 2ft3_A Biglycan; proteoglycan, 100.0 8.8E-28 3E-32 252.3 18.9 262 93-365 34-307 (332)
37 2ft3_A Biglycan; proteoglycan, 99.9 3.1E-27 1.1E-31 248.1 20.5 265 91-363 53-331 (332)
38 2z81_A CD282 antigen, TOLL-lik 99.9 2.1E-27 7.1E-32 267.3 20.1 159 91-249 49-210 (549)
39 4fmz_A Internalin; leucine ric 99.9 4.5E-26 1.6E-30 240.8 27.0 260 91-369 65-328 (347)
40 3o6n_A APL1; leucine-rich repe 99.9 1.2E-26 4.1E-31 249.3 21.4 258 92-355 69-364 (390)
41 1ozn_A Reticulon 4 receptor; N 99.9 7.2E-27 2.5E-31 239.7 18.6 223 95-343 14-238 (285)
42 4fmz_A Internalin; leucine ric 99.9 1.3E-25 4.6E-30 237.1 28.6 281 92-396 44-327 (347)
43 2z66_A Variable lymphocyte rec 99.9 3E-27 1E-31 245.2 14.1 265 81-369 10-291 (306)
44 3oja_B Anopheles plasmodium-re 99.9 2.5E-26 8.5E-31 260.6 21.7 246 114-365 49-314 (597)
45 3vq2_A TLR4, TOLL-like recepto 99.9 5.2E-26 1.8E-30 259.0 23.0 154 96-252 15-170 (606)
46 1o6v_A Internalin A; bacterial 99.9 2.8E-25 9.7E-30 244.4 28.1 256 91-367 67-324 (466)
47 4fcg_A Uncharacterized protein 99.9 1.2E-25 4.3E-30 235.0 21.8 223 114-364 79-313 (328)
48 1o6v_A Internalin A; bacterial 99.9 6.6E-25 2.3E-29 241.5 28.5 278 92-396 46-325 (466)
49 3zyj_A Leucine-rich repeat-con 99.9 5.8E-26 2E-30 248.0 19.6 230 90-344 62-293 (440)
50 1ozn_A Reticulon 4 receptor; N 99.9 5.2E-26 1.8E-30 233.3 16.4 237 90-350 30-268 (285)
51 3bz5_A Internalin-J, INLJ; leu 99.9 2.5E-25 8.6E-30 243.2 22.7 255 91-370 41-304 (457)
52 2z80_A TOLL-like receptor 2, v 99.9 3.2E-26 1.1E-30 242.5 14.7 264 100-393 39-314 (353)
53 1wwl_A Monocyte differentiatio 99.9 2.9E-27 1E-31 245.9 5.3 246 113-366 40-310 (312)
54 3zyi_A Leucine-rich repeat-con 99.9 4.3E-25 1.5E-29 242.0 21.2 227 119-372 57-286 (452)
55 1wwl_A Monocyte differentiatio 99.9 7.1E-27 2.4E-31 243.0 5.3 243 92-344 43-310 (312)
56 4g8a_A TOLL-like receptor 4; l 99.9 7.1E-25 2.4E-29 250.9 22.4 147 100-249 39-187 (635)
57 3o53_A Protein LRIM1, AGAP0063 99.9 1.2E-26 4.3E-31 241.7 6.5 263 93-369 11-280 (317)
58 1p9a_G Platelet glycoprotein I 99.9 1E-24 3.6E-29 223.8 17.6 214 161-389 8-224 (290)
59 3bz5_A Internalin-J, INLJ; leu 99.9 4.7E-24 1.6E-28 233.2 21.6 272 91-394 63-353 (457)
60 2z63_A TOLL-like receptor 4, v 99.9 2.2E-24 7.5E-29 243.7 19.2 277 90-370 26-343 (570)
61 3oja_A Leucine-rich immune mol 99.9 2E-25 6.7E-30 246.2 9.5 239 108-360 22-270 (487)
62 2z62_A TOLL-like receptor 4, v 99.9 6.4E-24 2.2E-28 216.6 17.5 208 116-343 28-237 (276)
63 2o6q_A Variable lymphocyte rec 99.9 1.8E-23 6.2E-28 212.5 20.3 213 81-345 8-220 (270)
64 2o6q_A Variable lymphocyte rec 99.9 3E-23 1E-27 210.9 21.3 213 141-388 18-234 (270)
65 2z62_A TOLL-like receptor 4, v 99.9 2.4E-23 8.2E-28 212.4 18.1 209 91-323 27-241 (276)
66 3o53_A Protein LRIM1, AGAP0063 99.9 4.1E-25 1.4E-29 230.2 4.4 244 91-348 33-281 (317)
67 1jl5_A Outer protein YOPM; leu 99.9 8.9E-23 3.1E-27 222.8 22.4 245 93-372 132-379 (454)
68 3rfs_A Internalin B, repeat mo 99.9 2.7E-23 9.2E-28 211.4 15.8 202 162-372 40-242 (272)
69 1jl5_A Outer protein YOPM; leu 99.9 3.2E-22 1.1E-26 218.4 23.8 265 92-394 91-371 (454)
70 3oja_A Leucine-rich immune mol 99.9 4.5E-24 1.5E-28 235.4 8.7 234 91-338 33-270 (487)
71 3g06_A SSPH2 (leucine-rich rep 99.9 6.3E-23 2.2E-27 231.0 16.2 240 93-369 41-301 (622)
72 1p9a_G Platelet glycoprotein I 99.9 6.8E-22 2.3E-26 202.8 19.3 204 112-344 6-209 (290)
73 1z7x_W Ribonuclease inhibitor; 99.9 1.2E-24 4.2E-29 239.1 -1.4 275 93-367 86-413 (461)
74 3rfs_A Internalin B, repeat mo 99.9 2.5E-22 8.6E-27 204.3 15.9 206 112-351 37-243 (272)
75 3m19_A Variable lymphocyte rec 99.9 1.1E-21 3.9E-26 196.9 17.8 158 164-344 36-193 (251)
76 2ast_B S-phase kinase-associat 99.9 8.6E-23 2.9E-27 214.5 9.5 252 93-373 48-314 (336)
77 2jwp_A Malectin, MGC80075; sug 99.9 1.1E-22 3.7E-27 190.5 8.8 159 414-605 6-170 (174)
78 4glp_A Monocyte differentiatio 99.9 1.7E-21 5.7E-26 202.2 15.8 198 141-365 93-307 (310)
79 3goz_A Leucine-rich repeat-con 99.9 4.1E-23 1.4E-27 219.3 3.2 257 96-352 2-306 (362)
80 1z7x_W Ribonuclease inhibitor; 99.9 2.2E-23 7.6E-28 229.0 0.4 203 141-343 87-326 (461)
81 2xwt_C Thyrotropin receptor; s 99.9 2.3E-21 8E-26 193.1 15.0 195 117-340 32-236 (239)
82 3g06_A SSPH2 (leucine-rich rep 99.9 1.4E-20 4.8E-25 211.8 22.7 227 92-351 61-305 (622)
83 2ca6_A RAN GTPase-activating p 99.9 1.3E-22 4.4E-27 217.6 4.3 241 107-347 23-320 (386)
84 4glp_A Monocyte differentiatio 99.9 1.1E-21 3.8E-26 203.5 11.0 228 135-393 60-307 (310)
85 2xwt_C Thyrotropin receptor; s 99.9 2.4E-21 8.3E-26 193.0 12.7 196 140-362 32-236 (239)
86 2ca6_A RAN GTPase-activating p 99.8 1E-22 3.4E-27 218.4 2.1 237 132-368 24-319 (386)
87 1h6u_A Internalin H; cell adhe 99.8 2.2E-20 7.6E-25 193.3 18.7 194 112-344 37-231 (308)
88 3m19_A Variable lymphocyte rec 99.8 1.8E-20 6.3E-25 188.1 16.3 182 81-270 8-190 (251)
89 3goz_A Leucine-rich repeat-con 99.8 7.2E-22 2.5E-26 209.7 5.7 248 120-367 2-299 (362)
90 1h6u_A Internalin H; cell adhe 99.8 8E-20 2.7E-24 189.2 19.6 189 141-366 43-231 (308)
91 3cvr_A Invasion plasmid antige 99.8 8.5E-20 2.9E-24 203.0 15.1 216 117-384 60-291 (571)
92 2ast_B S-phase kinase-associat 99.8 3.7E-21 1.3E-25 202.0 3.5 234 92-351 70-314 (336)
93 2v9t_B SLIT homolog 2 protein 99.8 7.8E-20 2.7E-24 179.4 12.2 165 188-413 33-197 (220)
94 4ay9_X Follicle-stimulating ho 99.8 2E-19 6.8E-24 189.8 14.1 237 96-362 13-256 (350)
95 2o6s_A Variable lymphocyte rec 99.8 4.2E-19 1.4E-23 172.7 14.8 157 164-350 29-185 (208)
96 2v70_A SLIT-2, SLIT homolog 2 99.8 2E-19 7E-24 176.4 11.9 182 167-412 15-197 (220)
97 2o6s_A Variable lymphocyte rec 99.8 1E-18 3.5E-23 169.9 15.3 163 115-307 27-190 (208)
98 4ay9_X Follicle-stimulating ho 99.8 5.3E-19 1.8E-23 186.6 14.3 222 120-369 13-240 (350)
99 3cvr_A Invasion plasmid antige 99.8 1.3E-18 4.5E-23 193.4 15.2 203 81-331 51-255 (571)
100 2xot_A Amphoterin-induced prot 99.8 5.7E-19 1.9E-23 187.1 11.7 84 165-248 41-125 (361)
101 1h6t_A Internalin B; cell adhe 99.7 1.3E-17 4.6E-22 170.9 16.0 169 161-343 44-213 (291)
102 3e6j_A Variable lymphocyte rec 99.7 1.6E-17 5.5E-22 163.9 15.3 133 187-343 40-172 (229)
103 1m9s_A Internalin B; cell inva 99.7 8.2E-18 2.8E-22 189.1 14.3 170 161-344 41-211 (605)
104 1m9s_A Internalin B; cell inva 99.7 1.7E-17 6E-22 186.4 16.5 147 113-271 40-187 (605)
105 3e6j_A Variable lymphocyte rec 99.7 3.6E-17 1.2E-21 161.5 16.3 136 116-252 40-176 (229)
106 2v70_A SLIT-2, SLIT homolog 2 99.7 2E-17 6.7E-22 162.2 12.9 155 95-252 14-170 (220)
107 3ogk_B Coronatine-insensitive 99.7 1.6E-18 5.4E-23 196.6 5.7 273 93-367 193-528 (592)
108 1h6t_A Internalin B; cell adhe 99.7 2.7E-17 9.3E-22 168.6 14.2 171 113-320 43-214 (291)
109 2v9t_B SLIT homolog 2 protein 99.7 3.3E-17 1.1E-21 160.6 14.1 152 95-249 14-166 (220)
110 4b8c_D Glucose-repressible alc 99.7 7.9E-19 2.7E-23 202.3 2.7 262 34-343 127-404 (727)
111 3ogk_B Coronatine-insensitive 99.7 1.2E-18 4.1E-23 197.6 2.8 173 93-267 139-326 (592)
112 2xot_A Amphoterin-induced prot 99.7 3.4E-17 1.2E-21 173.4 13.3 171 95-268 21-198 (361)
113 4ezg_A Putative uncharacterize 99.7 2.2E-16 7.5E-21 152.0 13.8 154 160-343 41-194 (197)
114 4ezg_A Putative uncharacterize 99.7 3.1E-16 1.1E-20 150.9 12.3 150 113-270 41-192 (197)
115 1w8a_A SLIT protein; signaling 99.7 1.3E-16 4.4E-21 152.8 8.2 52 292-343 88-139 (192)
116 2wfh_A SLIT homolog 2 protein 99.6 3.5E-16 1.2E-20 149.8 10.2 113 284-413 56-171 (193)
117 1xeu_A Internalin C; cellular 99.6 1.5E-16 5.2E-21 160.4 7.7 165 141-343 21-185 (263)
118 1dce_A Protein (RAB geranylger 99.6 8.9E-19 3E-23 195.8 -9.5 108 212-347 442-550 (567)
119 1xeu_A Internalin C; cellular 99.6 4.2E-16 1.4E-20 157.2 9.9 170 114-321 17-187 (263)
120 2p1m_B Transport inhibitor res 99.6 1.3E-16 4.4E-21 180.9 4.3 102 92-193 130-241 (594)
121 2p1m_B Transport inhibitor res 99.6 1.4E-16 4.8E-21 180.6 2.3 127 92-219 105-243 (594)
122 1dce_A Protein (RAB geranylger 99.6 1.5E-17 5.3E-22 185.7 -5.7 188 160-370 346-551 (567)
123 1w8a_A SLIT protein; signaling 99.6 4.9E-15 1.7E-19 141.8 11.6 129 95-226 11-141 (192)
124 4b8c_D Glucose-repressible alc 99.6 5.1E-16 1.8E-20 178.9 4.3 188 107-319 215-404 (727)
125 2ell_A Acidic leucine-rich nuc 99.6 6E-15 2E-19 137.9 10.8 131 116-248 24-160 (168)
126 2ell_A Acidic leucine-rich nuc 99.6 1.2E-14 4.1E-19 135.9 11.1 130 141-272 26-160 (168)
127 3sb4_A Hypothetical leucine ri 99.6 1.5E-15 5E-20 158.7 5.0 250 92-351 25-317 (329)
128 2je0_A Acidic leucine-rich nuc 99.5 9.8E-15 3.4E-19 133.5 9.6 125 141-267 19-148 (149)
129 2je0_A Acidic leucine-rich nuc 99.5 7.2E-15 2.5E-19 134.4 7.5 126 116-243 17-148 (149)
130 2o6r_A Variable lymphocyte rec 99.5 8.9E-14 3.1E-18 131.1 13.9 131 94-227 9-140 (177)
131 2wfh_A SLIT homolog 2 protein 99.5 7.9E-14 2.7E-18 133.4 13.2 128 119-249 13-140 (193)
132 2o6r_A Variable lymphocyte rec 99.5 8.9E-14 3.1E-18 131.1 12.6 134 117-252 8-141 (177)
133 4fdw_A Leucine rich hypothetic 99.5 5.4E-13 1.9E-17 142.4 16.0 222 111-343 131-358 (401)
134 3sb4_A Hypothetical leucine ri 99.4 1.6E-13 5.5E-18 143.2 9.8 236 92-337 49-328 (329)
135 1a9n_A U2A', U2A'; complex (nu 99.4 1.2E-13 4.1E-18 130.1 7.6 131 112-247 15-152 (176)
136 4fdw_A Leucine rich hypothetic 99.4 1.2E-12 4E-17 139.9 15.0 241 92-343 135-383 (401)
137 3g39_A Variable lymphocyte rec 99.4 3.8E-13 1.3E-17 125.8 9.9 100 284-391 32-134 (170)
138 1ds9_A Outer arm dynein; leuci 99.4 4E-15 1.4E-19 143.2 -6.4 148 113-265 15-180 (198)
139 1a9n_A U2A', U2A'; complex (nu 99.4 6.1E-13 2.1E-17 125.2 8.7 125 141-270 21-151 (176)
140 1ds9_A Outer arm dynein; leuci 99.4 6E-15 2.1E-19 142.0 -6.8 155 159-343 14-185 (198)
141 3g39_A Variable lymphocyte rec 99.3 4.1E-12 1.4E-16 118.7 11.7 104 119-224 12-115 (170)
142 2r9u_A Variable lymphocyte rec 99.3 8.5E-12 2.9E-16 117.0 11.7 104 119-224 15-118 (174)
143 2ifg_A High affinity nerve gro 99.3 5.3E-12 1.8E-16 132.6 10.5 113 282-409 31-146 (347)
144 2r9u_A Variable lymphocyte rec 99.3 2.2E-11 7.5E-16 114.1 12.1 104 95-201 15-119 (174)
145 3un9_A NLR family member X1; l 99.1 2E-12 6.9E-17 136.7 -3.4 12 141-152 74-85 (372)
146 3un9_A NLR family member X1; l 99.1 6.2E-12 2.1E-16 132.9 -0.5 160 162-344 71-253 (372)
147 2ifg_A High affinity nerve gro 99.1 2E-10 6.7E-15 120.6 9.8 103 144-249 13-117 (347)
148 4fs7_A Uncharacterized protein 98.9 6.4E-09 2.2E-13 111.0 13.3 259 93-362 72-376 (394)
149 2ra8_A Uncharacterized protein 98.9 1.7E-09 5.7E-14 113.3 6.3 82 282-363 252-341 (362)
150 4gt6_A Cell surface protein; l 98.8 3.8E-08 1.3E-12 105.0 13.3 260 94-364 66-369 (394)
151 2ra8_A Uncharacterized protein 98.7 4E-09 1.4E-13 110.4 4.5 208 91-317 106-341 (362)
152 4fs7_A Uncharacterized protein 98.6 1.6E-07 5.6E-12 100.0 12.7 220 109-340 155-376 (394)
153 4gt6_A Cell surface protein; l 98.6 4.7E-07 1.6E-11 96.5 15.0 245 108-362 55-344 (394)
154 4h09_A Hypothetical leucine ri 98.4 2.2E-06 7.4E-11 90.7 15.0 258 93-362 47-343 (379)
155 3rfe_A Platelet glycoprotein I 98.3 8.8E-07 3E-11 77.9 6.2 71 331-416 32-105 (130)
156 1io0_A Tropomodulin; LRR prote 98.2 4.9E-07 1.7E-11 85.2 3.0 115 206-343 31-164 (185)
157 1io0_A Tropomodulin; LRR prote 98.1 7.8E-07 2.7E-11 83.8 2.1 63 186-248 64-136 (185)
158 3rw6_A Nuclear RNA export fact 98.1 3.3E-07 1.1E-11 90.9 -1.0 41 161-201 168-210 (267)
159 4h09_A Hypothetical leucine ri 98.0 4.9E-05 1.7E-09 80.2 14.7 248 92-351 69-352 (379)
160 3rw6_A Nuclear RNA export fact 98.0 6.5E-06 2.2E-10 81.6 6.1 63 283-347 171-237 (267)
161 3e4g_A ATP synthase subunit S, 97.7 5.6E-05 1.9E-09 69.4 6.3 82 188-269 62-149 (176)
162 3e4g_A ATP synthase subunit S, 97.6 4.1E-05 1.4E-09 70.4 3.9 86 137-222 59-150 (176)
163 1pgv_A TMD-1, tropomodulin TMD 96.6 0.0011 3.9E-08 61.9 3.4 61 282-342 98-169 (197)
164 1pgv_A TMD-1, tropomodulin TMD 96.2 0.0023 8E-08 59.8 3.4 38 282-319 126-170 (197)
165 3rfe_A Platelet glycoprotein I 95.8 0.019 6.4E-07 49.9 6.9 56 286-343 12-68 (130)
166 2qkw_B Protein kinase; three-h 93.5 0.0082 2.8E-07 61.3 -1.6 34 665-698 28-61 (321)
167 3omv_A RAF proto-oncogene seri 92.2 0.041 1.4E-06 55.6 1.4 18 681-698 41-58 (307)
168 3p1a_A MYT1 kinase, membrane-a 91.0 0.0096 3.3E-07 60.5 -4.8 23 676-698 57-79 (311)
169 4aoj_A High affinity nerve gro 90.8 0.045 1.6E-06 55.9 0.0 19 680-698 45-63 (329)
170 4aw2_A Serine/threonine-protei 89.9 0.04 1.4E-06 58.9 -1.3 33 666-698 64-96 (437)
171 3kul_A Ephrin type-A receptor 87.6 0.16 5.3E-06 51.7 1.3 33 665-697 29-70 (325)
172 4ase_A Vascular endothelial gr 84.8 0.17 5.8E-06 52.1 -0.2 21 677-697 65-85 (353)
173 2vd5_A DMPK protein; serine/th 84.6 0.13 4.6E-06 54.3 -1.1 34 665-698 50-83 (412)
174 4g3f_A NF-kappa-beta-inducing 82.9 0.18 6.2E-06 51.5 -0.9 22 676-697 58-79 (336)
175 3v8s_A RHO-associated protein 82.1 0.2 6.9E-06 52.8 -1.0 33 666-698 59-91 (410)
176 4fih_A Serine/threonine-protei 80.7 0.35 1.2E-05 49.5 0.2 20 678-697 76-95 (346)
177 2qol_A Ephrin receptor; recept 78.8 0.49 1.7E-05 49.1 0.6 23 676-698 45-67 (373)
178 3dzo_A Rhoptry kinase domain; 78.7 0.29 9.9E-06 51.7 -1.2 23 675-697 77-99 (413)
179 4fie_A Serine/threonine-protei 77.2 0.51 1.8E-05 49.7 0.2 21 677-697 152-172 (423)
180 3lb7_A RAF proto-oncogene seri 77.1 0.72 2.5E-05 46.2 1.3 22 677-698 37-58 (307)
181 4b99_A Mitogen-activated prote 76.8 0.53 1.8E-05 49.3 0.2 19 678-696 56-74 (398)
182 3e7e_A HBUB1, BUB1A, mitotic c 76.1 0.43 1.5E-05 49.3 -0.8 22 675-696 64-85 (365)
183 3l9p_A Anaplastic lymphoma kin 74.1 0.76 2.6E-05 47.5 0.5 22 677-698 72-93 (367)
184 2w4o_A Calcium/calmodulin-depe 72.7 0.76 2.6E-05 47.1 0.1 24 675-698 52-75 (349)
185 3v5w_A G-protein coupled recep 72.2 0.7 2.4E-05 51.6 -0.3 22 676-697 189-210 (689)
186 1mqb_A Ephrin type-A receptor 71.9 0.86 3E-05 46.2 0.3 18 680-697 48-65 (333)
187 3p86_A Serine/threonine-protei 71.8 0.81 2.8E-05 45.9 0.0 22 676-697 37-58 (309)
188 3c1x_A Hepatocyte growth facto 70.7 1.3 4.3E-05 45.9 1.2 17 681-697 94-110 (373)
189 2y7j_A Phosphorylase B kinase 70.0 1.2 4E-05 46.0 0.8 32 667-698 85-116 (365)
190 3i6u_A CDS1, serine/threonine- 69.7 1.3 4.6E-05 46.5 1.2 25 673-697 132-156 (419)
191 1qcf_A Haematopoetic cell kina 69.6 0.99 3.4E-05 48.2 0.1 23 676-698 188-210 (454)
192 2psq_A Fibroblast growth facto 69.4 0.99 3.4E-05 46.7 0.1 22 676-697 81-102 (370)
193 2vx3_A Dual specificity tyrosi 69.3 0.86 2.9E-05 47.3 -0.4 28 670-697 48-75 (382)
194 2i1m_A Macrophage colony-stimu 68.5 1 3.5E-05 45.6 -0.1 23 675-697 45-67 (333)
195 1luf_A Muscle-specific tyrosin 68.4 1.1 3.9E-05 45.3 0.3 25 674-698 45-69 (343)
196 4dc2_A Protein kinase C IOTA t 67.9 1.1 3.7E-05 46.9 0.0 23 676-698 52-74 (396)
197 1vzo_A Ribosomal protein S6 ki 67.3 1 3.6E-05 46.1 -0.3 22 676-697 54-75 (355)
198 3a99_A Proto-oncogene serine/t 67.2 1.3 4.4E-05 44.6 0.4 22 676-697 43-64 (320)
199 1u5q_A Serine/threonine protei 67.0 0.96 3.3E-05 46.3 -0.6 22 676-697 54-75 (348)
200 2c30_A Serine/threonine-protei 66.9 1.1 3.9E-05 45.1 -0.1 21 678-698 47-67 (321)
201 3an0_A Dual specificity mitoge 66.3 1.2 4.1E-05 45.2 -0.0 22 676-697 51-72 (340)
202 1j1b_A Glycogen synthase kinas 66.2 1.3 4.4E-05 46.7 0.1 20 679-698 57-76 (420)
203 2zmd_A Dual specificity protei 66.1 1.2 4E-05 46.5 -0.2 21 678-698 58-78 (390)
204 1fmk_A C-SRC, P60-SRC, tyrosin 65.8 1.4 4.6E-05 47.0 0.3 22 677-698 185-206 (452)
205 3mdy_A Bone morphogenetic prot 65.8 1.3 4.3E-05 44.8 -0.0 29 670-698 31-59 (337)
206 1opk_A P150, C-ABL, proto-onco 64.8 1.4 4.6E-05 47.7 0.0 22 677-698 221-242 (495)
207 3tt0_A Basic fibroblast growth 64.2 1.3 4.4E-05 46.0 -0.3 21 677-697 70-90 (382)
208 4fl3_A Tyrosine-protein kinase 64.0 1.6 5.6E-05 48.7 0.5 16 682-697 375-390 (635)
209 2r5t_A Serine/threonine-protei 63.8 1.6 5.6E-05 45.1 0.4 23 676-698 38-60 (373)
210 3rp9_A Mitogen-activated prote 63.8 1.9 6.4E-05 46.0 0.9 22 676-697 53-74 (458)
211 3nsz_A CK II alpha, casein kin 63.5 1.3 4.6E-05 44.5 -0.3 22 676-697 36-57 (330)
212 2v62_A Serine/threonine-protei 63.3 1.4 4.7E-05 44.9 -0.3 21 678-698 39-59 (345)
213 1rjb_A FL cytokine receptor; k 63.3 1.4 4.7E-05 44.8 -0.3 22 676-697 45-66 (344)
214 3cbl_A C-FES, proto-oncogene t 63.0 1.4 4.9E-05 45.5 -0.2 21 678-698 116-136 (377)
215 3kvw_A DYRK2, dual specificity 62.9 1.5 5.2E-05 46.3 -0.0 21 677-697 98-118 (429)
216 4e7w_A Glycogen synthase kinas 62.8 1.4 4.6E-05 46.0 -0.5 19 680-698 44-62 (394)
217 2x4f_A Myosin light chain kina 62.4 1.6 5.6E-05 45.0 0.1 17 681-697 94-110 (373)
218 1k9a_A Carboxyl-terminal SRC k 62.3 1.6 5.6E-05 46.4 0.0 22 677-698 194-215 (450)
219 3byv_A Rhoptry kinase; malaria 61.9 1.2 4E-05 46.2 -1.2 22 676-697 73-94 (377)
220 4exu_A Mitogen-activated prote 61.5 1.7 5.7E-05 44.9 -0.0 21 677-697 43-63 (371)
221 2h8h_A Proto-oncogene tyrosine 61.0 1.8 6E-05 47.3 0.0 21 678-698 269-289 (535)
222 1wak_A Serine/threonine-protei 60.6 1.8 6E-05 44.9 -0.0 22 676-697 37-58 (397)
223 1b6c_B TGF-B superfamily recep 60.6 1.9 6.5E-05 43.6 0.2 27 672-698 38-64 (342)
224 4ejn_A RAC-alpha serine/threon 60.5 1.5 5.3E-05 46.5 -0.5 22 676-697 148-169 (446)
225 3uto_A Twitchin; kinase, muscl 60.5 1.7 5.8E-05 47.9 -0.2 22 676-697 157-178 (573)
226 1kob_A Twitchin; kinase, intra 60.4 1.7 5.8E-05 45.2 -0.2 22 676-697 51-72 (387)
227 3q60_A ROP5B; pseudokinase, tr 60.2 2.3 7.9E-05 43.7 0.8 20 678-697 64-83 (371)
228 1rdq_E PKA C-alpha, CAMP-depen 60.0 1.8 6.2E-05 44.2 -0.1 22 676-697 41-62 (350)
229 3c4z_A Rhodopsin kinase; Ser/T 59.5 2.1 7.1E-05 46.8 0.3 23 676-698 185-207 (543)
230 3pfq_A PKC-B, PKC-beta, protei 59.1 2.5 8.4E-05 47.6 0.8 24 675-698 340-363 (674)
231 2jii_A Serine/threonine-protei 59.0 1.8 6.1E-05 44.2 -0.4 22 677-698 43-64 (352)
232 2owb_A Serine/threonine-protei 58.9 1.7 6E-05 43.9 -0.5 19 680-698 45-63 (335)
233 1zar_A RIO2 kinase; serine kin 58.7 2.7 9.1E-05 41.5 0.9 18 680-697 94-111 (282)
234 3en9_A Glycoprotease, O-sialog 58.6 3.1 0.00011 45.4 1.5 20 679-698 339-358 (540)
235 1zth_A RIO1 serine protein kin 58.5 2.9 0.0001 40.5 1.1 32 666-697 34-68 (258)
236 2ozo_A Tyrosine-protein kinase 58.1 3.2 0.00011 46.1 1.5 15 683-697 343-357 (613)
237 2acx_A G protein-coupled recep 57.8 2 6.9E-05 47.2 -0.2 24 675-698 183-206 (576)
238 3ttj_A Mitogen-activated prote 56.7 2.4 8.3E-05 45.3 0.2 21 676-696 62-82 (464)
239 3q5i_A Protein kinase; CDPK, m 55.2 2.5 8.4E-05 45.7 -0.1 22 676-697 36-57 (504)
240 2j0j_A Focal adhesion kinase 1 54.6 2.9 0.0001 46.9 0.4 22 676-697 390-411 (656)
241 2vzp_A Aocbm35, EXO-beta-D-glu 53.7 47 0.0016 27.7 8.0 46 496-550 39-84 (127)
242 1nxk_A MAP kinase-activated pr 53.5 3.6 0.00012 42.8 0.9 16 682-697 68-83 (400)
243 3lij_A Calcium/calmodulin depe 50.7 4.1 0.00014 43.8 0.8 20 678-697 39-58 (494)
244 2w47_A Lipolytic enzyme, G-D-S 49.5 55 0.0019 28.1 7.9 46 496-550 40-85 (144)
245 2w1i_A JAK2; chromosomal rearr 48.8 3.4 0.00012 41.5 -0.2 17 681-697 46-62 (326)
246 4gyi_A RIO2 kinase; protein ki 46.8 6.3 0.00022 40.8 1.4 18 681-698 100-117 (397)
247 2pzi_A Probable serine/threoni 46.6 3.8 0.00013 46.1 -0.3 22 676-697 80-101 (681)
248 2wz8_A Cellulosome protein doc 39.7 1.2E+02 0.0043 26.3 8.6 82 496-579 47-130 (156)
249 2lz0_A Uncharacterized protein 39.4 54 0.0018 26.2 5.7 45 151-196 8-52 (100)
250 2w87_A Esterase D, XYL-CBM35; 35.0 1.3E+02 0.0044 25.5 7.9 40 496-544 39-78 (139)
251 2w3j_A Carbohydrate binding mo 32.6 50 0.0017 28.5 4.8 40 496-544 39-78 (145)
252 2lz0_A Uncharacterized protein 29.0 59 0.002 26.0 4.3 45 175-220 8-52 (100)
253 2l6w_A Beta-type platelet-deri 20.9 31 0.0011 22.1 0.0 7 638-644 28-34 (39)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=7.1e-38 Score=326.11 Aligned_cols=295 Identities=25% Similarity=0.429 Sum_probs=254.6
Q ss_pred CCCHHHHHHHHHHHHhcCC----CCCCCCCCCCCCCCCCcccCCCCCCCCCCeeeCCCCCcCcEEEEEecCCCCCC--cC
Q 005361 35 KLHAEEVKALKQIGRKLGK----KDWNFGVDPCSQKGNWELSSDDKKGFESNVTCDCSSATCHVVTIALKAQNLTG--TL 108 (700)
Q Consensus 35 ~~~~~e~~al~~l~~~~~~----~~w~~~~d~C~~~~~w~~~~~~~~~~~~~v~C~~~~~~~~v~~L~L~~~~l~~--~~ 108 (700)
.|.++|++||.+|++.++. .+|..+.++|. +.| .||+|+.....++|+.|+|+++.+++ .+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~~~~~C~--~~w-----------~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~ 68 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCN--RTW-----------LGVLCDTDTQTYRVNNLDLSGLNLPKPYPI 68 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTT--TCS-----------TTEEECCSSSCCCEEEEEEECCCCSSCEEC
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCCCCCCCCCc--CCC-----------cceEeCCCCCCceEEEEECCCCCccCCccc
Confidence 5889999999999999965 47987788883 248 89999864334799999999999999 89
Q ss_pred chhhcCCCCCCEEECcC-CCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCC
Q 005361 109 PTELSKLRYLKQLDLSR-NCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKL 186 (700)
Q Consensus 109 ~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 186 (700)
|..|.++++|++|+|++ |.+.+.+|..+..++ |++|++++|.+++.+|..|.++++|++|+|++|.+.+.+|..+..+
T Consensus 69 ~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 148 (313)
T 1ogq_A 69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148 (313)
T ss_dssp CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC
Confidence 99999999999999995 999999999999888 9999999999998899999999999999999999998899999999
Q ss_pred CCccEEEeeecCCCCcCchhhhCCC-CCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEE
Q 005361 187 INLQKLILSSNSFTGELPAELTKLT-NLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLR 265 (700)
Q Consensus 187 ~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 265 (700)
++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+..++ |+.|++++|.+++..|..+..+++|+.|+
T Consensus 149 ~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 227 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIH 227 (313)
T ss_dssp TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEE
T ss_pred CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEE
Confidence 9999999999999988999999998 899999999999888888888887 99999999998888888787777766666
Q ss_pred cCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCC
Q 005361 266 ISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGP 345 (700)
Q Consensus 266 l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 345 (700)
+++ |.+++.+|. +..+++|++|+|++|++++.+|..+..+++|+.|+|++|+++|.
T Consensus 228 L~~-----------------------N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 283 (313)
T 1ogq_A 228 LAK-----------------------NSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283 (313)
T ss_dssp CCS-----------------------SEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred CCC-----------------------CceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc
Confidence 555 555555554 67788899999999999888898899999999999999999988
Q ss_pred Cchhh-hcCCCeeeeecCc-cccc
Q 005361 346 VPKYI-FNSNKNVDISLNN-FTWE 367 (700)
Q Consensus 346 ip~~~-~~~l~~L~ls~N~-l~~~ 367 (700)
+|..- +++++.+++++|+ +.|.
T Consensus 284 ip~~~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 284 IPQGGNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp CCCSTTGGGSCGGGTCSSSEEEST
T ss_pred CCCCccccccChHHhcCCCCccCC
Confidence 88752 4578889999997 5553
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5e-36 Score=342.42 Aligned_cols=348 Identities=21% Similarity=0.292 Sum_probs=281.3
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcccCC-CCCCCCCCeeeCCCCCcCcEEEEEecCCCCCCcCchhhcCC
Q 005361 37 HAEEVKALKQIGRKLGKKDWNFGVDPCSQKGNWELSSD-DKKGFESNVTCDCSSATCHVVTIALKAQNLTGTLPTELSKL 115 (700)
Q Consensus 37 ~~~e~~al~~l~~~~~~~~w~~~~d~C~~~~~w~~~~~-~~~~~~~~v~C~~~~~~~~v~~L~L~~~~l~~~~~~~l~~l 115 (700)
...|++||.++++++++..|....+.|.....|....+ +..+...||+|+.. +||+.|+|+++++.|.+|++|++|
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~---~~V~~L~L~~~~l~g~lp~~l~~L 104 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN---GRVTGLSLEGFGASGRVPDAIGQL 104 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT---CCEEEEECTTSCCEEEECGGGGGC
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC---CCEEEEEecCcccCCcCChHHhcC
Confidence 44699999999999988889876666655557864322 22222389999853 799999999999999999999999
Q ss_pred CCCCEEECcCCCC-------------------------------------------------------------------
Q 005361 116 RYLKQLDLSRNCL------------------------------------------------------------------- 128 (700)
Q Consensus 116 ~~L~~L~L~~n~l------------------------------------------------------------------- 128 (700)
++|++|+|++|.+
T Consensus 105 ~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~ 184 (636)
T 4eco_A 105 TELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK 184 (636)
T ss_dssp TTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCC
T ss_pred ccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchh
Confidence 9999999998843
Q ss_pred -----------CCCccccccccc-ccEEEccCCCCCCC-----------------CchhcC--CCCCCCEEEccCCcCCC
Q 005361 129 -----------TGSFSPQWASLQ-LVELSVMGNRLSGP-----------------FPKVLT--NITTLKNLSIEGNLFTG 177 (700)
Q Consensus 129 -----------~~~~~~~~~~l~-L~~L~L~~n~l~~~-----------------~p~~~~--~l~~L~~L~L~~n~l~~ 177 (700)
++ +|..+..++ |++|+|++|.+++. +|..++ ++++|++|+|++|.+.+
T Consensus 185 ~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~ 263 (636)
T 4eco_A 185 DTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT 263 (636)
T ss_dssp TTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS
T ss_pred hhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc
Confidence 34 677788888 99999999999985 899988 99999999999999999
Q ss_pred CCCccccCCCCccEEEeeecC-CCC-cCchhhhCC------CCCcEEEeecCcCCCCChh--hhcCCCcccEEEccCCCC
Q 005361 178 SIPPDIRKLINLQKLILSSNS-FTG-ELPAELTKL------TNLNDLRISDNNFSGKIPE--FIGKWKKIQKLHIQGSSL 247 (700)
Q Consensus 178 ~~p~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l 247 (700)
.+|..|+++++|++|++++|. +++ .+|..+..+ ++|++|++++|.++ .+|. .++.+++|+.|++++|.+
T Consensus 264 ~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l 342 (636)
T 4eco_A 264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQL 342 (636)
T ss_dssp SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCC
T ss_pred cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcC
Confidence 999999999999999999998 888 788888876 99999999999999 7887 899999999999999999
Q ss_pred CCCchhhhhcCCCCCEEEcCCCCCCCCcccc-cCc-cC-ccEEEcccCCCCCCCchhhcCCC--CCCEEeccCCCCCCCC
Q 005361 248 EGPIPASISALTSLTDLRISDLKGSESAFPK-LDK-MN-LKTLILTKCLIHGEIPDYIGDMT--KLKNIDLSFNNLTGGI 322 (700)
Q Consensus 248 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-l~~-~~-L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~ 322 (700)
.|.+| .+..+++|+.|++++|.+. .+|. +.. ++ |+.|+|++|.++ .+|..+..++ +|+.|+|++|++++.+
T Consensus 343 ~g~ip-~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~ 418 (636)
T 4eco_A 343 EGKLP-AFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVD 418 (636)
T ss_dssp EEECC-CCEEEEEESEEECCSSEEE--ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTT
T ss_pred ccchh-hhCCCCCCCEEECCCCccc--cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcc
Confidence 98888 8889999999999998776 3333 444 67 999999999998 7777776654 8999999999999888
Q ss_pred hhhHh-------cCCCCCEEEccCCcCCCCCchhhh---cCCCeeeeecCcccccCCCCC-CCC---CCCccceecccCC
Q 005361 323 PTTFE-------KLAKTNFMYLTGNKLTGPVPKYIF---NSNKNVDISLNNFTWESSDPI-ECP---RGSVNLVESYSSP 388 (700)
Q Consensus 323 p~~~~-------~l~~L~~L~L~~N~l~~~ip~~~~---~~l~~L~ls~N~l~~~~p~~~-~C~---~~~~~~~~~~~~~ 388 (700)
|..+. .+++|+.|+|++|+++ .+|..++ ++++.|+|++|.++ .+|..+ ... +....-++.+...
T Consensus 419 p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls 496 (636)
T 4eco_A 419 GKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLR 496 (636)
T ss_dssp TCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECC
T ss_pred hhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECc
Confidence 88887 7789999999999998 6777654 47889999999988 666544 111 1112245566666
Q ss_pred CCCCCCc
Q 005361 389 RNKLDKV 395 (700)
Q Consensus 389 ~~~~~~~ 395 (700)
.|.+..+
T Consensus 497 ~N~l~~l 503 (636)
T 4eco_A 497 FNKLTKL 503 (636)
T ss_dssp SSCCCBC
T ss_pred CCcCCcc
Confidence 6666543
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.5e-35 Score=340.43 Aligned_cols=345 Identities=19% Similarity=0.267 Sum_probs=275.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCCC-----CC--CCCCCCCcccCC-CCCCCCCCeeeCCCCCcCcEEEEEecCCCCCC
Q 005361 35 KLHAEEVKALKQIGRKLGKKDWNFGV-----DP--CSQKGNWELSSD-DKKGFESNVTCDCSSATCHVVTIALKAQNLTG 106 (700)
Q Consensus 35 ~~~~~e~~al~~l~~~~~~~~w~~~~-----d~--C~~~~~w~~~~~-~~~~~~~~v~C~~~~~~~~v~~L~L~~~~l~~ 106 (700)
....+|++||++|+++++..+|..+. +| | .|..... +..+...||+|++ .++|+.|+|+++++.|
T Consensus 265 ~~~~~d~~ALl~~k~~l~~~~W~~~~~~~~~~~~~C----~W~~~~~~~~w~~~~GV~C~~---~~~V~~L~Ls~~~L~G 337 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSL----NWNFNKELDMWGDQPGVDLDN---NGRVTGLSLAGFGAKG 337 (876)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCCSSCSSCCCCC----SCCCSSCGGGTTCCTTEEECT---TSCEEEEECTTTCCEE
T ss_pred ccchHHHHHHHHHHHHcCCCCCCcCCCcccccCCcc----ccccccccccccCcCceEecC---CCCEEEEECccCCCCC
Confidence 34667999999999999877897654 66 6 6744322 3445558999986 4799999999999999
Q ss_pred cCchhhcCCCCCCEEEC-cCCCCCCC------------------------------------------------------
Q 005361 107 TLPTELSKLRYLKQLDL-SRNCLTGS------------------------------------------------------ 131 (700)
Q Consensus 107 ~~~~~l~~l~~L~~L~L-~~n~l~~~------------------------------------------------------ 131 (700)
.+|+.|++|++|++|+| ++|.+.|.
T Consensus 338 ~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i 417 (876)
T 4ecn_A 338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPI 417 (876)
T ss_dssp EECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCC
T ss_pred cCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccc
Confidence 99999999999999999 77754332
Q ss_pred ----------------------ccccccccc-ccEEEccCCCCCC-----------------CCchhcC--CCCCCCEEE
Q 005361 132 ----------------------FSPQWASLQ-LVELSVMGNRLSG-----------------PFPKVLT--NITTLKNLS 169 (700)
Q Consensus 132 ----------------------~~~~~~~l~-L~~L~L~~n~l~~-----------------~~p~~~~--~l~~L~~L~ 169 (700)
+|..+..++ |++|+|++|.+++ .+|..++ ++++|++|+
T Consensus 418 ~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~ 497 (876)
T 4ecn_A 418 KKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497 (876)
T ss_dssp CCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred ccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEE
Confidence 677788888 9999999999997 3888877 999999999
Q ss_pred ccCCcCCCCCCccccCCCCccEEEeeecC-CCC-cCchhhhCCC-------CCcEEEeecCcCCCCChh--hhcCCCccc
Q 005361 170 IEGNLFTGSIPPDIRKLINLQKLILSSNS-FTG-ELPAELTKLT-------NLNDLRISDNNFSGKIPE--FIGKWKKIQ 238 (700)
Q Consensus 170 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~--~l~~l~~L~ 238 (700)
|++|.+.+.+|..|+++++|+.|+|++|. +++ .+|..+..++ +|++|+|++|.++ .+|. .+..+++|+
T Consensus 498 Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~ 576 (876)
T 4ecn_A 498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLG 576 (876)
T ss_dssp EESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCC
T ss_pred CcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCC
Confidence 99999999999999999999999999998 887 7887766555 9999999999998 7787 899999999
Q ss_pred EEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCccc-ccCc-cC-ccEEEcccCCCCCCCchhhcCCCC--CCEEec
Q 005361 239 KLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFP-KLDK-MN-LKTLILTKCLIHGEIPDYIGDMTK--LKNIDL 313 (700)
Q Consensus 239 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~l~~-~~-L~~L~L~~n~l~~~~p~~~~~l~~--L~~L~L 313 (700)
.|+|++|.+. .+| .+..+++|+.|++++|.+. .+| .+.. ++ |+.|+|++|.++ .+|..+..++. |+.|+|
T Consensus 577 ~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~L 651 (876)
T 4ecn_A 577 LLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDF 651 (876)
T ss_dssp EEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEEC
T ss_pred EEECCCCCcc-cch-hhcCCCcceEEECcCCccc--cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEEC
Confidence 9999999998 777 8889999999999998877 344 3554 67 999999999998 77777766654 999999
Q ss_pred cCCCCCCCChhhH---h--cCCCCCEEEccCCcCCCCCchhhh---cCCCeeeeecCcccccCCCCCCCC-----CCCcc
Q 005361 314 SFNNLTGGIPTTF---E--KLAKTNFMYLTGNKLTGPVPKYIF---NSNKNVDISLNNFTWESSDPIECP-----RGSVN 380 (700)
Q Consensus 314 s~N~l~~~~p~~~---~--~l~~L~~L~L~~N~l~~~ip~~~~---~~l~~L~ls~N~l~~~~p~~~~C~-----~~~~~ 380 (700)
++|++++.+|... . .+++|+.|+|++|+++ .+|..++ ++++.|+|++|.++ .+|..+ +. |....
T Consensus 652 s~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~-~~~~~~~l~nl~ 728 (876)
T 4ecn_A 652 SYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENS-LKPKDGNYKNTY 728 (876)
T ss_dssp CSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTS-SSCTTSCCTTGG
T ss_pred cCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHH-hccccccccccC
Confidence 9999987665322 2 3458999999999998 7787765 57889999999888 666544 22 22233
Q ss_pred ceecccCCCCCCCCc
Q 005361 381 LVESYSSPRNKLDKV 395 (700)
Q Consensus 381 ~~~~~~~~~~~~~~~ 395 (700)
-++.+....|.+..+
T Consensus 729 ~L~~L~Ls~N~L~~l 743 (876)
T 4ecn_A 729 LLTTIDLRFNKLTSL 743 (876)
T ss_dssp GCCEEECCSSCCCCC
T ss_pred CccEEECCCCCCccc
Confidence 556666666666543
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=9.4e-35 Score=339.46 Aligned_cols=311 Identities=29% Similarity=0.425 Sum_probs=197.3
Q ss_pred CHHHHHHHHHHHHhcCC----CCCCCCCCCCCCCCCCcccCCCCCCCCCCeeeCCCCCcCcEEEEEecCCCCCCc---Cc
Q 005361 37 HAEEVKALKQIGRKLGK----KDWNFGVDPCSQKGNWELSSDDKKGFESNVTCDCSSATCHVVTIALKAQNLTGT---LP 109 (700)
Q Consensus 37 ~~~e~~al~~l~~~~~~----~~w~~~~d~C~~~~~w~~~~~~~~~~~~~v~C~~~~~~~~v~~L~L~~~~l~~~---~~ 109 (700)
.++|++||++||+.+.. .+|..+.|+| .| .||+|+ .++|+.|+|+++.+.|. ++
T Consensus 10 ~~~~~~all~~k~~~~~~~~l~~W~~~~~~C----~w-----------~gv~C~----~~~v~~L~L~~~~l~g~~~~l~ 70 (768)
T 3rgz_A 10 LYREIHQLISFKDVLPDKNLLPDWSSNKNPC----TF-----------DGVTCR----DDKVTSIDLSSKPLNVGFSAVS 70 (768)
T ss_dssp HHHHHHHHHHHHTTCSCTTSSTTCCTTSCGG----GS-----------TTEEEE----TTEEEEEECTTSCCCEEHHHHH
T ss_pred CHHHHHHHHHHHhhCCCcccccCCCCCCCCc----CC-----------cceEEC----CCcEEEEECCCCCcCCccCccC
Confidence 67899999999998853 5798778888 78 899997 47999999999999886 55
Q ss_pred h-----------------------hhcCCCCCCEEECcCCCCCCCccc--cccccc-ccEEEccCCCCCCCCchhc-CCC
Q 005361 110 T-----------------------ELSKLRYLKQLDLSRNCLTGSFSP--QWASLQ-LVELSVMGNRLSGPFPKVL-TNI 162 (700)
Q Consensus 110 ~-----------------------~l~~l~~L~~L~L~~n~l~~~~~~--~~~~l~-L~~L~L~~n~l~~~~p~~~-~~l 162 (700)
+ .|.++++|++|+|++|.+.+.+|. .+..++ |++|+|++|.+.+..|..+ .++
T Consensus 71 ~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 150 (768)
T 3rgz_A 71 SSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL 150 (768)
T ss_dssp HHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCC
T ss_pred hhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccC
Confidence 4 455556666666666666655555 555555 6666666666655555544 556
Q ss_pred CCCCEEEccCCcCCCCCCcc---ccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccE
Q 005361 163 TTLKNLSIEGNLFTGSIPPD---IRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQK 239 (700)
Q Consensus 163 ~~L~~L~L~~n~l~~~~p~~---~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 239 (700)
++|++|+|++|.+++..|.. +.++++|++|++++|.+++..+. ..+++|++|++++|.+++.+|. ++.+++|++
T Consensus 151 ~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~ 227 (768)
T 3rgz_A 151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQH 227 (768)
T ss_dssp TTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCE
T ss_pred CCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCE
Confidence 66666666666665554444 45555566666665555544332 5677777777777777776666 778888888
Q ss_pred EEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCC-CCCCEEeccCCCC
Q 005361 240 LHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDM-TKLKNIDLSFNNL 318 (700)
Q Consensus 240 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~Ls~N~l 318 (700)
|+|++|.+++.+|..+..+++|+.|++++|.+.. ..|....++|++|+|++|.+++.+|..+... ++|++|+|++|++
T Consensus 228 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l 306 (768)
T 3rgz_A 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVG-PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306 (768)
T ss_dssp EECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEE-SCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEE
T ss_pred EECcCCcCCCcccHHHhcCCCCCEEECCCCcccC-ccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcC
Confidence 8888888887888888888888888888766542 2222222455555555555555555444332 5555555555555
Q ss_pred CCCChhhHhcCCCCCEEEccCCcCCCCCchhh---hcCCCeeeeecCcccccCCC
Q 005361 319 TGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYI---FNSNKNVDISLNNFTWESSD 370 (700)
Q Consensus 319 ~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~---~~~l~~L~ls~N~l~~~~p~ 370 (700)
++.+|..|..+++|+.|+|++|+++|.+|... +++++.|++++|.+++.+|.
T Consensus 307 ~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~ 361 (768)
T 3rgz_A 307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361 (768)
T ss_dssp EECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCT
T ss_pred CCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccH
Confidence 55555555555555555555555554444431 12344444444444444443
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.1e-34 Score=332.05 Aligned_cols=278 Identities=30% Similarity=0.499 Sum_probs=214.9
Q ss_pred EEEEEecCCCCCCcCchhhcC--CCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEc
Q 005361 94 VVTIALKAQNLTGTLPTELSK--LRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSI 170 (700)
Q Consensus 94 v~~L~L~~~~l~~~~~~~l~~--l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 170 (700)
++.|++++|.+++.+|..+.. +++|++|+|++|.+++.+|..+..++ |++|++++|.+++.+|..+.++++|++|+|
T Consensus 370 L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 449 (768)
T 3rgz_A 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449 (768)
T ss_dssp CSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred CcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEEC
Confidence 444444444444444444433 55666666666666666677777776 888888888877777777888888888888
Q ss_pred cCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCC
Q 005361 171 EGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGP 250 (700)
Q Consensus 171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 250 (700)
++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+++|++|+|++|++++.+|..++.+++|++|+|++|.+.+.
T Consensus 450 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 529 (768)
T 3rgz_A 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEE
T ss_pred CCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCc
Confidence 88888877787888888888888888888877788888888888888888888877888888888888888888888877
Q ss_pred chhhhhcCCCCCEEEcCCCCCCCCcc------------------------------------------------------
Q 005361 251 IPASISALTSLTDLRISDLKGSESAF------------------------------------------------------ 276 (700)
Q Consensus 251 ~~~~~~~l~~L~~L~l~~n~~~~~~~------------------------------------------------------ 276 (700)
+|..+..+++|+.|++++|.+.....
T Consensus 530 ~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 609 (768)
T 3rgz_A 530 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGG
T ss_pred CCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccc
Confidence 88888888888888887765431100
Q ss_pred ----------------cccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccC
Q 005361 277 ----------------PKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTG 339 (700)
Q Consensus 277 ----------------~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 339 (700)
+.+.. .+|+.|+|++|++++.+|..++.+++|+.|+|++|+++|.+|..+..+++|+.|||++
T Consensus 610 ~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~ 689 (768)
T 3rgz_A 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689 (768)
T ss_dssp TCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred ccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCC
Confidence 01222 5788999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCchhhh--cCCCeeeeecCcccccCCCC
Q 005361 340 NKLTGPVPKYIF--NSNKNVDISLNNFTWESSDP 371 (700)
Q Consensus 340 N~l~~~ip~~~~--~~l~~L~ls~N~l~~~~p~~ 371 (700)
|+++|.+|..+. ..++.||+++|+++|.+|..
T Consensus 690 N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 690 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp SCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred CcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 999999998775 47889999999999999865
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.7e-33 Score=309.26 Aligned_cols=289 Identities=18% Similarity=0.248 Sum_probs=217.9
Q ss_pred cCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCc-cccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEE
Q 005361 91 TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSF-SPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNL 168 (700)
Q Consensus 91 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L 168 (700)
+.+++.|+|++|.+++..|..|.++++|++|+|++|.+.+.+ +..|..++ |++|+|++|.+++..|..|.++++|++|
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 468999999999999988999999999999999999987554 56788888 9999999999998889999999999999
Q ss_pred EccCCcCCCCCCcc--ccCCCCccEEEeeecCCCCcCchh-hhCCCCCcEEEeecCcCCCCChhhhcCC-----------
Q 005361 169 SIEGNLFTGSIPPD--IRKLINLQKLILSSNSFTGELPAE-LTKLTNLNDLRISDNNFSGKIPEFIGKW----------- 234 (700)
Q Consensus 169 ~L~~n~l~~~~p~~--~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l----------- 234 (700)
+|++|.+++..+.. |..+++|++|+|++|.+++..|.. +..+++|++|++++|.+++..+..+..+
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence 99999998755544 888999999999999999877765 7889999999999999887666554432
Q ss_pred -----------------------CcccEEEccCCCCCC------------------------------------------
Q 005361 235 -----------------------KKIQKLHIQGSSLEG------------------------------------------ 249 (700)
Q Consensus 235 -----------------------~~L~~L~L~~n~l~~------------------------------------------ 249 (700)
++|+.|++++|.+.+
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 268 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence 456666666665543
Q ss_pred ---------------------CchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCC
Q 005361 250 ---------------------PIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTK 307 (700)
Q Consensus 250 ---------------------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~ 307 (700)
..|..+..+++|+.|++++|.+.......+.. ++|+.|+|++|.+++..|..+..+++
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 348 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence 34455666667777777766665544444544 67777777777777666777777777
Q ss_pred CCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhh---hcCCCeeeeecCcccccCCCCCCCCCCCc-ccee
Q 005361 308 LKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYI---FNSNKNVDISLNNFTWESSDPIECPRGSV-NLVE 383 (700)
Q Consensus 308 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~---~~~l~~L~ls~N~l~~~~p~~~~C~~~~~-~~~~ 383 (700)
|++|+|++|++++..|..|..+++|+.|+|++|++++ +|... +++++.|++++|+++ |+|... ++..
T Consensus 349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~--------~~~~~~~~l~~ 419 (455)
T 3v47_A 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWD--------CSCPRIDYLSR 419 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBC--------CCTTTTHHHHH
T ss_pred CCEEECCCCcccccChhhccccccccEEECCCCcccc-CCHhHhccCCcccEEEccCCCcc--------cCCCcchHHHH
Confidence 7777777777776667777777777777777777774 44332 246677777777554 777643 4456
Q ss_pred cccCC
Q 005361 384 SYSSP 388 (700)
Q Consensus 384 ~~~~~ 388 (700)
|+...
T Consensus 420 ~l~~~ 424 (455)
T 3v47_A 420 WLNKN 424 (455)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 76544
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.8e-33 Score=307.62 Aligned_cols=288 Identities=18% Similarity=0.194 Sum_probs=228.4
Q ss_pred CcCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEE
Q 005361 90 ATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNL 168 (700)
Q Consensus 90 ~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L 168 (700)
.+.+++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..|..++ |++|+|++|.++...+..|.++++|++|
T Consensus 30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEE
T ss_pred CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEE
Confidence 345789999999999988888999999999999999999988888999888 9999999999997777778999999999
Q ss_pred EccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCC
Q 005361 169 SIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLE 248 (700)
Q Consensus 169 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 248 (700)
+|++|.+.+..+..|..+++|+.|++++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|+.|+|++|.+.
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence 99999999888888999999999999999998888888999999999999999998877778888999999999998888
Q ss_pred CCchhhhhcCCCCCEEEcCCCCCCC------------------------CcccccCc-cCccEEEcccCCCCCCCchhhc
Q 005361 249 GPIPASISALTSLTDLRISDLKGSE------------------------SAFPKLDK-MNLKTLILTKCLIHGEIPDYIG 303 (700)
Q Consensus 249 ~~~~~~~~~l~~L~~L~l~~n~~~~------------------------~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~ 303 (700)
+..+..|..+++|+.|++++|.... .+...+.. ++|+.|+|++|.+++..+..|.
T Consensus 190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (477)
T 2id5_A 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH 269 (477)
T ss_dssp EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCT
T ss_pred EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcc
Confidence 7666677777777777776654322 21112333 5677777777777666666666
Q ss_pred CCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhh--hcCCCeeeeecCcccccCCCCCCCCCCCccc
Q 005361 304 DMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYI--FNSNKNVDISLNNFTWESSDPIECPRGSVNL 381 (700)
Q Consensus 304 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~--~~~l~~L~ls~N~l~~~~p~~~~C~~~~~~~ 381 (700)
.+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..+ +++++.|+|++|++ .|+|...|+
T Consensus 270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l--------~c~c~~~~~ 341 (477)
T 2id5_A 270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL--------ACDCRLLWV 341 (477)
T ss_dssp TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE--------ECSGGGHHH
T ss_pred ccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc--------cCccchHhH
Confidence 77777777777777776667777777777777777777774333322 24677778877754 499988877
Q ss_pred eecc
Q 005361 382 VESY 385 (700)
Q Consensus 382 ~~~~ 385 (700)
..|.
T Consensus 342 ~~~~ 345 (477)
T 2id5_A 342 FRRR 345 (477)
T ss_dssp HTTT
T ss_pred Hhhh
Confidence 7654
No 8
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=7e-33 Score=317.43 Aligned_cols=312 Identities=19% Similarity=0.234 Sum_probs=241.2
Q ss_pred CcCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEE
Q 005361 90 ATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNL 168 (700)
Q Consensus 90 ~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L 168 (700)
.+..++.|+|++|.|++..+.+|.++++|++|+|++|.++++.+.+|..++ |++|+|++|++++..+..|.++++|++|
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence 456899999999999988888999999999999999999998899999998 9999999999998888889999999999
Q ss_pred EccCCcCCCCCCccccCCCCccEEEeeecCCCCc-CchhhhCCCCCcEEEeecCcCCCCChhhhc---------------
Q 005361 169 SIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGE-LPAELTKLTNLNDLRISDNNFSGKIPEFIG--------------- 232 (700)
Q Consensus 169 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~--------------- 232 (700)
+|++|++++..+..|+++++|++|+|++|.++.. .|..+..+++|++|++++|++++..+..+.
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls 209 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 209 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcc
Confidence 9999999977777899999999999999999753 578888999999999998876532211100
Q ss_pred --------------------------------------------------------------------------------
Q 005361 233 -------------------------------------------------------------------------------- 232 (700)
Q Consensus 233 -------------------------------------------------------------------------------- 232 (700)
T Consensus 210 ~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~ 289 (635)
T 4g8a_A 210 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 289 (635)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEE
T ss_pred cCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhh
Confidence
Q ss_pred -------------------------------------------------------------------------------C
Q 005361 233 -------------------------------------------------------------------------------K 233 (700)
Q Consensus 233 -------------------------------------------------------------------------------~ 233 (700)
.
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~ 369 (635)
T 4g8a_A 290 YLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD 369 (635)
T ss_dssp CCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCB
T ss_pred hhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccc
Confidence 0
Q ss_pred CCcccEEEccCCCCCC----------------------------------------------------------------
Q 005361 234 WKKIQKLHIQGSSLEG---------------------------------------------------------------- 249 (700)
Q Consensus 234 l~~L~~L~L~~n~l~~---------------------------------------------------------------- 249 (700)
+++|+.|+++.|.+..
T Consensus 370 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~ 449 (635)
T 4g8a_A 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 449 (635)
T ss_dssp CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCE
T ss_pred ccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccc
Confidence 1223333333332210
Q ss_pred ----------CchhhhhcCCCCCEEEcCCCCCCCCcccc-cCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCC
Q 005361 250 ----------PIPASISALTSLTDLRISDLKGSESAFPK-LDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNN 317 (700)
Q Consensus 250 ----------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 317 (700)
..+..+..+++|+.|++++|.......|. +.. ++|+.|+|++|+|++..|..|.++++|++|+|++|+
T Consensus 450 l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~ 529 (635)
T 4g8a_A 450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 529 (635)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred ccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCc
Confidence 01111222233333444433322222222 444 789999999999998889999999999999999999
Q ss_pred CCCCChhhHhcCCCCCEEEccCCcCCCCCchhhh---cCCCeeeeecCcccccCCCCCCCCCCCccceecccCCCCCCCC
Q 005361 318 LTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF---NSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDK 394 (700)
Q Consensus 318 l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~---~~l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~~~~~~~ 394 (700)
|++..|..|..+++|+.|+|++|+|++..|..+. .+++.|+|++| +|.|+|...||++|+...+..+..
T Consensus 530 l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N--------p~~C~C~~~~~~~wl~~~~~~~~~ 601 (635)
T 4g8a_A 530 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN--------DFACTCEHQSFLQWIKDQRQLLVE 601 (635)
T ss_dssp CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTC--------CBCCSGGGHHHHHHHHHTTTTBSC
T ss_pred CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCC--------CCcccCCcHHHHHHHHhCCCccCC
Confidence 9988888899999999999999999987777653 46889999999 555999999999999766544432
Q ss_pred cccccccCCCCCCCCCCcce
Q 005361 395 VHPCLRQNFPCSAPADQYHY 414 (700)
Q Consensus 395 ~~~~~~~~~~c~~p~~~~~~ 414 (700)
...+.|+.|...++.
T Consensus 602 -----~~~~~C~~P~~~~g~ 616 (635)
T 4g8a_A 602 -----VERMECATPSDKQGM 616 (635)
T ss_dssp -----GGGCBBCSSTTTTTC
T ss_pred -----CCCceeCCchHHCCC
Confidence 256789999877654
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.98 E-value=1.8e-31 Score=304.29 Aligned_cols=132 Identities=28% Similarity=0.328 Sum_probs=71.8
Q ss_pred cCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEE
Q 005361 91 TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLS 169 (700)
Q Consensus 91 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 169 (700)
+.+++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..|..++ |++|+|++|.+++..|..|.++++|++|+
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 34566666666666655555566666666666666666655555555555 66666666666555555555555555555
Q ss_pred ccCCcCCCCCCccccCCCCccEEEeeecCCCC-cCchhhhCCCCCcEEEeecCc
Q 005361 170 IEGNLFTGSIPPDIRKLINLQKLILSSNSFTG-ELPAELTKLTNLNDLRISDNN 222 (700)
Q Consensus 170 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~ 222 (700)
|++|.+.+..+..++++++|++|++++|.+++ .+|..+.++++|++|++++|.
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 55555554433444444445555554444443 234444444444444444443
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=3.9e-32 Score=309.71 Aligned_cols=307 Identities=19% Similarity=0.266 Sum_probs=200.9
Q ss_pred cEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchh-------------
Q 005361 93 HVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKV------------- 158 (700)
Q Consensus 93 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~------------- 158 (700)
+++.|++++|.+++..+..|..+++|++|++++|.++ .+|..+..++ |++|++++|.+.+..|..
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 4555555555555544444555555555555555554 2333344444 555555555554444444
Q ss_pred ------------cCCCCCCCEEEccCCcCCCCC--CccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCC
Q 005361 159 ------------LTNITTLKNLSIEGNLFTGSI--PPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFS 224 (700)
Q Consensus 159 ------------~~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 224 (700)
+..+++|++|++++|.+.+.. +..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 445555555555555554333 444555666666666666665555566666666666666666666
Q ss_pred CCChh-hhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCccc---ccCc-cCccEEEcccCCCCCCCc
Q 005361 225 GKIPE-FIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFP---KLDK-MNLKTLILTKCLIHGEIP 299 (700)
Q Consensus 225 ~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~---~l~~-~~L~~L~L~~n~l~~~~p 299 (700)
+..+. .+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+....++ .+.. ++|+.|+|++|++++..|
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 493 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh
Confidence 54433 366777777777777777777777777788888888887776553332 2444 788888888888887778
Q ss_pred hhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhh--hcCCCeeeeecCcccccCCCCCCCCCC
Q 005361 300 DYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYI--FNSNKNVDISLNNFTWESSDPIECPRG 377 (700)
Q Consensus 300 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~--~~~l~~L~ls~N~l~~~~p~~~~C~~~ 377 (700)
..+..+++|+.|+|++|++++..|..+..++.| .|+|++|++++..|..+ +++++.|++++|++ .|+|.
T Consensus 494 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~c~c~ 564 (606)
T 3t6q_A 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL--------DCTCS 564 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCE--------ECSGG
T ss_pred hhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCc--------cccCC
Confidence 888888888888888888888888888888888 88888888886666544 35788888888855 49999
Q ss_pred CccceecccCCCCCCCCcccccccCCCCCCCCCCcce
Q 005361 378 SVNLVESYSSPRNKLDKVHPCLRQNFPCSAPADQYHY 414 (700)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~~ 414 (700)
..|++.|+......+. ....+.|..|....+.
T Consensus 565 ~~~~~~w~~~~~~~~~-----~~~~~~C~~p~~~~g~ 596 (606)
T 3t6q_A 565 NIYFLEWYKENMQKLE-----DTEDTLCENPPLLRGV 596 (606)
T ss_dssp GHHHHHHHHHCGGGEE-----CGGGCBEEESGGGTTC
T ss_pred cHHHHHHHHhCccccc-----CCCCCeeCCchHhCCC
Confidence 9999999976533322 1356778887655543
No 11
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=1.4e-30 Score=301.05 Aligned_cols=313 Identities=18% Similarity=0.229 Sum_probs=243.2
Q ss_pred CcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCC--cccccccc---cccEEEccCCCCCCCCchhcCCCCCCC
Q 005361 92 CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGS--FSPQWASL---QLVELSVMGNRLSGPFPKVLTNITTLK 166 (700)
Q Consensus 92 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~l---~L~~L~L~~n~l~~~~p~~~~~l~~L~ 166 (700)
.+++.|++++|.+++..+..|.++++|++|++++|.+... ....+..+ .|+.|++++|.+++..|..|..+++|+
T Consensus 329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 408 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408 (680)
T ss_dssp TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence 4677888888888877777788888888888888765432 22233322 388889999999888888899999999
Q ss_pred EEEccCCcCCCCCC-ccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCC--CCChhhhcCCCcccEEEcc
Q 005361 167 NLSIEGNLFTGSIP-PDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFS--GKIPEFIGKWKKIQKLHIQ 243 (700)
Q Consensus 167 ~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~L~ 243 (700)
+|+|++|.+.+.+| ..|.++++|++|++++|.+.+..+..|..+++|+.|++++|.+. +..|..+..+++|+.|+|+
T Consensus 409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls 488 (680)
T 1ziw_A 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 488 (680)
T ss_dssp EEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECC
T ss_pred EEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECC
Confidence 99999999986555 67889999999999999998888888999999999999999886 5678889999999999999
Q ss_pred CCCCCCCchhhhhcCCCCCEEEcCCCCCCCCc--------ccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEecc
Q 005361 244 GSSLEGPIPASISALTSLTDLRISDLKGSESA--------FPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLS 314 (700)
Q Consensus 244 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~--------~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 314 (700)
+|.+++..+..|..+++|+.|++++|.+.... ...+.. ++|+.|+|++|+++...+..|..+++|+.|+|+
T Consensus 489 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 568 (680)
T 1ziw_A 489 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG 568 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECC
Confidence 99999888888999999999999998876532 122455 899999999999996666689999999999999
Q ss_pred CCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhh---hcCCCeeeeecCcccccCCCCCCCCCCC-ccceecccCCCC
Q 005361 315 FNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYI---FNSNKNVDISLNNFTWESSDPIECPRGS-VNLVESYSSPRN 390 (700)
Q Consensus 315 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~---~~~l~~L~ls~N~l~~~~p~~~~C~~~~-~~~~~~~~~~~~ 390 (700)
+|++++..+..|..+++|+.|+|++|++++..|..+ +++++.|++++| +|.|+|.. .||..|+.....
T Consensus 569 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N--------~~~c~c~~~~~~~~~~~~~~~ 640 (680)
T 1ziw_A 569 LNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN--------PFDCTCESIAWFVNWINETHT 640 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTC--------CCCBCCCCCSSEECCSSCC--
T ss_pred CCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCC--------CcccCCccHHHHHHHHHhcCc
Confidence 999998888888999999999999999997666543 468999999999 66699996 899999876543
Q ss_pred CCCCcccccccCCCCCCCCCCcceee
Q 005361 391 KLDKVHPCLRQNFPCSAPADQYHYTL 416 (700)
Q Consensus 391 ~~~~~~~~~~~~~~c~~p~~~~~~~~ 416 (700)
.+. .....+.|..|...++..+
T Consensus 641 ~~~----~~~~~~~C~~p~~~~g~~l 662 (680)
T 1ziw_A 641 NIP----ELSSHYLCNTPPHYHGFPV 662 (680)
T ss_dssp --------------------------
T ss_pred ccc----cccCCcEECCchHHCCCcc
Confidence 332 2235678888876655433
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=1.9e-31 Score=304.45 Aligned_cols=280 Identities=20% Similarity=0.292 Sum_probs=244.1
Q ss_pred CCCcCchhhcCCCCCCEEECcCCCCCCC-----------------cccccc--ccc-ccEEEccCCCCCCCCchhcCCCC
Q 005361 104 LTGTLPTELSKLRYLKQLDLSRNCLTGS-----------------FSPQWA--SLQ-LVELSVMGNRLSGPFPKVLTNIT 163 (700)
Q Consensus 104 l~~~~~~~l~~l~~L~~L~L~~n~l~~~-----------------~~~~~~--~l~-L~~L~L~~n~l~~~~p~~~~~l~ 163 (700)
+++ +|..|+++++|++|+|++|.+++. +|..+. .++ |++|++++|.+.+.+|..|.+++
T Consensus 195 l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 273 (636)
T 4eco_A 195 ITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273 (636)
T ss_dssp EEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS
T ss_pred Ccc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCC
Confidence 335 788899999999999999999985 888888 888 99999999999999999999999
Q ss_pred CCCEEEccCCc-CCC-CCCccccCC------CCccEEEeeecCCCCcCch--hhhCCCCCcEEEeecCcCCCCChhhhcC
Q 005361 164 TLKNLSIEGNL-FTG-SIPPDIRKL------INLQKLILSSNSFTGELPA--ELTKLTNLNDLRISDNNFSGKIPEFIGK 233 (700)
Q Consensus 164 ~L~~L~L~~n~-l~~-~~p~~~~~l------~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 233 (700)
+|++|+|++|+ +++ .+|..++.+ ++|+.|++++|.++ .+|. .+..+++|++|++++|.++|.+| .+..
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~ 351 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS 351 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEE
T ss_pred CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCC
Confidence 99999999998 887 789888876 99999999999999 7888 89999999999999999998888 8999
Q ss_pred CCcccEEEccCCCCCCCchhhhhcCCC-CCEEEcCCCCCCCCcccc-cCc---cCccEEEcccCCCCCCCchhhc-----
Q 005361 234 WKKIQKLHIQGSSLEGPIPASISALTS-LTDLRISDLKGSESAFPK-LDK---MNLKTLILTKCLIHGEIPDYIG----- 303 (700)
Q Consensus 234 l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~-l~~---~~L~~L~L~~n~l~~~~p~~~~----- 303 (700)
+++|+.|+|++|.+. .+|..+..+++ |+.|++++|.+.. +|. +.. ++|+.|++++|.+++.+|..+.
T Consensus 352 l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~--lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~ 428 (636)
T 4eco_A 352 EIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY--IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428 (636)
T ss_dssp EEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSS--CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSS
T ss_pred CCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcc--cchhhhhcccCccCEEECcCCcCCCcchhhhcccccc
Confidence 999999999999999 78888999999 9999999988873 343 333 3899999999999999998888
Q ss_pred --CCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhhc----------CCCeeeeecCcccccCCCC
Q 005361 304 --DMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFN----------SNKNVDISLNNFTWESSDP 371 (700)
Q Consensus 304 --~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~----------~l~~L~ls~N~l~~~~p~~ 371 (700)
.+++|+.|+|++|+++...+..+..+++|+.|+|++|+++ .+|...+. +++.|+|++|.++ .+|..
T Consensus 429 ~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~ 506 (636)
T 4eco_A 429 PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDD 506 (636)
T ss_dssp CCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGG
T ss_pred cccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChh
Confidence 7889999999999999665666778999999999999999 88887665 7899999999998 67765
Q ss_pred CC-CCCCCccceecccCCCCCCCC
Q 005361 372 IE-CPRGSVNLVESYSSPRNKLDK 394 (700)
Q Consensus 372 ~~-C~~~~~~~~~~~~~~~~~~~~ 394 (700)
+. .. ..-++.+....|.+..
T Consensus 507 ~~~~~---l~~L~~L~Ls~N~l~~ 527 (636)
T 4eco_A 507 FRATT---LPYLVGIDLSYNSFSK 527 (636)
T ss_dssp GSTTT---CTTCCEEECCSSCCSS
T ss_pred hhhcc---CCCcCEEECCCCCCCC
Confidence 52 12 2335556666666665
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=1.3e-30 Score=307.67 Aligned_cols=227 Identities=19% Similarity=0.178 Sum_probs=142.9
Q ss_pred ccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCC
Q 005361 183 IRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLT 262 (700)
Q Consensus 183 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 262 (700)
|..+++|+.|+|++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|+.|++++|.+....+..|..+++|+
T Consensus 286 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 365 (844)
T 3j0a_A 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ 365 (844)
T ss_dssp SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCC
T ss_pred hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCC
Confidence 33444555555555555544455555555566666665655555555566666666666666666555555566666666
Q ss_pred EEEcCCCCCCCCcc-----------------c-----------------------ccCc-cCccEEEcccCCCCCC----
Q 005361 263 DLRISDLKGSESAF-----------------P-----------------------KLDK-MNLKTLILTKCLIHGE---- 297 (700)
Q Consensus 263 ~L~l~~n~~~~~~~-----------------~-----------------------~l~~-~~L~~L~L~~n~l~~~---- 297 (700)
.|++++|.+..... | .+.. ++|+.|+|++|++++.
T Consensus 366 ~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 445 (844)
T 3j0a_A 366 TLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445 (844)
T ss_dssp EEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSS
T ss_pred EEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccc
Confidence 66666655432110 0 0001 3455555555555422
Q ss_pred --------------------------CchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhh
Q 005361 298 --------------------------IPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF 351 (700)
Q Consensus 298 --------------------------~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~ 351 (700)
.+..|..+++|+.|+|++|+|++.+|..|..+++|+.|+|++|++++..|..+.
T Consensus 446 ~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 525 (844)
T 3j0a_A 446 TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP 525 (844)
T ss_dssp SSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC
T ss_pred ccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh
Confidence 123355566777777777777777777788889999999999999866666556
Q ss_pred cCCCeeeeecCcccccCCC-------------CCCCCCCCccceecccCCCCCCCCcccccccCCCCCCCCCCcc
Q 005361 352 NSNKNVDISLNNFTWESSD-------------PIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPADQYH 413 (700)
Q Consensus 352 ~~l~~L~ls~N~l~~~~p~-------------~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~ 413 (700)
++++.|+|++|.+++..|. +|.|+|...||..|+...+..+.. ......|..|....+
T Consensus 526 ~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~~C~c~~~~f~~~~~~~~~~~~~----~~~~~~C~~p~~~~g 596 (844)
T 3j0a_A 526 ANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAG----PPADIYCVYPDSFSG 596 (844)
T ss_dssp SCCCEEEEEEECCCCCCSCCCSSCCEEEEEEECCCCSSSCCSHHHHHHHTTTTTCC----CGGGCCCSSCSSSCS
T ss_pred ccccEEECCCCcCCCCChhHhCCcCEEEecCCCcccccccHHHHHHHHhcCccccc----ccccCccCCchhhCC
Confidence 7889999999999988774 688999999999998755433322 235567887765543
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=7e-30 Score=285.47 Aligned_cols=181 Identities=20% Similarity=0.282 Sum_probs=100.4
Q ss_pred CCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCC--CchhhhhcCCCCCEEEcCCCCCCC-CcccccCc-cCccE
Q 005361 211 TNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEG--PIPASISALTSLTDLRISDLKGSE-SAFPKLDK-MNLKT 286 (700)
Q Consensus 211 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~-~~L~~ 286 (700)
++|++|++++|.+++..|..+..+++|+.|++++|.+.+ .+|..+..+++|+.|++++|.+.. .+...+.. ++|+.
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~ 403 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403 (520)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCE
Confidence 344444444444444344444444444444444444443 233344444455555555444433 22112233 45555
Q ss_pred EEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhh---hcCCCeeeeecCc
Q 005361 287 LILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYI---FNSNKNVDISLNN 363 (700)
Q Consensus 287 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~---~~~l~~L~ls~N~ 363 (700)
|+|++|.+++..|..+. ++|+.|+|++|+|+ .+|..+..+++|+.|+|++|+++ .+|... +++++.|++++|+
T Consensus 404 L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 404 LNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp EECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred EECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCC
Confidence 55555555544444332 56777777777776 56666667777788888877777 566542 2356777888774
Q ss_pred ccccCCCCCCCCCCCccc-eecccCCCCCCCCcccccccCCCCCCCCC
Q 005361 364 FTWESSDPIECPRGSVNL-VESYSSPRNKLDKVHPCLRQNFPCSAPAD 410 (700)
Q Consensus 364 l~~~~p~~~~C~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~c~~p~~ 410 (700)
+ .|+|...|+ ..|+...... ...+..|..|..
T Consensus 480 ~--------~c~c~~~~~~~~~~~~~~~~-------~~~~~~C~~p~~ 512 (520)
T 2z7x_B 480 W--------DCSCPRIDYLSRWLNKNSQK-------EQGSAKCSGSGK 512 (520)
T ss_dssp B--------CCCHHHHHHHHHHHHHTTTT-------EESCCBBTTTCC
T ss_pred C--------cccCCchHHHHHHHHhcccc-------CCCCCCcCCccc
Confidence 4 499988888 7787655332 235667877743
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=5e-30 Score=275.73 Aligned_cols=269 Identities=18% Similarity=0.207 Sum_probs=181.6
Q ss_pred CcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEc
Q 005361 92 CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSI 170 (700)
Q Consensus 92 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 170 (700)
.+++.|+++++.++...+..|..+++|++|+|++|.+.+..+..+..++ |++|++++|.+++..|..|.++++|++|+|
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 5788899999988877666788999999999999999888888888888 999999999999888888899999999999
Q ss_pred cCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCC----------------
Q 005361 171 EGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKW---------------- 234 (700)
Q Consensus 171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l---------------- 234 (700)
++|.+....+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++.....+..+
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~ 204 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP 204 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECC
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCC
Confidence 9999985544557889999999999999987778888999999999999998875432222221
Q ss_pred ---------------------CcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccC
Q 005361 235 ---------------------KKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKC 292 (700)
Q Consensus 235 ---------------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n 292 (700)
++|+.|++++|.+++. ..+..+++|+.|++++|.+.......+.. ++|+.|+|++|
T Consensus 205 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 282 (390)
T 3o6n_A 205 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282 (390)
T ss_dssp SSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS
T ss_pred CcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC
Confidence 1233444444444422 23455555555555555444433333333 55555555555
Q ss_pred CCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhhcCCCeeeeecCccc
Q 005361 293 LIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFT 365 (700)
Q Consensus 293 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~ls~N~l~ 365 (700)
++++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|+++ .+|...+++++.|++++|++.
T Consensus 283 ~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 283 RLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp CCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC-CCCCCTTCCCSEEECCSSCEE
T ss_pred cCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc-eeCchhhccCCEEEcCCCCcc
Confidence 5553 3333445555555555555555 34444555555555555555555 334334445555666655433
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.8e-29 Score=286.56 Aligned_cols=269 Identities=18% Similarity=0.207 Sum_probs=180.8
Q ss_pred CcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEc
Q 005361 92 CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSI 170 (700)
Q Consensus 92 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 170 (700)
.+++.++++++.+....+..|..+++|++|+|++|.+.+..+..|..++ |++|+|++|.+++..|..|+++++|++|+|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 4678888998888877777788899999999999999988888888888 999999999999888888899999999999
Q ss_pred cCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCC----------------
Q 005361 171 EGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKW---------------- 234 (700)
Q Consensus 171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l---------------- 234 (700)
++|.+++..+..|.++++|++|+|++|.+++..|..|..+++|++|+|++|.+++.....+..+
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~ 210 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP 210 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECC
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCC
Confidence 9999986655667889999999999999998888889999999999999998876533322221
Q ss_pred ---------------------CcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccC
Q 005361 235 ---------------------KKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKC 292 (700)
Q Consensus 235 ---------------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n 292 (700)
++|+.|+|++|.+++ +..+..+++|+.|++++|.+.......+.. ++|+.|+|++|
T Consensus 211 ~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 288 (597)
T 3oja_B 211 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288 (597)
T ss_dssp TTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS
T ss_pred chhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC
Confidence 123334444444432 234455555555555555444433333333 55555555555
Q ss_pred CCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhhcCCCeeeeecCccc
Q 005361 293 LIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFT 365 (700)
Q Consensus 293 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~ls~N~l~ 365 (700)
.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|+++ .+|...++.++.|++++|++.
T Consensus 289 ~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 289 RLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp CCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC-CCCCCTTCCCSEEECCSSCEE
T ss_pred CCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCC-CcChhhcCCCCEEEeeCCCCC
Confidence 5553 3334444555555555555555 34444555555555555555555 233333445555555555433
No 17
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=7.8e-30 Score=266.96 Aligned_cols=270 Identities=20% Similarity=0.301 Sum_probs=200.4
Q ss_pred hhcCCCCHHHHHHHHHHHHhcCC------CCC----CCCCCCCCCCCCCcccCCCCCCCCCCeeeCCC------CCcCcE
Q 005361 31 ATANKLHAEEVKALKQIGRKLGK------KDW----NFGVDPCSQKGNWELSSDDKKGFESNVTCDCS------SATCHV 94 (700)
Q Consensus 31 ~~~~~~~~~e~~al~~l~~~~~~------~~w----~~~~d~C~~~~~w~~~~~~~~~~~~~v~C~~~------~~~~~v 94 (700)
++.+..-.+|++||..+++.+.. ..| ....++| .| .|+.|+.. ....+|
T Consensus 19 ~~~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~----~~-----------~g~~~~~~~~~l~~~~~~~l 83 (328)
T 4fcg_A 19 FQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE----TR-----------TGRALKATADLLEDATQPGR 83 (328)
T ss_dssp CC--CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSC----CS-----------HHHHHHHHHHHHHHHTSTTC
T ss_pred eeccccCchHHHHHHHHHHhccCCchhhhhhhccccccccccc----cc-----------CCcchhhhHHHHhcccccce
Confidence 34445567799999999987631 235 3345566 56 67777421 124678
Q ss_pred EEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCC
Q 005361 95 VTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGN 173 (700)
Q Consensus 95 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 173 (700)
+.|+|+++.++ .+|..+.++++|++|+|++|.++ .+|..+..++ |++|+|++|.++ .+|..+.++++|++|+|++|
T Consensus 84 ~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 84 VALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC 160 (328)
T ss_dssp CEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEE
T ss_pred eEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCC
Confidence 99999999988 66777888999999999999888 6777777777 888888888888 67878888888888888888
Q ss_pred cCCCCCCccccC---------CCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccC
Q 005361 174 LFTGSIPPDIRK---------LINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQG 244 (700)
Q Consensus 174 ~l~~~~p~~~~~---------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 244 (700)
++.+.+|..+.. +++|++|++++|.++ .+|..+..+++|++|+|++|.+++ +|..+..+++|+.|+|++
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRG 238 (328)
T ss_dssp TTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTT
T ss_pred CCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcC
Confidence 887788876654 777777777777777 666667777777777777777774 444566777777777777
Q ss_pred CCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChh
Q 005361 245 SSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPT 324 (700)
Q Consensus 245 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 324 (700)
|.+.+.+|..+..+++|+.| +|++|.+.+.+|..+..+++|+.|+|++|++.+.+|.
T Consensus 239 n~~~~~~p~~~~~l~~L~~L-----------------------~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 239 CTALRNYPPIFGGRAPLKRL-----------------------ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp CTTCCBCCCCTTCCCCCCEE-----------------------ECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred CcchhhhHHHhcCCCCCCEE-----------------------ECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence 77666666666555555544 4455666667787888888888888888888888888
Q ss_pred hHhcCCCCCEEEccCCcCC
Q 005361 325 TFEKLAKTNFMYLTGNKLT 343 (700)
Q Consensus 325 ~~~~l~~L~~L~L~~N~l~ 343 (700)
.+..+++|+.+++..|.+.
T Consensus 296 ~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 296 LIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp GGGGSCTTCEEECCGGGSC
T ss_pred HHhhccCceEEeCCHHHHH
Confidence 8888888888888877665
No 18
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=3.3e-29 Score=273.72 Aligned_cols=288 Identities=17% Similarity=0.191 Sum_probs=209.2
Q ss_pred EEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCC
Q 005361 95 VTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGN 173 (700)
Q Consensus 95 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 173 (700)
..++..+..++ .+|..+. ++++.|+|++|.+.+..+..|..++ |++|+|++|.+++..+..|.++++|++|+|++|
T Consensus 46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 34555666666 3444333 6788888888888877777777777 888888888888777777888888888888888
Q ss_pred cCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCc-CCCCChhhhcCCCcccEEEccCCCCCCCch
Q 005361 174 LFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNN-FSGKIPEFIGKWKKIQKLHIQGSSLEGPIP 252 (700)
Q Consensus 174 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 252 (700)
+++...+..|..+++|++|+|++|.++...+..|..+++|++|+|++|. +....+..|..+++|+.|+|++|.++. +|
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~ 201 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP 201 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc
Confidence 8886656677788888888888888876666677777888888887743 333333456667777777777776652 22
Q ss_pred hhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCC
Q 005361 253 ASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKT 332 (700)
Q Consensus 253 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 332 (700)
.+..+ .+|+.|+|++|.+++..|..|..+++|+.|+|++|+|++..+..|..+++|
T Consensus 202 -~~~~l-----------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 257 (440)
T 3zyj_A 202 -NLTPL-----------------------IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257 (440)
T ss_dssp -CCTTC-----------------------SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTC
T ss_pred -ccCCC-----------------------cccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCC
Confidence 12222 567777788888888888889999999999999999998888889999999
Q ss_pred CEEEccCCcCCCCCchhhh---cCCCeeeeecCcccccCCCCCCCCCCCccceecccCCCCCCCCcccccccCCCCCCCC
Q 005361 333 NFMYLTGNKLTGPVPKYIF---NSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPA 409 (700)
Q Consensus 333 ~~L~L~~N~l~~~ip~~~~---~~l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~ 409 (700)
+.|+|++|++++ +|...+ ++++.|+|++|+ |.|+|...|+..|+....... ......|..|.
T Consensus 258 ~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~Np--------~~CdC~l~~l~~~~~~~~~~~------~~~~~~C~~P~ 322 (440)
T 3zyj_A 258 VEINLAHNNLTL-LPHDLFTPLHHLERIHLHHNP--------WNCNCDILWLSWWIKDMAPSN------TACCARCNTPP 322 (440)
T ss_dssp CEEECTTSCCCC-CCTTTTSSCTTCCEEECCSSC--------EECSSTTHHHHHHHHTTSCSS------CSCCCBEEEST
T ss_pred CEEECCCCCCCc-cChhHhccccCCCEEEcCCCC--------ccCCCCchHHHHHHHhccccC------CccccCCCChh
Confidence 999999999984 444433 478899999994 459999999999987542211 12345688887
Q ss_pred CCcceeeE------EeeCCcce
Q 005361 410 DQYHYTLH------INCGGAKI 425 (700)
Q Consensus 410 ~~~~~~~~------~~c~~~~~ 425 (700)
..++..+. ..|..+.+
T Consensus 323 ~l~g~~l~~l~~~~~~C~~P~i 344 (440)
T 3zyj_A 323 NLKGRYIGELDQNYFTCYAPVI 344 (440)
T ss_dssp TTTTCBCC----CCSCCCCCCE
T ss_pred HhcCccHhHhhhhhccCCCCcc
Confidence 76655432 34655544
No 19
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.1e-29 Score=269.21 Aligned_cols=283 Identities=18% Similarity=0.202 Sum_probs=181.6
Q ss_pred CcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEc
Q 005361 92 CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSI 170 (700)
Q Consensus 92 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 170 (700)
.+++.|++++|.+++..+..|.++++|++|+|++|.+++..+..+..++ |++|++++|.+++..+..|.++++|++|+|
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 4677888888877776666777788888888888877777677777776 888888888877655555777788888888
Q ss_pred cCCcCCCCCC-ccccCCCCccEEEeeec-CCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCC
Q 005361 171 EGNLFTGSIP-PDIRKLINLQKLILSSN-SFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLE 248 (700)
Q Consensus 171 ~~n~l~~~~p-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 248 (700)
++|++....+ ..|..+++|++|++++| .+....+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 8887774333 36777788888888877 455555667777778888888888777776777777778888888877776
Q ss_pred CCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCC----CChh
Q 005361 249 GPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTG----GIPT 324 (700)
Q Consensus 249 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~----~~p~ 324 (700)
......+..+++|+.|++++|.+....+..+.. ....+.++.++|+++.+++ .+|.
T Consensus 212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--------------------~~~~~~l~~l~L~~~~l~~~~l~~l~~ 271 (353)
T 2z80_A 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELST--------------------GETNSLIKKFTFRNVKITDESLFQVMK 271 (353)
T ss_dssp THHHHHHHHTTTEEEEEEESCBCTTCCCC--------------------------CCCCCCEEEEESCBCCHHHHHHHHH
T ss_pred cchhhhhhhcccccEEECCCCcccccccccccc--------------------ccccchhhccccccccccCcchhhhHH
Confidence 433333445667777766665554433222110 1123445555565555553 2455
Q ss_pred hHhcCCCCCEEEccCCcCCCCCchhhh---cCCCeeeeecCcccccCCCCCCCCCC-CccceecccCCCCCCCCcccccc
Q 005361 325 TFEKLAKTNFMYLTGNKLTGPVPKYIF---NSNKNVDISLNNFTWESSDPIECPRG-SVNLVESYSSPRNKLDKVHPCLR 400 (700)
Q Consensus 325 ~~~~l~~L~~L~L~~N~l~~~ip~~~~---~~l~~L~ls~N~l~~~~p~~~~C~~~-~~~~~~~~~~~~~~~~~~~~~~~ 400 (700)
.+..+++|+.|+|++|+++ .+|..++ ++++.|++++|++. |+|. ..++..|+......+ .
T Consensus 272 ~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~--------~~~~~l~~l~~~~~~~~~~~-------~ 335 (353)
T 2z80_A 272 LLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD--------CSCPRIDYLSRWLNKNSQKE-------Q 335 (353)
T ss_dssp HHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC--------CCHHHHHHHHHHHHHTTTTE-------E
T ss_pred HHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCcc--------CcCCCcHHHHHHHHhccccC-------C
Confidence 5666666666666666666 4555432 35566666666433 7774 444556655443322 2
Q ss_pred cCCCCCCCCC
Q 005361 401 QNFPCSAPAD 410 (700)
Q Consensus 401 ~~~~c~~p~~ 410 (700)
....|..|..
T Consensus 336 ~~~~C~~p~~ 345 (353)
T 2z80_A 336 GSAKCSGSGK 345 (353)
T ss_dssp SCCBBTTTCC
T ss_pred CCcccCCCCC
Confidence 4556666543
No 20
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=4.9e-29 Score=284.05 Aligned_cols=178 Identities=18% Similarity=0.147 Sum_probs=155.6
Q ss_pred CcCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEE
Q 005361 90 ATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNL 168 (700)
Q Consensus 90 ~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L 168 (700)
.+.+++.|+|++|.+++..|..|.++++|++|+|++|.+.+..|..|..++ |++|+|++|.+++..|..|.++++|++|
T Consensus 31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL 110 (606)
T ss_dssp SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEE
T ss_pred CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEe
Confidence 456899999999999999899999999999999999999999899999998 9999999999998889999999999999
Q ss_pred EccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCccc--EEEccCCC
Q 005361 169 SIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQ--KLHIQGSS 246 (700)
Q Consensus 169 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~L~~n~ 246 (700)
+|++|.+++..+..+.++++|++|++++|.+++.....+..+++|++|++++|.+++..+..+..+++|+ .|++++|.
T Consensus 111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred eccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc
Confidence 9999999977678899999999999999999975544555699999999999999988888999999999 89999999
Q ss_pred CCCCchhhhhcCCCCCEEEcCC
Q 005361 247 LEGPIPASISALTSLTDLRISD 268 (700)
Q Consensus 247 l~~~~~~~~~~l~~L~~L~l~~ 268 (700)
+.+..|..+.. .+|+.|++++
T Consensus 191 l~~~~~~~~~~-~~L~~L~l~~ 211 (606)
T 3t6q_A 191 IAGIEPGAFDS-AVFQSLNFGG 211 (606)
T ss_dssp CCEECTTTTTT-CEEEEEECTT
T ss_pred cCccChhHhhh-ccccccccCC
Confidence 98766655543 3444444443
No 21
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.9e-29 Score=276.68 Aligned_cols=276 Identities=15% Similarity=0.162 Sum_probs=216.0
Q ss_pred EEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCc
Q 005361 96 TIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNL 174 (700)
Q Consensus 96 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 174 (700)
.++.++..++. +|..+. ++|++|+|++|.+++..+..|..++ |++|+|++|.+++..+..|.++++|++|+|++|.
T Consensus 58 ~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 58 KVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 34455555553 444332 6899999999999988888888888 9999999999998888889999999999999999
Q ss_pred CCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecC-cCCCCChhhhcCCCcccEEEccCCCCCCCchh
Q 005361 175 FTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDN-NFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPA 253 (700)
Q Consensus 175 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 253 (700)
++...+..|..+++|++|+|++|.++...+..|..+++|+.|++++| .+....+..+..+++|+.|+|++|.+++. |
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~- 212 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P- 212 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-
Confidence 99777777899999999999999999777778999999999999984 45544455788999999999999998843 3
Q ss_pred hhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCC
Q 005361 254 SISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTN 333 (700)
Q Consensus 254 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 333 (700)
.+..++ +|+.|+|++|.+++..|..|..+++|+.|+|++|++++..+..|..+++|+
T Consensus 213 ~~~~l~-----------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 269 (452)
T 3zyi_A 213 NLTPLV-----------------------GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269 (452)
T ss_dssp CCTTCT-----------------------TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cccccc-----------------------cccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCC
Confidence 233333 556666777888878888899999999999999999988888899999999
Q ss_pred EEEccCCcCCCCCchhh---hcCCCeeeeecCcccccCCCCCCCCCCCccceecccCCCCCCCCcccccccCCCCCCCCC
Q 005361 334 FMYLTGNKLTGPVPKYI---FNSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPAD 410 (700)
Q Consensus 334 ~L~L~~N~l~~~ip~~~---~~~l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~ 410 (700)
.|+|++|++++ +|... +++++.|+|++| +|.|+|...|+..|+....... ......|..|..
T Consensus 270 ~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N--------p~~CdC~~~~l~~~l~~~~~~~------~~~~~~C~~P~~ 334 (452)
T 3zyi_A 270 ELNLAHNNLSS-LPHDLFTPLRYLVELHLHHN--------PWNCDCDILWLAWWLREYIPTN------STCCGRCHAPMH 334 (452)
T ss_dssp EEECCSSCCSC-CCTTSSTTCTTCCEEECCSS--------CEECSTTTHHHHHHHHHHC---------CCSSCBEEESTT
T ss_pred EEECCCCcCCc-cChHHhccccCCCEEEccCC--------CcCCCCCchHHHHHHHHhCccC------CccCcEeCCchH
Confidence 99999999984 44433 347889999999 4559999999998876432111 112346777766
Q ss_pred Ccce
Q 005361 411 QYHY 414 (700)
Q Consensus 411 ~~~~ 414 (700)
.++.
T Consensus 335 l~g~ 338 (452)
T 3zyi_A 335 MRGR 338 (452)
T ss_dssp TTTC
T ss_pred hccc
Confidence 5544
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=1.1e-28 Score=272.64 Aligned_cols=293 Identities=18% Similarity=0.186 Sum_probs=235.8
Q ss_pred EEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCc
Q 005361 96 TIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNL 174 (700)
Q Consensus 96 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 174 (700)
.++.+++.++. +|..+ .++|+.|+|++|.+++..+..|..++ |++|+|++|.+++..|..|.++++|++|+|++|.
T Consensus 15 ~v~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 15 AVLCHRKRFVA-VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp EEECCSCCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCc-CCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 45556666663 44433 36899999999999998889999998 9999999999998889999999999999999999
Q ss_pred CCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhh
Q 005361 175 FTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPAS 254 (700)
Q Consensus 175 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 254 (700)
+....+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|+.|+|++|.+++..+..
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 171 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence 99766677899999999999999999888899999999999999999999888889999999999999999999888888
Q ss_pred hhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCC
Q 005361 255 ISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTN 333 (700)
Q Consensus 255 ~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 333 (700)
+..+++|+.|++++|.+.......+.. ++|+.|++++|.+.+.+|.......+|+.|+|++|++++..+..+..+++|+
T Consensus 172 l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 251 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251 (477)
T ss_dssp HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCC
T ss_pred hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccC
Confidence 999999999999998887655445555 7888888888777666666555556788888888888766556777888888
Q ss_pred EEEccCCcCCCCCchhh--hcCCCeeeeecCcccccCCCCCCCCCCCccceecccCCCCCCCCc
Q 005361 334 FMYLTGNKLTGPVPKYI--FNSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKV 395 (700)
Q Consensus 334 ~L~L~~N~l~~~ip~~~--~~~l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~~~~~~~~ 395 (700)
.|+|++|++++..+..+ +.+++.|+|++|.+++..|..+ ..+ .-++.+....|.+...
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l---~~L~~L~L~~N~l~~~ 311 (477)
T 2id5_A 252 FLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF-RGL---NYLRVLNVSGNQLTTL 311 (477)
T ss_dssp EEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTB-TTC---TTCCEEECCSSCCSCC
T ss_pred eeECCCCcCCccChhhccccccCCEEECCCCccceECHHHh-cCc---ccCCEEECCCCcCcee
Confidence 88888888774444333 2467788888888777766655 222 2344455555555543
No 23
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=4.8e-29 Score=281.97 Aligned_cols=101 Identities=18% Similarity=0.281 Sum_probs=58.9
Q ss_pred cCccEEEcccCCCC-CCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhh--hcCCCeee
Q 005361 282 MNLKTLILTKCLIH-GEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYI--FNSNKNVD 358 (700)
Q Consensus 282 ~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~--~~~l~~L~ 358 (700)
++|+.|+|++|.++ +.+|..+..+++|+.|+|++|++++..|..|..+++|+.|++++|++++..|..+ +++++.|+
T Consensus 445 ~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 524 (570)
T 2z63_A 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIW 524 (570)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEE
Confidence 44555555555554 3445555555666666666666665555566666666666666666664444333 23556666
Q ss_pred eecCcccccCCCCCCCCCCCccce-ecccCCCC
Q 005361 359 ISLNNFTWESSDPIECPRGSVNLV-ESYSSPRN 390 (700)
Q Consensus 359 ls~N~l~~~~p~~~~C~~~~~~~~-~~~~~~~~ 390 (700)
+++|+ |.|+|...+++ .|+.....
T Consensus 525 l~~N~--------~~~~~~~~~~~~~wl~~~~~ 549 (570)
T 2z63_A 525 LHTNP--------WDCSCPRIDYLSRWLNKNSQ 549 (570)
T ss_dssp CCSSC--------BCCCTTTTHHHHHHHHHTGG
T ss_pred ecCCc--------ccCCCcchHHHHHHHHhccc
Confidence 66664 44888888877 78766543
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=7.1e-29 Score=279.86 Aligned_cols=147 Identities=17% Similarity=0.173 Sum_probs=80.2
Q ss_pred cCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCc-cc-ccCc-cCccEEEcccCCCCCCCch-hhcCC--
Q 005361 232 GKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESA-FP-KLDK-MNLKTLILTKCLIHGEIPD-YIGDM-- 305 (700)
Q Consensus 232 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~-~l~~-~~L~~L~L~~n~l~~~~p~-~~~~l-- 305 (700)
..+++|++|++++|.+++..|..+..+++|+.|++++|.+.... .+ .+.. ++|+.|+|++|.+++.+|. .+..+
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 34445555555555555545555555555555555555444321 11 1222 4455555555555442222 23333
Q ss_pred --------------------CCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchh-h--hcCCCeeeeecC
Q 005361 306 --------------------TKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKY-I--FNSNKNVDISLN 362 (700)
Q Consensus 306 --------------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~-~--~~~l~~L~ls~N 362 (700)
++|+.|+|++|+|+ .+|..+..+++|+.|+|++|+++ .+|.. + +++++.|++++|
T Consensus 430 L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSC
T ss_pred CCEEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCC
Confidence 45666666666666 44544456677777777777776 45554 2 235666777777
Q ss_pred cccccCCCCCCCCCCCcccee-cccCC
Q 005361 363 NFTWESSDPIECPRGSVNLVE-SYSSP 388 (700)
Q Consensus 363 ~l~~~~p~~~~C~~~~~~~~~-~~~~~ 388 (700)
+|.|+|...|++. |....
T Consensus 508 --------~~~c~c~~~~~~~~~~~~~ 526 (562)
T 3a79_B 508 --------PWDCTCPGIRYLSEWINKH 526 (562)
T ss_dssp --------CBCCCHHHHHHHHHHHHHT
T ss_pred --------CcCCCcchHHHHHHHHHhc
Confidence 4559998888876 65544
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=1.6e-28 Score=277.08 Aligned_cols=137 Identities=21% Similarity=0.206 Sum_probs=115.2
Q ss_pred cCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEE
Q 005361 91 TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLS 169 (700)
Q Consensus 91 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 169 (700)
+.+++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..|..++ |++|++++|.++ .+|.. .+++|++|+
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD 127 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence 36799999999999988888999999999999999999998899999988 999999999998 56655 899999999
Q ss_pred ccCCcCCC-CCCccccCCCCccEEEeeecCCCCcCchhhhCCCCC--cEEEeecCcC--CCCChhhhcC
Q 005361 170 IEGNLFTG-SIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNL--NDLRISDNNF--SGKIPEFIGK 233 (700)
Q Consensus 170 L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~l~~ 233 (700)
|++|++++ .+|..|+++++|++|++++|.+++. .+..+++| ++|++++|.+ ++..|..+..
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~ 193 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQI 193 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEE
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccc
Confidence 99999986 3468899999999999999998853 34445555 9999998888 5555544443
No 26
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=2.6e-28 Score=283.67 Aligned_cols=274 Identities=18% Similarity=0.241 Sum_probs=183.8
Q ss_pred cCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCC-CCC-Ccccccccc-------c-ccEEEccCCCCCCCCch--h
Q 005361 91 TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNC-LTG-SFSPQWASL-------Q-LVELSVMGNRLSGPFPK--V 158 (700)
Q Consensus 91 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~~~~l-------~-L~~L~L~~n~l~~~~p~--~ 158 (700)
..+++.|+|++|.+.+.+|..|.++++|+.|+|++|. +++ .+|..+..+ + |++|+|++|.++ .+|. .
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~ 568 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASAS 568 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHH
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhh
Confidence 4579999999999999999999999999999999998 887 677665544 3 999999999999 7887 8
Q ss_pred cCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCC-CcEEEeecCcCCCCChhhhcCCCc-
Q 005361 159 LTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTN-LNDLRISDNNFSGKIPEFIGKWKK- 236 (700)
Q Consensus 159 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~- 236 (700)
+.++++|++|+|++|.++ .+| .|..+++|+.|+|++|.++ .+|..+..+++ |+.|+|++|.++ .+|..+..++.
T Consensus 569 l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~ 644 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVY 644 (876)
T ss_dssp HTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSS
T ss_pred hhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccC
Confidence 999999999999999998 777 8889999999999999988 78888888888 999999888887 66666555432
Q ss_pred -ccEEEccCCCCCCCch----------------------------h-hhhcCCCCCEEEcCCCCCCCCcccccCc-----
Q 005361 237 -IQKLHIQGSSLEGPIP----------------------------A-SISALTSLTDLRISDLKGSESAFPKLDK----- 281 (700)
Q Consensus 237 -L~~L~L~~n~l~~~~~----------------------------~-~~~~l~~L~~L~l~~n~~~~~~~~~l~~----- 281 (700)
|+.|+|++|.+.+.+| . .+..+++|+.|++++|.+...+...+..
T Consensus 645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l 724 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNY 724 (876)
T ss_dssp CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCC
T ss_pred CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccc
Confidence 6666666666554333 2 2234455555555554444222111111
Q ss_pred ---cCccEEEcccCCCCCCCchhhc--CCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccC------CcCCCCCchhh
Q 005361 282 ---MNLKTLILTKCLIHGEIPDYIG--DMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTG------NKLTGPVPKYI 350 (700)
Q Consensus 282 ---~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~------N~l~~~ip~~~ 350 (700)
++|+.|+|++|+++ .+|..+. .+++|+.|+|++|+|++ +|..+..+++|+.|+|++ |++.+.+|..+
T Consensus 725 ~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l 802 (876)
T 4ecn_A 725 KNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI 802 (876)
T ss_dssp TTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG
T ss_pred cccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHH
Confidence 14555555555555 3444443 45555555555555554 444455555555555543 44445555444
Q ss_pred h--cCCCeeeeecCcccccCCCCC
Q 005361 351 F--NSNKNVDISLNNFTWESSDPI 372 (700)
Q Consensus 351 ~--~~l~~L~ls~N~l~~~~p~~~ 372 (700)
. ++|+.|+|++|.+ +.+|..+
T Consensus 803 ~~L~~L~~L~Ls~N~L-~~Ip~~l 825 (876)
T 4ecn_A 803 TTCPSLIQLQIGSNDI-RKVDEKL 825 (876)
T ss_dssp GGCSSCCEEECCSSCC-CBCCSCC
T ss_pred hcCCCCCEEECCCCCC-CccCHhh
Confidence 2 2455555555555 4444443
No 27
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=2.1e-28 Score=275.35 Aligned_cols=297 Identities=19% Similarity=0.195 Sum_probs=227.8
Q ss_pred cCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEE
Q 005361 91 TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLS 169 (700)
Q Consensus 91 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 169 (700)
..+++.|+|++|.+++..|..|.++++|++|+|++|.+++..|..|..++ |++|++++|.+++..|..|.++++|++|+
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 45899999999999998899999999999999999999998889999998 99999999999988888899999999999
Q ss_pred ccCCcCCC-CCCccccCCCCccEEEeeecCCCCcCc-hhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCC
Q 005361 170 IEGNLFTG-SIPPDIRKLINLQKLILSSNSFTGELP-AELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSL 247 (700)
Q Consensus 170 L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 247 (700)
|++|.+++ ..|..+.++++|++|++++|.+.+.++ ..+..+++|++|++++|.+++..|..+..+++|+.|+++.|.+
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 99999986 356789999999999999998544554 6899999999999999999988898898888888888888887
Q ss_pred CCCchhh-hhcCCCCCEEEcCCCCCCCCcccc---c--------------------------------------------
Q 005361 248 EGPIPAS-ISALTSLTDLRISDLKGSESAFPK---L-------------------------------------------- 279 (700)
Q Consensus 248 ~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~---l-------------------------------------------- 279 (700)
.. +|.. +..+++|+.|++++|.+....+.. .
T Consensus 185 ~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~ 263 (549)
T 2z81_A 185 AF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263 (549)
T ss_dssp TT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred cc-cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence 63 4443 456788888888877665431100 0
Q ss_pred -------------------------------------------Cc-cCccEEEcccCCCCCCCchhh-cCCCCCCEEecc
Q 005361 280 -------------------------------------------DK-MNLKTLILTKCLIHGEIPDYI-GDMTKLKNIDLS 314 (700)
Q Consensus 280 -------------------------------------------~~-~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~Ls 314 (700)
.. .+|+.|++++|.++ .+|..+ ..+++|+.|+|+
T Consensus 264 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls 342 (549)
T 2z81_A 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLS 342 (549)
T ss_dssp ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECC
T ss_pred cccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEcc
Confidence 00 24666666666666 344443 567888888888
Q ss_pred CCCCCCCChhh---HhcCCCCCEEEccCCcCCCCCc--hhh--hcCCCeeeeecCcccccCCCCCCCCCCCccceecccC
Q 005361 315 FNNLTGGIPTT---FEKLAKTNFMYLTGNKLTGPVP--KYI--FNSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSS 387 (700)
Q Consensus 315 ~N~l~~~~p~~---~~~l~~L~~L~L~~N~l~~~ip--~~~--~~~l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~ 387 (700)
+|++++.+|.. +..+++|+.|+|++|++++..+ ..+ +++++.|++++|.++ .+|..+. ...-++.+..
T Consensus 343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~----~~~~L~~L~L 417 (549)
T 2z81_A 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQ----WPEKMRFLNL 417 (549)
T ss_dssp SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCC----CCTTCCEEEC
T ss_pred CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhc----ccccccEEEC
Confidence 88888665433 5677888888888888874322 112 346788888888887 4555431 1223455555
Q ss_pred CCCCCCC
Q 005361 388 PRNKLDK 394 (700)
Q Consensus 388 ~~~~~~~ 394 (700)
..|.+..
T Consensus 418 s~N~l~~ 424 (549)
T 2z81_A 418 SSTGIRV 424 (549)
T ss_dssp TTSCCSC
T ss_pred CCCCccc
Confidence 5555543
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=7.4e-29 Score=272.33 Aligned_cols=257 Identities=16% Similarity=0.175 Sum_probs=186.6
Q ss_pred CcEEEEEecCCCCCCcC-chhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchh--cCCCCCCCE
Q 005361 92 CHVVTIALKAQNLTGTL-PTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKV--LTNITTLKN 167 (700)
Q Consensus 92 ~~v~~L~L~~~~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~--~~~l~~L~~ 167 (700)
.+++.|+|++|.+.+.+ +..|.++++|++|+|++|.+.+..|..+..++ |++|++++|.+++..+.. |..+++|++
T Consensus 54 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~ 133 (455)
T 3v47_A 54 QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM 133 (455)
T ss_dssp TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCE
T ss_pred ccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCE
Confidence 35566666666555333 34455666666666666666555555555555 666666666655433333 555566666
Q ss_pred EEccCCcCCCCCCcc-ccCCCCccEEEeeecCCCCcCchhhhCC------------------------------------
Q 005361 168 LSIEGNLFTGSIPPD-IRKLINLQKLILSSNSFTGELPAELTKL------------------------------------ 210 (700)
Q Consensus 168 L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l------------------------------------ 210 (700)
|+|++|.+.+..|.. +.++++|++|++++|.+++..+..+..+
T Consensus 134 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~ 213 (455)
T 3v47_A 134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTS 213 (455)
T ss_dssp EECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCE
T ss_pred EECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccce
Confidence 666666655544443 4555555555555555554433322211
Q ss_pred -------------------------------------------------------------CCCcEEEeecCcCCCCChh
Q 005361 211 -------------------------------------------------------------TNLNDLRISDNNFSGKIPE 229 (700)
Q Consensus 211 -------------------------------------------------------------~~L~~L~L~~n~l~~~~~~ 229 (700)
++|+.|++++|.+++..|.
T Consensus 214 L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 293 (455)
T 3v47_A 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS 293 (455)
T ss_dssp EEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTT
T ss_pred eeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchh
Confidence 4566666666666666778
Q ss_pred hhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCC
Q 005361 230 FIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKL 308 (700)
Q Consensus 230 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L 308 (700)
.+..+++|+.|+|++|.+.+..|..|..+++|+.|++++|.+.......+.. ++|++|+|++|++++..|..+..+++|
T Consensus 294 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 373 (455)
T 3v47_A 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNL 373 (455)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred hcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccc
Confidence 8899999999999999999888889999999999999999886655555666 899999999999998889999999999
Q ss_pred CEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCch
Q 005361 309 KNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPK 348 (700)
Q Consensus 309 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~ 348 (700)
++|+|++|++++..+..+..+++|+.|+|++|++++..|.
T Consensus 374 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 374 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 9999999999987777889999999999999999998883
No 29
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=8.2e-29 Score=257.61 Aligned_cols=230 Identities=26% Similarity=0.417 Sum_probs=148.9
Q ss_pred ccEEEccCCCCCC--CCchhcCCCCCCCEEEccC-CcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEE
Q 005361 141 LVELSVMGNRLSG--PFPKVLTNITTLKNLSIEG-NLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLR 217 (700)
Q Consensus 141 L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 217 (700)
++.|+|++|.+++ .+|..+.++++|++|+|++ |.+.+.+|..|.++++|++|+|++|.+++.+|..+..+++|++|+
T Consensus 52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 131 (313)
T 1ogq_A 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEe
Confidence 3344444444444 4444455555555555552 444444555555555555555555555544555555555555555
Q ss_pred eecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCC-CCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCC
Q 005361 218 ISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALT-SLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHG 296 (700)
Q Consensus 218 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~ 296 (700)
+++|.+++.+|..+..+++|++|++++|.+++.+|..+..++ +|+.|++++|.+.......+....|+.|+|++|.+++
T Consensus 132 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~ 211 (313)
T 1ogq_A 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEG 211 (313)
T ss_dssp CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEE
T ss_pred CCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccC
Confidence 555555545555555555555555555555544555555554 5555555554443222222333237777788889988
Q ss_pred CCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhh--cCCCeeeeecCcccccCCCC
Q 005361 297 EIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF--NSNKNVDISLNNFTWESSDP 371 (700)
Q Consensus 297 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~--~~l~~L~ls~N~l~~~~p~~ 371 (700)
.+|..+..+++|+.|+|++|++++.+|. +..+++|++|+|++|++++.+|..+. ++++.|+|++|+++|.+|..
T Consensus 212 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 212 DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp CCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred cCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 8999999999999999999999976665 78899999999999999999998875 47999999999999999875
No 30
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=3.3e-28 Score=287.03 Aligned_cols=282 Identities=16% Similarity=0.170 Sum_probs=218.5
Q ss_pred cCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCc-cccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEE
Q 005361 91 TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSF-SPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNL 168 (700)
Q Consensus 91 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L 168 (700)
+.+++.|+|++|.+++..+..|.++++|++|+|++|...+.+ |..|..++ |++|+|++|.+.+..|..|.++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 568999999999999999999999999999999999666555 78899998 9999999999998889999999999999
Q ss_pred EccCCcCCCCCCcc--ccCCCCccEEEeeecCCCCcCc-hhhhCCCCCcEEEeecCcCCCCChhhhcCC--CcccEEEcc
Q 005361 169 SIEGNLFTGSIPPD--IRKLINLQKLILSSNSFTGELP-AELTKLTNLNDLRISDNNFSGKIPEFIGKW--KKIQKLHIQ 243 (700)
Q Consensus 169 ~L~~n~l~~~~p~~--~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~L~ 243 (700)
+|++|.+++.+|.. |.++++|++|+|++|.+++..+ ..|.++++|++|+|++|.+++..+..+..+ ++|+.|+++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 99999999766665 8999999999999999987654 679999999999999999998888877766 778888888
Q ss_pred CCCCCCCchhhhhcCCC------CCEEEcCCCCCCCCcccc---------------------------------------
Q 005361 244 GSSLEGPIPASISALTS------LTDLRISDLKGSESAFPK--------------------------------------- 278 (700)
Q Consensus 244 ~n~l~~~~~~~~~~l~~------L~~L~l~~n~~~~~~~~~--------------------------------------- 278 (700)
.|.+.+..|..+..+.+ |+.|++++|.+.......
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 88877766665555544 777777776432211100
Q ss_pred cCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhh--cCCCe
Q 005361 279 LDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF--NSNKN 356 (700)
Q Consensus 279 l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~--~~l~~ 356 (700)
+...+|+.|+|++|.+.+..+..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..+. ++++.
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 342 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence 0114677777777777766666777777777777777777766666777777777777777777655554442 35667
Q ss_pred eeeecCcccccCCCCC
Q 005361 357 VDISLNNFTWESSDPI 372 (700)
Q Consensus 357 L~ls~N~l~~~~p~~~ 372 (700)
|++++|.+.+..+..+
T Consensus 343 L~L~~N~i~~~~~~~~ 358 (844)
T 3j0a_A 343 IDLQKNHIAIIQDQTF 358 (844)
T ss_dssp EECCSCCCCCCCSSCS
T ss_pred EECCCCCCCccChhhh
Confidence 7777777665555444
No 31
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=1.3e-27 Score=276.18 Aligned_cols=282 Identities=19% Similarity=0.209 Sum_probs=235.9
Q ss_pred cCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEE
Q 005361 91 TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLS 169 (700)
Q Consensus 91 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 169 (700)
+.+++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..+..++ |++|++++|.+++..+..|.++++|++|+
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 46899999999999998888999999999999999999999999999998 99999999999977767899999999999
Q ss_pred ccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhc--CCCcccEEEccCCCC
Q 005361 170 IEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIG--KWKKIQKLHIQGSSL 247 (700)
Q Consensus 170 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l 247 (700)
|++|.+.+..|..|.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+. .+++|+.|++++|.+
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 999999987778899999999999999999988888899999999999999999988877665 568999999999999
Q ss_pred CCCchhhhhcCC---------------------------CCCEEEcCCCCCCCCcccccCc---cCccEEEcccCCCCCC
Q 005361 248 EGPIPASISALT---------------------------SLTDLRISDLKGSESAFPKLDK---MNLKTLILTKCLIHGE 297 (700)
Q Consensus 248 ~~~~~~~~~~l~---------------------------~L~~L~l~~n~~~~~~~~~l~~---~~L~~L~L~~n~l~~~ 297 (700)
.+..|..+..+. +|+.|++++|.+.......+.. ++|+.|+|++|.+++.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 988887776654 4566666665554433333333 4589999999998888
Q ss_pred CchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCC-----Cch----hh--hcCCCeeeeecCcccc
Q 005361 298 IPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGP-----VPK----YI--FNSNKNVDISLNNFTW 366 (700)
Q Consensus 298 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-----ip~----~~--~~~l~~L~ls~N~l~~ 366 (700)
.|..+..+++|+.|+|++|++++..|..|..+++|+.|++++|...+. +|. .+ +++++.|++++|.+++
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 888888889999999999998888888888888888888888765542 221 11 3467888888888888
Q ss_pred cCCCCC
Q 005361 367 ESSDPI 372 (700)
Q Consensus 367 ~~p~~~ 372 (700)
..|..+
T Consensus 344 ~~~~~~ 349 (680)
T 1ziw_A 344 IKSNMF 349 (680)
T ss_dssp CCTTTT
T ss_pred CChhHh
Confidence 766655
No 32
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.1e-27 Score=251.43 Aligned_cols=263 Identities=20% Similarity=0.266 Sum_probs=212.4
Q ss_pred cEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEcc
Q 005361 93 HVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIE 171 (700)
Q Consensus 93 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 171 (700)
+++.++++++.++. +|..+ .++|+.|+|++|.+++..+..+..++ |++|++++|.+++..|..|.++++|++|+|+
T Consensus 32 ~l~~l~~~~~~l~~-lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCS-CCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccc-cCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 56778888887764 44433 26889999999999988877888888 9999999999988888889999999999999
Q ss_pred CCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCC--CChhhhcCCCcccEEEccCCCCCC
Q 005361 172 GNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSG--KIPEFIGKWKKIQKLHIQGSSLEG 249 (700)
Q Consensus 172 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~ 249 (700)
+|.++ .+|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.++.
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 99988 5565554 789999999999987777788899999999999998863 567778889999999999998884
Q ss_pred CchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhc
Q 005361 250 PIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEK 328 (700)
Q Consensus 250 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 328 (700)
+|..+. ++|+.|++++|.+.......+.. ++|+.|+|++|.+++..+..+..+++|+.|+|++|+++ .+|..+..
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred -CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence 444332 78999999988877665555666 88999999999998877778888899999999999998 67778888
Q ss_pred CCCCCEEEccCCcCCCCCchhhh--------cCCCeeeeecCccc
Q 005361 329 LAKTNFMYLTGNKLTGPVPKYIF--------NSNKNVDISLNNFT 365 (700)
Q Consensus 329 l~~L~~L~L~~N~l~~~ip~~~~--------~~l~~L~ls~N~l~ 365 (700)
+++|+.|+|++|++++..+..+. ..++.|++++|++.
T Consensus 262 l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 99999999999999854433332 34668899999875
No 33
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=5.3e-28 Score=270.23 Aligned_cols=274 Identities=16% Similarity=0.173 Sum_probs=202.3
Q ss_pred cCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEE
Q 005361 91 TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLS 169 (700)
Q Consensus 91 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 169 (700)
..+++.|+|++|.+++..|..|.++++|++|+|++|.+++..|..|..++ |++|+|++|.++ .+|.. .+++|++|+
T Consensus 20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLD 96 (520)
T ss_dssp CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEE
T ss_pred cccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEe
Confidence 36899999999999998889999999999999999999998899999998 999999999999 56665 899999999
Q ss_pred ccCCcCCC-CCCccccCCCCccEEEeeecCCCCcCchhhhCCCCC--cEEEeecCcC--CCCChhhhcCCC---------
Q 005361 170 IEGNLFTG-SIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNL--NDLRISDNNF--SGKIPEFIGKWK--------- 235 (700)
Q Consensus 170 L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~l~~l~--------- 235 (700)
|++|.+++ .+|..|+++++|++|++++|.+++ ..+..+++| +.|++++|.+ .+..|..+..+.
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 173 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred ccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEec
Confidence 99999997 478999999999999999999875 345666666 8888888777 444454444322
Q ss_pred --------------------------------------------------------------------------cccEEE
Q 005361 236 --------------------------------------------------------------------------KIQKLH 241 (700)
Q Consensus 236 --------------------------------------------------------------------------~L~~L~ 241 (700)
+|+.|+
T Consensus 174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~ 253 (520)
T 2z7x_B 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253 (520)
T ss_dssp SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred cCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence 455556
Q ss_pred ccCCCCCCCchhhh-----hcCCCCCEEEcCC--------------------------CCCCCCcccccCc-cCccEEEc
Q 005361 242 IQGSSLEGPIPASI-----SALTSLTDLRISD--------------------------LKGSESAFPKLDK-MNLKTLIL 289 (700)
Q Consensus 242 L~~n~l~~~~~~~~-----~~l~~L~~L~l~~--------------------------n~~~~~~~~~l~~-~~L~~L~L 289 (700)
+++|.+.+.+|..+ ..+++|+.+++++ |.+....++ .. ++|++|++
T Consensus 254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~l~~L~~L~L 331 (520)
T 2z7x_B 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCP--SKISPFLHLDF 331 (520)
T ss_dssp EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCC--SSCCCCCEEEC
T ss_pred eecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccch--hhCCcccEEEe
Confidence 66665555555544 3444333333333 322221111 23 67778888
Q ss_pred ccCCCCCCCchhhcCCCCCCEEeccCCCCCC--CChhhHhcCCCCCEEEccCCcCCCCCchhhh---cCCCeeeeecCcc
Q 005361 290 TKCLIHGEIPDYIGDMTKLKNIDLSFNNLTG--GIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF---NSNKNVDISLNNF 364 (700)
Q Consensus 290 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~---~~l~~L~ls~N~l 364 (700)
++|++++.+|..+..+++|+.|+|++|++++ .+|..+..+++|+.|+|++|++++.+|...+ ++++.|++++|.+
T Consensus 332 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l 411 (520)
T 2z7x_B 332 SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL 411 (520)
T ss_dssp CSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCC
T ss_pred ECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCC
Confidence 8888777777777777778888888887775 4456677777788888888777765665433 4567777777777
Q ss_pred cccCCCCC
Q 005361 365 TWESSDPI 372 (700)
Q Consensus 365 ~~~~p~~~ 372 (700)
++.+|..+
T Consensus 412 ~~~~~~~l 419 (520)
T 2z7x_B 412 TDTIFRCL 419 (520)
T ss_dssp CGGGGGSC
T ss_pred Ccchhhhh
Confidence 76665544
No 34
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=2.5e-27 Score=248.63 Aligned_cols=266 Identities=20% Similarity=0.239 Sum_probs=227.0
Q ss_pred cCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEE
Q 005361 91 TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLS 169 (700)
Q Consensus 91 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 169 (700)
..+++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..+..++ |++|++++|.++ .+|..+. ++|++|+
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELR 127 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEE
T ss_pred CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEE
Confidence 45799999999999988888899999999999999999998899999988 999999999998 5565544 7999999
Q ss_pred ccCCcCCCCCCccccCCCCccEEEeeecCCCC--cCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCC
Q 005361 170 IEGNLFTGSIPPDIRKLINLQKLILSSNSFTG--ELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSL 247 (700)
Q Consensus 170 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 247 (700)
+++|.+.+..+..|.++++|+.|++++|.+.. ..+..+..+++|++|++++|.++. +|..+. ++|+.|++++|.+
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l 204 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKI 204 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCC
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcC
Confidence 99999997777789999999999999999964 677889999999999999999984 554443 7999999999999
Q ss_pred CCCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhH
Q 005361 248 EGPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTF 326 (700)
Q Consensus 248 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 326 (700)
++..+..+..+++|+.|++++|.+.......+.. ++|++|+|++|.++ .+|..+..+++|+.|+|++|+|++..+..|
T Consensus 205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence 9888899999999999999998887765555666 89999999999999 778889999999999999999998777766
Q ss_pred hc------CCCCCEEEccCCcCCC-CCchhhhc---CCCeeeeecCc
Q 005361 327 EK------LAKTNFMYLTGNKLTG-PVPKYIFN---SNKNVDISLNN 363 (700)
Q Consensus 327 ~~------l~~L~~L~L~~N~l~~-~ip~~~~~---~l~~L~ls~N~ 363 (700)
.. .+.|+.|++++|.+.. .+++..+. .++.++|++|+
T Consensus 284 ~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 54 3789999999999863 34433333 56788998884
No 35
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.1e-28 Score=256.08 Aligned_cols=278 Identities=20% Similarity=0.267 Sum_probs=192.7
Q ss_pred EEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCC--CchhcCCCCCCCEEEccC
Q 005361 96 TIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGP--FPKVLTNITTLKNLSIEG 172 (700)
Q Consensus 96 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~ 172 (700)
.++.+++.++. +|..+ .++|++|+|++|.++...+..|..++ |++|++++|.++.. .+..+..+++|++|+|++
T Consensus 11 ~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCccc-CCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 45566666663 34333 25788888888888866666666666 77777777777632 245556677777777777
Q ss_pred CcCCCCCCccccCCCCccEEEeeecCCCCcCc-hhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCC-C
Q 005361 173 NLFTGSIPPDIRKLINLQKLILSSNSFTGELP-AELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEG-P 250 (700)
Q Consensus 173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~ 250 (700)
|.+. .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+ .
T Consensus 88 n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 7766 455566677777777777776664433 456666666666666666665555666666666666666666553 2
Q ss_pred chhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCC
Q 005361 251 IPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLA 330 (700)
Q Consensus 251 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 330 (700)
.|..+..+ ++|+.|+|++|.+++..|..+..+++|+.|+|++|++++..+..+..++
T Consensus 167 ~~~~~~~l-----------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 223 (306)
T 2z66_A 167 LPDIFTEL-----------------------RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223 (306)
T ss_dssp ECSCCTTC-----------------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCT
T ss_pred chhHHhhC-----------------------cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcc
Confidence 34444444 4556666666777777788888899999999999999987777888899
Q ss_pred CCCEEEccCCcCCCCCchhhh---cCCCeeeeecCcccccCCCCCCCCCCCccceecccCCCCCCCCcccccccCCCCCC
Q 005361 331 KTNFMYLTGNKLTGPVPKYIF---NSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSA 407 (700)
Q Consensus 331 ~L~~L~L~~N~l~~~ip~~~~---~~l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 407 (700)
+|+.|+|++|++++..|..+. .+++.|+|++|+++ |+|...++.+|+...+..... ...+.|..
T Consensus 224 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~--------~~c~~~~~~~~l~~~~~~~~~-----~~~~~C~~ 290 (306)
T 2z66_A 224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA--------CTCEHQSFLQWIKDQRQLLVE-----VERMECAT 290 (306)
T ss_dssp TCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE--------CSGGGHHHHHHHHHTGGGBSC-----GGGCBEEE
T ss_pred cCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee--------cccChHHHHHHHHhhhhhhcc-----ccccccCC
Confidence 999999999999887776653 36889999999665 999999999998755432221 24567777
Q ss_pred CCCCcc
Q 005361 408 PADQYH 413 (700)
Q Consensus 408 p~~~~~ 413 (700)
|....+
T Consensus 291 p~~~~g 296 (306)
T 2z66_A 291 PSDKQG 296 (306)
T ss_dssp SGGGTT
T ss_pred chhhCC
Confidence 655443
No 36
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=8.8e-28 Score=252.27 Aligned_cols=262 Identities=22% Similarity=0.303 Sum_probs=216.0
Q ss_pred cEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEcc
Q 005361 93 HVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIE 171 (700)
Q Consensus 93 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 171 (700)
+++.++++++.++ .+|..+ .++|+.|+|++|.+.+..+..+..++ |++|++++|.+++..|..|.++++|++|+|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 5778888888887 455544 36899999999999988888888888 9999999999998888899999999999999
Q ss_pred CCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCC--CCChhhhcCCCcccEEEccCCCCCC
Q 005361 172 GNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFS--GKIPEFIGKWKKIQKLHIQGSSLEG 249 (700)
Q Consensus 172 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~L~~n~l~~ 249 (700)
+|.+. .+|..+. ++|++|++++|.++...+..|..+++|++|++++|.++ +..+..+..+ +|+.|++++|.+++
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 99998 5666554 79999999999999777777899999999999999986 3667777777 89999999999885
Q ss_pred CchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhc
Q 005361 250 PIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEK 328 (700)
Q Consensus 250 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 328 (700)
+|..+. ++|+.|++++|.+.......+.. ++|+.|+|++|.+++..+..+..+++|+.|+|++|+++ .+|..+..
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 454443 78999999998887766566666 88999999999999888878889999999999999998 67778889
Q ss_pred CCCCCEEEccCCcCCCCCchhhh--------cCCCeeeeecCccc
Q 005361 329 LAKTNFMYLTGNKLTGPVPKYIF--------NSNKNVDISLNNFT 365 (700)
Q Consensus 329 l~~L~~L~L~~N~l~~~ip~~~~--------~~l~~L~ls~N~l~ 365 (700)
+++|+.|++++|++++..+..+. ..++.|++++|++.
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 99999999999999854443332 23578899999766
No 37
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=3.1e-27 Score=248.06 Aligned_cols=265 Identities=20% Similarity=0.240 Sum_probs=226.2
Q ss_pred cCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEE
Q 005361 91 TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLS 169 (700)
Q Consensus 91 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 169 (700)
..+++.|++++|.+++..+..|.++++|++|+|++|.+++..|..+..++ |++|++++|.++ .+|..+. ++|++|+
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~ 129 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELR 129 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEE
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEE
Confidence 45899999999999988888999999999999999999998899999988 999999999998 5555554 7999999
Q ss_pred ccCCcCCCCCCccccCCCCccEEEeeecCCC--CcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCC
Q 005361 170 IEGNLFTGSIPPDIRKLINLQKLILSSNSFT--GELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSL 247 (700)
Q Consensus 170 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 247 (700)
+++|.+....+..|..+++|+.|++++|.++ +..+..+..+ +|++|++++|.+++ +|..+. ++|+.|++++|.+
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i 205 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKI 205 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCC
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcC
Confidence 9999999777777999999999999999996 3667778888 99999999999985 555443 7899999999999
Q ss_pred CCCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhH
Q 005361 248 EGPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTF 326 (700)
Q Consensus 248 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 326 (700)
++..+..+..+++|+.|++++|.+.......+.. ++|+.|+|++|+++ .+|..+..+++|+.|+|++|+|++..+..|
T Consensus 206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHc
Confidence 9888889999999999999999888766555666 89999999999999 778889999999999999999998777776
Q ss_pred hc------CCCCCEEEccCCcCC--CCCchhh--hcCCCeeeeecCc
Q 005361 327 EK------LAKTNFMYLTGNKLT--GPVPKYI--FNSNKNVDISLNN 363 (700)
Q Consensus 327 ~~------l~~L~~L~L~~N~l~--~~ip~~~--~~~l~~L~ls~N~ 363 (700)
.. .+.|+.|++++|.+. +..|..+ +..++.+++++|+
T Consensus 285 ~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 285 CPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 55 367999999999987 3444433 2467889998883
No 38
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=2.1e-27 Score=267.30 Aligned_cols=159 Identities=21% Similarity=0.266 Sum_probs=127.1
Q ss_pred cCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCC-CCchhcCCCCCCCEE
Q 005361 91 TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSG-PFPKVLTNITTLKNL 168 (700)
Q Consensus 91 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~-~~p~~~~~l~~L~~L 168 (700)
..+++.|+|++|.+++..|..|.++++|++|+|++|.+++..+..+..++ |++|++++|.+++ ..|..+.++++|++|
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 128 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEE
Confidence 45899999999999998889999999999999999999998888899888 9999999999986 356789999999999
Q ss_pred EccCCcCCCCCC-ccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCC
Q 005361 169 SIEGNLFTGSIP-PDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSL 247 (700)
Q Consensus 169 ~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 247 (700)
++++|.+.+.+| ..|.++++|++|++++|.+++..|..+..+++|++|+++.|.+.......+..+++|+.|++++|.+
T Consensus 129 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 208 (549)
T 2z81_A 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL 208 (549)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBC
T ss_pred ECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcc
Confidence 999998544554 5789999999999999999988888877776666666666665422222234455566666655555
Q ss_pred CC
Q 005361 248 EG 249 (700)
Q Consensus 248 ~~ 249 (700)
.+
T Consensus 209 ~~ 210 (549)
T 2z81_A 209 AR 210 (549)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=4.5e-26 Score=240.77 Aligned_cols=260 Identities=21% Similarity=0.290 Sum_probs=213.9
Q ss_pred cCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEE
Q 005361 91 TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLS 169 (700)
Q Consensus 91 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 169 (700)
..+++.|++++|.+++..+ +..+++|++|++++|.++.. +.+..++ |++|++++|.+++..+ +..+++|++|+
T Consensus 65 ~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~ 138 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLN 138 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEE
T ss_pred cCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCchh--hccCCceeEEE
Confidence 4579999999999986544 89999999999999999864 3577777 9999999999985543 88999999999
Q ss_pred ccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCC
Q 005361 170 IEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEG 249 (700)
Q Consensus 170 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 249 (700)
+++|.....+ ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+
T Consensus 139 l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 213 (347)
T 4fmz_A 139 LGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD 213 (347)
T ss_dssp CTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred CCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCC
Confidence 9999766444 448899999999999999885443 8889999999999999985443 7888999999999999886
Q ss_pred CchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhc
Q 005361 250 PIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEK 328 (700)
Q Consensus 250 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 328 (700)
..+ +..+++|+.|++++|.+..... +.. ++|++|++++|.+++. ..+..+++|+.|++++|++++. +.+..
T Consensus 214 ~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~ 285 (347)
T 4fmz_A 214 ITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNN 285 (347)
T ss_dssp CGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGG
T ss_pred Cch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcC
Confidence 544 8888999999999987765443 555 8899999999998854 4578889999999999999864 45788
Q ss_pred CCCCCEEEccCCcCCCCCchhhh--cCCCeeeeecCcccccCC
Q 005361 329 LAKTNFMYLTGNKLTGPVPKYIF--NSNKNVDISLNNFTWESS 369 (700)
Q Consensus 329 l~~L~~L~L~~N~l~~~ip~~~~--~~l~~L~ls~N~l~~~~p 369 (700)
+++|+.|++++|++++..|..+. ++++.|++++|++++..|
T Consensus 286 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 286 LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp CTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred CCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 89999999999999877766553 578899999998887665
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=1.2e-26 Score=249.33 Aligned_cols=258 Identities=17% Similarity=0.164 Sum_probs=215.0
Q ss_pred CcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEc
Q 005361 92 CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSI 170 (700)
Q Consensus 92 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 170 (700)
.+++.|+|++|.+++..+..|..+++|++|+|++|.+.+..+..+..++ |++|++++|.++...+..|.++++|++|+|
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 148 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence 5799999999999988888999999999999999999999888899888 999999999999666666789999999999
Q ss_pred cCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCC-------------------------------------CCC
Q 005361 171 EGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKL-------------------------------------TNL 213 (700)
Q Consensus 171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-------------------------------------~~L 213 (700)
++|.+.+..+..|..+++|++|++++|.+++.....+..+ ++|
T Consensus 149 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L 228 (390)
T 3o6n_A 149 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL 228 (390)
T ss_dssp CSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSC
T ss_pred CCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccc
Confidence 9999998888889999999999999999885432322222 246
Q ss_pred cEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCC
Q 005361 214 NDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCL 293 (700)
Q Consensus 214 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~ 293 (700)
+.|++++|.+++. ..+..+++|++|+|++|.+.+..|..+..+++|+.|++++|.+...+......++|+.|+|++|+
T Consensus 229 ~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~ 306 (390)
T 3o6n_A 229 TILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH 306 (390)
T ss_dssp CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC
T ss_pred cEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc
Confidence 6666666666643 46888999999999999999888999999999999999998877643322223899999999999
Q ss_pred CCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhhcCCC
Q 005361 294 IHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNK 355 (700)
Q Consensus 294 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~ 355 (700)
++ .+|..+..+++|+.|+|++|+++.. + +..+++|+.|++++|+++..-...++..+.
T Consensus 307 l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~ 364 (390)
T 3o6n_A 307 LL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLRALFRNVA 364 (390)
T ss_dssp CC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHHHHTTTCC
T ss_pred ce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHHHHHHHHH
Confidence 99 5677788899999999999999955 3 678899999999999998654444444433
No 41
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=7.2e-27 Score=239.74 Aligned_cols=223 Identities=19% Similarity=0.235 Sum_probs=118.4
Q ss_pred EEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCC
Q 005361 95 VTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGN 173 (700)
Q Consensus 95 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 173 (700)
+.++.+++.++. +|..+ .++|++|+|++|.+++..+..+..++ |++|++++|.+++..|..|.++++|++|+|++|
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 566677777764 34322 45777777777777765555555555 666666666665555555566666666666666
Q ss_pred c-CCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCch
Q 005361 174 L-FTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIP 252 (700)
Q Consensus 174 ~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 252 (700)
. +....|..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|+|++|.++...+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 4 444444555555555555555555554444455555555555555555554444444444444444444444443222
Q ss_pred hhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCC
Q 005361 253 ASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKT 332 (700)
Q Consensus 253 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 332 (700)
..+..++ +|+.|+|++|.+++..|..+..+++|+.|+|++|++++..+..+..+++|
T Consensus 171 ~~~~~l~-----------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 227 (285)
T 1ozn_A 171 RAFRGLH-----------------------SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227 (285)
T ss_dssp TTTTTCT-----------------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTC
T ss_pred HHhcCcc-----------------------ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCccc
Confidence 2233222 23333333344444445555555555555555555555444445555555
Q ss_pred CEEEccCCcCC
Q 005361 333 NFMYLTGNKLT 343 (700)
Q Consensus 333 ~~L~L~~N~l~ 343 (700)
+.|+|++|++.
T Consensus 228 ~~L~l~~N~~~ 238 (285)
T 1ozn_A 228 QYLRLNDNPWV 238 (285)
T ss_dssp CEEECCSSCEE
T ss_pred CEEeccCCCcc
Confidence 55555554443
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=1.3e-25 Score=237.14 Aligned_cols=281 Identities=17% Similarity=0.277 Sum_probs=213.4
Q ss_pred CcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEc
Q 005361 92 CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSI 170 (700)
Q Consensus 92 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 170 (700)
.+++.|+++++.+... + .+..+++|++|++++|.+++..+ +..++ |++|++++|.++. ++ .+.++++|++|++
T Consensus 44 ~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 44 ESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYL 117 (347)
T ss_dssp TTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEEC
T ss_pred ccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEEC
Confidence 4688888988888753 3 37888999999999998886554 67777 9999999998885 33 5888899999999
Q ss_pred cCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCC
Q 005361 171 EGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGP 250 (700)
Q Consensus 171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 250 (700)
++|.+.+. +. +..+++|+.|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+.
T Consensus 118 ~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~ 192 (347)
T 4fmz_A 118 NEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI 192 (347)
T ss_dssp TTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC
T ss_pred cCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc
Confidence 99988843 33 7888999999999886654444 48888999999999988875544 77888999999999988854
Q ss_pred chhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcC
Q 005361 251 IPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKL 329 (700)
Q Consensus 251 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 329 (700)
.+ +..+++|+.|++++|.+..... +.. ++|++|++++|.+++..+ +..+++|+.|+|++|.+++. +.+..+
T Consensus 193 ~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l 264 (347)
T 4fmz_A 193 SP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDL 264 (347)
T ss_dssp GG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTC
T ss_pred cc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcC
Confidence 33 7888899999998877665433 444 789999999999885544 77888999999999988853 467888
Q ss_pred CCCCEEEccCCcCCCCCch-hhhcCCCeeeeecCcccccCCCCCCCCCCCccceecccCCCCCCCCcc
Q 005361 330 AKTNFMYLTGNKLTGPVPK-YIFNSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVH 396 (700)
Q Consensus 330 ~~L~~L~L~~N~l~~~ip~-~~~~~l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~~~~~~~~~ 396 (700)
++|+.|++++|++++. +. ..+++++.|++++|.+++..|..+ +.+ .-++.+....|.+....
T Consensus 265 ~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l---~~L~~L~L~~n~l~~~~ 327 (347)
T 4fmz_A 265 TKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVI-GGL---TNLTTLFLSQNHITDIR 327 (347)
T ss_dssp TTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHH-HTC---TTCSEEECCSSSCCCCG
T ss_pred CCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhHh-hcc---ccCCEEEccCCcccccc
Confidence 8999999999988854 32 234578899999998887766554 222 23445556666665543
No 43
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=3e-27 Score=245.20 Aligned_cols=265 Identities=17% Similarity=0.224 Sum_probs=209.2
Q ss_pred CCeeeCCCC-------CcCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCC--ccccccccc-ccEEEccCCC
Q 005361 81 SNVTCDCSS-------ATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGS--FSPQWASLQ-LVELSVMGNR 150 (700)
Q Consensus 81 ~~v~C~~~~-------~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~l~-L~~L~L~~n~ 150 (700)
..+.|...+ .+.+++.|+|++|.++...+..|.++++|++|+|++|.++.. .+..+..++ |++|++++|.
T Consensus 10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 456665322 345899999999999976666789999999999999999843 245555666 9999999999
Q ss_pred CCCCCchhcCCCCCCCEEEccCCcCCCCCC-ccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCC-CCh
Q 005361 151 LSGPFPKVLTNITTLKNLSIEGNLFTGSIP-PDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSG-KIP 228 (700)
Q Consensus 151 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~ 228 (700)
++ .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ..|
T Consensus 90 i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 168 (306)
T 2z66_A 90 VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168 (306)
T ss_dssp EE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred cc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch
Confidence 98 567779999999999999999986554 578999999999999999998888889999999999999999986 578
Q ss_pred hhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCC
Q 005361 229 EFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKL 308 (700)
Q Consensus 229 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L 308 (700)
..+..+++|+.|++++|.+++..|..+..+++|+.|++++ |.+++..+..+..+++|
T Consensus 169 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-----------------------N~l~~~~~~~~~~l~~L 225 (306)
T 2z66_A 169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH-----------------------NNFFSLDTFPYKCLNSL 225 (306)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-----------------------SCCSBCCSGGGTTCTTC
T ss_pred hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCC-----------------------CccCccChhhccCcccC
Confidence 8899999999999999999977777777777666666555 55655555567778888
Q ss_pred CEEeccCCCCCCCChhhHhcCC-CCCEEEccCCcCCCCCchh----hhcCCCeeeeecCcccccCC
Q 005361 309 KNIDLSFNNLTGGIPTTFEKLA-KTNFMYLTGNKLTGPVPKY----IFNSNKNVDISLNNFTWESS 369 (700)
Q Consensus 309 ~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~ip~~----~~~~l~~L~ls~N~l~~~~p 369 (700)
+.|+|++|++++..|..+..++ +|+.|+|++|++++.-+.. +....+.+.+..+.+....|
T Consensus 226 ~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p 291 (306)
T 2z66_A 226 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP 291 (306)
T ss_dssp CEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEES
T ss_pred CEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCc
Confidence 8888888888887777777774 8888888888887654321 12233444555555543333
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=2.5e-26 Score=260.63 Aligned_cols=246 Identities=19% Similarity=0.203 Sum_probs=185.5
Q ss_pred CCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEE
Q 005361 114 KLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKL 192 (700)
Q Consensus 114 ~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 192 (700)
.+++++.|++++|.+...++..+..++ |++|+|++|.+++..|..|..+++|++|+|++|.+++..|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 468999999999999988888888888 9999999999998888899999999999999999998888889999999999
Q ss_pred EeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCC
Q 005361 193 ILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGS 272 (700)
Q Consensus 193 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 272 (700)
+|++|.+++..+..|..+++|++|+|++|.+++..|..+..+++|+.|+|++|.+++.. +..+++|+.|++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 99999999666667899999999999999999988989999999999999999998653 344555555555554433
Q ss_pred CCccc-----------------ccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEE
Q 005361 273 ESAFP-----------------KLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFM 335 (700)
Q Consensus 273 ~~~~~-----------------~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 335 (700)
....+ .....+|+.|+|++|.+++ +..+..+++|+.|+|++|.+++.+|..|..+++|+.|
T Consensus 206 ~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 283 (597)
T 3oja_B 206 TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 283 (597)
T ss_dssp EEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred cccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEE
Confidence 21111 0011356666666666654 2445566666666666666666556666666666666
Q ss_pred EccCCcCCCCCchhh--hcCCCeeeeecCccc
Q 005361 336 YLTGNKLTGPVPKYI--FNSNKNVDISLNNFT 365 (700)
Q Consensus 336 ~L~~N~l~~~ip~~~--~~~l~~L~ls~N~l~ 365 (700)
+|++|++++ +|... +++|+.|+|++|.++
T Consensus 284 ~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~ 314 (597)
T 3oja_B 284 YISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL 314 (597)
T ss_dssp ECTTSCCCE-EECSSSCCTTCCEEECCSSCCC
T ss_pred ECCCCCCCC-CCcccccCCCCcEEECCCCCCC
Confidence 666666653 33332 345566666666655
No 45
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=5.2e-26 Score=259.03 Aligned_cols=154 Identities=19% Similarity=0.251 Sum_probs=136.7
Q ss_pred EEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCc
Q 005361 96 TIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNL 174 (700)
Q Consensus 96 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 174 (700)
.++.+++.++. +|..+. ++|++|+|++|.+++..+..|..++ |++|++++|.+++..|..|.++++|++|+|++|.
T Consensus 15 ~~~c~~~~l~~-ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 15 TYQCMDQKLSK-VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp EEECTTSCCSS-CCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred ceEccCCCccc-CCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc
Confidence 46666777764 454443 7899999999999998888999998 9999999999998889999999999999999999
Q ss_pred CCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCC-CChhhhcCCCcccEEEccCCCCCCCch
Q 005361 175 FTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSG-KIPEFIGKWKKIQKLHIQGSSLEGPIP 252 (700)
Q Consensus 175 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~ 252 (700)
+++..|..|+++++|++|++++|.+++..+..+..+++|++|++++|.+++ .+|..++++++|++|++++|.+++..+
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~ 170 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence 998889999999999999999999997777889999999999999999986 568999999999999999988765433
No 46
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=2.8e-25 Score=244.40 Aligned_cols=256 Identities=25% Similarity=0.342 Sum_probs=146.1
Q ss_pred cCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEE
Q 005361 91 TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLS 169 (700)
Q Consensus 91 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 169 (700)
..+++.|+|++|.+++..+ +.++++|++|++++|.+.+..+ +..++ |++|++++|.+++..+ +.++++|++|+
T Consensus 67 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 140 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLE 140 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEE
T ss_pred hcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEE
Confidence 3578899999998886654 8889999999999998887665 77777 9999999998886543 88889999999
Q ss_pred ccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCC
Q 005361 170 IEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEG 249 (700)
Q Consensus 170 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 249 (700)
+++|.+.+ ++ .+..+++|+.|+++ |.+.+.. .+..+++|++|++++|.+++. ..+..+++|+.|++++|.+.+
T Consensus 141 l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~ 213 (466)
T 1o6v_A 141 LSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISD 213 (466)
T ss_dssp EEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred CCCCccCC-Ch-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCcccc
Confidence 99888874 33 35555555555554 2333221 255555555555555555432 124555555555555555554
Q ss_pred CchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhc
Q 005361 250 PIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEK 328 (700)
Q Consensus 250 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 328 (700)
..+ +..+++|+.|++++|.+... +.+.. ++|+.|++++|.+++..+ +..+++|+.|+|++|++++..+ +..
T Consensus 214 ~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~ 285 (466)
T 1o6v_A 214 ITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG 285 (466)
T ss_dssp CGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTT
T ss_pred ccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccC
Confidence 333 44455555555555444332 22222 445555555554443322 4444444444444444443222 344
Q ss_pred CCCCCEEEccCCcCCCCCchhhhcCCCeeeeecCccccc
Q 005361 329 LAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWE 367 (700)
Q Consensus 329 l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~ls~N~l~~~ 367 (700)
+++|+.|+|++|++++..+..-+++++.|++++|.+++.
T Consensus 286 l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ 324 (466)
T 1o6v_A 286 LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI 324 (466)
T ss_dssp CTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCC
T ss_pred CCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCc
Confidence 444444444444444333322233444444444444433
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.2e-25 Score=235.03 Aligned_cols=223 Identities=22% Similarity=0.305 Sum_probs=178.1
Q ss_pred CCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEE
Q 005361 114 KLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKL 192 (700)
Q Consensus 114 ~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 192 (700)
..++++.|+|++|.+. .+|..+..++ |++|+|++|.++ .+|..+.++++|++|+|++|.+. .+|..+..+++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 4578899999999888 4555566676 888888888888 77888888888888888888888 678888888888888
Q ss_pred EeeecCCCCcCchhhhC---------CCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCE
Q 005361 193 ILSSNSFTGELPAELTK---------LTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTD 263 (700)
Q Consensus 193 ~L~~n~l~~~~~~~~~~---------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 263 (700)
++++|.+.+.+|..+.. +++|++|+|++|.++ .+|..+..+++|+.|+|++|.+++ +|..+..+++|+.
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEE 233 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCE
Confidence 88888877777776544 777777777777776 566667777777777777777764 4445555555555
Q ss_pred EEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCC
Q 005361 264 LRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLT 343 (700)
Q Consensus 264 L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 343 (700)
|+|++|.+.+.+|..+..+++|+.|+|++|++.+.+|..+..+++|+.|+|++|++.
T Consensus 234 -----------------------L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 234 -----------------------LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp -----------------------EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred -----------------------EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence 555567777788899999999999999999999999999999999999999999999
Q ss_pred CCCchhhhc--CCCeeeeecCcc
Q 005361 344 GPVPKYIFN--SNKNVDISLNNF 364 (700)
Q Consensus 344 ~~ip~~~~~--~l~~L~ls~N~l 364 (700)
+.+|..+.. +++.+++..|.+
T Consensus 291 ~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 291 SRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CCCCGGGGGSCTTCEEECCGGGS
T ss_pred hhccHHHhhccCceEEeCCHHHH
Confidence 999998854 678888877643
No 48
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=6.6e-25 Score=241.46 Aligned_cols=278 Identities=23% Similarity=0.326 Sum_probs=227.9
Q ss_pred CcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEc
Q 005361 92 CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSI 170 (700)
Q Consensus 92 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 170 (700)
.+++.|++.++.+.. +| .+..+++|++|+|++|.+++..+ +..++ |++|++++|.+++..+ +.++++|++|+|
T Consensus 46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L 119 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119 (466)
T ss_dssp HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence 579999999999875 44 48899999999999999997765 77777 9999999999997655 999999999999
Q ss_pred cCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCC
Q 005361 171 EGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGP 250 (700)
Q Consensus 171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 250 (700)
++|.+.+. +. +..+++|++|++++|.+++ ++ .+..+++|++|+++ |.+.+.. .+..+++|+.|++++|.+...
T Consensus 120 ~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~ 192 (466)
T 1o6v_A 120 FNNQITDI-DP-LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI 192 (466)
T ss_dssp CSSCCCCC-GG-GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCCC-hH-HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC
Confidence 99999865 33 8999999999999999985 34 48999999999997 5555443 388999999999999999854
Q ss_pred chhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcC
Q 005361 251 IPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKL 329 (700)
Q Consensus 251 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 329 (700)
..+..+++|+.|++++|.+..... +.. ++|+.|++++|.+++. ..+..+++|+.|+|++|++++..+ +..+
T Consensus 193 --~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l 264 (466)
T 1o6v_A 193 --SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGL 264 (466)
T ss_dssp --GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred --hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcC
Confidence 348899999999999987765432 444 8999999999999854 357889999999999999997655 8899
Q ss_pred CCCCEEEccCCcCCCCCchhhhcCCCeeeeecCcccccCCCCCCCCCCCccceecccCCCCCCCCcc
Q 005361 330 AKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVH 396 (700)
Q Consensus 330 ~~L~~L~L~~N~l~~~ip~~~~~~l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~~~~~~~~~ 396 (700)
++|+.|++++|++++..+..-+++++.|++++|.+.+..| + . ...-++.+....|.+....
T Consensus 265 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~-~---~l~~L~~L~L~~n~l~~~~ 325 (466)
T 1o6v_A 265 TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--I-S---NLKNLTYLTLYFNNISDIS 325 (466)
T ss_dssp TTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG--G-G---GCTTCSEEECCSSCCSCCG
T ss_pred CCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh--h-c---CCCCCCEEECcCCcCCCch
Confidence 9999999999999976554445689999999999987654 2 1 2223455555666655443
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=5.8e-26 Score=247.99 Aligned_cols=230 Identities=22% Similarity=0.245 Sum_probs=199.6
Q ss_pred CcCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEE
Q 005361 90 ATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNL 168 (700)
Q Consensus 90 ~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L 168 (700)
...+++.|+|++|.+++..+..|.++++|++|+|++|.+.+..+..|..++ |++|+|++|.++...+..|..+++|++|
T Consensus 62 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEE
T ss_pred CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCcee
Confidence 346789999999999999889999999999999999999998889999998 9999999999998777789999999999
Q ss_pred EccCCcCCCCCCccccCCCCccEEEeeec-CCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCC
Q 005361 169 SIEGNLFTGSIPPDIRKLINLQKLILSSN-SFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSL 247 (700)
Q Consensus 169 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 247 (700)
+|++|.+....+..|..+++|+.|+|++| .+....+..|.++++|++|+|++|.++ .+| .+..+++|+.|+|++|.+
T Consensus 142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCC
T ss_pred eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCcc
Confidence 99999999777778999999999999995 455444557999999999999999998 445 478899999999999999
Q ss_pred CCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHh
Q 005361 248 EGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFE 327 (700)
Q Consensus 248 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 327 (700)
++..|..|..+++|+.|++++ |++++..+..|..+++|+.|+|++|+|++..+..|.
T Consensus 220 ~~~~~~~~~~l~~L~~L~L~~-----------------------n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 276 (440)
T 3zyj_A 220 SAIRPGSFQGLMHLQKLWMIQ-----------------------SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276 (440)
T ss_dssp CEECTTTTTTCTTCCEEECTT-----------------------CCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTS
T ss_pred CccChhhhccCccCCEEECCC-----------------------CceeEEChhhhcCCCCCCEEECCCCCCCccChhHhc
Confidence 987788888877777666555 566666677788888888999999988877777888
Q ss_pred cCCCCCEEEccCCcCCC
Q 005361 328 KLAKTNFMYLTGNKLTG 344 (700)
Q Consensus 328 ~l~~L~~L~L~~N~l~~ 344 (700)
.+++|+.|+|++|.+.-
T Consensus 277 ~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 277 PLHHLERIHLHHNPWNC 293 (440)
T ss_dssp SCTTCCEEECCSSCEEC
T ss_pred cccCCCEEEcCCCCccC
Confidence 88889999999888753
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=5.2e-26 Score=233.33 Aligned_cols=237 Identities=17% Similarity=0.171 Sum_probs=201.8
Q ss_pred CcCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCC-CCCCCchhcCCCCCCCE
Q 005361 90 ATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNR-LSGPFPKVLTNITTLKN 167 (700)
Q Consensus 90 ~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~-l~~~~p~~~~~l~~L~~ 167 (700)
.+.+++.|++++|.+++..+..|..+++|++|+|++|.+++..+..+..++ |++|++++|. +....|..|..+++|++
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 456899999999999988888899999999999999999988888999988 9999999997 88777889999999999
Q ss_pred EEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCC
Q 005361 168 LSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSL 247 (700)
Q Consensus 168 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 247 (700)
|+|++|.+.+..|..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence 99999999988888999999999999999999977777799999999999999999977777899999999999999999
Q ss_pred CCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHh
Q 005361 248 EGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFE 327 (700)
Q Consensus 248 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 327 (700)
.+..|..+..+++|+.|++ ++|.+++..+..+..+++|+.|+|++|.+....+.. .
T Consensus 190 ~~~~~~~~~~l~~L~~L~l-----------------------~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~ 245 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYL-----------------------FANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-P 245 (285)
T ss_dssp CEECTTTTTTCTTCCEEEC-----------------------CSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-H
T ss_pred cccCHhHccCcccccEeeC-----------------------CCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-H
Confidence 9877877777766666655 456777666777889999999999999998644321 1
Q ss_pred cCCCCCEEEccCCcCCCCCchhh
Q 005361 328 KLAKTNFMYLTGNKLTGPVPKYI 350 (700)
Q Consensus 328 ~l~~L~~L~L~~N~l~~~ip~~~ 350 (700)
-...++.+....+.+....|..+
T Consensus 246 ~~~~l~~~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 246 LWAWLQKFRGSSSEVPCSLPQRL 268 (285)
T ss_dssp HHHHHHHCCSEECCCBEEESGGG
T ss_pred HHHHHHhcccccCccccCCchHh
Confidence 12234455567777777777654
No 51
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=2.5e-25 Score=243.22 Aligned_cols=255 Identities=20% Similarity=0.153 Sum_probs=217.2
Q ss_pred cCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEE
Q 005361 91 TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLS 169 (700)
Q Consensus 91 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 169 (700)
..+++.|++++|.+++. | .+..+++|++|+|++|.+++. + +..++ |++|++++|.+++. + ++++++|++|+
T Consensus 41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN 112 (457)
T ss_dssp HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence 35799999999999975 4 699999999999999999985 3 67777 99999999999975 3 88999999999
Q ss_pred ccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCC
Q 005361 170 IEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEG 249 (700)
Q Consensus 170 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 249 (700)
+++|++++ +| ++.+++|++|++++|.+++. + +..+++|++|++++|...+.+ .+..+++|+.|++++|.+++
T Consensus 113 L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 113 CDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp CCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC
T ss_pred CCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce
Confidence 99999996 44 88999999999999999964 3 788999999999999666555 47889999999999999997
Q ss_pred CchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhc
Q 005361 250 PIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEK 328 (700)
Q Consensus 250 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 328 (700)
+| +..+++|+.|++++|.+.... +.. ++|+.|++++|++++ +| +..+++|+.|+|++|++++..+..+..
T Consensus 185 -l~--l~~l~~L~~L~l~~N~l~~~~---l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~ 255 (457)
T 3bz5_A 185 -LD--VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSK 255 (457)
T ss_dssp -CC--CTTCTTCCEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTT
T ss_pred -ec--cccCCCCCEEECcCCcCCeec---cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCC
Confidence 44 889999999999998887753 444 899999999999997 55 788999999999999999876655555
Q ss_pred CC-------CCCEEEccCCcCCCCCchhhhcCCCeeeeecCcccccCCC
Q 005361 329 LA-------KTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSD 370 (700)
Q Consensus 329 l~-------~L~~L~L~~N~l~~~ip~~~~~~l~~L~ls~N~l~~~~p~ 370 (700)
+. +|+.|++++|++.+.+|..-+++++.|++++|.+.+.+|.
T Consensus 256 L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 256 LTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp CCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEEC
T ss_pred CCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceecc
Confidence 54 5667778888877788876678899999999998888774
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=3.2e-26 Score=242.50 Aligned_cols=264 Identities=18% Similarity=0.184 Sum_probs=194.6
Q ss_pred cCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCC
Q 005361 100 KAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGS 178 (700)
Q Consensus 100 ~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 178 (700)
+++.++. +|..+. ++|++|+|++|.+++..+..+..++ |++|++++|.+++..+..|.++++|++|+|++|.+++.
T Consensus 39 ~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 115 (353)
T 2z80_A 39 SSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115 (353)
T ss_dssp CSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC
T ss_pred CCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC
Confidence 4566663 454443 5899999999999987777888888 99999999999987788899999999999999999865
Q ss_pred CCccccCCCCccEEEeeecCCCCcCc-hhhhCCCCCcEEEeecC-cCCCCChhhhcCCCcccEEEccCCCCCCCchhhhh
Q 005361 179 IPPDIRKLINLQKLILSSNSFTGELP-AELTKLTNLNDLRISDN-NFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASIS 256 (700)
Q Consensus 179 ~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 256 (700)
.+..|.++++|++|++++|.++...+ ..+..+++|++|++++| .+....+..+..+++|+.|++++|.+.+..|..+.
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 195 (353)
T 2z80_A 116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK 195 (353)
T ss_dssp CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHh
Confidence 55558889999999999999885433 47888999999999988 46656677888889999999999988877677777
Q ss_pred cCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhH---hcCCCCC
Q 005361 257 ALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTF---EKLAKTN 333 (700)
Q Consensus 257 ~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~ 333 (700)
.+++|+.|+++ +|.++...+..+..+++|+.|+|++|++++..+..+ ...+.++
T Consensus 196 ~l~~L~~L~l~-----------------------~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~ 252 (353)
T 2z80_A 196 SIQNVSHLILH-----------------------MKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIK 252 (353)
T ss_dssp TCSEEEEEEEE-----------------------CSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCC
T ss_pred ccccCCeecCC-----------------------CCccccchhhhhhhcccccEEECCCCccccccccccccccccchhh
Confidence 66655555554 455543333344557788888888888876554433 3467789
Q ss_pred EEEccCCcCCC----CCchhh--hcCCCeeeeecCcccccCCCCCCCCCCCccceecccCCCCCCC
Q 005361 334 FMYLTGNKLTG----PVPKYI--FNSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLD 393 (700)
Q Consensus 334 ~L~L~~N~l~~----~ip~~~--~~~l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~~~~~~ 393 (700)
.++|++|.+++ .+|..+ +++++.|++++|.++ .+|..+-..+ .-++.+....|.+.
T Consensus 253 ~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l---~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 253 KFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRL---TSLQKIWLHTNPWD 314 (353)
T ss_dssp EEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTC---TTCCEEECCSSCBC
T ss_pred ccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcC---CCCCEEEeeCCCcc
Confidence 99999999876 355554 347999999999998 5665432222 23445555555554
No 53
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=2.9e-27 Score=245.88 Aligned_cols=246 Identities=20% Similarity=0.216 Sum_probs=147.6
Q ss_pred cCCCCCCEEECcCCCCCCCcccccccccccEEEccCCCCC-CCCchhcC-------CCCCCCEEEccCCcCCCCCCccc-
Q 005361 113 SKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLS-GPFPKVLT-------NITTLKNLSIEGNLFTGSIPPDI- 183 (700)
Q Consensus 113 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~-~~~p~~~~-------~l~~L~~L~L~~n~l~~~~p~~~- 183 (700)
...++|+.|++++|.+ .+|..+... |+.|+|++|.+. ..+|..+. ++++|++|+|++|.+++.+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~-L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI-IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH-HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH-HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 4455666666666666 334332222 666666666662 33444443 56667777777777666666654
Q ss_pred -cCCCCccEEEeeecCCCCcCchhhhCC-----CCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCC--chhhh
Q 005361 184 -RKLINLQKLILSSNSFTGELPAELTKL-----TNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGP--IPASI 255 (700)
Q Consensus 184 -~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~ 255 (700)
..+++|++|+|++|.+++. |..+..+ ++|++|+|++|++++..+..+..+++|++|+|++|.+.+. .+..+
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 6666777777777766655 5555555 6677777777777666666666677777777777766543 23333
Q ss_pred --hcCCCCCEEEcCCCCCCCCc-cc-c-cCc-cCccEEEcccCCCCCCCc-hhhcCCCCCCEEeccCCCCCCCChhhHhc
Q 005361 256 --SALTSLTDLRISDLKGSESA-FP-K-LDK-MNLKTLILTKCLIHGEIP-DYIGDMTKLKNIDLSFNNLTGGIPTTFEK 328 (700)
Q Consensus 256 --~~l~~L~~L~l~~n~~~~~~-~~-~-l~~-~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 328 (700)
..+++|+.|++++|.+.... .+ . +.. ++|+.|+|++|++++.+| ..+..+++|+.|+|++|+|+ .+|..+.
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~- 273 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP- 273 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-
Confidence 66667777777766554221 11 1 122 567777777777776554 34455677777777777776 5555444
Q ss_pred CCCCCEEEccCCcCCCCCch-hhhcCCCeeeeecCcccc
Q 005361 329 LAKTNFMYLTGNKLTGPVPK-YIFNSNKNVDISLNNFTW 366 (700)
Q Consensus 329 l~~L~~L~L~~N~l~~~ip~-~~~~~l~~L~ls~N~l~~ 366 (700)
++|+.|+|++|++++. |. .-+++++.|++++|++++
T Consensus 274 -~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp -SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTTC
T ss_pred -CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCCC
Confidence 6677777777777644 43 112356677777776653
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=4.3e-25 Score=241.95 Aligned_cols=227 Identities=17% Similarity=0.177 Sum_probs=168.9
Q ss_pred CEEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecC
Q 005361 119 KQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNS 198 (700)
Q Consensus 119 ~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 198 (700)
+.++.++..++.. |..+. ..+++|+|++|.+++..+..|.++++|++|+|++|.+.+..+..|.++++|++|+|++|.
T Consensus 57 ~~v~c~~~~l~~i-P~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 57 SKVVCTRRGLSEV-PQGIP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp CEEECCSSCCSSC-CSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cEEEECCCCcCcc-CCCCC-CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 4567777777643 33221 128888888888887777788888888888888888887777778888888888888888
Q ss_pred CCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCC-CCCCchhhhhcCCCCCEEEcCCCCCCCCccc
Q 005361 199 FTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSS-LEGPIPASISALTSLTDLRISDLKGSESAFP 277 (700)
Q Consensus 199 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 277 (700)
++...+..|..+++|++|+|++|.++...+..+..+++|+.|+|++|. +....+..|..+++
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~----------------- 197 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN----------------- 197 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTT-----------------
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCC-----------------
Confidence 876666667778888888888887776556667777777777777643 33222233445544
Q ss_pred ccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhh--cCCC
Q 005361 278 KLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF--NSNK 355 (700)
Q Consensus 278 ~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~--~~l~ 355 (700)
|+.|+|++|++++. | .+..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..+. ++++
T Consensus 198 ------L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 269 (452)
T 3zyi_A 198 ------LKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269 (452)
T ss_dssp ------CCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ------CCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCC
Confidence 45555555666643 3 367889999999999999999999999999999999999999977676553 5799
Q ss_pred eeeeecCcccccCCCCC
Q 005361 356 NVDISLNNFTWESSDPI 372 (700)
Q Consensus 356 ~L~ls~N~l~~~~p~~~ 372 (700)
.|+|++|++++..+..+
T Consensus 270 ~L~L~~N~l~~~~~~~~ 286 (452)
T 3zyi_A 270 ELNLAHNNLSSLPHDLF 286 (452)
T ss_dssp EEECCSSCCSCCCTTSS
T ss_pred EEECCCCcCCccChHHh
Confidence 99999999997665554
No 55
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=7.1e-27 Score=242.98 Aligned_cols=243 Identities=21% Similarity=0.274 Sum_probs=204.2
Q ss_pred CcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCC-CCcccccc-------ccc-ccEEEccCCCCCCCCchhc--C
Q 005361 92 CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLT-GSFSPQWA-------SLQ-LVELSVMGNRLSGPFPKVL--T 160 (700)
Q Consensus 92 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~-------~l~-L~~L~L~~n~l~~~~p~~~--~ 160 (700)
.+++.|++++|.+ .+|..+... |+.|+|++|.+. ..++..+. .++ |++|++++|.+++.+|..+ .
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 4677788888988 667766554 889999999984 44555544 456 9999999999998888876 8
Q ss_pred CCCCCCEEEccCCcCCCCCCccccCC-----CCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCC--Chhhh--
Q 005361 161 NITTLKNLSIEGNLFTGSIPPDIRKL-----INLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGK--IPEFI-- 231 (700)
Q Consensus 161 ~l~~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l-- 231 (700)
.+++|++|+|++|.+++. |..+..+ ++|++|++++|.+.+..+..|..+++|++|++++|++.+. .+..+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 999999999999999977 8888877 9999999999999988889999999999999999998765 33444
Q ss_pred cCCCcccEEEccCCCCCCC--ch-hhhhcCCCCCEEEcCCCCCCCCc-ccccCc-cCccEEEcccCCCCCCCchhhcCCC
Q 005361 232 GKWKKIQKLHIQGSSLEGP--IP-ASISALTSLTDLRISDLKGSESA-FPKLDK-MNLKTLILTKCLIHGEIPDYIGDMT 306 (700)
Q Consensus 232 ~~l~~L~~L~L~~n~l~~~--~~-~~~~~l~~L~~L~l~~n~~~~~~-~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~ 306 (700)
..+++|++|+|++|.+++. ++ ..+..+++|+.|++++|.+.... .+.+.. ++|+.|+|++|+|+ .+|..+. +
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~ 274 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--A 274 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--S
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--C
Confidence 8899999999999999842 22 34568899999999999887755 344554 89999999999999 6676665 8
Q ss_pred CCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCC
Q 005361 307 KLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTG 344 (700)
Q Consensus 307 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 344 (700)
+|+.|+|++|+|++. |. +..+++|+.|+|++|++++
T Consensus 275 ~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 275 KLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 999999999999976 55 8999999999999999985
No 56
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=7.1e-25 Score=250.85 Aligned_cols=147 Identities=21% Similarity=0.278 Sum_probs=128.4
Q ss_pred cCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCC
Q 005361 100 KAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGS 178 (700)
Q Consensus 100 ~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 178 (700)
++.+++ .+|..+. +++++|+|++|.|+++.+..|..++ |++|+|++|.|+++.+..|.++++|++|+|++|++++.
T Consensus 39 ~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 39 MELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 115 (635)
T ss_dssp TTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred CCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC
Confidence 344455 3444332 4799999999999998889999998 99999999999988888999999999999999999977
Q ss_pred CCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCC-CChhhhcCCCcccEEEccCCCCCC
Q 005361 179 IPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSG-KIPEFIGKWKKIQKLHIQGSSLEG 249 (700)
Q Consensus 179 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~ 249 (700)
.+..|.++++|++|+|++|.+++..+..|+++++|++|+|++|.++. ..|..+..+++|++|+|++|.+++
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 77789999999999999999997777789999999999999999975 467888999999999999987654
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.2e-26 Score=241.71 Aligned_cols=263 Identities=17% Similarity=0.133 Sum_probs=218.4
Q ss_pred cEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEcc
Q 005361 93 HVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIE 171 (700)
Q Consensus 93 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 171 (700)
++..++++.+.+...+...+..+++|++|+|++|.+++..+..+..++ |++|+|++|.+++..+ +..+++|++|+|+
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 455666777777655666677788999999999999998888999988 9999999999986655 8999999999999
Q ss_pred CCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCc
Q 005361 172 GNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPI 251 (700)
Q Consensus 172 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 251 (700)
+|.+++. ...++|+.|++++|.+++..+. .+++|++|++++|.+++..+..+..+++|+.|+|++|.+.+..
T Consensus 89 ~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 89 NNYVQEL-----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SSEEEEE-----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCccccc-----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 9998732 2448999999999999866544 3688999999999999887888999999999999999999877
Q ss_pred hhhh-hcCCCCCEEEcCCCCCCCCcccccC-ccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcC
Q 005361 252 PASI-SALTSLTDLRISDLKGSESAFPKLD-KMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKL 329 (700)
Q Consensus 252 ~~~~-~~l~~L~~L~l~~n~~~~~~~~~l~-~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 329 (700)
+..+ ..+++|+.|++++|.+... +... .++|++|+|++|++++..+ .+..+++|+.|+|++|+|+ .+|..+..+
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l 236 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFS 236 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred HHHHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhhcC
Confidence 7776 4789999999999887655 3333 3899999999999996554 4889999999999999999 567788999
Q ss_pred CCCCEEEccCCcCC-CCCchhhh--cCCCeeeeecC-cccccCC
Q 005361 330 AKTNFMYLTGNKLT-GPVPKYIF--NSNKNVDISLN-NFTWESS 369 (700)
Q Consensus 330 ~~L~~L~L~~N~l~-~~ip~~~~--~~l~~L~ls~N-~l~~~~p 369 (700)
++|+.|+|++|+++ +.+|..+. +.++.+++++| .+.|..|
T Consensus 237 ~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp TTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred CCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 99999999999998 55665553 35678888855 4666554
No 58
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=1e-24 Score=223.78 Aligned_cols=214 Identities=21% Similarity=0.214 Sum_probs=132.4
Q ss_pred CCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEE
Q 005361 161 NITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKL 240 (700)
Q Consensus 161 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 240 (700)
++++|++++++++.++ .+|..+. ++|+.|+|++|.+++..+..|..+++|++|+|++|.+++..+ ...+++|+.|
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEE
T ss_pred ccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEE
Confidence 3444444444444444 2333221 344444444444444334444444444444444444442211 1344444444
Q ss_pred EccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCC
Q 005361 241 HIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLT 319 (700)
Q Consensus 241 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 319 (700)
+|++|.+. .+|..+..+++|+.|++++|.+.......+.. ++|+.|+|++|++++..+..|..+++|+.|+|++|+|+
T Consensus 83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 44444444 33444444455555555554444333333333 56666677778888777778888999999999999999
Q ss_pred CCChhhHhcCCCCCEEEccCCcCCCCCchhhhc--CCCeeeeecCcccccCCCCCCCCCCCccceecccCCC
Q 005361 320 GGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFN--SNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPR 389 (700)
Q Consensus 320 ~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~--~l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~~ 389 (700)
+..+..|..+++|+.|+|++|+++ .+|..++. .++.|+|++| +|.|+|...++..|+....
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~N--------p~~C~c~~~~l~~wl~~~~ 224 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN--------PWLCNCEILYFRRWLQDNA 224 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSC--------CBCCSGGGHHHHHHHHHTG
T ss_pred ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCC--------CccCcCccHHHHHHHHhCc
Confidence 777777889999999999999998 78887765 5889999999 5569999999999987553
No 59
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=4.7e-24 Score=233.17 Aligned_cols=272 Identities=19% Similarity=0.117 Sum_probs=214.7
Q ss_pred cCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEE
Q 005361 91 TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLS 169 (700)
Q Consensus 91 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 169 (700)
..+++.|+|++|.+++. + +..+++|++|+|++|.+++. + +..++ |++|++++|.+++. + +..+++|++|+
T Consensus 63 l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~ 133 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLN 133 (457)
T ss_dssp CTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEE
Confidence 45799999999999985 3 88999999999999999985 2 77777 99999999999964 4 88999999999
Q ss_pred ccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCC
Q 005361 170 IEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEG 249 (700)
Q Consensus 170 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 249 (700)
+++|++++. .++.+++|++|++++|...+.+ .+..+++|++|++++|.+++ +| +..+++|+.|++++|.+++
T Consensus 134 l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~ 205 (457)
T 3bz5_A 134 CARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITK 205 (457)
T ss_dssp CTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCe
Confidence 999999964 3788999999999999665555 47789999999999999986 44 7888999999999999986
Q ss_pred CchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCC-------CCCEEeccCCCCCCC
Q 005361 250 PIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMT-------KLKNIDLSFNNLTGG 321 (700)
Q Consensus 250 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~-------~L~~L~Ls~N~l~~~ 321 (700)
. .+..+++|+.|++++|.+... | +.. ++|+.|++++|++++..+..+..+. +|+.|++++|.+.+.
T Consensus 206 ~---~l~~l~~L~~L~Ls~N~l~~i--p-~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~ 279 (457)
T 3bz5_A 206 L---DLNQNIQLTFLDCSSNKLTEI--D-VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIY 279 (457)
T ss_dssp C---CCTTCTTCSEEECCSSCCSCC--C-CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCE
T ss_pred e---ccccCCCCCEEECcCCccccc--C-ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCc
Confidence 5 388899999999999888774 4 444 8999999999999987655444443 455666666666665
Q ss_pred ChhhHhcCCCCCEEEccCCcCCCCCchhh----------hcCCCeeeeecCcccccCCCCCCCCCCCccceecccCCCCC
Q 005361 322 IPTTFEKLAKTNFMYLTGNKLTGPVPKYI----------FNSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNK 391 (700)
Q Consensus 322 ~p~~~~~l~~L~~L~L~~N~l~~~ip~~~----------~~~l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~~~~ 391 (700)
+| +..+++|+.|++++|.+.+.+|... .++++.|++++|.+++. | + +.|. -++.+....|.
T Consensus 280 ~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l-~~l~---~L~~L~l~~N~ 350 (457)
T 3bz5_A 280 FQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--V-SHNT---KLKSLSCVNAH 350 (457)
T ss_dssp EE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--C-TTCT---TCSEEECCSSC
T ss_pred cc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--c-ccCC---cCcEEECCCCC
Confidence 65 4678899999999998877776432 23677889999998884 3 3 3332 34455566666
Q ss_pred CCC
Q 005361 392 LDK 394 (700)
Q Consensus 392 ~~~ 394 (700)
+..
T Consensus 351 l~~ 353 (457)
T 3bz5_A 351 IQD 353 (457)
T ss_dssp CCB
T ss_pred CCC
Confidence 654
No 60
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=2.2e-24 Score=243.71 Aligned_cols=277 Identities=17% Similarity=0.177 Sum_probs=219.9
Q ss_pred CcCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEE
Q 005361 90 ATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNL 168 (700)
Q Consensus 90 ~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L 168 (700)
.+.+++.|+|++|.+++..+..|.++++|++|+|++|.+++..+..|..++ |++|++++|.+++..|..|.++++|++|
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence 345799999999999998888999999999999999999988888899888 9999999999998888999999999999
Q ss_pred EccCCcCCCCCCccccCCCCccEEEeeecCCCC-cCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcc----cEEEcc
Q 005361 169 SIEGNLFTGSIPPDIRKLINLQKLILSSNSFTG-ELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKI----QKLHIQ 243 (700)
Q Consensus 169 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L----~~L~L~ 243 (700)
++++|.+.+..+..++++++|++|++++|.+++ .+|..+.++++|++|++++|.+++..+..+..+++| +.|+++
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 999999997666679999999999999999986 469999999999999999999998888888888888 899999
Q ss_pred CCCCCCCchhhhhcCCCCCEEEcCCCCCCCCc----------------------------------ccccCccCccEEEc
Q 005361 244 GSSLEGPIPASISALTSLTDLRISDLKGSESA----------------------------------FPKLDKMNLKTLIL 289 (700)
Q Consensus 244 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~----------------------------------~~~l~~~~L~~L~L 289 (700)
+|.+.+..+..+..+ +|+.|++++|...... +..+....++.+++
T Consensus 186 ~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 264 (570)
T 2z63_A 186 LNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264 (570)
T ss_dssp TCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred CCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence 999998777777766 7999998876322110 11111123455666
Q ss_pred ccC-CCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhhcCCCeeeeecCcccccC
Q 005361 290 TKC-LIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWES 368 (700)
Q Consensus 290 ~~n-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~ls~N~l~~~~ 368 (700)
+++ .+.+..|..+..+++|+.|++++|.++ .+|..+..+ +|+.|++++|.++ .+|...+++++.|++++|.+.+..
T Consensus 265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~ 341 (570)
T 2z63_A 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAF 341 (570)
T ss_dssp EETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBC
T ss_pred hcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCcccccc
Confidence 665 555566666666777777777777776 455556666 7777777777776 566555566677777777665554
Q ss_pred CC
Q 005361 369 SD 370 (700)
Q Consensus 369 p~ 370 (700)
+.
T Consensus 342 ~~ 343 (570)
T 2z63_A 342 SE 343 (570)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2e-25 Score=246.24 Aligned_cols=239 Identities=19% Similarity=0.172 Sum_probs=196.1
Q ss_pred CchhhcCC----CCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCcc
Q 005361 108 LPTELSKL----RYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPD 182 (700)
Q Consensus 108 ~~~~l~~l----~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 182 (700)
+|..+..+ ++|+.|+|++|.+++..|..|..++ |++|+|++|.+++..| +..+++|++|+|++|.+++. |
T Consensus 22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~-- 96 (487)
T 3oja_A 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L-- 96 (487)
T ss_dssp HHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E--
T ss_pred hHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C--
Confidence 34445444 4899999999999998888998888 9999999999987666 88999999999999998743 2
Q ss_pred ccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhh-cCCCC
Q 005361 183 IRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASIS-ALTSL 261 (700)
Q Consensus 183 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L 261 (700)
..++|+.|++++|.+++..+. .+++|+.|+|++|.+++..|..++.+++|+.|+|++|.+++..|..+. .+++|
T Consensus 97 --~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L 171 (487)
T 3oja_A 97 --VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171 (487)
T ss_dssp --ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred --CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc
Confidence 348999999999999876554 468899999999999988888899999999999999999988888876 79999
Q ss_pred CEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCC
Q 005361 262 TDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGN 340 (700)
Q Consensus 262 ~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 340 (700)
+.|+|++|.+... +.... ++|+.|+|++|.+++.+|. +..+++|+.|+|++|.|++ +|..+..+++|+.|++++|
T Consensus 172 ~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 172 EHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp CEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTC
T ss_pred cEEecCCCccccc--cccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCC
Confidence 9999999887654 33333 8999999999999976554 8888999999999999995 6777888999999999999
Q ss_pred cCC-CCCchhhhc--CCCeeeee
Q 005361 341 KLT-GPVPKYIFN--SNKNVDIS 360 (700)
Q Consensus 341 ~l~-~~ip~~~~~--~l~~L~ls 360 (700)
.+. +.+|..+.. .++.++++
T Consensus 248 ~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 248 GFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCcCcchHHHHHhCCCCcEEecc
Confidence 997 555554432 34455554
No 62
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=6.4e-24 Score=216.61 Aligned_cols=208 Identities=20% Similarity=0.242 Sum_probs=118.7
Q ss_pred CCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEe
Q 005361 116 RYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLIL 194 (700)
Q Consensus 116 ~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 194 (700)
++|++|+|++|.+++..+..+..++ |++|++++|.+++..+..|.++++|++|+|++|.+.+..+..|.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 4677888887777766555666665 666666666666555556666666666666666666555555666666666666
Q ss_pred eecCCCCcCchhhhCCCCCcEEEeecCcCCCC-ChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCC
Q 005361 195 SSNSFTGELPAELTKLTNLNDLRISDNNFSGK-IPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSE 273 (700)
Q Consensus 195 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 273 (700)
++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|+.|++++|.+++..+..+..+.+|+.|.+
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l------- 180 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL------- 180 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCE-------
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccce-------
Confidence 66666654444555666666666666666542 3555555556666666655555444444443333331110
Q ss_pred CcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCC
Q 005361 274 SAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLT 343 (700)
Q Consensus 274 ~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 343 (700)
.|++++|.+++..+..+.. .+|+.|+|++|++++..+..|..+++|+.|+|++|+++
T Consensus 181 ------------~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 181 ------------SLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp ------------EEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred ------------eeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 3445555555443333322 35666666666666544444555555555555555544
No 63
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=1.8e-23 Score=212.51 Aligned_cols=213 Identities=23% Similarity=0.319 Sum_probs=127.5
Q ss_pred CCeeeCCCCCcCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcC
Q 005361 81 SNVTCDCSSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLT 160 (700)
Q Consensus 81 ~~v~C~~~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~ 160 (700)
.++.|.|. .+++.++++++.++. +|..+. ++|+.|+|++|.+.+..+..| .
T Consensus 8 ~~~~C~c~---~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~-----------------------~ 58 (270)
T 2o6q_A 8 DGGVCSCN---NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAF-----------------------H 58 (270)
T ss_dssp GTCSBEEE---TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSS-----------------------S
T ss_pred CCCCCEeC---CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHh-----------------------c
Confidence 67778774 345678888888774 443332 456667776666665444444 4
Q ss_pred CCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEE
Q 005361 161 NITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKL 240 (700)
Q Consensus 161 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 240 (700)
++++|++|+|++|.++...+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|
T Consensus 59 ~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 138 (270)
T 2o6q_A 59 RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYL 138 (270)
T ss_dssp SCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEE
Confidence 44455555555555443333334445555555555555554444445555555556665555555555555666666666
Q ss_pred EccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCC
Q 005361 241 HIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTG 320 (700)
Q Consensus 241 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 320 (700)
+|++|.+....+..|..+++|+.|+++ +|.+++..+..|..+++|+.|+|++|++++
T Consensus 139 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~-----------------------~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 139 SLGYNELQSLPKGVFDKLTSLKELRLY-----------------------NNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECC-----------------------SSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred ECCCCcCCccCHhHccCCcccceeEec-----------------------CCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence 666666665444445555555444443 344554555556677788888888888886
Q ss_pred CChhhHhcCCCCCEEEccCCcCCCC
Q 005361 321 GIPTTFEKLAKTNFMYLTGNKLTGP 345 (700)
Q Consensus 321 ~~p~~~~~l~~L~~L~L~~N~l~~~ 345 (700)
..+..|..+++|+.|+|++|.+...
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 196 VPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CCHHHhccccCCCEEEecCCCeeCC
Confidence 6666777888888888888887643
No 64
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=3e-23 Score=210.92 Aligned_cols=213 Identities=20% Similarity=0.294 Sum_probs=166.2
Q ss_pred ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeec
Q 005361 141 LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISD 220 (700)
Q Consensus 141 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 220 (700)
.+.++++++.++ .+|..+. ++|++|+|++|.+....+..|.++++|++|++++|.++...+..|..+++|++|+|++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 566777777776 3554443 5788888888888876666788888888888888888866566678888888888888
Q ss_pred CcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCch
Q 005361 221 NNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPD 300 (700)
Q Consensus 221 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~ 300 (700)
|.++...+..+..+++|++|+|++|.++...+..|..+++|+.|+ |++|.+++..+.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-----------------------Ls~n~l~~~~~~ 151 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS-----------------------LGYNELQSLPKG 151 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE-----------------------CCSSCCCCCCTT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEE-----------------------CCCCcCCccCHh
Confidence 888877677778888888888888888776666666666555554 555677766666
Q ss_pred hhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchh-h--hcCCCeeeeecCcccccCCCCCCCCCC
Q 005361 301 YIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKY-I--FNSNKNVDISLNNFTWESSDPIECPRG 377 (700)
Q Consensus 301 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~-~--~~~l~~L~ls~N~l~~~~p~~~~C~~~ 377 (700)
.|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++ +|.. + +++++.|+|++| +|.|+|.
T Consensus 152 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N--------~~~c~c~ 222 (270)
T 2o6q_A 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQEN--------PWDCTCN 222 (270)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSS--------CBCCSSS
T ss_pred HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc-CCHHHhccccCCCEEEecCC--------CeeCCCc
Confidence 78899999999999999998888889999999999999999995 5544 3 347889999999 4559997
Q ss_pred -CccceecccCC
Q 005361 378 -SVNLVESYSSP 388 (700)
Q Consensus 378 -~~~~~~~~~~~ 388 (700)
..++..|+...
T Consensus 223 ~~~~~~~~l~~~ 234 (270)
T 2o6q_A 223 GIIYMAKWLKKK 234 (270)
T ss_dssp SSHHHHHHHHHH
T ss_pred cHHHHHHHHHhh
Confidence 55667777543
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=2.4e-23 Score=212.35 Aligned_cols=209 Identities=20% Similarity=0.211 Sum_probs=180.0
Q ss_pred cCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEE
Q 005361 91 TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLS 169 (700)
Q Consensus 91 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 169 (700)
+.+++.|++++|.+++..+..|.++++|++|+|++|.+.+..+..+..++ |++|++++|.+++..+..|.++++|++|+
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 45799999999999988888999999999999999999988888898888 99999999999988888999999999999
Q ss_pred ccCCcCCCCCCccccCCCCccEEEeeecCCCCc-CchhhhCCCCCcEEEeecCcCCCCChhhhcCCCccc----EEEccC
Q 005361 170 IEGNLFTGSIPPDIRKLINLQKLILSSNSFTGE-LPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQ----KLHIQG 244 (700)
Q Consensus 170 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~L~L~~ 244 (700)
+++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|++++..+..+..+++|+ .|++++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 999999977777899999999999999999864 689999999999999999999987777777666666 788888
Q ss_pred CCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCCh
Q 005361 245 SSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIP 323 (700)
Q Consensus 245 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 323 (700)
|.+.+..+..+. ..+|+.|+|++|++++..+..+..+++|+.|+|++|.+.+..+
T Consensus 187 n~l~~~~~~~~~------------------------~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 187 NPMNFIQPGAFK------------------------EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp SCCCEECTTSSC------------------------SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CcccccCccccC------------------------CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 877743332221 1357777888888887777778899999999999999996543
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=4.1e-25 Score=230.17 Aligned_cols=244 Identities=17% Similarity=0.138 Sum_probs=208.4
Q ss_pred cCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEE
Q 005361 91 TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLS 169 (700)
Q Consensus 91 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 169 (700)
..+++.|+|++|.+++..|..|.++++|++|+|++|.+++..+ +..++ |++|++++|.+++.. ..++|++|+
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~ 105 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH 105 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEE
Confidence 3479999999999999888999999999999999999987665 77777 999999999988433 348999999
Q ss_pred ccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhh-cCCCcccEEEccCCCCC
Q 005361 170 IEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFI-GKWKKIQKLHIQGSSLE 248 (700)
Q Consensus 170 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~ 248 (700)
+++|.+++..+. .+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++|++|+|++|.++
T Consensus 106 l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp CCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 999999865443 46889999999999998778889999999999999999998777766 47899999999999998
Q ss_pred CCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCC-CCChhhH
Q 005361 249 GPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLT-GGIPTTF 326 (700)
Q Consensus 249 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~ 326 (700)
.. + ....+++|+.|++++|.+...+.. +.. ++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+. +.+|..+
T Consensus 183 ~~-~-~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 258 (317)
T 3o53_A 183 DV-K-GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (317)
T ss_dssp EE-E-CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred cc-c-cccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHH
Confidence 54 3 234589999999999888754333 555 89999999999999 56777899999999999999999 7788899
Q ss_pred hcCCCCCEEEccCC-cCCCCCch
Q 005361 327 EKLAKTNFMYLTGN-KLTGPVPK 348 (700)
Q Consensus 327 ~~l~~L~~L~L~~N-~l~~~ip~ 348 (700)
..+++|+.|++.+| .++|..|.
T Consensus 259 ~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 259 SKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp HTCHHHHHHHHHHHHHHHSSSSC
T ss_pred hccccceEEECCCchhccCCchh
Confidence 99999999999954 56665554
No 67
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=8.9e-23 Score=222.80 Aligned_cols=245 Identities=22% Similarity=0.317 Sum_probs=143.3
Q ss_pred cEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcCCCCCCCEEEccC
Q 005361 93 HVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEG 172 (700)
Q Consensus 93 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 172 (700)
+++.|++++|.+++ +| .|.++++|++|++++|.+++ +|..+ ..|++|++++|.+++ +| .+.++++|++|++++
T Consensus 132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~--~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP--PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADN 204 (454)
T ss_dssp TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC--TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCS
T ss_pred CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc--ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCC
Confidence 45555555555554 33 35555555555555555554 22211 125555555555554 33 355555666666666
Q ss_pred CcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCch
Q 005361 173 NLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIP 252 (700)
Q Consensus 173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 252 (700)
|.+++ +|... ++|+.|++++|.++ .+|. +..+++|++|++++|++++ +|. .+++|+.|++++|.+++ +|
T Consensus 205 N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~ 273 (454)
T 1jl5_A 205 NSLKK-LPDLP---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LP 273 (454)
T ss_dssp SCCSS-CCCCC---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CC
T ss_pred CcCCc-CCCCc---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cC
Confidence 65553 33221 35566666666555 3442 5566666666666666653 232 12456666666666554 33
Q ss_pred hhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCC-CCCCEEeccCCCCCCCChhhHhcCCC
Q 005361 253 ASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDM-TKLKNIDLSFNNLTGGIPTTFEKLAK 331 (700)
Q Consensus 253 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~ 331 (700)
.. +++|+.|++++|.+... +.+ .++|+.|++++|++++. + .+ ++|+.|+|++|++++ +|.. +++
T Consensus 274 ~~---~~~L~~L~ls~N~l~~l--~~~-~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~ 338 (454)
T 1jl5_A 274 EL---PQSLTFLDVSENIFSGL--SEL-PPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL---PPR 338 (454)
T ss_dssp CC---CTTCCEEECCSSCCSEE--SCC-CTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC---CTT
T ss_pred cc---cCcCCEEECcCCccCcc--cCc-CCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc---CCc
Confidence 21 35566666666554431 111 14666677777666641 1 22 588899999998886 5533 578
Q ss_pred CCEEEccCCcCCCCCchhhhcCCCeeeeecCcccc--cCCCCC
Q 005361 332 TNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTW--ESSDPI 372 (700)
Q Consensus 332 L~~L~L~~N~l~~~ip~~~~~~l~~L~ls~N~l~~--~~p~~~ 372 (700)
|+.|++++|+++ .+|. ...+++.|++++|++++ .+|..+
T Consensus 339 L~~L~L~~N~l~-~lp~-~l~~L~~L~L~~N~l~~l~~ip~~l 379 (454)
T 1jl5_A 339 LERLIASFNHLA-EVPE-LPQNLKQLHVEYNPLREFPDIPESV 379 (454)
T ss_dssp CCEEECCSSCCS-CCCC-CCTTCCEEECCSSCCSSCCCCCTTC
T ss_pred CCEEECCCCccc-cccc-hhhhccEEECCCCCCCcCCCChHHH
Confidence 999999999988 5777 66788899999999888 677665
No 68
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=2.7e-23 Score=211.44 Aligned_cols=202 Identities=19% Similarity=0.254 Sum_probs=127.3
Q ss_pred CCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEE
Q 005361 162 ITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLH 241 (700)
Q Consensus 162 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 241 (700)
+++|+.|++++|.+.. + ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 4444444444444431 1 1244444444444444444421 2344445555555555555444444444455555555
Q ss_pred ccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCC
Q 005361 242 IQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTG 320 (700)
Q Consensus 242 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 320 (700)
|++|.+++..+..+..+++|+.|++++|.+.......+.. ++|+.|+|++|++++..+..+..+++|+.|+|++|++++
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 5555555444444455555555555554444332222333 566667777788887777788899999999999999998
Q ss_pred CChhhHhcCCCCCEEEccCCcCCCCCchhhhcCCCeeeeecCcccccCCCCC
Q 005361 321 GIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDPI 372 (700)
Q Consensus 321 ~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~ls~N~l~~~~p~~~ 372 (700)
..+..+..+++|+.|+|++|.+.+..| .++.++++.|.++|.+|..+
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~~~~~~-----~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 196 VPDGVFDRLTSLQYIWLHDNPWDCTCP-----GIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCCTT-----TTHHHHHHHHHTGGGBBCTT
T ss_pred cCHHHHhCCcCCCEEEccCCCccccCc-----HHHHHHHHHHhCCCcccCcc
Confidence 888888999999999999999987655 57788999999999999876
No 69
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=3.2e-22 Score=218.36 Aligned_cols=265 Identities=22% Similarity=0.292 Sum_probs=163.3
Q ss_pred CcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcCCCCCCCEEEcc
Q 005361 92 CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIE 171 (700)
Q Consensus 92 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 171 (700)
.+++.|++++|.+++ +|.. +++|++|++++|.+++... .. ..|++|++++|.+++ +| .|.++++|++|+++
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~-~~--~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~ 161 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSD-LP--PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVD 161 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCS-CC--TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccC-CC--CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECC
Confidence 467788888877776 4432 3677777777777765321 10 127777777777775 55 47777777777777
Q ss_pred CCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCc
Q 005361 172 GNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPI 251 (700)
Q Consensus 172 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 251 (700)
+|++++ +|..+ .+|++|++++|.+++ +| .+..+++|++|++++|.+++ +|.. .++|+.|++++|.+. .+
T Consensus 162 ~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~l 230 (454)
T 1jl5_A 162 NNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-EL 230 (454)
T ss_dssp SSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SC
T ss_pred CCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cc
Confidence 777764 44432 467777777777764 44 46677777777777777664 3322 246667777777666 44
Q ss_pred hhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCC--CChhhH---
Q 005361 252 PASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTG--GIPTTF--- 326 (700)
Q Consensus 252 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~--- 326 (700)
| .+..+++|+.|++++|.+... |.. ..+|+.|++++|++++ +|.. +++|+.|++++|++++ .+|..+
T Consensus 231 p-~~~~l~~L~~L~l~~N~l~~l--~~~-~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L 302 (454)
T 1jl5_A 231 P-ELQNLPFLTTIYADNNLLKTL--PDL-PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNLYYL 302 (454)
T ss_dssp C-CCTTCTTCCEEECCSSCCSSC--CSC-CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTCCEE
T ss_pred c-ccCCCCCCCEEECCCCcCCcc--ccc-ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCcCCcCCEE
Confidence 4 366666777777766655432 111 1455666666665553 2221 2445555555555443 222111
Q ss_pred ----------hcC-CCCCEEEccCCcCCCCCchhhhcCCCeeeeecCcccccCCCCCCCCCCCccceecccCCCCCCCC
Q 005361 327 ----------EKL-AKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDK 394 (700)
Q Consensus 327 ----------~~l-~~L~~L~L~~N~l~~~ip~~~~~~l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~~~~~~~ 394 (700)
..+ ++|+.|++++|++++ +|.. +++++.|++++|.+++ +|. + + .-++.+....|.+..
T Consensus 303 ~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~-~~~L~~L~L~~N~l~~-lp~-~-l-----~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 303 NASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL-PPRLERLIASFNHLAE-VPE-L-P-----QNLKQLHVEYNPLRE 371 (454)
T ss_dssp ECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC-CTTCCEEECCSSCCSC-CCC-C-C-----TTCCEEECCSSCCSS
T ss_pred ECcCCcCCcccCCcCcCCEEECCCCcccc-cccc-CCcCCEEECCCCcccc-ccc-h-h-----hhccEEECCCCCCCc
Confidence 122 589999999999985 6664 4789999999999984 665 2 2 335556666666665
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=4.5e-24 Score=235.36 Aligned_cols=234 Identities=16% Similarity=0.128 Sum_probs=203.1
Q ss_pred cCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEE
Q 005361 91 TCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLS 169 (700)
Q Consensus 91 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 169 (700)
..+++.|+|++|.+++..|..|..+++|++|+|++|.+++..| +..++ |++|+|++|.+++..+ .++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 4489999999999999888999999999999999999987665 77787 9999999999985433 38999999
Q ss_pred ccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhc-CCCcccEEEccCCCCC
Q 005361 170 IEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIG-KWKKIQKLHIQGSSLE 248 (700)
Q Consensus 170 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~ 248 (700)
|++|.+++..+. .+++|+.|+|++|.+++..|..+..+++|+.|+|++|.+++..|..+. .+++|+.|+|++|.++
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 999999965543 468999999999999988888999999999999999999988888776 7999999999999998
Q ss_pred CCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCC-CCChhhH
Q 005361 249 GPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLT-GGIPTTF 326 (700)
Q Consensus 249 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~ 326 (700)
+. + ....+++|+.|++++|.+...+. .+.. ++|+.|+|++|.+++ +|..+..+++|+.|+|++|.+. +.+|..+
T Consensus 183 ~~-~-~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 183 DV-K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp EE-E-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred cc-c-ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 65 2 24469999999999988876433 3555 899999999999995 6777889999999999999998 6777888
Q ss_pred hcCCCCCEEEcc
Q 005361 327 EKLAKTNFMYLT 338 (700)
Q Consensus 327 ~~l~~L~~L~L~ 338 (700)
..++.|+.+++.
T Consensus 259 ~~l~~L~~l~~~ 270 (487)
T 3oja_A 259 SKNQRVQTVAKQ 270 (487)
T ss_dssp TTCHHHHHHHHH
T ss_pred HhCCCCcEEecc
Confidence 888888877775
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=6.3e-23 Score=230.96 Aligned_cols=240 Identities=28% Similarity=0.336 Sum_probs=123.9
Q ss_pred cEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEcc
Q 005361 93 HVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIE 171 (700)
Q Consensus 93 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 171 (700)
.++.|+++++.++ .+|..+. ++|+.|+|++|.++... . .++ |++|+|++|.++. +|. .+++|++|+|+
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp-~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLP-A---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCC-C---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCC-C---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence 4666667666666 4444343 56667777766666432 2 233 6666776666663 333 45666666666
Q ss_pred CCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCc
Q 005361 172 GNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPI 251 (700)
Q Consensus 172 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 251 (700)
+|.+++ +|. .+++|+.|++++|.++. +|.. +++|++|+|++|.+++ +|. .+++|+.|++++|.++. +
T Consensus 110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l 176 (622)
T 3g06_A 110 SNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-L 176 (622)
T ss_dssp SCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C
T ss_pred CCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-C
Confidence 666663 333 44566666666666653 3332 3566666666666653 222 22344455555555443 2
Q ss_pred hhhhhcCCCCCEEEcCCCCCCCCc------------------ccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEec
Q 005361 252 PASISALTSLTDLRISDLKGSESA------------------FPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDL 313 (700)
Q Consensus 252 ~~~~~~l~~L~~L~l~~n~~~~~~------------------~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 313 (700)
| ..+++|+.|++++|.+...+ ++.. .++|+.|+|++|+|++ +| ..+++|+.|+|
T Consensus 177 ~---~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~-~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~L 248 (622)
T 3g06_A 177 P---MLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPAL-PSGLKELIVSGNRLTS-LP---VLPSELKELMV 248 (622)
T ss_dssp C---CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCC-CTTCCEEECCSSCCSC-CC---CCCTTCCEEEC
T ss_pred c---ccCCCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCCC-CCCCCEEEccCCccCc-CC---CCCCcCcEEEC
Confidence 2 23344445555444433211 1110 1455555555555553 22 23455555555
Q ss_pred cCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhh--cCCCeeeeecCcccccCC
Q 005361 314 SFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF--NSNKNVDISLNNFTWESS 369 (700)
Q Consensus 314 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~--~~l~~L~ls~N~l~~~~p 369 (700)
++|+|+. +|. .+++|+.|+|++|+|+ .+|..+. ++++.|+|++|++++.+|
T Consensus 249 s~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 249 SGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred CCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence 5555552 332 4455555555555555 4454432 245555555555555444
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=6.8e-22 Score=202.78 Aligned_cols=204 Identities=22% Similarity=0.183 Sum_probs=152.0
Q ss_pred hcCCCCCCEEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccE
Q 005361 112 LSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQK 191 (700)
Q Consensus 112 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 191 (700)
+.++++|++++++++.++..++.. . ..++.|+|++|.+++..+..|.++++|++|+|++|.+++. +. ...+++|+.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~-~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL-P-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC-C-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCC-C-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCCE
Confidence 567778888888888887543322 1 2378888888888877777888888888888888888743 32 267788888
Q ss_pred EEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCC
Q 005361 192 LILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKG 271 (700)
Q Consensus 192 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 271 (700)
|++++|.++ .+|..+..+++|++|++++|++++..+..|..+++|+.|+|++|.++...+..|..+++|+.|
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L------- 153 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL------- 153 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE-------
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE-------
Confidence 888888887 566677777888888888888876666777777888888888887776555555555555554
Q ss_pred CCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCC
Q 005361 272 SESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTG 344 (700)
Q Consensus 272 ~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 344 (700)
+|++|++++..+..|..+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|.+..
T Consensus 154 ----------------~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 154 ----------------SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp ----------------ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ----------------ECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 45556777566667788889999999999998 667777778889999999998864
No 73
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.88 E-value=1.2e-24 Score=239.08 Aligned_cols=275 Identities=19% Similarity=0.215 Sum_probs=211.0
Q ss_pred cEEEEEecCCCCCC----cCchhhcCCCCCCEEECcCCCCCCCcccccc-----ccc-ccEEEccCCCCCCC----Cchh
Q 005361 93 HVVTIALKAQNLTG----TLPTELSKLRYLKQLDLSRNCLTGSFSPQWA-----SLQ-LVELSVMGNRLSGP----FPKV 158 (700)
Q Consensus 93 ~v~~L~L~~~~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~-L~~L~L~~n~l~~~----~p~~ 158 (700)
+++.|+|++|.++. .++..+..+++|++|+|++|.+.+..+..+. ..+ |++|++++|.+++. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 68999999999884 5678889999999999999988754343332 233 99999999998864 3566
Q ss_pred cCCCCCCCEEEccCCcCCCCCCcccc-----CCCCccEEEeeecCCCCc----CchhhhCCCCCcEEEeecCcCCCCC--
Q 005361 159 LTNITTLKNLSIEGNLFTGSIPPDIR-----KLINLQKLILSSNSFTGE----LPAELTKLTNLNDLRISDNNFSGKI-- 227 (700)
Q Consensus 159 ~~~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~-- 227 (700)
+..+++|++|+|++|.+....+..+. .+++|+.|++++|.++.. ++..+..+++|++|++++|.+++..
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 67789999999999987744333333 356899999999998853 5677888899999999999887432
Q ss_pred ---hhhhcCCCcccEEEccCCCCCCC----chhhhhcCCCCCEEEcCCCCCCCCcccccC-----c-cCccEEEcccCCC
Q 005361 228 ---PEFIGKWKKIQKLHIQGSSLEGP----IPASISALTSLTDLRISDLKGSESAFPKLD-----K-MNLKTLILTKCLI 294 (700)
Q Consensus 228 ---~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~-----~-~~L~~L~L~~n~l 294 (700)
+..+..+++|+.|++++|.++.. ++..+..+++|+.|++++|.+.......+. . ++|+.|+|++|.+
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence 22334688999999999998854 577788899999999999876543322221 1 5899999999999
Q ss_pred CCC----CchhhcCCCCCCEEeccCCCCCCCChhhHhc-----CCCCCEEEccCCcCCC----CCchhh--hcCCCeeee
Q 005361 295 HGE----IPDYIGDMTKLKNIDLSFNNLTGGIPTTFEK-----LAKTNFMYLTGNKLTG----PVPKYI--FNSNKNVDI 359 (700)
Q Consensus 295 ~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~L~~N~l~~----~ip~~~--~~~l~~L~l 359 (700)
++. ++..+..+++|++|+|++|.+++..+..+.. .++|+.|+|++|++++ .+|..+ +++++.|++
T Consensus 326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l 405 (461)
T 1z7x_W 326 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 405 (461)
T ss_dssp BGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEEC
T ss_pred chHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEEC
Confidence 865 4566777899999999999988655555543 6799999999999986 666665 357899999
Q ss_pred ecCccccc
Q 005361 360 SLNNFTWE 367 (700)
Q Consensus 360 s~N~l~~~ 367 (700)
++|++++.
T Consensus 406 ~~N~i~~~ 413 (461)
T 1z7x_W 406 SNNCLGDA 413 (461)
T ss_dssp CSSSCCHH
T ss_pred CCCCCCHH
Confidence 99987743
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=2.5e-22 Score=204.25 Aligned_cols=206 Identities=22% Similarity=0.213 Sum_probs=134.6
Q ss_pred hcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCcc
Q 005361 112 LSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQ 190 (700)
Q Consensus 112 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 190 (700)
+..+++|+.|++++|.+... + .+..++ |++|++++|.+++. ..+..+++|++|+|++|.+++..+..|..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~-~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC-T-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCcccc-c-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 34566666666666665532 1 244444 66666666665542 2456666666666666666655555556666666
Q ss_pred EEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCC
Q 005361 191 KLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLK 270 (700)
Q Consensus 191 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 270 (700)
+|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..++
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~----------- 181 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT----------- 181 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----------
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCc-----------
Confidence 666666666655555556666666666666666655555555666666666666666554444444444
Q ss_pred CCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhh
Q 005361 271 GSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYI 350 (700)
Q Consensus 271 ~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~ 350 (700)
+|+.|+|++|.+++..+..+..+++|+.|+|++|.+.+. +++|+.|++..|+++|.+|.++
T Consensus 182 ------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 182 ------------QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp ------------TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTT
T ss_pred ------------cCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcc
Confidence 455556666778877777888999999999999999854 4578899999999999999876
Q ss_pred h
Q 005361 351 F 351 (700)
Q Consensus 351 ~ 351 (700)
.
T Consensus 243 ~ 243 (272)
T 3rfs_A 243 G 243 (272)
T ss_dssp S
T ss_pred c
Confidence 4
No 75
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=1.1e-21 Score=196.87 Aligned_cols=158 Identities=21% Similarity=0.274 Sum_probs=89.4
Q ss_pred CCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEcc
Q 005361 164 TLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQ 243 (700)
Q Consensus 164 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 243 (700)
+|+.|+|++|.+.+..+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|++|+|+
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence 45555555555555444455555555555555555554444455555555555555555554444555555555555555
Q ss_pred CCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCCh
Q 005361 244 GSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIP 323 (700)
Q Consensus 244 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 323 (700)
+|.+++..+..|..+++|+.| +|++|++++..+..|..+++|+.|+|++|++++..+
T Consensus 116 ~N~l~~~~~~~~~~l~~L~~L-----------------------~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 116 GNQLKSLPSGVFDRLTKLKEL-----------------------RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEE-----------------------ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CCcCCCcChhHhccCCcccEE-----------------------ECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 555554433334444333333 334455554455556666777777777777776666
Q ss_pred hhHhcCCCCCEEEccCCcCCC
Q 005361 324 TTFEKLAKTNFMYLTGNKLTG 344 (700)
Q Consensus 324 ~~~~~l~~L~~L~L~~N~l~~ 344 (700)
..|..+++|+.|+|++|++++
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBCT
T ss_pred HHHhCCCCCCEEEeeCCceeC
Confidence 666667777777776666653
No 76
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=8.6e-23 Score=214.51 Aligned_cols=252 Identities=19% Similarity=0.291 Sum_probs=175.3
Q ss_pred cEEEEEecCCCCCCcCchhhcCC--CCCCEEECcCCCCCCCcccccccccccEEEccCCCCCCC-CchhcCCCCCCCEEE
Q 005361 93 HVVTIALKAQNLTGTLPTELSKL--RYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGP-FPKVLTNITTLKNLS 169 (700)
Q Consensus 93 ~v~~L~L~~~~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~ 169 (700)
.++.++++++.+. +..+..+ ++++.|++++|.+.+..+..+....|++|++++|.+++. ++..+..+++|++|+
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 4678888888766 5566777 889999999998888776655433388888888887754 677778888888888
Q ss_pred ccCCcCCCCCCccccCCCCccEEEeeec-CCCCc-CchhhhCCCCCcEEEeecC-cCCCC-ChhhhcCCC-cccEEEccC
Q 005361 170 IEGNLFTGSIPPDIRKLINLQKLILSSN-SFTGE-LPAELTKLTNLNDLRISDN-NFSGK-IPEFIGKWK-KIQKLHIQG 244 (700)
Q Consensus 170 L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~-~L~~L~L~~ 244 (700)
|++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 8888877666677777888888888887 56642 5555677777888888777 66643 455666777 777777777
Q ss_pred C--CCC-CCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCC-CCCCCchhhcCCCCCCEEeccCCCCCC
Q 005361 245 S--SLE-GPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCL-IHGEIPDYIGDMTKLKNIDLSFNNLTG 320 (700)
Q Consensus 245 n--~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 320 (700)
| .++ ..++..+..+++|+.|++++ |. +++..+..+..+++|+.|+|++|. +
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~-----------------------~~~l~~~~~~~l~~l~~L~~L~l~~~~--~ 259 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSD-----------------------SVMLKNDCFQEFFQLNYLQHLSLSRCY--D 259 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTT-----------------------CTTCCGGGGGGGGGCTTCCEEECTTCT--T
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCC-----------------------CCcCCHHHHHHHhCCCCCCEeeCCCCC--C
Confidence 7 343 34455556666666665555 44 444455566677888888888885 2
Q ss_pred CChh---hHhcCCCCCEEEccCCcCCCCCchhhhcCCCeeeeecCcccccCCCCCC
Q 005361 321 GIPT---TFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDPIE 373 (700)
Q Consensus 321 ~~p~---~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~ls~N~l~~~~p~~~~ 373 (700)
..+. .+..+++|+.|++++| ++...-..+...+..|++++|.+++..|..+.
T Consensus 260 ~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 260 IIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred CCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHHhhCcceEEecccCccccCCccc
Confidence 2333 5677888888888888 44333233344577788888888888776663
No 77
>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*
Probab=99.87 E-value=1.1e-22 Score=190.45 Aligned_cols=159 Identities=21% Similarity=0.289 Sum_probs=112.0
Q ss_pred eeeEEeeCCccee-cCCceeecCccCC--ccccceecCCceEEeeeecccCCCCCCCcceEecccccccccccchhhhhh
Q 005361 414 YTLHINCGGAKIN-TGHTKYEADMEAR--GASMFYSSGQYWAFSSTGKFMDDDTDLDNYIRTNTSTLSKVSAVDLELYRT 490 (700)
Q Consensus 414 ~~~~~~c~~~~~~-~~~~~~~~~~~~~--g~s~~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~t 490 (700)
...++||||+... ..+.+|++|.... |.+..+. . + .. .....++|++||+|
T Consensus 6 ~~~~INcGg~~~~d~~gr~w~~D~~~~~~g~~~~~~-----------~----~----~~-------~~~~~~~~~~lY~T 59 (174)
T 2jwp_A 6 VIWAVNAGGESHVDVHGIHYRKDPLEGRVGRASDYG-----------M----K----LP-------ILRSNPEDQVLYQT 59 (174)
T ss_dssp EEEEEEETSSSEEETTTEEECSSCSSTTCCCCCCCC-----------T----T----SC-------CSSSCHHHHHTTTC
T ss_pred EEEEEECCCCCccCCCCCEEcCCcCcccCCcccccc-----------c----c----eE-------ecccCCCCchhhhh
Confidence 3578999997763 4677898885421 2111100 0 0 00 00113778999999
Q ss_pred hccCCccceEEEeeecCcceEEEEEeEEEEecCCCccccCCeEEEEEEecceecccccccchhcCCcCccEEEeeEEEec
Q 005361 491 ARVSPLSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQEKLVKKDFNIEDEAGGTGIPIVKNFPAEVT 570 (700)
Q Consensus 491 ar~~~~~lt~~~~~~~~~~y~vrlhF~ei~~~~~~~~~~~~~rvF~iyI~~~~~~~~~di~~~~~~~~~p~~~df~v~~~ 570 (700)
||.++.++||.++|+++|.|+|||||||+.+. +.++|+||||||+++++++|||..++|+ ..|++++|.+.++
T Consensus 60 aR~~~~~~tY~f~v~~~G~Y~VrLhF~ei~~~------~~~~rvFdV~ing~~~l~~fdi~~~ag~-~~~~~~~~~~~v~ 132 (174)
T 2jwp_A 60 ERYNEDSFGYDIPIKEEGEYVLVLKFAEVYFA------QSQQKVFDVRVNGHTVVKDLDIFDRVGH-STAHDEIIPISIK 132 (174)
T ss_dssp CCCCCSCEEEEEECCSCEEEEEEEEEECCSCC------CSSSSCEEEEETTEEEEEEECHHHHHSS-SSCEEEEEEEEEE
T ss_pred hccCCCCeEEEEEeCCCeEEEEEEEEeccccC------CCCCeEeEEEECCEEeecCcCHHHhhCC-CeeEEEEEEEEEe
Confidence 99999999999999999999999999999543 6899999999999999999999999977 7899999999886
Q ss_pred CCccEEEEEEc-cCcccccCC-C-CCCCCccccccccc
Q 005361 571 SHTLKIHLYWA-GRGTTGIPL-R-GTYGPLISAISVKS 605 (700)
Q Consensus 571 ~~~~~i~~~~~-~~~~~~~~~-~-~~~gp~i~~~~~~~ 605 (700)
++.+.++..|. +.+...+.. + ..++|.++++++.+
T Consensus 133 ~~~l~i~~~~~~~~g~L~I~f~p~~~~~a~inaIEI~~ 170 (174)
T 2jwp_A 133 KGKLSVQGEVSTFTGKLSVEFVKGYYDNPKVCALFIMK 170 (174)
T ss_dssp TTEEEETTEEEECCSEEEEEEECSSSCSSSEEEEEEES
T ss_pred cCceeeeeeecccCCeEEEEEeccCCCCcEEEEEEEEe
Confidence 66554443332 111111111 1 13467777777643
No 78
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=1.7e-21 Score=202.21 Aligned_cols=198 Identities=19% Similarity=0.223 Sum_probs=93.1
Q ss_pred ccEEEccCCCCCCCCchhc--CCCCCCCEEEccCCcCCCCCC----ccccCCCCccEEEeeecCCCCcCchhhhCCCCCc
Q 005361 141 LVELSVMGNRLSGPFPKVL--TNITTLKNLSIEGNLFTGSIP----PDIRKLINLQKLILSSNSFTGELPAELTKLTNLN 214 (700)
Q Consensus 141 L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 214 (700)
|++|++++|.+++..|..+ ..+++|++|+|++|.+.+..+ ..+..+++|++|+|++|.+.+..+..+..+++|+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 172 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT 172 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence 5555555555555555444 455555555555555554333 2223445555555555555544444455555555
Q ss_pred EEEeecCcCCCC--Ch--hhhcCCCcccEEEccCCCCCCCchh----hhhcCCCCCEEEcCCCCCCCCcccccCccCccE
Q 005361 215 DLRISDNNFSGK--IP--EFIGKWKKIQKLHIQGSSLEGPIPA----SISALTSLTDLRISDLKGSESAFPKLDKMNLKT 286 (700)
Q Consensus 215 ~L~L~~n~l~~~--~~--~~l~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~ 286 (700)
+|+|++|++.+. ++ ..+..+++|++|+|++|.++. ++. .+..+++ |++
T Consensus 173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~-----------------------L~~ 228 (310)
T 4glp_A 173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQ-----------------------PHS 228 (310)
T ss_dssp EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCC-----------------------CSS
T ss_pred EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCC-----------------------CCE
Confidence 555555554321 11 112344455555555555541 222 1234444 445
Q ss_pred EEcccCCCCCCCchhhcCC---CCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhhcCCCeeeeecCc
Q 005361 287 LILTKCLIHGEIPDYIGDM---TKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNN 363 (700)
Q Consensus 287 L~L~~n~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~ls~N~ 363 (700)
|+|++|++++..|..+..+ ++|++|+|++|+|+ .+|..+. ++|+.|+|++|++++......+++++.|+|++|+
T Consensus 229 L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 229 LDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp EECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTT
T ss_pred EECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECcCCC
Confidence 5555555554444443333 45555555555555 3343332 4555555555555542111222445555555555
Q ss_pred cc
Q 005361 364 FT 365 (700)
Q Consensus 364 l~ 365 (700)
++
T Consensus 306 l~ 307 (310)
T 4glp_A 306 FL 307 (310)
T ss_dssp TS
T ss_pred CC
Confidence 43
No 79
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=4.1e-23 Score=219.25 Aligned_cols=257 Identities=18% Similarity=0.242 Sum_probs=182.0
Q ss_pred EEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCcc----ccccccc--ccEEEccCCCCCCCCchhcCCC-----CC
Q 005361 96 TIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFS----PQWASLQ--LVELSVMGNRLSGPFPKVLTNI-----TT 164 (700)
Q Consensus 96 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~~~~l~--L~~L~L~~n~l~~~~p~~~~~l-----~~ 164 (700)
.++++.+++++.+|..+...++|++|+|++|.+++..+ ..+..++ |++|+|++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35678888888888777777779999999999887766 5565554 8889999998887767666654 88
Q ss_pred CCEEEccCCcCCCCCCccc----cCC-CCccEEEeeecCCCCcCchhhh----C-CCCCcEEEeecCcCCCCC----hhh
Q 005361 165 LKNLSIEGNLFTGSIPPDI----RKL-INLQKLILSSNSFTGELPAELT----K-LTNLNDLRISDNNFSGKI----PEF 230 (700)
Q Consensus 165 L~~L~L~~n~l~~~~p~~~----~~l-~~L~~L~L~~n~l~~~~~~~~~----~-l~~L~~L~L~~n~l~~~~----~~~ 230 (700)
|++|+|++|.+++..+..+ ..+ ++|+.|+|++|.++...+..+. . .++|++|+|++|.+++.. +..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999998886655543 344 7889999998888766554433 3 358888999888887543 334
Q ss_pred hcCCC-cccEEEccCCCCCCCchhhhh----cC-CCCCEEEcCCCCCCCCcccc----cCc--cCccEEEcccCCCCCCC
Q 005361 231 IGKWK-KIQKLHIQGSSLEGPIPASIS----AL-TSLTDLRISDLKGSESAFPK----LDK--MNLKTLILTKCLIHGEI 298 (700)
Q Consensus 231 l~~l~-~L~~L~L~~n~l~~~~~~~~~----~l-~~L~~L~l~~n~~~~~~~~~----l~~--~~L~~L~L~~n~l~~~~ 298 (700)
+..++ +|++|+|++|.+++..+..+. .+ ++|+.|++++|.+....... +.. ++|++|+|++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 45555 888888888888776665443 34 58888888887766543322 222 47888888888887654
Q ss_pred c----hhhcCCCCCCEEeccCCCCCCCChh-------hHhcCCCCCEEEccCCcCCCCCchhhhc
Q 005361 299 P----DYIGDMTKLKNIDLSFNNLTGGIPT-------TFEKLAKTNFMYLTGNKLTGPVPKYIFN 352 (700)
Q Consensus 299 p----~~~~~l~~L~~L~Ls~N~l~~~~p~-------~~~~l~~L~~L~L~~N~l~~~ip~~~~~ 352 (700)
+ ..+..+++|+.|+|++|.+.+..+. .+..+++|+.|++++|++.+..+..+..
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~~ 306 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISN 306 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHHH
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHHH
Confidence 4 2345667888888888876644433 3456677888888888887665555443
No 80
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.86 E-value=2.2e-23 Score=229.03 Aligned_cols=203 Identities=18% Similarity=0.252 Sum_probs=83.5
Q ss_pred ccEEEccCCCCCC----CCchhcCCCCCCCEEEccCCcCCCCCCcccc-----CCCCccEEEeeecCCCCc----Cchhh
Q 005361 141 LVELSVMGNRLSG----PFPKVLTNITTLKNLSIEGNLFTGSIPPDIR-----KLINLQKLILSSNSFTGE----LPAEL 207 (700)
Q Consensus 141 L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~L~~n~l~~~----~~~~~ 207 (700)
|++|++++|.++. .++..+..+++|++|+|++|.+....+..+. ..++|++|++++|.++.. ++..+
T Consensus 87 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 166 (461)
T 1z7x_W 87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 166 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred eeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHH
Confidence 4444444444442 2344444444444444444444321111111 123444455544444432 12333
Q ss_pred hCCCCCcEEEeecCcCCCCChhhhc-----CCCcccEEEccCCCCCCC----chhhhhcCCCCCEEEcCCCCCCCCccc-
Q 005361 208 TKLTNLNDLRISDNNFSGKIPEFIG-----KWKKIQKLHIQGSSLEGP----IPASISALTSLTDLRISDLKGSESAFP- 277 (700)
Q Consensus 208 ~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~- 277 (700)
..+++|++|++++|.++...+..+. ..++|+.|++++|.++.. ++..+..+++|+.|++++|.+......
T Consensus 167 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 246 (461)
T 1z7x_W 167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAE 246 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH
T ss_pred hhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHH
Confidence 3444555555554444322222221 133455555555544432 233444445555555554443322111
Q ss_pred ---cc-Cc-cCccEEEcccCCCCCC----CchhhcCCCCCCEEeccCCCCCCCChhhHhc-----CCCCCEEEccCCcCC
Q 005361 278 ---KL-DK-MNLKTLILTKCLIHGE----IPDYIGDMTKLKNIDLSFNNLTGGIPTTFEK-----LAKTNFMYLTGNKLT 343 (700)
Q Consensus 278 ---~l-~~-~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~L~~N~l~ 343 (700)
.+ .. ++|++|+|++|.++.. ++..+..+++|++|+|++|.+++..+..+.. .++|+.|+|++|.++
T Consensus 247 l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 326 (461)
T 1z7x_W 247 LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT 326 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred HHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCc
Confidence 11 11 4455555555544432 3333444455555555555444322222221 134555555555544
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=2.3e-21 Score=193.10 Aligned_cols=195 Identities=16% Similarity=0.155 Sum_probs=101.2
Q ss_pred CCCEEECcCCCCCCCccccccccc-ccEEEccCCC-CCCCCchhcCCCCCCCEEEccC-CcCCCCCCccccCCCCccEEE
Q 005361 117 YLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNR-LSGPFPKVLTNITTLKNLSIEG-NLFTGSIPPDIRKLINLQKLI 193 (700)
Q Consensus 117 ~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~ 193 (700)
+|++|+|++|.+++..+..|..++ |++|++++|. ++...+..|.++++|++|+|++ |.++...+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 667777777766655554555554 5555555554 5444444555555555555555 555544444455555555555
Q ss_pred eeecCCCCcCchhhhCCCCCc---EEEeecC-cCCCCChhhhcCCCccc-EEEccCCCCCCCchhhhhcCCCCCEEEcCC
Q 005361 194 LSSNSFTGELPAELTKLTNLN---DLRISDN-NFSGKIPEFIGKWKKIQ-KLHIQGSSLEGPIPASISALTSLTDLRISD 268 (700)
Q Consensus 194 L~~n~l~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 268 (700)
+++|.+++ +|. +..+++|+ +|++++| .++...+..|..+++|+ .|++++|.++ .+|.
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~--------------- 173 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQG--------------- 173 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECT---------------
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCH---------------
Confidence 55555553 333 44444444 5555554 44433333344444444 4444444443 1111
Q ss_pred CCCCCCcccccCccCccEEEcccCC-CCCCCchhhcCC-CCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCC
Q 005361 269 LKGSESAFPKLDKMNLKTLILTKCL-IHGEIPDYIGDM-TKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGN 340 (700)
Q Consensus 269 n~~~~~~~~~l~~~~L~~L~L~~n~-l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 340 (700)
..+...+|+.|+|++|+ +++..+..|..+ ++|+.|+|++|++++..+. .+++|+.|+++++
T Consensus 174 --------~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 174 --------YAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp --------TTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred --------hhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 11112355555666663 665555566666 6666677766666643332 4556666666554
No 82
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=1.4e-20 Score=211.82 Aligned_cols=227 Identities=28% Similarity=0.347 Sum_probs=156.0
Q ss_pred CcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEc
Q 005361 92 CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSI 170 (700)
Q Consensus 92 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 170 (700)
.+++.|+|++|.++. +|. .+++|++|+|++|.++... . .++ |++|++++|.+++. |. .+++|++|+|
T Consensus 61 ~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp-~---~l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLP-V---LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSCCC-C---CCTTCCEEEECSCCCCCC-CC---CCTTCCEEEC
T ss_pred CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCcCC-C---CCCCCCEEECcCCcCCCC-CC---CCCCcCEEEC
Confidence 467778888777774 333 4677777777777776433 2 334 77777777777643 33 4556666666
Q ss_pred cCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhh-----------------hCCCCCcEEEeecCcCCCCChhhhcC
Q 005361 171 EGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAEL-----------------TKLTNLNDLRISDNNFSGKIPEFIGK 233 (700)
Q Consensus 171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~-----------------~~l~~L~~L~L~~n~l~~~~~~~l~~ 233 (700)
++|+++. +|.. +++|++|++++|.+++ +|..+ ..+++|+.|++++|.+++ +|. .
T Consensus 129 ~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~---~ 199 (622)
T 3g06_A 129 FGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPT---L 199 (622)
T ss_dssp CSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC---C
T ss_pred CCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCC---c
Confidence 6666663 3432 3566666666666653 22211 223666666666666663 332 2
Q ss_pred CCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEec
Q 005361 234 WKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDL 313 (700)
Q Consensus 234 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 313 (700)
+++|+.|++++|.++. +|. .+++|+.|++++|.+...+ -..++|+.|+|++|.|+. +|. .+++|+.|+|
T Consensus 200 ~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~L 268 (622)
T 3g06_A 200 PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSV 268 (622)
T ss_dssp CTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred cchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeC
Confidence 3567777777777663 332 2478999999998877633 122799999999999994 554 6789999999
Q ss_pred cCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhh
Q 005361 314 SFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF 351 (700)
Q Consensus 314 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~ 351 (700)
++|+|+ .+|..+..+++|+.|+|++|++++.+|..+.
T Consensus 269 s~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 269 YRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp CSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred CCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 999999 7788999999999999999999988877653
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=1.3e-22 Score=217.55 Aligned_cols=241 Identities=20% Similarity=0.271 Sum_probs=152.6
Q ss_pred cCchhhcCCCCCCEEECcCCCCCCCcc----ccccccc-ccEEEccCCC---CCCCCchhc-------CCCCCCCEEEcc
Q 005361 107 TLPTELSKLRYLKQLDLSRNCLTGSFS----PQWASLQ-LVELSVMGNR---LSGPFPKVL-------TNITTLKNLSIE 171 (700)
Q Consensus 107 ~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~~~~l~-L~~L~L~~n~---l~~~~p~~~-------~~l~~L~~L~L~ 171 (700)
.++..+..+++|++|+|++|.+....+ ..+..++ |++|+|++|. +++.+|..+ ..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 355667788888888888888876533 3355566 8888888753 444455544 677888888888
Q ss_pred CCcCCC----CCCccccCCCCccEEEeeecCCCCcCchh----hhCC---------CCCcEEEeecCcCC-CCCh---hh
Q 005361 172 GNLFTG----SIPPDIRKLINLQKLILSSNSFTGELPAE----LTKL---------TNLNDLRISDNNFS-GKIP---EF 230 (700)
Q Consensus 172 ~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l---------~~L~~L~L~~n~l~-~~~~---~~ 230 (700)
+|.+.. .+|..+..+++|++|+|++|.++...+.. +..+ ++|++|+|++|+++ ..++ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 888775 35566777788888888888776433332 3333 77888888887776 3334 35
Q ss_pred hcCCCcccEEEccCCCCCC-----CchhhhhcCCCCCEEEcCCCCCCC---Cccc-ccCc-cCccEEEcccCCCCCC---
Q 005361 231 IGKWKKIQKLHIQGSSLEG-----PIPASISALTSLTDLRISDLKGSE---SAFP-KLDK-MNLKTLILTKCLIHGE--- 297 (700)
Q Consensus 231 l~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~~~~---~~~~-~l~~-~~L~~L~L~~n~l~~~--- 297 (700)
+..+++|+.|+|++|.+.. ..+..+..+++|+.|+|++|.+.. ..++ .+.. ++|+.|+|++|.+++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 5667777778877777762 233356677777777777765432 1111 1333 5666666666666543
Q ss_pred -Cchhhc--CCCCCCEEeccCCCCCC----CChhhH-hcCCCCCEEEccCCcCCCCCc
Q 005361 298 -IPDYIG--DMTKLKNIDLSFNNLTG----GIPTTF-EKLAKTNFMYLTGNKLTGPVP 347 (700)
Q Consensus 298 -~p~~~~--~l~~L~~L~Ls~N~l~~----~~p~~~-~~l~~L~~L~L~~N~l~~~ip 347 (700)
++..+. .+++|+.|+|++|.+++ .+|..+ .++++|+.|+|++|++++..+
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 344442 26666666666666665 255554 446666666666666665543
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=1.1e-21 Score=203.54 Aligned_cols=228 Identities=18% Similarity=0.192 Sum_probs=165.9
Q ss_pred ccccccccEEEccCCCCCCCCch---hcCCCCCCCEEEccCCcCCCCCCccc--cCCCCccEEEeeecCCCCcCc----h
Q 005361 135 QWASLQLVELSVMGNRLSGPFPK---VLTNITTLKNLSIEGNLFTGSIPPDI--RKLINLQKLILSSNSFTGELP----A 205 (700)
Q Consensus 135 ~~~~l~L~~L~L~~n~l~~~~p~---~~~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~~----~ 205 (700)
.+....++.|.+.++.++...-. .+..+++|++|+|++|.+.+..|..+ ..+++|++|+|++|.+++..+ .
T Consensus 60 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~ 139 (310)
T 4glp_A 60 TVKALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAEL 139 (310)
T ss_dssp GGSSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHH
T ss_pred HhhhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHH
Confidence 34444577788877776521111 12235679999999999998888887 889999999999999986544 3
Q ss_pred hhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCC--chh--hhhcCCCCCEEEcCCCCCCCCcccccCc
Q 005361 206 ELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGP--IPA--SISALTSLTDLRISDLKGSESAFPKLDK 281 (700)
Q Consensus 206 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~--~~~~l~~L~~L~l~~n~~~~~~~~~l~~ 281 (700)
.+..+++|++|+|++|.+.+..+..+..+++|++|+|++|.+.+. ++. .+..++
T Consensus 140 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~---------------------- 197 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFP---------------------- 197 (310)
T ss_dssp HTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSC----------------------
T ss_pred HhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCC----------------------
Confidence 455788899999999988877778888888888888888887542 111 123344
Q ss_pred cCccEEEcccCCCCCCCch----hhcCCCCCCEEeccCCCCCCCChhhHhcC---CCCCEEEccCCcCCCCCchhhhcCC
Q 005361 282 MNLKTLILTKCLIHGEIPD----YIGDMTKLKNIDLSFNNLTGGIPTTFEKL---AKTNFMYLTGNKLTGPVPKYIFNSN 354 (700)
Q Consensus 282 ~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~L~~N~l~~~ip~~~~~~l 354 (700)
+|++|+|++|+++. ++. .+..+++|++|+|++|++++..|..+..+ ++|+.|+|++|+++ .+|..+++++
T Consensus 198 -~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~L 274 (310)
T 4glp_A 198 -AIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLPAKL 274 (310)
T ss_dssp -CCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCCSCC
T ss_pred -CCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhcCCC
Confidence 45555566677652 232 35788999999999999998878777776 79999999999999 7898888899
Q ss_pred CeeeeecCcccccCCCCCCCCCCCccceecccCCCCCCC
Q 005361 355 KNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLD 393 (700)
Q Consensus 355 ~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~~~~~~ 393 (700)
+.|+|++|++++. |....+ .-++.+....|.+.
T Consensus 275 ~~L~Ls~N~l~~~-~~~~~l-----~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 275 RVLDLSSNRLNRA-PQPDEL-----PEVDNLTLDGNPFL 307 (310)
T ss_dssp SCEECCSCCCCSC-CCTTSC-----CCCSCEECSSTTTS
T ss_pred CEEECCCCcCCCC-chhhhC-----CCccEEECcCCCCC
Confidence 9999999999974 322212 33445555555554
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=2.4e-21 Score=192.98 Aligned_cols=196 Identities=15% Similarity=0.141 Sum_probs=158.9
Q ss_pred cccEEEccCCCCCCCCchhcCCCCCCCEEEccCCc-CCCCCCccccCCCCccEEEeee-cCCCCcCchhhhCCCCCcEEE
Q 005361 140 QLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNL-FTGSIPPDIRKLINLQKLILSS-NSFTGELPAELTKLTNLNDLR 217 (700)
Q Consensus 140 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~ 217 (700)
.|++|++++|++++..+..|.++++|++|+|++|+ ++...+..|.++++|++|++++ |.++...+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 48999999999997777788999999999999997 8766666888999999999998 899876667888899999999
Q ss_pred eecCcCCCCChhhhcCCCccc---EEEccCC-CCCCCchhhhhcCCCCC-EEEcCCCCCCCCcccccCccCccEEEcccC
Q 005361 218 ISDNNFSGKIPEFIGKWKKIQ---KLHIQGS-SLEGPIPASISALTSLT-DLRISDLKGSESAFPKLDKMNLKTLILTKC 292 (700)
Q Consensus 218 L~~n~l~~~~~~~l~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n 292 (700)
+++|.+++ +|. +..+++|+ .|++++| .++...+..|..+++|+ . |++++|
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~-----------------------L~l~~n 166 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLT-----------------------LKLYNN 166 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEE-----------------------EECCSC
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeE-----------------------EEcCCC
Confidence 99999885 555 77777777 8888888 77755555566555555 4 455557
Q ss_pred CCCCCCchhhcCCCCCCEEeccCCC-CCCCChhhHhcC-CCCCEEEccCCcCCCCCchhhhcCCCeeeeecC
Q 005361 293 LIHGEIPDYIGDMTKLKNIDLSFNN-LTGGIPTTFEKL-AKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLN 362 (700)
Q Consensus 293 ~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l-~~L~~L~L~~N~l~~~ip~~~~~~l~~L~ls~N 362 (700)
+++...+..+.. ++|+.|+|++|+ +++..+..|..+ ++|+.|++++|+++ .+|...+.+++.|+++++
T Consensus 167 ~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 167 GFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNT 236 (239)
T ss_dssp CCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCTTCTTCSEEECTTC
T ss_pred CCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChhHhccCceeeccCc
Confidence 777444445555 899999999995 997778889999 99999999999998 677777889999999876
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=1e-22 Score=218.37 Aligned_cols=237 Identities=17% Similarity=0.174 Sum_probs=191.3
Q ss_pred ccccccccc-ccEEEccCCCCCCCCc----hhcCCCCCCCEEEccCCcCC---CCCCccc-------cCCCCccEEEeee
Q 005361 132 FSPQWASLQ-LVELSVMGNRLSGPFP----KVLTNITTLKNLSIEGNLFT---GSIPPDI-------RKLINLQKLILSS 196 (700)
Q Consensus 132 ~~~~~~~l~-L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~L~~n~l~---~~~p~~~-------~~l~~L~~L~L~~ 196 (700)
++..+..++ |++|+|++|.++...+ ..+..+++|++|+|++|.+. +.+|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 445556666 9999999999986533 44778999999999997544 4455554 6889999999999
Q ss_pred cCCCC----cCchhhhCCCCCcEEEeecCcCCCCChhhh----cCC---------CcccEEEccCCCCC-CCch---hhh
Q 005361 197 NSFTG----ELPAELTKLTNLNDLRISDNNFSGKIPEFI----GKW---------KKIQKLHIQGSSLE-GPIP---ASI 255 (700)
Q Consensus 197 n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l----~~l---------~~L~~L~L~~n~l~-~~~~---~~~ 255 (700)
|.+.. .++..+..+++|++|+|++|.++...+..+ ..+ ++|+.|+|++|.+. ..++ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 99997 477788999999999999999974433333 334 89999999999997 3445 467
Q ss_pred hcCCCCCEEEcCCCCCCCCc----cc-ccCc-cCccEEEcccCCCC----CCCchhhcCCCCCCEEeccCCCCCCC----
Q 005361 256 SALTSLTDLRISDLKGSESA----FP-KLDK-MNLKTLILTKCLIH----GEIPDYIGDMTKLKNIDLSFNNLTGG---- 321 (700)
Q Consensus 256 ~~l~~L~~L~l~~n~~~~~~----~~-~l~~-~~L~~L~L~~n~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~---- 321 (700)
..+++|+.|++++|.+.... .+ .+.. ++|+.|+|++|.++ ..+|..+..+++|+.|+|++|.+++.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 88999999999998876432 33 4445 89999999999996 56788889999999999999999865
Q ss_pred ChhhHhc--CCCCCEEEccCCcCCC----CCchhh---hcCCCeeeeecCcccccC
Q 005361 322 IPTTFEK--LAKTNFMYLTGNKLTG----PVPKYI---FNSNKNVDISLNNFTWES 368 (700)
Q Consensus 322 ~p~~~~~--l~~L~~L~L~~N~l~~----~ip~~~---~~~l~~L~ls~N~l~~~~ 368 (700)
++..+.. +++|+.|+|++|++++ .+|..+ +++++.|++++|++++..
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 4666644 8999999999999997 488877 468999999999887543
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=2.2e-20 Score=193.34 Aligned_cols=194 Identities=23% Similarity=0.330 Sum_probs=120.6
Q ss_pred hcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCcc
Q 005361 112 LSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQ 190 (700)
Q Consensus 112 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 190 (700)
+.++++|++|++++|.+... + .+..++ |++|++++|.+++..+ +..+++|++|+|++|.+.+ + ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-c-hhhcCCCCCC
Confidence 34567777777777777643 2 345555 7777777776664433 6666677777777766663 2 2466666666
Q ss_pred EEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCC
Q 005361 191 KLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLK 270 (700)
Q Consensus 191 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 270 (700)
.|++++|.+++. + .+..+++|++|++++|.+++..+ +..+++|+.|++++|.+++..+ +..++
T Consensus 111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~----------- 173 (308)
T 1h6u_A 111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLS----------- 173 (308)
T ss_dssp EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCT-----------
T ss_pred EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCC-----------
Confidence 666666666642 2 25666666666666666654332 5556666666666666553222 44444
Q ss_pred CCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCC
Q 005361 271 GSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTG 344 (700)
Q Consensus 271 ~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 344 (700)
+|+.|+|++|.+++..+ +..+++|+.|+|++|++++..+ +..+++|+.|+|++|++++
T Consensus 174 ------------~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 174 ------------KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp ------------TCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred ------------CCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 44555555566654333 6677788888888888875443 6778888888888888763
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=1.8e-20 Score=188.07 Aligned_cols=182 Identities=20% Similarity=0.278 Sum_probs=146.4
Q ss_pred CCeeeCCCCCcCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhc
Q 005361 81 SNVTCDCSSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVL 159 (700)
Q Consensus 81 ~~v~C~~~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~ 159 (700)
.|++|. ...+.++++++.++. +|..+. ++|+.|+|++|.+.+..+..+..++ |++|+|++|.+++..+..|
T Consensus 8 ~gC~C~-----~~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 79 (251)
T 3m19_A 8 TGCTCN-----EGKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF 79 (251)
T ss_dssp HSSEEE-----GGGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred CceEcC-----CCCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHh
Confidence 466773 235678889888874 444443 6899999999999988888888887 9999999999988888888
Q ss_pred CCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccE
Q 005361 160 TNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQK 239 (700)
Q Consensus 160 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 239 (700)
.++++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|+.
T Consensus 80 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 159 (251)
T 3m19_A 80 DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQT 159 (251)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCE
Confidence 88899999999999988777777888889999999999888666667788888888888888888777777888888888
Q ss_pred EEccCCCCCCCchhhhhcCCCCCEEEcCCCC
Q 005361 240 LHIQGSSLEGPIPASISALTSLTDLRISDLK 270 (700)
Q Consensus 240 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 270 (700)
|+|++|.+++..+..+..+++|+.|++++|.
T Consensus 160 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred EECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 8888888887766677777777777666543
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=7.2e-22 Score=209.67 Aligned_cols=248 Identities=16% Similarity=0.164 Sum_probs=195.1
Q ss_pred EEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCc----hhcCCCC-CCCEEEccCCcCCCCCCccccCC-----CC
Q 005361 120 QLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFP----KVLTNIT-TLKNLSIEGNLFTGSIPPDIRKL-----IN 188 (700)
Q Consensus 120 ~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p----~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l-----~~ 188 (700)
.+.|+.|.+++.+|..+...+ |++|+|++|.+++..+ ..+..++ +|++|+|++|.+.+..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 468899999999998888888 9999999999997777 7788898 89999999999997777777765 99
Q ss_pred ccEEEeeecCCCCcCchh----hhCC-CCCcEEEeecCcCCCCChhhh----cC-CCcccEEEccCCCCCCCc----hhh
Q 005361 189 LQKLILSSNSFTGELPAE----LTKL-TNLNDLRISDNNFSGKIPEFI----GK-WKKIQKLHIQGSSLEGPI----PAS 254 (700)
Q Consensus 189 L~~L~L~~n~l~~~~~~~----~~~l-~~L~~L~L~~n~l~~~~~~~l----~~-l~~L~~L~L~~n~l~~~~----~~~ 254 (700)
|++|+|++|.+++..+.. +..+ ++|++|+|++|.+++..+..+ .. .++|++|+|++|.+.... +..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999998766654 4445 899999999999987766554 33 369999999999998643 344
Q ss_pred hhcCC-CCCEEEcCCCCCCCCcccc----cCc--cCccEEEcccCCCCCC----CchhhcC-CCCCCEEeccCCCCCCCC
Q 005361 255 ISALT-SLTDLRISDLKGSESAFPK----LDK--MNLKTLILTKCLIHGE----IPDYIGD-MTKLKNIDLSFNNLTGGI 322 (700)
Q Consensus 255 ~~~l~-~L~~L~l~~n~~~~~~~~~----l~~--~~L~~L~L~~n~l~~~----~p~~~~~-l~~L~~L~Ls~N~l~~~~ 322 (700)
+..++ +|+.|++++|.+....... +.. .+|+.|+|++|.+++. ++..+.. .++|+.|+|++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 55665 9999999998876655432 222 4899999999999863 4445554 469999999999999766
Q ss_pred hhh----HhcCCCCCEEEccCCcCCCCCchhh---------hcCCCeeeeecCccccc
Q 005361 323 PTT----FEKLAKTNFMYLTGNKLTGPVPKYI---------FNSNKNVDISLNNFTWE 367 (700)
Q Consensus 323 p~~----~~~l~~L~~L~L~~N~l~~~ip~~~---------~~~l~~L~ls~N~l~~~ 367 (700)
+.. +..+++|+.|+|++|.+.+..+..+ .+.++.||+++|++...
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 643 4667899999999999764443322 12467899999987754
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=8e-20 Score=189.17 Aligned_cols=189 Identities=17% Similarity=0.292 Sum_probs=118.1
Q ss_pred ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeec
Q 005361 141 LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISD 220 (700)
Q Consensus 141 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 220 (700)
|++|++++|.++. ++ .+..+++|++|+|++|.+.+. +. +..+++|++|++++|.+++. + .+..+++|++|++++
T Consensus 43 L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 43 ITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLTS 116 (308)
T ss_dssp CCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECTT
T ss_pred cCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECCC
Confidence 5555555555542 22 345555555555555555532 22 55555555555555555432 2 344555555555555
Q ss_pred CcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCch
Q 005361 221 NNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPD 300 (700)
Q Consensus 221 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~ 300 (700)
|.+++. +. +..+++|+.|++++|.+++..+ +..+ ++|+.|+|++|.+++..+
T Consensus 117 n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l-----------------------~~L~~L~l~~n~l~~~~~- 168 (308)
T 1h6u_A 117 TQITDV-TP-LAGLSNLQVLYLDLNQITNISP--LAGL-----------------------TNLQYLSIGNAQVSDLTP- 168 (308)
T ss_dssp SCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGC-----------------------TTCCEEECCSSCCCCCGG-
T ss_pred CCCCCc-hh-hcCCCCCCEEECCCCccCcCcc--ccCC-----------------------CCccEEEccCCcCCCChh-
Confidence 555432 21 4445555555555555443222 3333 566666677777775443
Q ss_pred hhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhhcCCCeeeeecCcccc
Q 005361 301 YIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTW 366 (700)
Q Consensus 301 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~ls~N~l~~ 366 (700)
+..+++|+.|+|++|++++..+ +..+++|+.|+|++|++++..+-.-+++++.|++++|++++
T Consensus 169 -l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 169 -LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp -GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEEC
T ss_pred -hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeeec
Confidence 8899999999999999996544 88999999999999999976654445689999999998874
No 91
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=8.5e-20 Score=202.96 Aligned_cols=216 Identities=20% Similarity=0.265 Sum_probs=136.7
Q ss_pred CCCEEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeee
Q 005361 117 YLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSS 196 (700)
Q Consensus 117 ~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 196 (700)
+|+.|+|++|.+++ +|..+. ..|++|+|++|.++ .+| ..+++|++|+|++|++++ +|. +.. +|+.|+|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~-~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP-PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC-TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhHc-CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 78899999999887 444332 23888888888888 555 456788888888888885 666 554 888888888
Q ss_pred cCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcc
Q 005361 197 NSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAF 276 (700)
Q Consensus 197 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 276 (700)
|.+++ +|. .+++|+.|+|++|.+++ +|. .+++|+.|+|++|.+++ +|. +. ++|+.|+
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~----------- 186 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALD----------- 186 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEE-----------
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEE-----------
Confidence 88875 554 57788888888888875 444 46677788888777775 444 33 4455554
Q ss_pred cccCccCccEEEcccCCCCCCCchhhcCCCCC-------CEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchh
Q 005361 277 PKLDKMNLKTLILTKCLIHGEIPDYIGDMTKL-------KNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKY 349 (700)
Q Consensus 277 ~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L-------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~ 349 (700)
|++|+|+ .+|. +.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..
T Consensus 187 ------------Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 187 ------------VSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp ------------CCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred ------------CcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 5555555 3333 322 44 77777777777 45666666777777777777777776665
Q ss_pred hhc--C-------CCeeeeecCcccccCCCCCCCCCCCccceec
Q 005361 350 IFN--S-------NKNVDISLNNFTWESSDPIECPRGSVNLVES 384 (700)
Q Consensus 350 ~~~--~-------l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~ 384 (700)
+.. . ...+++++|.+.. +|.+ .|+|...|+.++
T Consensus 250 l~~l~~~~~~~~~~~~~~l~~~~~~~-~~~p-~~~~~~~Wl~~~ 291 (571)
T 3cvr_A 250 LSQQTAQPDYHGPRIYFSMSDGQQNT-LHRP-LADAVTAWFPEN 291 (571)
T ss_dssp HHHHHHSCC---CEEECCC-----------C-CSHHHHTTCC--
T ss_pred HHHhhcCccccCCeeEEeeccccccc-cccc-chhhHHHHhhhh
Confidence 532 0 1134555554432 2334 588877776554
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.81 E-value=3.7e-21 Score=202.00 Aligned_cols=234 Identities=18% Similarity=0.221 Sum_probs=186.7
Q ss_pred CcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCC-ccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEE
Q 005361 92 CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGS-FSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLS 169 (700)
Q Consensus 92 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 169 (700)
.+++.|+++++.+.+..+. +..+++|++|+|++|.+.+. ++..+..++ |++|++++|.+++..+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 5789999999999887665 66899999999999998865 777888888 99999999999988889999999999999
Q ss_pred ccCC-cCCC-CCCccccCCCCccEEEeeec-CCCCc-CchhhhCCC-CCcEEEeecC--cCC-CCChhhhcCCCcccEEE
Q 005361 170 IEGN-LFTG-SIPPDIRKLINLQKLILSSN-SFTGE-LPAELTKLT-NLNDLRISDN--NFS-GKIPEFIGKWKKIQKLH 241 (700)
Q Consensus 170 L~~n-~l~~-~~p~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~L~~n--~l~-~~~~~~l~~l~~L~~L~ 241 (700)
|++| .+++ .++..+..+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.++..+..+++|+.|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 9999 6764 25666888999999999999 88854 577788999 9999999999 555 45677788899999999
Q ss_pred ccCCC-CCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCC
Q 005361 242 IQGSS-LEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTG 320 (700)
Q Consensus 242 L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 320 (700)
+++|. +++..+..+..+++|+.|++++|. .+.......+..+++|+.|+|++| +..
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~----------------------~~~~~~~~~l~~~~~L~~L~l~~~-i~~ 285 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCY----------------------DIIPETLLELGEIPTLKTLQVFGI-VPD 285 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCT----------------------TCCGGGGGGGGGCTTCCEEECTTS-SCT
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCC----------------------CCCHHHHHHHhcCCCCCEEeccCc-cCH
Confidence 99999 776777788888888888887753 111111124567888999999988 543
Q ss_pred CChhhHhcCCCCCEEEccCCcCCCCCchhhh
Q 005361 321 GIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF 351 (700)
Q Consensus 321 ~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~ 351 (700)
..-..+. ..|..|++++|++++..|..+.
T Consensus 286 ~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 286 GTLQLLK--EALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp TCHHHHH--HHSTTSEESCCCSCCTTCSSCS
T ss_pred HHHHHHH--hhCcceEEecccCccccCCccc
Confidence 3322232 2366666899999988887654
No 93
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=7.8e-20 Score=179.40 Aligned_cols=165 Identities=19% Similarity=0.245 Sum_probs=80.2
Q ss_pred CccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcC
Q 005361 188 NLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRIS 267 (700)
Q Consensus 188 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 267 (700)
+|+.|+|++|.+++..+..|..+++|+.|+|++|.+++..|..|..+++|++|+|++|.++...+..|..+++|+.
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~---- 108 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL---- 108 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCE----
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCE----
Confidence 4444444444444333334444444444444444444444444444444444444444444322222232322222
Q ss_pred CCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCc
Q 005361 268 DLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVP 347 (700)
Q Consensus 268 ~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip 347 (700)
|+|++|++++..|..|..+++|+.|+|++|+|++..+..|..+++|+
T Consensus 109 -------------------L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-------------- 155 (220)
T 2v9t_B 109 -------------------LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ-------------- 155 (220)
T ss_dssp -------------------EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC--------------
T ss_pred -------------------EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCC--------------
Confidence 22233344444444455555555555555555554444455444444
Q ss_pred hhhhcCCCeeeeecCcccccCCCCCCCCCCCccceecccCCCCCCCCcccccccCCCCCCCCCCcc
Q 005361 348 KYIFNSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPADQYH 413 (700)
Q Consensus 348 ~~~~~~l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~ 413 (700)
.|+|++|++ .|+|...|+.+|+...... .....|..|...++
T Consensus 156 --------~L~L~~N~~--------~c~c~l~~l~~~l~~~~~~--------~~~~~C~~P~~l~g 197 (220)
T 2v9t_B 156 --------TMHLAQNPF--------ICDCHLKWLADYLHTNPIE--------TSGARCTSPRRLAN 197 (220)
T ss_dssp --------EEECCSSCE--------ECSGGGHHHHHHHHHCCCB--------CSCCBEEESGGGTT
T ss_pred --------EEEeCCCCc--------CCCCccHHHHHHHHhCCCC--------ccCCCcCCchHHcC
Confidence 455555533 3999999998887644211 13456776655544
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=2e-19 Score=189.85 Aligned_cols=237 Identities=14% Similarity=0.093 Sum_probs=140.5
Q ss_pred EEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCc-hhcCCCCCCCE-EEccC
Q 005361 96 TIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFP-KVLTNITTLKN-LSIEG 172 (700)
Q Consensus 96 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p-~~~~~l~~L~~-L~L~~ 172 (700)
.++.++++++ .+|..+ .+++++|+|++|+|+.+.+.+|..++ |++|+|++|.+.+.+| ..|.++++|++ +.+..
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 4566677777 345444 35778888888887766556666666 7777777776654443 34566666554 44455
Q ss_pred CcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeec-CcCCCCChhhhcCCC-cccEEEccCCCCCCC
Q 005361 173 NLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISD-NNFSGKIPEFIGKWK-KIQKLHIQGSSLEGP 250 (700)
Q Consensus 173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~ 250 (700)
|++....|..|..+++|++|++++|.++...+..+....++..|++.+ +.+....+..|..+. .++.|+|++|.++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-- 167 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-- 167 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC--
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc--
Confidence 666655556666666666666666666654444455555566666644 344433333344332 3555555555554
Q ss_pred chhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEccc-CCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcC
Q 005361 251 IPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTK-CLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKL 329 (700)
Q Consensus 251 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 329 (700)
......+...+|++|++.+ |.++...++.|..+++|+.|||++|+|+...+..|
T Consensus 168 ----------------------~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~--- 222 (350)
T 4ay9_X 168 ----------------------EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL--- 222 (350)
T ss_dssp ----------------------EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---
T ss_pred ----------------------CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---
Confidence 2222222234566667754 56665555678888999999999999985555444
Q ss_pred CCCCEEEccCCcCCCCCch-hhhcCCCeeeeecC
Q 005361 330 AKTNFMYLTGNKLTGPVPK-YIFNSNKNVDISLN 362 (700)
Q Consensus 330 ~~L~~L~L~~N~l~~~ip~-~~~~~l~~L~ls~N 362 (700)
.+|+.|.+.++.--..+|. .-+.+|+.++++++
T Consensus 223 ~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 223 ENLKKLRARSTYNLKKLPTLEKLVALMEASLTYP 256 (350)
T ss_dssp TTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCH
T ss_pred ccchHhhhccCCCcCcCCCchhCcChhhCcCCCC
Confidence 4555665544433335664 22457778887654
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=4.2e-19 Score=172.70 Aligned_cols=157 Identities=21% Similarity=0.196 Sum_probs=76.4
Q ss_pred CCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEcc
Q 005361 164 TLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQ 243 (700)
Q Consensus 164 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 243 (700)
+|++|+|++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|++|+|+
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 55555555555554444444555555555555555554433444555555555555555554444444455555555555
Q ss_pred CCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCCh
Q 005361 244 GSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIP 323 (700)
Q Consensus 244 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 323 (700)
+|.+++..+..+..+++|+.| +|++|.+++..+..+..+++|+.|+|++|.+.+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L-----------------------~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--- 162 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDL-----------------------RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--- 162 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEE-----------------------ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred CCcCcccCHhHhccCCcCCEE-----------------------ECCCCccceeCHHHhccCCCccEEEecCCCeec---
Confidence 555443333333333333332 233344443333444555555555555555543
Q ss_pred hhHhcCCCCCEEEccCCcCCCCCchhh
Q 005361 324 TTFEKLAKTNFMYLTGNKLTGPVPKYI 350 (700)
Q Consensus 324 ~~~~~l~~L~~L~L~~N~l~~~ip~~~ 350 (700)
.+++|+.|+++.|+++|.+|..+
T Consensus 163 ----~~~~l~~L~~~~n~~~g~ip~~~ 185 (208)
T 2o6s_A 163 ----TCPGIRYLSEWINKHSGVVRNSA 185 (208)
T ss_dssp ----CTTTTHHHHHHHHHCTTTBBCTT
T ss_pred ----CCCCHHHHHHHHHhCCceeeccC
Confidence 22345555555555555555443
No 96
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=2e-19 Score=176.41 Aligned_cols=182 Identities=20% Similarity=0.201 Sum_probs=95.2
Q ss_pred EEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCc-hhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCC
Q 005361 167 NLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELP-AELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGS 245 (700)
Q Consensus 167 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 245 (700)
.+++++|.++ .+|..+. ..++.|+|++|.+++..+ ..|..+++|++|+|++|.+++..+..|..+++|++|+|++|
T Consensus 15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 4444444444 2333221 233455555555543322 23445555555555555555444444555555555555555
Q ss_pred CCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhh
Q 005361 246 SLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTT 325 (700)
Q Consensus 246 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 325 (700)
.+++..+..|..+++|+.|+ |++|+|++..|..|..+++|+.|+|++|+|++..|..
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~-----------------------Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 148 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLM-----------------------LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA 148 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEE-----------------------CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTT
T ss_pred ccCccCHhHhcCCcCCCEEE-----------------------CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHH
Confidence 55544444444444333333 3334444445555666666666666666666666666
Q ss_pred HhcCCCCCEEEccCCcCCCCCchhhhcCCCeeeeecCcccccCCCCCCCCCCCccceecccCCCCCCCCcccccccCCCC
Q 005361 326 FEKLAKTNFMYLTGNKLTGPVPKYIFNSNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPC 405 (700)
Q Consensus 326 ~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 405 (700)
|..+++|+.|+|++|.++ |+|...|+.+|+..... ...+..|
T Consensus 149 ~~~l~~L~~L~L~~N~l~------------------------------c~c~l~~l~~~~~~~~~--------~~~~~~C 190 (220)
T 2v70_A 149 FDTLHSLSTLNLLANPFN------------------------------CNCYLAWLGEWLRKKRI--------VTGNPRC 190 (220)
T ss_dssp TTTCTTCCEEECCSCCEE------------------------------CSGGGHHHHHHHHHSCC--------BCCCCEE
T ss_pred hcCCCCCCEEEecCcCCc------------------------------CCCchHHHHHHHHhcCc--------cccCCcc
Confidence 666666665555555444 88988888888764321 1234466
Q ss_pred CCCCCCc
Q 005361 406 SAPADQY 412 (700)
Q Consensus 406 ~~p~~~~ 412 (700)
..|...+
T Consensus 191 ~~P~~l~ 197 (220)
T 2v70_A 191 QKPYFLK 197 (220)
T ss_dssp EESGGGT
T ss_pred CCChHHC
Confidence 6665444
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=1e-18 Score=169.90 Aligned_cols=163 Identities=21% Similarity=0.249 Sum_probs=90.3
Q ss_pred CCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEE
Q 005361 115 LRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLI 193 (700)
Q Consensus 115 l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 193 (700)
.++|++|+|++|.+++..+..+..++ |++|++++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 35777788877777765555555555 66666666666654444455566666666666665544444455555555555
Q ss_pred eeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCC
Q 005361 194 LSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSE 273 (700)
Q Consensus 194 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 273 (700)
+++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~---------------------- 164 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC---------------------- 164 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT----------------------
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC----------------------
Confidence 5555555444444455555555555555555443334444444444444444333211
Q ss_pred CcccccCccCccEEEcccCCCCCCCchhhcCCCC
Q 005361 274 SAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTK 307 (700)
Q Consensus 274 ~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~ 307 (700)
++|+.|+++.|+++|.+|..++.++.
T Consensus 165 --------~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 165 --------PGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp --------TTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred --------CCHHHHHHHHHhCCceeeccCccccC
Confidence 24555566666777777766655443
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=5.3e-19 Score=186.57 Aligned_cols=222 Identities=17% Similarity=0.105 Sum_probs=136.1
Q ss_pred EEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCC-ccccCCCCccE-EEeeec
Q 005361 120 QLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIP-PDIRKLINLQK-LILSSN 197 (700)
Q Consensus 120 ~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~-L~L~~n 197 (700)
+++.++++++.+ |..+ ...+++|+|++|+|+.+.+..|.++++|++|+|++|++.+.+| ..|.++++|+. +.+..|
T Consensus 13 ~v~C~~~~Lt~i-P~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 13 VFLCQESKVTEI-PSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp EEEEESTTCCSC-CTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred EEEecCCCCCcc-CcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 455556666533 3222 0126666666666664444456666666666666666544333 24555555543 344455
Q ss_pred CCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccC-CCCCCCchhhhhcCCCCCEEEcCCCCCCCCcc
Q 005361 198 SFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQG-SSLEGPIPASISALTSLTDLRISDLKGSESAF 276 (700)
Q Consensus 198 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 276 (700)
+++...+..|..+++|++|++++|.++...+..+....++..|++.+ +.+. ....
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~------------------------~l~~ 146 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH------------------------TIER 146 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC------------------------EECT
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc------------------------cccc
Confidence 56555555556666666666666665544444444444455555533 2222 2122
Q ss_pred cccCc--cCccEEEcccCCCCCCCchhhcCCCCCCEEeccC-CCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhhcC
Q 005361 277 PKLDK--MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSF-NNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNS 353 (700)
Q Consensus 277 ~~l~~--~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~ 353 (700)
..+.. ..++.|+|++|+|+...+..| ...+|+.|++++ |.++...+..|..+++|+.|+|++|+|+ .+|...+.+
T Consensus 147 ~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~~~~ 224 (350)
T 4ay9_X 147 NSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLEN 224 (350)
T ss_dssp TSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSSSCTT
T ss_pred cchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChhhhcc
Confidence 22222 467889999999995555544 457899999985 6777555668899999999999999999 788888888
Q ss_pred CCeeeeecCcccccCC
Q 005361 354 NKNVDISLNNFTWESS 369 (700)
Q Consensus 354 l~~L~ls~N~l~~~~p 369 (700)
++.|.+.++.-...+|
T Consensus 225 L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 225 LKKLRARSTYNLKKLP 240 (350)
T ss_dssp CCEEECTTCTTCCCCC
T ss_pred chHhhhccCCCcCcCC
Confidence 9988887775444555
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=1.3e-18 Score=193.41 Aligned_cols=203 Identities=25% Similarity=0.343 Sum_probs=161.9
Q ss_pred CCe-eeCCCCCcCcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchh
Q 005361 81 SNV-TCDCSSATCHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKV 158 (700)
Q Consensus 81 ~~v-~C~~~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~ 158 (700)
.++ .|.+ .+++.|+|++|.+++ +|..+ +++|++|+|++|.++. +| ..++ |++|++++|.+++ +|.
T Consensus 51 ~~l~~C~~----~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~- 117 (571)
T 3cvr_A 51 SLLKECLI----NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE- 117 (571)
T ss_dssp HHHHHHHH----TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-
T ss_pred hhcccccc----CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-
Confidence 455 5654 379999999999997 66555 4899999999999994 55 3455 9999999999997 666
Q ss_pred cCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCccc
Q 005361 159 LTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQ 238 (700)
Q Consensus 159 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 238 (700)
+.+ +|++|+|++|.+++ +|. .+++|+.|+|++|.+++ +|. .+++|+.|+|++|.+++ +|. +. ++|+
T Consensus 118 l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~ 183 (571)
T 3cvr_A 118 LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLE 183 (571)
T ss_dssp CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCC
T ss_pred hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCC
Confidence 665 99999999999996 666 68999999999999996 565 67899999999999996 666 55 8999
Q ss_pred EEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCC
Q 005361 239 KLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNL 318 (700)
Q Consensus 239 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 318 (700)
.|+|++|.++ .+|. +.. +| .. ....|+.|+|++|.|+ .+|..+..+++|+.|+|++|.|
T Consensus 184 ~L~Ls~N~L~-~lp~-~~~--~L-----~~-----------~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 184 ALDVSTNLLE-SLPA-VPV--RN-----HH-----------SEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp EEECCSSCCS-SCCC-CC--------------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSC
T ss_pred EEECcCCCCC-chhh-HHH--hh-----hc-----------ccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcC
Confidence 9999999998 4554 332 22 00 0135688889999998 5677777799999999999999
Q ss_pred CCCChhhHhcCCC
Q 005361 319 TGGIPTTFEKLAK 331 (700)
Q Consensus 319 ~~~~p~~~~~l~~ 331 (700)
++.+|..+..++.
T Consensus 243 ~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 243 SSRIRESLSQQTA 255 (571)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CCcCHHHHHHhhc
Confidence 9999988877643
No 100
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=5.7e-19 Score=187.13 Aligned_cols=84 Identities=18% Similarity=0.174 Sum_probs=36.8
Q ss_pred CCEEEccCCcCCCCCCcccc-CCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEcc
Q 005361 165 LKNLSIEGNLFTGSIPPDIR-KLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQ 243 (700)
Q Consensus 165 L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 243 (700)
|+.|+|++|++++..+..|. ++++|+.|+|++|.+++..+..|..+++|++|+|++|+++...+..|..+++|+.|+|+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 44444444444433333333 44444444444444443333444444444444444444443333334444444444444
Q ss_pred CCCCC
Q 005361 244 GSSLE 248 (700)
Q Consensus 244 ~n~l~ 248 (700)
+|.+.
T Consensus 121 ~N~i~ 125 (361)
T 2xot_A 121 NNHIV 125 (361)
T ss_dssp SSCCC
T ss_pred CCccc
Confidence 44443
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=1.3e-17 Score=170.86 Aligned_cols=169 Identities=22% Similarity=0.349 Sum_probs=87.2
Q ss_pred CCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEE
Q 005361 161 NITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKL 240 (700)
Q Consensus 161 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 240 (700)
.+++|++|++++|.+... + .+..+++|+.|++++|.+++..+ +..+++|++|++++|.+++ ++ .+..+++|+.|
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEE
Confidence 345555555555555422 2 24555555555555555553322 5555556666665555553 22 25555566666
Q ss_pred EccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCC
Q 005361 241 HIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLT 319 (700)
Q Consensus 241 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 319 (700)
++++|.+.+. ..+..+++|+.|++++|.+... +.+.. ++|+.|+|++|.+++..+ +..+++|+.|+|++|+++
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 6666655532 2345555555555554433322 22222 344444555555554333 555666666666666665
Q ss_pred CCChhhHhcCCCCCEEEccCCcCC
Q 005361 320 GGIPTTFEKLAKTNFMYLTGNKLT 343 (700)
Q Consensus 320 ~~~p~~~~~l~~L~~L~L~~N~l~ 343 (700)
+ ++ .+..+++|+.|++++|+++
T Consensus 192 ~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 192 D-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp B-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred C-Ch-hhccCCCCCEEECcCCccc
Confidence 3 23 2555666666666666555
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=1.6e-17 Score=163.93 Aligned_cols=133 Identities=24% Similarity=0.303 Sum_probs=64.4
Q ss_pred CCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEc
Q 005361 187 INLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRI 266 (700)
Q Consensus 187 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 266 (700)
++|+.|+|++|.+++..+..|..+++|++|+|++|.++...+..|..+++|+.|+|++|.+++..+..|..+++|+.|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 34444444444444433444444444444444444444333333444444444444444444333333333333333332
Q ss_pred CCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCC
Q 005361 267 SDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLT 343 (700)
Q Consensus 267 ~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 343 (700)
++|+|+ .+|..+..+++|+.|+|++|+|++..+..|..+++|+.|+|++|.+.
T Consensus 120 -----------------------s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 120 -----------------------CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp -----------------------CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred -----------------------cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 223333 33444555666666666666666555555666666666666666555
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=8.2e-18 Score=189.10 Aligned_cols=170 Identities=23% Similarity=0.347 Sum_probs=94.9
Q ss_pred CCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEE
Q 005361 161 NITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKL 240 (700)
Q Consensus 161 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 240 (700)
.+++|+.|+|++|.+.. ++ .+..+++|+.|+|++|.+++..+ +..+++|+.|+|++|.+++ ++ .+..+++|+.|
T Consensus 41 ~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSL 114 (605)
T ss_dssp HHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEE
T ss_pred cCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEE
Confidence 34445555555555442 22 34445555555555555543322 4455555555555555543 12 34455555555
Q ss_pred EccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCC
Q 005361 241 HIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLT 319 (700)
Q Consensus 241 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 319 (700)
+|++|.+.+. ..+..+++|+.|+|++|.+... +.+.. ++|+.|+|++|.|++..| +..+++|+.|+|++|+|+
T Consensus 115 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 115 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp ECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 5555555532 2355555555555555544433 33333 566666666777775555 677778888888888877
Q ss_pred CCChhhHhcCCCCCEEEccCCcCCC
Q 005361 320 GGIPTTFEKLAKTNFMYLTGNKLTG 344 (700)
Q Consensus 320 ~~~p~~~~~l~~L~~L~L~~N~l~~ 344 (700)
+. + .+..+++|+.|+|++|++++
T Consensus 189 ~l-~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 189 DL-R-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp BC-G-GGTTCTTCSEEECCSEEEEC
T ss_pred CC-h-HHccCCCCCEEEccCCcCcC
Confidence 53 3 57777888888888887764
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1.7e-17 Score=186.41 Aligned_cols=147 Identities=22% Similarity=0.365 Sum_probs=81.3
Q ss_pred cCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccE
Q 005361 113 SKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQK 191 (700)
Q Consensus 113 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 191 (700)
..|++|+.|++++|.+... + .+..++ |+.|+|++|.+++..+ +..+++|++|+|++|.+.+ +| .+..+++|+.
T Consensus 40 ~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCE
Confidence 4555666666666665543 2 244444 6666666666654433 5556666666666666553 22 4555666666
Q ss_pred EEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCC
Q 005361 192 LILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKG 271 (700)
Q Consensus 192 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 271 (700)
|+|++|.+++. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.+
T Consensus 114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp EECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 66666666532 2355566666666666666543 345556666666666666654433 55555555555554433
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=3.6e-17 Score=161.46 Aligned_cols=136 Identities=23% Similarity=0.272 Sum_probs=114.7
Q ss_pred CCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEe
Q 005361 116 RYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLIL 194 (700)
Q Consensus 116 ~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 194 (700)
++|++|+|++|.+.+..+..+..++ |++|+|++|.++...+..|..+++|++|+|++|++++..+..|..+++|+.|+|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 7899999999999988888888887 999999999888666677888899999999999888766667888889999999
Q ss_pred eecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCch
Q 005361 195 SSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIP 252 (700)
Q Consensus 195 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 252 (700)
++|.++ .+|..+..+++|++|+|++|++++..+..+..+++|+.|+|++|.+.+..+
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 999888 677788888889999999888887777778888888888888888876543
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=162.21 Aligned_cols=155 Identities=17% Similarity=0.230 Sum_probs=127.6
Q ss_pred EEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCcc-ccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccC
Q 005361 95 VTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFS-PQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEG 172 (700)
Q Consensus 95 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 172 (700)
+.++++++.++. +|..+ .+.+++|+|++|.+++..+ ..|..++ |++|+|++|.+++..+..|.++++|++|+|++
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 378889998875 45544 3457899999999987754 4577777 99999999998877777888899999999999
Q ss_pred CcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCch
Q 005361 173 NLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIP 252 (700)
Q Consensus 173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 252 (700)
|.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..|..+..+++|+.|+|++|.+.+..+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 99887777778888999999999998888778888888889999999888888778888888888888888888876443
No 107
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.72 E-value=1.6e-18 Score=196.57 Aligned_cols=273 Identities=13% Similarity=0.079 Sum_probs=182.9
Q ss_pred cEEEEEecCCCCCC----cCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEcc--------------------
Q 005361 93 HVVTIALKAQNLTG----TLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVM-------------------- 147 (700)
Q Consensus 93 ~v~~L~L~~~~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~-------------------- 147 (700)
+++.|+++++.+++ .++..+.++++|++|+|++|.+.+ ++..+..++ |++|+++
T Consensus 193 ~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~ 271 (592)
T 3ogk_B 193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRK 271 (592)
T ss_dssp CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTT
T ss_pred CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhcccc
Confidence 45555665555542 223334456666666666665543 233333333 4444443
Q ss_pred -------CCCCCCCCchhcCCCCCCCEEEccCCcCCCCCC-ccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEee
Q 005361 148 -------GNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIP-PDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRIS 219 (700)
Q Consensus 148 -------~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 219 (700)
++. ...+|..+..+++|++|+|++|.+++... ..+..+++|+.|+++++.....++..+..+++|++|+++
T Consensus 272 L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 272 LCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp CCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred ccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEee
Confidence 221 22456667778899999999999763322 335789999999999432223344455778999999999
Q ss_pred c-----------CcCCCC-ChhhhcCCCcccEEEccCCCCCCCchhhhhc-CCCCCEEEcC----CCCCCCCc----ccc
Q 005361 220 D-----------NNFSGK-IPEFIGKWKKIQKLHIQGSSLEGPIPASISA-LTSLTDLRIS----DLKGSESA----FPK 278 (700)
Q Consensus 220 ~-----------n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~----~n~~~~~~----~~~ 278 (700)
+ |.+++. ++.....+++|++|+++.|.+++..+..+.. +++|+.|+++ .+.+...+ ++.
T Consensus 351 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~ 430 (592)
T 3ogk_B 351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS 430 (592)
T ss_dssp CCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH
T ss_pred cCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH
Confidence 3 556533 2333456899999999999998777777765 9999999996 34444432 222
Q ss_pred -cCc-cCccEEEcccCC--CCCCCchhh-cCCCCCCEEeccCCCCCC-CChhhHhcCCCCCEEEccCCcCCCCCchhh--
Q 005361 279 -LDK-MNLKTLILTKCL--IHGEIPDYI-GDMTKLKNIDLSFNNLTG-GIPTTFEKLAKTNFMYLTGNKLTGPVPKYI-- 350 (700)
Q Consensus 279 -l~~-~~L~~L~L~~n~--l~~~~p~~~-~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~-- 350 (700)
+.. ++|+.|+|+.|. +++..+..+ ..+++|+.|+|++|++++ .++..+..+++|+.|+|++|.+++.....+
T Consensus 431 ~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 510 (592)
T 3ogk_B 431 LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVT 510 (592)
T ss_dssp HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHH
T ss_pred HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHH
Confidence 333 789999997543 665444444 358999999999999985 345566889999999999999875533333
Q ss_pred -hcCCCeeeeecCccccc
Q 005361 351 -FNSNKNVDISLNNFTWE 367 (700)
Q Consensus 351 -~~~l~~L~ls~N~l~~~ 367 (700)
+++++.|+|++|+++..
T Consensus 511 ~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 511 KLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HCSSCCEEEEESCBCCTT
T ss_pred hcCccCeeECcCCcCCHH
Confidence 46899999999998755
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=2.7e-17 Score=168.56 Aligned_cols=171 Identities=20% Similarity=0.354 Sum_probs=95.8
Q ss_pred cCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccE
Q 005361 113 SKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQK 191 (700)
Q Consensus 113 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 191 (700)
..+++|+.|++++|.+... + .+..++ |++|++++|.+++..+ +..+++|++|+|++|.+.+ + ..+..+++|+.
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCE
Confidence 4455666666666665543 2 234444 5556666655554333 5566666666666666553 2 23555566666
Q ss_pred EEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCC
Q 005361 192 LILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKG 271 (700)
Q Consensus 192 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 271 (700)
|++++|.+++. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++..+ +..+++|
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L---------- 180 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKL---------- 180 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTC----------
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCcc----------
Confidence 66666655532 3455556666666666665543 345555556666666665554332 4444444
Q ss_pred CCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCC
Q 005361 272 SESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTG 320 (700)
Q Consensus 272 ~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 320 (700)
+.|+|++|.+++ ++ .+..+++|+.|+|++|+++.
T Consensus 181 -------------~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 181 -------------QNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -------------CEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred -------------CEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 444455555553 23 36677888888888888774
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.72 E-value=3.3e-17 Score=160.60 Aligned_cols=152 Identities=21% Similarity=0.306 Sum_probs=117.7
Q ss_pred EEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCC
Q 005361 95 VTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGN 173 (700)
Q Consensus 95 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 173 (700)
+.++++++.++. +|..+. ++|+.|+|++|.+++..+..|..++ |++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 356777777774 444333 6888999999888877777777777 888888888888777888888888888888888
Q ss_pred cCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCC
Q 005361 174 LFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEG 249 (700)
Q Consensus 174 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 249 (700)
.++...+..|..+++|+.|+|++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|+.|+|++|.+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 8885555567778888888888888887777778888888888888888887777777777788888888877654
No 110
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=7.9e-19 Score=202.33 Aligned_cols=262 Identities=21% Similarity=0.222 Sum_probs=79.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCCC------CCCCCCCCCCcccCCCCCCCCCCeeeCCCCCcCcEEEEEecCCCCCCc
Q 005361 34 NKLHAEEVKALKQIGRKLGKKDWNFG------VDPCSQKGNWELSSDDKKGFESNVTCDCSSATCHVVTIALKAQNLTGT 107 (700)
Q Consensus 34 ~~~~~~e~~al~~l~~~~~~~~w~~~------~d~C~~~~~w~~~~~~~~~~~~~v~C~~~~~~~~v~~L~L~~~~l~~~ 107 (700)
+.+...+++++.++..+.+...|... ..++ ..| .+..+ ..++++.|+|..+.+...
T Consensus 127 ~s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----------~~~~~----s~~~~~~l~L~~n~~~~~ 188 (727)
T 4b8c_D 127 KSLVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPS---GTA-----------TNSAV----STPLTPKIELFANGKDEA 188 (727)
T ss_dssp -----CCCHHHHHHHHHHHHHHTTC-------------------------------------------------------
T ss_pred hhccccchhhhhhhhhhcccccCcccCCCcCCCCcc---ccC-----------CCcee----cCCccceEEeeCCCCCcc
Confidence 44667788899999888755444322 1111 134 33443 246799999998887753
Q ss_pred CchhhcCCCCCCEEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCC
Q 005361 108 LPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLI 187 (700)
Q Consensus 108 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 187 (700)
+.. .|+.++|+.|.+.+ +++..|.+. ..+..+..++.|+.|+|++|.+. .+|..+..++
T Consensus 189 -~~~-----~l~~l~Ls~~~i~~-------------~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~ 247 (727)
T 4b8c_D 189 -NQA-----LLQHKKLSQYSIDE-------------DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYD 247 (727)
T ss_dssp -----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCC
T ss_pred -hhh-----HhhcCccCcccccC-------------cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCC
Confidence 332 24444455444432 222333333 33444444444444444444444 3444444444
Q ss_pred CccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcC
Q 005361 188 NLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRIS 267 (700)
Q Consensus 188 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 267 (700)
+|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..|..+++|+.|+|+
T Consensus 248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence 4444444444444 44444444444555555444444 33444444444555555444444 334444444444444444
Q ss_pred CCCCCCCcccccCc--cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCC--------CCCCCChhhHhcCCCCCEEEc
Q 005361 268 DLKGSESAFPKLDK--MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFN--------NLTGGIPTTFEKLAKTNFMYL 337 (700)
Q Consensus 268 ~n~~~~~~~~~l~~--~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N--------~l~~~~p~~~~~l~~L~~L~L 337 (700)
+|.+.......+.. ..+..|+|++|.+++.+|. .|+.|+++.| .|.+..+..+..+..+....+
T Consensus 325 ~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~l 398 (727)
T 4b8c_D 325 GNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVL 398 (727)
T ss_dssp TSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C--------------------------------------
T ss_pred CCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeee
Confidence 43333221111111 1222356777777766664 3455566666 233333333444444555555
Q ss_pred cCCcCC
Q 005361 338 TGNKLT 343 (700)
Q Consensus 338 ~~N~l~ 343 (700)
+.|.+.
T Consensus 399 s~Nil~ 404 (727)
T 4b8c_D 399 SYNTLC 404 (727)
T ss_dssp ---CCC
T ss_pred eccccc
Confidence 555553
No 111
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.71 E-value=1.2e-18 Score=197.61 Aligned_cols=173 Identities=16% Similarity=0.102 Sum_probs=105.0
Q ss_pred cEEEEEecCCC-CCC-cCchhhcCCCCCCEEECcCCCCCCC----ccccccccc-ccEEEccCCCCCC----CCchhcCC
Q 005361 93 HVVTIALKAQN-LTG-TLPTELSKLRYLKQLDLSRNCLTGS----FSPQWASLQ-LVELSVMGNRLSG----PFPKVLTN 161 (700)
Q Consensus 93 ~v~~L~L~~~~-l~~-~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~-L~~L~L~~n~l~~----~~p~~~~~ 161 (700)
+++.|+|+++. ++. .++.....+++|++|+|++|.+++. ++.....++ |++|++++|.+++ .++..+.+
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~ 218 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence 48999998775 211 1223345788999999999987655 333445556 8899999888873 34444567
Q ss_pred CCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCC---CcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCccc
Q 005361 162 ITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFT---GELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQ 238 (700)
Q Consensus 162 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 238 (700)
+++|++|+|++|.+.+ ++..+..+++|+.|+++..... ...+..+..+++|+.|+++++.. ..+|..+..+++|+
T Consensus 219 ~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~ 296 (592)
T 3ogk_B 219 CRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIR 296 (592)
T ss_dssp CTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCC
T ss_pred CCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCc
Confidence 8889999998888774 5666777777888877643222 12223344555555555555322 24445555555566
Q ss_pred EEEccCCCCCCCch-hhhhcCCCCCEEEcC
Q 005361 239 KLHIQGSSLEGPIP-ASISALTSLTDLRIS 267 (700)
Q Consensus 239 ~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~ 267 (700)
+|+|++|.+++... ..+..+++|+.|+++
T Consensus 297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 297 KLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp EEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred EEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 66665555443222 223455555555554
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.71 E-value=3.4e-17 Score=173.45 Aligned_cols=171 Identities=22% Similarity=0.229 Sum_probs=133.5
Q ss_pred EEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCcccccc-ccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccC
Q 005361 95 VTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWA-SLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEG 172 (700)
Q Consensus 95 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 172 (700)
+.++++++.++. +|..+. +.++.|+|++|.+++..+..+. .++ |++|+|++|.+++..+..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 367888888875 454443 4688999999999988777776 676 99999999999877777888899999999999
Q ss_pred CcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhh---cCCCcccEEEccCCCCCC
Q 005361 173 NLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFI---GKWKKIQKLHIQGSSLEG 249 (700)
Q Consensus 173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~ 249 (700)
|++....+..|..+++|+.|+|++|.++...+..|..+++|++|+|++|.++...+..+ ..+++|+.|+|++|.++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99887666778888999999999999887778888888999999999998886555555 567888888888888887
Q ss_pred CchhhhhcCCCC--CEEEcCC
Q 005361 250 PIPASISALTSL--TDLRISD 268 (700)
Q Consensus 250 ~~~~~~~~l~~L--~~L~l~~ 268 (700)
..+..+..++.+ +.|++++
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCS
T ss_pred cCHHHhhhccHhhcceEEecC
Confidence 666667666542 4444444
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=2.2e-16 Score=151.96 Aligned_cols=154 Identities=18% Similarity=0.291 Sum_probs=92.8
Q ss_pred CCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccE
Q 005361 160 TNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQK 239 (700)
Q Consensus 160 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 239 (700)
..+++|++|++++|.+. .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..+..+++|+.
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 34556666666666666 344 4666666777777666554 2235666677777777777766555666666777777
Q ss_pred EEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCC
Q 005361 240 LHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLT 319 (700)
Q Consensus 240 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 319 (700)
|++++|.+++..+..+..+++|+.|++++|.. ++ .+| .+..+++|+.|+|++|+++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~----------------------i~-~~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGA----------------------IT-DIM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTB----------------------CC-CCG-GGGGCSSCCEEECTTBCCC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCC----------------------cc-ccH-hhcCCCCCCEEECCCCCCc
Confidence 77777777655566666666666655554320 22 223 3555666667777777666
Q ss_pred CCChhhHhcCCCCCEEEccCCcCC
Q 005361 320 GGIPTTFEKLAKTNFMYLTGNKLT 343 (700)
Q Consensus 320 ~~~p~~~~~l~~L~~L~L~~N~l~ 343 (700)
+ ++ .+..+++|+.|++++|++.
T Consensus 173 ~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 173 D-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp C-CT-TGGGCSSCCEEEECBC---
T ss_pred C-hH-HhccCCCCCEEEeeCcccC
Confidence 4 22 5666677777777777664
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=3.1e-16 Score=150.88 Aligned_cols=150 Identities=17% Similarity=0.252 Sum_probs=79.6
Q ss_pred cCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccE
Q 005361 113 SKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQK 191 (700)
Q Consensus 113 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 191 (700)
..+++|+.|++++|.+.. ++ .+..++ |++|++++|.++ .+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 334455555555555542 22 233333 555555555443 1224555666666666666665545555666666666
Q ss_pred EEeeecCCCCcCchhhhCCCCCcEEEeecCc-CCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCC
Q 005361 192 LILSSNSFTGELPAELTKLTNLNDLRISDNN-FSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLK 270 (700)
Q Consensus 192 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 270 (700)
|++++|.+++..+..+..+++|++|++++|. ++ .++ .+..+++|+.|++++|.++. ++ .+..+++|+.|++++|.
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 6666666655555556666666666666665 33 333 45556666666666666553 22 45555555555555543
No 115
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=1.3e-16 Score=152.80 Aligned_cols=52 Identities=21% Similarity=0.279 Sum_probs=30.5
Q ss_pred CCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCC
Q 005361 292 CLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLT 343 (700)
Q Consensus 292 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 343 (700)
|+|++..+..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|.++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 3333344444555666666666666666666666666666666666666555
No 116
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=3.5e-16 Score=149.84 Aligned_cols=113 Identities=23% Similarity=0.298 Sum_probs=71.6
Q ss_pred ccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhh---hcCCCeeeee
Q 005361 284 LKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYI---FNSNKNVDIS 360 (700)
Q Consensus 284 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~---~~~l~~L~ls 360 (700)
|+.|+|++|.|++..+..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|+|+ .+|... +++++.|+|+
T Consensus 56 L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeC
Confidence 333344445555555556666777777777777777666666777777777777777776 344332 2356777888
Q ss_pred cCcccccCCCCCCCCCCCccceecccCCCCCCCCcccccccCCCCCCCCCCcc
Q 005361 361 LNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPADQYH 413 (700)
Q Consensus 361 ~N~l~~~~p~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~~~~~ 413 (700)
+|++ .|+|...|+..|+...... .....|..|...++
T Consensus 135 ~N~~--------~C~c~l~~l~~~~~~~~~~--------~~~~~C~~P~~l~g 171 (193)
T 2wfh_A 135 ANPL--------YCDCNMQWLSDWVKSEYKE--------PGIARCAGPGEMAD 171 (193)
T ss_dssp SSCE--------ECSGGGHHHHHHHHHSSCC--------CSCCBEEESGGGTT
T ss_pred CCCe--------ecCCcCHHHHHHHHhccCC--------CCCcCcCCchHHCC
Confidence 8844 4999999999998643111 23456776665543
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=1.5e-16 Score=160.39 Aligned_cols=165 Identities=22% Similarity=0.334 Sum_probs=84.7
Q ss_pred ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeec
Q 005361 141 LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISD 220 (700)
Q Consensus 141 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 220 (700)
+..++++++.+++.. .+..+++|++|++++|.++ .++ .+..+++|+.|+|++|.+++..+ +..+++|++|++++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 555666666665332 3555666666666666665 333 45566666666666666654332 55566666666666
Q ss_pred CcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCch
Q 005361 221 NNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPD 300 (700)
Q Consensus 221 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~ 300 (700)
|++++. +. +.. ++|+.|+|++|.+++. + .+..+++|+. |+|++|++++. +
T Consensus 95 N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~-----------------------L~Ls~N~i~~~-~- 144 (263)
T 1xeu_A 95 NRLKNL-NG-IPS-ACLSRLFLDNNELRDT-D-SLIHLKNLEI-----------------------LSIRNNKLKSI-V- 144 (263)
T ss_dssp SCCSCC-TT-CCC-SSCCEEECCSSCCSBS-G-GGTTCTTCCE-----------------------EECTTSCCCBC-G-
T ss_pred CccCCc-Cc-ccc-CcccEEEccCCccCCC-h-hhcCcccccE-----------------------EECCCCcCCCC-h-
Confidence 665532 22 111 4555555555554431 1 2333333333 33333444422 2
Q ss_pred hhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCC
Q 005361 301 YIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLT 343 (700)
Q Consensus 301 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 343 (700)
.+..+++|+.|+|++|++++. ..+..+++|+.|++++|+++
T Consensus 145 ~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 145 MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 344555555555555555543 34455555555555555554
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=8.9e-19 Score=195.76 Aligned_cols=108 Identities=16% Similarity=0.289 Sum_probs=67.1
Q ss_pred CCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEccc
Q 005361 212 NLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTK 291 (700)
Q Consensus 212 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~ 291 (700)
.|+.|+|++|.+++ +|. ++.+++|+.|+|++|.++ .+|..+..+++|+.|+|+ +
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls-----------------------~ 495 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQAS-----------------------D 495 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECC-----------------------S
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECC-----------------------C
Confidence 36666666666664 344 666666666666666666 455566666555555544 4
Q ss_pred CCCCCCCchhhcCCCCCCEEeccCCCCCCCC-hhhHhcCCCCCEEEccCCcCCCCCc
Q 005361 292 CLIHGEIPDYIGDMTKLKNIDLSFNNLTGGI-PTTFEKLAKTNFMYLTGNKLTGPVP 347 (700)
Q Consensus 292 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~ip 347 (700)
|.|++ +| .+..+++|+.|+|++|+|++.. |..+..+++|+.|+|++|++++..|
T Consensus 496 N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 496 NALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp SCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 55553 34 5666666777777777776655 6666667777777777777665443
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.63 E-value=4.2e-16 Score=157.16 Aligned_cols=170 Identities=18% Similarity=0.250 Sum_probs=135.8
Q ss_pred CCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEE
Q 005361 114 KLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKL 192 (700)
Q Consensus 114 ~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 192 (700)
.+.+++.++++.+.+++.. .+..++ |++|++++|.++. ++ .+..+++|++|+|++|++++..+ +..+++|+.|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 4667778889999988654 466677 9999999999984 45 68899999999999999996544 9999999999
Q ss_pred EeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCC
Q 005361 193 ILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGS 272 (700)
Q Consensus 193 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 272 (700)
++++|.+++ ++. +.. ++|++|++++|.+++. + .+..+++|+.|+|++|.+++. + .+..+++|+.|++++
T Consensus 91 ~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~---- 159 (263)
T 1xeu_A 91 SVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHG---- 159 (263)
T ss_dssp ECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTT----
T ss_pred ECCCCccCC-cCc-ccc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCC----
Confidence 999999985 443 333 8999999999999854 3 589999999999999999864 3 577777666666655
Q ss_pred CCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCC
Q 005361 273 ESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGG 321 (700)
Q Consensus 273 ~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 321 (700)
|.+++. ..+..+++|+.|+|++|.+++.
T Consensus 160 -------------------N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 160 -------------------NEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -------------------SCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred -------------------CcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 555543 4566778888888888888754
No 120
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.61 E-value=1.3e-16 Score=180.86 Aligned_cols=102 Identities=18% Similarity=0.209 Sum_probs=61.6
Q ss_pred CcEEEEEecCC-CCCCc-CchhhcCCCCCCEEECcCCCCCCCcccccc----ccc-ccEEEccCCC--CCC-CCchhcCC
Q 005361 92 CHVVTIALKAQ-NLTGT-LPTELSKLRYLKQLDLSRNCLTGSFSPQWA----SLQ-LVELSVMGNR--LSG-PFPKVLTN 161 (700)
Q Consensus 92 ~~v~~L~L~~~-~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~----~l~-L~~L~L~~n~--l~~-~~p~~~~~ 161 (700)
.+++.|+|+++ .++.. ++..+.++++|++|+|++|.+++..+..+. .++ |++|++++|. +.. .++..+.+
T Consensus 130 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~ 209 (594)
T 2p1m_B 130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTR 209 (594)
T ss_dssp TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHH
T ss_pred CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHh
Confidence 47899999888 44432 444455789999999999887765444333 344 8888888886 221 11222344
Q ss_pred CCCCCEEEccCCcCCCCCCccccCCCCccEEE
Q 005361 162 ITTLKNLSIEGNLFTGSIPPDIRKLINLQKLI 193 (700)
Q Consensus 162 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 193 (700)
+++|++|+|++|...+.++..+..+++|+.|+
T Consensus 210 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~ 241 (594)
T 2p1m_B 210 CPNLKSLKLNRAVPLEKLATLLQRAPQLEELG 241 (594)
T ss_dssp CTTCCEEECCTTSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCcEEecCCCCcHHHHHHHHhcCCcceEcc
Confidence 68888888887721112333344444444444
No 121
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.60 E-value=1.4e-16 Score=180.62 Aligned_cols=127 Identities=20% Similarity=0.172 Sum_probs=86.5
Q ss_pred CcEEEEEecCCCCCCcCchhhc-CCCCCCEEECcCC-CCCCC-ccccccccc-ccEEEccCCCCCCCCchhc----CCCC
Q 005361 92 CHVVTIALKAQNLTGTLPTELS-KLRYLKQLDLSRN-CLTGS-FSPQWASLQ-LVELSVMGNRLSGPFPKVL----TNIT 163 (700)
Q Consensus 92 ~~v~~L~L~~~~l~~~~~~~l~-~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-L~~L~L~~n~l~~~~p~~~----~~l~ 163 (700)
.+++.|+|+++.+++..+..+. .+++|++|+|++| .+... ++..+..++ |++|+|++|.+++..+..+ ..++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 4689999999988876666665 6899999999988 44432 344444566 9999999998776554444 3677
Q ss_pred CCCEEEccCCcCCCCCCcc----ccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEee
Q 005361 164 TLKNLSIEGNLFTGSIPPD----IRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRIS 219 (700)
Q Consensus 164 ~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 219 (700)
+|++|+|++|. ....... +..+++|+.|++++|.....++..+..+++|++|++.
T Consensus 185 ~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 185 SLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243 (594)
T ss_dssp CCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred cCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence 99999999887 2111222 2456999999999883222244555555556555543
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=1.5e-17 Score=185.73 Aligned_cols=188 Identities=12% Similarity=0.114 Sum_probs=123.1
Q ss_pred CCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecC-------------CCCcCchhhhCCCCCcEEE-eecCcCCC
Q 005361 160 TNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNS-------------FTGELPAELTKLTNLNDLR-ISDNNFSG 225 (700)
Q Consensus 160 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-------------l~~~~~~~~~~l~~L~~L~-L~~n~l~~ 225 (700)
..+++|+.|+|++|.+. .+|..++++++|+.|++++|. +.+..|..+..+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 34555666666666655 455556666666666654443 2233334444444444444 2322211
Q ss_pred CChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcC
Q 005361 226 KIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGD 304 (700)
Q Consensus 226 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~ 304 (700)
.|+.+.+.+|.+.. ++ ...|+.|++++|.+... |.+.. ++|+.|+|++|.|+ .+|..+..
T Consensus 424 ----------~L~~l~l~~n~i~~-l~-----~~~L~~L~Ls~n~l~~l--p~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 424 ----------DLRSKFLLENSVLK-ME-----YADVRVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp ----------HHHHHHHHHHHHHH-HH-----HTTCSEEECTTSCCSSC--CCGGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred ----------hhhhhhhhcccccc-cC-----ccCceEEEecCCCCCCC--cCccccccCcEeecCccccc-ccchhhhc
Confidence 11112222222221 11 12467777777666553 33555 78888888889998 77889999
Q ss_pred CCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCC-chhhh--cCCCeeeeecCcccccCCC
Q 005361 305 MTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPV-PKYIF--NSNKNVDISLNNFTWESSD 370 (700)
Q Consensus 305 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~i-p~~~~--~~l~~L~ls~N~l~~~~p~ 370 (700)
+++|+.|+|++|+|++ +| .+..+++|+.|+|++|+|++.. |..+. ++|+.|+|++|++++..|.
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 9999999999999996 67 8999999999999999999776 77764 5899999999999987664
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.58 E-value=4.9e-15 Score=141.75 Aligned_cols=129 Identities=22% Similarity=0.327 Sum_probs=80.1
Q ss_pred EEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccc-cccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccC
Q 005361 95 VTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSP-QWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEG 172 (700)
Q Consensus 95 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 172 (700)
+.++++++.++ .+|..+. ++|++|+|++|.+.+..+. .+..++ |++|+|++|.+++..|..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56778888775 4454443 2777777777777765543 355555 66666666666666666666666666666666
Q ss_pred CcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCC
Q 005361 173 NLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGK 226 (700)
Q Consensus 173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 226 (700)
|++++..+..|.++++|++|+|++|.+++..|..+..+++|++|+|++|++++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 666655555566666666666666666655555555555566665555555543
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.57 E-value=5.1e-16 Score=178.87 Aligned_cols=188 Identities=21% Similarity=0.239 Sum_probs=110.4
Q ss_pred cCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccC
Q 005361 107 TLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRK 185 (700)
Q Consensus 107 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 185 (700)
..+..+..++.|+.|+|++|.+..+ |..+..++ |++|+|++|.++ .+|..|.+|++|++|+|++|.++ .+|..|+.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNI-SANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCC-CGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCCCC-ChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 4467788888999999999888844 44444565 888888888888 77888888888888888888888 67888888
Q ss_pred CCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCC-cccEEEccCCCCCCCchhhhhcCCCCCEE
Q 005361 186 LINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWK-KIQKLHIQGSSLEGPIPASISALTSLTDL 264 (700)
Q Consensus 186 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 264 (700)
|++|++|+|++|.++ .+|..|..+++|+.|+|++|.+++.+|..+..+. .+..|+|++|.+++.+|.. |+.|
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l 364 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFI 364 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----------
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------ccee
Confidence 888888888888887 6677788888888888888888888887775543 2234678888888776643 4445
Q ss_pred EcCCCCCCCCcccccCccCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCC
Q 005361 265 RISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLT 319 (700)
Q Consensus 265 ~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 319 (700)
+++.|... ......+.+..+..+..+.++....+++|.+.
T Consensus 365 ~l~~n~~~---------------~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 365 EINTDGEP---------------QREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ----------------------------------------------------CCC
T ss_pred Eeeccccc---------------ccccCCccccccchhhcccccceeeeeccccc
Confidence 55442100 01112344444445556667777788888775
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.57 E-value=6e-15 Score=137.91 Aligned_cols=131 Identities=21% Similarity=0.173 Sum_probs=73.3
Q ss_pred CCCCEEECcCCCCC-CCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEE
Q 005361 116 RYLKQLDLSRNCLT-GSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLI 193 (700)
Q Consensus 116 ~~L~~L~L~~n~l~-~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 193 (700)
++|+.|+|++|.++ +.+|..+..++ |++|++++|.+++. ..+..+++|++|+|++|.+.+.+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 55666666666665 44455555555 66666666655543 4455566666666666666554555555566666666
Q ss_pred eeecCCCCcC-chhhhCCCCCcEEEeecCcCCCCCh---hhhcCCCcccEEEccCCCCC
Q 005361 194 LSSNSFTGEL-PAELTKLTNLNDLRISDNNFSGKIP---EFIGKWKKIQKLHIQGSSLE 248 (700)
Q Consensus 194 L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~~n~l~ 248 (700)
+++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 6666655321 1455555666666666665554333 34555555555555555544
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=1.2e-14 Score=135.86 Aligned_cols=130 Identities=24% Similarity=0.242 Sum_probs=103.7
Q ss_pred ccEEEccCCCCC-CCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEee
Q 005361 141 LVELSVMGNRLS-GPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRIS 219 (700)
Q Consensus 141 L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 219 (700)
|++|++++|.++ +.+|..+..+++|++|+|++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|++|+++
T Consensus 26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 888888888887 67777778888888888888888854 678888888888888888887678777778888888888
Q ss_pred cCcCCCCC-hhhhcCCCcccEEEccCCCCCCCch---hhhhcCCCCCEEEcCCCCCC
Q 005361 220 DNNFSGKI-PEFIGKWKKIQKLHIQGSSLEGPIP---ASISALTSLTDLRISDLKGS 272 (700)
Q Consensus 220 ~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~n~~~ 272 (700)
+|.+++.. +..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|...
T Consensus 104 ~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 104 GNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp SSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 88887542 2678888888888888888886544 46777888888877765543
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.55 E-value=1.5e-15 Score=158.71 Aligned_cols=250 Identities=15% Similarity=0.119 Sum_probs=149.9
Q ss_pred CcEEEEEecCCCCCCcCchhhcC-CCCCCEEECcCCCCC--CCcccccccccccEEEccCCCCCCCCchhcCC-------
Q 005361 92 CHVVTIALKAQNLTGTLPTELSK-LRYLKQLDLSRNCLT--GSFSPQWASLQLVELSVMGNRLSGPFPKVLTN------- 161 (700)
Q Consensus 92 ~~v~~L~L~~~~l~~~~~~~l~~-l~~L~~L~L~~n~l~--~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~------- 161 (700)
.++++|.++++ +....-..+.. +++|+.|+|++|.+. ......+.. ++.+.+..|.+ .+..|.+
T Consensus 25 ~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~--~~~~~~~~~~I---~~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 25 NSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPN--GKFYIYMANFV---PAYAFSNVVNGVTK 98 (329)
T ss_dssp HHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGG--GCCEEECTTEE---CTTTTEEEETTEEE
T ss_pred CceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccccc--ccccccccccc---CHHHhccccccccc
Confidence 46788888754 22111223444 788999999999987 222212211 34444444432 2344555
Q ss_pred -CCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCc----CCCCChhhhcC---
Q 005361 162 -ITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNN----FSGKIPEFIGK--- 233 (700)
Q Consensus 162 -l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~l~~--- 233 (700)
+++|+.|+|.+ .++...+.+|.++++|+.|++++|.+..+.+..|.++.++..+.+..+. ........|..
T Consensus 99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 88888888887 6765556678888888888888888776666677776666666544311 11111111211
Q ss_pred -----------------------CCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEc
Q 005361 234 -----------------------WKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLIL 289 (700)
Q Consensus 234 -----------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L 289 (700)
..+++.+.+.++-...........+++|+.|++.+|.+...+...+.. .+|+.|+|
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 233344444433111111111123677777777776666555555655 67777777
Q ss_pred ccCCCCCCCchhhcCCCCCC-EEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhh
Q 005361 290 TKCLIHGEIPDYIGDMTKLK-NIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF 351 (700)
Q Consensus 290 ~~n~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~ 351 (700)
.+| ++.+.+..|.++++|+ .|+|.+ +++.+.+.+|.++++|+.|++++|+++ .++...|
T Consensus 258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF 317 (329)
T 3sb4_A 258 PHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGDELF 317 (329)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECTTTT
T ss_pred Ccc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccchhhh
Confidence 776 6656666777888887 888877 666566677888888888888888777 5555444
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=9.8e-15 Score=133.47 Aligned_cols=125 Identities=25% Similarity=0.252 Sum_probs=90.7
Q ss_pred ccEEEccCCCCC-CCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEee
Q 005361 141 LVELSVMGNRLS-GPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRIS 219 (700)
Q Consensus 141 L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 219 (700)
|+.|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|++|+++
T Consensus 19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 666666666665 55666667777777777777777754 567777778888888887776677777777888888888
Q ss_pred cCcCCCC-ChhhhcCCCcccEEEccCCCCCCCch---hhhhcCCCCCEEEcC
Q 005361 220 DNNFSGK-IPEFIGKWKKIQKLHIQGSSLEGPIP---ASISALTSLTDLRIS 267 (700)
Q Consensus 220 ~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~ 267 (700)
+|.+++. .+..+..+++|+.|++++|.+++..+ ..+..+++|+.|+++
T Consensus 97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 97 GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 8887753 23667778888888888888776554 467778888887765
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=7.2e-15 Score=134.39 Aligned_cols=126 Identities=22% Similarity=0.213 Sum_probs=78.5
Q ss_pred CCCCEEECcCCCCC-CCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEE
Q 005361 116 RYLKQLDLSRNCLT-GSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLI 193 (700)
Q Consensus 116 ~~L~~L~L~~n~l~-~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 193 (700)
++|+.|++++|.++ +.+|..+..++ |++|++++|.+++. ..+..+++|++|+|++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45555555555555 44444444444 55555555555544 4566666777777777777655666666667777777
Q ss_pred eeecCCCCc-CchhhhCCCCCcEEEeecCcCCCCCh---hhhcCCCcccEEEcc
Q 005361 194 LSSNSFTGE-LPAELTKLTNLNDLRISDNNFSGKIP---EFIGKWKKIQKLHIQ 243 (700)
Q Consensus 194 L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~ 243 (700)
+++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 777776642 23566777777777777777765544 456677777777665
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.52 E-value=8.9e-14 Score=131.08 Aligned_cols=131 Identities=22% Similarity=0.264 Sum_probs=76.9
Q ss_pred EEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccC
Q 005361 94 VVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEG 172 (700)
Q Consensus 94 v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 172 (700)
.+.++++++.++.. |..+ .++|++|++++|.+++..+..+..++ |++|++++|.+++..+..|..+++|++|+|++
T Consensus 9 ~~~l~~~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSV-PTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSC-CTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccC-CCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 35677777777643 3322 35777777777777765555555555 66666666666655555556666666666666
Q ss_pred CcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCC
Q 005361 173 NLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKI 227 (700)
Q Consensus 173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 227 (700)
|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|+|++|++.+..
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 6666444444555566666666666655444444455555555555555555443
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.52 E-value=7.9e-14 Score=133.35 Aligned_cols=128 Identities=21% Similarity=0.223 Sum_probs=85.6
Q ss_pred CEEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecC
Q 005361 119 KQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNS 198 (700)
Q Consensus 119 ~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 198 (700)
+.+++++|.++.. |..+. ..|++|++++|.++ .+|..|.++++|++|+|++|.+++..+..|.++++|++|+|++|.
T Consensus 13 ~~l~~~~~~l~~i-p~~~~-~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVL-PKGIP-RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSC-CSCCC-TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcC-CCCCC-CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4677777777743 32221 12777777777776 555667777777777777777776666667777777777777777
Q ss_pred CCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCC
Q 005361 199 FTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEG 249 (700)
Q Consensus 199 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 249 (700)
+++..+..|..+++|++|+|++|.++...+..+..+++|+.|+|++|.+..
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 776666667777777777777777765555556666677777777666653
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.51 E-value=8.9e-14 Score=131.09 Aligned_cols=134 Identities=19% Similarity=0.211 Sum_probs=112.6
Q ss_pred CCCEEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeee
Q 005361 117 YLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSS 196 (700)
Q Consensus 117 ~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 196 (700)
..+.++++++.++....... ..|++|++++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|+.|++++
T Consensus 8 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp ETTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 35788999998885543221 2399999999999977777788999999999999999977667788999999999999
Q ss_pred cCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCch
Q 005361 197 NSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIP 252 (700)
Q Consensus 197 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 252 (700)
|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|+|++|.+.+..+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99997777778899999999999999997777777889999999999999987655
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.46 E-value=5.4e-13 Score=142.43 Aligned_cols=222 Identities=11% Similarity=0.075 Sum_probs=103.7
Q ss_pred hhcCCCCCCEEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCcc
Q 005361 111 ELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQ 190 (700)
Q Consensus 111 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 190 (700)
+|.+. +|+.+.|..+ ++.+...+|....|+.+.+.. .++.+.+..|.++++|+.++|..|.++......|. ..+|+
T Consensus 131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~ 206 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIE 206 (401)
T ss_dssp TTTTC-CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCS
T ss_pred hcccC-CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccC
Confidence 44443 4555555443 444444445443455555553 44434444555555555555555555533333333 35555
Q ss_pred EEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCC
Q 005361 191 KLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLK 270 (700)
Q Consensus 191 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 270 (700)
.+.|..+ ++.+-..+|.++++|+.+++..| ++..-...|.. .+|+.+.|. +.++......|.++++|+.+.+.++.
T Consensus 207 ~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~ 282 (401)
T 4fdw_A 207 EVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGST 282 (401)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSC
T ss_pred EEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCcc
Confidence 5555532 44344445555555555555543 33233334444 455555553 23333334455555555555555433
Q ss_pred CC-----CCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCC
Q 005361 271 GS-----ESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLT 343 (700)
Q Consensus 271 ~~-----~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 343 (700)
.. ......+.. .+|+.+.|. +.++.+....|.++++|+.|+|..| ++.....+|.++ +|+.+++.+|.+.
T Consensus 283 ~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 283 FNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp CCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred ccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 22 111111222 445555554 2244333444555555555555333 333334445555 5555555555443
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.44 E-value=1.6e-13 Score=143.16 Aligned_cols=236 Identities=11% Similarity=0.020 Sum_probs=142.5
Q ss_pred CcEEEEEecCCCCC--CcCchhhcCCCCCCEEECcCCCCCCCccccccc--------cc-ccEEEccCCCCCCCCchhcC
Q 005361 92 CHVVTIALKAQNLT--GTLPTELSKLRYLKQLDLSRNCLTGSFSPQWAS--------LQ-LVELSVMGNRLSGPFPKVLT 160 (700)
Q Consensus 92 ~~v~~L~L~~~~l~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~--------l~-L~~L~L~~n~l~~~~p~~~~ 160 (700)
.+++.|+|++|++. ..... .++.++.+.+..|.+ .+.+|.. +. |+.|+|.+ .++.+.+..|.
T Consensus 49 ~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~ 121 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFK 121 (329)
T ss_dssp TTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTT
T ss_pred ccCeEEecCcceeEEecCccc---ccccccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHHhh
Confidence 46889999988877 11111 111223333333321 2233333 44 55555555 55444444555
Q ss_pred CCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecC----CCCcCchhhhC--------------------------C
Q 005361 161 NITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNS----FTGELPAELTK--------------------------L 210 (700)
Q Consensus 161 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~--------------------------l 210 (700)
++++|++|+|++|.+....+..|.++.++..+.+..+. ........|.+ .
T Consensus 122 ~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~ 201 (329)
T 3sb4_A 122 GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQP 201 (329)
T ss_dssp TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCG
T ss_pred cCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCc
Confidence 55555555555555554444455554444444433210 01111111222 3
Q ss_pred CCCcEEEeecCcCCCCChhhh-cCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCcc-EE
Q 005361 211 TNLNDLRISDNNFSGKIPEFI-GKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLK-TL 287 (700)
Q Consensus 211 ~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~-~L 287 (700)
.++..+.+.++-.. .....+ ..+++|+.|+|++|.++...+..|.++.+|+.|++.+| +.......+.. .+|+ .|
T Consensus 202 ~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l 279 (329)
T 3sb4_A 202 RDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTL 279 (329)
T ss_dssp GGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred cccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEE
Confidence 44455555443211 111112 23778899999988888666677888999999998885 55544444666 7788 99
Q ss_pred EcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEc
Q 005361 288 ILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYL 337 (700)
Q Consensus 288 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 337 (700)
++.+ .++.+.+..|.++++|+.|+|+.|+++...+.+|.++++|+.++.
T Consensus 280 ~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 280 ELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 9988 777677789999999999999999999888889999999999874
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.43 E-value=1.2e-13 Score=130.09 Aligned_cols=131 Identities=24% Similarity=0.203 Sum_probs=74.2
Q ss_pred hcCCCCCCEEECcCCCCCCCcccccccc-cccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCcc
Q 005361 112 LSKLRYLKQLDLSRNCLTGSFSPQWASL-QLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQ 190 (700)
Q Consensus 112 l~~l~~L~~L~L~~n~l~~~~~~~~~~l-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 190 (700)
+.++++|+.|++++|.++.. +...... .|++|++++|.+++. ..+..+++|++|+|++|.+++..+..|..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 45566677777777766643 3333333 266666666666543 4456666666666666666643333345666666
Q ss_pred EEEeeecCCCCcCch--hhhCCCCCcEEEeecCcCCCCChh----hhcCCCcccEEEccCCCC
Q 005361 191 KLILSSNSFTGELPA--ELTKLTNLNDLRISDNNFSGKIPE----FIGKWKKIQKLHIQGSSL 247 (700)
Q Consensus 191 ~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l 247 (700)
+|++++|.+. .+|. .+..+++|+.|++++|+++ .+|. .+..+++|+.|+++.|..
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 6666666664 3343 5556666666666666665 2333 255555555555555543
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.42 E-value=1.2e-12 Score=139.87 Aligned_cols=241 Identities=7% Similarity=0.072 Sum_probs=188.1
Q ss_pred CcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEc
Q 005361 92 CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSI 170 (700)
Q Consensus 92 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 170 (700)
++++.+.|..+ ++.....+|.+. +|+.+.|.. .+..+...+|..+. |+.+++.+|.++.+....|. ..+|+.+.|
T Consensus 135 ~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~l 210 (401)
T 4fdw_A 135 SQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLL 210 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEEC
T ss_pred CCccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEe
Confidence 45777777655 666666778774 799999985 67767778888887 99999999999866666666 589999999
Q ss_pred cCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCC--
Q 005361 171 EGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLE-- 248 (700)
Q Consensus 171 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-- 248 (700)
..+ +......+|.++++|+.+++..+ ++.+-..+|.+ .+|+.+.|. +.++......|..+++|+.+++.+|.+.
T Consensus 211 p~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~ 286 (401)
T 4fdw_A 211 PVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDD 286 (401)
T ss_dssp CTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCC
T ss_pred CCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCC
Confidence 855 66566778999999999999875 55555667877 789999994 4566566778999999999999887765
Q ss_pred ---CCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChh
Q 005361 249 ---GPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPT 324 (700)
Q Consensus 249 ---~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 324 (700)
...+..|.++++|+.+.+.+ ++.......+.. .+|+.|.|..+ ++.+....|.++ +|+.|++++|.+....+.
T Consensus 287 ~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~ 363 (401)
T 4fdw_A 287 PEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEK 363 (401)
T ss_dssp TTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCS
T ss_pred cccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccc
Confidence 34567799999999999985 455555555666 89999999655 776777889999 999999999998877777
Q ss_pred hHhcCC-CCCEEEccCCcCC
Q 005361 325 TFEKLA-KTNFMYLTGNKLT 343 (700)
Q Consensus 325 ~~~~l~-~L~~L~L~~N~l~ 343 (700)
.|.+++ .+..|++..+.+.
T Consensus 364 ~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 364 VWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp SCCCSCTTCCEEEECGGGHH
T ss_pred cccCCCCCccEEEeCHHHHH
Confidence 777774 6778877776543
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.42 E-value=3.8e-13 Score=125.77 Aligned_cols=100 Identities=22% Similarity=0.219 Sum_probs=57.9
Q ss_pred ccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhh--hcCCCeeeeec
Q 005361 284 LKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYI--FNSNKNVDISL 361 (700)
Q Consensus 284 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~--~~~l~~L~ls~ 361 (700)
|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+|++..+..+ +.+++.|+|++
T Consensus 32 l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 32 TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCC
Confidence 4444555555555555556666666666666666665555555666666666666666663333222 23556666666
Q ss_pred CcccccCCCCCCCCCC-CccceecccCCCCC
Q 005361 362 NNFTWESSDPIECPRG-SVNLVESYSSPRNK 391 (700)
Q Consensus 362 N~l~~~~p~~~~C~~~-~~~~~~~~~~~~~~ 391 (700)
|++ .|+|. ..++..|+......
T Consensus 112 N~~--------~c~c~~l~~l~~~l~~~~~~ 134 (170)
T 3g39_A 112 NPW--------DCACSDILYLSRWISQHPGL 134 (170)
T ss_dssp SCB--------CTTBGGGHHHHHHHHHCGGG
T ss_pred CCC--------CCCchhHHHHHHHHHhCcce
Confidence 633 38885 56666777655433
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.38 E-value=4e-15 Score=143.20 Aligned_cols=148 Identities=22% Similarity=0.295 Sum_probs=83.3
Q ss_pred cCCCCCCEEECcCCCCCCCccc------cccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccC
Q 005361 113 SKLRYLKQLDLSRNCLTGSFSP------QWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRK 185 (700)
Q Consensus 113 ~~l~~L~~L~L~~n~l~~~~~~------~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 185 (700)
.....++.++++.+.+.+..|. .+..++ |++|++++|.+++ +| .+..+++|++|++++|.+. .+|..+..
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~ 91 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV 91 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence 3344455555555555444443 444444 5555555555553 34 5555666666666666665 45555555
Q ss_pred CCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCCh-hhhcCCCcccEEEccCCCCCCCchh----------h
Q 005361 186 LINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIP-EFIGKWKKIQKLHIQGSSLEGPIPA----------S 254 (700)
Q Consensus 186 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~----------~ 254 (700)
+++|+.|++++|.+++ +| .+..+++|++|++++|.++...+ ..+..+++|+.|++++|.+.+..|. .
T Consensus 92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~ 169 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169 (198)
T ss_dssp HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence 5666666666666663 33 45566666666666666653222 3566666666666666666544332 2
Q ss_pred hhcCCCCCEEE
Q 005361 255 ISALTSLTDLR 265 (700)
Q Consensus 255 ~~~l~~L~~L~ 265 (700)
+..+++|+.|+
T Consensus 170 ~~~l~~L~~Ld 180 (198)
T 1ds9_A 170 VKRLPNLKKLD 180 (198)
T ss_dssp HHHCSSCSEEC
T ss_pred HHhCCCcEEEC
Confidence 55666666664
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.38 E-value=6.1e-13 Score=125.20 Aligned_cols=125 Identities=14% Similarity=0.197 Sum_probs=94.2
Q ss_pred ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeec
Q 005361 141 LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISD 220 (700)
Q Consensus 141 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 220 (700)
|++|++++|.++. +|......++|++|+|++|.+++. ..|..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 21 L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 97 (176)
T 1a9n_A 21 DRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 97 (176)
T ss_dssp CEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred ceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCC
Confidence 8888888888884 454333344888888888888854 5778888888888888888865555568888888888888
Q ss_pred CcCCCCChh--hhcCCCcccEEEccCCCCCCCchh----hhhcCCCCCEEEcCCCC
Q 005361 221 NNFSGKIPE--FIGKWKKIQKLHIQGSSLEGPIPA----SISALTSLTDLRISDLK 270 (700)
Q Consensus 221 n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~n~ 270 (700)
|.++ .+|. .+..+++|+.|++++|.+.. +|. .+..+++|+.|++++|.
T Consensus 98 N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 98 NSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECC
T ss_pred CcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCC
Confidence 8886 4554 67788888888888888873 444 37777888887777654
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.36 E-value=6e-15 Score=141.95 Aligned_cols=155 Identities=21% Similarity=0.276 Sum_probs=102.8
Q ss_pred cCCCCCCCEEEccCCcCCCCCCc------cccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhc
Q 005361 159 LTNITTLKNLSIEGNLFTGSIPP------DIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIG 232 (700)
Q Consensus 159 ~~~l~~L~~L~L~~n~l~~~~p~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 232 (700)
+.....++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|+.|++++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 34456677777777777766665 77778888888888887775 55 6777788888888888777 5566666
Q ss_pred CCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCCCc-hhhcCCCCCCEE
Q 005361 233 KWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGEIP-DYIGDMTKLKNI 311 (700)
Q Consensus 233 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L 311 (700)
.+++|+.|++++|.+++ +| .+..+++|+.| +|++|.+++..+ ..+..+++|+.|
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L-----------------------~l~~N~i~~~~~~~~l~~l~~L~~L 145 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVL-----------------------YMSNNKITNWGEIDKLAALDKLEDL 145 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEE-----------------------EESEEECCCHHHHHHHTTTTTCSEE
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEE-----------------------ECCCCcCCchhHHHHHhcCCCCCEE
Confidence 66777777777777764 33 35444444444 444555553222 356677777777
Q ss_pred eccCCCCCCCChh----------hHhcCCCCCEEEccCCcCC
Q 005361 312 DLSFNNLTGGIPT----------TFEKLAKTNFMYLTGNKLT 343 (700)
Q Consensus 312 ~Ls~N~l~~~~p~----------~~~~l~~L~~L~L~~N~l~ 343 (700)
++++|.+++.+|. .+..+++|+.|| +|.++
T Consensus 146 ~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 146 LLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp EECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred EecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 7777777655443 266777777765 55554
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.35 E-value=4.1e-12 Score=118.72 Aligned_cols=104 Identities=20% Similarity=0.265 Sum_probs=52.6
Q ss_pred CEEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecC
Q 005361 119 KQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNS 198 (700)
Q Consensus 119 ~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 198 (700)
+.+++++|.++.. |..+. ..|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|.
T Consensus 12 ~~l~~s~n~l~~i-p~~~~-~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLASV-PTGIP-TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSSC-CSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcc-CccCC-CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 4566666666543 22211 115555555555555555555555555555555555554444444555555555555555
Q ss_pred CCCcCchhhhCCCCCcEEEeecCcCC
Q 005361 199 FTGELPAELTKLTNLNDLRISDNNFS 224 (700)
Q Consensus 199 l~~~~~~~~~~l~~L~~L~L~~n~l~ 224 (700)
+++..+..|..+++|++|+|++|+++
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 55443444555555555555555544
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.31 E-value=8.5e-12 Score=116.96 Aligned_cols=104 Identities=17% Similarity=0.215 Sum_probs=59.0
Q ss_pred CEEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecC
Q 005361 119 KQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNS 198 (700)
Q Consensus 119 ~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 198 (700)
+.+++++|.+... |..+. ..|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|..+++|+.|+|++|.
T Consensus 15 ~~l~~~~n~l~~i-P~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASV-PAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSC-CSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCcc-CCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 4667777766533 32221 226666666666665556666666666666666666664444445556666666666666
Q ss_pred CCCcCchhhhCCCCCcEEEeecCcCC
Q 005361 199 FTGELPAELTKLTNLNDLRISDNNFS 224 (700)
Q Consensus 199 l~~~~~~~~~~l~~L~~L~L~~n~l~ 224 (700)
+++..+..|..+++|++|+|++|++.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 65444444555555666555555555
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.30 E-value=5.3e-12 Score=132.63 Aligned_cols=113 Identities=16% Similarity=0.151 Sum_probs=90.7
Q ss_pred cCccEEEccc-CCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhhc--CCCeee
Q 005361 282 MNLKTLILTK-CLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIFN--SNKNVD 358 (700)
Q Consensus 282 ~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~--~l~~L~ 358 (700)
.+|+.|+|++ |.|++..+..|..+++|+.|+|++|+|++..|..|.++++|+.|+|++|+|+ .+|...+. .|+.|+
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~L~~l~ 109 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELV 109 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEE
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-eeCHHHcccCCceEEE
Confidence 4566667775 8888788888999999999999999999988999999999999999999999 56655544 488999
Q ss_pred eecCcccccCCCCCCCCCCCccceecccCCCCCCCCcccccccCCCCCCCC
Q 005361 359 ISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSAPA 409 (700)
Q Consensus 359 ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p~ 409 (700)
|.+|+ |.|+|...|+..|+......+. ...+.|..|.
T Consensus 110 l~~N~--------~~c~c~l~~~~~~~~~~~~~l~------~~~~~C~~~~ 146 (347)
T 2ifg_A 110 LSGNP--------LHCSCALRWLQRWEEEGLGGVP------EQKLQCHGQG 146 (347)
T ss_dssp CCSSC--------CCCCGGGHHHHHHHHTTCSSCG------GGCCCCSSSS
T ss_pred eeCCC--------ccCCCccHHHHHHHHhCccccc------ccCCCCCCCh
Confidence 99994 4599999999999876544332 3567777766
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.27 E-value=2.2e-11 Score=114.15 Aligned_cols=104 Identities=19% Similarity=0.238 Sum_probs=80.7
Q ss_pred EEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCC
Q 005361 95 VTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGN 173 (700)
Q Consensus 95 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 173 (700)
+.++++++.++ .+|..+. ++|++|+|++|.+++..|..|..++ |++|+|++|++++..+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56778888775 4454443 7888888888888888788888777 888888888888766666778888888888888
Q ss_pred cCCCCCCccccCCCCccEEEeeecCCCC
Q 005361 174 LFTGSIPPDIRKLINLQKLILSSNSFTG 201 (700)
Q Consensus 174 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 201 (700)
++++..+..|..+++|+.|+|++|.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 8886555568888888888888888773
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.12 E-value=2e-12 Score=136.66 Aligned_cols=12 Identities=33% Similarity=0.642 Sum_probs=6.4
Q ss_pred ccEEEccCCCCC
Q 005361 141 LVELSVMGNRLS 152 (700)
Q Consensus 141 L~~L~L~~n~l~ 152 (700)
|+.|+|++|.++
T Consensus 74 L~~L~Ls~n~l~ 85 (372)
T 3un9_A 74 LRQLNLAGVRMT 85 (372)
T ss_dssp CCEEECTTSCCC
T ss_pred CCEEEecCCCCC
Confidence 555555555554
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.11 E-value=6.2e-12 Score=132.88 Aligned_cols=160 Identities=14% Similarity=0.188 Sum_probs=86.6
Q ss_pred CCCCCEEEccCCcCCCCCCccccC-----CCCccEEEeeecCCCCcCchhh-hCCCCCcEEEeecCcCCCCChhhh----
Q 005361 162 ITTLKNLSIEGNLFTGSIPPDIRK-----LINLQKLILSSNSFTGELPAEL-TKLTNLNDLRISDNNFSGKIPEFI---- 231 (700)
Q Consensus 162 l~~L~~L~L~~n~l~~~~p~~~~~-----l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~l---- 231 (700)
++.|++|+|++|.++......+.. .++|+.|+|++|.++......+ ..+++|+.|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 356788888888776332222222 2577777777777653322222 234566777777776653322222
Q ss_pred -cCCCcccEEEccCCCCCCC----chhhhhcCCCCCEEEcCCCCCCCCcccccCccCccEEEcccCCCCCC----Cchhh
Q 005361 232 -GKWKKIQKLHIQGSSLEGP----IPASISALTSLTDLRISDLKGSESAFPKLDKMNLKTLILTKCLIHGE----IPDYI 302 (700)
Q Consensus 232 -~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~L~~L~L~~n~l~~~----~p~~~ 302 (700)
...++|+.|+|++|.++.. ++..+...++|+.|+|++ |.|+.. +...+
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~-----------------------N~l~~~g~~~L~~~L 207 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLH-----------------------TGLGDEGLELLAAQL 207 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTT-----------------------SSCHHHHHHHHHHHG
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCC-----------------------CCCCcHHHHHHHHHH
Confidence 2345666666666665431 222334444455554444 444321 23344
Q ss_pred cCCCCCCEEeccCCCCCCC----ChhhHhcCCCCCEEEccCCcCCC
Q 005361 303 GDMTKLKNIDLSFNNLTGG----IPTTFEKLAKTNFMYLTGNKLTG 344 (700)
Q Consensus 303 ~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~ 344 (700)
...++|+.|+|++|.|+.. +...+...++|+.|+|++|.|+.
T Consensus 208 ~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 208 DRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp GGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred hcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 5556677777777766532 22344455667777777776653
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.08 E-value=2e-10 Score=120.61 Aligned_cols=103 Identities=20% Similarity=0.233 Sum_probs=65.0
Q ss_pred EEccCC-CCCCCCchhcCCCCCCCEEEccC-CcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecC
Q 005361 144 LSVMGN-RLSGPFPKVLTNITTLKNLSIEG-NLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDN 221 (700)
Q Consensus 144 L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 221 (700)
++++++ .++ .+|. +..+++|++|+|++ |.+.+..+..|.+|++|+.|+|++|.|++..|..|.++++|+.|+|++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 355554 555 3455 66666666666664 6666555566666666777777766666666666666777777777777
Q ss_pred cCCCCChhhhcCCCcccEEEccCCCCCC
Q 005361 222 NFSGKIPEFIGKWKKIQKLHIQGSSLEG 249 (700)
Q Consensus 222 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 249 (700)
+|++..+..+..++ |+.|+|.+|.+..
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 76655555555444 6677777666654
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.91 E-value=6.4e-09 Score=111.04 Aligned_cols=259 Identities=12% Similarity=0.075 Sum_probs=132.7
Q ss_pred cEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCC---------------------C
Q 005361 93 HVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGN---------------------R 150 (700)
Q Consensus 93 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n---------------------~ 150 (700)
+++.+.|.. .++..-..+|.++++|+.++|.++ ++.+-..+|.... |+.+.+..+ .
T Consensus 72 ~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~~ 149 (394)
T 4fs7_A 72 KVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPEG 149 (394)
T ss_dssp TEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCTT
T ss_pred CceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccccCcc
Confidence 688888864 466566677888888888888654 4433344444443 444433321 1
Q ss_pred CCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhh
Q 005361 151 LSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEF 230 (700)
Q Consensus 151 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 230 (700)
+.......|.++++|+.+.+..+. .......|.++.+|+.+.+..+ ++.+....|.++..|+.+.+..+... +.+.
T Consensus 150 ~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~ 225 (394)
T 4fs7_A 150 VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDF 225 (394)
T ss_dssp CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTT
T ss_pred ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehh
Confidence 111223346666777777776543 2233455666677777766554 33333445556666665555443221 1122
Q ss_pred hcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCC------------------ccc--ccCc-cCccEEEc
Q 005361 231 IGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSES------------------AFP--KLDK-MNLKTLIL 289 (700)
Q Consensus 231 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~------------------~~~--~l~~-~~L~~L~L 289 (700)
.....+|+.+.+..+ +.......|..+..|+.+.+..+..... .++ .+.. .+|+.+.+
T Consensus 226 ~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l 304 (394)
T 4fs7_A 226 ALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKL 304 (394)
T ss_dssp TTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEE
T ss_pred hcccCCCceEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeecccccccccccccccc
Confidence 222334445444322 1112223344555555555543211000 011 1222 56666666
Q ss_pred ccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhh---cCCCeeeeecC
Q 005361 290 TKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF---NSNKNVDISLN 362 (700)
Q Consensus 290 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~---~~l~~L~ls~N 362 (700)
..+ ++.+....|.++.+|+.++|..+ ++.....+|.++.+|+.+++..| ++ .++...| .+|+.+++..+
T Consensus 305 ~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 305 LDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEGG
T ss_pred ccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECCC
Confidence 543 44344456666677777777543 55444556667777777776655 44 4444333 24666666544
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.86 E-value=1.7e-09 Score=113.34 Aligned_cols=82 Identities=21% Similarity=0.235 Sum_probs=56.6
Q ss_pred cCccEEEcccCCCCCCCchhhc---CCCCCCEEeccCCCCCCC----ChhhHhcCCCCCEEEccCCcCCCCCchhhhcCC
Q 005361 282 MNLKTLILTKCLIHGEIPDYIG---DMTKLKNIDLSFNNLTGG----IPTTFEKLAKTNFMYLTGNKLTGPVPKYIFNSN 354 (700)
Q Consensus 282 ~~L~~L~L~~n~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l 354 (700)
++|+.|+|.+|.+....+..+. .+++|++|+|+.|.|.+. ++..+..+++|+.|+|++|.++...-..+...+
T Consensus 252 p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al 331 (362)
T 2ra8_A 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL 331 (362)
T ss_dssp TTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC
T ss_pred CCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc
Confidence 6888888888887643333332 478899999999998853 233445678999999999988744333333323
Q ss_pred -CeeeeecCc
Q 005361 355 -KNVDISLNN 363 (700)
Q Consensus 355 -~~L~ls~N~ 363 (700)
..+++++|+
T Consensus 332 g~~~~~~~~~ 341 (362)
T 2ra8_A 332 PMKIDVSDSQ 341 (362)
T ss_dssp CSEEECCSBC
T ss_pred CCEEEecCCc
Confidence 567777774
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.77 E-value=3.8e-08 Score=105.03 Aligned_cols=260 Identities=12% Similarity=0.136 Sum_probs=149.3
Q ss_pred EEEEEecCCCCCCcCchhhcCCCCCCEEECcCCC---CCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEE
Q 005361 94 VVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNC---LTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLS 169 (700)
Q Consensus 94 v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~---l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 169 (700)
++.+.+..+ ++..-..+|.++++|+.+.+..|. ++.+-..+|.... |+.+.+..+ ++.+....|.++.+|+.+.
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 666666543 555556678888888888887653 4434445555544 666655543 3334445566777777777
Q ss_pred ccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCC----
Q 005361 170 IEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGS---- 245 (700)
Q Consensus 170 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n---- 245 (700)
+..+. .......|.++.+|+.+.+..+ ++.+-..+|.. .+|+.+.+..+-.. .-...+..+.++.......+
T Consensus 144 lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~ 219 (394)
T 4gt6_A 144 IPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYPA 219 (394)
T ss_dssp CCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCB
T ss_pred cccee-eeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccceeccccccccc
Confidence 76432 2234455666677777766543 33233333432 44555555432211 11222333333333322111
Q ss_pred --------------------------------CCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccC
Q 005361 246 --------------------------------SLEGPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKC 292 (700)
Q Consensus 246 --------------------------------~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n 292 (700)
.+...-..+|.++.+|+.+.+.+. .....-..+.. .+|+.+.+. +
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~ 297 (394)
T 4gt6_A 220 IDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-S 297 (394)
T ss_dssp SSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-T
T ss_pred ccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccc-cceecCcccccccccccccCC-C
Confidence 111122345777788888887653 22222223444 678888885 4
Q ss_pred CCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhh---cCCCeeeeecCcc
Q 005361 293 LIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF---NSNKNVDISLNNF 364 (700)
Q Consensus 293 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~---~~l~~L~ls~N~l 364 (700)
.++.+....|.++.+|+.++|..+ ++.+...+|.++.+|+.+.|..+ ++ .|....| .+|+.+++.+|..
T Consensus 298 ~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 298 RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCHH
T ss_pred cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCcee
Confidence 455455667888888888888765 55555678888888888888654 55 5655544 3678888887753
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.74 E-value=4e-09 Score=110.44 Aligned_cols=208 Identities=17% Similarity=0.169 Sum_probs=101.9
Q ss_pred cCcEEEEEecCCCCCC-cC-------chhhcCCCCCCEEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcCCC
Q 005361 91 TCHVVTIALKAQNLTG-TL-------PTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNI 162 (700)
Q Consensus 91 ~~~v~~L~L~~~~l~~-~~-------~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~l 162 (700)
..+|+.|.+......+ .. ..++..+++|+.|.+..+..... .++... .+.+...+..+
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~-------------~is~~~-~~~L~~ll~~~ 171 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQ-------------EISWIE-QVDLSPVLDAM 171 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTC-------------CGGGCB-CCBCHHHHHTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhc-------------cccccc-ccCHHHHHhcC
Confidence 4568888888665542 21 23345678888888865432210 000000 01233344455
Q ss_pred CCCCEEEccCCcCCCCCCccccCCCCccEEEeeecCCCCcCchhhh--CCCCCcEEEeec--CcCCCC-----Chhhh--
Q 005361 163 TTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELT--KLTNLNDLRISD--NNFSGK-----IPEFI-- 231 (700)
Q Consensus 163 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~--n~l~~~-----~~~~l-- 231 (700)
|+|+.|+|++|.-. .++. + .+++|+.|+|..+.+.......+. .+++|+.|+|+. |...+. +...+
T Consensus 172 P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~ 248 (362)
T 2ra8_A 172 PLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248 (362)
T ss_dssp TTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred CCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence 66666666555211 1222 2 255666666666555432222332 466666666642 111111 01112
Q ss_pred cCCCcccEEEccCCCCCCCchhhhh---cCCCCCEEEcCCCCCCCCcccc----cCc-cCccEEEcccCCCCCCCchhhc
Q 005361 232 GKWKKIQKLHIQGSSLEGPIPASIS---ALTSLTDLRISDLKGSESAFPK----LDK-MNLKTLILTKCLIHGEIPDYIG 303 (700)
Q Consensus 232 ~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~l~~n~~~~~~~~~----l~~-~~L~~L~L~~n~l~~~~p~~~~ 303 (700)
..+++|+.|+|.+|.+....+..+. .+++|+.|+|+.|.+....... +.. ++|+.|+|++|.++...-..+.
T Consensus 249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~ 328 (362)
T 2ra8_A 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ 328 (362)
T ss_dssp TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHH
T ss_pred CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHH
Confidence 2356666666666665532222232 3556677777665544422111 122 5677777777776643333333
Q ss_pred C-CCCCCEEeccCCC
Q 005361 304 D-MTKLKNIDLSFNN 317 (700)
Q Consensus 304 ~-l~~L~~L~Ls~N~ 317 (700)
. + ...++++.++
T Consensus 329 ~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 329 KSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHC--CSEEECCSBC
T ss_pred HHc--CCEEEecCCc
Confidence 2 2 3567888776
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.62 E-value=1.6e-07 Score=100.03 Aligned_cols=220 Identities=13% Similarity=0.129 Sum_probs=146.8
Q ss_pred chhhcCCCCCCEEECcCCCCCCCccccccccc-ccEEEccCCCCCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCC
Q 005361 109 PTELSKLRYLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLI 187 (700)
Q Consensus 109 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 187 (700)
..+|.++++|+.+.+.++ +..+....|.... |+.+.+..+ ++.+....|.++..|+.+.+..+... +...+....
T Consensus 155 ~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~ 230 (394)
T 4fs7_A 155 DEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKT 230 (394)
T ss_dssp TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTC
T ss_pred hhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccC
Confidence 345667777777777544 2334445555555 777776654 44344555667777777766655332 223334456
Q ss_pred CccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcC
Q 005361 188 NLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRIS 267 (700)
Q Consensus 188 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 267 (700)
+|+.+.+..+ ++......|..+.+|+.+.+..+... .....+..+..++.+.+..+.+. ...|..+.+|+.+.+.
T Consensus 231 ~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~ 305 (394)
T 4fs7_A 231 GVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLL 305 (394)
T ss_dssp CCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEEC
T ss_pred CCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccc
Confidence 7777777543 33344556777888888888766443 44556777778888777665432 3457788899999887
Q ss_pred CCCCCCCcccccCc-cCccEEEcccCCCCCCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCC
Q 005361 268 DLKGSESAFPKLDK-MNLKTLILTKCLIHGEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGN 340 (700)
Q Consensus 268 ~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 340 (700)
+ ++....-..+.. .+|+.++|..+ ++.+-..+|.++.+|+.++|..| ++.....+|.++++|+.+++..+
T Consensus 306 ~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 306 D-SVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp T-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred c-ccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 6 344333344555 78999999754 66566778999999999999877 77667789999999999999765
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.59 E-value=4.7e-07 Score=96.47 Aligned_cols=245 Identities=11% Similarity=0.125 Sum_probs=170.9
Q ss_pred CchhhcCCC-CCCEEECcCCCCCCCccccccccc-ccEEEccCCC---CCCCCchhcCCCCCCCEEEccCCcCCCCCCcc
Q 005361 108 LPTELSKLR-YLKQLDLSRNCLTGSFSPQWASLQ-LVELSVMGNR---LSGPFPKVLTNITTLKNLSIEGNLFTGSIPPD 182 (700)
Q Consensus 108 ~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l~-L~~L~L~~n~---l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 182 (700)
-..+|.+++ .|+.+.|.. .++.+-..+|.... |+.+.+..|. ++.+-...|.++.+|+.+.+..+ ++......
T Consensus 55 g~~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a 132 (394)
T 4gt6_A 55 GDRVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEA 132 (394)
T ss_dssp CTTTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTT
T ss_pred CHhhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhh
Confidence 345677774 599999975 36666678888877 9999998764 55555677888999999888765 44355667
Q ss_pred ccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCC
Q 005361 183 IRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLT 262 (700)
Q Consensus 183 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 262 (700)
|..+.+|+.+.+..+ +..+....|..+.+|+.+.+..+ ++..-...|. ..+|+.+.+..+... .....|..+.+|+
T Consensus 133 F~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~ 208 (394)
T 4gt6_A 133 FHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALS 208 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCC
T ss_pred hhhhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhccccc
Confidence 889999999999754 44355678889999999999765 3323334454 367999988765332 3445566777776
Q ss_pred EEEcCCCCCC---------------------------CCccc---------ccCc-cCccEEEcccCCCCCCCchhhcCC
Q 005361 263 DLRISDLKGS---------------------------ESAFP---------KLDK-MNLKTLILTKCLIHGEIPDYIGDM 305 (700)
Q Consensus 263 ~L~l~~n~~~---------------------------~~~~~---------~l~~-~~L~~L~L~~n~l~~~~p~~~~~l 305 (700)
.......... ...+| .+.. ..|+.+.+..+..+ .....|.++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c 287 (394)
T 4gt6_A 209 TITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNC 287 (394)
T ss_dssp EEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTC
T ss_pred eecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccce-ecCcccccc
Confidence 6654321110 01111 1333 67888988765443 556688899
Q ss_pred CCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhh---cCCCeeeeecC
Q 005361 306 TKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF---NSNKNVDISLN 362 (700)
Q Consensus 306 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~---~~l~~L~ls~N 362 (700)
++|+.+.+. +.++.....+|.++.+|+.++|..+ ++ .|....| .+|+.+.|..+
T Consensus 288 ~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~s 344 (394)
T 4gt6_A 288 PALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPSS 344 (394)
T ss_dssp TTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEECTT
T ss_pred cccccccCC-CcccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECcc
Confidence 999999997 5566566778999999999999875 54 5555444 46889998765
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.43 E-value=2.2e-06 Score=90.75 Aligned_cols=258 Identities=14% Similarity=0.122 Sum_probs=155.4
Q ss_pred cEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcCCCCCCCEEEccC
Q 005361 93 HVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEG 172 (700)
Q Consensus 93 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 172 (700)
+++.+.+.. .++.+-..+|.++.+|+.++|..+ ++.+-..+|....|+.+.+..+ ++.+....|.+ .+|+.+.+..
T Consensus 47 ~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~lp~ 122 (379)
T 4h09_A 47 RISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADTKLQSYTGMER-VKKFGDYVFQG-TDLDDFEFPG 122 (379)
T ss_dssp GCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCCCCEEEECTT-CCEECTTTTTT-CCCSEEECCT
T ss_pred CCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCCCCceEECCce-eeEeccceecc-CCcccccCCC
Confidence 566666653 355455667888888888888643 5555566666666777666543 43333344544 3677777765
Q ss_pred CcCCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeecCcC-----------------------------
Q 005361 173 NLFTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISDNNF----------------------------- 223 (700)
Q Consensus 173 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l----------------------------- 223 (700)
+- .......|.+. +|+.+.+..+ ++......|..+.+++.+.+..+..
T Consensus 123 ~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (379)
T 4h09_A 123 AT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEF 199 (379)
T ss_dssp TC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEE
T ss_pred cc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccccccccc
Confidence 42 21222233332 4444444322 2223333444444454444432211
Q ss_pred ------CCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCCC
Q 005361 224 ------SGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIHG 296 (700)
Q Consensus 224 ------~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~~ 296 (700)
.......+....+|+.+.+..+ +.......|.++..|+.+.+..+ +.......+.. .+|+.+.+..+ ++.
T Consensus 200 ~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~ 276 (379)
T 4h09_A 200 TIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKT 276 (379)
T ss_dssp ECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSE
T ss_pred ccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-cee
Confidence 1112234556677888887654 33344566788888999888763 33333333444 67888888654 554
Q ss_pred CCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhh---cCCCeeeeecC
Q 005361 297 EIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF---NSNKNVDISLN 362 (700)
Q Consensus 297 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~---~~l~~L~ls~N 362 (700)
.....|.++++|+.+.+.++.++.....+|.++.+|+.+.|..+ ++ .|....| .+|+.+.+..+
T Consensus 277 i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 277 VPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp ECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECCc
Confidence 55567888999999999988888777788999999999999765 54 5555444 35777777654
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.28 E-value=8.8e-07 Score=77.87 Aligned_cols=71 Identities=24% Similarity=0.373 Sum_probs=44.0
Q ss_pred CCCEEEccCCcCCCCCchhhhc---CCCeeeeecCcccccCCCCCCCCCCCccceecccCCCCCCCCcccccccCCCCCC
Q 005361 331 KTNFMYLTGNKLTGPVPKYIFN---SNKNVDISLNNFTWESSDPIECPRGSVNLVESYSSPRNKLDKVHPCLRQNFPCSA 407 (700)
Q Consensus 331 ~L~~L~L~~N~l~~~ip~~~~~---~l~~L~ls~N~l~~~~p~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 407 (700)
+|+.|+|++|+|+ .+|...+. +++.|+|++| +|.|+|...|+..|+........ ...+.|..
T Consensus 32 ~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N--------P~~CdC~l~~l~~wl~~~~~~~~------~~~~~C~~ 96 (130)
T 3rfe_A 32 DTTELVLTGNNLT-ALPPGLLDALPALRTAHLGAN--------PWRCDCRLVPLRAWLAGRPERAP------YRDLRCVA 96 (130)
T ss_dssp TCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSS--------CCBCSGGGHHHHHHHHTSSCSGG------GTTCBCCB
T ss_pred CCCEEECCCCcCC-ccChhhhhhccccCEEEecCC--------CeeccCccHHHHHHHHhCccccc------ccCcEeCc
Confidence 3444555555544 33333322 3455666666 56699999999999986643321 35788999
Q ss_pred CCCCcceee
Q 005361 408 PADQYHYTL 416 (700)
Q Consensus 408 p~~~~~~~~ 416 (700)
|....+..+
T Consensus 97 P~~l~g~~l 105 (130)
T 3rfe_A 97 PPALRGRLL 105 (130)
T ss_dssp STTTTTCBG
T ss_pred ChHHcCCCc
Confidence 887766543
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.20 E-value=4.9e-07 Score=85.19 Aligned_cols=115 Identities=16% Similarity=0.184 Sum_probs=61.3
Q ss_pred hhhCCCCCcEEEeecC-cCCCC----ChhhhcCCCcccEEEccCCCCCCC----chhhhhcCCCCCEEEcCCCCCCCCcc
Q 005361 206 ELTKLTNLNDLRISDN-NFSGK----IPEFIGKWKKIQKLHIQGSSLEGP----IPASISALTSLTDLRISDLKGSESAF 276 (700)
Q Consensus 206 ~~~~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~ 276 (700)
.+...++|++|+|++| .+... +...+...++|++|+|++|.+... +...+...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n------------------ 92 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVN------------------ 92 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHC------------------
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhC------------------
Confidence 3445566666666666 55421 223344445566666666555431 11222222
Q ss_pred cccCccCccEEEcccCCCCCC----CchhhcCCCCCCEEec--cCCCCCCC----ChhhHhcCCCCCEEEccCCcCC
Q 005361 277 PKLDKMNLKTLILTKCLIHGE----IPDYIGDMTKLKNIDL--SFNNLTGG----IPTTFEKLAKTNFMYLTGNKLT 343 (700)
Q Consensus 277 ~~l~~~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L--s~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~ 343 (700)
.+|++|+|++|.|+.. +...+...++|++|+| ++|.|... +...+...++|+.|+|++|.+.
T Consensus 93 -----~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 93 -----NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp -----SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred -----CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3445555555555432 2344555567777777 66777632 2334555677777777777764
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.10 E-value=7.8e-07 Score=83.78 Aligned_cols=63 Identities=21% Similarity=0.248 Sum_probs=27.3
Q ss_pred CCCccEEEeeecCCCCc----CchhhhCCCCCcEEEeecCcCCCC----ChhhhcCCCcccEEEc--cCCCCC
Q 005361 186 LINLQKLILSSNSFTGE----LPAELTKLTNLNDLRISDNNFSGK----IPEFIGKWKKIQKLHI--QGSSLE 248 (700)
Q Consensus 186 l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L--~~n~l~ 248 (700)
.++|++|+|++|.+... +...+...++|++|+|++|.+... +...+...+.|++|+| ++|.+.
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 34444444444444321 122333344455555555554421 2233334444555555 445444
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.08 E-value=3.3e-07 Score=90.93 Aligned_cols=41 Identities=29% Similarity=0.368 Sum_probs=22.9
Q ss_pred CCCCCCEEEccCCcCCC--CCCccccCCCCccEEEeeecCCCC
Q 005361 161 NITTLKNLSIEGNLFTG--SIPPDIRKLINLQKLILSSNSFTG 201 (700)
Q Consensus 161 ~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~ 201 (700)
++++|+.|+|++|++++ .+|..+..+++|+.|+|++|.+++
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence 45666666666666664 223344455555555555555553
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.03 E-value=4.9e-05 Score=80.18 Aligned_cols=248 Identities=15% Similarity=0.097 Sum_probs=158.4
Q ss_pred CcEEEEEecCCCCCCcCchhhcCCCCCCEEECcCCCCCCCcccccccccccEEEccCCCCCCCCchhcCCCCCCCEEEcc
Q 005361 92 CHVVTIALKAQNLTGTLPTELSKLRYLKQLDLSRNCLTGSFSPQWASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIE 171 (700)
Q Consensus 92 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 171 (700)
.+++.+.|..+ ++..-..+|.+. +|+.+.+..+ ++.+...+|....|+.+.+..+- +.+....|.+. +|+.+.+.
T Consensus 69 ~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L~~i~lp~~~-~~i~~~~F~~~-~l~~~~~~ 143 (379)
T 4h09_A 69 YNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDLDDFEFPGAT-TEIGNYIFYNS-SVKRIVIP 143 (379)
T ss_dssp TTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCCSEEECCTTC-CEECTTTTTTC-CCCEEEEC
T ss_pred CCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccCCcccccCCCcc-ccccccccccc-eeeeeecc
Confidence 36888888643 665556677776 5777776533 44344455555457777776542 21222333332 44444443
Q ss_pred CCcCCCCCCccccCCCCccEEEeeecC-----------------------------------CCCcCchhhhCCCCCcEE
Q 005361 172 GNLFTGSIPPDIRKLINLQKLILSSNS-----------------------------------FTGELPAELTKLTNLNDL 216 (700)
Q Consensus 172 ~n~l~~~~p~~~~~l~~L~~L~L~~n~-----------------------------------l~~~~~~~~~~l~~L~~L 216 (700)
.+ ++......|..+.+|+.+.+..+. ........+....+|+.+
T Consensus 144 ~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i 222 (379)
T 4h09_A 144 KS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKI 222 (379)
T ss_dssp TT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEE
T ss_pred ce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeEEeeccccccccccee
Confidence 32 221223334444444444332211 111233456677889998
Q ss_pred EeecCcCCCCChhhhcCCCcccEEEccCCCCCCCchhhhhcCCCCCEEEcCCCCCCCCcccccCc-cCccEEEcccCCCC
Q 005361 217 RISDNNFSGKIPEFIGKWKKIQKLHIQGSSLEGPIPASISALTSLTDLRISDLKGSESAFPKLDK-MNLKTLILTKCLIH 295 (700)
Q Consensus 217 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~L~~L~L~~n~l~ 295 (700)
.+..+ +.......+..+..|+.+.+..+ ++..-...|.++.+|+.+.+.. .+.......+.. .+|+.+.+.++.++
T Consensus 223 ~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~ 299 (379)
T 4h09_A 223 TITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIE 299 (379)
T ss_dssp ECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCC
T ss_pred eeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccccccccccc
Confidence 88654 33344567788899999999765 5545566788999999999875 344444444555 89999999999898
Q ss_pred CCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCCCCCchhhh
Q 005361 296 GEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLTGPVPKYIF 351 (700)
Q Consensus 296 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~ 351 (700)
.+....|.++.+|+.+.|..+ ++.+...+|.++.+|+.+.+..+ ++ .|....|
T Consensus 300 ~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~-~I~~~aF 352 (379)
T 4h09_A 300 TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-IT-LIESGAF 352 (379)
T ss_dssp EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTTTT
T ss_pred eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cC-EEchhHh
Confidence 777789999999999999865 66566778999999999998765 44 4544444
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.98 E-value=6.5e-06 Score=81.59 Aligned_cols=63 Identities=24% Similarity=0.359 Sum_probs=41.7
Q ss_pred CccEEEcccCCCCC--CCchhhcCCCCCCEEeccCCCCCCCChhhHhcCC--CCCEEEccCCcCCCCCc
Q 005361 283 NLKTLILTKCLIHG--EIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLA--KTNFMYLTGNKLTGPVP 347 (700)
Q Consensus 283 ~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~ip 347 (700)
+|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+++.+|
T Consensus 171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 45555555666665 3345566778888888888888754 2334444 78888888888877665
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.66 E-value=5.6e-05 Score=69.43 Aligned_cols=82 Identities=13% Similarity=0.172 Sum_probs=33.1
Q ss_pred CccEEEeeecCCCCcCchhhhCCCCCcEEEeecCc-CCCCChhhhcCC----CcccEEEccCCC-CCCCchhhhhcCCCC
Q 005361 188 NLQKLILSSNSFTGELPAELTKLTNLNDLRISDNN-FSGKIPEFIGKW----KKIQKLHIQGSS-LEGPIPASISALTSL 261 (700)
Q Consensus 188 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~L 261 (700)
+|+.||++++.++..--..+..+++|++|+|++|. +++.--..+..+ ++|++|+|++|. ++..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 34444444444433222333444444444444442 332222223322 245555555442 333222334444555
Q ss_pred CEEEcCCC
Q 005361 262 TDLRISDL 269 (700)
Q Consensus 262 ~~L~l~~n 269 (700)
+.|+++++
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55554443
No 162
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.56 E-value=4.1e-05 Score=70.36 Aligned_cols=86 Identities=10% Similarity=0.085 Sum_probs=55.2
Q ss_pred ccccccEEEccCCCCCCCCchhcCCCCCCCEEEccCCc-CCCCCCccccCC----CCccEEEeeecC-CCCcCchhhhCC
Q 005361 137 ASLQLVELSVMGNRLSGPFPKVLTNITTLKNLSIEGNL-FTGSIPPDIRKL----INLQKLILSSNS-FTGELPAELTKL 210 (700)
Q Consensus 137 ~~l~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~l 210 (700)
..+.|+.||++++.++..--..+.++++|++|+|++|. ++..--..+..+ ++|++|+|++|. ++..--..+..+
T Consensus 59 ~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 59 DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp TCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred CCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 44568999999988876555556788888888888875 442111223332 357777777764 554333445666
Q ss_pred CCCcEEEeecCc
Q 005361 211 TNLNDLRISDNN 222 (700)
Q Consensus 211 ~~L~~L~L~~n~ 222 (700)
++|++|+|+++.
T Consensus 139 ~~L~~L~L~~c~ 150 (176)
T 3e4g_A 139 RNLKYLFLSDLP 150 (176)
T ss_dssp TTCCEEEEESCT
T ss_pred CCCCEEECCCCC
Confidence 777777777664
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.57 E-value=0.0011 Score=61.90 Aligned_cols=61 Identities=7% Similarity=-0.019 Sum_probs=28.6
Q ss_pred cCccEEEcccCCCCCC----CchhhcCCCCCCEEeccCCCC---CC----CChhhHhcCCCCCEEEccCCcC
Q 005361 282 MNLKTLILTKCLIHGE----IPDYIGDMTKLKNIDLSFNNL---TG----GIPTTFEKLAKTNFMYLTGNKL 342 (700)
Q Consensus 282 ~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l---~~----~~p~~~~~l~~L~~L~L~~N~l 342 (700)
..|+.|+|++|.|+.. +-..+..-+.|++|+|++|.. .. .+-..+..-+.|+.|+++.|.+
T Consensus 98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 3455555555555421 222333345566666665422 21 1223445556666666665543
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.23 E-value=0.0023 Score=59.77 Aligned_cols=38 Identities=11% Similarity=0.209 Sum_probs=21.7
Q ss_pred cCccEEEcccC---CCCC----CCchhhcCCCCCCEEeccCCCCC
Q 005361 282 MNLKTLILTKC---LIHG----EIPDYIGDMTKLKNIDLSFNNLT 319 (700)
Q Consensus 282 ~~L~~L~L~~n---~l~~----~~p~~~~~l~~L~~L~Ls~N~l~ 319 (700)
..|++|+|++| .+.. .+...+..-++|+.|+|+.|.+.
T Consensus 126 ~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 126 QSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp CCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred CceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 45666666544 2221 12334555578888888877653
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.76 E-value=0.019 Score=49.92 Aligned_cols=56 Identities=18% Similarity=0.128 Sum_probs=39.2
Q ss_pred EEEcccCCCC-CCCchhhcCCCCCCEEeccCCCCCCCChhhHhcCCCCCEEEccCCcCC
Q 005361 286 TLILTKCLIH-GEIPDYIGDMTKLKNIDLSFNNLTGGIPTTFEKLAKTNFMYLTGNKLT 343 (700)
Q Consensus 286 ~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 343 (700)
.++.+++.++ ..+|..+ .++|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4566666665 2334322 246888888888888777777888888888888888775
No 166
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=93.53 E-value=0.0082 Score=61.25 Aligned_cols=34 Identities=41% Similarity=0.562 Sum_probs=28.8
Q ss_pred CccHHHHHHHHcCCCcCCccccCCCcceeEEEeC
Q 005361 665 LYTLRQIKAATNNFDPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 665 ~f~~~el~~AT~~Fs~~~~iG~GgfG~VYkg~L~ 698 (700)
++++.++..++++|....+||+||||.||+|+..
T Consensus 28 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~ 61 (321)
T 2qkw_B 28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLR 61 (321)
T ss_dssp --CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECT
T ss_pred eecHHHHHHHHhccCccceeecCCCeeEEEEEEC
Confidence 4666777889999999999999999999999864
No 167
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=92.19 E-value=0.041 Score=55.57 Aligned_cols=18 Identities=39% Similarity=0.820 Sum_probs=16.2
Q ss_pred CCccccCCCcceeEEEeC
Q 005361 681 ANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 681 ~~~iG~GgfG~VYkg~L~ 698 (700)
.++||+||||+||||++.
T Consensus 41 ~~~iG~G~fG~Vy~~~~~ 58 (307)
T 3omv_A 41 STRIGSGSFGTVYKGKWH 58 (307)
T ss_dssp EEECCCCSSSEEEEEESS
T ss_pred eeEEeeCCCcEEEEEEEC
Confidence 678999999999999875
No 168
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=91.02 E-value=0.0096 Score=60.48 Aligned_cols=23 Identities=30% Similarity=0.749 Sum_probs=20.1
Q ss_pred cCCCcCCccccCCCcceeEEEeC
Q 005361 676 NNFDPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 676 ~~Fs~~~~iG~GgfG~VYkg~L~ 698 (700)
++|....+||+||||+||+|...
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~ 79 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSK 79 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEET
T ss_pred hheeeeheeccCCCeEEEEEEEC
Confidence 56877889999999999999864
No 169
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=90.80 E-value=0.045 Score=55.92 Aligned_cols=19 Identities=32% Similarity=0.594 Sum_probs=16.4
Q ss_pred cCCccccCCCcceeEEEeC
Q 005361 680 PANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 680 ~~~~iG~GgfG~VYkg~L~ 698 (700)
-..+||+||||+||||.+.
T Consensus 45 l~~~LG~G~fG~Vy~a~~~ 63 (329)
T 4aoj_A 45 LKWELGEGAFGKVFLAECH 63 (329)
T ss_dssp EEEEEEECSSEEEEEEEES
T ss_pred EEEEEccCCCcEEEEEEEC
Confidence 3678999999999999864
No 170
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=89.93 E-value=0.04 Score=58.85 Aligned_cols=33 Identities=24% Similarity=0.522 Sum_probs=29.7
Q ss_pred ccHHHHHHHHcCCCcCCccccCCCcceeEEEeC
Q 005361 666 YTLRQIKAATNNFDPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 666 f~~~el~~AT~~Fs~~~~iG~GgfG~VYkg~L~ 698 (700)
+.+++++.++++|...++||+||||+||+|...
T Consensus 64 ~~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~ 96 (437)
T 4aw2_A 64 SKVKQMRLHREDFEILKVIGRGAFGEVAVVKLK 96 (437)
T ss_dssp HHHHHHSCCGGGEEEEEEEEECSSEEEEEEEET
T ss_pred chhhcccCChhheEEEEEEEeCCCEEEEEEEEc
Confidence 567888889999999999999999999999864
No 171
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=87.56 E-value=0.16 Score=51.72 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=16.7
Q ss_pred CccHHHHHHHHcCCCcC---------CccccCCCcceeEEEe
Q 005361 665 LYTLRQIKAATNNFDPA---------NKVGEGGFGSVYKVNV 697 (700)
Q Consensus 665 ~f~~~el~~AT~~Fs~~---------~~iG~GgfG~VYkg~L 697 (700)
..++.+...++..|..+ .+||+||||.||+|..
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~y~i~~~lG~G~~g~V~~~~~ 70 (325)
T 3kul_A 29 PHTYEEPGRAGRSFTREIEASRIHIEKIIGSGDSGEVCYGRL 70 (325)
T ss_dssp --------------CCBCCGGGEEEEEEEEETTTEEEEEEEE
T ss_pred cccccCccccchhhccccChhHeEEeeEEEeCCCcEEEEEEE
Confidence 46788888888888654 7899999999999986
No 172
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=84.79 E-value=0.17 Score=52.13 Aligned_cols=21 Identities=24% Similarity=0.591 Sum_probs=16.9
Q ss_pred CCCcCCccccCCCcceeEEEe
Q 005361 677 NFDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 677 ~Fs~~~~iG~GgfG~VYkg~L 697 (700)
+|.-.++||+|+||+||||..
T Consensus 65 ~~~l~~~LG~G~fG~Vy~a~~ 85 (353)
T 4ase_A 65 RLKLGKPLGRGAFGQVIEADA 85 (353)
T ss_dssp GEEEEEEEEECSSEEEEEEEE
T ss_pred HeEEeeEEecCCCeEEEEEEE
Confidence 343457899999999999975
No 173
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=84.60 E-value=0.13 Score=54.25 Aligned_cols=34 Identities=21% Similarity=0.503 Sum_probs=29.7
Q ss_pred CccHHHHHHHHcCCCcCCccccCCCcceeEEEeC
Q 005361 665 LYTLRQIKAATNNFDPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 665 ~f~~~el~~AT~~Fs~~~~iG~GgfG~VYkg~L~ 698 (700)
.+.+++++..+++|...++||+||||+||++...
T Consensus 50 ~~~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~ 83 (412)
T 2vd5_A 50 VVRLKEVRLQRDDFEILKVIGRGAFSEVAVVKMK 83 (412)
T ss_dssp HHHHHHHSCCGGGEEEEEEEEECSSCEEEEEEET
T ss_pred hhhhhhccCChhhEEEEEEEeeCCCeEEEEEEEC
Confidence 3677888888999999999999999999999753
No 174
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=82.93 E-value=0.18 Score=51.45 Aligned_cols=22 Identities=27% Similarity=0.521 Sum_probs=17.4
Q ss_pred cCCCcCCccccCCCcceeEEEe
Q 005361 676 NNFDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 676 ~~Fs~~~~iG~GgfG~VYkg~L 697 (700)
+.|....+||+||||+||+|+-
T Consensus 58 ~~~~~~~~lG~G~fG~Vy~a~~ 79 (336)
T 4g3f_A 58 HWMTHQPRVGRGSFGEVHRMKD 79 (336)
T ss_dssp TEEEEEEEEEEETTEEEEEEEE
T ss_pred hheEeCcEeccCCCeEEEEEEE
Confidence 3454566899999999999973
No 175
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=82.13 E-value=0.2 Score=52.85 Aligned_cols=33 Identities=21% Similarity=0.519 Sum_probs=27.7
Q ss_pred ccHHHHHHHHcCCCcCCccccCCCcceeEEEeC
Q 005361 666 YTLRQIKAATNNFDPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 666 f~~~el~~AT~~Fs~~~~iG~GgfG~VYkg~L~ 698 (700)
..+++++.++++|....+||+||||+||++...
T Consensus 59 ~~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~ 91 (410)
T 3v8s_A 59 NKIRDLRMKAEDYEVVKVIGRGAFGEVQLVRHK 91 (410)
T ss_dssp HHHHHHSCCGGGEEEEEEEEECSSEEEEEEEET
T ss_pred HHHHhcccCccccEEEEEEEcCCCEEEEEEEEC
Confidence 345677778899998999999999999999754
No 176
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=80.72 E-value=0.35 Score=49.54 Aligned_cols=20 Identities=40% Similarity=0.527 Sum_probs=16.3
Q ss_pred CCcCCccccCCCcceeEEEe
Q 005361 678 FDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 678 Fs~~~~iG~GgfG~VYkg~L 697 (700)
|..-.+||+|+||+||+|+-
T Consensus 76 y~~~~~iG~G~fG~V~~a~~ 95 (346)
T 4fih_A 76 LDNFIKIGEGSTGIVCIATV 95 (346)
T ss_dssp EEEEEEEEECSSCEEEEEEE
T ss_pred cEEeEEeecCcCeEEEEEEE
Confidence 44456799999999999974
No 177
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=78.76 E-value=0.49 Score=49.07 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=18.7
Q ss_pred cCCCcCCccccCCCcceeEEEeC
Q 005361 676 NNFDPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 676 ~~Fs~~~~iG~GgfG~VYkg~L~ 698 (700)
++|....+||+||||.||+|...
T Consensus 45 ~~~~~~~~lG~G~fg~Vy~~~~~ 67 (373)
T 2qol_A 45 TNISIDKVVGAGEFGEVCSGRLK 67 (373)
T ss_dssp GGCCCCEEEEECSSSEEEEC-CB
T ss_pred hhceeeeEEeeCCCeEEEEEEEe
Confidence 46677889999999999999753
No 178
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=78.75 E-value=0.29 Score=51.67 Aligned_cols=23 Identities=4% Similarity=-0.013 Sum_probs=18.7
Q ss_pred HcCCCcCCccccCCCcceeEEEe
Q 005361 675 TNNFDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 675 T~~Fs~~~~iG~GgfG~VYkg~L 697 (700)
+.+|...++||+||||.||+|+-
T Consensus 77 ~~~~~~~~~LG~G~fG~Vy~a~~ 99 (413)
T 3dzo_A 77 PRTLVRGTVLGQEDPYAYLEATD 99 (413)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEE
T ss_pred ceeEEEecccccCCCEEEEEEEe
Confidence 44555578999999999999983
No 179
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=77.24 E-value=0.51 Score=49.67 Aligned_cols=21 Identities=38% Similarity=0.480 Sum_probs=17.2
Q ss_pred CCCcCCccccCCCcceeEEEe
Q 005361 677 NFDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 677 ~Fs~~~~iG~GgfG~VYkg~L 697 (700)
.|..-.+||+|+||+||+|+-
T Consensus 152 ~y~~~~~iG~G~fG~V~~a~~ 172 (423)
T 4fie_A 152 YLDNFIKIGEGSTGIVCIATV 172 (423)
T ss_dssp TEEEEEEEEECSSCEEEEEEE
T ss_pred hcEeeeEeccCcCcEEEEEEE
Confidence 355567899999999999974
No 180
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=77.06 E-value=0.72 Score=46.25 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=17.6
Q ss_pred CCCcCCccccCCCcceeEEEeC
Q 005361 677 NFDPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 677 ~Fs~~~~iG~GgfG~VYkg~L~ 698 (700)
.|.-..+||+||||.||+|...
T Consensus 37 ~~~~~~~lG~G~~g~Vy~~~~~ 58 (307)
T 3lb7_A 37 EVMLSTRIGSGSFGTVYKGKWH 58 (307)
T ss_dssp SCCEEEEEEECSSCEEEEEESS
T ss_pred ceEEEeEecCCCCeEEEEEEEC
Confidence 3444679999999999999753
No 181
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=76.81 E-value=0.53 Score=49.33 Aligned_cols=19 Identities=21% Similarity=0.629 Sum_probs=16.1
Q ss_pred CCcCCccccCCCcceeEEE
Q 005361 678 FDPANKVGEGGFGSVYKVN 696 (700)
Q Consensus 678 Fs~~~~iG~GgfG~VYkg~ 696 (700)
|.--.+||+|+||+||+++
T Consensus 56 Y~~~~~lG~G~fG~V~~a~ 74 (398)
T 4b99_A 56 YEIIETIGNGAYGVVSSAR 74 (398)
T ss_dssp EEEEEEEEECSSCEEEEEE
T ss_pred eEEEEEEecccCeEEEEEE
Confidence 4445799999999999996
No 182
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=76.05 E-value=0.43 Score=49.27 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=18.4
Q ss_pred HcCCCcCCccccCCCcceeEEE
Q 005361 675 TNNFDPANKVGEGGFGSVYKVN 696 (700)
Q Consensus 675 T~~Fs~~~~iG~GgfG~VYkg~ 696 (700)
.+.|....+||+||||+||+|+
T Consensus 64 ~~~y~~~~~lG~G~~g~Vy~~~ 85 (365)
T 3e7e_A 64 SKLVYVHHLLGEGAFAQVYEAT 85 (365)
T ss_dssp SSEEEEEEEEEECSSEEEEEEE
T ss_pred CEEEEEEEEeeccCCEEEEEEE
Confidence 4556667899999999999995
No 183
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=74.07 E-value=0.76 Score=47.47 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=17.6
Q ss_pred CCCcCCccccCCCcceeEEEeC
Q 005361 677 NFDPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 677 ~Fs~~~~iG~GgfG~VYkg~L~ 698 (700)
+|.-..+||+||||+||+|...
T Consensus 72 ~~~~~~~LG~G~fg~Vy~~~~~ 93 (367)
T 3l9p_A 72 NITLIRGLGHGAFGEVYEGQVS 93 (367)
T ss_dssp GEEEEEECCCCSSSCEEEEEEC
T ss_pred HeEEeeEeeeCCCEEEEEEEEc
Confidence 3444678999999999999853
No 184
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=72.65 E-value=0.76 Score=47.06 Aligned_cols=24 Identities=21% Similarity=0.483 Sum_probs=20.0
Q ss_pred HcCCCcCCccccCCCcceeEEEeC
Q 005361 675 TNNFDPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 675 T~~Fs~~~~iG~GgfG~VYkg~L~ 698 (700)
++.|....+||+||||.||+|...
T Consensus 52 ~~~y~~~~~lG~G~~g~Vy~~~~~ 75 (349)
T 2w4o_A 52 SDFFEVESELGRGATSIVYRCKQK 75 (349)
T ss_dssp GGTEEEEEEEEECSSEEEEEEEET
T ss_pred cCcEEEeeEEeeCCCEEEEEEEEC
Confidence 456666789999999999999864
No 185
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=72.24 E-value=0.7 Score=51.58 Aligned_cols=22 Identities=41% Similarity=0.832 Sum_probs=19.1
Q ss_pred cCCCcCCccccCCCcceeEEEe
Q 005361 676 NNFDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 676 ~~Fs~~~~iG~GgfG~VYkg~L 697 (700)
++|.--.+||+||||+||++.-
T Consensus 189 ddf~i~k~LG~G~fG~V~la~~ 210 (689)
T 3v5w_A 189 NDFSVHRIIGRGGFGEVYGCRK 210 (689)
T ss_dssp GGEEEEEEEEECSSEEEEEEEE
T ss_pred HHeEEEEEEecccCeEEEEEEE
Confidence 5677778999999999999874
No 186
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=71.86 E-value=0.86 Score=46.24 Aligned_cols=18 Identities=39% Similarity=0.704 Sum_probs=15.8
Q ss_pred cCCccccCCCcceeEEEe
Q 005361 680 PANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 680 ~~~~iG~GgfG~VYkg~L 697 (700)
...+||+||||.||+|..
T Consensus 48 ~~~~lG~G~~g~Vy~~~~ 65 (333)
T 1mqb_A 48 RQKVIGAGEFGEVYKGML 65 (333)
T ss_dssp EEEEEEECSSSEEEEEEE
T ss_pred cccEEecCCCeEEEEEEE
Confidence 357899999999999975
No 187
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=71.78 E-value=0.81 Score=45.94 Aligned_cols=22 Identities=27% Similarity=0.604 Sum_probs=18.0
Q ss_pred cCCCcCCccccCCCcceeEEEe
Q 005361 676 NNFDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 676 ~~Fs~~~~iG~GgfG~VYkg~L 697 (700)
++|.-..+||+||||+||+|..
T Consensus 37 ~~y~i~~~lG~G~~g~V~~~~~ 58 (309)
T 3p86_A 37 CDLNIKEKIGAGSFGTVHRAEW 58 (309)
T ss_dssp GGEEEEEEEEECSSEEEEEEEE
T ss_pred hHceeeeEeecCCCeEEEEEEE
Confidence 3455578999999999999975
No 188
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=70.71 E-value=1.3 Score=45.94 Aligned_cols=17 Identities=35% Similarity=0.759 Sum_probs=15.2
Q ss_pred CCccccCCCcceeEEEe
Q 005361 681 ANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 681 ~~~iG~GgfG~VYkg~L 697 (700)
..+||+|+||+||+|..
T Consensus 94 ~~~LG~G~fg~Vy~~~~ 110 (373)
T 3c1x_A 94 NEVIGRGHFGCVYHGTL 110 (373)
T ss_dssp EEEEECCSSSEEEEEEE
T ss_pred CcEeeeCCCeEEEEEEE
Confidence 46899999999999985
No 189
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=69.98 E-value=1.2 Score=46.00 Aligned_cols=32 Identities=19% Similarity=0.253 Sum_probs=25.9
Q ss_pred cHHHHHHHHcCCCcCCccccCCCcceeEEEeC
Q 005361 667 TLRQIKAATNNFDPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 667 ~~~el~~AT~~Fs~~~~iG~GgfG~VYkg~L~ 698 (700)
.+.......++|.....||+|+||.||+++..
T Consensus 85 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~ 116 (365)
T 2y7j_A 85 DWAAAKEFYQKYDPKDVIGRGVSSVVRRCVHR 116 (365)
T ss_dssp HHHHHHHHHHHEEEEEEEEECSSEEEEEEEET
T ss_pred cchhhhhhhhhcccceEEecCCCEEEEEEEEC
Confidence 44555666778888899999999999999864
No 190
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=69.73 E-value=1.3 Score=46.54 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.0
Q ss_pred HHHcCCCcCCccccCCCcceeEEEe
Q 005361 673 AATNNFDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 673 ~AT~~Fs~~~~iG~GgfG~VYkg~L 697 (700)
...+.|.-..+||+||||+||+|.-
T Consensus 132 ~~~~~y~~~~~LG~G~~g~V~~a~~ 156 (419)
T 3i6u_A 132 ALRDEYIMSKTLGSGACGEVKLAFE 156 (419)
T ss_dssp HHHTTEEEEEEEEECSSSEEEEEEE
T ss_pred hhhccEEEEeEEeeCCCeEEEEEEE
Confidence 3467787788999999999999974
No 191
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=69.64 E-value=0.99 Score=48.16 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=19.0
Q ss_pred cCCCcCCccccCCCcceeEEEeC
Q 005361 676 NNFDPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 676 ~~Fs~~~~iG~GgfG~VYkg~L~ 698 (700)
++|.-..+||+|+||.||+|...
T Consensus 188 ~~~~~~~~lG~G~fg~V~~~~~~ 210 (454)
T 1qcf_A 188 ESLKLEKKLGAGQFGEVWMATYN 210 (454)
T ss_dssp GGEEEEEEEECCSSEEEEEEEET
T ss_pred HHeEEEEEcccCCceEEEEEEEC
Confidence 45555789999999999999864
No 192
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=69.36 E-value=0.99 Score=46.66 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=17.5
Q ss_pred cCCCcCCccccCCCcceeEEEe
Q 005361 676 NNFDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 676 ~~Fs~~~~iG~GgfG~VYkg~L 697 (700)
++|.-...||+|+||.||+|..
T Consensus 81 ~~~~~~~~LG~G~fg~Vy~a~~ 102 (370)
T 2psq_A 81 DKLTLGKPLGEGCFGQVVMAEA 102 (370)
T ss_dssp GGEEEEEEESCCSSSEEEEEEE
T ss_pred HHCEeeeEEeeCCCeeEEEEEE
Confidence 3444567899999999999974
No 193
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=69.26 E-value=0.86 Score=47.31 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=22.3
Q ss_pred HHHHHHcCCCcCCccccCCCcceeEEEe
Q 005361 670 QIKAATNNFDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 670 el~~AT~~Fs~~~~iG~GgfG~VYkg~L 697 (700)
+-...+++|....+||+|+||+||+|.-
T Consensus 48 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~ 75 (382)
T 2vx3_A 48 NGEKWMDRYEIDSLIGKGSFGQVVKAYD 75 (382)
T ss_dssp TTCEETTTEEEEEEEEEETTEEEEEEEE
T ss_pred cCCEeeeeEEEEEEEeecCCEEEEEEEE
Confidence 3344567787788999999999999974
No 194
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=68.54 E-value=1 Score=45.56 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=19.6
Q ss_pred HcCCCcCCccccCCCcceeEEEe
Q 005361 675 TNNFDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 675 T~~Fs~~~~iG~GgfG~VYkg~L 697 (700)
.++|.-...||+||||.||+|..
T Consensus 45 ~~~~~~~~~lG~G~~g~Vy~~~~ 67 (333)
T 2i1m_A 45 RNNLQFGKTLGAGAFGKVVEATA 67 (333)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEE
T ss_pred HHHceeeeEeccCCCcceEEEEe
Confidence 46677778999999999999974
No 195
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=68.44 E-value=1.1 Score=45.33 Aligned_cols=25 Identities=32% Similarity=0.682 Sum_probs=20.6
Q ss_pred HHcCCCcCCccccCCCcceeEEEeC
Q 005361 674 ATNNFDPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 674 AT~~Fs~~~~iG~GgfG~VYkg~L~ 698 (700)
..++|.....||+|+||.||+|...
T Consensus 45 ~~~~~~~~~~lg~G~~g~Vy~~~~~ 69 (343)
T 1luf_A 45 PRNNIEYVRDIGEGAFGRVFQARAP 69 (343)
T ss_dssp CGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred cHHHCeeeeeeeecCCeeEEEEEec
Confidence 4566767789999999999999763
No 196
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=67.90 E-value=1.1 Score=46.86 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=19.1
Q ss_pred cCCCcCCccccCCCcceeEEEeC
Q 005361 676 NNFDPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 676 ~~Fs~~~~iG~GgfG~VYkg~L~ 698 (700)
++|.-..+||+||||+||++...
T Consensus 52 ~~y~~~~~LG~G~fG~V~~~~~~ 74 (396)
T 4dc2_A 52 QDFDLLRVIGRGSYAKVLLVRLK 74 (396)
T ss_dssp GGEEEEEEEEECSSEEEEEEEET
T ss_pred hHcEEEEEEeeCCCeEEEEEEEC
Confidence 45666789999999999999754
No 197
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=67.34 E-value=1 Score=46.14 Aligned_cols=22 Identities=32% Similarity=0.691 Sum_probs=18.5
Q ss_pred cCCCcCCccccCCCcceeEEEe
Q 005361 676 NNFDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 676 ~~Fs~~~~iG~GgfG~VYkg~L 697 (700)
++|...++||+||||.||++..
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~~~~ 75 (355)
T 1vzo_A 54 ENFELLKVLGTGAYGKVFLVRK 75 (355)
T ss_dssp GGEEEEEEEEETTTEEEEEEEE
T ss_pred cceEEEEEeccCCCEEEEEEEE
Confidence 4566678999999999999875
No 198
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=67.20 E-value=1.3 Score=44.62 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=18.0
Q ss_pred cCCCcCCccccCCCcceeEEEe
Q 005361 676 NNFDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 676 ~~Fs~~~~iG~GgfG~VYkg~L 697 (700)
+.|....+||+||||.||+|+-
T Consensus 43 ~~y~~~~~lg~G~~g~Vy~~~~ 64 (320)
T 3a99_A 43 SQYQVGPLLGSGGFGSVYSGIR 64 (320)
T ss_dssp TTEEEEEECSSSSSCEEEEEEE
T ss_pred CceEEEEEEeeCCCeEEEEEEE
Confidence 4455578999999999999974
No 199
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=66.96 E-value=0.96 Score=46.29 Aligned_cols=22 Identities=32% Similarity=0.638 Sum_probs=18.1
Q ss_pred cCCCcCCccccCCCcceeEEEe
Q 005361 676 NNFDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 676 ~~Fs~~~~iG~GgfG~VYkg~L 697 (700)
+.|...+.||+|+||+||+|.-
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~a~~ 75 (348)
T 1u5q_A 54 KLFSDLREIGHGSFGAVYFARD 75 (348)
T ss_dssp HHEEEEEEEEECSSEEEEEEEE
T ss_pred hheeeeeEEccCCCEEEEEEEE
Confidence 3466678999999999999973
No 200
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=66.88 E-value=1.1 Score=45.09 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=17.1
Q ss_pred CCcCCccccCCCcceeEEEeC
Q 005361 678 FDPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 678 Fs~~~~iG~GgfG~VYkg~L~ 698 (700)
|+...+||+||||.||+|...
T Consensus 47 ~~~~~~lg~G~~g~V~~a~~~ 67 (321)
T 2c30_A 47 LDSYVKIGEGSTGIVCLAREK 67 (321)
T ss_dssp EEEEEEEEEETTEEEEEEEET
T ss_pred hhccEEeccCCCeEEEEEEEC
Confidence 344568999999999999864
No 201
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=66.34 E-value=1.2 Score=45.15 Aligned_cols=22 Identities=27% Similarity=0.687 Sum_probs=17.8
Q ss_pred cCCCcCCccccCCCcceeEEEe
Q 005361 676 NNFDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 676 ~~Fs~~~~iG~GgfG~VYkg~L 697 (700)
++|.....||+|+||.||+|.-
T Consensus 51 ~~~~~~~~lG~G~~g~Vy~~~~ 72 (340)
T 3an0_A 51 DDLEPIMELGRGAYGVVEKMRH 72 (340)
T ss_dssp SCEEEEEEEEECSSEEEEEEEE
T ss_pred hheeEeeEecccCCEEEEEEEE
Confidence 3455567899999999999974
No 202
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=66.20 E-value=1.3 Score=46.73 Aligned_cols=20 Identities=30% Similarity=0.728 Sum_probs=16.8
Q ss_pred CcCCccccCCCcceeEEEeC
Q 005361 679 DPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 679 s~~~~iG~GgfG~VYkg~L~ 698 (700)
...++||+|+||.||+|+..
T Consensus 57 ~~~~~lG~G~fg~Vy~~~~~ 76 (420)
T 1j1b_A 57 TDTKVIGNGSFGVVYQAKLC 76 (420)
T ss_dssp EEEEEEEECSSEEEEEEEET
T ss_pred EeeeEEeeCCCEEEEEEEEC
Confidence 34678999999999999863
No 203
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=66.05 E-value=1.2 Score=46.52 Aligned_cols=21 Identities=24% Similarity=0.495 Sum_probs=17.5
Q ss_pred CCcCCccccCCCcceeEEEeC
Q 005361 678 FDPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 678 Fs~~~~iG~GgfG~VYkg~L~ 698 (700)
|....+||+||||.||++...
T Consensus 58 y~~~~~LG~G~fg~Vy~~~~~ 78 (390)
T 2zmd_A 58 YSILKQIGSGGSSKVFQVLNE 78 (390)
T ss_dssp EEEEEEEECCSSEEEEEEECT
T ss_pred eEEEEEEccCCCeEEEEEEcC
Confidence 555679999999999999753
No 204
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=65.84 E-value=1.4 Score=47.04 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=18.0
Q ss_pred CCCcCCccccCCCcceeEEEeC
Q 005361 677 NFDPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 677 ~Fs~~~~iG~GgfG~VYkg~L~ 698 (700)
+|.-..+||+|+||.||+|...
T Consensus 185 ~~~~~~~lG~G~fg~Vy~~~~~ 206 (452)
T 1fmk_A 185 SLRLEVKLGQGCFGEVWMGTWN 206 (452)
T ss_dssp GEEEEEEEEECSSCEEEEEEET
T ss_pred HceeeeeecCCCCeEEEEEEEC
Confidence 3444678999999999999865
No 205
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=65.79 E-value=1.3 Score=44.81 Aligned_cols=29 Identities=14% Similarity=0.355 Sum_probs=23.0
Q ss_pred HHHHHHcCCCcCCccccCCCcceeEEEeC
Q 005361 670 QIKAATNNFDPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 670 el~~AT~~Fs~~~~iG~GgfG~VYkg~L~ 698 (700)
.-....+.|....+||+||||.||+|+..
T Consensus 31 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~ 59 (337)
T 3mdy_A 31 VQRTIAKQIQMVKQIGKGRYGEVWMGKWR 59 (337)
T ss_dssp HHTTHHHHCEEEEEEEEETTEEEEEEEET
T ss_pred cccccccceEEEeEeecCCCeEEEEEEEC
Confidence 33445577888899999999999999753
No 206
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=64.82 E-value=1.4 Score=47.69 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=18.2
Q ss_pred CCCcCCccccCCCcceeEEEeC
Q 005361 677 NFDPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 677 ~Fs~~~~iG~GgfG~VYkg~L~ 698 (700)
+|....+||+|+||.||+|+..
T Consensus 221 ~~~~~~~lG~G~fg~Vy~~~~~ 242 (495)
T 1opk_A 221 DITMKHKLGGGQYGEVYEGVWK 242 (495)
T ss_dssp GEEEEEESGGGTTSSEEEEEEG
T ss_pred HceeeeEecCCCCeEEEEEEEc
Confidence 3455789999999999999864
No 207
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=64.22 E-value=1.3 Score=45.96 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=16.8
Q ss_pred CCCcCCccccCCCcceeEEEe
Q 005361 677 NFDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 677 ~Fs~~~~iG~GgfG~VYkg~L 697 (700)
.|.-..+||+||||.||+|..
T Consensus 70 ~y~i~~~LG~G~~g~Vy~a~~ 90 (382)
T 3tt0_A 70 RLVLGKPLGEGAFGQVVLAEA 90 (382)
T ss_dssp GEEEEEEEEECSSEEEEEEEE
T ss_pred heEeeeEEecCCCeEEEEEEE
Confidence 333467899999999999974
No 208
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=64.00 E-value=1.6 Score=48.69 Aligned_cols=16 Identities=38% Similarity=0.655 Sum_probs=14.2
Q ss_pred CccccCCCcceeEEEe
Q 005361 682 NKVGEGGFGSVYKVNV 697 (700)
Q Consensus 682 ~~iG~GgfG~VYkg~L 697 (700)
++||+||||.||||..
T Consensus 375 ~~LG~G~fG~Vy~~~~ 390 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYY 390 (635)
T ss_dssp EEEEECSSEEEEEEEE
T ss_pred CEeccCCCEEEEEEEE
Confidence 4799999999999964
No 209
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=63.83 E-value=1.6 Score=45.08 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=18.4
Q ss_pred cCCCcCCccccCCCcceeEEEeC
Q 005361 676 NNFDPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 676 ~~Fs~~~~iG~GgfG~VYkg~L~ 698 (700)
++|.-..+||+|+||+||++.-.
T Consensus 38 ~~y~~~~~lG~G~fg~V~~~~~~ 60 (373)
T 2r5t_A 38 SDFHFLKVIGKGSFGKVLLARHK 60 (373)
T ss_dssp GGEEEEEEEECCTTCEEEEEEET
T ss_pred hheEEEEEEeeCCCeEEEEEEEc
Confidence 34555789999999999999753
No 210
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=63.83 E-value=1.9 Score=45.96 Aligned_cols=22 Identities=18% Similarity=0.519 Sum_probs=11.4
Q ss_pred cCCCcCCccccCCCcceeEEEe
Q 005361 676 NNFDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 676 ~~Fs~~~~iG~GgfG~VYkg~L 697 (700)
+.|....+||+|+||+||+|.-
T Consensus 53 ~~y~~~~~lG~G~~g~V~~~~~ 74 (458)
T 3rp9_A 53 DRYEIRHLIGTGSYGHVCEAYD 74 (458)
T ss_dssp TTEEECCC-------CEEEEEE
T ss_pred CCeEEeeEeeecCCeEEEEEEE
Confidence 4566678999999999999963
No 211
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=63.53 E-value=1.3 Score=44.51 Aligned_cols=22 Identities=18% Similarity=0.554 Sum_probs=17.6
Q ss_pred cCCCcCCccccCCCcceeEEEe
Q 005361 676 NNFDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 676 ~~Fs~~~~iG~GgfG~VYkg~L 697 (700)
++|.-..+||+|+||.||+|+-
T Consensus 36 ~~y~~~~~lg~G~~g~V~~~~~ 57 (330)
T 3nsz_A 36 DDYQLVRKLGRGKYSEVFEAIN 57 (330)
T ss_dssp GGEEEEEEEEECSSEEEEEEEE
T ss_pred CceEEEEEecccCCeEEEEEEE
Confidence 3444468999999999999964
No 212
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=63.34 E-value=1.4 Score=44.93 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=11.3
Q ss_pred CCcCCccccCCCcceeEEEeC
Q 005361 678 FDPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 678 Fs~~~~iG~GgfG~VYkg~L~ 698 (700)
|....+||+||||.||+|...
T Consensus 39 y~~~~~lg~G~~g~Vy~~~~~ 59 (345)
T 2v62_A 39 WVLGKKIGSGGFGLIYLAFPT 59 (345)
T ss_dssp EEEEEEC------CEEEEEES
T ss_pred EEEEeeEeecCCeEEEEEEec
Confidence 344679999999999999863
No 213
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=63.26 E-value=1.4 Score=44.79 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=18.7
Q ss_pred cCCCcCCccccCCCcceeEEEe
Q 005361 676 NNFDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 676 ~~Fs~~~~iG~GgfG~VYkg~L 697 (700)
++|.-...||+||||.||+|..
T Consensus 45 ~~y~~~~~lG~G~~g~V~~~~~ 66 (344)
T 1rjb_A 45 ENLEFGKVLGSGAFGKVMNATA 66 (344)
T ss_dssp GGEEEEEEEEECSSEEEEEEEE
T ss_pred HHceeeeeecCCCCceeEEeee
Confidence 5566678999999999999974
No 214
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=62.99 E-value=1.4 Score=45.48 Aligned_cols=21 Identities=24% Similarity=0.577 Sum_probs=17.4
Q ss_pred CCcCCccccCCCcceeEEEeC
Q 005361 678 FDPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 678 Fs~~~~iG~GgfG~VYkg~L~ 698 (700)
|.-..+||+|+||.||+|...
T Consensus 116 ~~~~~~lG~G~~g~V~~~~~~ 136 (377)
T 3cbl_A 116 LVLGEQIGRGNFGEVFSGRLR 136 (377)
T ss_dssp EEEEEEEEEETTEEEEEEEET
T ss_pred eEEeeEeccCCCCeEEEEEEe
Confidence 344678999999999999864
No 215
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=62.89 E-value=1.5 Score=46.26 Aligned_cols=21 Identities=29% Similarity=0.591 Sum_probs=17.2
Q ss_pred CCCcCCccccCCCcceeEEEe
Q 005361 677 NFDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 677 ~Fs~~~~iG~GgfG~VYkg~L 697 (700)
.|....+||+|+||.||+|.-
T Consensus 98 ry~~~~~LG~G~fg~V~~a~~ 118 (429)
T 3kvw_A 98 RYEVLKVIGKGSFGQVVKAYD 118 (429)
T ss_dssp TEEEEEEEEESSSEEEEEEEE
T ss_pred cEEEEEEcccCccEEEEEEEE
Confidence 344567999999999999964
No 216
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=62.79 E-value=1.4 Score=46.05 Aligned_cols=19 Identities=26% Similarity=0.758 Sum_probs=16.3
Q ss_pred cCCccccCCCcceeEEEeC
Q 005361 680 PANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 680 ~~~~iG~GgfG~VYkg~L~ 698 (700)
...+||+||||+||++...
T Consensus 44 ~~~~lG~G~~g~V~~a~~~ 62 (394)
T 4e7w_A 44 NCKVIGNGSFGVVFQAKLV 62 (394)
T ss_dssp EEEEEEEETTEEEEEEEET
T ss_pred EeEEEeeCCCeEEEEEEEC
Confidence 3679999999999999863
No 217
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=62.38 E-value=1.6 Score=45.04 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=10.1
Q ss_pred CCccccCCCcceeEEEe
Q 005361 681 ANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 681 ~~~iG~GgfG~VYkg~L 697 (700)
..+||+|+||.||+|..
T Consensus 94 ~~~lG~G~~g~Vy~a~~ 110 (373)
T 2x4f_A 94 TEILGGGRFGQVHKCEE 110 (373)
T ss_dssp EEECC-----CEEEEEE
T ss_pred ceEEecCcCEEEEEEEE
Confidence 56899999999999975
No 218
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=62.25 E-value=1.6 Score=46.38 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=18.0
Q ss_pred CCCcCCccccCCCcceeEEEeC
Q 005361 677 NFDPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 677 ~Fs~~~~iG~GgfG~VYkg~L~ 698 (700)
+|.-..+||+|+||.||+|...
T Consensus 194 ~~~~~~~lG~G~fg~V~~~~~~ 215 (450)
T 1k9a_A 194 ELKLLQTIGKGEFGDVMLGDYR 215 (450)
T ss_dssp GEEEEEEEEECSSEEEEEEEET
T ss_pred HeEEEeeecCcCCeeEEEEEec
Confidence 4444679999999999999764
No 219
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=61.93 E-value=1.2 Score=46.19 Aligned_cols=22 Identities=5% Similarity=-0.016 Sum_probs=18.1
Q ss_pred cCCCcCCccccCCCcceeEEEe
Q 005361 676 NNFDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 676 ~~Fs~~~~iG~GgfG~VYkg~L 697 (700)
+.|....+||+||||.||+|..
T Consensus 73 ~~y~~~~~lG~G~~g~V~~a~~ 94 (377)
T 3byv_A 73 RTLVRGTVLGQEDPYAYLEATD 94 (377)
T ss_dssp EEEEEEEEEEEETTEEEEEEEC
T ss_pred ceEEEcceeecCCCEEEEEEEE
Confidence 4455568999999999999985
No 220
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=61.55 E-value=1.7 Score=44.87 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=17.0
Q ss_pred CCCcCCccccCCCcceeEEEe
Q 005361 677 NFDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 677 ~Fs~~~~iG~GgfG~VYkg~L 697 (700)
.|....+||+||||.||+|.-
T Consensus 43 ~y~~~~~lG~G~~g~Vy~~~~ 63 (371)
T 4exu_A 43 TYVSPTHVGSGAYGSVCSAID 63 (371)
T ss_dssp TEEEEEEEEECSSEEEEEEEE
T ss_pred cEEEEeEEecCCCeEEEEEEE
Confidence 344467899999999999964
No 221
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=61.02 E-value=1.8 Score=47.32 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=17.5
Q ss_pred CCcCCccccCCCcceeEEEeC
Q 005361 678 FDPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 678 Fs~~~~iG~GgfG~VYkg~L~ 698 (700)
|.-..+||+|+||.||+|...
T Consensus 269 ~~~~~~lG~G~fg~Vy~~~~~ 289 (535)
T 2h8h_A 269 LRLEVKLGQGCFGEVWMGTWN 289 (535)
T ss_dssp EEEEEEEEECSSEEEEEEEET
T ss_pred hhhheecccCCCeEEEEEEEC
Confidence 344678999999999999865
No 222
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=60.64 E-value=1.8 Score=44.85 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=17.7
Q ss_pred cCCCcCCccccCCCcceeEEEe
Q 005361 676 NNFDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 676 ~~Fs~~~~iG~GgfG~VYkg~L 697 (700)
+.|.-..+||+||||+||+++-
T Consensus 37 ~~y~~~~~lg~G~~g~V~~~~~ 58 (397)
T 1wak_A 37 GRYHVIRKLGWGHFSTVWLSWD 58 (397)
T ss_dssp TTEEEEEEEEECSSEEEEEEEE
T ss_pred CeEEEEEEeeecCCeeEEEEEe
Confidence 3455567999999999999964
No 223
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=60.63 E-value=1.9 Score=43.56 Aligned_cols=27 Identities=19% Similarity=0.423 Sum_probs=22.2
Q ss_pred HHHHcCCCcCCccccCCCcceeEEEeC
Q 005361 672 KAATNNFDPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 672 ~~AT~~Fs~~~~iG~GgfG~VYkg~L~ 698 (700)
....++|.....||+|+||.||+|+..
T Consensus 38 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~ 64 (342)
T 1b6c_B 38 RTIARTIVLQESIGKGRFGEVWRGKWR 64 (342)
T ss_dssp HHHHHHCEEEEEEEEETTEEEEEEEET
T ss_pred ccccccEEEEeeecCCCCcEEEEEEEc
Confidence 445567877899999999999999753
No 224
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=60.53 E-value=1.5 Score=46.48 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=18.5
Q ss_pred cCCCcCCccccCCCcceeEEEe
Q 005361 676 NNFDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 676 ~~Fs~~~~iG~GgfG~VYkg~L 697 (700)
++|....+||+||||.||++.-
T Consensus 148 ~~y~~~~~lG~G~~g~V~~~~~ 169 (446)
T 4ejn_A 148 NEFEYLKLLGKGTFGKVILVKE 169 (446)
T ss_dssp GGEEEEEEEEEETTEEEEEEEE
T ss_pred HHcEEeEEEeeCcCEEEEEEEE
Confidence 4566678999999999999874
No 225
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=60.50 E-value=1.7 Score=47.90 Aligned_cols=22 Identities=32% Similarity=0.694 Sum_probs=18.2
Q ss_pred cCCCcCCccccCCCcceeEEEe
Q 005361 676 NNFDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 676 ~~Fs~~~~iG~GgfG~VYkg~L 697 (700)
++|.-..+||+|+||.||+++-
T Consensus 157 ~~Y~i~~~lG~G~fg~V~~~~~ 178 (573)
T 3uto_A 157 DHYDIHEELGTGAFGVVHRVTE 178 (573)
T ss_dssp GTEEEEEEEEEETTEEEEEEEE
T ss_pred cccEEEEEEeeccCeEEEEEEE
Confidence 4565677899999999999974
No 226
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=60.42 E-value=1.7 Score=45.22 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=18.5
Q ss_pred cCCCcCCccccCCCcceeEEEe
Q 005361 676 NNFDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 676 ~~Fs~~~~iG~GgfG~VYkg~L 697 (700)
+.|....+||+|+||.||+|+-
T Consensus 51 ~~y~i~~~LG~G~~g~Vy~~~~ 72 (387)
T 1kob_A 51 DYYDILEELGSGAFGVVHRCVE 72 (387)
T ss_dssp GTEEEEEEEEEETTEEEEEEEE
T ss_pred cceEEEEEEecCCCEEEEEEEE
Confidence 4566678999999999999975
No 227
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=60.20 E-value=2.3 Score=43.71 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=17.1
Q ss_pred CCcCCccccCCCcceeEEEe
Q 005361 678 FDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 678 Fs~~~~iG~GgfG~VYkg~L 697 (700)
|....+||+||||.||+|.-
T Consensus 64 y~~~~~lG~G~~g~V~~~~~ 83 (371)
T 3q60_A 64 LKLVEPLRVGDRSVVFLVRD 83 (371)
T ss_dssp EEEEEEEEECSSEEEEEEEE
T ss_pred eeeeeeccCCCCEEEEEEEE
Confidence 44578999999999999974
No 228
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=59.96 E-value=1.8 Score=44.25 Aligned_cols=22 Identities=36% Similarity=0.694 Sum_probs=18.6
Q ss_pred cCCCcCCccccCCCcceeEEEe
Q 005361 676 NNFDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 676 ~~Fs~~~~iG~GgfG~VYkg~L 697 (700)
++|.....||+|+||.||++.-
T Consensus 41 ~~y~~~~~lG~G~~g~V~~~~~ 62 (350)
T 1rdq_E 41 DQFDRIKTLGTGSFGRVMLVKH 62 (350)
T ss_dssp GGEEEEEEEEECSSCEEEEEEE
T ss_pred HHCEEEEEeecCcCcEEEEEEE
Confidence 4566678999999999999975
No 229
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=59.54 E-value=2.1 Score=46.77 Aligned_cols=23 Identities=30% Similarity=0.609 Sum_probs=19.1
Q ss_pred cCCCcCCccccCCCcceeEEEeC
Q 005361 676 NNFDPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 676 ~~Fs~~~~iG~GgfG~VYkg~L~ 698 (700)
++|...++||+||||.||++...
T Consensus 185 ~~f~~~~~LG~G~fG~Vy~a~~~ 207 (543)
T 3c4z_A 185 DWFLDFRVLGRGGFGEVFACQMK 207 (543)
T ss_dssp GGEEEEEEEEECSSSEEEEEEET
T ss_pred hheEEEEEEeeCCCeEEEEEEEC
Confidence 56666778999999999999753
No 230
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=59.10 E-value=2.5 Score=47.64 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=19.9
Q ss_pred HcCCCcCCccccCCCcceeEEEeC
Q 005361 675 TNNFDPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 675 T~~Fs~~~~iG~GgfG~VYkg~L~ 698 (700)
.++|....+||+|+||+||++...
T Consensus 340 ~~~f~~~~~LG~G~fG~V~~~~~~ 363 (674)
T 3pfq_A 340 LTDFNFLMVLGKGSFGKVMLSERK 363 (674)
T ss_dssp CTTEEEEEESSBTTTBCEEEEEES
T ss_pred ccceEEEEEEccCCCEEEEEEEEC
Confidence 456777789999999999999753
No 231
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=58.96 E-value=1.8 Score=44.19 Aligned_cols=22 Identities=9% Similarity=0.129 Sum_probs=18.0
Q ss_pred CCCcCCccccCCCcceeEEEeC
Q 005361 677 NFDPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 677 ~Fs~~~~iG~GgfG~VYkg~L~ 698 (700)
+|.-...||+|+||.||+|...
T Consensus 43 ~y~~~~~lg~G~~g~Vy~~~~~ 64 (352)
T 2jii_A 43 QWKLKSFQTRDNQGILYEAAPT 64 (352)
T ss_dssp EEEEEEEEEEETTEEEEEEEEC
T ss_pred eEEEEEEecCCCCeEEEEEeec
Confidence 4445689999999999999753
No 232
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=58.85 E-value=1.7 Score=43.93 Aligned_cols=19 Identities=21% Similarity=0.592 Sum_probs=16.2
Q ss_pred cCCccccCCCcceeEEEeC
Q 005361 680 PANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 680 ~~~~iG~GgfG~VYkg~L~ 698 (700)
...+||+||||.||++.-.
T Consensus 45 ~~~~lg~G~~g~Vy~~~~~ 63 (335)
T 2owb_A 45 RGRFLGKGGFAKCFEISDA 63 (335)
T ss_dssp EEEEEEEETTEEEEEEEET
T ss_pred EEEEEeeCCCeEEEEEEEC
Confidence 3578999999999999754
No 233
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=58.74 E-value=2.7 Score=41.49 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=15.8
Q ss_pred cCCccccCCCcceeEEEe
Q 005361 680 PANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 680 ~~~~iG~GgfG~VYkg~L 697 (700)
-...||+|+||.||+|..
T Consensus 94 ~~~~iG~G~~g~Vy~~~~ 111 (282)
T 1zar_A 94 IGKLMGEGKESAVFNCYS 111 (282)
T ss_dssp EEEEEEECSSEEEEEEEE
T ss_pred ecCEeccCCCceEEEEEe
Confidence 348999999999999975
No 234
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=58.57 E-value=3.1 Score=45.36 Aligned_cols=20 Identities=15% Similarity=0.358 Sum_probs=9.3
Q ss_pred CcCCccccCCCcceeEEEeC
Q 005361 679 DPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 679 s~~~~iG~GgfG~VYkg~L~ 698 (700)
-+.++||+|+||.||||...
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~~ 358 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSYL 358 (540)
T ss_dssp ---------CCEEEEEEECS
T ss_pred CCCCEEeeCCCEEEEEEEEC
Confidence 34679999999999998653
No 235
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=58.55 E-value=2.9 Score=40.51 Aligned_cols=32 Identities=13% Similarity=0.123 Sum_probs=22.5
Q ss_pred ccHHHHHHHHcCC---CcCCccccCCCcceeEEEe
Q 005361 666 YTLRQIKAATNNF---DPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 666 f~~~el~~AT~~F---s~~~~iG~GgfG~VYkg~L 697 (700)
+++..+.+..+.- .-...||+|+||.||+|..
T Consensus 34 ~~~~~l~~~~~~~~~~~i~~~ig~G~~g~Vy~a~~ 68 (258)
T 1zth_A 34 RTLKTLYKLSAKGYITAMGGVISTGKEANVFYADG 68 (258)
T ss_dssp HHHHHHHHHHHTTSEEEEEEEEEECSSEEEEEEEE
T ss_pred HHHHHHHHHHhCCCchhhCCEEeecceEEEEEEEE
Confidence 5555565555432 2246899999999999986
No 236
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=58.15 E-value=3.2 Score=46.11 Aligned_cols=15 Identities=40% Similarity=0.576 Sum_probs=13.8
Q ss_pred ccccCCCcceeEEEe
Q 005361 683 KVGEGGFGSVYKVNV 697 (700)
Q Consensus 683 ~iG~GgfG~VYkg~L 697 (700)
+||+|+||.||+|+.
T Consensus 343 ~LG~G~fG~Vy~~~~ 357 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVY 357 (613)
T ss_dssp EEEECSSSEEEEEEE
T ss_pred EEecCCCcEEEEEEE
Confidence 699999999999975
No 237
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=57.78 E-value=2 Score=47.16 Aligned_cols=24 Identities=38% Similarity=0.678 Sum_probs=20.2
Q ss_pred HcCCCcCCccccCCCcceeEEEeC
Q 005361 675 TNNFDPANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 675 T~~Fs~~~~iG~GgfG~VYkg~L~ 698 (700)
.++|....+||+||||.||++...
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~ 206 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVR 206 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEET
T ss_pred ccceEEEEEEeeCCCEEEEEEEEC
Confidence 466777889999999999999753
No 238
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=56.71 E-value=2.4 Score=45.26 Aligned_cols=21 Identities=19% Similarity=0.408 Sum_probs=17.3
Q ss_pred cCCCcCCccccCCCcceeEEE
Q 005361 676 NNFDPANKVGEGGFGSVYKVN 696 (700)
Q Consensus 676 ~~Fs~~~~iG~GgfG~VYkg~ 696 (700)
+.|....+||+||||+||++.
T Consensus 62 ~~y~~~~~lG~G~~g~V~~a~ 82 (464)
T 3ttj_A 62 KRYQNLKPIGSGAQGIVCAAY 82 (464)
T ss_dssp TTEEEEEEEEECSSCEEEEEE
T ss_pred CCeEEEEEeecCCCeEEEEEE
Confidence 445556789999999999986
No 239
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=55.20 E-value=2.5 Score=45.70 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=15.9
Q ss_pred cCCCcCCccccCCCcceeEEEe
Q 005361 676 NNFDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 676 ~~Fs~~~~iG~GgfG~VYkg~L 697 (700)
+.|....+||+|+||+||++.-
T Consensus 36 ~~Y~~~~~lG~G~~g~V~~~~~ 57 (504)
T 3q5i_A 36 ESYFKVRKLGSGAYGEVLLCKE 57 (504)
T ss_dssp GTEEEEEEEEC--CEEEEEEEE
T ss_pred cceEEEeEecccCCeEEEEEEE
Confidence 4455568999999999999875
No 240
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=54.60 E-value=2.9 Score=46.85 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=17.7
Q ss_pred cCCCcCCccccCCCcceeEEEe
Q 005361 676 NNFDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 676 ~~Fs~~~~iG~GgfG~VYkg~L 697 (700)
+.|.-...||+||||.||+|+.
T Consensus 390 ~~y~i~~~LG~G~fG~Vy~a~~ 411 (656)
T 2j0j_A 390 ERIELGRCIGEGQFGDVHQGIY 411 (656)
T ss_dssp GGEEEEEEEECCSSCCEEEEEE
T ss_pred ccEEEeeEEeeCCCEEEEEEEE
Confidence 3444467899999999999975
No 241
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*
Probab=53.71 E-value=47 Score=27.71 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=35.0
Q ss_pred ccceEEEeeecCcceEEEEEeEEEEecCCCccccCCeEEEEEEecceeccccccc
Q 005361 496 LSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQEKLVKKDFNI 550 (700)
Q Consensus 496 ~~lt~~~~~~~~~~y~vrlhF~ei~~~~~~~~~~~~~rvF~iyI~~~~~~~~~di 550 (700)
..++|...+...|.|.|+++++-- ..+.|.++|+|++..+...+.+
T Consensus 39 ~~v~~~V~v~~aG~Y~l~~rya~~---------~~~~~~~~l~VnG~~~~~~v~~ 84 (127)
T 2vzp_A 39 SSVEWTVTVPSAGTYDVVVRYANG---------TTTSRPLDFSVNGSISASGVAF 84 (127)
T ss_dssp CEEEEEEEESSSEEEEEEEEEECC---------SSSCCCEEEEETTEEEEEEECC
T ss_pred CEEEEEEEcCCCCEEEEEEEEEcC---------CCCCeEEEEEECCEEeeeEEEe
Confidence 458899899999999999999873 2246888999999875433443
No 242
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=53.53 E-value=3.6 Score=42.84 Aligned_cols=16 Identities=25% Similarity=0.273 Sum_probs=14.4
Q ss_pred CccccCCCcceeEEEe
Q 005361 682 NKVGEGGFGSVYKVNV 697 (700)
Q Consensus 682 ~~iG~GgfG~VYkg~L 697 (700)
.+||+|+||+||++.-
T Consensus 68 ~~LG~G~~g~V~~~~~ 83 (400)
T 1nxk_A 68 QVLGLGINGKVLQIFN 83 (400)
T ss_dssp EEEEEETTEEEEEEEE
T ss_pred ceeeeccCeEEEEEEE
Confidence 5799999999999974
No 243
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=50.70 E-value=4.1 Score=43.77 Aligned_cols=20 Identities=25% Similarity=0.592 Sum_probs=13.6
Q ss_pred CCcCCccccCCCcceeEEEe
Q 005361 678 FDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 678 Fs~~~~iG~GgfG~VYkg~L 697 (700)
|....+||+||||+||++.-
T Consensus 39 y~~~~~lG~G~~g~V~~~~~ 58 (494)
T 3lij_A 39 YQRVKKLGSGAYGEVLLCRD 58 (494)
T ss_dssp EEEEEEEECC---EEEEEEE
T ss_pred eEEeeEEecCCCEEEEEEEE
Confidence 44467999999999999874
No 244
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A
Probab=49.51 E-value=55 Score=28.07 Aligned_cols=46 Identities=15% Similarity=0.284 Sum_probs=34.8
Q ss_pred ccceEEEeeecCcceEEEEEeEEEEecCCCccccCCeEEEEEEecceeccccccc
Q 005361 496 LSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQEKLVKKDFNI 550 (700)
Q Consensus 496 ~~lt~~~~~~~~~~y~vrlhF~ei~~~~~~~~~~~~~rvF~iyI~~~~~~~~~di 550 (700)
..++|...+...|.|.|+++++-- ..+.|.++|+||+......+.+
T Consensus 40 ~~v~~~V~v~~aG~Y~l~~ryan~---------~~~~~~~~l~VNG~~~~~~v~~ 85 (144)
T 2w47_A 40 GYIEWNVNAPSSGSYALIFRYANG---------TTANRPMRITVNGNIVKPSMDF 85 (144)
T ss_dssp CEEEEEEEESSSEEEEEEEEEECC---------SSSCCCEEEEETTEEEEEEECC
T ss_pred CEEEEEEECCCCcEEEEEEEEECC---------CCCCeEEEEEECCeEeeeEEEe
Confidence 458899889999999999999862 2246888999999864344443
No 245
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=48.79 E-value=3.4 Score=41.46 Aligned_cols=17 Identities=35% Similarity=0.626 Sum_probs=15.2
Q ss_pred CCccccCCCcceeEEEe
Q 005361 681 ANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 681 ~~~iG~GgfG~VYkg~L 697 (700)
..+||+|+||.||++..
T Consensus 46 ~~~lg~G~~g~V~~~~~ 62 (326)
T 2w1i_A 46 LQQLGKGNFGSVEMCRY 62 (326)
T ss_dssp EEEEECCSSEEEEEEEE
T ss_pred eeeeccCCCeEEEEEEe
Confidence 57899999999999974
No 246
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=46.76 E-value=6.3 Score=40.78 Aligned_cols=18 Identities=17% Similarity=0.250 Sum_probs=15.5
Q ss_pred CCccccCCCcceeEEEeC
Q 005361 681 ANKVGEGGFGSVYKVNVM 698 (700)
Q Consensus 681 ~~~iG~GgfG~VYkg~L~ 698 (700)
...||+||||.||+|.-+
T Consensus 100 ~~~IG~Gk~a~VY~a~d~ 117 (397)
T 4gyi_A 100 GSRIGVGKESDIMIVADE 117 (397)
T ss_dssp EEEEEECSSEEEEEEECT
T ss_pred cCEeeeCCceEEEEEECC
Confidence 568999999999999754
No 247
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=46.63 E-value=3.8 Score=46.12 Aligned_cols=22 Identities=18% Similarity=0.452 Sum_probs=18.5
Q ss_pred cCCCcCCccccCCCcceeEEEe
Q 005361 676 NNFDPANKVGEGGFGSVYKVNV 697 (700)
Q Consensus 676 ~~Fs~~~~iG~GgfG~VYkg~L 697 (700)
+.|....+||+||||.||+|+.
T Consensus 80 ~~y~i~~~lg~G~~g~Vy~a~~ 101 (681)
T 2pzi_A 80 GQYEVKGCIAHGGLGWIYLALD 101 (681)
T ss_dssp TTEEEEEEEEEETTEEEEEEEE
T ss_pred CceEEEEEEeeCCCeEEEEEEE
Confidence 4566678999999999999975
No 248
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum}
Probab=39.75 E-value=1.2e+02 Score=26.31 Aligned_cols=82 Identities=15% Similarity=0.156 Sum_probs=44.9
Q ss_pred ccceEE-EeeecCcceEEEEEeEEEEecCCCccc-cCCeEEEEEEecceecccccccchhcCCcCccEEEeeEEEecCCc
Q 005361 496 LSLTYY-GLCLGNGNYTVRLHFAEIIFKNDSTFN-SLGKRIFDIYIQEKLVKKDFNIEDEAGGTGIPIVKNFPAEVTSHT 573 (700)
Q Consensus 496 ~~lt~~-~~~~~~~~y~vrlhF~ei~~~~~~~~~-~~~~rvF~iyI~~~~~~~~~di~~~~~~~~~p~~~df~v~~~~~~ 573 (700)
..++|. ..+...|.|.|+++|+.-.......+. ....|...|+||+... ..+... .++.....-.....|......
T Consensus 47 ~~vtf~~V~~~~aG~Y~l~irYang~~~~~~~y~~~~~~r~~~v~VNG~~~-~~v~fp-~Tg~W~~~~~~tv~V~L~aG~ 124 (156)
T 2wz8_A 47 NYLQFNNVYVPQAGTYRMVVQFANAEVFGQHSYNNNVVDRYCSISVNGGPE-KGHYFF-NTRGWNTYRTDIIDVYLNAGN 124 (156)
T ss_dssp SCEEEEEEEESSCEEEEEEEEEECCCBC-------CBCCEEEEEEETTCCC-EEEEEC-CCSSTTCCEEEEEEEEECSEE
T ss_pred CEEEEEEEecCCCcEEEEEEEEECCCcccccccCCccCcceEEEEECCcee-eEEEeC-CCCCCCcceEEEEEEEECCCc
Confidence 358898 888899999999999863110000011 1247999999998762 223322 112222222233344554444
Q ss_pred cEEEEE
Q 005361 574 LKIHLY 579 (700)
Q Consensus 574 ~~i~~~ 579 (700)
-.|++.
T Consensus 125 NtI~~~ 130 (156)
T 2wz8_A 125 NTIRFY 130 (156)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 445553
No 249
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=39.36 E-value=54 Score=26.20 Aligned_cols=45 Identities=18% Similarity=0.222 Sum_probs=25.0
Q ss_pred CCCCCchhcCCCCCCCEEEccCCcCCCCCCccccCCCCccEEEeee
Q 005361 151 LSGPFPKVLTNITTLKNLSIEGNLFTGSIPPDIRKLINLQKLILSS 196 (700)
Q Consensus 151 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 196 (700)
++.+-...|.++.+|+.+.|..+ ++..-..+|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 44444455666666666666554 3324445566666666666654
No 250
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A
Probab=35.01 E-value=1.3e+02 Score=25.52 Aligned_cols=40 Identities=13% Similarity=0.085 Sum_probs=31.7
Q ss_pred ccceEEEeeecCcceEEEEEeEEEEecCCCccccCCeEEEEEEecceec
Q 005361 496 LSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQEKLV 544 (700)
Q Consensus 496 ~~lt~~~~~~~~~~y~vrlhF~ei~~~~~~~~~~~~~rvF~iyI~~~~~ 544 (700)
..++|...+...|.|.|+++++-- ....|..+|+||+..+
T Consensus 39 ~~v~~~V~v~~aG~Y~l~~ryang---------~~~~r~~~l~VNG~~~ 78 (139)
T 2w87_A 39 AAVVWAIDATSSGRRTLTIRYANG---------GTANRNGSLVINGGSN 78 (139)
T ss_dssp CEEEEEEEESSCEEEEEEEEEECC---------SSSCCCEEEEETTTTT
T ss_pred CEEEEEEECCCCcEEEEEEEEECC---------CCCCceEEEEECCEEc
Confidence 357888888899999999999762 2235889999998765
No 251
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}
Probab=32.57 E-value=50 Score=28.46 Aligned_cols=40 Identities=13% Similarity=0.224 Sum_probs=32.1
Q ss_pred ccceEEEeeecCcceEEEEEeEEEEecCCCccccCCeEEEEEEecceec
Q 005361 496 LSLTYYGLCLGNGNYTVRLHFAEIIFKNDSTFNSLGKRIFDIYIQEKLV 544 (700)
Q Consensus 496 ~~lt~~~~~~~~~~y~vrlhF~ei~~~~~~~~~~~~~rvF~iyI~~~~~ 544 (700)
..++|...+...|.|.|++.++.- ..+.|.++|+|++..+
T Consensus 39 ~~v~~~V~v~~aG~Y~l~~ryang---------~~~~r~~~l~VNG~~~ 78 (145)
T 2w3j_A 39 ASIVWSLSAASAKTYTAQIRFGNG---------GTSARRATVVVNDSQI 78 (145)
T ss_dssp CEEEEEEEESSCEEEEEEEEEECC---------SSSCCCEEEEETTEEE
T ss_pred CEEEEEEECCCCeEEEEEEEEECC---------CCCCeEEEEEECCeEe
Confidence 458898889999999999999841 2246889999999765
No 252
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=29.01 E-value=59 Score=25.97 Aligned_cols=45 Identities=11% Similarity=0.074 Sum_probs=25.7
Q ss_pred CCCCCCccccCCCCccEEEeeecCCCCcCchhhhCCCCCcEEEeec
Q 005361 175 FTGSIPPDIRKLINLQKLILSSNSFTGELPAELTKLTNLNDLRISD 220 (700)
Q Consensus 175 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 220 (700)
++..-...|.++.+|+.+.|..+ ++.+-..+|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34344456666667776666654 3334455666666666666643
No 253
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=20.94 E-value=31 Score=22.14 Aligned_cols=7 Identities=43% Similarity=1.080 Sum_probs=3.0
Q ss_pred eEEeeec
Q 005361 638 FIMRWKG 644 (700)
Q Consensus 638 ~~~~~~~ 644 (700)
.+..|++
T Consensus 28 Li~~w~q 34 (39)
T 2l6w_A 28 LIMLWQK 34 (39)
Confidence 3444543
Done!