Query 005362
Match_columns 700
No_of_seqs 182 out of 861
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 23:11:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005362.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005362hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eh1_A Protein transport prote 100.0 2E-129 8E-134 1126.1 59.5 635 2-697 42-751 (751)
2 3eh2_A Protein transport prote 100.0 6E-129 2E-133 1126.5 59.0 647 2-699 45-765 (766)
3 3efo_B SEC24 related gene fami 100.0 9E-129 3E-133 1125.3 58.3 647 2-699 49-769 (770)
4 1m2v_B SEC24, protein transpor 100.0 5E-123 2E-127 1087.4 55.4 639 1-697 180-926 (926)
5 1pcx_A Protein transport prote 100.0 1E-122 4E-127 1081.1 55.8 640 1-697 64-810 (810)
6 1m2o_A SEC23, protein transpor 100.0 4E-118 1E-122 1040.1 54.2 653 2-697 11-765 (768)
7 2nut_A Protein transport prote 100.0 1E-115 5E-120 1017.7 59.0 651 2-696 20-765 (769)
8 2yrc_A Protein transport prote 99.4 8.2E-14 2.8E-18 105.9 2.6 41 47-87 6-50 (59)
9 4fx5_A VON willebrand factor t 99.0 1E-07 3.5E-12 105.0 26.4 250 122-456 78-347 (464)
10 3ibs_A Conserved hypothetical 98.9 7E-08 2.4E-12 95.3 17.5 157 120-360 10-197 (218)
11 1ijb_A VON willebrand factor; 98.5 3.6E-06 1.2E-10 82.1 18.8 163 121-362 13-182 (202)
12 4b4t_W RPN10, 26S proteasome r 98.5 5.6E-07 1.9E-11 90.9 12.9 148 123-353 5-163 (268)
13 1v7p_C Integrin alpha-2; snake 98.4 9.1E-06 3.1E-10 79.0 18.3 163 121-362 6-182 (200)
14 1n3y_A Integrin alpha-X; alpha 98.4 4E-06 1.4E-10 81.2 15.0 175 120-374 8-193 (198)
15 2b2x_A Integrin alpha-1; compu 98.4 7.8E-06 2.7E-10 80.9 16.5 162 121-362 22-198 (223)
16 2x31_A Magnesium-chelatase 60 98.4 3.5E-08 1.2E-12 95.2 -1.2 165 120-359 4-172 (189)
17 1q0p_A Complement factor B; VO 98.3 6.4E-06 2.2E-10 81.2 14.8 171 120-361 14-205 (223)
18 1mf7_A Integrin alpha M; cell 98.3 8E-06 2.7E-10 78.9 15.1 175 121-374 5-189 (194)
19 4hqf_A Thrombospondin-related 98.3 6.1E-06 2.1E-10 84.9 14.7 166 120-362 20-196 (281)
20 1atz_A VON willebrand factor; 98.3 2.4E-05 8.1E-10 75.2 18.0 159 121-362 5-171 (189)
21 2x5n_A SPRPN10, 26S proteasome 98.3 4.1E-06 1.4E-10 81.0 12.1 145 123-351 4-159 (192)
22 2odp_A Complement C2; C3/C5 co 98.3 1E-05 3.5E-10 90.5 17.2 178 120-373 8-209 (509)
23 1pt6_A Integrin alpha-1; cell 98.3 7.7E-06 2.6E-10 80.3 14.0 177 120-375 6-197 (213)
24 4hqo_A Sporozoite surface prot 98.3 7.8E-06 2.7E-10 83.4 13.6 179 121-378 18-206 (266)
25 1shu_X Anthrax toxin receptor 98.2 5.8E-05 2E-09 71.7 18.3 154 120-354 5-160 (182)
26 1rrk_A Complement factor B; BB 98.2 2.4E-05 8.2E-10 87.2 16.8 178 122-361 2-191 (497)
27 1mjn_A Integrin alpha-L; rossm 98.2 6.1E-05 2.1E-09 71.7 17.3 165 121-371 2-176 (179)
28 3n2n_F Anthrax toxin receptor 98.1 4.4E-05 1.5E-09 72.8 14.0 159 121-360 7-168 (185)
29 3hrz_D Complement factor B; se 97.9 1.1E-05 3.6E-10 94.8 7.8 178 122-361 244-433 (741)
30 3zqk_A VON willebrand factor; 97.9 0.0002 6.7E-09 69.4 15.6 153 121-362 21-180 (199)
31 2xgg_A Microneme protein 2; A/ 97.9 0.0003 1E-08 66.7 15.6 145 121-344 17-168 (178)
32 1jey_B KU80; double-strand DNA 97.6 0.00017 6E-09 81.4 11.0 196 122-387 8-254 (565)
33 3k6s_A Integrin alpha-X; cell 97.5 0.00016 5.6E-09 87.6 10.1 161 122-362 131-301 (1095)
34 1kcq_A Gelsolin, brevin, ADF, 97.2 0.0008 2.7E-08 57.8 7.8 88 571-667 2-90 (104)
35 1svq_A Severin; actin-binding; 96.7 0.0017 5.7E-08 56.8 5.2 89 571-667 12-101 (114)
36 3rag_A Uncharacterized protein 95.7 0.039 1.3E-06 54.3 9.7 45 121-165 134-182 (242)
37 3fg7_A Villin-1; actin binding 95.6 0.02 6.8E-07 61.3 7.5 104 570-687 281-392 (398)
38 2fh1_A Gelsolin; calcium, cont 95.4 0.019 6.5E-07 60.4 6.6 90 570-668 227-323 (344)
39 2ww8_A RRGA, cell WALL surface 94.8 0.072 2.5E-06 62.8 9.9 48 120-167 223-280 (893)
40 3fg6_A Adseverin, scinderin; C 94.7 0.018 6.1E-07 61.1 4.1 89 570-667 268-363 (371)
41 1jey_A KU70; double-strand DNA 94.7 0.26 8.8E-06 55.9 13.8 69 245-337 140-208 (609)
42 1yvr_A RO autoantigen, 60-kDa 94.5 0.073 2.5E-06 59.5 8.6 46 120-165 367-418 (538)
43 1j72_A Macrophage capping prot 94.1 0.06 2.1E-06 56.6 6.5 81 570-658 246-335 (347)
44 3fcs_B Integrin beta-3; beta p 93.9 2.7 9.4E-05 47.9 20.0 45 121-165 111-159 (690)
45 1d0n_A Horse plasma gelsolin; 93.6 0.093 3.2E-06 60.7 7.4 92 568-667 610-707 (729)
46 3t3p_B Integrin beta-3; integr 93.1 4.6 0.00016 43.5 18.9 191 121-341 111-317 (472)
47 1j72_A Macrophage capping prot 92.5 0.23 7.8E-06 52.1 7.7 88 571-667 135-223 (347)
48 2nvo_A RO sixty-related protei 89.6 1 3.6E-05 50.0 9.8 32 245-283 440-471 (535)
49 1d0n_A Horse plasma gelsolin; 89.4 0.56 1.9E-05 54.2 7.7 90 570-668 132-222 (729)
50 2fh1_A Gelsolin; calcium, cont 84.4 1.2 4.2E-05 46.4 6.2 82 571-667 124-207 (344)
51 3v4v_B Integrin beta-7; cell a 82.2 60 0.0021 35.1 21.4 233 121-397 132-390 (503)
52 3fg6_A Adseverin, scinderin; C 81.4 2.1 7.3E-05 45.0 6.7 82 571-667 165-249 (371)
53 3rag_A Uncharacterized protein 78.5 4.1 0.00014 39.9 7.1 62 270-360 11-76 (242)
54 2iue_A Pactolus I-domain; memb 75.2 3.3 0.00011 39.8 5.3 43 123-165 5-51 (212)
55 2a20_A Regulating synaptic mem 75.1 0.61 2.1E-05 34.4 0.1 25 52-78 35-59 (62)
56 2j9u_B VPS36, vacuolar protein 71.5 0.78 2.7E-05 35.8 -0.1 17 69-85 16-32 (76)
57 3fg7_A Villin-1; actin binding 71.0 0.85 2.9E-05 48.6 0.0 49 571-621 178-228 (398)
58 3vi3_B Integrin beta-1; beta p 69.9 1.2E+02 0.0041 32.3 22.1 190 122-342 123-325 (454)
59 2avu_E Flagellar transcription 51.5 4.1 0.00014 38.2 0.8 28 49-77 133-161 (192)
60 2gmg_A Hypothetical protein PF 50.9 3.7 0.00013 34.4 0.3 34 49-85 66-99 (105)
61 1s24_A Rubredoxin 2; electron 48.5 4 0.00014 33.1 0.2 30 50-79 35-77 (87)
62 1vq8_Z 50S ribosomal protein L 47.2 11 0.00039 30.2 2.7 30 50-81 27-56 (83)
63 1gh9_A 8.3 kDa protein (gene M 46.9 3.6 0.00012 32.0 -0.3 31 49-83 3-33 (71)
64 6rxn_A Rubredoxin; electron tr 46.7 4 0.00014 28.8 -0.1 29 51-79 5-39 (46)
65 2akl_A PHNA-like protein PA012 42.3 14 0.00048 32.0 2.6 29 49-80 26-54 (138)
66 1yk4_A Rubredoxin, RD; electro 42.0 6.1 0.00021 28.7 0.3 11 69-79 34-44 (52)
67 4rxn_A Rubredoxin; electron tr 39.5 6.4 0.00022 28.8 0.1 11 69-79 35-45 (54)
68 3k6s_B Integrin beta-2; cell r 37.9 18 0.00063 41.0 3.5 45 121-165 104-152 (687)
69 2csz_A Synaptotagmin-like prot 36.5 8 0.00027 30.4 0.2 29 51-79 43-73 (76)
70 1pft_A TFIIB, PFTFIIBN; N-term 35.5 36 0.0012 24.1 3.6 27 50-79 5-33 (50)
71 1yuz_A Nigerythrin; rubrythrin 35.3 12 0.00041 35.6 1.2 26 50-80 171-196 (202)
72 2v3b_B Rubredoxin 2, rubredoxi 33.3 9.4 0.00032 28.0 0.1 11 69-79 35-45 (55)
73 3j20_Y 30S ribosomal protein S 32.5 26 0.00088 25.1 2.3 25 51-79 20-46 (50)
74 1dx8_A Rubredoxin; electron tr 32.5 9.9 0.00034 29.5 0.1 11 69-79 39-49 (70)
75 2kn9_A Rubredoxin; metalloprot 32.0 9.8 0.00034 30.3 0.0 30 50-79 27-69 (81)
76 4gat_A Nitrogen regulatory pro 31.9 14 0.00049 28.2 1.0 31 48-78 7-38 (66)
77 2lk0_A RNA-binding protein 5; 31.7 12 0.00041 24.1 0.4 14 69-82 4-17 (32)
78 1e8j_A Rubredoxin; iron-sulfur 30.9 8.5 0.00029 27.9 -0.5 10 69-78 35-44 (52)
79 1x0t_A Ribonuclease P protein 30.4 17 0.00059 31.3 1.3 33 51-83 66-107 (120)
80 2zet_C Melanophilin; complex, 29.4 15 0.0005 33.2 0.7 32 50-81 85-119 (153)
81 2kdx_A HYPA, hydrogenase/ureas 26.4 18 0.0006 31.1 0.7 27 51-81 74-101 (119)
82 2k1p_A Zinc finger RAN-binding 24.1 17 0.0006 23.5 0.1 14 69-82 5-18 (33)
83 2apo_B Ribosome biogenesis pro 23.9 30 0.001 25.8 1.4 27 49-83 5-31 (60)
84 1b3t_A Protein (nuclear protei 23.5 91 0.0031 26.7 4.4 33 135-167 110-145 (147)
85 1zbd_B Rabphilin-3A; G protein 23.4 31 0.0011 30.3 1.7 31 51-81 73-109 (134)
86 2hgo_A CASSIICOLIN; toxin, dis 23.1 26 0.00088 20.7 0.7 25 52-76 2-27 (27)
87 3gj5_B Nuclear pore complex pr 22.7 24 0.00082 23.1 0.6 18 67-84 4-21 (34)
88 4hc9_A Trans-acting T-cell-spe 21.8 18 0.00062 31.0 -0.2 30 49-78 4-34 (115)
89 2k3r_A Ribonuclease P protein 21.7 26 0.00088 30.4 0.8 34 51-84 61-103 (123)
90 1gnf_A Transcription factor GA 20.6 16 0.00055 25.7 -0.6 30 49-78 3-33 (46)
91 1w7p_D VPS36P, YLR417W; ESCRT- 20.5 21 0.00072 39.3 0.0 17 69-85 116-132 (566)
92 1wg8_A Predicted S-adenosylmet 20.3 43 0.0015 33.5 2.2 30 135-164 207-236 (285)
93 3j21_g 50S ribosomal protein L 20.2 30 0.001 24.9 0.7 29 49-83 13-41 (51)
No 1
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=100.00 E-value=2.2e-129 Score=1126.12 Aligned_cols=635 Identities=22% Similarity=0.372 Sum_probs=550.6
Q ss_pred ccccccCcCCCCHHHHHhcCCceeeEEccCCCCCCCCCCCcccCCCCCCCcccCcceeEecCceEe-cceEEEccCCCCC
Q 005362 2 AVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYFNTYCELE-QWAWTCSLCGSLN 80 (700)
Q Consensus 2 ~vR~T~~~~P~~~~~~~~~~lP~g~~v~Pf~~~~~~~~~p~~~~~~~~~~RC~~C~ayiNp~~~~~-~~~w~C~~C~~~N 80 (700)
|||+|||+||.|++++++++||||++|+||++..+ +|++ ....|+||++|||||||||+|. +++|+||||+..|
T Consensus 42 ~~R~T~n~iP~t~~~~~~~~lPlg~~i~Pl~~~~~---~P~v--~~~~p~RC~rCrayiNPf~~f~~~~~w~Cn~C~~~N 116 (751)
T 3eh1_A 42 SFRCTLTNIPQTQALLNKAKLPLGLLLHPFRDLTQ---LPVI--TSNTIVRCRSCRTYINPFVSFIDQRRWKCNLCYRVN 116 (751)
T ss_dssp TEEESBSSEESSHHHHHHHCCCCEEEECTTCCCSC---CCEE--CCSCCCBCTTTCCBCCTTCEESSSSEEECTTTCCEE
T ss_pred eEEeecccCCCCHHHHHhCCCCeEEEEecCCcCCC---CCcc--CCCCCCcccCccCEeCCceEEecCCEEEcccccCCC
Confidence 79999999999999999999999999999998653 4543 2456899999999999999985 5899999999999
Q ss_pred CCChhhh-----cccCCCCCCcccccccEEEEecCCCCccccCCCCcEEEEEEECCCCh---hHHHHHHHHHHHHHHhCC
Q 005362 81 GLSSQAI-----ARYTHPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSE---EFLELTRSALQAALEAVP 152 (700)
Q Consensus 81 ~~p~~~~-----~~~~~~~~~pEL~~~tve~~~p~~y~~~~~~~~~p~~vFvID~s~~~---~~l~~~~~~l~~~l~~lp 152 (700)
++|++|. .++.+.++||||++|||||++|++|+.+ ++.||+|+||||||..+ |.+++++++|+++|+.||
T Consensus 117 ~~P~~y~~~~~~~~~~d~~~rpEL~~~tvEy~~p~~y~~r--~p~pp~yvFvIDvs~~a~~~g~l~~~~~sl~~~L~~lp 194 (751)
T 3eh1_A 117 DVPEEFMYNPLTRSYGEPHKRPEVQNSTVEFIASSDYMLR--PPQPAVYLFVLDVSHNAVEAGYLTILCQSLLENLDKLP 194 (751)
T ss_dssp ECCGGGC---------CGGGSHHHHCSEEEEEECGGGCSS--SCCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHhcccccccccCcccCchhccceEEEEcChhhhcC--CCCCcEEEEEEEccHhhhhhhHHHHHHHHHHHHHHhcC
Confidence 9999973 1244577899999999999999999865 57899999999999875 779999999999999999
Q ss_pred CCc--EEEEeeecceEEEEEccCCCCceeeeeeCCCCCccccccccc-cCcc-CcCccchHhHHHHHHHHHHhcCCCCCc
Q 005362 153 SGA--LFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELED-VMPL-SQFLAPVETFKENITSALETLRPTTSW 228 (700)
Q Consensus 153 ~~~--~vgiItf~~~V~~~~l~~~~~~~~~~~~~~~~~~~~~~dl~~-~~p~-~~~l~~l~~~~~~i~~ll~~l~~~~~~ 228 (700)
+++ +|||||||+.||||+++++..+++++ ++.|++| ++|. ++||+|++||++.|+++|++|+.++++
T Consensus 195 ~~~~~~VG~ITfd~~vh~y~l~~~~~~~qml---------vv~dl~d~f~P~~~~~lv~l~e~~~~i~~lL~~Lp~~~~~ 265 (751)
T 3eh1_A 195 GDSRTRIGFMTFDSTIHFYNLQEGLSQPQML---------IVSDIDDVFLPTPDSLLVNLYESKELIKDLLNALPNMFTN 265 (751)
T ss_dssp CCTTCEEEEEEESSSEEEEECCTTCSSCEEE---------EESCTTCTTSCCGGGTSEETTTTHHHHHHHHHHGGGTSTT
T ss_pred CCcCcEEEEEEeCCEEEEEECCCCcccceee---------ccccccccCCCChhhhcccHHHHHHHHHHHHHhhhHhhcC
Confidence 865 99999999999999999877665553 4567887 4776 789999999999999999999887644
Q ss_pred ccccccccCCCCccCCCcchHHHHHHHHHhhccccCCCcccceEEEEecCCCCCCCCccccccccCcccCCCcchhhccC
Q 005362 229 ERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALL 308 (700)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ll~~~g~~~~~~gkii~f~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~ 308 (700)
.. ++.+|+|+||++|..+|+..| |||++|++|+||.|||+|+.|++++.. ++++|++++
T Consensus 266 ~~------------~~~~~~G~AL~aA~~ll~~~G------GrI~~F~sg~pt~GpG~l~~r~~~~~~---~~~ke~~~~ 324 (751)
T 3eh1_A 266 TR------------ETHSALGPALQAAFKLMSPTG------GRVSVFQTQLPSLGAGLLQSREDPNQR---SSTKVVQHL 324 (751)
T ss_dssp CS------------CCCCCHHHHHHHHHHHHTTTC------EEEEEEECSCCCSSTTCCCCCCCSCGG---GGSSSCTTC
T ss_pred CC------------CCccchHHHHHHHHHHhhcCC------CEEEEEecCCCCCCCCccccccccccC---CCchhhhhh
Confidence 31 367999999999999999765 899999999999999999999876532 335678899
Q ss_pred CCcchHHHHHHHHHHHcCcEEEEeeecCCCcChhhhhhcccccceEEEEeCCCCC-------CchhHHHHHHhccCccee
Q 005362 309 PEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDD-------STLPQDIYRMLSRPYAFN 381 (700)
Q Consensus 309 ~~~~~fY~~la~~~~~~~isvdlf~~~~~~~dl~~l~~l~~~TGG~~~~y~~~~~-------~~l~~dl~~~l~~~~~~~ 381 (700)
+++.+||++||.+|+++||+||+|+++.+|+|++||+.+++.|||.+++|++|+. ++|.+||+|.|++++||+
T Consensus 325 ~~a~~fY~~la~~~~~~~i~VDlF~~s~~~~dlatl~~l~~~TGG~v~~y~~F~~~~~~~~~~~f~~dl~r~l~~~~gf~ 404 (751)
T 3eh1_A 325 GPATDFYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGCIYYYPSFHYTHNPSQAEKLQKDLKRYLTRKIGFE 404 (751)
T ss_dssp SCSCSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHTTTCCEEECTTCBTTTBHHHHHHHHHHHHHHHHSCCEEE
T ss_pred cchHHHHHHHHHHHHhcCceEEEEEccCcccChHhHHHHHhhcCceEEEeCCcccccchhHHHHHHHHHHHHHhhhhccc
Confidence 9999999999999999999999999999999999999999999999999999974 379999999999999999
Q ss_pred eEEEEecCCCceeeeeeeccccCCCCCcceeeeccCCCceEEEEEEEecCCCCCCCCCCCcEEEEEEeeeeccCccccch
Q 005362 382 CIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFARHTSEQPMLQIAFQYTVVVPPEELSS 461 (700)
Q Consensus 382 a~~rvR~S~gl~i~~~~G~~~~~~~~~~~~~i~~~d~~~s~~~~~e~~~~~~l~~~~~~~~~iQ~a~lYt~~~g~~~~~~ 461 (700)
|+||||||+||+|+++||||+.++ .++|.++.+|+|+|++|+|++++ ++. ....+|||+|++||+..|+|++|+
T Consensus 405 a~mrVR~S~glkv~~~~G~~~~~~--t~~~~l~~i~~d~s~~v~~~~~~--~l~--~~~~~~~Q~allYT~~~G~RRiRV 478 (751)
T 3eh1_A 405 AVMRIRCTKGLSMHTFHGNFFVRS--TDLLSLANINPDAGFAVQLSIEE--SLT--DTSLVCFQTALLYTSSKGERRIRV 478 (751)
T ss_dssp EEEEEEECTTEEEEEEESSSEECS--SSEEEEEEECTTCCEEEEEEESS--CCC--SCSEEEEEEEEEEECTTSCEEEEE
T ss_pred eEEEEEecCCeEEEEeeCCeEeCC--CCceEeccCCCCCEEEEEEEEcC--CCC--CCCceEEEEEEeeecCCCCEEEEE
Confidence 999999999999999999999875 56899999999999999999875 553 356899999999999999999984
Q ss_pred ------------hhHH-------------HHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCcccccccc
Q 005362 462 ------------EGLG-------------SVILASLEQGVREGRMLLHDWLVILTAQYNEAFKLVQHNIGNSVTSQIDVE 516 (700)
Q Consensus 462 ------------~~~~-------------~~~~~~~~~~~~~~r~~l~~~li~~l~~yr~~~~~~~~~~~~~~~~ql~l~ 516 (700)
++++ .++.++.++++.|+|+||+++|++++++||+++++. ..+|+
T Consensus 479 ~T~~l~vt~~~~~v~~~~DqeA~~~llar~av~~~~~~~l~d~r~~l~~~li~il~~Yr~~~~~~-------~~~~l--- 548 (751)
T 3eh1_A 479 HTLCLPVVSSLADVYAGVDVQAAICLLANMAVDRSVSSSLSDARDALVNAVVDSLSAYGSTVSNL-------QHSAL--- 548 (751)
T ss_dssp EEEEEEEECSHHHHHHTBCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTTCC------------CC---
T ss_pred EEecccccCCHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhcccC-------CCccc---
Confidence 2222 255667788999999999999999999999998732 23454
Q ss_pred ccCccccccHHHHHHHHhcCcccccCCCCCCchHHHHHHHhhccCChHHHHhhhccceEeeccCCCCC--------CCCC
Q 005362 517 FLQCPQLQRLPRLVFALLRNPLLRFHEEGVHPDYRIYLQCLFSALEPSSLQRAVYPLLTSYSTPDKQA--------FPRH 588 (700)
Q Consensus 517 f~lp~~lk~lP~~~~~L~Ks~~l~~~~~~~s~Der~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~~--------~p~~ 588 (700)
.||++||+||+||++|+||++|+.+.. +++|||+|+++.++++++.+++.||||+||++|++.+++ +|.|
T Consensus 549 -~lpe~lkllP~~~~~L~Ks~~~~~~~~-~s~Der~~~~~~l~~~~~~~~~~~iyP~L~~~h~l~~~~~~~~~~~~~~~P 626 (751)
T 3eh1_A 549 -MAPSSLKLFPLYVLALLKQKAFRTGTS-TRLDDRVYAMCQIKSQPLVHLMKMIHPNLYRIDRLTDEGAVHVNDRIVPQP 626 (751)
T ss_dssp -EEEGGGTTHHHHHHHHHTSTTTCCSSC-CCHHHHHHHHHHHHHSCHHHHHHHHSCEEEECTTCCSTTCEEETTEEECCC
T ss_pred -cCcHHHHHHHHHHHHHHccHhhcCCCC-CChhHHHHHHHHHhCCCHHHHHhhccceEEEeecCccccCcccCCCccCCC
Confidence 479999999999999999999998643 899999999999999999999999999999999763221 2334
Q ss_pred ccc-hhhhccCCCcEEEEecCceEEEEEecCCCCCCC---------------------CCCCccHHHHHHHHHHHHhcCC
Q 005362 589 SLS-RAALITSGSPIFLLDAFTTIIVFYSSTADPTLP---------------------FPPPQDCLLRTTINKMKQERSI 646 (700)
Q Consensus 589 ~L~-~~~~~~~~~~i~LlD~~~~i~i~~g~~~~~~~~---------------------~~~~~~~~~~~~i~~l~~~R~~ 646 (700)
++. .++..+.++||||||+|++++||+|+++++++. ++++.++++|++|+++|+.|..
T Consensus 627 ~~l~ls~~~l~~~giyLlD~g~~i~lw~G~~v~~~ll~dlFGv~~~~~~~~~~~~lp~~~t~~s~~vr~ii~~lr~~r~~ 706 (751)
T 3eh1_A 627 PLQKLSAEKLTREGAFLMDCGSVFYIWVGKGCDNNFIEDVLGYTNFASIPQKMTHLPELDTLSSERARSFITWLRDSRPL 706 (751)
T ss_dssp CCBCSSGGGCCTTSEEEEECSSEEEEEECTTCCHHHHHHTTCCSSGGGCCSSBCCCCCCSSHHHHHHHHHHHHHHHTSSS
T ss_pred CcccCCHHHcccCCEEEEECCCEEEEEECCCCCHHHHHHHcCCCchhhcCcccccCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 332 222235899999999999999999999998653 2356688999999999999999
Q ss_pred CCeEEEEeCCCCcHHHHHhhccCCCCCCCCCCCCCCcHHHHHHHHHHHHHH
Q 005362 647 TPKLIFIRGGQDDATIFENYLIEEQDVDGSGLTSVMGFVSFLEEISQSVVE 697 (700)
Q Consensus 647 ~p~~~vv~~g~~~~~~f~~~LvED~~~~~~~~~~~~sy~~fl~~lh~~i~~ 697 (700)
+|+++|+|||++.+.+|.++||||+.++ .+||+|||++||++|++
T Consensus 707 ~~~l~vvr~~~~~~~~f~~~LvED~~~~------~~SY~~fL~~~h~~i~~ 751 (751)
T 3eh1_A 707 SPILHIVKDESPAKAEFFQHLIEDRTEA------AFSYYEFLLHVQQQICK 751 (751)
T ss_dssp CCEEEEEESSSSSHHHHHTTCTTSCBTT------BCCHHHHHHHHHHHHHC
T ss_pred cceEEEEeCCCchHHHHHHhCcccCCCC------CCCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999975 59999999999999974
No 2
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=100.00 E-value=5.7e-129 Score=1126.52 Aligned_cols=647 Identities=20% Similarity=0.351 Sum_probs=561.6
Q ss_pred ccccccCcCCCCHHHHHhcCCceeeEEccCCCCCCCCCCCc-ccCCCCCCCcccCcceeEecCceEec--ceEEEccCCC
Q 005362 2 AVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPV-YGSDGHMLPRCENCYAYFNTYCELEQ--WAWTCSLCGS 78 (700)
Q Consensus 2 ~vR~T~~~~P~~~~~~~~~~lP~g~~v~Pf~~~~~~~~~p~-~~~~~~~~~RC~~C~ayiNp~~~~~~--~~w~C~~C~~ 78 (700)
+||+|||+||.|++++++++||||++|+||++..+.+.+++ ++...+.|+||++|||||||||+|+. ++|+||||+.
T Consensus 45 ~~R~T~~~iP~t~~l~~~~~lPlg~~i~P~~~~~~~e~~~pvv~~~~~~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~ 124 (766)
T 3eh2_A 45 YIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHGESGPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSC 124 (766)
T ss_dssp TEEESBSEEESSHHHHHHHTCCEEEEECTTCCCCTTSCCCEEECCGGGCCCBCTTTCCBCCTTCEEEGGGTEEECTTTCC
T ss_pred eEEcccccCCCCHHHHHhCCCCeEEEEecCCcCcccCCCCCeecCCCCCCCccCCCCCEeCCceEEecCCCEEEeccccc
Confidence 79999999999999999999999999999998766554444 33345789999999999999999985 7999999999
Q ss_pred CCCCChhhhcc------cCCCCCCcccccccEEEEecCCCCccccCCCCcEEEEEEECCCCh---hHHHHHHHHHHHHHH
Q 005362 79 LNGLSSQAIAR------YTHPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSE---EFLELTRSALQAALE 149 (700)
Q Consensus 79 ~N~~p~~~~~~------~~~~~~~pEL~~~tve~~~p~~y~~~~~~~~~p~~vFvID~s~~~---~~l~~~~~~l~~~l~ 149 (700)
.|++|++|++. +.++.+||||+.|+|||++|.||+.+..++.||+|+||||||..+ |++++++++|+++|+
T Consensus 125 ~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~~vef~a~~eY~~~~~~p~pp~y~FvIDvs~~av~sg~l~~~~~si~~~L~ 204 (766)
T 3eh2_A 125 INDVPPQYFQHLDHTGKRVDAYDRPELSLGSYEFLATVDYCKNNKFPSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLD 204 (766)
T ss_dssp EEECCTTTTGGGGGSSSCCCCSCCHHHHCSEEEEECCGGGSGGGSCCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGG
T ss_pred cCCCCHHHhccccccccccccccCcccccCceeeecCHhhccCCCCCCCCEEEEEEECchhhccchHHHHHHHHHHHHHH
Confidence 99999998642 234678999999999999999998644567899999999999976 899999999999999
Q ss_pred hCCCC-------cEEEEeeecceEEEEEccCCCCceeeeeeCCCCCccccccccc-cCcc-CcCccchHhHHHHHHHHHH
Q 005362 150 AVPSG-------ALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELED-VMPL-SQFLAPVETFKENITSALE 220 (700)
Q Consensus 150 ~lp~~-------~~vgiItf~~~V~~~~l~~~~~~~~~~~~~~~~~~~~~~dl~~-~~p~-~~~l~~l~~~~~~i~~ll~ 220 (700)
.||++ ++|||||||++||||+++++..+++++ ++.|++| ++|+ ++||+|++||++.|+++|+
T Consensus 205 ~lp~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~~~q~~---------vv~dl~d~f~P~~~~~lv~l~e~~~~i~~lL~ 275 (766)
T 3eh2_A 205 FLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMM---------VVSDVADMFVPLLDGFLVNVNESRAVITSLLD 275 (766)
T ss_dssp GCCCCSSCSSCCCEEEEEEESSSEEEEECCTTCSSCEEE---------EECCTTTCCCCCCTTSSBCTTTTHHHHHHHHH
T ss_pred hCCcccccCCccceEEEEEeCCEEEEEECCCCCCCceEE---------EecChhhhccccccceeEeHHHHHHHHHHHHH
Confidence 99964 899999999999999999877666553 3467777 4786 7899999999999999999
Q ss_pred hcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccCCCcccceEEEEecCCCC-CCCCccccccccCcccCC
Q 005362 221 TLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPD-HGAGQLDTRRYGEQYASK 299 (700)
Q Consensus 221 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ll~~~g~~~~~~gkii~f~~g~pt-~GpG~l~~~~~~~~~~~~ 299 (700)
+|++++++.+ .+.+|+|+||++|+.+++..+. ||||++|++|+|+ .|||+|+.+++++.++
T Consensus 276 ~L~~~~~~~~------------~~~t~~g~al~aa~~~l~~~~~----GGkI~~F~s~lP~t~GpG~l~~r~~~~~~~-- 337 (766)
T 3eh2_A 276 QIPEMFADTR------------ETETVFVPVIQAGMEALKAAEC----AGKLFLFHTSLPIAEAPGKLKNRDDRKLIN-- 337 (766)
T ss_dssp HHHHHHTTCC------------CCCCCSHHHHHHHHHHHHHTTC----CEEEEEEECSCCCSSSTTCCCCCCCGGGTT--
T ss_pred hhhhhccCCC------------CCcchHHHHHHHHHHHhccCCC----CcEEEEEecCCCCcCCCcccccccccccCC--
Confidence 9998754322 2568999999999999986432 4999999999777 7999999999888775
Q ss_pred CcchhhccCCCcchHHHHHHHHHHHcCcEEEEeeecCCCcChhhhhhcccccceEEEEeCCCCC----CchhHHHHHHhc
Q 005362 300 GEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDD----STLPQDIYRMLS 375 (700)
Q Consensus 300 ~~~~e~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~dl~~l~~l~~~TGG~~~~y~~~~~----~~l~~dl~~~l~ 375 (700)
+++|+++++++.+||++||.+|+++||+||+|+++.+|+|++||+.|++.|||.+++|++|+. ++|.+||.|.++
T Consensus 338 -sdke~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~~F~~~~d~~~f~~dl~~~l~ 416 (766)
T 3eh2_A 338 -TDKEKTLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQLTGGSVYKYASFQVENDQERFLSDLRRDVQ 416 (766)
T ss_dssp -STTGGGGTSCSSTHHHHHHHHHHHHTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred -CcchhhhccchHHHHHHHHHHHHhCCeEEEEEEecCCCcChHHHHHHHhhcCceEEEeCCCcchhHHHHHHHHHHHHhh
Confidence 467889999999999999999999999999999999999999999999999999999999974 459999999999
Q ss_pred cCcceeeEEEEecCCCceeeeeeeccccCCCCCcceeeeccCCCceEEEEEEEecCCCCCCCCCCCcEEEEEEeeeeccC
Q 005362 376 RPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFARHTSEQPMLQIAFQYTVVVP 455 (700)
Q Consensus 376 ~~~~~~a~~rvR~S~gl~i~~~~G~~~~~~~~~~~~~i~~~d~~~s~~~~~e~~~~~~l~~~~~~~~~iQ~a~lYt~~~g 455 (700)
+++||+|+||||||+||+|+++|||++.++ .+.|.++.+|+|+|++|+|++++ ++. ....+|||+|++||+..|
T Consensus 417 ~~~gf~a~mrVR~S~glkv~~~~G~~~~~~--t~~~~l~~i~~d~s~~v~f~~~~--~l~--~~~~~~~Q~allYt~~~G 490 (766)
T 3eh2_A 417 KVVGFDAVMRVRTSTGIRAVDFFGAFYMSN--TTDVELAGLDGDKTVTVEFKHDD--RLN--EESGALLQCALLYTSCAG 490 (766)
T ss_dssp SCEEEEEEEEEEECTTEEEEEEEESCBCSS--SSCEEEEEEETTCCEEEEEEESS--CCC--TTTCEEEEEEEEEECTTS
T ss_pred hcceeeEEEEEEecCCeEEEEeECCeecCC--CCceeeccCCCCceEEEEEEecC--CCC--CCCcEEEEEEEEeEcCCC
Confidence 999999999999999999999999999864 46789999999999999999875 553 367899999999999999
Q ss_pred ccccch------------hhHH-------------HHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCcc
Q 005362 456 PEELSS------------EGLG-------------SVILASLEQGVREGRMLLHDWLVILTAQYNEAFKLVQHNIGNSVT 510 (700)
Q Consensus 456 ~~~~~~------------~~~~-------------~~~~~~~~~~~~~~r~~l~~~li~~l~~yr~~~~~~~~~~~~~~~ 510 (700)
+|++|+ ++++ .++.++.+++++++|+.|.++|+++++.|||.|+.. ++.
T Consensus 491 ~RRiRV~T~~l~vt~~~~~v~~~~Dqea~~~llar~av~~~~~~~~~~~R~~l~~~~~~~l~~Yrk~~~~~------~s~ 564 (766)
T 3eh2_A 491 QRRLRIHNLALNCCTQLADLYRNCETDTLINYMAKFAYRGVLNSPVKAVRDTLITQCAQILACYRKNCASP------SSA 564 (766)
T ss_dssp CEEEEEEEEEEEEESSHHHHHHTBCHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred CEEEEEEEEeeEecCCHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHhhccCC------CCc
Confidence 999984 2222 255566778899999999999999999999998642 234
Q ss_pred ccccccccCccccccHHHHHHHHhcCcccccCCCCCCchHHHHHHHhhccCChHHHHhhhccceEeeccCCCC--CCCCC
Q 005362 511 SQIDVEFLQCPQLQRLPRLVFALLRNPLLRFHEEGVHPDYRIYLQCLFSALEPSSLQRAVYPLLTSYSTPDKQ--AFPRH 588 (700)
Q Consensus 511 ~ql~l~f~lp~~lk~lP~~~~~L~Ks~~l~~~~~~~s~Der~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~--~~p~~ 588 (700)
+|+ .||++||+||+||++|+||++|+.+.. +++|||+|++++++++++.+++.|+||+||++|+++.+ ..|.+
T Consensus 565 ~ql----~lp~~lkllP~~~~~L~Ks~~l~~~~~-~s~Der~~~~~~l~~~~~~~~l~~iyP~L~~~h~~~~~~~~~P~~ 639 (766)
T 3eh2_A 565 GQL----ILPECMKLLPVYLNCVLKSDVLQPGAE-VTTDDRAYVRQLVTSMDVTETNVFFYPRLLPLTKSPVESTTEPPA 639 (766)
T ss_dssp CCC----CCCGGGTTHHHHHHHHHTSTTTSCCTT-CCHHHHHHHHHHHHHCCHHHHHHHHSCEEEECSSCCCSCC--CCC
T ss_pred cce----ecCHHHHHHHHHHHHHHccHhhcCCCC-CCccHHHHHHHHHHCCCHHHHHHHHhheEEEeecCCcccccCCCC
Confidence 555 479999999999999999999998543 89999999999999999999999999999999986544 24544
Q ss_pred ccchhhhccCCCcEEEEecCceEEEEEecCCCCCCC---------------------CCCCccHHHHHHHHHHHHhcCCC
Q 005362 589 SLSRAALITSGSPIFLLDAFTTIIVFYSSTADPTLP---------------------FPPPQDCLLRTTINKMKQERSIT 647 (700)
Q Consensus 589 ~L~~~~~~~~~~~i~LlD~~~~i~i~~g~~~~~~~~---------------------~~~~~~~~~~~~i~~l~~~R~~~ 647 (700)
...+... +.++||||||+|++++||+|+++++++. ++++.++++|++|+++|+.|..+
T Consensus 640 v~ls~~~-l~~~giyLlD~g~~i~lw~G~~v~~~~l~dlFgv~~~~~i~~~~~~lp~~~~~~s~~vr~ii~~lr~~~~~~ 718 (766)
T 3eh2_A 640 VRASEER-LSNGDIYLLENGLNLFLWVGASVQQGVVQSLFSVSSFSQITSGLSVLPVLDNPLSKKVRGLIDSLRAQRSRY 718 (766)
T ss_dssp BCSSGGG-CCTTCEEEEECSSEEEEEECTTCCHHHHHHHHSCSSGGGSCTTCCSCCCCSSHHHHHHHHHHHHHHTTSSSC
T ss_pred cCCcHHH-cCCCcEEEEEcCcEEEEEecCCCCHHHHHHHcCCCchhhcCcccccCCCCCCHHHHHHHHHHHHHHHhCCCC
Confidence 4333333 5899999999999999999999988642 34667889999999999999999
Q ss_pred CeEEEEeCCCCcHHHHHhhccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhh
Q 005362 648 PKLIFIRGGQDDATIFENYLIEEQDVDGSGLTSVMGFVSFLEEISQSVVEYM 699 (700)
Q Consensus 648 p~~~vv~~g~~~~~~f~~~LvED~~~~~~~~~~~~sy~~fl~~lh~~i~~~~ 699 (700)
++++|||||++.+.+|.++||||+.++| .+||+|||++|||+|+++|
T Consensus 719 ~~l~ivr~~~~~~~~f~~~LvED~~~~~-----~~SY~dfL~~lh~~i~~~l 765 (766)
T 3eh2_A 719 MKLTVVKQEDKMEMLFKHFLVEDKSLSG-----GASYVDFLCHMHKEIRQLL 765 (766)
T ss_dssp CEEEEEESSSSTHHHHHTTCTTSCCTTT-----CCCHHHHHHHHHHHHHHHC
T ss_pred ceEEEEeCCCChHHHHHHhCcccCCCCC-----CCCHHHHHHHHHHHHHHhc
Confidence 9999999998889999999999998754 5999999999999999987
No 3
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=100.00 E-value=9.4e-129 Score=1125.29 Aligned_cols=647 Identities=21% Similarity=0.349 Sum_probs=562.1
Q ss_pred ccccccCcCCCCHHHHHhcCCceeeEEccCCCCCCCCCC-CcccCCCCCCCcccCcceeEecCceEec--ceEEEccCCC
Q 005362 2 AVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAA-PVYGSDGHMLPRCENCYAYFNTYCELEQ--WAWTCSLCGS 78 (700)
Q Consensus 2 ~vR~T~~~~P~~~~~~~~~~lP~g~~v~Pf~~~~~~~~~-p~~~~~~~~~~RC~~C~ayiNp~~~~~~--~~w~C~~C~~ 78 (700)
|||+|||+||.|++++++++||||++|+||++..+.+.+ |+++...+.|+||++|||||||||+|+. ++|+||||+.
T Consensus 49 ~~R~T~n~iP~t~~l~~~~~lPlg~~i~Pl~~~~~~e~p~pvv~~~~~~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~ 128 (770)
T 3efo_B 49 FIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLYLVNHGESGPVRCNRCKAYMCPFMQFIEGGRRYQCGFCNC 128 (770)
T ss_dssp TEEESBSEEESSHHHHHHHCCCCEEEECTTCCCCTTSCCCCEECCTTTCSCBCTTTCCBSCTTCEEEGGGTEEECTTTCC
T ss_pred eEEeecccCCCCHHHHHhCCCCeEEEEEcCCCCCcccCCCCcccCCCCCCCccCCCCCCcCCceEEecCCCEEEeccccc
Confidence 799999999999999999999999999999988765554 4444456789999999999999999985 7999999999
Q ss_pred CCCCChhhhccc------CCCCCCcccccccEEEEecCCCCccccCCCCcEEEEEEECCCCh---hHHHHHHHHHHHHHH
Q 005362 79 LNGLSSQAIARY------THPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSE---EFLELTRSALQAALE 149 (700)
Q Consensus 79 ~N~~p~~~~~~~------~~~~~~pEL~~~tve~~~p~~y~~~~~~~~~p~~vFvID~s~~~---~~l~~~~~~l~~~l~ 149 (700)
.|++|++|+... .++.+||||++|+|||++|.||+....++.||+|+||||||..+ |++++++++|+++|+
T Consensus 129 ~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~tvEf~ap~eY~~~~~~p~pp~y~FvIDvs~~av~sg~l~~~~~sl~~~L~ 208 (770)
T 3efo_B 129 VNDVPPFYFQHLDHIGRRLDHYEKPELSLGSYEYVATLDYCRKSKPPNPPAFIFMIDVSYSNIKNGLVKLICEELKTMLE 208 (770)
T ss_dssp EEECCGGGCCCCCSSSCTTTGGGSHHHHCSEEEEECCGGGSGGGSCCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGG
T ss_pred cCCCchHhhccccccccccccccCcccccCceeeecCHHHhccCCCCCCcEEEEEEEcchhhccchHHHHHHHHHHHHHH
Confidence 999999986322 24578999999999999999998533467899999999999975 799999999999999
Q ss_pred hCCCC-------cEEEEeeecceEEEEEccCCCCceeeeeeCCCCCccccccccc-cCcc-CcCccchHhHHHHHHHHHH
Q 005362 150 AVPSG-------ALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELED-VMPL-SQFLAPVETFKENITSALE 220 (700)
Q Consensus 150 ~lp~~-------~~vgiItf~~~V~~~~l~~~~~~~~~~~~~~~~~~~~~~dl~~-~~p~-~~~l~~l~~~~~~i~~ll~ 220 (700)
.||++ ++|||||||+.||||++++...++++++ +.|++| ++|+ ++||+|++||++.|+++|+
T Consensus 209 ~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~q~q~~v---------v~d~~d~f~P~~~~~Lv~l~e~~~~i~~lL~ 279 (770)
T 3efo_B 209 KIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMV---------VTDVGEVFVPLLDGFLVNYQESQSVIHNLLD 279 (770)
T ss_dssp GCCCCTTSSSCSCEEEEEEESSSEEEEECCTTCSSCEEEE---------ECCTTSCCCCCSSSSSBCTTTTHHHHHHHHH
T ss_pred hCCccccccCccceEEEEEeCCEEEEEeCCCcccCceEEE---------ecccccccCCCccceeeeHHHHHHHHHHHHH
Confidence 99974 8999999999999999998777666643 456777 5786 7899999999999999999
Q ss_pred hcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccCCCcccceEEEEecCCCC-CCCCccccccccCcccCC
Q 005362 221 TLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPD-HGAGQLDTRRYGEQYASK 299 (700)
Q Consensus 221 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ll~~~g~~~~~~gkii~f~~g~pt-~GpG~l~~~~~~~~~~~~ 299 (700)
+|++++++.+ .+.+|+|+||++|+.+++..+. ||||++|++|+|+ .|||+|+.|++++.++
T Consensus 280 ~L~~~~~~~~------------~~~t~~g~al~aa~~~l~~~~~----GGkI~~F~s~lP~t~GpG~l~~r~~~~~~~-- 341 (770)
T 3efo_B 280 QIPDMFADSN------------ENETVFAPVIQAGMEALKAADC----PGKLFIFHSSLPTAEAPGKLKNRDDKKLVN-- 341 (770)
T ss_dssp HHHHHHHTCC------------CCCCCCHHHHHHHHHHHHHHTC----CEEEEEEECSCCCSSSTTCCCCCCCCCCSS--
T ss_pred hhHhhccCCC------------CCcchHHHHHHHHHHHhccCCC----CcEEEEEecCCCCcCCCccccccccccccC--
Confidence 9988753332 2568999999999999986421 4899999999777 8999999999888875
Q ss_pred CcchhhccCCCcchHHHHHHHHHHHcCcEEEEeeecCCCcChhhhhhcccccceEEEEeCCCC----CCchhHHHHHHhc
Q 005362 300 GEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTD----DSTLPQDIYRMLS 375 (700)
Q Consensus 300 ~~~~e~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~dl~~l~~l~~~TGG~~~~y~~~~----~~~l~~dl~~~l~ 375 (700)
+++|+++++++.+||++||.+|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+ .++|.+||.|.++
T Consensus 342 -t~ke~~~~~~a~~fY~~lA~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~~F~~~~~~~~f~~dl~~~l~ 420 (770)
T 3efo_B 342 -TDKEKILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLYKYNNFQMHLDRQQFLNDLRNDIE 420 (770)
T ss_dssp -CSCGGGGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred -CcchhhhhcchHHHHHHHHHHHHHcCeEEEEEEecCCccChHHHHHHHhhcCceEEEecCCcchhHHHHHHHHHHHhhh
Confidence 46788999999999999999999999999999999999999999999999999999999997 4679999999999
Q ss_pred cCcceeeEEEEecCCCceeeeeeeccccCCCCCcceeeeccCCCceEEEEEEEecCCCCCCCCCCCcEEEEEEeeeeccC
Q 005362 376 RPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFARHTSEQPMLQIAFQYTVVVP 455 (700)
Q Consensus 376 ~~~~~~a~~rvR~S~gl~i~~~~G~~~~~~~~~~~~~i~~~d~~~s~~~~~e~~~~~~l~~~~~~~~~iQ~a~lYt~~~g 455 (700)
+++||+|+||||||+||+|+++|||++.++ .+.|.++.+|+++|++|+|++++ ++. ....+|||+|++||+..|
T Consensus 421 ~~~gf~a~mrVR~S~gl~v~~~~G~~~~~~--t~~~~l~~~~~d~s~~v~f~~~~--~l~--~~~~~~~Q~allYt~~~G 494 (770)
T 3efo_B 421 KKIGFDAIMRVRTSTGFRATDFFGGILMNN--TTDVEMAAIDCDKAVTVEFKHDD--KLS--EDSGALIQCAVLYTTISG 494 (770)
T ss_dssp SCEEEEEEEEEEECTTEEEEEEESSCBCSS--SSCEEEEEEESSCCEEEEEEESS--CCB--TTTBEEEEEEEEEECTTC
T ss_pred hceeeeEEEEEEecCCeEEEEeECCeeCCC--CCceEecccCcCceEEEEEEecC--CCC--CCCcEEEEEEEEEEcCCC
Confidence 999999999999999999999999999764 45689999999999999999875 553 356899999999999999
Q ss_pred ccccch------------hhHH-------------HHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCcc
Q 005362 456 PEELSS------------EGLG-------------SVILASLEQGVREGRMLLHDWLVILTAQYNEAFKLVQHNIGNSVT 510 (700)
Q Consensus 456 ~~~~~~------------~~~~-------------~~~~~~~~~~~~~~r~~l~~~li~~l~~yr~~~~~~~~~~~~~~~ 510 (700)
+|++|+ ++++ .++.++.+++++++|+.|.++|++++..||+.|+.. + +.
T Consensus 495 ~RRiRV~T~~l~vt~~~~~v~~~~Dqea~~~llar~av~~~~~~~l~~~r~~L~~~~~~~l~~Yrk~~~~~-----~-s~ 568 (770)
T 3efo_B 495 QRRLRIHNLGLNCSSQLADLYKSCETDALINFFAKSAFKAVLHQPLKVIREILVNQTAHMLACYRKNCASP-----S-AA 568 (770)
T ss_dssp CEEEEEEEEEEEEESCHHHHHHTBCHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTSCC-----C-CT
T ss_pred CEEEEEEEechhhcccHHHHHHhcCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccCC-----C-Cc
Confidence 999984 2222 255566778899999999999999999999999632 2 33
Q ss_pred ccccccccCccccccHHHHHHHHhcCcccccCCCCCCchHHHHHHHhhccCChHHHHhhhccceEeeccCCCC--CCCCC
Q 005362 511 SQIDVEFLQCPQLQRLPRLVFALLRNPLLRFHEEGVHPDYRIYLQCLFSALEPSSLQRAVYPLLTSYSTPDKQ--AFPRH 588 (700)
Q Consensus 511 ~ql~l~f~lp~~lk~lP~~~~~L~Ks~~l~~~~~~~s~Der~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~--~~p~~ 588 (700)
+|+ .||++||+||+||++|+||++|+.+.. +++|||+|++++++++++.+++.||||+||++|+++.+ ..|.+
T Consensus 569 ~ql----~Lp~~lkllP~~~~~L~Ks~~l~~~~~-~s~Der~~~~~~l~~~~~~~~l~~iyP~L~~~h~l~~~~~~~P~~ 643 (770)
T 3efo_B 569 SQL----ILPDSMKVLPVYMNCLLKNCVLLSRPE-ISTDERAYQRQLVMTMGVADSQLFFYPQLLPIHTLDVKSTMLPAA 643 (770)
T ss_dssp TEE----EECGGGTTHHHHHHHHHHSGGGSCSSS-SCHHHHHHHHHHHHHCCHHHHHHHHSCEEEECTTCCSSSCSCCCC
T ss_pred cce----ecCHHHHHHHHHHHHHhCcHhhcCCCC-CCccHHHHHHHHHHCCCHHHHHHhhccceEEEeccccccccCCCC
Confidence 555 479999999999999999999998543 89999999999999999999999999999999986432 34544
Q ss_pred ccchhhhccCCCcEEEEecCceEEEEEecCCCCCCC---------------------CCCCccHHHHHHHHHHHHhcCCC
Q 005362 589 SLSRAALITSGSPIFLLDAFTTIIVFYSSTADPTLP---------------------FPPPQDCLLRTTINKMKQERSIT 647 (700)
Q Consensus 589 ~L~~~~~~~~~~~i~LlD~~~~i~i~~g~~~~~~~~---------------------~~~~~~~~~~~~i~~l~~~R~~~ 647 (700)
...+... +.++||||||+|++++||+|+++++++. ++++.++++|++|+++|++|..+
T Consensus 644 v~ls~~~-l~~~giyLLD~g~~i~lw~G~~v~~~l~~~lfgv~~~~~i~~~~~~lp~~~~~~s~~vr~ii~~lr~~r~~~ 722 (770)
T 3efo_B 644 VRCSESR-LSEEGIFLLANGLHMFLWLGVSSPPELIQGIFNVPSFAHINTDMTLLPEVGNPYSQQLRMIMGIIQQKRPYS 722 (770)
T ss_dssp CCSSGGG-CCTTCEEEEECSSEEEEEECTTCCHHHHHHHHSSSSGGGCCTTCCSCCCCCSSHHHHHHHHHHHHHTTCSSC
T ss_pred cCCcHHH-cCCCcEEEEECCcEEEEEecCCCCHHHHHHhcCCCchhhcCcccccCCCCCCHHHHHHHHHHHHHHHhCCCC
Confidence 4333333 5899999999999999999999998652 34677899999999999999999
Q ss_pred CeEEEEeCCCCcHHHHHhhccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhh
Q 005362 648 PKLIFIRGGQDDATIFENYLIEEQDVDGSGLTSVMGFVSFLEEISQSVVEYM 699 (700)
Q Consensus 648 p~~~vv~~g~~~~~~f~~~LvED~~~~~~~~~~~~sy~~fl~~lh~~i~~~~ 699 (700)
++++|||||++.+.+|.++|||||..+| .+||+||||+|||+|+++|
T Consensus 723 ~~l~ivr~~~~~e~~f~~~LvED~~~~~-----~~SY~dfL~~lh~~i~~~l 769 (770)
T 3efo_B 723 MKLTIVKQREQPEMVFRQFLVEDKGLYG-----GSSYVDFLCCVHKEICQLL 769 (770)
T ss_dssp CEEEEEESTTSTTHHHHTTCTTSCC--------CCCHHHHHHHHHHHHHHTC
T ss_pred ccEEEEeCCCChHHHHHHhCcccCCCCC-----CCCHHHHHHHHHHHHHHhc
Confidence 9999999999899999999999998432 5899999999999999987
No 4
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=100.00 E-value=4.7e-123 Score=1087.37 Aligned_cols=639 Identities=18% Similarity=0.344 Sum_probs=537.7
Q ss_pred CccccccCcCCCCHHHHHhcCCceeeEEccCCCCCCCCCCCcccCCCCCCCcccCcceeEecCceEec--ceEEEccCCC
Q 005362 1 MAVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYFNTYCELEQ--WAWTCSLCGS 78 (700)
Q Consensus 1 ~~vR~T~~~~P~~~~~~~~~~lP~g~~v~Pf~~~~~~~~~p~~~~~~~~~~RC~~C~ayiNp~~~~~~--~~w~C~~C~~ 78 (700)
.|||+|||+||.+++++++++||||++|+||++..+.+.+++++ ....|+||++|+|||||||+|+. ++|+||||++
T Consensus 180 ~~vR~T~n~iP~t~~l~~~~~lPlg~vv~P~a~~~~~~~~vpvv-~~~~pvRC~rCrAYiNPf~~~~~~g~~W~CnfC~~ 258 (926)
T 1m2v_B 180 DYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLN-EDGLIVRCRRCRSYMNPFVTFIEQGRRWRCNFCRL 258 (926)
T ss_dssp TTEEESBSSEESBHHHHHHHTCCCEEEECSCCSSSTTSSCCCEE-CSCCCCBCSSSCCBCCTTCEEETTTTEEECTTTCC
T ss_pred CceecccccCCCCHHHHHhCCCCeEEEEecCCCcccCCCCCCcc-CCCCCCccCCccCEecCceEEeCCCCEEEccCCCC
Confidence 37999999999999999999999999999999875433232322 23459999999999999999995 6999999999
Q ss_pred CCCCChhhhc----ccCCCCCCcccccccEEEEecCCCCccccCCCCcEEEEEEECCCCh---hHHHHHHHHHHHHHHhC
Q 005362 79 LNGLSSQAIA----RYTHPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSE---EFLELTRSALQAALEAV 151 (700)
Q Consensus 79 ~N~~p~~~~~----~~~~~~~~pEL~~~tve~~~p~~y~~~~~~~~~p~~vFvID~s~~~---~~l~~~~~~l~~~l~~l 151 (700)
.|++|.+|.. +..++.+||||+++||||++|++|+.+ ++.||+||||||+|.++ |.+++++++|+++|+.|
T Consensus 259 ~N~~P~~Y~~~~~~~~~d~~~RpEL~~~tvEyi~p~ey~~r--~p~ppvyvFvIDvS~~av~~g~l~~l~~sI~~~L~~L 336 (926)
T 1m2v_B 259 ANDVPMQMDQSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLR--QPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSI 336 (926)
T ss_dssp EEECCGGGTTTSTTCGGGGGGSHHHHCSEEEEECCGGGCSS--CCCCCBEEEEEECSHHHHHSCHHHHHHHHHHHTTTTS
T ss_pred CCCCchhhccccccCccccccCccccCceEEEEcChhhccC--CCCCcEEEEEEECCHHHHhhhHHHHHHHHHHHHHHhC
Confidence 9999998751 112367789999999999999999864 56899999999999976 67999999999999999
Q ss_pred CC---CcEEEEeeecceEEEEEccCCCC-------ceeeeeeCCCCCccccccccc-cCcc-CcCccchHhHHHHHHHHH
Q 005362 152 PS---GALFGLATFSHKIGLYDVQGAIP-------VVKNVFIPSDTEDTLSLELED-VMPL-SQFLAPVETFKENITSAL 219 (700)
Q Consensus 152 p~---~~~vgiItf~~~V~~~~l~~~~~-------~~~~~~~~~~~~~~~~~dl~~-~~p~-~~~l~~l~~~~~~i~~ll 219 (700)
|+ +++|||||||+.||||+++.+.. +.++ .++.|++| ++|+ ++||++++||++.|+++|
T Consensus 337 P~~~~~~~VGlITFds~Vh~y~l~~~~~g~k~~~~q~qm---------lvvsdl~d~f~P~~~~~Lv~l~e~~~~I~~lL 407 (926)
T 1m2v_B 337 PNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINM---------MDIADLEEPFLPRPNSMVVSLKACRQNIETLL 407 (926)
T ss_dssp CCTTSCCEECEEEESSSEEEEECCCC---------CCEE---------EEECCCSSCCCSCSSSSSEETTTTHHHHHHHH
T ss_pred CCCCCCcEEEEEEECCEEEEEecCCcccCCcccccchhh---------ccccccccccCCCcccccccHHHHHHHHHHHH
Confidence 86 79999999999999999987653 2222 34567777 4665 789999999999999999
Q ss_pred HhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccCCCcccceEEEEecCCCCCCCCccccccccCcccCC
Q 005362 220 ETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYASK 299 (700)
Q Consensus 220 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ll~~~g~~~~~~gkii~f~~g~pt~GpG~l~~~~~~~~~~~~ 299 (700)
++|++++... +++.+|+|+||++|..+|+..| |||++|++|+||.|||+|+.+++++. +
T Consensus 408 e~L~~~~~~~------------~~~~~~~G~AL~aA~~lL~~~G------GrI~~F~sg~Pt~GpG~l~~re~~~~---~ 466 (926)
T 1m2v_B 408 TKIPQIFQSN------------LITNFALGPALKSAYHLIGGVG------GKIIVVSGTLPNLGIGKLQRRNESGV---V 466 (926)
T ss_dssp HHHHHHTSSC------------CCCCCCHHHHHHHHHHHHTTTC------EEEEEEESSCCCSSTTCCCCCCC-------
T ss_pred HhhhhhhcCC------------CCCCccHHHHHHHHHHHHHhhC------CEEEEEecCCCCCCCCcccccccccc---c
Confidence 9998865332 1367999999999999999876 89999999999999999999988753 3
Q ss_pred Ccchhhc-cCCCcchHHHHHHHHHHHcCcEEEEeeecCCCcChhhhhhcccccceEEEEeCCCCCC------chhHHHHH
Q 005362 300 GEDADRA-LLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDS------TLPQDIYR 372 (700)
Q Consensus 300 ~~~~e~~-~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~dl~~l~~l~~~TGG~~~~y~~~~~~------~l~~dl~~ 372 (700)
++++|+. +++++.+||++||.+|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.+ +|.+|+.+
T Consensus 467 ~~~ke~~~ll~~a~~FYk~LA~~~~~~gisVDlF~~s~~~vdla~l~~l~~~TGG~v~~y~~F~~~~~~d~~kf~~dl~~ 546 (926)
T 1m2v_B 467 NTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKFSTEFAK 546 (926)
T ss_dssp CCTTHHHHHTSCSSTHHHHHHHHHHHHTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEESCCTTSHHHHHHHHHHHHH
T ss_pred CcccchhhhccchHHHHHHHHHHHHHcCeEEEEEEccCCCcChHHHHHHHhcCCceEEEcCCCcchhhhHHHHHHHHHHH
Confidence 6777776 9999999999999999999999999999999999999999999999999999999754 68899999
Q ss_pred HhccCcceeeEEEEecCCCceeeeeeeccccCCCCCcceeeeccCCCceEEEEEEEecCCCCCCCCCCCcEEEEEEeeee
Q 005362 373 MLSRPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFARHTSEQPMLQIAFQYTV 452 (700)
Q Consensus 373 ~l~~~~~~~a~~rvR~S~gl~i~~~~G~~~~~~~~~~~~~i~~~d~~~s~~~~~e~~~~~~l~~~~~~~~~iQ~a~lYt~ 452 (700)
.|++++||+|+||||||+||+|+++||||+.++ .++|.++.+|+++|++|+|++++ ++. ...+|||+|++||+
T Consensus 547 ~Lt~~~gf~a~mrVR~S~glkv~~~~G~~~~~~--s~~~~l~~l~~d~s~av~f~~~~--~l~---~~~~~~Q~allYT~ 619 (926)
T 1m2v_B 547 HISMDFCMETVMRARGSTGLRMSRFYGHFFNRS--SDLCAFSTMPRDQSYLFEVNVDE--SIM---ADYCYVQVAVLLSL 619 (926)
T ss_dssp HHHSCCEEEEEEEEEECTTEEEEEEESSSBCSS--TTEEEEEEECSSCCEEEEEEECS--BCC---SSEEEEEEEEEEEE
T ss_pred HhhhhhceeEEEEEEeCCCcEEEEeecCccccC--cCceEeeccCCCCEEEEEEEecc--CCC---CCcEEEEEEEEEEc
Confidence 999999999999999999999999999999764 67899999999999999999976 442 46799999999999
Q ss_pred ccCccccch------------hhH-------------HHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCC
Q 005362 453 VVPPEELSS------------EGL-------------GSVILASLEQGVREGRMLLHDWLVILTAQYNEAFKLVQHNIGN 507 (700)
Q Consensus 453 ~~g~~~~~~------------~~~-------------~~~~~~~~~~~~~~~r~~l~~~li~~l~~yr~~~~~~~~~~~~ 507 (700)
..|+|++|+ +++ +.++.+++++++.|+|+||+++|+++++.|||.+.+. ..
T Consensus 620 ~~G~RRiRV~T~~l~vt~~l~~v~~s~Dqea~~~llar~av~~~~~~~~~d~r~~L~~~li~il~~Yrk~~~~~--~~-- 695 (926)
T 1m2v_B 620 NNSQRRIRIITLAMPTTESLAEVYASADQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKKEIVVS--NT-- 695 (926)
T ss_dssp TTTEEEEEEEEEEEEEESCHHHHHHTBCHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHTCCC--TT--
T ss_pred CCCCEEEEEEeecccccCCHHHHHHhcCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhcccc--cC--
Confidence 999999984 222 2255667788899999999999999999999999853 11
Q ss_pred CccccccccccCccccccHHHHHHHHhcCcccccCCCCCCchHHHHHHHhhccCChHHHHhhhccceEeeccCCC-CC--
Q 005362 508 SVTSQIDVEFLQCPQLQRLPRLVFALLRNPLLRFHEEGVHPDYRIYLQCLFSALEPSSLQRAVYPLLTSYSTPDK-QA-- 584 (700)
Q Consensus 508 ~~~~ql~l~f~lp~~lk~lP~~~~~L~Ks~~l~~~~~~~s~Der~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~-~~-- 584 (700)
.++- +|.||++||+||+||++|+||++|+ ++. +++|||+|+++++++++++.++.||||+||++|+..+ .+
T Consensus 696 --~~~~--sl~Lp~~lkllP~~~~~L~KS~~l~-~~~-~p~Dera~~~~~l~~~~~~~l~~~iyP~L~s~h~~~~~~g~~ 769 (926)
T 1m2v_B 696 --AGGA--PLRLCANLRMFPLLMHSLTKHMAFR-SGI-VPSDHRASALNNLESLPLKYLIKNIYPDVYSLHDMADEAGLP 769 (926)
T ss_dssp --SSSS--CCEEEGGGTTHHHHHHHHHTSTTTC-SSC-CCHHHHHHHHHHHHHSCHHHHHHHHSCEEEETTTCCSSCSCC
T ss_pred --CCCc--ccccCHHHHHHHHHHHHHhcchhhC-CCC-CCccHHHHHHHHHHcCCHHHHHHhccCeEEEeccCccccccc
Confidence 2221 3568999999999999999999999 552 5569999999999999999999999999999998522 12
Q ss_pred -------------CCCC-ccchhhhccCCCcEEEEecCceEEEEEecCCCCCCC---------------------C-CCC
Q 005362 585 -------------FPRH-SLSRAALITSGSPIFLLDAFTTIIVFYSSTADPTLP---------------------F-PPP 628 (700)
Q Consensus 585 -------------~p~~-~L~~~~~~~~~~~i~LlD~~~~i~i~~g~~~~~~~~---------------------~-~~~ 628 (700)
.|.+ .|+.+ .++++++||||+|..+++|+|+++++++. + +++
T Consensus 770 ~~~~~~~~~~~~~~P~~l~Ls~~--~l~~~g~yLld~G~~i~lWvG~~~~p~ll~dlFg~~~~~~i~~~~~~lp~l~~~~ 847 (926)
T 1m2v_B 770 VQTEDGEATGTIVLPQPINATSS--LFERYGLYLIDNGNELFLWMGGDAVPALVFDVFGTQDIFDIPIGKQEIPVVENSE 847 (926)
T ss_dssp ---------CCCCCCCCBCSCST--TCCTTCEEEEECSSEEEEEECTTCCSGGGC-------------------------
T ss_pred ccccccccccccccCCcccCcHH--HhccCCEEEEECCCEEEEEecCCCCHHHHHHHhCCCchhhcCcccccCccCCCCh
Confidence 1322 23333 35899999999999999999999998763 2 456
Q ss_pred ccHHHHHHHHHHHHhcC--CCCeEEEEeCCCCc--------------HHHHHhhccCCCCCCCCCCCCCCcHHHHHHHHH
Q 005362 629 QDCLLRTTINKMKQERS--ITPKLIFIRGGQDD--------------ATIFENYLIEEQDVDGSGLTSVMGFVSFLEEIS 692 (700)
Q Consensus 629 ~~~~~~~~i~~l~~~R~--~~p~~~vv~~g~~~--------------~~~f~~~LvED~~~~~~~~~~~~sy~~fl~~lh 692 (700)
.++++|++|+++|+.|. .+++++||||+++. +.+|.++||||+.++ .+||+|||++||
T Consensus 848 ~s~~lr~iI~~lr~~r~~~~~~~l~ivr~~~~~~~~~~~~~~~~~~~~~~f~~~LvED~~~~------~~SY~dfL~~lh 921 (926)
T 1m2v_B 848 FNQRVRNIINQLRNHDDVITYQSLYIVRGASLSEPVNHASAREVATLRLWASSTLVEDKILN------NESYREFLQIMK 921 (926)
T ss_dssp CHHHHHHHHHHTTCCSSCCCCCEEEEEC------------CCHHHHHHHHHHHTCTTSSCTT------CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEEecCCCCCccccccccchhhHHHHHHHhCeecCCCC------CCCHHHHHHHHH
Confidence 78899999999999986 57899999875442 347899999999865 599999999999
Q ss_pred HHHHH
Q 005362 693 QSVVE 697 (700)
Q Consensus 693 ~~i~~ 697 (700)
++|++
T Consensus 922 ~~i~~ 926 (926)
T 1m2v_B 922 ARISK 926 (926)
T ss_dssp HHHCC
T ss_pred HHhhC
Confidence 99963
No 5
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=100.00 E-value=1.1e-122 Score=1081.08 Aligned_cols=640 Identities=18% Similarity=0.341 Sum_probs=526.1
Q ss_pred CccccccCcCCCCHHHHHhcCCceeeEEccCCCCCCCCCCCcccCCCCCCCcccCcceeEecCceEec--ceEEEccCCC
Q 005362 1 MAVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYFNTYCELEQ--WAWTCSLCGS 78 (700)
Q Consensus 1 ~~vR~T~~~~P~~~~~~~~~~lP~g~~v~Pf~~~~~~~~~p~~~~~~~~~~RC~~C~ayiNp~~~~~~--~~w~C~~C~~ 78 (700)
.|||+|||+||.+++++++++||||++|+||++..+.+.+++++ ....|+||++|+|||||||+|+. ++|+||||++
T Consensus 64 ~~vR~T~n~iP~t~~~~~~~~lPlg~vv~P~~~~~~~~~~~pvv-~~~~pvRC~~CrayiNPf~~~~~~g~~W~C~~C~~ 142 (810)
T 1pcx_A 64 DYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLN-EDGLIVRCRRCRSYMNPFVTFIEQGRRWRCNFCRL 142 (810)
T ss_dssp TTEEESBSSEESSHHHHHHHTCCCEEEECSCCSSSTTSSCCCEE-CSCCCCBCTTTCCBCCTTCEEETTTTEEECTTTCC
T ss_pred CceeeecccCCCCHHHHHhCCCCeEEEEecCCccccCCCCCCcc-CCCCCCccCCccCEecCceEEeCCCCEEEccCCCC
Confidence 37999999999999999999999999999999875433333332 23459999999999999999995 6999999999
Q ss_pred CCCCChhhh----cccCCCCCCcccccccEEEEecCCCCccccCCCCcEEEEEEECCCCh---hHHHHHHHHHHHHHHhC
Q 005362 79 LNGLSSQAI----ARYTHPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSE---EFLELTRSALQAALEAV 151 (700)
Q Consensus 79 ~N~~p~~~~----~~~~~~~~~pEL~~~tve~~~p~~y~~~~~~~~~p~~vFvID~s~~~---~~l~~~~~~l~~~l~~l 151 (700)
.|++|++|. ++..++.+||||+++||||++|++|+.+ ++.||+|+||||+|.++ |.+++++++|+++|+.|
T Consensus 143 ~N~~P~~y~~~~~~~~~d~~~RpEL~~~tvEy~~p~~y~~~--~p~pp~yvFvIDvs~~av~~g~l~~~~~si~~~L~~L 220 (810)
T 1pcx_A 143 ANDVPMQMDQSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLR--QPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSI 220 (810)
T ss_dssp EEECCGGGGC-----CCCGGGSHHHHCSEEEEECCGGGCSS--CCCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTS
T ss_pred cCCCchhhccccccCccccccCccccCceEEEEcCchhccC--CCCCcEEEEEEECChHHHhhhHHHHHHHHHHHHHHhC
Confidence 999999875 1122467889999999999999999864 56899999999999976 67999999999999999
Q ss_pred CC---CcEEEEeeecceEEEEEccCCCC-------ceeeeeeCCCCCccccccccc-cCcc-CcCccchHhHHHHHHHHH
Q 005362 152 PS---GALFGLATFSHKIGLYDVQGAIP-------VVKNVFIPSDTEDTLSLELED-VMPL-SQFLAPVETFKENITSAL 219 (700)
Q Consensus 152 p~---~~~vgiItf~~~V~~~~l~~~~~-------~~~~~~~~~~~~~~~~~dl~~-~~p~-~~~l~~l~~~~~~i~~ll 219 (700)
|+ +++|||||||+.||||+++.+.. ++++ .++.|++| ++|+ ++||++++||++.|+++|
T Consensus 221 p~~~~~~~VGlITfd~~V~~~~l~~~~~g~k~~~~q~~m---------lvv~dl~d~f~P~~~~~Lv~l~e~~~~i~~lL 291 (810)
T 1pcx_A 221 PNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINM---------MDIADLEEPFLPRPNSMVVSLKACRQNIETLL 291 (810)
T ss_dssp CCTTSCCEEEEEEESSSEEEEECCCGGGC-------CEE---------ECCCCTTCC-----TTTSEETTTTHHHHHHHH
T ss_pred CCCCCCcEEEEEEECCEEEEEecCccccCccccccchhh---------ccccccccccCCCcccccccHHHHHHHHHHHH
Confidence 87 79999999999999999986543 2222 34567777 4665 789999999999999999
Q ss_pred HhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccCCCcccceEEEEecCCCCCCCCccccccccCcccCC
Q 005362 220 ETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYASK 299 (700)
Q Consensus 220 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ll~~~g~~~~~~gkii~f~~g~pt~GpG~l~~~~~~~~~~~~ 299 (700)
++|++++... +++.+|+|+||++|..+|+..| |||++|++|+||.|||+|+.++++++ +
T Consensus 292 ~~L~~~~~~~------------~~~~~a~G~AL~~A~~lL~~~G------GrI~~F~sg~pt~GpG~l~~r~~~~~---~ 350 (810)
T 1pcx_A 292 TKIPQIFQSN------------LITNFALGPALKSAYHLIGGVG------GKIIVVSGTLPNLGIGKLQRRNESGV---V 350 (810)
T ss_dssp HHHHHHTTTC------------CCCCCCHHHHHHHHHHHHTTTC------EEEEEEESSCCCSSTTCCCC----------
T ss_pred HhhhhhccCC------------CCCCccHHHHHHHHHHHHHhcC------CEEEEEecCCCCCCCCcccccccccc---c
Confidence 9998865322 1368999999999999999866 89999999999999999999988753 3
Q ss_pred Ccchhhc-cCCCcchHHHHHHHHHHHcCcEEEEeeecCCCcChhhhhhcccccceEEEEeCCCCCC------chhHHHHH
Q 005362 300 GEDADRA-LLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDS------TLPQDIYR 372 (700)
Q Consensus 300 ~~~~e~~-~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~dl~~l~~l~~~TGG~~~~y~~~~~~------~l~~dl~~ 372 (700)
++++|+. +++++.+||++||.+|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.+ +|.+|+.+
T Consensus 351 ~~~ke~~~l~~~a~~fY~~la~~~~~~gi~VDlF~~s~~~~dla~l~~l~~~TGG~v~~y~~F~~~~~~d~~~f~~dl~~ 430 (810)
T 1pcx_A 351 NTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKFSTEFAK 430 (810)
T ss_dssp -------------CCHHHHHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEETCCTTSHHHHHHHHHHHHH
T ss_pred CcccchhhhcccchHHHHHHHHHHHHCCeEEEEEEccCCccChHHHHHHHhcCCcEEEEcCCCcchhhHHHHHHHHHHHH
Confidence 5677776 9999999999999999999999999999999999999999999999999999999754 68899999
Q ss_pred HhccCcceeeEEEEecCCCceeeeeeeccccCCCCCcceeeeccCCCceEEEEEEEecCCCCCCCCCCCcEEEEEEeeee
Q 005362 373 MLSRPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFARHTSEQPMLQIAFQYTV 452 (700)
Q Consensus 373 ~l~~~~~~~a~~rvR~S~gl~i~~~~G~~~~~~~~~~~~~i~~~d~~~s~~~~~e~~~~~~l~~~~~~~~~iQ~a~lYt~ 452 (700)
.+++++||+|+||||||+||+|+++|||++.++ .+.|.++.+|+++|++|+|++++ ++. ...+|||+|++||+
T Consensus 431 ~l~~~~gf~a~mrVR~S~gl~v~~~~G~~~~~~--~~~~~l~~~~~d~s~~v~f~~~~--~l~---~~~~~~Q~allYt~ 503 (810)
T 1pcx_A 431 HISMDFCMETVMRARGSTGLRMSRFYGHFFNRS--SDLCAFSTMPRDQSYLFEVNVDE--SIM---ADYCYVQVAVLLSL 503 (810)
T ss_dssp HHHCCCCEEEEEEEEECTTEEEEEEESSSBCSS--SSEEEESSCCSSCCEEEEEEECS--CCC---SSEEEEEEEEEEEC
T ss_pred HhhhhcceeEEEEEEcCCCeEEEEeecCccccC--cCceEeecCCCCCEEEEEEEecc--CCC---CCcEEEEEEEEEEc
Confidence 999999999999999999999999999999864 67899999999999999999976 442 46799999999999
Q ss_pred ccCccccch------------hhH-------------HHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCC
Q 005362 453 VVPPEELSS------------EGL-------------GSVILASLEQGVREGRMLLHDWLVILTAQYNEAFKLVQHNIGN 507 (700)
Q Consensus 453 ~~g~~~~~~------------~~~-------------~~~~~~~~~~~~~~~r~~l~~~li~~l~~yr~~~~~~~~~~~~ 507 (700)
..|+|++|+ +++ +.++.+++++++.++|+||+++|+++++.||+.+.+. ..
T Consensus 504 ~~G~RRiRV~T~~~~vt~~~~~v~~~~Dqea~~~llar~av~~~~~~~~~d~r~~l~~~li~il~~Yrk~~~~~--~~-- 579 (810)
T 1pcx_A 504 NNSQRRIRIITLAMPTTESLAEVYASADQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKKEIVVS--NT-- 579 (810)
T ss_dssp TTSCEEEEEEEEEEEEESCHHHHHHTBCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHCC--------
T ss_pred CCCCEEEEEEecCccccCCHHHHHHhcCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhcccc--cC--
Confidence 999999984 222 2255667788899999999999999999999999854 21
Q ss_pred CccccccccccCccccccHHHHHHHHhcCcccccCCCCCCchHHHHHHHhhccCChHHHHhhhccceEeeccCCCC-C--
Q 005362 508 SVTSQIDVEFLQCPQLQRLPRLVFALLRNPLLRFHEEGVHPDYRIYLQCLFSALEPSSLQRAVYPLLTSYSTPDKQ-A-- 584 (700)
Q Consensus 508 ~~~~ql~l~f~lp~~lk~lP~~~~~L~Ks~~l~~~~~~~s~Der~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~-~-- 584 (700)
.++- +|.||++||+||+||++|+||++|+ ++. +++|||+|++++++++++++++.||||+||++|+..++ +
T Consensus 580 --~~~~--~l~lp~~lkllP~~~~~L~ks~~l~-~~~-~p~Der~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~~g~~ 653 (810)
T 1pcx_A 580 --AGGA--PLRLCANLRMFPLLMHSLTKHMAFR-SGI-VPSDHRASALNNLESLPLKYLIKNIYPDVYSLHDMADEAGLP 653 (810)
T ss_dssp --CCSS--CCEEEGGGTTHHHHHHHHHTSTTTC-SSC-CCHHHHHHHHHHHHHSCHHHHHHHHSCEEEECTTCCSSTTSB
T ss_pred --CCCc--ccccCHHHHHHHHHHHHHhcchhcC-CCC-CCccHHHHHHHHHHcCCHHHHHHhccCEEEEeccCccccccc
Confidence 2221 3468999999999999999999999 552 55699999999999999999999999999999985321 2
Q ss_pred -------------CCCCccchhhhccCCCcEEEEecCceEEEEEecCCCCCCC---------------------C-CCCc
Q 005362 585 -------------FPRHSLSRAALITSGSPIFLLDAFTTIIVFYSSTADPTLP---------------------F-PPPQ 629 (700)
Q Consensus 585 -------------~p~~~L~~~~~~~~~~~i~LlD~~~~i~i~~g~~~~~~~~---------------------~-~~~~ 629 (700)
.|.+..++ ...++++++||||+|..+++|+|+++++++. + +++.
T Consensus 654 ~~~~~~~~~~~~~~P~~l~Ls-~~~l~~~g~yLld~G~~i~lwvg~~~~~~l~~~lFg~~~~~~~~~~~~~lp~~~~~~~ 732 (810)
T 1pcx_A 654 VQTEDGEATGTIVLPQPINAT-SSLFERYGLYLIDNGNELFLWMGGDAVPALVFDVFGTQDIFDIPIGKQEIPVVENSEF 732 (810)
T ss_dssp C--------CCBCCCCBCCSS-TTSCCTTCEEEEECSSEEEEEECTTCCHHHHHHHHSCSCGGGSCCEECCCCCCSSCHH
T ss_pred ccccccccccccccCCcccCC-HHHhCcCCEEEEECCCEEEEEeCCCCCHHHHHHHhCCCchhhcCcccccCCcCCCChH
Confidence 13222222 2235889999999999999999999987642 3 5667
Q ss_pred cHHHHHHHHHHHHhcC--CCCeEEEEeCCCCc--------------HHHHHhhccCCCCCCCCCCCCCCcHHHHHHHHHH
Q 005362 630 DCLLRTTINKMKQERS--ITPKLIFIRGGQDD--------------ATIFENYLIEEQDVDGSGLTSVMGFVSFLEEISQ 693 (700)
Q Consensus 630 ~~~~~~~i~~l~~~R~--~~p~~~vv~~g~~~--------------~~~f~~~LvED~~~~~~~~~~~~sy~~fl~~lh~ 693 (700)
++++|++|+++|+.|. .+|+++||||+++. +.+|.++||||+.++ .+||+|||++||+
T Consensus 733 ~~~l~~iI~~lr~~r~~~~~~~l~ivr~~~~~~~~~~~~~~~~~~~~~~f~~~LvED~~~~------~~SY~~fL~~lh~ 806 (810)
T 1pcx_A 733 NQRVRNIINQLRNHDDVITYQSLYIVRGASLSEPVNHASAREVATLRLWASSTLVEDKILN------NESYREFLQIMKA 806 (810)
T ss_dssp HHHHHHHHHHHHCCSSCCCCCEEEEEECCCTTCCCCHHHHHHHHHHHHHHHTTCTTSCBTT------BCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCceEEEEecCCCCCccccccccchhhHHHHHHHhCeecCCCC------CCCHHHHHHHHHH
Confidence 8899999999999986 57899999887542 347899999999864 5999999999999
Q ss_pred HHHH
Q 005362 694 SVVE 697 (700)
Q Consensus 694 ~i~~ 697 (700)
+|++
T Consensus 807 ~i~~ 810 (810)
T 1pcx_A 807 RISK 810 (810)
T ss_dssp HTCC
T ss_pred HhhC
Confidence 9863
No 6
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=100.00 E-value=4.2e-118 Score=1040.10 Aligned_cols=653 Identities=24% Similarity=0.343 Sum_probs=539.3
Q ss_pred ccccccCcCCCCHHHHHhcCCceeeEEccCCCCCCCCCCCcccCCCCCCCcccC--cceeEecCceEec--ceEEEccCC
Q 005362 2 AVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCEN--CYAYFNTYCELEQ--WAWTCSLCG 77 (700)
Q Consensus 2 ~vR~T~~~~P~~~~~~~~~~lP~g~~v~Pf~~~~~~~~~p~~~~~~~~~~RC~~--C~ayiNp~~~~~~--~~w~C~~C~ 77 (700)
|||+|||+||.|++++++++||||++|+||++..+ +|++ .++|+||++ |+|||||||+|+. ++|+||||+
T Consensus 11 ~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~~---~p~v---~~~pvRC~~~~CrayiNPf~~~~~~~~~W~C~~C~ 84 (768)
T 1m2o_A 11 GVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYDE---LNVA---PYNPVVCSGPHCKSILNPYCVIDPRNSSWSCPICN 84 (768)
T ss_dssp SEEESBSEEESSHHHHHHTCSCSEEEECTTCCCTT---CCEE---CSCCCBCCSTTTCCBCCTTSCEETTTTEECCTTTC
T ss_pred ceEeeeccCCCCHHHHhcCCCCeEEEEEeCCCCCC---CCcC---CCCCCccCCCCCCeEECCceEEeCCCCEEEcccCC
Confidence 79999999999999999999999999999997532 3443 247999999 9999999999985 699999999
Q ss_pred CCCCCChhhhcccCCCCCCcccccccEEEEecCCCCccccCCCCcEEEEEEECCCChhHHHHHHHHHHHHHHhCCCCcEE
Q 005362 78 SLNGLSSQAIARYTHPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALF 157 (700)
Q Consensus 78 ~~N~~p~~~~~~~~~~~~~pEL~~~tve~~~p~~y~~~~~~~~~p~~vFvID~s~~~~~l~~~~~~l~~~l~~lp~~~~v 157 (700)
+.|++|++|. .....+.+|||+++||||++|+. ++.||+|+||||+|.+++++++++++|+++|+.||++++|
T Consensus 85 ~~N~~P~~y~-~~~~~~~~pEL~~~tvEy~~p~~------~~~pp~~vFvIDvs~~~~~l~~l~~sl~~~L~~Lp~~~~V 157 (768)
T 1m2o_A 85 SRNHLPPQYT-NLSQENMPLELQSTTIEYITNKP------VTVPPIFFFVVDLTSETENLDSLKESIITSLSLLPPNALI 157 (768)
T ss_dssp CCCBCCGGGC-C---CCCCGGGTCSEEEEECSCC------CCSCCEEEEEEECCSCHHHHHHHHHHHHHHHHTSCTTCEE
T ss_pred CCCCCChHHc-cCCcccCChhhccCCEEEECCCC------CCCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 9999999865 23334567999999999999973 4679999999999999999999999999999999999999
Q ss_pred EEeeecceEEEEEccCCCCceeeeeeCCCCCc-------cc--cc-----cc-----cc-cCc----cCcCccchHhHHH
Q 005362 158 GLATFSHKIGLYDVQGAIPVVKNVFIPSDTED-------TL--SL-----EL-----ED-VMP----LSQFLAPVETFKE 213 (700)
Q Consensus 158 giItf~~~V~~~~l~~~~~~~~~~~~~~~~~~-------~~--~~-----dl-----~~-~~p----~~~~l~~l~~~~~ 213 (700)
||||||+.||||+++.+...+.+||.+ +.+. .+ +. ++ ++ +.| .++||+|++||++
T Consensus 158 GlITf~~~V~~y~l~~~~~~~~~V~~g-~k~~~~~q~~~~l~~l~~~~~~~~~~~~~~~~f~p~~~~~~~~lv~l~e~~~ 236 (768)
T 1m2o_A 158 GLITYGNVVQLHDLSSETIDRCNVFRG-DREYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEF 236 (768)
T ss_dssp EEEEESSEEEECCCSSSSSEEEEEEET-TSCCCHHHHHHHHHSCCCC---------------CCSSSGGGGSEEHHHHHH
T ss_pred EEEEECCEEEEEECCCCCCcceeeecC-CccccHHHHHHHHhhccccccCCccccccccccccccCCccceeeeHHHHHH
Confidence 999999999999999877666777764 2220 01 11 21 34 233 4789999999999
Q ss_pred HHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccCCCcccceEEEEecCCCCCCCCcccccccc
Q 005362 214 NITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYG 293 (700)
Q Consensus 214 ~i~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ll~~~g~~~~~~gkii~f~~g~pt~GpG~l~~~~~~ 293 (700)
.|+++|++|+++ .|..+.+ +++.||+|+||++|..+|+...++ .||||++|++|+||.|||+|+.++++
T Consensus 237 ~i~~lL~~L~~~-~~~~~~~--------~~~~~~~G~Al~~A~~ll~~~~~~--~GGrI~~F~sg~pt~GpG~l~~r~~~ 305 (768)
T 1m2o_A 237 KLNQLLENLSPD-QWSVPAG--------HRPLRATGSALNIASLLLQGCYKN--IPARIILFASGPGTVAPGLIVNSELK 305 (768)
T ss_dssp HHHHHHHTCCCS-CSCCCTT--------BCCCCCHHHHHHHHHHHHHHHCTT--SCCEEEEEESSCCCSSSSCCSCSBTT
T ss_pred HHHHHHHhcccc-ccccCCC--------CCCcccHHHHHHHHHHHHhhccCC--CCcEEEEEeCCCCCCCCccccccccc
Confidence 999999999985 3432221 247799999999999999853211 14899999999999999999999999
Q ss_pred CcccCCC-cchh-hccCCCcchHHHHHHHHHHHcCcEEEEeeecCCCcChhhhhhcccccceEEEEeCCCCCCchhHHHH
Q 005362 294 EQYASKG-EDAD-RALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIY 371 (700)
Q Consensus 294 ~~~~~~~-~~~e-~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~dl~~l~~l~~~TGG~~~~y~~~~~~~l~~dl~ 371 (700)
+.+|++. +++| +++++++.+||++||.+|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.++|.++++
T Consensus 306 ~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~~dla~l~~l~~~TGG~v~~y~~f~~~~~~~~l~ 385 (768)
T 1m2o_A 306 DPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYL 385 (768)
T ss_dssp SCCCCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCSHHHHHHHHHHHTCCEEEESCTTSHHHHHHHH
T ss_pred cccccccccccchhhhcCchHHHHHHHHHHHHHCCeEEEEEEccCCccChHHHhhHhhcCCceEEEcCCCchHHHHHHHH
Confidence 9888753 4554 6899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcc------CcceeeEEEEecCCCceeeeeeeccccCCC--------------CCcceeeeccCCCceEEEEEEEecC
Q 005362 372 RMLSR------PYAFNCIMRLRTSSEFKPGHSYGHFFPDPQ--------------YENVQHIICCDSYATYAYDFDFANA 431 (700)
Q Consensus 372 ~~l~~------~~~~~a~~rvR~S~gl~i~~~~G~~~~~~~--------------~~~~~~i~~~d~~~s~~~~~e~~~~ 431 (700)
|.|++ ++||+|+||||||+||+|+++|||++..++ ..+.|.++.+|+++|++|+|++++.
T Consensus 386 r~l~~~~~~~~~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~~vsd~~ig~~~t~~~~l~~~~~d~t~~v~f~~~~~ 465 (768)
T 1m2o_A 386 RLFAKDEEGYLKMAFNGNMAVKTSKDLKVQGLIGHASAVKKTDANNISESEIGIGATSTWKMASLSPYHSYAIFFEIANT 465 (768)
T ss_dssp HTTCBCTTSSBSCEEEEEEEEEECTTEEEEEEESSCEECCSCCCSCBCSSCSSBCSCSEEEEEEECTTCCEEEEEEECCC
T ss_pred HHHhhccccccceEEEEEEEEEecCCceEEEeecCccccccccccccCcceeccCCCceEEeecCCCCCEEEEEEEeccc
Confidence 99998 689999999999999999999999996432 1357999999999999999999874
Q ss_pred CCC-------CCC--CCCCcEEEEEEeeeeccCccccch-------------hhHHH-------------HHHHHhhCCH
Q 005362 432 AGF-------ARH--TSEQPMLQIAFQYTVVVPPEELSS-------------EGLGS-------------VILASLEQGV 476 (700)
Q Consensus 432 ~~l-------~~~--~~~~~~iQ~a~lYt~~~g~~~~~~-------------~~~~~-------------~~~~~~~~~~ 476 (700)
... ... ....+|||+|++||+..|+|++|+ +++++ ++.++.++.+
T Consensus 466 ~~~~~~~~~~~l~~~~~~~~~iQ~a~lYt~~~G~rriRV~T~~~~~t~~~~~~v~~~~Dqea~~~llar~av~~~~~~~~ 545 (768)
T 1m2o_A 466 AANSNPMMSAPGSADRPHLAYTQFITTYQHSSGTNRIRVTTVANQLLPFGTPAIAASFDQEAAAVLMARIAVHKAETDDG 545 (768)
T ss_dssp -----------------CEEEEEEEEEEEETTTEEEEEEEEEEEEEECTTCHHHHHTBCHHHHHHHHHHHHHHHTTSSCH
T ss_pred cccccccccccccccCCCcEEEEEEEEEEcCCCCEEEEEEeecccccCccHHHHHHhcCHHHHHHHHHHHHHHHHhcCCH
Confidence 321 000 246899999999999999999883 22222 4455667889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCccccccccccCccccccHHHHHHHHhcCcccccCCCCCCchHHHHHHH
Q 005362 477 REGRMLLHDWLVILTAQYNEAFKLVQHNIGNSVTSQIDVEFLQCPQLQRLPRLVFALLRNPLLRFHEEGVHPDYRIYLQC 556 (700)
Q Consensus 477 ~~~r~~l~~~li~~l~~yr~~~~~~~~~~~~~~~~ql~l~f~lp~~lk~lP~~~~~L~Ks~~l~~~~~~~s~Der~~~~~ 556 (700)
.++|+||++++++++..|..+.+ ..| + +|.||++|++||+|||+|+||++|+.++ ++||||+|+++
T Consensus 546 ~d~r~~l~~~li~l~~~~~~Yrk----~~~----~----~l~lp~~lk~lP~~~~~L~ks~~l~~~~--~spDer~~~~~ 611 (768)
T 1m2o_A 546 ADVIRWLDRTLIKLCQKYADYNK----DDP----Q----SFRLAPNFSLYPQFTYYLRRSQFLSVFN--NSPDETAFYRH 611 (768)
T ss_dssp HHHHHHHHHHHHHHHHHHSBCCT----TCG----G----GCBCCTTTTHHHHHHHHHHHSTTTCCTT--SCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc----CCc----c----ccccCHHHHHHHHHHHHHhcccccCCCC--CChhHHHHHHH
Confidence 99999999999999887666555 223 2 4568999999999999999999999875 89999999999
Q ss_pred hhccCChHHHHhhhccceEeeccCCCCCCCCCccchhhhccCCCcEEEEecCceEEEEEecCCCCCC--CCC-CCccHHH
Q 005362 557 LFSALEPSSLQRAVYPLLTSYSTPDKQAFPRHSLSRAALITSGSPIFLLDAFTTIIVFYSSTADPTL--PFP-PPQDCLL 633 (700)
Q Consensus 557 ~l~~~~~~~~~~~iyP~L~~~~~~~~~~~p~~~L~~~~~~~~~~~i~LlD~~~~i~i~~g~~~~~~~--~~~-~~~~~~~ 633 (700)
.++++++.+++.||||+||++|..+ .|.+.++++.. +.+++|||||+|++++||+|++++++. .|+ .++.+.+
T Consensus 612 ~l~~~~~~~~l~~iyP~L~~~~~~~---~P~~v~Ls~~~-l~~~gi~LLD~g~~i~i~~G~~v~~~~~~~~~~~~~~~~~ 687 (768)
T 1m2o_A 612 IFTREDTTNSLIMIQPTLTSFSMED---DPQPVLLDSIS-VKPNTILLLDTFFFILIYHGEQIAQWRKAGYQDDPQYADF 687 (768)
T ss_dssp HHTTSCHHHHHHHHSCEEEEECSSS---CCEECCSBGGG-CCTTCEEEEECSSEEEEEECHHHHHHHHHTGGGSTTCHHH
T ss_pred HHHcCCHHHHHHhhCCeEEEecCCC---CCcceeCcHHH-cCCCCEEEEECCCEEEEEECCcchHHHhcccCCCchhhhH
Confidence 9999999999999999999999742 35444444443 589999999999999999999998633 354 5666666
Q ss_pred HHH-------HHHHHHhcCCCCeEEEEeCCCCcHHHHHhhccCCCCCC-----CCC-C-CCCCcHHHHHHHHHHHHHH
Q 005362 634 RTT-------INKMKQERSITPKLIFIRGGQDDATIFENYLIEEQDVD-----GSG-L-TSVMGFVSFLEEISQSVVE 697 (700)
Q Consensus 634 ~~~-------i~~l~~~R~~~p~~~vv~~g~~~~~~f~~~LvED~~~~-----~~~-~-~~~~sy~~fl~~lh~~i~~ 697 (700)
+++ +++|.++|++.|++++++||++++|+|.++|+||..-. |+. . +.+.||.+|++||||.|+.
T Consensus 688 ~~ll~~p~~~a~~i~~~R~p~Pr~i~~~~~~sqarfl~s~L~p~~~~~~~~~~~~~~i~tdd~S~~~f~~~L~k~~v~ 765 (768)
T 1m2o_A 688 KALLEEPKLEAAELLVDRFPLPRFIDTEAGGSQARFLLSKLNPSDNYQDMARGGSTIVLTDDVSLQNFMTHLQQVAVS 765 (768)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCCEEEEEETTCGGGHHHHTTSBCC-----------CCCCCCSCCHHHHHHHHHHHHCC
T ss_pred HHHhhhhHHHHHHHHhcCCCCceEEEECCCCcHHHHHHHHcCCCccccccccCCccccccCCcCHHHHHHHHHHHHhc
Confidence 544 45778899999999999999999999999999998621 111 1 5689999999999999853
No 7
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=100.00 E-value=1.4e-115 Score=1017.75 Aligned_cols=651 Identities=21% Similarity=0.280 Sum_probs=536.2
Q ss_pred ccccccCcCCCCHHHHHhcCCceeeEEccCCCCCCCCCCCcccCCCCCCCcccC--cceeEecCceEec--ceEEEccCC
Q 005362 2 AVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCEN--CYAYFNTYCELEQ--WAWTCSLCG 77 (700)
Q Consensus 2 ~vR~T~~~~P~~~~~~~~~~lP~g~~v~Pf~~~~~~~~~p~~~~~~~~~~RC~~--C~ayiNp~~~~~~--~~w~C~~C~ 77 (700)
|||+|||+||.+++++++++||||++|+||++.++ +|++. ++|+||++ |+|||||||+|+. ++|+||||+
T Consensus 20 ~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~~---~p~v~---~~pvRC~~~~CrayiNPf~~~~~~~~~W~C~~C~ 93 (769)
T 2nut_A 20 GVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPD---LPPIQ---YEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCY 93 (769)
T ss_dssp SEEESBSSBCSSHHHHTTCSSCCEEEECTTCCCSC---CCCBC---SCCCBCSSTTCCCBCCTTSEEETTTTEEECSSSC
T ss_pred cccceeccCCCChHHHhcccCCeEEEEeeCCCCCC---CCcCC---CCCCcCCCCCCCeEECCceEEeCCCCEEEccCCC
Confidence 79999999999999999999999999999997632 34432 47999999 9999999999984 699999999
Q ss_pred CCCCCChhhhcccCCCCCCccc--ccccEEEEecCCCCccccCCCCcEEEEEEECCCChhHHHHHHHHHHHHHHhCCCCc
Q 005362 78 SLNGLSSQAIARYTHPQSCAEM--ISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGA 155 (700)
Q Consensus 78 ~~N~~p~~~~~~~~~~~~~pEL--~~~tve~~~p~~y~~~~~~~~~p~~vFvID~s~~~~~l~~~~~~l~~~l~~lp~~~ 155 (700)
+.|++|++|. .....+.+||| +++||||++|++| +.||+|+||||+|.++..+++++++|+++|+.||+++
T Consensus 94 ~~N~~P~~Y~-~~~~~~~~pEL~p~~~tvEy~~~~~~------p~pp~~vFvIDvS~~a~~l~~l~~si~~~L~~Lp~~~ 166 (769)
T 2nut_A 94 QRNQFPPSYA-GISELNQPAELLPQFSSIEYVVLRGP------QMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTA 166 (769)
T ss_dssp CEEECCGGGT-TCBTTBCCGGGSGGGSSEEEEECSSC------CCCCEEEEEEECCSCHHHHHHHHHHHHHHHTTSCTTC
T ss_pred CCCCCChHHc-cCCcccCChhhcCCCCcEEEEccCCC------CCCCEEEEEEECCccHHHHHHHHHHHHHHHHhCCCCc
Confidence 9999999975 33335667999 8999999999986 5689999999999999999999999999999999999
Q ss_pred EEEEeeecceEEEEEccCCCCceeeeeeCCCCCc-------ccccc----c-----ccc--CccCcCccchHhHHHHHHH
Q 005362 156 LFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTED-------TLSLE----L-----EDV--MPLSQFLAPVETFKENITS 217 (700)
Q Consensus 156 ~vgiItf~~~V~~~~l~~~~~~~~~~~~~~~~~~-------~~~~d----l-----~~~--~p~~~~l~~l~~~~~~i~~ 217 (700)
+|||||||++||||+++.+...+++||.+..... ..+.| + +|. +|+++||+|++|+++.|++
T Consensus 167 ~VGlITf~~~v~~y~l~~~~~~~~~vf~G~k~~~~~q~~~ml~v~d~~~~~~~~~~~~~f~~p~~~~lv~~~e~~~~i~~ 246 (769)
T 2nut_A 167 LVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTD 246 (769)
T ss_dssp EEEEEEESSEEEEEESSCCSSCEEEEEETTSCCCSHHHHHHHC-------------------CCCSSSEEHHHHHHHHHH
T ss_pred eEEEEEeCCEEEEEeCCCCCCccceeecCCccccHHHHHHHhCCCCcccccccccccccCCCcccceeeeHHHHHHHHHH
Confidence 9999999999999999988877788887532100 11222 2 453 5678999999999999999
Q ss_pred HHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccCCCcccceEEEEecCCCCCCCCccccccccCccc
Q 005362 218 ALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYA 297 (700)
Q Consensus 218 ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ll~~~g~~~~~~gkii~f~~g~pt~GpG~l~~~~~~~~~~ 297 (700)
+|++|++. .|....+ +++.+|+|+||++|..+|+...++ .||||++|++|+||.|||+|+.+++++.+|
T Consensus 247 lLe~L~~~-~~~~~~~--------~~~~~a~G~Al~~A~~lL~~~~~~--~GGrI~~F~sg~pt~GpG~l~~r~~~~~~r 315 (769)
T 2nut_A 247 LLGELQRD-PWPVPQG--------KRPLRSSGVALSIAVGLLECTFPN--TGARIMMFIGGPATQGPGMVVGDELKTPIR 315 (769)
T ss_dssp HHHHCCCC-SSCCCTT--------BCCCCCHHHHHHHHHHHHHHHSCS--SCCEEEEEESSCCCSSSSCCSCSBTTSCCC
T ss_pred HHHhcccc-cccccCC--------CCCccchHHHHHHHHHHHhhcccC--CCcEEEEEeCCCCCCCCCCCcCcccccccc
Confidence 99999984 2432221 247799999999999999954211 248999999999999999999999998888
Q ss_pred CCC-cchh-hccCCCcchHHHHHHHHHHHcCcEEEEeeecCCCcChhhhhhcccccceEEEEeCCCCCCchhHHHHHHhc
Q 005362 298 SKG-EDAD-RALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIYRMLS 375 (700)
Q Consensus 298 ~~~-~~~e-~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~dl~~l~~l~~~TGG~~~~y~~~~~~~l~~dl~~~l~ 375 (700)
++. +++| +++++++.+||++||.+|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.++|.++|+|.|+
T Consensus 316 s~~d~~ke~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~vdla~l~~l~~~TGG~~~~~~~F~~~~~~~~l~~~~~ 395 (769)
T 2nut_A 316 SWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFT 395 (769)
T ss_dssp CHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCCHHHHTHHHHHSSCCEEEESCSSSHHHHHHHHHTTC
T ss_pred cccccccchhhhccchHHHHHHHHHHHHHCCeEEEEEeccCCccChHHHHHHhhcCCceEEEcCCCchhhHHHHHHHHHh
Confidence 753 5665 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c------CcceeeEEEEecCCCceeeeeeeccccCCC-------------CCcceeeeccCCCceEEEEEEEecCCC--C
Q 005362 376 R------PYAFNCIMRLRTSSEFKPGHSYGHFFPDPQ-------------YENVQHIICCDSYATYAYDFDFANAAG--F 434 (700)
Q Consensus 376 ~------~~~~~a~~rvR~S~gl~i~~~~G~~~~~~~-------------~~~~~~i~~~d~~~s~~~~~e~~~~~~--l 434 (700)
+ ++||+|+||||||+||+|+++|||++..++ ..+.|+++.+|+++|++|+|++++... +
T Consensus 396 ~~~~~~l~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~vsd~~~g~~~t~~~~l~~~~~d~s~~v~f~~~~~~~~~l 475 (769)
T 2nut_A 396 KDMHGQFKMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNAPI 475 (769)
T ss_dssp BCTTSCBSCEEEEEEEEEECTTEEEEEEESSCEECCCCCTTBCSSCCSBCSCSEEEEEEECTTCCEEEEEEEC-------
T ss_pred hhcccccceEEEEEEEEEecCCeEEEeeeccccccccccCccccceeccCCCceEEeecCCCCCEEEEEEEecCcccccc
Confidence 8 689999999999999999999999985422 134699999999999999999987421 3
Q ss_pred CCCCCCCcEEEEEEeeeeccCccccch---------------hhHHH-------------HHHHHhhCCHHHHHHHHHHH
Q 005362 435 ARHTSEQPMLQIAFQYTVVVPPEELSS---------------EGLGS-------------VILASLEQGVREGRMLLHDW 486 (700)
Q Consensus 435 ~~~~~~~~~iQ~a~lYt~~~g~~~~~~---------------~~~~~-------------~~~~~~~~~~~~~r~~l~~~ 486 (700)
+ ....+|||+|++||+..|+|++|+ +++++ ++.++.++.+.++|+||+++
T Consensus 476 ~--~~~~~~~Q~a~lYt~~~G~rRiRV~T~~~~~t~~~~~~~~v~~~~Dqea~~~llar~a~~~~~~~~~~d~~~~ld~~ 553 (769)
T 2nut_A 476 P--QGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAETEEGPDVLRWLDRQ 553 (769)
T ss_dssp -----CCEEEEEEEEEEETTSCEEEEEEEEEECBCCGGGHHHHHHHTBCHHHHHHHHHHHHHHHHTTC---CHHHHHHHH
T ss_pred C--CCCeEEEEEEEEEECCCCCEEEEEEeecccccCCcccHHHHHHhcCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 2 357899999999999999999873 12222 44556677889999999999
Q ss_pred HHHHHHHHHHHhhhhcccCCCCccccccccccCccccccHHHHHHHHhcCcccccCCCCCCchHHHHHHHhhccCChHHH
Q 005362 487 LVILTAQYNEAFKLVQHNIGNSVTSQIDVEFLQCPQLQRLPRLVFALLRNPLLRFHEEGVHPDYRIYLQCLFSALEPSSL 566 (700)
Q Consensus 487 li~~l~~yr~~~~~~~~~~~~~~~~ql~l~f~lp~~lk~lP~~~~~L~Ks~~l~~~~~~~s~Der~~~~~~l~~~~~~~~ 566 (700)
+++++..|..+.+ .+| + +|.||++|++||+|||+|+||++|+.++ ++||||+|+++.++++++.++
T Consensus 554 li~l~~~~~~Yrk----~~~----~----sl~lp~~lkllP~~~~~L~ks~~l~~~~--~spDer~~~~~~l~~~~~~~~ 619 (769)
T 2nut_A 554 LIRLCQKFGEYHK----DDP----S----SFRFSETFSLYPQFMFHLRRSSFLQVFN--NSPDESSYYRHHFMRQDLTQS 619 (769)
T ss_dssp HHHHHHHHCBCCT----TCG----G----GCBCCTTTTTHHHHHHHHHHSTTTCCTT--SCHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHhC----cCc----c----cccccHHHHHHHHHHHHHhcccccCCCC--CCccHHHHHHHHHHcCCHHHH
Confidence 9999887766655 223 2 4568999999999999999999999875 899999999999999999999
Q ss_pred HhhhccceEeeccCCCCCCCCCccchhhhccCCCcEEEEecCceEEEEEecCCCCCC--CCC-CCccHHHHH-------H
Q 005362 567 QRAVYPLLTSYSTPDKQAFPRHSLSRAALITSGSPIFLLDAFTTIIVFYSSTADPTL--PFP-PPQDCLLRT-------T 636 (700)
Q Consensus 567 ~~~iyP~L~~~~~~~~~~~p~~~L~~~~~~~~~~~i~LlD~~~~i~i~~g~~~~~~~--~~~-~~~~~~~~~-------~ 636 (700)
+.||||+||++|..+ .|.+.+++... +.+++|||||+|++++||+|++++++. .++ +|+++.+++ .
T Consensus 620 ~~~iyP~L~~~~~~~---~P~~v~ls~~~-l~~~gi~LLD~g~~i~i~~G~~v~~w~~~~~~~~p~~~~~~~~l~~p~~~ 695 (769)
T 2nut_A 620 LIMIQPILYAYSFSG---PPEPVLLDSSS-ILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDD 695 (769)
T ss_dssp HHHHSCEEEEECSSS---SCEECCSSGGG-CCTTCEEEEECSSEEEEEECHHHHHHHHHTTTTSGGGHHHHHHHHHHHHH
T ss_pred HHhhcCEEEeccCCC---CCCceeCCHHH-ccCCCEEEEECCCEEEEEECCcchHHHhCCCCCCchhhhHHHHHHhHHHH
Confidence 999999999999743 25444444443 588999999999999999999997633 355 677777665 5
Q ss_pred HHHHHHhcCCCCeEEEEeCCCCcHHHHHhhccCCCCC-----CC---CCC--CCCCcHHHHHHHHHHHHH
Q 005362 637 INKMKQERSITPKLIFIRGGQDDATIFENYLIEEQDV-----DG---SGL--TSVMGFVSFLEEISQSVV 696 (700)
Q Consensus 637 i~~l~~~R~~~p~~~vv~~g~~~~~~f~~~LvED~~~-----~~---~~~--~~~~sy~~fl~~lh~~i~ 696 (700)
+++|.++|+|+|++++++||++|+|+|.++|.+...- +| +.. +.+.||..|+.||+|.+.
T Consensus 696 a~~i~~~R~p~Pr~i~~~~g~sqaRfl~sklnps~~~~~~~~~~~~~~~~~~tddvsl~~f~~~l~~~~v 765 (769)
T 2nut_A 696 AQEILHSRFPMPRYIDTEHGGSQARFLLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLAV 765 (769)
T ss_dssp HHHHHHHSSSCCEEEEEETTCSTTHHHHHHCC----------------------CCSHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCCeEEEEcCCCcHHHHHHHhcCCcccccCCCcCCCcCCccccccccCHHHHHHHHHHHhh
Confidence 5788899999999999999999999999999984331 12 111 679999999999999874
No 8
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=99.39 E-value=8.2e-14 Score=105.91 Aligned_cols=41 Identities=22% Similarity=0.557 Sum_probs=37.3
Q ss_pred CCCCCcccC--cceeEecCceEec--ceEEEccCCCCCCCChhhh
Q 005362 47 GHMLPRCEN--CYAYFNTYCELEQ--WAWTCSLCGSLNGLSSQAI 87 (700)
Q Consensus 47 ~~~~~RC~~--C~ayiNp~~~~~~--~~w~C~~C~~~N~~p~~~~ 87 (700)
.+.|+||++ |+|||||||+|+. ++|+||||+..|++|++|.
T Consensus 6 ~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~~Y~ 50 (59)
T 2yrc_A 6 SGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYA 50 (59)
T ss_dssp CCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCSCCS
T ss_pred CCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCCCCHHHh
Confidence 467999999 9999999999995 6999999999999999853
No 9
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=98.98 E-value=1e-07 Score=105.01 Aligned_cols=250 Identities=11% Similarity=0.048 Sum_probs=162.8
Q ss_pred cEEEEEEECCCChh----HHHHHHHHHHHHHHhCCCCcEEEEeeecceEEEEEccCCCCceeeeeeCCCCCccccccccc
Q 005362 122 PVYVAAVDLSSSEE----FLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELED 197 (700)
Q Consensus 122 p~~vFvID~s~~~~----~l~~~~~~l~~~l~~lp~~~~vgiItf~~~V~~~~l~~~~~~~~~~~~~~~~~~~~~~dl~~ 197 (700)
--++||||+|.+.. .++.+++++...++.|+++.+||||+|++....+--
T Consensus 78 ~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~drv~lV~Fs~~a~~~~p-------------------------- 131 (464)
T 4fx5_A 78 NVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGARVVYP-------------------------- 131 (464)
T ss_dssp EEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTTCEEEEEEESSSEEEEES--------------------------
T ss_pred ceEEEEEEcCcccCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEEcCceEEEec--------------------------
Confidence 45999999999864 588999999999999999999999999987664310
Q ss_pred cCccCcCccch-HhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccCCCcccceEEEEe
Q 005362 198 VMPLSQFLAPV-ETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFL 276 (700)
Q Consensus 198 ~~p~~~~l~~l-~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ll~~~g~~~~~~gkii~f~ 276 (700)
+...+.+. ...+..+.+.|+.|... +++.++.||..|..++....+ ....|++++
T Consensus 132 ---~t~~l~~~~~~~~~~l~~~I~~L~~~------------------GgT~l~~aL~~A~~~l~~~~~---~~~~IILLT 187 (464)
T 4fx5_A 132 ---TGGQLLRADYQSRAAAKEAVGRLHAN------------------GGTAMGRWLAQAGRIFDTAPS---AIKHAILLT 187 (464)
T ss_dssp ---SSSSCEECSHHHHHHHHHHHHTCCCC------------------SCCCHHHHHHHHHHHHTTCTT---SEEEEEEEE
T ss_pred ---CCcccccCCHHHHHHHHHHHHcCCCC------------------CCCcHHHHHHHHHHHHhcCCC---CCCEEEEEc
Confidence 00001111 23556667777777532 357899999999999976432 135899999
Q ss_pred cCCCCCCCCccccccccCcccCCCcchhhccCCCcchHHHHHHHHHHHcCcEEEEeeecCCCcChhhhhhcccccceEEE
Q 005362 277 SGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLF 356 (700)
Q Consensus 277 ~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~dl~~l~~l~~~TGG~~~ 356 (700)
+|.++.+.. .... -+.+....+|.|..|.++. ..|...|..++..|||..+
T Consensus 188 DG~~~~~~~--------------------------~~l~--~~~~a~~~~i~i~tiGiG~-~~d~~~L~~IA~~tgG~~~ 238 (464)
T 4fx5_A 188 DGKDESETP--------------------------ADLA--RAIQSSIGNFTADCRGIGE-DWEPKELRKIADALLGTVG 238 (464)
T ss_dssp SSCCTTSCH--------------------------HHHH--HHHHHHTTTCEEEEEEESS-SSCHHHHHHHHHHTTCCEE
T ss_pred CCCCCCCCh--------------------------HHHH--HHHHHhcCCCeEEEEEeCC-ccCHHHHHHHHHhCCCEEE
Confidence 998764210 0011 1222345788888888764 4788899999999999988
Q ss_pred EeCCCCCCchhH---HHHHHhccCcceeeEEEEecCCCceeeeeee--c----cccCCCC-----CcceeeeccCCCceE
Q 005362 357 LYSSTDDSTLPQ---DIYRMLSRPYAFNCIMRLRTSSEFKPGHSYG--H----FFPDPQY-----ENVQHIICCDSYATY 422 (700)
Q Consensus 357 ~y~~~~~~~l~~---dl~~~l~~~~~~~a~~rvR~S~gl~i~~~~G--~----~~~~~~~-----~~~~~i~~~d~~~s~ 422 (700)
+.++.+ .+.. ++...+.....-++.+++++.+|+.+..+.. + ....... ...+.++.+ .+.+-
T Consensus 239 ~v~d~~--~L~~~f~~i~~~~~s~~~~dv~l~l~~~~g~~v~~v~~v~P~~~~l~~~~~~~~~~~~~~v~lG~l-~~e~r 315 (464)
T 4fx5_A 239 IIRDPA--TLAEDFREMTAKSMGKEVADVALRLWAPKGATIRYVKQVSPNLADLSGMRVPGDNPLTGDYPTGAW-GAESR 315 (464)
T ss_dssp EESSGG--GHHHHHHHHHHHHHTCCEEEEEEEEECCTTCEEEEEEEEESBCEECGGGCEECSSTTEEEEEEEEE-SSEEE
T ss_pred EcCCHH--HHHHHHHHHHHHhhchheeeeEEEEEeCCCcEEEEEEeecccccccCcccccCCCCcEEEEECCcC-CCCeE
Confidence 877553 3333 3333344567889999999999998876632 1 1111100 122445566 56666
Q ss_pred EEEEEEecCCCCCCCCCCCcE-EEEEEeeeeccCc
Q 005362 423 AYDFDFANAAGFARHTSEQPM-LQIAFQYTVVVPP 456 (700)
Q Consensus 423 ~~~~e~~~~~~l~~~~~~~~~-iQ~a~lYt~~~g~ 456 (700)
.|.+++.-+. .+ .+...- .++.+.|....|.
T Consensus 316 ~~lv~l~v~~-~~--~g~~~~~~~v~~~y~~~~~~ 347 (464)
T 4fx5_A 316 EYHICVEVEP-GN--IGQEKLAGRVQLVAKDAGGA 347 (464)
T ss_dssp EEEEEEECCC-CC--TTCEEEEEEEEEEEEETTEE
T ss_pred EEEEEEEcCC-CC--CCceeEEEEEEEEEcCCCcc
Confidence 6666665432 11 233333 6888889875544
No 10
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=98.85 E-value=7e-08 Score=95.30 Aligned_cols=157 Identities=15% Similarity=0.175 Sum_probs=115.9
Q ss_pred CCcEEEEEEECCCChh-------HHHHHHHHHHHHHHhCCCCcEEEEeeecceEEEEEccCCCCceeeeeeCCCCCcccc
Q 005362 120 ARPVYVAAVDLSSSEE-------FLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLS 192 (700)
Q Consensus 120 ~~p~~vFvID~s~~~~-------~l~~~~~~l~~~l~~lp~~~~vgiItf~~~V~~~~l~~~~~~~~~~~~~~~~~~~~~ 192 (700)
.+..++||||+|.+.. .++.+++++...++.++ +.+||||+|++..+..-
T Consensus 10 ~~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~~-~~~v~lv~F~~~~~~~~---------------------- 66 (218)
T 3ibs_A 10 KGVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDELD-NDKVGMIVFAGDAFTQL---------------------- 66 (218)
T ss_dssp CCCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTCS-SCEEEEEEESSSEEEEE----------------------
T ss_pred CCCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhCC-CCeEEEEEECCCceEeC----------------------
Confidence 4567999999999863 78999999999999987 67999999998654311
Q ss_pred ccccccCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccCCCcccceE
Q 005362 193 LELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARV 272 (700)
Q Consensus 193 ~dl~~~~p~~~~l~~l~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ll~~~g~~~~~~gki 272 (700)
| +....+.+..+|+.|.... .+ .+++.++.||..|...+..... ....|
T Consensus 67 -------~-------~~~~~~~~~~~l~~l~~~~---~~-----------~g~T~l~~al~~a~~~l~~~~~---~~~~i 115 (218)
T 3ibs_A 67 -------P-------ITSDYISAKMFLESISPSL---IS-----------KQGTAIGEAINLATRSFTPQEG---VGRAI 115 (218)
T ss_dssp -------E-------EESCHHHHHHHHHTCCGGG---CC-----------SCSCCHHHHHHHHHTTSCSCSS---CCEEE
T ss_pred -------C-------CCCCHHHHHHHHHhcCccc---CC-----------CCCCcHHHHHHHHHHHHhhCCC---CCcEE
Confidence 0 0112344566777775421 00 1457899999999999876421 13689
Q ss_pred EEEecCCCCCCCCccccccccCcccCCCcchhhccCCCcchHHHHHHHHHHHcCcEEEEeeecCC---------------
Q 005362 273 FAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNE--------------- 337 (700)
Q Consensus 273 i~f~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~--------------- 337 (700)
+++++|.++.| . ..+.+..+.+.+|.|..+.++..
T Consensus 116 vllTDG~~~~~--~----------------------------~~~~~~~~~~~~i~v~~igig~~~~~~~~~~g~~~~~~ 165 (218)
T 3ibs_A 116 IVITDGENHEG--G----------------------------AVEAAKAAAEKGIQVSVLGVGMPEGAPIPVEGTNDYRR 165 (218)
T ss_dssp EEEECCTTCCS--C----------------------------HHHHHHHHHTTTEEEEEEEESCTTCEECBCTTSSCBCB
T ss_pred EEEcCCCCCCC--c----------------------------HHHHHHHHHhcCCEEEEEEecCCCCCcccccCCCceeE
Confidence 99999988765 0 13567788889999999988764
Q ss_pred ---------CcChhhhhhcccccceEEEEeCC
Q 005362 338 ---------YTDLASLKFLSIESGGSLFLYSS 360 (700)
Q Consensus 338 ---------~~dl~~l~~l~~~TGG~~~~y~~ 360 (700)
..|...|..+|+.|||..++..+
T Consensus 166 ~~~g~~~~~~~~~~~L~~iA~~~gG~~~~~~~ 197 (218)
T 3ibs_A 166 DREGNVIVTRLNEGMCQEIAKDGKGIYVRVDN 197 (218)
T ss_dssp CTTSCBCEECCCHHHHHHHHHHTEEEEEEECS
T ss_pred cCCCCEeEecCCHHHHHHHHHhcCCEEEECCC
Confidence 57788899999999999777764
No 11
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=98.55 E-value=3.6e-06 Score=82.12 Aligned_cols=163 Identities=10% Similarity=0.051 Sum_probs=107.8
Q ss_pred CcEEEEEEECCCCh--hHHHHHHHHHHHHHHhCC---CCcEEEEeeecceEEEEEccCCCCceeeeeeCCCCCccccccc
Q 005362 121 RPVYVAAVDLSSSE--EFLELTRSALQAALEAVP---SGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLEL 195 (700)
Q Consensus 121 ~p~~vFvID~s~~~--~~l~~~~~~l~~~l~~lp---~~~~vgiItf~~~V~~~~l~~~~~~~~~~~~~~~~~~~~~~dl 195 (700)
+.-.+||||.|.+. ..++.+++.+...++.++ ++.+||+|+|++..+..- ++
T Consensus 13 ~~divfvlD~SgSm~~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~~~~-----------------------~l 69 (202)
T 1ijb_A 13 LLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYI-----------------------GL 69 (202)
T ss_dssp CEEEEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEEE-----------------------CT
T ss_pred cccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCceEEE-----------------------ec
Confidence 45689999999985 468889999999999886 578999999998765310 01
Q ss_pred cccCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHH-hhccccCCCcccceEEE
Q 005362 196 EDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFN-YLGSEYGNTFALARVFA 274 (700)
Q Consensus 196 ~~~~p~~~~l~~l~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~-ll~~~g~~~~~~gkii~ 274 (700)
. .+ . .++.+.+.++.|+... ...+.+|.||..|.. ++.. +......-.|++
T Consensus 70 ~------~~----~-~~~~~~~~i~~l~~~g----------------g~~T~~~~aL~~a~~~~~~~-~~r~~~~~~iil 121 (202)
T 1ijb_A 70 K------DR----K-RPSELRRIASQVKYAG----------------SQVASTSEVLKYTLFQIFSK-IDRPEASRIALL 121 (202)
T ss_dssp T------CC----C-CHHHHHHHHHTCCCCC----------------BSCCCHHHHHHHHHHHTSSS-CSCTTSEEEEEE
T ss_pred C------CC----C-CHHHHHHHHHhCcCCC----------------CCcCcHHHHHHHHHHHHhcc-CCCCCCCeEEEE
Confidence 0 00 1 2344566677775431 013689999999974 4442 211111246888
Q ss_pred EecCCCCCCCCccccccccCcccCCCcchhhccCCCcchHHHHHHHHHHHcCcEEEEeeecCCCcChhhhhhcccc-cce
Q 005362 275 FLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIE-SGG 353 (700)
Q Consensus 275 f~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~dl~~l~~l~~~-TGG 353 (700)
+++|.++.|.. +-..+.+..+.+.||.|-.+.++. ..|..+|..++.. +||
T Consensus 122 lTDG~~~~~~~---------------------------~~~~~~a~~l~~~gi~i~~igvG~-~~~~~~L~~iA~~~~~~ 173 (202)
T 1ijb_A 122 LMASQEPQRMS---------------------------RNFVRYVQGLKKKKVIVIPVGIGP-HANLKQIRLIEKQAPEN 173 (202)
T ss_dssp EECCCCCGGGC---------------------------TTHHHHHHHHHHTTEEEEEEEEST-TSCHHHHHHHHHHCTTC
T ss_pred EccCCCCccch---------------------------HHHHHHHHHHHHCCCEEEEEecCC-cCCHHHHHHHhCCCCcc
Confidence 88987753200 011346677777888777666653 4688899999984 688
Q ss_pred EEEEeCCCC
Q 005362 354 SLFLYSSTD 362 (700)
Q Consensus 354 ~~~~y~~~~ 362 (700)
.+|+.++++
T Consensus 174 ~~~~~~~~~ 182 (202)
T 1ijb_A 174 KAFVLSSVD 182 (202)
T ss_dssp CCEEESSGG
T ss_pred cEEEeCCHH
Confidence 888888765
No 12
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.53 E-value=5.6e-07 Score=90.92 Aligned_cols=148 Identities=16% Similarity=0.100 Sum_probs=103.1
Q ss_pred EEEEEEECCCCh-------hHHHHHHHHHHHHHHh---CCCCcEEEEeeecce-EEEEEccCCCCceeeeeeCCCCCccc
Q 005362 123 VYVAAVDLSSSE-------EFLELTRSALQAALEA---VPSGALFGLATFSHK-IGLYDVQGAIPVVKNVFIPSDTEDTL 191 (700)
Q Consensus 123 ~~vFvID~s~~~-------~~l~~~~~~l~~~l~~---lp~~~~vgiItf~~~-V~~~~l~~~~~~~~~~~~~~~~~~~~ 191 (700)
..|||||+|.+. ..+++.+.++...++. ..+..+||||+|... ..+. .
T Consensus 5 AtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl-------------~-------- 63 (268)
T 4b4t_W 5 ATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVL-------------S-------- 63 (268)
T ss_dssp EEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEE-------------E--------
T ss_pred eEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceec-------------c--------
Confidence 468999999986 3688888888776653 456779999999642 2221 0
Q ss_pred cccccccCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccCCCcccce
Q 005362 192 SLELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALAR 271 (700)
Q Consensus 192 ~~dl~~~~p~~~~l~~l~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ll~~~g~~~~~~gk 271 (700)
++...+..|...|+.|+.. +.+.++.||+.|..+|+.... +...-|
T Consensus 64 ---------------plT~D~~~il~aL~~l~~~------------------G~T~l~~gL~~A~~aLk~~~~-k~~~~r 109 (268)
T 4b4t_W 64 ---------------TFTAEFGKILAGLHDTQIE------------------GKLHMATALQIAQLTLKHRQN-KVQHQR 109 (268)
T ss_dssp ---------------EEESCHHHHHHHHTTCCCC------------------SCCCHHHHHHHHHHHHHTCSC-TTSEEE
T ss_pred ---------------CCcchHHHHHHHhhhcCcC------------------CCCChHHHHHHHHHHHHhccc-CCCceE
Confidence 0111334566677777543 347899999999999975422 111258
Q ss_pred EEEEecCCCCCCCCccccccccCcccCCCcchhhccCCCcchHHHHHHHHHHHcCcEEEEeeecCCCcChhhhhhccccc
Q 005362 272 VFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIES 351 (700)
Q Consensus 272 ii~f~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~dl~~l~~l~~~T 351 (700)
|++|++|+-+. ..+-..++++++.+++|.||++.|+.+..+-..|..+++..
T Consensus 110 IIlf~ds~~~~----------------------------~~~~l~~lak~lkk~gI~v~vIgFG~~~~n~~kLe~l~~~~ 161 (268)
T 4b4t_W 110 IVAFVCSPISD----------------------------SRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAV 161 (268)
T ss_dssp EEEEECSCCSS----------------------------CHHHHHHHHHHHHHHTEEEEEEEESSCCSSCCHHHHHHHHH
T ss_pred EEEEECCCCCC----------------------------CHHHHHHHHHHHHHcCCEEEEEEeCCCccchHHHHHHHHHh
Confidence 99999985321 01223589999999999999999998766777788887766
Q ss_pred ce
Q 005362 352 GG 353 (700)
Q Consensus 352 GG 353 (700)
+|
T Consensus 162 Ng 163 (268)
T 4b4t_W 162 NN 163 (268)
T ss_dssp CS
T ss_pred cC
Confidence 55
No 13
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=98.43 E-value=9.1e-06 Score=78.98 Aligned_cols=163 Identities=14% Similarity=0.106 Sum_probs=108.1
Q ss_pred CcEEEEEEECCCChhHHHHHHHHHHHHHHhCC---CCcEEEEeeecceEEEEEccCCCCceeeeeeCCCCCccccccccc
Q 005362 121 RPVYVAAVDLSSSEEFLELTRSALQAALEAVP---SGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELED 197 (700)
Q Consensus 121 ~p~~vFvID~s~~~~~l~~~~~~l~~~l~~lp---~~~~vgiItf~~~V~~~~l~~~~~~~~~~~~~~~~~~~~~~dl~~ 197 (700)
+.-.+||||+|.+.+.++.+++.+...++.+. ++.+||+|+|++..+..- ++.+
T Consensus 6 ~~div~vlD~SgSm~~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~~~~-----------------------~l~~ 62 (200)
T 1v7p_C 6 LIDVVVVCDESNSIYPWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVF-----------------------NLNT 62 (200)
T ss_dssp CEEEEEEEECCTTCCCHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEEE-----------------------CTTT
T ss_pred cccEEEEEECCCCcccHHHHHHHHHHHHHhcCCCCCceEEEEEEECCCceEEE-----------------------eCCC
Confidence 45689999999987668889999999999885 689999999998765310 0100
Q ss_pred cCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHh-hccc-cCCCcccceEEEE
Q 005362 198 VMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNY-LGSE-YGNTFALARVFAF 275 (700)
Q Consensus 198 ~~p~~~~l~~l~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~l-l~~~-g~~~~~~gkii~f 275 (700)
+ . .+..+.+.|+.|+.... ..+.+|.||..|.+. +... |........|+++
T Consensus 63 ------~----~-~~~~~~~~i~~l~~~~G----------------~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivll 115 (200)
T 1v7p_C 63 ------Y----K-TKEEMIVATSQTSQYGG----------------DLTNTFGAIQYARKYAYSAASGGRRSATKVMVVV 115 (200)
T ss_dssp ------C----S-SHHHHHHHHHHCCCCCC----------------SCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEE
T ss_pred ------c----C-CHHHHHHHHHhhhccCC----------------CCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEE
Confidence 0 0 22344556666653210 147899999999985 5432 2111112468889
Q ss_pred ecCCCCCCCCccccccccCcccCCCcchhhccCCCcchHHHHHHHHHHHcCcEEEEeeecC----CCcC----hhhhhhc
Q 005362 276 LSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITN----EYTD----LASLKFL 347 (700)
Q Consensus 276 ~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~----~~~d----l~~l~~l 347 (700)
++|.++.+. -..+.+..+.+.||.|..+.+.. ..+| ..+|..+
T Consensus 116 TDG~~~~~~-----------------------------~~~~~~~~~~~~gi~i~~igvg~~~~~~~~~~~~~~~~L~~i 166 (200)
T 1v7p_C 116 TDGESHDGS-----------------------------MLKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNLIKEIKAI 166 (200)
T ss_dssp ESSCCSCGG-----------------------------GHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHH
T ss_pred ccCCCCCcc-----------------------------cHHHHHHHHHHCCCEEEEEEecccccccccchhhHHHHHHHH
Confidence 999875221 02356777888999888777732 3455 5779999
Q ss_pred ccccceE-EEEeCCCC
Q 005362 348 SIESGGS-LFLYSSTD 362 (700)
Q Consensus 348 ~~~TGG~-~~~y~~~~ 362 (700)
+..|||. +|..++++
T Consensus 167 A~~~~g~~~~~~~~~~ 182 (200)
T 1v7p_C 167 ASIPTERYFFNVSDEA 182 (200)
T ss_dssp SCSSHHHHEEEESSSG
T ss_pred hCCccHhcEEEcCCHH
Confidence 9999986 45556554
No 14
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=98.41 E-value=4e-06 Score=81.19 Aligned_cols=175 Identities=17% Similarity=0.187 Sum_probs=111.6
Q ss_pred CCcEEEEEEECCCCh--hHHHHHHHHHHHHHHhC-CCCcEEEEeeecceEEEE-EccCCCCceeeeeeCCCCCccccccc
Q 005362 120 ARPVYVAAVDLSSSE--EFLELTRSALQAALEAV-PSGALFGLATFSHKIGLY-DVQGAIPVVKNVFIPSDTEDTLSLEL 195 (700)
Q Consensus 120 ~~p~~vFvID~s~~~--~~l~~~~~~l~~~l~~l-p~~~~vgiItf~~~V~~~-~l~~~~~~~~~~~~~~~~~~~~~~dl 195 (700)
.+.-.+|+||+|.+. ..++.+++.++..++.+ +++.+||+|+|++.++.. .+ .+.
T Consensus 8 ~~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~~~~~~~~---------------------~~~ 66 (198)
T 1n3y_A 8 QEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTF---------------------EEF 66 (198)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEEEEECH---------------------HHH
T ss_pred CCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCccEEEec---------------------Ccc
Confidence 355789999999986 35677888899989888 789999999999975431 11 000
Q ss_pred cccCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHH-HhhccccC-CCcccceEE
Q 005362 196 EDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLF-NYLGSEYG-NTFALARVF 273 (700)
Q Consensus 196 ~~~~p~~~~l~~l~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~-~ll~~~g~-~~~~~gkii 273 (700)
. .+..+.+.|+.+... .+++.+|.||..|. .++....+ .......|+
T Consensus 67 ~--------------~~~~~~~~i~~l~~~-----------------~g~T~~~~al~~a~~~l~~~~~~~r~~~~~~ii 115 (198)
T 1n3y_A 67 R--------------RSSNPLSLLASVHQL-----------------QGFTYTATAIQNVVHRLFHASYGARRDAAKILI 115 (198)
T ss_dssp H--------------HCSSGGGGGTTCCCC-----------------CSCBCHHHHHHHHHTTTTSGGGTCCTTSEEEEE
T ss_pred C--------------CHHHHHHHHhcCcCC-----------------CCCchHHHHHHHHHHHHhCcccCCCCCCceEEE
Confidence 0 000111123333211 13578999999999 55553211 111235789
Q ss_pred EEecCCCCCCCCccccccccCcccCCCcchhhccCCCcchHHHHHHHHHHHcCcEEEEeeecCCC---cChhhhhhcccc
Q 005362 274 AFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEY---TDLASLKFLSIE 350 (700)
Q Consensus 274 ~f~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~---~dl~~l~~l~~~ 350 (700)
++++|.++.++-. +.+.+..+.+.||.|..+.++.+. .|...|..++..
T Consensus 116 llTDG~~~~~~~~----------------------------~~~~~~~~~~~gi~i~~igvG~~~~~~~~~~~L~~iA~~ 167 (198)
T 1n3y_A 116 VITDGKKEGDSLD----------------------------YKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASK 167 (198)
T ss_dssp EEESSCCBSCSSC----------------------------HHHHHHHHHHTTCEEEEEEESGGGGSSTTHHHHHHHSCS
T ss_pred EECCCCCCCCccc----------------------------HHHHHHHHHHCCCEEEEEEccccccccccHHHHHHHHcC
Confidence 9999988743210 235677778899998888776654 368899999999
Q ss_pred cceEE-EEeCCCCC-CchhHHHHHHh
Q 005362 351 SGGSL-FLYSSTDD-STLPQDIYRML 374 (700)
Q Consensus 351 TGG~~-~~y~~~~~-~~l~~dl~~~l 374 (700)
|||.. +..++++. ..+.++|.+.+
T Consensus 168 ~~g~~~~~~~~~~~l~~~~~~i~~~i 193 (198)
T 1n3y_A 168 PSQEHIFKVEDFDALKDIQNQLKEKI 193 (198)
T ss_dssp SSGGGEEEESSGGGGGGGHHHHHHHH
T ss_pred CCcccEEEeCCHHHHHHHHHHHHhhe
Confidence 99974 55565532 23444554443
No 15
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=98.37 E-value=7.8e-06 Score=80.95 Aligned_cols=162 Identities=13% Similarity=0.074 Sum_probs=107.4
Q ss_pred CcEEEEEEECCCChhHHHHHHHHHHHHHHhCC---CCcEEEEeeecceEEEEEccCCCCceeeeeeCCCCCccccccccc
Q 005362 121 RPVYVAAVDLSSSEEFLELTRSALQAALEAVP---SGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELED 197 (700)
Q Consensus 121 ~p~~vFvID~s~~~~~l~~~~~~l~~~l~~lp---~~~~vgiItf~~~V~~~~l~~~~~~~~~~~~~~~~~~~~~~dl~~ 197 (700)
+.-.+||||+|.+.+.++.+++.+...++.+. ++.+||+|+|++.++..- ++.+
T Consensus 22 ~~div~vlD~SgSM~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~~~-----------------------~l~~ 78 (223)
T 2b2x_A 22 QLDIVIVLDGSNSIYPWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEF-----------------------NLNK 78 (223)
T ss_dssp CEEEEEEEECSTTCCCHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEEEE-----------------------CTTT
T ss_pred cceEEEEEECCCChhhHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccEEE-----------------------ecCC
Confidence 45689999999998778889999999988774 689999999998765310 0100
Q ss_pred cCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHh-hccc-cCCCcccceEEEE
Q 005362 198 VMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNY-LGSE-YGNTFALARVFAF 275 (700)
Q Consensus 198 ~~p~~~~l~~l~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~l-l~~~-g~~~~~~gkii~f 275 (700)
+ . .+..+.+.|+.+.... ...+.+|.||..|... +... |........|+++
T Consensus 79 ------~----~-~~~~~~~~i~~l~~~g----------------G~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iill 131 (223)
T 2b2x_A 79 ------Y----S-STEEVLVAANKIVQRG----------------GRQTMTALGIDTARKEAFTEARGARRGVKKVMVIV 131 (223)
T ss_dssp ------C----C-SHHHHHHHHTTCCCCC----------------CSSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEE
T ss_pred ------C----C-CHHHHHHHHHhhhccC----------------CCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEE
Confidence 0 0 1222334455443220 0136899999999986 4421 1111112468889
Q ss_pred ecCCCCCCCCccccccccCcccCCCcchhhccCCCcchHHHHHHHHHHHcCcEEEEeeecCCCcC---------hhhhhh
Q 005362 276 LSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTD---------LASLKF 346 (700)
Q Consensus 276 ~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~d---------l~~l~~ 346 (700)
++|.++.|. -..+.+..+.+.||.|..+.++.+. | ...|..
T Consensus 132 TDG~~~~~~-----------------------------~~~~~~~~~~~~gi~v~~igvG~~~-~~~~~~~~~~~~~L~~ 181 (223)
T 2b2x_A 132 TDGESHDNY-----------------------------RLKQVIQDCEDENIQRFSIAILGHY-NRGNLSTEKFVEEIKS 181 (223)
T ss_dssp ESSCCTTGG-----------------------------GHHHHHHHHHTTTEEEEEEEECGGG-C---CCCHHHHHHHHT
T ss_pred cCCCCCCCc-----------------------------cHHHHHHHHHHCCCEEEEEEecCcc-ccccccchhHHHHHHH
Confidence 999876542 0235677777889988877775432 2 478999
Q ss_pred cccc-cceEEEEeCCCC
Q 005362 347 LSIE-SGGSLFLYSSTD 362 (700)
Q Consensus 347 l~~~-TGG~~~~y~~~~ 362 (700)
++.. |||.+|..++++
T Consensus 182 iA~~p~~g~~~~~~~~~ 198 (223)
T 2b2x_A 182 IASEPTEKHFFNVSDEL 198 (223)
T ss_dssp TSCSSGGGTEEEESSTT
T ss_pred HhCCCchhcEEEeCCHH
Confidence 9998 999998887664
No 16
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=98.35 E-value=3.5e-08 Score=95.24 Aligned_cols=165 Identities=18% Similarity=0.143 Sum_probs=99.2
Q ss_pred CCcEEEEEEECCCCh--hHHHHHHHHHHHHHHhC-CCCcEEEEeeecceEEEEEccCCCCceeeeeeCCCCCcccccccc
Q 005362 120 ARPVYVAAVDLSSSE--EFLELTRSALQAALEAV-PSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELE 196 (700)
Q Consensus 120 ~~p~~vFvID~s~~~--~~l~~~~~~l~~~l~~l-p~~~~vgiItf~~~V~~~~l~~~~~~~~~~~~~~~~~~~~~~dl~ 196 (700)
.+..++||||+|.+. ..++.+++++...++.+ +++.+||+|+|++... .+.+
T Consensus 4 ~~~~vv~vlD~SgSM~~~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~------------~~~~------------- 58 (189)
T 2x31_A 4 SDRVLIFAVDASGSAAVARLSEAKGAVELLLGRAYAARDHVSLITFRGTAA------------QVLL------------- 58 (189)
T ss_dssp SCCEEEEEEECCTTSCC--CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCC------------CBCT-------------
T ss_pred CCeEEEEEEECCCCCCchHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCc------------eEec-------------
Confidence 355789999999986 56788899999888877 8889999999986211 0010
Q ss_pred ccCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccCCCcccceEEEEe
Q 005362 197 DVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFL 276 (700)
Q Consensus 197 ~~~p~~~~l~~l~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ll~~~g~~~~~~gkii~f~ 276 (700)
|+ ...+..+.+.|+.++.. +++.++.||..|..++...... .....|++++
T Consensus 59 ---~~-------~~~~~~~~~~i~~l~~~------------------g~T~~~~al~~a~~~l~~~~~~-~~~~~ivliT 109 (189)
T 2x31_A 59 ---QP-------SRSLTQTKRQLQGLPGG------------------GGTPLASGMEMAMVTAKQARSR-GMTPTIALLT 109 (189)
T ss_dssp ---TT-------CSCHHHHHHHHHHCCCC------------------BCCCCHHHHHHHHHHHHTCTTT-CSSEEEEECC
T ss_pred ---CC-------CCCHHHHHHHHhcCCCC------------------CCCCHHHHHHHHHHHHHhccCC-CCceEEEEEC
Confidence 11 11233455666666532 3467999999999998753211 1125899999
Q ss_pred cCCCCCCCCccccccc-cCcccCCCcchhhccCCCcchHHHHHHHHHHHcCcEEEEeeecCCCcChhhhhhcccccceEE
Q 005362 277 SGPPDHGAGQLDTRRY-GEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSL 355 (700)
Q Consensus 277 ~g~pt~GpG~l~~~~~-~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~dl~~l~~l~~~TGG~~ 355 (700)
+|.++.|++.-...+. .... .+++..+.+.||.|..+.++.. +...|..++..|||..
T Consensus 110 DG~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~gi~v~~ig~g~~--~~~~L~~iA~~~~G~~ 168 (189)
T 2x31_A 110 DGRGNIALDGTANRELAGEQA-------------------TKVARAIRASGMPAVIIDTAMR--PNPALVDLARTMDAHY 168 (189)
T ss_dssp BSCCSSCCTHHHHHGGGTCCC-------------------EEEEECTGGGGSCCTHHHHHHS--SCSSSCSTTTEEEESS
T ss_pred CCCCCCCCCccccccchhHHH-------------------HHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHhcCCeE
Confidence 9999987641100000 0000 0011112234444333333333 6678999999999985
Q ss_pred EEeC
Q 005362 356 FLYS 359 (700)
Q Consensus 356 ~~y~ 359 (700)
++.+
T Consensus 169 ~~~~ 172 (189)
T 2x31_A 169 IALP 172 (189)
T ss_dssp TTTH
T ss_pred EECC
Confidence 5443
No 17
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.34 E-value=6.4e-06 Score=81.23 Aligned_cols=171 Identities=12% Similarity=0.153 Sum_probs=107.1
Q ss_pred CCcEEEEEEECCCCh--hHHHHHHHHHHHHHHhC---CCCcEEEEeeecceEEEEEccCCCCceeeeeeCCCCCcccccc
Q 005362 120 ARPVYVAAVDLSSSE--EFLELTRSALQAALEAV---PSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLE 194 (700)
Q Consensus 120 ~~p~~vFvID~s~~~--~~l~~~~~~l~~~l~~l---p~~~~vgiItf~~~V~~~~l~~~~~~~~~~~~~~~~~~~~~~d 194 (700)
.+.-++||||+|.+. ..++.+++++...++.+ +.+.+||+|+|++.++..- .
T Consensus 14 ~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~~~-----------------------~ 70 (223)
T 1q0p_A 14 GSMNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWV-----------------------K 70 (223)
T ss_dssp -CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEE-----------------------C
T ss_pred CceeEEEEEeCCCCCchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccceee-----------------------c
Confidence 456799999999986 46788888888776544 5678999999998765321 0
Q ss_pred ccccCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccCC-----Cccc
Q 005362 195 LEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGN-----TFAL 269 (700)
Q Consensus 195 l~~~~p~~~~l~~l~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ll~~~g~~-----~~~~ 269 (700)
+.+ +....++.+.+.|+.|+..... ..+++.+|.||..|...|....+. ....
T Consensus 71 ~~~---------~~~~~~~~~~~~i~~l~~~~~~-------------~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~ 128 (223)
T 1q0p_A 71 VSE---------ADSSNADWVTKQLNEINYEDHK-------------LKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTR 128 (223)
T ss_dssp TTS---------GGGGCHHHHHHHHHTCCTTSCS-------------CTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCE
T ss_pred ccc---------CCCCCHHHHHHHHHhccccccc-------------CCCCccHHHHHHHHHHHhhccccccccccccCC
Confidence 000 1122345566777777643100 014678999999999998753210 0112
Q ss_pred ceEEEEecCCCCCCCCccccccccCcccCCCcchhhccCCCcchHHHHHH---------HHHHHcCcEEEEeeecCCCcC
Q 005362 270 ARVFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLA---------AVAVQAGVCVDIFAITNEYTD 340 (700)
Q Consensus 270 gkii~f~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la---------~~~~~~~isvdlf~~~~~~~d 340 (700)
..|+++++|.++.|..... .-+.+. ..+.+.+|.|..+.++. .++
T Consensus 129 ~~iillTDG~~~~g~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~i~i~~igvG~-~~~ 182 (223)
T 1q0p_A 129 HVIILMTDGLHNMGGDPIT-------------------------VIDEIRDLLYIGKDRKNPREDYLDVYVFGVGP-LVN 182 (223)
T ss_dssp EEEEEEECSCCCSSSCTHH-------------------------HHHHHHHHTTCSCBTTBCCGGGEEEEEEECSS-CCC
T ss_pred eEEEEECCCCCCCCCChHH-------------------------HHHHHHHHHhhhhhhhhcccCCcEEEEEEecC-cCC
Confidence 4688999999887631000 001111 12234567666666543 478
Q ss_pred hhhhhhcccccce--EEEEeCCC
Q 005362 341 LASLKFLSIESGG--SLFLYSST 361 (700)
Q Consensus 341 l~~l~~l~~~TGG--~~~~y~~~ 361 (700)
...|..++..||| .++..+++
T Consensus 183 ~~~L~~iA~~~~G~~~~~~~~~~ 205 (223)
T 1q0p_A 183 QVNINALASKKDNEQHVFKVKDM 205 (223)
T ss_dssp HHHHHHHSCCCTTCCCEEETTC-
T ss_pred HHHHHHHhcCCCCCceEEEcCCH
Confidence 8999999999999 66665544
No 18
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=98.33 E-value=8e-06 Score=78.88 Aligned_cols=175 Identities=13% Similarity=0.177 Sum_probs=109.7
Q ss_pred CcEEEEEEECCCCh--hHHHHHHHHHHHHHHhC-CCCcEEEEeeecceEEEEEccCCCCceeeeeeCCCCCccccccccc
Q 005362 121 RPVYVAAVDLSSSE--EFLELTRSALQAALEAV-PSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELED 197 (700)
Q Consensus 121 ~p~~vFvID~s~~~--~~l~~~~~~l~~~l~~l-p~~~~vgiItf~~~V~~~~l~~~~~~~~~~~~~~~~~~~~~~dl~~ 197 (700)
+.-.+||||.|.+. ..++.+++.+...++.+ +++.+||+|+|++.++..- ++.+
T Consensus 5 ~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~~~~-----------------------~l~~ 61 (194)
T 1mf7_A 5 DSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHF-----------------------TFKE 61 (194)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEEEEE-----------------------CHHH
T ss_pred CeeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCceEEE-----------------------ecCC
Confidence 45689999999985 36778888888888877 4678999999999765310 0000
Q ss_pred cCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhh-ccc-cCCCcccceEEEE
Q 005362 198 VMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYL-GSE-YGNTFALARVFAF 275 (700)
Q Consensus 198 ~~p~~~~l~~l~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ll-~~~-g~~~~~~gkii~f 275 (700)
.. .+..+.+.++.|+.. .+++.+|.||..|...+ ... |........|+++
T Consensus 62 ----------~~-~~~~~~~~i~~l~~~-----------------~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iill 113 (194)
T 1mf7_A 62 ----------FQ-NNPNPRSLVKPITQL-----------------LGRTHTATGIRKVVRELFNITNGARKNAFKILVVI 113 (194)
T ss_dssp ----------HH-HSCCHHHHHTTCCCC-----------------CSCBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEE
T ss_pred ----------cC-CHHHHHHHHHhCcCC-----------------CCCchHHHHHHHHHHHhcCcccCCCCCCCeEEEEE
Confidence 00 112234455555421 13578999999999644 322 2111112468889
Q ss_pred ecCCCCCCCCccccccccCcccCCCcchhhccCCCcchHHHHHHHHHHHcCcEEEEeeecCCC---cChhhhhhccccc-
Q 005362 276 LSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEY---TDLASLKFLSIES- 351 (700)
Q Consensus 276 ~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~---~dl~~l~~l~~~T- 351 (700)
++|.++..+.. +.+.+..+.+.||.|..+.++.+. .+..+|..++..+
T Consensus 114 TDG~~~~d~~~----------------------------~~~~~~~~~~~gi~v~~igvG~~~~~~~~~~~L~~iA~~~~ 165 (194)
T 1mf7_A 114 TDGEKFGDPLG----------------------------YEDVIPEADREGVIRYVIGVGDAFRSEKSRQELNTIASKPP 165 (194)
T ss_dssp ESSCCBSCSSC----------------------------GGGTHHHHHHTTEEEEEEEESGGGCSHHHHHHHHHHSCSSH
T ss_pred cCCCCCCCchh----------------------------hHHHHHHHHHCCCEEEEEEecccccccccHHHHHHHhCCCC
Confidence 99988711100 012456667789888777776542 1378899999986
Q ss_pred ceEEEEeCCCCC-CchhHHHHHHh
Q 005362 352 GGSLFLYSSTDD-STLPQDIYRML 374 (700)
Q Consensus 352 GG~~~~y~~~~~-~~l~~dl~~~l 374 (700)
+|.+|..++++. ..+...|.+.+
T Consensus 166 ~~~~~~~~~~~~l~~~~~~i~~~i 189 (194)
T 1mf7_A 166 RDHVFQVNNFEALKTIQNQLREKI 189 (194)
T ss_dssp HHHEEEESSGGGGGGGHHHHHHHH
T ss_pred cccEEEeCCHHHHHHHHHHHHHHH
Confidence 588888877642 23445555444
No 19
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=98.32 E-value=6.1e-06 Score=84.90 Aligned_cols=166 Identities=17% Similarity=0.122 Sum_probs=109.3
Q ss_pred CCcEEEEEEECCCChh---HHHHHHHHHHHHHHhCCC---CcEEEEeeecceEEEE-EccCCCCceeeeeeCCCCCcccc
Q 005362 120 ARPVYVAAVDLSSSEE---FLELTRSALQAALEAVPS---GALFGLATFSHKIGLY-DVQGAIPVVKNVFIPSDTEDTLS 192 (700)
Q Consensus 120 ~~p~~vFvID~s~~~~---~l~~~~~~l~~~l~~lp~---~~~vgiItf~~~V~~~-~l~~~~~~~~~~~~~~~~~~~~~ 192 (700)
.+.-++||||.|.+.+ .++.+++++...++.++. +.+||||+|++.++.. .+....
T Consensus 20 ~~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~~~~l~~~~----------------- 82 (281)
T 4hqf_A 20 DEVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREIIRLHSDA----------------- 82 (281)
T ss_dssp SCEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEEEEEECSSC-----------------
T ss_pred CceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceEEEEccccC-----------------
Confidence 3456999999999862 347899999999998864 7899999999876432 221100
Q ss_pred ccccccCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccCCCcccceE
Q 005362 193 LELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARV 272 (700)
Q Consensus 193 ~dl~~~~p~~~~l~~l~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ll~~~g~~~~~~gki 272 (700)
...+..+.+.|+.|+... .. .+++.+|.||..|...+...++.......|
T Consensus 83 ----------------~~~~~~l~~~i~~l~~~~-~~-------------~G~T~~~~aL~~a~~~l~~~~~r~~~~~~i 132 (281)
T 4hqf_A 83 ----------------SKNKEKALIIIKSLLSTN-LP-------------YGKTSLTDALLQVRKHLNDRINRENANQLV 132 (281)
T ss_dssp ----------------SSCHHHHHHHHHHHHHTT-GG-------------GCSCCHHHHHHHHHHHHHTSCCCTTCEEEE
T ss_pred ----------------ccCHHHHHHHHHHHhhcc-CC-------------CCCccHHHHHHHHHHHHHhccCCCCCCEEE
Confidence 001234455566664311 00 145789999999988876543211123468
Q ss_pred EEEecCCCCCCCCccccccccCcccCCCcchhhccCCCcchHHHHHHHHHHHcCcEEEEeeecCCCcChhhhhhcccc--
Q 005362 273 FAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIE-- 350 (700)
Q Consensus 273 i~f~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~dl~~l~~l~~~-- 350 (700)
+++++|.++-+ .-..+.+..+.+.||.|-.+.++.+ .+-..|..++..
T Consensus 133 illTDG~~~d~-----------------------------~~~~~~~~~l~~~gv~i~~igiG~~-~~~~~L~~iA~~~~ 182 (281)
T 4hqf_A 133 VILTDGIPDSI-----------------------------QDSLKESRKLSDRGVKIAVFGIGQG-INVAFNRFLVGCHP 182 (281)
T ss_dssp EEEESSCCSCH-----------------------------HHHHHHHHHHHHTTCEEEEEEESSS-CCHHHHHHHTTSCS
T ss_pred EEEecCCCCCc-----------------------------HHHHHHHHHHHHCCCEEEEEeCCCc-cCHHHHHhhhCCCC
Confidence 88888876521 0123567777788988777766543 677888889876
Q ss_pred cce--EEEEeCCCC
Q 005362 351 SGG--SLFLYSSTD 362 (700)
Q Consensus 351 TGG--~~~~y~~~~ 362 (700)
+|| .+++..+|+
T Consensus 183 ~~g~~~~~~~~~~~ 196 (281)
T 4hqf_A 183 SDGKCNLYADSAWE 196 (281)
T ss_dssp SSSCCTTEEEECGG
T ss_pred CCCCCceEEecchh
Confidence 676 777777775
No 20
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=98.32 E-value=2.4e-05 Score=75.19 Aligned_cols=159 Identities=17% Similarity=0.137 Sum_probs=106.6
Q ss_pred CcEEEEEEECCCCh--hHHHHHHHHHHHHHHhCC---CCcEEEEeeecceEEEEEccCCCCceeeeeeCCCCCccccccc
Q 005362 121 RPVYVAAVDLSSSE--EFLELTRSALQAALEAVP---SGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLEL 195 (700)
Q Consensus 121 ~p~~vFvID~s~~~--~~l~~~~~~l~~~l~~lp---~~~~vgiItf~~~V~~~~l~~~~~~~~~~~~~~~~~~~~~~dl 195 (700)
+.-.+|+||.|.+. ..++.+++.+...++.++ ++.+||+|+|++.++..- ++
T Consensus 5 ~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~~~-----------------------~l 61 (189)
T 1atz_A 5 PLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDV-----------------------PW 61 (189)
T ss_dssp CEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEE-----------------------CT
T ss_pred ceeEEEEEeCCCCCChhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceEEE-----------------------ec
Confidence 45689999999986 568889999999999885 358999999998765310 00
Q ss_pred cccCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccc-cCCCcccce-EE
Q 005362 196 EDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSE-YGNTFALAR-VF 273 (700)
Q Consensus 196 ~~~~p~~~~l~~l~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ll~~~-g~~~~~~gk-ii 273 (700)
.+ ...++.+.+.++.|+.. .+++.+|.||..|.+.+... .|......+ ++
T Consensus 62 ~~-----------~~~~~~~~~~i~~l~~~-----------------~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~vi 113 (189)
T 1atz_A 62 NV-----------VPEKAHLLSLVDVMQRE-----------------GGPSQIGDALGFAVRYLTSEMHGARPGASKAVV 113 (189)
T ss_dssp TC-----------CCCHHHHHHHHHTCCCC-----------------CCCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEE
T ss_pred CC-----------CCCHHHHHHHHHhCcCC-----------------CCcchHHHHHHHHHHHHhccccCCCCCCCcEEE
Confidence 00 01234456667766532 13578999999999887542 111000125 67
Q ss_pred EEecCCCCCCCCccccccccCcccCCCcchhhccCCCcchHHHHHHHHHHHcCcEEEEeeecCCCcChhhhhhcccccce
Q 005362 274 AFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGG 353 (700)
Q Consensus 274 ~f~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~dl~~l~~l~~~TGG 353 (700)
++++|.++-. ..+.+..+.+.||.|..+.++. ..|..+|..++..++|
T Consensus 114 vltdg~~~~~-------------------------------~~~~~~~~~~~gi~v~~igvG~-~~~~~~L~~iA~~~~~ 161 (189)
T 1atz_A 114 ILVTDVSVDS-------------------------------VDAAADAARSNRVTVFPIGIGD-RYDAAQLRILAGPAGD 161 (189)
T ss_dssp EEECSCCSSC-------------------------------CHHHHHHHHHTTEEEEEEEESS-SSCHHHHHHHTGGGGG
T ss_pred EEeCCCCCch-------------------------------HHHHHHHHHHCCCEEEEEEcCC-cCCHHHHHHHHCCCcc
Confidence 7888754311 0356777778899888777654 4678899999999876
Q ss_pred -EEEEeCCCC
Q 005362 354 -SLFLYSSTD 362 (700)
Q Consensus 354 -~~~~y~~~~ 362 (700)
.++...+++
T Consensus 162 ~~~~~~~~~~ 171 (189)
T 1atz_A 162 SNVVKLQRIE 171 (189)
T ss_dssp GGCEEESSTT
T ss_pred cCEEEecChh
Confidence 566666664
No 21
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=98.30 E-value=4.1e-06 Score=80.97 Aligned_cols=145 Identities=17% Similarity=0.169 Sum_probs=94.1
Q ss_pred EEEEEEECCCCh-------hHHHHHHHHHHHHHHh---CCCCcEEEEeeecce-EEEEEccCCCCceeeeeeCCCCCccc
Q 005362 123 VYVAAVDLSSSE-------EFLELTRSALQAALEA---VPSGALFGLATFSHK-IGLYDVQGAIPVVKNVFIPSDTEDTL 191 (700)
Q Consensus 123 ~~vFvID~s~~~-------~~l~~~~~~l~~~l~~---lp~~~~vgiItf~~~-V~~~~l~~~~~~~~~~~~~~~~~~~~ 191 (700)
..+|+||+|.+. ..++..+.++...+.. ..+..+||||+|... -++ ..
T Consensus 4 ~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~-------------~~-------- 62 (192)
T 2x5n_A 4 ATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQV-------------LS-------- 62 (192)
T ss_dssp EEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCE-------------EE--------
T ss_pred EEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEE-------------ec--------
Confidence 578999999975 3577777776654432 234579999999763 221 10
Q ss_pred cccccccCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccCCCcccce
Q 005362 192 SLELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALAR 271 (700)
Q Consensus 192 ~~dl~~~~p~~~~l~~l~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ll~~~g~~~~~~gk 271 (700)
|+......+...|+.+... +++++|.||..|..+|+.... +....|
T Consensus 63 ---------------plT~d~~~i~~~L~~l~~~------------------g~t~l~~aL~~A~~~l~~~~~-~~~~~r 108 (192)
T 2x5n_A 63 ---------------TLTRDYGKFLSAMHDLPVR------------------GNAKFGDGIQIAQLALKHREN-KIQRQR 108 (192)
T ss_dssp ---------------EEESCHHHHHHHHTTCCCC------------------SCCCHHHHHHHHHHHHHTCSC-TTSEEE
T ss_pred ---------------CCCCCHHHHHHHHHcCCCC------------------CCchHHHHHHHHHHHHHhccc-cCCCce
Confidence 1112235566677665432 347899999999999986431 111358
Q ss_pred EEEEecCCCCCCCCccccccccCcccCCCcchhhccCCCcchHHHHHHHHHHHcCcEEEEeeecCCCcChhhhhhccccc
Q 005362 272 VFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIES 351 (700)
Q Consensus 272 ii~f~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~dl~~l~~l~~~T 351 (700)
|++|+++.-+.+ ..-..++++.+.+.||.|+++.++.+.-+-. |..+++.+
T Consensus 109 iiil~~~~~~~~----------------------------~~~~~~~a~~lk~~gi~v~~Ig~G~~~~~~~-l~~la~~~ 159 (192)
T 2x5n_A 109 IVAFVGSPIVED----------------------------EKNLIRLAKRMKKNNVAIDIIHIGELQNESA-LQHFIDAA 159 (192)
T ss_dssp EEEEECSCCSSC----------------------------HHHHHHHHHHHHHTTEEEEEEEESCC---CH-HHHHHHHH
T ss_pred EEEEEECCCCCC----------------------------chhHHHHHHHHHHCCCEEEEEEeCCCCccHH-HHHHHHhc
Confidence 888887632110 0113578999999999999999987765656 88888874
No 22
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=98.30 E-value=1e-05 Score=90.53 Aligned_cols=178 Identities=13% Similarity=0.103 Sum_probs=114.2
Q ss_pred CCcEEEEEEECCCCh--hHHHHHHHHHHHHHHhC---CCCcEEEEeeecceEEEEEccCCCCceeeeeeCCCCCcccccc
Q 005362 120 ARPVYVAAVDLSSSE--EFLELTRSALQAALEAV---PSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLE 194 (700)
Q Consensus 120 ~~p~~vFvID~s~~~--~~l~~~~~~l~~~l~~l---p~~~~vgiItf~~~V~~~~l~~~~~~~~~~~~~~~~~~~~~~d 194 (700)
.+.-.+||||+|.+. ..++.+++++...++.| +++.+||||+|++..+..- +
T Consensus 8 ~~~divfvlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~~~~-----------------------~ 64 (509)
T 2odp_A 8 GHLNLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKVLM-----------------------S 64 (509)
T ss_dssp SEEEEEEEEECSTTSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEEEEE-----------------------C
T ss_pred CCeeEEEEEeCCCccchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCceeE-----------------------e
Confidence 355689999999986 46788899999888877 7889999999998765411 0
Q ss_pred ccccCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccCC-C-------
Q 005362 195 LEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGN-T------- 266 (700)
Q Consensus 195 l~~~~p~~~~l~~l~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ll~~~g~~-~------- 266 (700)
+.. +....++.+.+.|+.|+... .++ ..++.++.||+.|.+++...+.. .
T Consensus 65 l~~---------~~~~~~~~~~~~l~~l~~~~---~~~----------~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~ 122 (509)
T 2odp_A 65 VLN---------DNSRDMTEVISSLENANYKD---HEN----------GTGTNTYAALNSVYLMMNNQMRLLGMETMAWQ 122 (509)
T ss_dssp TTS---------GGGGCHHHHHHHHHTCCGGG---GTT----------CCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHH
T ss_pred ccC---------CCCCCHHHHHHHHHhccccc---CCC----------CCCccHHHHHHHHHHHHhhccccccccccccc
Confidence 000 01113455666777775431 010 14578999999999998542210 0
Q ss_pred cccceEEEEecCCCCCCCCccccccccCcccCCCcchhhccCCCcchHHHHHHHHHH---------HcCcEEEEeeecCC
Q 005362 267 FALARVFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAV---------QAGVCVDIFAITNE 337 (700)
Q Consensus 267 ~~~gkii~f~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~---------~~~isvdlf~~~~~ 337 (700)
.....|+++++|.++.|.. . .+.+..+. +.++.|..+.++.+
T Consensus 123 ~~~~~iillTDG~~~~~~~-~----------------------------~~~~~~~~~~~~~~~~~~~~i~i~~iGvG~~ 173 (509)
T 2odp_A 123 EIRHAIILLTDGKSNMGGS-P----------------------------KTAVDHIREILNINQKRNDYLDIYAIGVGKL 173 (509)
T ss_dssp TEEEEEEEESCSCCCSSSC-T----------------------------HHHHHHHHHHTTCCSTTGGGEEEEEEEESSS
T ss_pred ccceEEEEECCCCccCCCC-h----------------------------hHHHHHHHHHhhccccccCceEEEEEEcCCC
Confidence 0013589999999887621 0 01222221 56777777777655
Q ss_pred CcChhhhhhcccccceE--EEEeCCCCCCchhHHHHHH
Q 005362 338 YTDLASLKFLSIESGGS--LFLYSSTDDSTLPQDIYRM 373 (700)
Q Consensus 338 ~~dl~~l~~l~~~TGG~--~~~y~~~~~~~l~~dl~~~ 373 (700)
..|..+|..++..+||. +++.+++ ..+.+-+.+.
T Consensus 174 ~~~~~~L~~iA~~~~G~~~~~~~~~~--~~l~~~~~~i 209 (509)
T 2odp_A 174 DVDWRELNELGSKKDGERHAFILQDT--KALHQVFEHM 209 (509)
T ss_dssp CCCHHHHHHHSCCCTTCCCEEEESSH--HHHHHHHHHH
T ss_pred cccHHHHHhhccCCCCceeeEEecCH--HHHHHHHHhh
Confidence 58999999999999998 5555443 3444444444
No 23
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=98.29 E-value=7.7e-06 Score=80.33 Aligned_cols=177 Identities=12% Similarity=0.059 Sum_probs=114.3
Q ss_pred CCcEEEEEEECCCChhHHHHHHHHHHHHHHhCC---CCcEEEEeeecceEEEEEccCCCCceeeeeeCCCCCcccccccc
Q 005362 120 ARPVYVAAVDLSSSEEFLELTRSALQAALEAVP---SGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELE 196 (700)
Q Consensus 120 ~~p~~vFvID~s~~~~~l~~~~~~l~~~l~~lp---~~~~vgiItf~~~V~~~~l~~~~~~~~~~~~~~~~~~~~~~dl~ 196 (700)
.+.-.+|+||+|.+.+.++.+++.+...++.+. ++.+||+|+|++.++..- ++.
T Consensus 6 ~~~div~vlD~SgSm~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~~~-----------------------~l~ 62 (213)
T 1pt6_A 6 TQLDIVIVLDGSNSIYPWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEF-----------------------NLN 62 (213)
T ss_dssp -CEEEEEEEECCTTCCCHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEEE-----------------------CTT
T ss_pred CCccEEEEEECCCChhhHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccEEE-----------------------ecc
Confidence 355789999999997778889999998888774 789999999998765310 010
Q ss_pred ccCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhh-ccc-cCCCcccceEEE
Q 005362 197 DVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYL-GSE-YGNTFALARVFA 274 (700)
Q Consensus 197 ~~~p~~~~l~~l~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ll-~~~-g~~~~~~gkii~ 274 (700)
+ + . .+..+.+.++.++... ...+.+|.||..|...+ ... |........|++
T Consensus 63 ~------~----~-~~~~~~~~i~~l~~~~----------------G~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iil 115 (213)
T 1pt6_A 63 K------Y----S-STEEVLVAAKKIVQRG----------------GRQTMTALGTDTARKEAFTEARGARRGVKKVMVI 115 (213)
T ss_dssp T------C----S-SHHHHHHHHHTCCCCC----------------CSSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEE
T ss_pred c------c----C-CHHHHHHHHHhccCCC----------------CCcccHHHHHHHHHHHhcCcccCCCCCCCeEEEE
Confidence 0 0 0 1223344555554321 01368999999999864 421 111111346888
Q ss_pred EecCCCCCCCCccccccccCcccCCCcchhhccCCCcchHHHHHHHHHHHcCcEEEEeeecCCC----cC----hhhhhh
Q 005362 275 FLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEY----TD----LASLKF 346 (700)
Q Consensus 275 f~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~----~d----l~~l~~ 346 (700)
+++|.++.|. -..+.+..+.+.||.|..+.++.+. ++ ..+|..
T Consensus 116 lTDG~~~~~~-----------------------------~~~~~~~~~~~~gi~i~~igig~~~~~~~~~~~~~~~~L~~ 166 (213)
T 1pt6_A 116 VTDGESHDNH-----------------------------RLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKS 166 (213)
T ss_dssp EESSCCSCSH-----------------------------HHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHH
T ss_pred EcCCCCCCCc-----------------------------cHHHHHHHHHHCCCEEEEEEeccccccccccchhhHHHHHH
Confidence 9999876431 1245677788889888777765321 11 368999
Q ss_pred cccc-cceEEEEeCCCCC-CchhHHHHHHhc
Q 005362 347 LSIE-SGGSLFLYSSTDD-STLPQDIYRMLS 375 (700)
Q Consensus 347 l~~~-TGG~~~~y~~~~~-~~l~~dl~~~l~ 375 (700)
++.. |||.+|..++++. ..+...|.+.+.
T Consensus 167 iA~~~~~g~~~~~~~~~~l~~i~~~l~~~i~ 197 (213)
T 1pt6_A 167 IASEPTEKHFFNVSDELALVTIVKTLGERIF 197 (213)
T ss_dssp HSCSSHHHHEEEESSGGGGGGGHHHHHHHHT
T ss_pred HhCCCchhcEEEeCCHHHHHHHHHHHHHhhe
Confidence 9998 8899888876642 345556655554
No 24
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=98.25 E-value=7.8e-06 Score=83.37 Aligned_cols=179 Identities=13% Similarity=0.066 Sum_probs=113.4
Q ss_pred CcEEEEEEECCCCh--hHH-HHHHHHHHHHHHhCC---CCcEEEEeeecceEEEEEccCCCCceeeeeeCCCCCcccccc
Q 005362 121 RPVYVAAVDLSSSE--EFL-ELTRSALQAALEAVP---SGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLE 194 (700)
Q Consensus 121 ~p~~vFvID~s~~~--~~l-~~~~~~l~~~l~~lp---~~~~vgiItf~~~V~~~~l~~~~~~~~~~~~~~~~~~~~~~d 194 (700)
+.-++|+||.|.+. ..+ +.+++++...++.+. ++.+||||+|++.+...- +
T Consensus 18 ~~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~~~~-----------------------~ 74 (266)
T 4hqo_A 18 QVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTELI-----------------------R 74 (266)
T ss_dssp CEEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEEEEE-----------------------C
T ss_pred ceeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcceEE-----------------------e
Confidence 44689999999986 344 578999999999886 689999999999754310 0
Q ss_pred ccccCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccCCCcccceEEE
Q 005362 195 LEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFA 274 (700)
Q Consensus 195 l~~~~p~~~~l~~l~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ll~~~g~~~~~~gkii~ 274 (700)
+. .. -...+..+.+.|+.|+.... ..+++.+|.||..|..++...++.......|++
T Consensus 75 l~------~~---~~~~~~~~~~~i~~l~~~~~--------------~~G~T~~~~AL~~a~~~l~~~~~r~~~~~~iIl 131 (266)
T 4hqo_A 75 LG------SG---QSIDKRQALSKVTELRKTYT--------------PYGTTSMTAALDEVQKHLNDRVNREKAIQLVIL 131 (266)
T ss_dssp TT------SH---HHHCHHHHHHHHHHHHHHCC--------------CCSCCCHHHHHHHHHHHHHTTCSCTTSEEEEEE
T ss_pred cC------CC---CccCHHHHHHHHHHhhhccC--------------CCCCCCHHHHHHHHHHHHhhccccCCCCeEEEE
Confidence 10 00 01124556666777641100 014578999999999998764322112347888
Q ss_pred EecCCCCCCCCccccccccCcccCCCcchhhccCCCcchHHHHHHHHHHHcCcEEEEeeecCCCcChhhhhhccccc--c
Q 005362 275 FLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIES--G 352 (700)
Q Consensus 275 f~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~dl~~l~~l~~~T--G 352 (700)
+++|.++- + .-..+.+..+.+.||.|-.+.++. ..+-..|..++... |
T Consensus 132 lTDG~~~d-~----------------------------~~~~~~a~~l~~~gi~i~~iGiG~-~~~~~~L~~iA~~~~~~ 181 (266)
T 4hqo_A 132 MTDGVPNS-K----------------------------YRALEVANKLKQRNVRLAVIGIGQ-GINHQFNRLIAGCRPRE 181 (266)
T ss_dssp EECSCCSC-H----------------------------HHHHHHHHHHHHTTCEEEEEECSS-SCCHHHHHHHHTCCTTC
T ss_pred EccCCCCC-c----------------------------hHHHHHHHHHHHCCCEEEEEecCc-ccCHHHHHHhhCCCCCC
Confidence 88887651 0 012457778888998777776654 46767778888764 4
Q ss_pred e--EEEEeCCCCCCchhHHHHHHhccCc
Q 005362 353 G--SLFLYSSTDDSTLPQDIYRMLSRPY 378 (700)
Q Consensus 353 G--~~~~y~~~~~~~l~~dl~~~l~~~~ 378 (700)
| .++++.+|+ .|. ++.+.+.+..
T Consensus 182 g~~~~~~~~d~~--~L~-~i~~~l~~~i 206 (266)
T 4hqo_A 182 PNCKFYSYADWN--EAV-ALIKPFIAKV 206 (266)
T ss_dssp SSCTTEECSCHH--HHH-HHHHHHHCCC
T ss_pred CCCCeEEecCHH--HHH-HHHHHHHhhh
Confidence 3 667666553 343 3444444443
No 25
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=98.22 E-value=5.8e-05 Score=71.73 Aligned_cols=154 Identities=15% Similarity=0.084 Sum_probs=98.5
Q ss_pred CCcEEEEEEECCCChh-HHHHHHHHHHHHHHh-CCCCcEEEEeeecceEEEEEccCCCCceeeeeeCCCCCccccccccc
Q 005362 120 ARPVYVAAVDLSSSEE-FLELTRSALQAALEA-VPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELED 197 (700)
Q Consensus 120 ~~p~~vFvID~s~~~~-~l~~~~~~l~~~l~~-lp~~~~vgiItf~~~V~~~~l~~~~~~~~~~~~~~~~~~~~~~dl~~ 197 (700)
.+.-.+|+||+|.+.+ .-...++.+++.+.. +.++.+||+|+|++..+..- ++
T Consensus 5 ~~~dvv~vlD~SgSM~~~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~-----------------------~~-- 59 (182)
T 1shu_X 5 RAFDLYFVLDKSGSVANNWIEIYNFVQQLAERFVSPEMRLSFIVFSSQATIIL-----------------------PL-- 59 (182)
T ss_dssp SCEEEEEEEECSGGGGGGHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEE-----------------------EE--
T ss_pred CceeEEEEEECCCCcccCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceEEE-----------------------CC--
Confidence 3557899999999862 111234445555544 44689999999998655321 00
Q ss_pred cCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccCCCcccceEEEEec
Q 005362 198 VMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLS 277 (700)
Q Consensus 198 ~~p~~~~l~~l~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ll~~~g~~~~~~gkii~f~~ 277 (700)
...+..+...++.|..... .+++.++.||..|...+....+ ......|+++++
T Consensus 60 -----------~~~~~~~~~~l~~l~~~~~---------------~g~T~~~~al~~a~~~l~~~~~-~~~~~~iiliTD 112 (182)
T 1shu_X 60 -----------TGDRGKISKGLEDLKRVSP---------------VGETYIHEGLKLANEQIQKAGG-LKTSSIIIALTD 112 (182)
T ss_dssp -----------ECCHHHHHHHHHHHHTCCC---------------CSCCCHHHHHHHHHHHHHHHTG-GGSCEEEEEEEC
T ss_pred -----------CCCHHHHHHHHHhcccCCC---------------CCCchHHHHHHHHHHHHHhccC-CCCCeEEEEECC
Confidence 0122345556666653211 1357899999999999865421 011358888999
Q ss_pred CCCCCCCCccccccccCcccCCCcchhhccCCCcchHHHHHHHHHHHcCcEEEEeeecCCCcChhhhhhcccccceE
Q 005362 278 GPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGS 354 (700)
Q Consensus 278 g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~dl~~l~~l~~~TGG~ 354 (700)
|.++.+. .....+.+..+.+.||.|..+.++ ..+...|..++..+||.
T Consensus 113 G~~~~~~---------------------------~~~~~~~~~~~~~~~i~i~~igvg--~~~~~~L~~ia~~~~~~ 160 (182)
T 1shu_X 113 GKLDGLV---------------------------PSYAEKEAKISRSLGASVYCVGVL--DFEQAQLERIADSKEQV 160 (182)
T ss_dssp CCCCTTH---------------------------HHHHHHHHHHHHHTTCEEEEEECS--SCCHHHHHHHSSSGGGE
T ss_pred CCcCCCC---------------------------chhHHHHHHHHHhCCCEEEEEeCC--cCCHHHHHHHhCCCCce
Confidence 8765210 112345677788889888777766 56888999999999885
No 26
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=98.18 E-value=2.4e-05 Score=87.18 Aligned_cols=178 Identities=10% Similarity=0.099 Sum_probs=105.9
Q ss_pred cEEEEEEECCCCh--hHHHHHHHHHHHHHHh---CCCCcEEEEeeecceEEEEEccCCCCceeeeeeCCCCCcccccccc
Q 005362 122 PVYVAAVDLSSSE--EFLELTRSALQAALEA---VPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELE 196 (700)
Q Consensus 122 p~~vFvID~s~~~--~~l~~~~~~l~~~l~~---lp~~~~vgiItf~~~V~~~~l~~~~~~~~~~~~~~~~~~~~~~dl~ 196 (700)
.-.+||||+|.+. ..++.+++++...++. .+++.+||||+|++..+..- ++.
T Consensus 2 ~div~vlD~SgSM~~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~-----------------------~~~ 58 (497)
T 1rrk_A 2 MNIYLVLDGSDSIGASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWV-----------------------KVS 58 (497)
T ss_dssp EEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEE-----------------------CTT
T ss_pred eeEEEEEECCCCcchhhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceEee-----------------------ccc
Confidence 3578999999986 5688888888887775 45689999999998665321 010
Q ss_pred ccCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccC--C---Ccccce
Q 005362 197 DVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYG--N---TFALAR 271 (700)
Q Consensus 197 ~~~p~~~~l~~l~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ll~~~g~--~---~~~~gk 271 (700)
+ +....++.+.+.|+.|+..... . .+++.+|.||..|...+..... . ......
T Consensus 59 ~---------~~~~~~~~~~~~l~~l~~~~~~--~-----------~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~ 116 (497)
T 1rrk_A 59 E---------ADSSNADWVTKQLNEINYEDHK--L-----------KSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHV 116 (497)
T ss_dssp S---------GGGGCHHHHHHHHHHCCGGGSC--C-----------TTCCCHHHHHHHHHHHHCCC------CGGGCEEE
T ss_pred c---------ccccCHHHHHHHHHhCcCcccc--c-----------cCccCHHHHHHHHHHHhhhhhccccccccccceE
Confidence 0 1122345667778887642100 0 1457899999999999842110 0 001257
Q ss_pred EEEEecCCCCCCCCccccccccCcccCCCcchhhccCCCcchHHHHHHHHHHHcCcEEEEeeecCCCcChhhhhhccccc
Q 005362 272 VFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIES 351 (700)
Q Consensus 272 ii~f~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~dl~~l~~l~~~T 351 (700)
|+++++|.++.|.......+ .. ++...+. +.+..+.+.+|.|..+.++ +.+|...|..++..+
T Consensus 117 iillTDG~~~~g~~~~~~~~---~~------~~~~~~~-------~~~~~~~~~~i~v~~igvG-~~~~~~~L~~iA~~~ 179 (497)
T 1rrk_A 117 IILMTDGLHNMGGDPITVID---EI------RDLLYIG-------KDRKNPREDYLDVYVFGVG-PLVNQVNINALASKK 179 (497)
T ss_dssp EEEEECSCCCSSSCTHHHHH---HH------HHHTTCS-------SCC-CCCGGGEEEEEEECS-SSCCHHHHHHHSCCC
T ss_pred EEEEeCCCcccCCChhHHHH---HH------HHHhhhh-------cccccchhcCeeEEEecCC-CccCHHHHHHHhcCC
Confidence 88999999988642111000 00 0000000 0001112337766666554 347889999999999
Q ss_pred ce--EEEEeCCC
Q 005362 352 GG--SLFLYSST 361 (700)
Q Consensus 352 GG--~~~~y~~~ 361 (700)
|| .++..+++
T Consensus 180 ~g~~~~~~~~~~ 191 (497)
T 1rrk_A 180 DNEQHVCKVKDM 191 (497)
T ss_dssp TTCCCEEETTCH
T ss_pred CCcceEEEeCCH
Confidence 99 66655533
No 27
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=98.18 E-value=6.1e-05 Score=71.74 Aligned_cols=165 Identities=10% Similarity=0.068 Sum_probs=103.3
Q ss_pred CcEEEEEEECCCCh--hHHHHHHHHHHHHHHhC-CCCcEEEEeeecceEEEEEccCCCCceeeeeeCCCCCccccccccc
Q 005362 121 RPVYVAAVDLSSSE--EFLELTRSALQAALEAV-PSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELED 197 (700)
Q Consensus 121 ~p~~vFvID~s~~~--~~l~~~~~~l~~~l~~l-p~~~~vgiItf~~~V~~~~l~~~~~~~~~~~~~~~~~~~~~~dl~~ 197 (700)
+.-.+|+||.|.+. ..++.+++.+...++.+ +++.+||+|+|++.++..- ++.+
T Consensus 2 ~~divfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~~~~-----------------------~l~~ 58 (179)
T 1mjn_A 2 NVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTEF-----------------------DFSD 58 (179)
T ss_dssp CEEEEEEEECBTTCCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEEEEE-----------------------CHHH
T ss_pred CccEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEECCceeEEE-----------------------cCcc
Confidence 34589999999985 45788899999999888 4568999999999765310 0100
Q ss_pred cCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHH-hhccc-cCCCcccceEEEE
Q 005362 198 VMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFN-YLGSE-YGNTFALARVFAF 275 (700)
Q Consensus 198 ~~p~~~~l~~l~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~-ll~~~-g~~~~~~gkii~f 275 (700)
.. .+..+..+++.|+... +++.+|.||..|.. ++... |......-.|+++
T Consensus 59 ----------~~-~~~~~~~~~~~i~~~~-----------------g~T~~~~aL~~a~~~~~~~~~g~r~~~~~~iill 110 (179)
T 1mjn_A 59 ----------YV-KRKDPDALLKHVKHML-----------------LLTNTFGAINYVATEVFREELGARPDATKVLIII 110 (179)
T ss_dssp ----------HH-HHCCHHHHHTTCCCCC-----------------BCCCHHHHHHHHHHHTSSGGGTCCTTSEEEEEEE
T ss_pred ----------cC-CHHHHHHHHHhcccCC-----------------CCChHHHHHHHHHHHhcccccCCCCCCCeEEEEE
Confidence 00 1223455666665431 24789999999985 55432 2111112368889
Q ss_pred ecCCCCCCCCccccccccCcccCCCcchhhccCCCcchHHHHHHHHHHHcCcEEEEeeecCCCc---Chhhhhhcccccc
Q 005362 276 LSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYT---DLASLKFLSIESG 352 (700)
Q Consensus 276 ~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~---dl~~l~~l~~~TG 352 (700)
++|.++.|.- . + ...||.|-.+..+.+.- +..+|..++..+|
T Consensus 111 TDG~~~~~~~-~----------------------~------------~~~~i~i~~igvG~~~~~~~~~~~L~~iA~~~~ 155 (179)
T 1mjn_A 111 TDGEATDSGN-I----------------------D------------AAKDIIRYIIGIGKHFQTKESQETLHKFASKPA 155 (179)
T ss_dssp ESSCCSSCSC-C----------------------G------------GGTTSEEEEEEESGGGCSHHHHHTTGGGSCSCH
T ss_pred cCCCCCCCcc-h----------------------H------------HHCCCEEEEEEccccccccccHHHHHHHhCCcc
Confidence 9998875421 0 0 12567666665554321 2478999999998
Q ss_pred e-EEEEeCCCCC-CchhHHHH
Q 005362 353 G-SLFLYSSTDD-STLPQDIY 371 (700)
Q Consensus 353 G-~~~~y~~~~~-~~l~~dl~ 371 (700)
| .+|+.++|+. ..+.++|.
T Consensus 156 ~~~~~~~~~~~~L~~i~~~i~ 176 (179)
T 1mjn_A 156 SEFVKILDTFEKLKDLCTELQ 176 (179)
T ss_dssp HHHEEEESSGGGSCCHHHHHH
T ss_pred HhcEEEeCCHHHHHHHHHHHH
Confidence 8 4677777642 23444554
No 28
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.07 E-value=4.4e-05 Score=72.79 Aligned_cols=159 Identities=13% Similarity=0.024 Sum_probs=102.1
Q ss_pred CcEEEEEEECCCCh-hHHHHHHHHHHHHHHhC-CCCcEEEEeeecceEEEEEccCCCCceeeeeeCCCCCcccccccccc
Q 005362 121 RPVYVAAVDLSSSE-EFLELTRSALQAALEAV-PSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELEDV 198 (700)
Q Consensus 121 ~p~~vFvID~s~~~-~~l~~~~~~l~~~l~~l-p~~~~vgiItf~~~V~~~~l~~~~~~~~~~~~~~~~~~~~~~dl~~~ 198 (700)
+.-.+|+||.|.+. +..+.+++.+++.++.+ .++.+||+|+|++..+..-
T Consensus 7 ~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~---------------------------- 58 (185)
T 3n2n_F 7 GFDLYFILDKSGSVLHHWNEIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLM---------------------------- 58 (185)
T ss_dssp EEEEEEEEECSGGGGGGHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEE----------------------------
T ss_pred CeeEEEEEeCCCChhhhHHHHHHHHHHHHHHhCCCCcEEEEEEEecCceEEe----------------------------
Confidence 34589999999986 33555666666666654 5688999999998665421
Q ss_pred CccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhcccc-CCCcccceEEEEec
Q 005362 199 MPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEY-GNTFALARVFAFLS 277 (700)
Q Consensus 199 ~p~~~~l~~l~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ll~~~g-~~~~~~gkii~f~~ 277 (700)
| +.+.++.+...++.|+...+ .+++.+|.||..|...+.... +.......|+++++
T Consensus 59 -~-------l~~~~~~~~~~i~~l~~~~~---------------~g~T~~~~al~~a~~~l~~~~~~~~~~~~~iillTD 115 (185)
T 3n2n_F 59 -K-------LTEDREQIRQGLEELQKVLP---------------GGDTYMHEGFERASEQIYYENRQGYRTASVIIALTD 115 (185)
T ss_dssp -E-------EECCHHHHHHHHHHHHTCCC---------------CSCCCHHHHHHHHHHHHHHHHTTCBCEEEEEEEEEC
T ss_pred -c-------cCCCHHHHHHHHHHHhhhcC---------------CCCccHHHHHHHHHHHHhhccccCCCCCcEEEEEcC
Confidence 0 01133455666777664311 145789999999998773211 10011247888888
Q ss_pred CCCCCCCCccccccccCcccCCCcchhhccCCCcchHHHHHHHHHHHcCcEEEEeeecCCCcChhhhhhcccccceEEEE
Q 005362 278 GPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFL 357 (700)
Q Consensus 278 g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~dl~~l~~l~~~TGG~~~~ 357 (700)
|.++.++. .--.+.+..+.+.||.|..+.++ ..+-.+|..++.. +|.+|+
T Consensus 116 G~~~~~~~---------------------------~~~~~~~~~~~~~gi~i~~igvg--~~~~~~L~~iA~~-~~~~~~ 165 (185)
T 3n2n_F 116 GELHEDLF---------------------------FYSEREANRSRDLGAIVYAVGVK--DFNETQLARIADS-KDHVFP 165 (185)
T ss_dssp CCCCHHHH---------------------------HHHHHHHHHHHHTTEEEEEEECS--SCCHHHHTTTSSS-GGGEEE
T ss_pred CCCCCCcc---------------------------cchHHHHHHHHHCCCEEEEEEec--cCCHHHHHHHhCC-CCCeEE
Confidence 87643210 01135777888889877777665 6788999999965 577777
Q ss_pred eCC
Q 005362 358 YSS 360 (700)
Q Consensus 358 y~~ 360 (700)
..+
T Consensus 166 ~~~ 168 (185)
T 3n2n_F 166 VND 168 (185)
T ss_dssp HHH
T ss_pred ecc
Confidence 654
No 29
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=97.93 E-value=1.1e-05 Score=94.77 Aligned_cols=178 Identities=11% Similarity=0.127 Sum_probs=105.5
Q ss_pred cEEEEEEECCCCh--hHHHHHHHHHHHHHHhCC---CCcEEEEeeecceEEEEEccCCCCceeeeeeCCCCCcccccccc
Q 005362 122 PVYVAAVDLSSSE--EFLELTRSALQAALEAVP---SGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELE 196 (700)
Q Consensus 122 p~~vFvID~s~~~--~~l~~~~~~l~~~l~~lp---~~~~vgiItf~~~V~~~~l~~~~~~~~~~~~~~~~~~~~~~dl~ 196 (700)
--++||||.|.+. ..++.+++++...++.++ .+.|||||+|++.....- ++.
T Consensus 244 ~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~~~~-----------------------~l~ 300 (741)
T 3hrz_D 244 MNIYLVLDGSGSIGASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWV-----------------------KVS 300 (741)
T ss_dssp EEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEE-----------------------CTT
T ss_pred eeEEEEeccCCcccccchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCceeE-----------------------eec
Confidence 3589999999986 457888888888877654 568999999998654311 000
Q ss_pred ccCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccc--cCCC---cccce
Q 005362 197 DVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSE--YGNT---FALAR 271 (700)
Q Consensus 197 ~~~p~~~~l~~l~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ll~~~--g~~~---~~~gk 271 (700)
.+ -...++.+.+.|+.|+.... .. ..++.+|.||..|...|... +... ...-.
T Consensus 301 ------~~---~~~~~~~~~~~i~~l~~~~~---~~----------~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~ 358 (741)
T 3hrz_D 301 ------EA---DSSNADWVTKQLNEINYEDH---KL----------KSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHV 358 (741)
T ss_dssp ------SG---GGGCHHHHHHHHTTCCGGGG---SS----------SCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEE
T ss_pred ------cc---CCcCHHHHHHHHHhcccccc---cC----------CCChHHHHHHHHHHHHHhhhhhccccchhccCeE
Confidence 00 01133456666776653100 00 14678999999999998311 1100 01125
Q ss_pred EEEEecCCCCCCCCccccccccCcccCCCcchhhccCCCcchHHHHHHHHHHHcCcEEEEeeecCCCcChhhhhhccccc
Q 005362 272 VFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIES 351 (700)
Q Consensus 272 ii~f~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~dl~~l~~l~~~T 351 (700)
||++++|.++.|.......+ .++ +.. ...+.++.+.+.||.|..+.++. .+|..+|..|+..+
T Consensus 359 iillTDG~~n~g~~p~~~~~---~i~------~~~-------~~~~~a~~~~~~gi~i~~igvG~-~~~~~~L~~ia~~~ 421 (741)
T 3hrz_D 359 IILMTDGLHNMGGDPITVID---EIR------DLL-------YIGKDRKNPREDYLDVYVFGVGP-LVNQVNINALASKK 421 (741)
T ss_dssp EEEEECSCCCSSSCTHHHHH---HHH------HHT-------TCSSCTTCCCGGGEEEEEEECSS-SCCHHHHHHHSCCC
T ss_pred EEEECCCccccCCCchHHHH---HHH------HHh-------hcccccccccccCeeEEEEeCCC-cCCHHHHHHHhcCC
Confidence 88999999998742211100 000 000 00012223445677666665543 48889999999999
Q ss_pred ceE--EEEeCCC
Q 005362 352 GGS--LFLYSST 361 (700)
Q Consensus 352 GG~--~~~y~~~ 361 (700)
||. +|+.+++
T Consensus 422 ~g~~~~~~~~~~ 433 (741)
T 3hrz_D 422 DNEQHVFKVKDM 433 (741)
T ss_dssp TTCCCEECBSSH
T ss_pred CCcceEEEeCCH
Confidence 996 5555544
No 30
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=97.93 E-value=0.0002 Score=69.42 Aligned_cols=153 Identities=11% Similarity=0.104 Sum_probs=94.8
Q ss_pred CcEEEEEEECCCCh--hHHHHHHHHHHHHHHhC---CCCcEEEEeeecceEEEEEccCCCCceeeeeeCCCCCccccccc
Q 005362 121 RPVYVAAVDLSSSE--EFLELTRSALQAALEAV---PSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLEL 195 (700)
Q Consensus 121 ~p~~vFvID~s~~~--~~l~~~~~~l~~~l~~l---p~~~~vgiItf~~~V~~~~l~~~~~~~~~~~~~~~~~~~~~~dl 195 (700)
+--.+|+||.|.+. ..++.++++++..++.+ +++.+||+|+|++.++..- ++
T Consensus 21 ~~DivfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~~~~-----------------------~l 77 (199)
T 3zqk_A 21 VLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVEY-----------------------PF 77 (199)
T ss_dssp CCEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEEEEE-----------------------CT
T ss_pred CcCEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccEEE-----------------------ec
Confidence 44689999999986 45788999999999988 5789999999999765421 01
Q ss_pred cccCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhh-ccccCC-CcccceEE
Q 005362 196 EDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYL-GSEYGN-TFALARVF 273 (700)
Q Consensus 196 ~~~~p~~~~l~~l~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ll-~~~g~~-~~~~gkii 273 (700)
.+ + . .++.+.+.++.++... ..++.+|.||..|...+ ....+. ....-.|+
T Consensus 78 ~~------~----~-~~~~~~~~i~~l~~~g----------------g~~T~~~~aL~~a~~~l~~~~~g~r~~~~~~ii 130 (199)
T 3zqk_A 78 SE------A----Q-SKGDILQRLREIRYQG----------------GNRTNTGLALRYLSDHSFLVSQGDREQAPNLVY 130 (199)
T ss_dssp TS------C----C-CHHHHHHHHHHCCCCC----------------CSCCCHHHHHHHCCCCCTCGGGTCCTTSCEEEE
T ss_pred CC------c----C-CHHHHHHHHHhCcCCC----------------CCcChHHHHHHHHHHHhhCcccCCCCCCCeEEE
Confidence 00 0 0 2344566677775431 01378999999998743 322111 11113577
Q ss_pred EEecCCCCCCCCccccccccCcccCCCcchhhccCCCcchHHHHHHHHHHHcCcEEEEeeecCCCcChhhhhhcccccce
Q 005362 274 AFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGG 353 (700)
Q Consensus 274 ~f~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~dl~~l~~l~~~TGG 353 (700)
++++|.++-. + .. . ..||.|-.+.++ ...|..+|..++. +|
T Consensus 131 llTDG~~~d~---v-----------------~~---~-------------~~~v~v~~iGiG-~~~~~~~L~~iA~--~~ 171 (199)
T 3zqk_A 131 MVTGNPASDE---I-----------------KR---L-------------PGDIQVVPIGVG-PNANVQELERIGW--PN 171 (199)
T ss_dssp EEECSCCSSC---C-----------------CC---C-------------CTTEEEEEEEES-TTCCHHHHHHHHT--TS
T ss_pred EEeCCCCchH---H-----------------HH---H-------------hCCCEEEEEEcC-CCCCHHHHHHHhC--CC
Confidence 7787753210 0 00 0 045544444443 3688999999997 55
Q ss_pred EEEEeCCCC
Q 005362 354 SLFLYSSTD 362 (700)
Q Consensus 354 ~~~~y~~~~ 362 (700)
..++.++|+
T Consensus 172 ~~~~~~~~~ 180 (199)
T 3zqk_A 172 APILIQDFE 180 (199)
T ss_dssp CCEEESCTT
T ss_pred ceEEeCCHH
Confidence 566777775
No 31
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=97.87 E-value=0.0003 Score=66.70 Aligned_cols=145 Identities=17% Similarity=0.123 Sum_probs=89.8
Q ss_pred CcEEEEEEECCCCh--hHHHHHHHHHHHHHHhCC---CCcEEEEeeecceEEEEEccCCCCceeeeeeCCCCCccccccc
Q 005362 121 RPVYVAAVDLSSSE--EFLELTRSALQAALEAVP---SGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLEL 195 (700)
Q Consensus 121 ~p~~vFvID~s~~~--~~l~~~~~~l~~~l~~lp---~~~~vgiItf~~~V~~~~l~~~~~~~~~~~~~~~~~~~~~~dl 195 (700)
+.-++|+||.|.+. ..++.+++.+...++.++ ++.+||+|+|++.++..- ++
T Consensus 17 ~~divfvlD~SgSm~~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~~~~-----------------------~l 73 (178)
T 2xgg_A 17 QLDICFLIDSSGSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHLQW-----------------------DL 73 (178)
T ss_dssp CEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEE-----------------------CT
T ss_pred CeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceEEEE-----------------------eC
Confidence 55799999999986 467889999999998885 458999999998765310 01
Q ss_pred cccCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccc--cCCCcccceEE
Q 005362 196 EDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSE--YGNTFALARVF 273 (700)
Q Consensus 196 ~~~~p~~~~l~~l~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ll~~~--g~~~~~~gkii 273 (700)
. .+ -...++.+.+.|+.++.. .+++.+|.||+.|...+... |........|+
T Consensus 74 ~------~~---~~~~~~~~~~~i~~l~~~-----------------~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~ii 127 (178)
T 2xgg_A 74 Q------SP---NAVDKQLAAHAVLDMPYK-----------------KGSTNTSDGLKACKQILFTGSRPGREHVPKLVI 127 (178)
T ss_dssp T------SG---GGSCHHHHHHHHHHCCCC-----------------CCCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEE
T ss_pred C------CC---CccCHHHHHHHHHhCCCC-----------------CCCccHHHHHHHHHHHhcCcccCCCCCCCEEEE
Confidence 0 00 001334556667777522 13578999999999876321 21111235788
Q ss_pred EEecCCCCCCCCccccccccCcccCCCcchhhccCCCcchHHHHHHHHHHHcCcEEEEeeecCCCcChhhh
Q 005362 274 AFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASL 344 (700)
Q Consensus 274 ~f~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~dl~~l 344 (700)
++++|.++.|. -..+.+..+.+.||.|..+.++. .+|-..|
T Consensus 128 llTDG~~~~~~-----------------------------~~~~~~~~l~~~gi~v~~igvG~-~~~~~~l 168 (178)
T 2xgg_A 128 GMTDGESDSDF-----------------------------RTVRAAKEIRELGGIVTVLAVGH-YVAAALV 168 (178)
T ss_dssp EEESSCCCHHH-----------------------------HHSHHHHHHHHTTCEEEEEECC---------
T ss_pred EEcCCCCCCCc-----------------------------cHHHHHHHHHHCCCEEEEEEcCC-cCCHHHH
Confidence 89998776430 12356777788898877776643 3444433
No 32
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=97.62 E-value=0.00017 Score=81.40 Aligned_cols=196 Identities=10% Similarity=0.146 Sum_probs=111.5
Q ss_pred cEEEEEEECCCCh--------hHHHHHHHHHHHHHHh---CCCCcEEEEeeecceEEEEEccCCCCceeeeeeCCCCCcc
Q 005362 122 PVYVAAVDLSSSE--------EFLELTRSALQAALEA---VPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDT 190 (700)
Q Consensus 122 p~~vFvID~s~~~--------~~l~~~~~~l~~~l~~---lp~~~~vgiItf~~~V~~~~l~~~~~~~~~~~~~~~~~~~ 190 (700)
-..+|+||+|.+. ..|+.+++++...++. ..++.+||||+|++.-.--.+.. | +++
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~------------d-~~y 74 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSG------------G-DQY 74 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCT------------T-TCS
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCcccc------------c-cCC
Confidence 3689999999875 3688888888888873 56778999999987532100100 0 000
Q ss_pred ccccccccCccCcCccchHh-HHHHHHHHHHh-cCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccc-cCCCc
Q 005362 191 LSLELEDVMPLSQFLAPVET-FKENITSALET-LRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSE-YGNTF 267 (700)
Q Consensus 191 ~~~dl~~~~p~~~~l~~l~~-~~~~i~~ll~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ll~~~-g~~~~ 267 (700)
+.. ..+.++.. ....+.. |+. |... ..+.++|.||.+|..++... ...+.
T Consensus 75 -----~~i----~vl~~l~~~~~~~l~~-l~~~l~~~-----------------~~~t~i~~al~~A~~~l~~~~~~~k~ 127 (565)
T 1jey_B 75 -----QNI----TVHRHLMLPDFDLLED-IESKIQPG-----------------SQQADFLDALIVSMDVIQHETIGKKF 127 (565)
T ss_dssp -----TTE----EEEEEEECCCHHHHHH-HHTTCCCC-----------------SSCCCHHHHHHHHHHHHHHHSSSSCC
T ss_pred -----Cce----EEeecCCCCCHHHHHH-HHhhccCC-----------------CccccHHHHHHHHHHHHHHHhhcccc
Confidence 000 00111110 1122222 332 3211 02468999999999999764 11111
Q ss_pred ccceEEEEecCCCCCCCCccccccccCcccCCCcchhhccCCCcchHHHHHHHHHHHcCcEEE-EeeecCCC----c---
Q 005362 268 ALARVFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVD-IFAITNEY----T--- 339 (700)
Q Consensus 268 ~~gkii~f~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~~isvd-lf~~~~~~----~--- 339 (700)
..-+|++||+|--+.|.. -..++|..+.+.||.|+ ++.++.+. +
T Consensus 128 ~~krIiLlTDg~~~~~~~----------------------------~~~~~a~~l~~~gI~i~~vig~g~~~~~~~~~~~ 179 (565)
T 1jey_B 128 EKRHIEIFTDLSSRFSKS----------------------------QLDIIIHSLKKCDISLQFFLPFSLGKEDGSGDRG 179 (565)
T ss_dssp SEEEEEEECCCCSCCCCT----------------------------THHHHHHHHHHTTEEEEEEESSCCC---------
T ss_pred cccEEEEEeCCCCCCCHH----------------------------HHHHHHHHHHhcCcEEEEEeccCCCcCCcccccc
Confidence 123899999886554321 12468999999999999 65444321 1
Q ss_pred ------------------------Chhhhhhcccccce-----EEEEeCCCCCCchhHHHHHHhccCcceeeEEEEe
Q 005362 340 ------------------------DLASLKFLSIESGG-----SLFLYSSTDDSTLPQDIYRMLSRPYAFNCIMRLR 387 (700)
Q Consensus 340 ------------------------dl~~l~~l~~~TGG-----~~~~y~~~~~~~l~~dl~~~l~~~~~~~a~~rvR 387 (700)
+...|..+++.||| .++...+.-. ...-+.+...++..|.+.+++-
T Consensus 180 ~~~~~~~~~~~~f~~~~~~~~~~~~e~~L~~ia~~~~G~~~~s~~~~~~~~~~--~l~~~k~~~~r~~~~~g~l~lg 254 (565)
T 1jey_B 180 DGPFRLGGHGPSFPLKGITEQQKEGLEIVKMVMISLEGEDGLDEIYSFSESLR--KLCVFKKIERHSIHWPCRLTIG 254 (565)
T ss_dssp -CCCCTTCSSCCCCTTTSCHHHHHHHHHHHHHHHHHHCGGGGGGEEEHHHHTT--SSTTTGGGCCCCCCEEEEEEET
T ss_pred cccccccccccccchhccccchhhhHHHHHHHHHhcCCCcccceeecHHHHHH--HhccCcceeecccccccceEEC
Confidence 12237788888988 6555432110 0111233334555788888775
No 33
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=97.55 E-value=0.00016 Score=87.57 Aligned_cols=161 Identities=17% Similarity=0.122 Sum_probs=102.7
Q ss_pred cEEEEEEECCCCh--hHHHHHHHHHHHHHHhCCCC-cEEEEeeecceEEEE-EccCCCCceeeeeeCCCCCccccccccc
Q 005362 122 PVYVAAVDLSSSE--EFLELTRSALQAALEAVPSG-ALFGLATFSHKIGLY-DVQGAIPVVKNVFIPSDTEDTLSLELED 197 (700)
Q Consensus 122 p~~vFvID~s~~~--~~l~~~~~~l~~~l~~lp~~-~~vgiItf~~~V~~~-~l~~~~~~~~~~~~~~~~~~~~~~dl~~ 197 (700)
--.+||||.|.+. ..++.+++++++.++.+.++ .|||||+|++.++.. .+.. ..+.
T Consensus 131 ~DIvfvlD~SgSm~~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~~~~~~~lt~------------------~~~~-- 190 (1095)
T 3k6s_A 131 QDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEE------------------FRRS-- 190 (1095)
T ss_dssp EEEEEEEECCTTSCSHHHHHHHHHHHHHHHSSCSSSEEEEEEEESSSEEEEECSHH------------------HHSC--
T ss_pred ccEEEEEcCCCCCChhHHHHHHHHHHHHHHhccccccEEEEEEECCeEEEEecCcc------------------cCCH--
Confidence 3589999999985 45788999999999988754 899999999876532 1100 0000
Q ss_pred cCccCcCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhh-ccc-cCCCcccceEEEE
Q 005362 198 VMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYL-GSE-YGNTFALARVFAF 275 (700)
Q Consensus 198 ~~p~~~~l~~l~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ll-~~~-g~~~~~~gkii~f 275 (700)
+.+..+++.|+.. .+++.+|.||..|...+ ... |......-.|+++
T Consensus 191 ---------------~~l~~ai~~i~~~-----------------gG~T~~g~AL~~a~~~lf~~~~g~R~~~~kviIll 238 (1095)
T 3k6s_A 191 ---------------SNPLSLLASVHQL-----------------QGFTYTATAIQNVVHRLFHASYGARRDAAKILIVI 238 (1095)
T ss_dssp ---------------SCGGGGTTTCCCC-----------------CSCBCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEE
T ss_pred ---------------HHHHHHHhhhhcc-----------------cCCChHHHHHHHHHHhhccccccCCCCCCeEEEEE
Confidence 0111223334322 13578999999998754 322 2111112357888
Q ss_pred ecCCCCCCCCccccccccCcccCCCcchhhccCCCcchHHHHHHHHHHHcCcEEEEeeecCC---CcChhhhhhcccccc
Q 005362 276 LSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNE---YTDLASLKFLSIESG 352 (700)
Q Consensus 276 ~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~---~~dl~~l~~l~~~TG 352 (700)
++|.++..+. -+.+.+.++.+.||.|-.+..... .++..+|..++..++
T Consensus 239 TDG~~~~d~~----------------------------~~~~~a~~~r~~GI~i~aIGVG~~~~~~~d~~eL~~IAs~p~ 290 (1095)
T 3k6s_A 239 TDGKKEGDSL----------------------------DYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPS 290 (1095)
T ss_dssp ESSCCBSCSS----------------------------CHHHHHHHHHHHCEEECCEEBSSGGGSTTSSHHHHTTSCSST
T ss_pred eCCCcCCCch----------------------------hHHHHHHHHHHCCCEEEEEecccccccccCHHHHHHHHcCCC
Confidence 8887642211 124577778888887666666554 268999999999988
Q ss_pred e-EEEEeCCCC
Q 005362 353 G-SLFLYSSTD 362 (700)
Q Consensus 353 G-~~~~y~~~~ 362 (700)
| .++..++++
T Consensus 291 g~~vf~v~d~~ 301 (1095)
T 3k6s_A 291 QEHIFKVEDFD 301 (1095)
T ss_dssp TTSCCCBSCSG
T ss_pred CceEEEcCCHH
Confidence 7 666566664
No 34
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=97.23 E-value=0.0008 Score=57.83 Aligned_cols=88 Identities=14% Similarity=0.096 Sum_probs=57.6
Q ss_pred ccceEeeccCCCCCCCCCccchhhhccCCCcEEEEecCceEEEEEecCCCCCCCCCCCccHHHHHHHHHHH-HhcCCCCe
Q 005362 571 YPLLTSYSTPDKQAFPRHSLSRAALITSGSPIFLLDAFTTIIVFYSSTADPTLPFPPPQDCLLRTTINKMK-QERSITPK 649 (700)
Q Consensus 571 yP~L~~~~~~~~~~~p~~~L~~~~~~~~~~~i~LlD~~~~i~i~~g~~~~~~~~~~~~~~~~~~~~i~~l~-~~R~~~p~ 649 (700)
.|+||.+........-...++.++ ++++.+||||++..+|+|+|+.++. .+-.....+.+.|+ .+|.....
T Consensus 2 ~~rL~~v~g~~~~~~~eV~~~~~s--Lns~d~FILd~g~~iyvW~G~~s~~------~Ek~~A~~~a~~i~~~er~~~~~ 73 (104)
T 1kcq_A 2 VQRLFQVKGRRVVRATEVPVSWES--FNNGDCFILDLGNNIHQWCGSNSNR------YERLKATQVSKGIRDNERSGRAR 73 (104)
T ss_dssp CCEEEEEEESSSEEEEEECSSGGG--CCTTSEEEEECSSEEEEEECTTCCH------HHHHHHHHHHHHHHHHTSTTCSE
T ss_pred CcEEEEEECCCcEEEEEecCCHHH--cCCCCeEEEeCCCEEEEEeCCCCCH------HHHHHHHHHHHHHHhhccCCCCc
Confidence 378998876321111111233334 5899999999999999999997653 12234456666675 36766778
Q ss_pred EEEEeCCCCcHHHHHhhc
Q 005362 650 LIFIRGGQDDATIFENYL 667 (700)
Q Consensus 650 ~~vv~~g~~~~~~f~~~L 667 (700)
+.++.+|...+ .|...|
T Consensus 74 i~~v~eG~E~~-~Fw~~L 90 (104)
T 1kcq_A 74 VHVSEEGTEPE-AMLQVL 90 (104)
T ss_dssp EEEEETTCCCH-HHHHHH
T ss_pred EEEEeCCCCCH-HHHHHc
Confidence 99999998554 454555
No 35
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A
Probab=96.70 E-value=0.0017 Score=56.77 Aligned_cols=89 Identities=22% Similarity=0.224 Sum_probs=57.8
Q ss_pred ccceEeeccCCCCCCCCCccchhhhccCCCcEEEEecCceEEEEEecCCCCCCCCCCCccHHHHHHHHHHHHhcCCCCeE
Q 005362 571 YPLLTSYSTPDKQAFPRHSLSRAALITSGSPIFLLDAFTTIIVFYSSTADPTLPFPPPQDCLLRTTINKMKQERSITPKL 650 (700)
Q Consensus 571 yP~L~~~~~~~~~~~p~~~L~~~~~~~~~~~i~LlD~~~~i~i~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~R~~~p~~ 650 (700)
-|+||.+........-...++.++ ++++.+||||++..+|+|+|+.++. .+-.+.+.+...|...|.-...+
T Consensus 12 ~~rL~~v~G~~~~~~~eV~~~~ss--Lns~D~FILd~g~~iyvW~G~~ss~------~Ek~~A~~~a~~i~~er~g~~~i 83 (114)
T 1svq_A 12 KPRLLHISGDKNAKVAEVPLATSS--LNSGDCFLLDAGLTIYQFNGSKSSP------QEKNKAAEVARAIDAERKGLPKV 83 (114)
T ss_dssp CEEEEEEECTTSCEEEEECCCSSS--CCTTSEEEEEETTEEEECCCTTCCH------HHHHHHHHHHHHHHHHHTTCSEE
T ss_pred CcEEEEEECCCcEEEEEecCCHHH--cCCCCeEEEecCCEEEEEeCCCCCH------HHHHHHHHHHHHhhhccCCCccE
Confidence 589999874321111111233334 5899999999999999999997653 22234456667776677666789
Q ss_pred EEEeCCCC-cHHHHHhhc
Q 005362 651 IFIRGGQD-DATIFENYL 667 (700)
Q Consensus 651 ~vv~~g~~-~~~~f~~~L 667 (700)
.++.+|.. ....|...|
T Consensus 84 ~vv~eg~~~E~~~Fw~~L 101 (114)
T 1svq_A 84 EVFCETDSDIPAEFWKLL 101 (114)
T ss_dssp EECCCCTTCCCHHHHHHH
T ss_pred EEEeCCCcCCcHHHHHHc
Confidence 99999873 223454544
No 36
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=95.74 E-value=0.039 Score=54.28 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=38.2
Q ss_pred CcEEEEEEECCCCh-hHHHHHHHHHHHHHHhCC---CCcEEEEeeecce
Q 005362 121 RPVYVAAVDLSSSE-EFLELTRSALQAALEAVP---SGALFGLATFSHK 165 (700)
Q Consensus 121 ~p~~vFvID~s~~~-~~l~~~~~~l~~~l~~lp---~~~~vgiItf~~~ 165 (700)
+.-+||+||+|.+. +.++.++.++.+.+..++ ++.+||+|+|+..
T Consensus 134 ~~~vvfLVDtSgSM~~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~ 182 (242)
T 3rag_A 134 ALHLVVCLDTSASMRDKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGK 182 (242)
T ss_dssp CEEEEEEEECSGGGTTTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCS
T ss_pred CCCEEEEEECcccHHHHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCC
Confidence 45689999999985 678999999999888765 5689999999974
No 37
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A
Probab=95.56 E-value=0.02 Score=61.26 Aligned_cols=104 Identities=13% Similarity=0.255 Sum_probs=55.3
Q ss_pred hccceEeeccCCCCC-CC-CCccchhhhccCCCcEEEEecCceEEEEEecCCCCCCCCCCCccHHHHHHHHHHHH---hc
Q 005362 570 VYPLLTSYSTPDKQA-FP-RHSLSRAALITSGSPIFLLDAFTTIIVFYSSTADPTLPFPPPQDCLLRTTINKMKQ---ER 644 (700)
Q Consensus 570 iyP~L~~~~~~~~~~-~p-~~~L~~~~~~~~~~~i~LlD~~~~i~i~~g~~~~~~~~~~~~~~~~~~~~i~~l~~---~R 644 (700)
..|+||.+++..+.- +. ..+++.+. +.++.+||||+|..||||+|+.+.+. +....+....+-++. .|
T Consensus 281 ~~~rLf~~s~~~G~~~v~EV~~f~Q~d--L~~~dv~ILD~g~~IfVW~G~~as~~-----Er~~Al~~A~~yi~~~~~~r 353 (398)
T 3fg7_A 281 ITPRLFECSNKTGRFLATEIPDFNQDD--LEEDDVFLLDVWDQVFFWIGKHANEE-----EKKAAATTAQEYLKTHPSGR 353 (398)
T ss_dssp CCCEEEEEECTTSSCEEEECTTCCGGG--CCTTSEEEEECSSCEEEEECTTCCHH-----HHHHHHHHHHHHHHHSSSSC
T ss_pred ccCeeEEEEcCCCCEEEEEecccCHHH--CCCCCEEEEeCCCEEEEEECCCCCHH-----HHHHHHHHHHHHHHhCcccC
Confidence 589999988753320 00 01233333 57899999999999999999986631 111223333333443 35
Q ss_pred CCCCeEEEEeCCCCcHHHHHhhccC---CCCCCCCCCCCCCcHHHH
Q 005362 645 SITPKLIFIRGGQDDATIFENYLIE---EQDVDGSGLTSVMGFVSF 687 (700)
Q Consensus 645 ~~~p~~~vv~~g~~~~~~f~~~LvE---D~~~~~~~~~~~~sy~~f 687 (700)
.+.-++.+|.+|.. -..|+++.-. ++.. +.+||.+.
T Consensus 354 ~~~tpi~~V~eG~E-p~~Fk~~F~~Wd~~~~~------~~~~~~~~ 392 (398)
T 3fg7_A 354 DPETPIIVVKQGHE-PPTFTGWFLAWDPFKWS------GIHVVPNL 392 (398)
T ss_dssp CTTCCEEEEETTCC-CHHHHTTSSCCCTTCC---------------
T ss_pred CCCCCEEEEcCCCC-CHHHHHhhhcCChhhhc------ccCCHHHh
Confidence 55556778888862 2345555532 2222 24788764
No 38
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A
Probab=95.39 E-value=0.019 Score=60.39 Aligned_cols=90 Identities=14% Similarity=0.275 Sum_probs=51.3
Q ss_pred hccceEeeccCCCC----CCCCCccchhhhccCCCcEEEEecCceEEEEEecCCCCCCCCCCCccHHHHHHHHHHHH---
Q 005362 570 VYPLLTSYSTPDKQ----AFPRHSLSRAALITSGSPIFLLDAFTTIIVFYSSTADPTLPFPPPQDCLLRTTINKMKQ--- 642 (700)
Q Consensus 570 iyP~L~~~~~~~~~----~~p~~~L~~~~~~~~~~~i~LlD~~~~i~i~~g~~~~~~~~~~~~~~~~~~~~i~~l~~--- 642 (700)
..|+||.+++..+. .++ -+++.+. +.++.+||||+|..||||+|+.++..- ....+....+-++.
T Consensus 227 ~~~rLf~~s~~~G~~~v~ev~-~~f~q~d--L~~~dv~iLD~g~~IfVW~G~~as~~e-----r~~A~~~A~~y~~~~~~ 298 (344)
T 2fh1_A 227 HPPRLFACSNKIGRFVIEEVP-GELMQED--LATDDVMLLDTWDQVFVWVGKDSQEEE-----KTEALTSAKRYIETDPA 298 (344)
T ss_dssp CCCEEEEEECTTSSCEEEEEC-SSCCGGG--SCTTSEEEEECSSCEEEEECTTCCHHH-----HHHHHHHHHHHHHTC--
T ss_pred cCCEEEEEEcCCCCEEEEEcc-CCcCHhH--CCCCCEEEEeCCCEEEEEECCCCCHHH-----HHHHHHHHHHHHHhCcc
Confidence 67999998764332 111 1233333 578899999999999999999866411 11122222223332
Q ss_pred hcCCCCeEEEEeCCCCcHHHHHhhcc
Q 005362 643 ERSITPKLIFIRGGQDDATIFENYLI 668 (700)
Q Consensus 643 ~R~~~p~~~vv~~g~~~~~~f~~~Lv 668 (700)
.|....++.+|.+|.. -..|++++-
T Consensus 299 ~r~~~t~i~~V~eG~E-p~~Fk~~F~ 323 (344)
T 2fh1_A 299 NRDRRTPITVVKQGFE-PPSFVGWFL 323 (344)
T ss_dssp -----CCEEEEETTCC-CHHHHTTSS
T ss_pred CCCCCCcEEEEcCCCC-CHHHHHHHh
Confidence 4666667888889852 234555543
No 39
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=94.82 E-value=0.072 Score=62.79 Aligned_cols=48 Identities=21% Similarity=0.142 Sum_probs=37.7
Q ss_pred CCcEEEEEEECCCCh---h-----HHHHHHHHHHHHHHhCC--CCcEEEEeeecceEE
Q 005362 120 ARPVYVAAVDLSSSE---E-----FLELTRSALQAALEAVP--SGALFGLATFSHKIG 167 (700)
Q Consensus 120 ~~p~~vFvID~s~~~---~-----~l~~~~~~l~~~l~~lp--~~~~vgiItf~~~V~ 167 (700)
.+--.|||||+|.++ . .++.++++++..++.|. ++.|||||+|++.+.
T Consensus 223 ~~~DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L~~~~~drVgLV~Fs~~a~ 280 (893)
T 2ww8_A 223 VPLDVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKITSDSENRVALVTYASTIF 280 (893)
T ss_dssp CCEEEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSSBC
T ss_pred CCccEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCccc
Confidence 345689999999986 1 46778888888887663 478999999998654
No 40
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens}
Probab=94.74 E-value=0.018 Score=61.14 Aligned_cols=89 Identities=17% Similarity=0.338 Sum_probs=48.1
Q ss_pred hccceEeeccCCCC----CCCCCccchhhhccCCCcEEEEecCceEEEEEecCCCCCCCCCCCccHHHH---HHHHHHHH
Q 005362 570 VYPLLTSYSTPDKQ----AFPRHSLSRAALITSGSPIFLLDAFTTIIVFYSSTADPTLPFPPPQDCLLR---TTINKMKQ 642 (700)
Q Consensus 570 iyP~L~~~~~~~~~----~~p~~~L~~~~~~~~~~~i~LlD~~~~i~i~~g~~~~~~~~~~~~~~~~~~---~~i~~l~~ 642 (700)
.-|+||.+++..+. .++ .+++.+. +.++.+||||++..||||+|+.+...- ....++ ++++....
T Consensus 268 ~~~rLf~~s~~~G~~~v~ev~-~~f~Q~d--L~~~dv~ILD~~~~IfVW~G~~as~~E-----r~~A~~~A~~yi~~~~~ 339 (371)
T 3fg6_A 268 HPPRLYGCSNKTGRFVIEEIP-GEFTQDD--LAEDDVMLLDAWEQIFIWIGKDANEVE-----KKESLKSAKMYLETDPS 339 (371)
T ss_dssp SCCEEEEEECTTSSCEEEECC-SSCCGGG--SCTTSEEEEECSSCEEEEECTTCCHHH-----HHHHHHHHTTCC-----
T ss_pred cCcEEEEEEcCCCcEEEEEec-ccccHhH--CCCCCEEEEeCCCEEEEEECCCCCHHH-----HHHHHHHHHHHHHhCcc
Confidence 45999988864332 111 1233333 578899999999999999999866311 011111 12222222
Q ss_pred hcCCCCeEEEEeCCCCcHHHHHhhc
Q 005362 643 ERSITPKLIFIRGGQDDATIFENYL 667 (700)
Q Consensus 643 ~R~~~p~~~vv~~g~~~~~~f~~~L 667 (700)
.|+...++.+|.||... ..|.++.
T Consensus 340 ~r~~~t~i~~v~eG~Ep-~~Fk~~F 363 (371)
T 3fg6_A 340 GRDKRTPIVIIKQGHEP-PTFTGWF 363 (371)
T ss_dssp -----CCEEEEETTCCC-HHHHTTS
T ss_pred CCCCCCCEEEecCCCCC-HHHHhhh
Confidence 46555678899998632 3454443
No 41
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=94.68 E-value=0.26 Score=55.86 Aligned_cols=69 Identities=12% Similarity=0.163 Sum_probs=47.0
Q ss_pred CcchHHHHHHHHHhhccccCCCcccceEEEEecCCCCCCCCccccccccCcccCCCcchhhccCCCcchHHHHHHHHHHH
Q 005362 245 GRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQ 324 (700)
Q Consensus 245 ~~~~G~Al~~a~~ll~~~g~~~~~~gkii~f~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~ 324 (700)
+.++|.||.+|..++...+. +...=+|++||+|--+.|.. . ....-....|..+.+
T Consensus 140 ~t~l~daL~~a~~~f~~~~~-k~~~k~IiL~TDg~~p~~~~--~---------------------~~~~~~~~~a~~l~~ 195 (609)
T 1jey_A 140 DYSLSEVLWVCANLFSDVQF-KMSHKRIMLFTNEDNPHGND--S---------------------AKASRARTKAGDLRD 195 (609)
T ss_dssp CCCHHHHHHHHHHHHHTCSS-CEEEEEEEEEESCSCTTTTC--H---------------------HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhch-hhcCCEEEEEcCCCCCCCCc--h---------------------HHHHHHHHHHHHHHh
Confidence 46899999999999986521 11124899999986544310 0 001123578999999
Q ss_pred cCcEEEEeeecCC
Q 005362 325 AGVCVDIFAITNE 337 (700)
Q Consensus 325 ~~isvdlf~~~~~ 337 (700)
.||.|.+|.++..
T Consensus 196 ~gI~i~~igig~~ 208 (609)
T 1jey_A 196 TGIFLDLMHLKKP 208 (609)
T ss_dssp HTEEEEEEEBCCT
T ss_pred cCcEEEEEecCCC
Confidence 9999999987654
No 42
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=94.50 E-value=0.073 Score=59.50 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=28.7
Q ss_pred CCcEEEEEEECCCChhH------HHHHHHHHHHHHHhCCCCcEEEEeeecce
Q 005362 120 ARPVYVAAVDLSSSEEF------LELTRSALQAALEAVPSGALFGLATFSHK 165 (700)
Q Consensus 120 ~~p~~vFvID~s~~~~~------l~~~~~~l~~~l~~lp~~~~vgiItf~~~ 165 (700)
.+..++|+||+|.+... ++....+....+..+.++.+||+|+|++.
T Consensus 367 ~~~~v~lvvD~SgSM~~~~~~~~l~~~~~Aa~l~~~~~~~~d~vglv~Fs~~ 418 (538)
T 1yvr_A 367 TGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTEKDSHMVAFSDE 418 (538)
T ss_dssp CCCCEEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHHHHHCSSEEEEEESSS
T ss_pred CCceEEEEEECccccCCCCCCCcHHHHHHHHHHHHHHhccCCceEEEEECCC
Confidence 45679999999998621 33322222223333445679999999963
No 43
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A
Probab=94.12 E-value=0.06 Score=56.58 Aligned_cols=81 Identities=11% Similarity=0.129 Sum_probs=50.4
Q ss_pred hccceEeeccCCCCC-CC----CCccchhhhccCCCcEEEEecC--ceEEEEEecCCCCCCCCCCCccHHHHHHHHH-HH
Q 005362 570 VYPLLTSYSTPDKQA-FP----RHSLSRAALITSGSPIFLLDAF--TTIIVFYSSTADPTLPFPPPQDCLLRTTINK-MK 641 (700)
Q Consensus 570 iyP~L~~~~~~~~~~-~p----~~~L~~~~~~~~~~~i~LlD~~--~~i~i~~g~~~~~~~~~~~~~~~~~~~~i~~-l~ 641 (700)
..|+||.+.+..+.- +. ..++..+. ++++.+||||+| ..||||+|+.+++. +-.....+..+ ++
T Consensus 246 ~~~rLy~vs~~~G~~~v~ev~~~~~~~q~~--L~s~dv~ILD~g~~~~IyVW~G~~a~~~------er~~A~~~A~~y~~ 317 (347)
T 1j72_A 246 QAAALYKVSDATGQMNLTKVADSSPFALEL--LISDDCFVLDNGLCGKIYIWKGRKANEK------ERQAALQVAEGFIS 317 (347)
T ss_dssp CCCEEEEEECTTSSCEEEEEECSSSBCGGG--CCTTSEEEEECGGGSEEEEEECTTCCHH------HHHHHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCEEEEeeccCCCCCHHH--cCCCCEEEEecCCCcEEEEEeCCCCCHH------HHHHHHHHHHHHHH
Confidence 479999998643320 00 01233333 588999999999 99999999987642 11111222222 33
Q ss_pred H-hcCCCCeEEEEeCCCC
Q 005362 642 Q-ERSITPKLIFIRGGQD 658 (700)
Q Consensus 642 ~-~R~~~p~~~vv~~g~~ 658 (700)
. .|+...++.+|.+|..
T Consensus 318 ~~~rp~~~~i~~v~eG~E 335 (347)
T 1j72_A 318 RMQYAPNTQVEILPQGRE 335 (347)
T ss_dssp HHTCCTTCEEEEEETTCC
T ss_pred hcCCCCCCeEEEEcCCCC
Confidence 3 5666778889999873
No 44
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=93.91 E-value=2.7 Score=47.89 Aligned_cols=45 Identities=22% Similarity=0.192 Sum_probs=32.3
Q ss_pred CcEEEEEEECCCCh-hHHHHHHH---HHHHHHHhCCCCcEEEEeeecce
Q 005362 121 RPVYVAAVDLSSSE-EFLELTRS---ALQAALEAVPSGALFGLATFSHK 165 (700)
Q Consensus 121 ~p~~vFvID~s~~~-~~l~~~~~---~l~~~l~~lp~~~~vgiItf~~~ 165 (700)
|-=.+|++|+|.++ ..++.|++ .|.+.|..+..+.|+||.+|-+.
T Consensus 111 pvDly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~~r~Gfgsf~Dk 159 (690)
T 3fcs_B 111 PVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDK 159 (690)
T ss_dssp CEEEEEEEECSGGGHHHHHHTTTTTHHHHHHHHHHCSCEEEEEEEECCC
T ss_pred CccEEEEecCCcchHHHHHHHHHHHHHHHHHHHhhCcCceEEeEEeecc
Confidence 34478999999997 45554444 44455666678899999999664
No 45
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G*
Probab=93.63 E-value=0.093 Score=60.73 Aligned_cols=92 Identities=13% Similarity=0.203 Sum_probs=54.6
Q ss_pred hhhccceEeeccCCCCC-CCC-C-ccchhhhccCCCcEEEEecCceEEEEEecCCCCCCCCCCCccHHHHHHHHHHH---
Q 005362 568 RAVYPLLTSYSTPDKQA-FPR-H-SLSRAALITSGSPIFLLDAFTTIIVFYSSTADPTLPFPPPQDCLLRTTINKMK--- 641 (700)
Q Consensus 568 ~~iyP~L~~~~~~~~~~-~p~-~-~L~~~~~~~~~~~i~LlD~~~~i~i~~g~~~~~~~~~~~~~~~~~~~~i~~l~--- 641 (700)
....|+||.+++..+.- +.. . .+.. ..+.++.+||||++..||||+|+.++.. +....+....+-++
T Consensus 610 ~~~~~rLf~~s~~~G~~~v~ev~~~f~Q--~dL~~~dv~iLD~~~eifvWiG~~a~~~-----er~~al~~A~~Y~~~~~ 682 (729)
T 1d0n_A 610 DAHPPRLFACSNKIGRFVIEEVPGEFMQ--EDLATDDVMLLDTWDQVFVWVGKDSQDE-----EKTEALTSAKRYIDTDP 682 (729)
T ss_dssp HHSCCEEEEEECTTTCCEEEECCSSCCG--GGCCTTSEEEEECSSCEEEEECTTSCHH-----HHSSHHHHHHHHHHHCT
T ss_pred cccCCeEEEEEcCCCcEEEEEecCcccH--hHCCCCCEEEEeCCCEEEEEECCCCCHH-----HHHHHHHHHHHHHHhCc
Confidence 45789999998644320 000 1 2333 2357899999999999999999986531 11112222223333
Q ss_pred HhcCCCCeEEEEeCCCCcHHHHHhhc
Q 005362 642 QERSITPKLIFIRGGQDDATIFENYL 667 (700)
Q Consensus 642 ~~R~~~p~~~vv~~g~~~~~~f~~~L 667 (700)
..|.+..++.+|.+|... ..|.+++
T Consensus 683 ~~r~~~~pi~~V~~G~Ep-~~F~~~F 707 (729)
T 1d0n_A 683 AHRDRRTPITVVKQGFEP-PSFVGWF 707 (729)
T ss_dssp TCCCTTCCEEEEETTCCC-HHHHTTC
T ss_pred ccCCCCCcEEEEeCCCCC-HHHHhhh
Confidence 356665677788888632 3355444
No 46
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=93.11 E-value=4.6 Score=43.55 Aligned_cols=191 Identities=14% Similarity=0.138 Sum_probs=92.2
Q ss_pred CcEEEEEEECCCCh-hHHHHH---HHHHHHHHHhCCCCcEEEEeeecce-EEEE-EccCC--CCceeeeeeCCCCCcccc
Q 005362 121 RPVYVAAVDLSSSE-EFLELT---RSALQAALEAVPSGALFGLATFSHK-IGLY-DVQGA--IPVVKNVFIPSDTEDTLS 192 (700)
Q Consensus 121 ~p~~vFvID~s~~~-~~l~~~---~~~l~~~l~~lp~~~~vgiItf~~~-V~~~-~l~~~--~~~~~~~~~~~~~~~~~~ 192 (700)
|-=.+|++|+|.+. ..++.+ ...|.+.|..+..+.|+||.+|-+. |.=| +..+. +..+.. +. .
T Consensus 111 pvDLy~LmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~riGfgsFvDk~v~P~~~~~p~~~l~nPc~-----~~----~ 181 (472)
T 3t3p_B 111 PVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCY-----DM----K 181 (472)
T ss_dssp CEEEEEEEECSGGGHHHHHHTTTHHHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCSHHHHHCTTT-----TT----T
T ss_pred CceEEEEEccCcchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeccccCccccCChhhhhcCCCc-----cc----c
Confidence 34478999999997 445544 4445555666677899999999553 2111 00000 000000 00 0
Q ss_pred ccccccCccC-cCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHH--HhhccccCCCccc
Q 005362 193 LELEDVMPLS-QFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLF--NYLGSEYGNTFAL 269 (700)
Q Consensus 193 ~dl~~~~p~~-~~l~~l~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~--~ll~~~g~~~~~~ 269 (700)
...+. |+. +...++.+....+.+.+..+.-.. +. | .|...+.+-+++|. .-+.=... .
T Consensus 182 ~~c~p--~f~fr~~l~LT~d~~~F~~~V~~~~iSG-n~------D------~PEgg~dAl~qaavC~~~igWR~~----a 242 (472)
T 3t3p_B 182 TTCLP--MFGYKHVLTLTDQVTRFNEEVKKQSVSR-NR------D------APEGGFDAIMQATVCDEKIGWRND----A 242 (472)
T ss_dssp SCCCC--CCSEEEEEEEESCHHHHHHHHHHCCCCC-CS------S------SSBCHHHHHHHHHHCHHHHTCCSS----S
T ss_pred cCCCC--CcceeEeeccCCCHHHHHHHHhhccccC-CC------C------CCchHHHHHHHHhcchhhcCCCCC----c
Confidence 00000 110 112455555566667777654331 11 1 14455655566664 22321111 2
Q ss_pred ceEEEEecCCCC--CCCCccccccccCcccCCCcchhhccCCCc---chHHHHHHHHHHHcCcEEEEeeecCCCcCh
Q 005362 270 ARVFAFLSGPPD--HGAGQLDTRRYGEQYASKGEDADRALLPEQ---TPFYKDLAAVAVQAGVCVDIFAITNEYTDL 341 (700)
Q Consensus 270 gkii~f~~g~pt--~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~---~~fY~~la~~~~~~~isvdlf~~~~~~~dl 341 (700)
-|+++|++-.+- .|-|++...-.++.-..|- +....|.... ..-..+|+..+.+++|.+ ||+......++
T Consensus 243 ~rllV~~TDa~~H~agDgkL~GIv~pnDg~CHL-~~~~~Y~~s~~~DYPSv~ql~~~l~e~nI~~-IFAVt~~~~~~ 317 (472)
T 3t3p_B 243 SHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHV-GSDNHYSASTTMDYPSLGLMTEKLSQKNINL-IFAVTENVVNL 317 (472)
T ss_dssp EEEEEEEESSCBCCTTGGGGGTCCCCCCCCCCB-CTTCBBTTTTTSCCCCHHHHHHHHHHTTCEE-EEEECGGGHHH
T ss_pred eEEEEEECCCCcCcCCCccccceecCCCCceEE-CCCCcccccccCCCCCHHHHHHHHHhcCccE-EEEEeccchhH
Confidence 589998887775 3777765432221111111 1111111111 112457788888888754 77777665544
No 47
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A
Probab=92.49 E-value=0.23 Score=52.13 Aligned_cols=88 Identities=14% Similarity=0.154 Sum_probs=56.9
Q ss_pred ccceEeeccCCCCCCCCCccchhhhccCCCcEEEEecCceEEEEEecCCCCCCCCCCCccHHHHHHHHHHH-HhcCCCCe
Q 005362 571 YPLLTSYSTPDKQAFPRHSLSRAALITSGSPIFLLDAFTTIIVFYSSTADPTLPFPPPQDCLLRTTINKMK-QERSITPK 649 (700)
Q Consensus 571 yP~L~~~~~~~~~~~p~~~L~~~~~~~~~~~i~LlD~~~~i~i~~g~~~~~~~~~~~~~~~~~~~~i~~l~-~~R~~~p~ 649 (700)
-|+||.+........-...++.++ ++++-+||||++..+|+|+|+.++. .+....+.+...|+ ..|.....
T Consensus 135 ~~rL~~v~G~~~v~~~eV~~~~~s--Lns~d~FIL~~~~~iy~W~G~~s~~------~Er~~A~~~a~~i~~~~~~g~~~ 206 (347)
T 1j72_A 135 VQRLYQVKGKKNIRATERALNWDS--FNTGDCFILDLGQNIFAWCGGKSNI------LERNKARDLALAIRDSERQGKAQ 206 (347)
T ss_dssp EEEEEEEECSSSCEEEEECSSGGG--CBTTSEEEEEETTEEEEEECTTCCH------HHHHHHHHHHHHHHTTSCCSSCE
T ss_pred CcEEEEEECCCceEEEEEeeeHHH--cCCCceEEEecCCEEEEEECCCCCH------HHHHHHHHHHHHHHhhccCCCce
Confidence 478998865321111111233334 5888999999999999999997553 12234456667775 34556678
Q ss_pred EEEEeCCCCcHHHHHhhc
Q 005362 650 LIFIRGGQDDATIFENYL 667 (700)
Q Consensus 650 ~~vv~~g~~~~~~f~~~L 667 (700)
+.++.+|...+. |...|
T Consensus 207 v~~v~EG~E~~~-Fw~~L 223 (347)
T 1j72_A 207 VEIVTDGEEPAE-MIQVL 223 (347)
T ss_dssp EEEEETTCCCHH-HHHHH
T ss_pred EEEEeCCCCHHH-HHHHh
Confidence 999999975544 55655
No 48
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=89.55 E-value=1 Score=49.97 Aligned_cols=32 Identities=6% Similarity=-0.037 Sum_probs=22.7
Q ss_pred CcchHHHHHHHHHhhccccCCCcccceEEEEecCCCCCC
Q 005362 245 GRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHG 283 (700)
Q Consensus 245 ~~~~G~Al~~a~~ll~~~g~~~~~~gkii~f~~g~pt~G 283 (700)
++.++.||..|...... ...|++++++.-+.|
T Consensus 440 gTdi~~~l~~a~~~~~~-------~~~vIliTD~~~~~g 471 (535)
T 2nvo_A 440 GTDCAQPILWAAQERLD-------VDTFVVYTDNETWAG 471 (535)
T ss_dssp CCCTTHHHHHHHHTTCC-------CSEEEEEESSCCCCC
T ss_pred CccHHHHHHHHHHhcCC-------CCEEEEEeCCCccCC
Confidence 46788888887655332 268999999876665
No 49
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G*
Probab=89.44 E-value=0.56 Score=54.18 Aligned_cols=90 Identities=14% Similarity=0.102 Sum_probs=58.9
Q ss_pred hccceEeeccCCCCCCCCCccchhhhccCCCcEEEEecCceEEEEEecCCCCCCCCCCCccHHHHHHHHHHHH-hcCCCC
Q 005362 570 VYPLLTSYSTPDKQAFPRHSLSRAALITSGSPIFLLDAFTTIIVFYSSTADPTLPFPPPQDCLLRTTINKMKQ-ERSITP 648 (700)
Q Consensus 570 iyP~L~~~~~~~~~~~p~~~L~~~~~~~~~~~i~LlD~~~~i~i~~g~~~~~~~~~~~~~~~~~~~~i~~l~~-~R~~~p 648 (700)
--|+||.+........-...++.++ ++++.+||||++..+|+|.|+.... .+-.+-+.+...|+. .|.-..
T Consensus 132 ~~~rL~~vkG~~~v~~~eV~~s~~S--Lns~DvFILd~g~~iy~W~G~~s~~------~Er~kA~~~a~~i~~~er~g~~ 203 (729)
T 1d0n_A 132 VVQRLLQVKGRRVVRATEVPVSWES--FNNGDCFILDLGNNIYQWCGSKSNR------FERLKATQVSKGIRDNERSGRA 203 (729)
T ss_dssp CCCEEEEEECSSSCEEEEECSSGGG--CCSSSEEEEECSSEEEEEECTTCCH------HHHHHHHHHHHHHHHHSGGGCS
T ss_pred CCcEEEEEECCCcEEEEEEeccHHH--cCCCCeEEEEcCCEEEEEECCCCCH------HHHHHHHHHHHHHhhhhcCCCc
Confidence 3589998875322111111244444 4889999999999999999997552 122344677777774 666667
Q ss_pred eEEEEeCCCCcHHHHHhhcc
Q 005362 649 KLIFIRGGQDDATIFENYLI 668 (700)
Q Consensus 649 ~~~vv~~g~~~~~~f~~~Lv 668 (700)
.+.+|.+|...+ .|...|-
T Consensus 204 ~i~~v~Eg~e~~-eFw~~LG 222 (729)
T 1d0n_A 204 QVSVFEEGAEPE-AMLQVLG 222 (729)
T ss_dssp EEEEEETTCCCH-HHHHHHC
T ss_pred cEEEecCCCChH-HHHHHcC
Confidence 899999987544 4555553
No 50
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A
Probab=84.40 E-value=1.2 Score=46.40 Aligned_cols=82 Identities=12% Similarity=0.116 Sum_probs=49.9
Q ss_pred ccceEeeccCCCCC--CCCCccchhhhccCCCcEEEEecCceEEEEEecCCCCCCCCCCCccHHHHHHHHHHHHhcCCCC
Q 005362 571 YPLLTSYSTPDKQA--FPRHSLSRAALITSGSPIFLLDAFTTIIVFYSSTADPTLPFPPPQDCLLRTTINKMKQERSITP 648 (700)
Q Consensus 571 yP~L~~~~~~~~~~--~p~~~L~~~~~~~~~~~i~LlD~~~~i~i~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~R~~~p 648 (700)
-|+||.+....... .-+..+..++ ++++.+||||++..+|+|+|+.+++. +-...+.+.+.| + .
T Consensus 124 ~~rL~~v~g~~~~~~~~~eV~~~~ss--Lns~d~FIL~~~~~iyvW~G~~s~~~------er~~A~~~a~~l---~---~ 189 (344)
T 2fh1_A 124 STRLFQVRANSAGATRAVEVLPKAGA--LNSNDAFVLKTPSAAYLWVGTGASEA------EKTGAQELLRVL---R---A 189 (344)
T ss_dssp SSEEEEEEECTTCCEEEEEECCSGGG--CBTTSEEEEECSSCEEEEECTTCCHH------HHHHHHHHHHHT---T---C
T ss_pred CceEEEEECCCCCceEEEEecCchhh--cCCCceEEEecCCEEEEEECCCCCHH------HHHHHHHHHHHh---C---C
Confidence 47999997532110 1111233334 58889999999999999999976531 112234444444 2 3
Q ss_pred eEEEEeCCCCcHHHHHhhc
Q 005362 649 KLIFIRGGQDDATIFENYL 667 (700)
Q Consensus 649 ~~~vv~~g~~~~~~f~~~L 667 (700)
.+.+|.+|...+. |...|
T Consensus 190 ~i~~v~EG~E~~~-Fw~~L 207 (344)
T 2fh1_A 190 QPVQVAEGSEPDG-FWEAL 207 (344)
T ss_dssp CCEEEETTCCCHH-HHHHT
T ss_pred CcEEEeCCCCcHH-HHHhc
Confidence 5688899975554 55544
No 51
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=82.18 E-value=60 Score=35.10 Aligned_cols=233 Identities=19% Similarity=0.168 Sum_probs=109.4
Q ss_pred CcEEEEEEECCCCh-hHHHHHH---HHHHHHHHhCCCCcEEEEeeecceEEEEEccCCCCceeeeeeCCCCCcccccccc
Q 005362 121 RPVYVAAVDLSSSE-EFLELTR---SALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELE 196 (700)
Q Consensus 121 ~p~~vFvID~s~~~-~~l~~~~---~~l~~~l~~lp~~~~vgiItf~~~V~~~~l~~~~~~~~~~~~~~~~~~~~~~dl~ 196 (700)
|-=.+|++|+|.+. ..++.++ ..|.+.|..+..+.|+||.+|-+..-. .... . ....+.
T Consensus 132 PVDLyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~RiGfGsFvDK~v~-P~~~--~--------------~p~~l~ 194 (503)
T 3v4v_B 132 PVDLYYLMDLSYSMKDDLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTVL-PFVS--T--------------VPSKLR 194 (503)
T ss_dssp CEEEEEEEECSGGGHHHHHHHHHSSHHHHHHHTTTCSCEEEEEEEECCCSST-TTSC--C--------------CHHHHH
T ss_pred ceeEEEEEecCcchhhHHHHHHHHHHHHHHHHHhhCcCcEEeeeeecccccC-Cccc--C--------------CHHHhc
Confidence 33478999999997 4455454 445555666677899999999543210 0000 0 000111
Q ss_pred cc--------C-ccC-cCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHH--HhhccccC
Q 005362 197 DV--------M-PLS-QFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLF--NYLGSEYG 264 (700)
Q Consensus 197 ~~--------~-p~~-~~l~~l~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~--~ll~~~g~ 264 (700)
++ . |+. .-..++.+....+.+.+....-. .+ .| .+...+.+-+++|. +-+.=..
T Consensus 195 ~PC~~~~~~c~p~f~fr~~l~LT~d~~~F~~~V~~~~iS-Gn------lD------~PEggfDAlmQaavC~~~IgWR~- 260 (503)
T 3v4v_B 195 HPCPTRLERCQSPFSFHHVLSLTGDAQAFEREVGRQSVS-GN------LD------SPEGGFDAILQAALCQEQIGWRN- 260 (503)
T ss_dssp CCSSCSSSCCCCCCSEEEEEEEESCSHHHHHHHTTCCCC-CC------SS------SSBCHHHHHHHHHHCHHHHTCCS-
T ss_pred CCCcCCCCCCCCCcceEEEEEecCCHHHHHHHHhhcCcc-CC------CC------CCchHHHHHHHHhhcccccCCCc-
Confidence 10 0 110 11234444444555666554332 11 11 14455655566664 2232111
Q ss_pred CCcccceEEEEecCCCC--CCCCccccccccCcccCCCcchhhccCC---CcchHHHHHHHHHHHcCcEEEEeeecCCCc
Q 005362 265 NTFALARVFAFLSGPPD--HGAGQLDTRRYGEQYASKGEDADRALLP---EQTPFYKDLAAVAVQAGVCVDIFAITNEYT 339 (700)
Q Consensus 265 ~~~~~gkii~f~~g~pt--~GpG~l~~~~~~~~~~~~~~~~e~~~~~---~~~~fY~~la~~~~~~~isvdlf~~~~~~~ 339 (700)
..|+++|++-.+- .|-|++...-.++.-..|- +....|.. ....-..+|++.+.+++|.+ ||+......
T Consensus 261 ----a~rllV~~TDA~fH~agDgkLaGIv~pNDg~CHL-~~~~~Yt~s~~~DYPSv~ql~~kL~ennI~~-IFAVt~~~~ 334 (503)
T 3v4v_B 261 ----VSRLLVFTSDDTFHTAGDGKLGGIFMPSDGHCHL-DSNGLYSRSTEFDYPSVGQVAQALSAANIQP-IFAVTSAAL 334 (503)
T ss_dssp ----SEEEEEEEESSCBCCTTGGGTTTCCSCCCSSCCB-CTTSBBGGGGGSCCCCHHHHHHHHHHHTEEE-EEEECSSSH
T ss_pred ----ceEEEEEECCCCcCcCCCccccceecCCCCCeEE-CCCCccccccccCCCCHHHHHHHHHhcCCeE-EEEEcccch
Confidence 2589998887665 3667664322211111111 10001100 01112456777888888843 688777765
Q ss_pred Chhhhhhcccccce-EEEEeCCCCCC---chhHHHHHHhccCcceeeEEEEec-CCCceeeee
Q 005362 340 DLASLKFLSIESGG-SLFLYSSTDDS---TLPQDIYRMLSRPYAFNCIMRLRT-SSEFKPGHS 397 (700)
Q Consensus 340 dl~~l~~l~~~TGG-~~~~y~~~~~~---~l~~dl~~~l~~~~~~~a~~rvR~-S~gl~i~~~ 397 (700)
++. ..|++.-.| .+-... -+.. .|..+-++.+. -...|+... .+|++|+-.
T Consensus 335 ~~Y--~~L~~~ip~s~vg~Ls-~dSsNiv~LI~~aY~~i~----S~V~l~~~~~p~~l~v~y~ 390 (503)
T 3v4v_B 335 PVY--QELSKLIPKSAVGELS-EDSSNVVQLIMDAYNSLS----STVTLEHSSLPPGVHISYE 390 (503)
T ss_dssp HHH--HHHHTTSTTCEEEECC-TTSCTHHHHHHHHHHHHH----TCEEEECCCCCTTEEEEBC
T ss_pred hHH--HHHHHhCCCceeeEcc-ccchhHHHHHHHHHHHhh----eEEEEecCCCCCceEEEEE
Confidence 543 344444333 333322 2322 23334444443 234444433 456766533
No 52
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens}
Probab=81.39 E-value=2.1 Score=45.01 Aligned_cols=82 Identities=13% Similarity=0.112 Sum_probs=48.8
Q ss_pred ccceEeeccCCCCC--CCCCccchhhhccCCCcEEEEecC-ceEEEEEecCCCCCCCCCCCccHHHHHHHHHHHHhcCCC
Q 005362 571 YPLLTSYSTPDKQA--FPRHSLSRAALITSGSPIFLLDAF-TTIIVFYSSTADPTLPFPPPQDCLLRTTINKMKQERSIT 647 (700)
Q Consensus 571 yP~L~~~~~~~~~~--~p~~~L~~~~~~~~~~~i~LlD~~-~~i~i~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~R~~~ 647 (700)
-|+||.+....... .-+..++.++ ++++.+||||++ ..+|+|.|+.+.. .+-...+.+.+.|+.
T Consensus 165 ~~rL~~vrg~~~~~vr~~EV~~~~ss--Lns~d~FILd~~~~~iyvW~G~~ss~------~Er~~A~~~a~~i~~----- 231 (371)
T 3fg6_A 165 PTRLFQVRRNLASITRIVEVDVDANS--LNSNDVFVLKLPQNSGYIWVGKGASQ------EEEKGAEYVASVLKC----- 231 (371)
T ss_dssp CCEEEEEECCSSSCCEEEEECSSGGG--CBTTSEEEEECTTSEEEEEECTTCCH------HHHHHHHHHHHHTTC-----
T ss_pred ccEEEEEeccCCCceEEEEecCCHHH--ccCCCeEEEEcCCCeEEEEECCCCCH------HHHHHHHHHHHHhcC-----
Confidence 47999997532111 1111233334 588899999999 9999999997553 111233444444431
Q ss_pred CeEEEEeCCCCcHHHHHhhc
Q 005362 648 PKLIFIRGGQDDATIFENYL 667 (700)
Q Consensus 648 p~~~vv~~g~~~~~~f~~~L 667 (700)
...+|.+|...+. |...|
T Consensus 232 -~~~~v~EG~Ep~~-Fw~~L 249 (371)
T 3fg6_A 232 -KTLRIQEGEEPEE-FWNSL 249 (371)
T ss_dssp -EEEEEETTCCCHH-HHHHT
T ss_pred -CeEEEeCCCCCHH-HHHHc
Confidence 2367888875554 54444
No 53
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=78.54 E-value=4.1 Score=39.88 Aligned_cols=62 Identities=15% Similarity=0.244 Sum_probs=47.9
Q ss_pred ceEEEEecCCCCCCCCccccccccCcccCCCcchhhccCCCcchHHHHHHHHHHHcCcEEEEeeecC-C---CcChhhhh
Q 005362 270 ARVFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITN-E---YTDLASLK 345 (700)
Q Consensus 270 gkii~f~~g~pt~GpG~l~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~-~---~~dl~~l~ 345 (700)
-.||++++|.-|.|..- .+.|+.+.+.||.|+.+.+.. + ..|..+|.
T Consensus 11 k~iillTDG~~~~g~~p-----------------------------~~aa~~a~~~gi~v~tIGig~~~~~~~~~~~~L~ 61 (242)
T 3rag_A 11 RQILVITDGCSNIGPDP-----------------------------VEAARRAHRHGIVVNVIGIVGRGDAGEQGYQEAH 61 (242)
T ss_dssp EEEEEEESSCCCSSSCH-----------------------------HHHHHHHHHTTCEEEEEEECCSSSCTTCCCHHHH
T ss_pred cEEEEEccCCCCCCCCH-----------------------------HHHHHHHHHCCCEEEEEEecCCccccchhHHHHH
Confidence 47888888887776321 257888899999999998843 3 45678999
Q ss_pred hcccccceEEEEeCC
Q 005362 346 FLSIESGGSLFLYSS 360 (700)
Q Consensus 346 ~l~~~TGG~~~~y~~ 360 (700)
.++..|||..|....
T Consensus 62 ~IA~~tGG~yf~a~~ 76 (242)
T 3rag_A 62 SIADAGGGMCRIVQP 76 (242)
T ss_dssp HHHHHTTSCEEEECG
T ss_pred HHHHhcCCeEEEeeH
Confidence 999999999887743
No 54
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=75.23 E-value=3.3 Score=39.77 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=31.5
Q ss_pred EEEEEEECCCCh-hHHHHHHHHHH---HHHHhCCCCcEEEEeeecce
Q 005362 123 VYVAAVDLSSSE-EFLELTRSALQ---AALEAVPSGALFGLATFSHK 165 (700)
Q Consensus 123 ~~vFvID~s~~~-~~l~~~~~~l~---~~l~~lp~~~~vgiItf~~~ 165 (700)
=.+|++|+|.+. ..++.+++.+. +.|+.+.++.|+||.+|-+.
T Consensus 5 Dl~fl~D~S~SM~~di~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk 51 (212)
T 2iue_A 5 DLYFLMGLSGSAQGHLSNVQTLGSDLLKALNEISRSGRIGFGSIVNM 51 (212)
T ss_dssp EEEEEEECCGGGTTTHHHHHHHHHHHHHHHHHHCSCEEEEEEEESSS
T ss_pred EEEEEEeCCCcchhHHHHHHHHHHHHHHHHHhhCcCceEEEEEEEcC
Confidence 378999999997 45565655554 44555677899999999554
No 55
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=75.13 E-value=0.61 Score=34.40 Aligned_cols=25 Identities=24% Similarity=0.679 Sum_probs=15.6
Q ss_pred cccCcceeEecCceEecceEEEccCCC
Q 005362 52 RCENCYAYFNTYCELEQWAWTCSLCGS 78 (700)
Q Consensus 52 RC~~C~ayiNp~~~~~~~~w~C~~C~~ 78 (700)
-|.||++++.-- -..-.|+||+|..
T Consensus 35 ~CaRCGg~v~lr--~~k~~WvC~lC~k 59 (62)
T 2a20_A 35 FCARCGGRVSLR--SNKVMWVCNLCRK 59 (62)
T ss_dssp ECTTSEEEEESS--TTCEEEEEHHHHH
T ss_pred eecccCCEeeec--CCeEEEEehhhhh
Confidence 466777765431 1124799999964
No 56
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=71.48 E-value=0.78 Score=35.78 Aligned_cols=17 Identities=24% Similarity=0.688 Sum_probs=15.5
Q ss_pred ceEEEccCCCCCCCChh
Q 005362 69 WAWTCSLCGSLNGLSSQ 85 (700)
Q Consensus 69 ~~w~C~~C~~~N~~p~~ 85 (700)
-.|+|++|...|.++.+
T Consensus 16 ~tWVCpICsfsN~v~s~ 32 (76)
T 2j9u_B 16 STWVCPICMVSNETQGE 32 (76)
T ss_dssp EEEECTTTCCEEEESSC
T ss_pred cceECccccccCcCccc
Confidence 58999999999999876
No 57
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A
Probab=70.96 E-value=0.85 Score=48.57 Aligned_cols=49 Identities=6% Similarity=0.009 Sum_probs=0.0
Q ss_pred ccceEeeccCCC--CCCCCCccchhhhccCCCcEEEEecCceEEEEEecCCCC
Q 005362 571 YPLLTSYSTPDK--QAFPRHSLSRAALITSGSPIFLLDAFTTIIVFYSSTADP 621 (700)
Q Consensus 571 yP~L~~~~~~~~--~~~p~~~L~~~~~~~~~~~i~LlD~~~~i~i~~g~~~~~ 621 (700)
.|+||.+..... ...-+..++.++ ++++.+||||++..+|+|.|+....
T Consensus 178 ~~rLf~VrG~~~~~~ra~EV~~s~sS--Lns~d~FILd~~~~iyvW~G~~ss~ 228 (398)
T 3fg7_A 178 STRLFQVQGTGANNTKAFEVPARANF--LNSNDVFVLKTQSCCYLWCGKGCSG 228 (398)
T ss_dssp -----------------------------------------------------
T ss_pred CcEEEEEECCCCCceEEEEecCCHHH--ccCCceEEEEeCCeEEEEeCCCCCH
Confidence 478887765321 111111233334 4888999999999999999998764
No 58
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=69.85 E-value=1.2e+02 Score=32.33 Aligned_cols=190 Identities=17% Similarity=0.137 Sum_probs=94.1
Q ss_pred cEEEEEEECCCCh-hHHHHH---HHHHHHHHHhCCCCcEEEEeeecce-EEEEE-ccCC-CCceeeeeeCCCCCcccccc
Q 005362 122 PVYVAAVDLSSSE-EFLELT---RSALQAALEAVPSGALFGLATFSHK-IGLYD-VQGA-IPVVKNVFIPSDTEDTLSLE 194 (700)
Q Consensus 122 p~~vFvID~s~~~-~~l~~~---~~~l~~~l~~lp~~~~vgiItf~~~-V~~~~-l~~~-~~~~~~~~~~~~~~~~~~~d 194 (700)
-=..|++|+|.+. ..++.+ ...|.+.|..+..+.|+||..|-+. |.=|. ..+. ...+.. + . ..
T Consensus 123 VDLyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~riGfGsFvDK~v~P~~~t~p~~~~nPC~-----~----~-~~ 192 (454)
T 3vi3_B 123 IDLYYLMDLSYSMKDDLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTTPAKLRNPCT-----S----E-QN 192 (454)
T ss_dssp EEEEEEEECSGGGHHHHHHHTTHHHHHHHHHTTTCSSEEEEEEEECCCSSTTTSCCSTTTTTCCSC-----S----S-SC
T ss_pred eeEEEEecCCcchhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeccccCCcccCChHHhcCCCc-----C----c-cC
Confidence 3477999999997 444444 4455555666777899999999543 22110 0000 000000 0 0 00
Q ss_pred ccccCccC-cCccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCccCCCcchHHHHHHHHHhhccccCCCcccceEE
Q 005362 195 LEDVMPLS-QFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVF 273 (700)
Q Consensus 195 l~~~~p~~-~~l~~l~~~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ll~~~g~~~~~~gkii 273 (700)
.+. |+. .-..++.+....+.+.+..+.-.. + .| .|...+-+-+++|.- -+..|=.. .-|++
T Consensus 193 c~~--~f~fr~~l~LT~d~~~F~~~V~~~~isG-n------~D------~PEgg~DAl~Qaavc-~~~igWR~--a~rll 254 (454)
T 3vi3_B 193 CTT--PFSYKNVLSLTNKGEVFNELVGKQRISG-N------LD------SPEGGFDAIMQVAVC-GSLIGWRN--VTRLL 254 (454)
T ss_dssp CCC--CCSEEEEEEEESCHHHHHHHHTTCCCCC-C------SS------SSBCHHHHHHHHHHC-HHHHTCCS--SEEEE
T ss_pred CCC--CcceeeeeecCCCHHHHHHHHhhccccC-C------Cc------CCchhHHHHHHHhcc-ccccCCcc--ceEEE
Confidence 111 111 113455555566677777654321 1 11 144556555666641 11112110 25899
Q ss_pred EEecCCCC--CCCCccccccccCcccCCCcchhhccCCC---cchHHHHHHHHHHHcCcEEEEeeecCCCcChh
Q 005362 274 AFLSGPPD--HGAGQLDTRRYGEQYASKGEDADRALLPE---QTPFYKDLAAVAVQAGVCVDIFAITNEYTDLA 342 (700)
Q Consensus 274 ~f~~g~pt--~GpG~l~~~~~~~~~~~~~~~~e~~~~~~---~~~fY~~la~~~~~~~isvdlf~~~~~~~dl~ 342 (700)
+|++-.+- .|-|++...-.++.-..|- + ...|... ...-..+|++.+.+++|-+ ||+.+....++.
T Consensus 255 V~~TDa~fH~agDgkL~GIv~PNDg~CHL-~-~~~Yt~s~~~DYPSv~ql~~~l~e~nI~~-IFAVt~~~~~~Y 325 (454)
T 3vi3_B 255 VFSTDAGFHFAGDGKLGGIVLPNDGQCHL-E-NNMYTMSHYYDYPSIAHLVQKLSENNIQT-IFAVTEEFQPVY 325 (454)
T ss_dssp EEEESSCBCCTTTTGGGTCCSCCCCCCCE-E-TTEECCTTTSCCCCHHHHHHHHHHTTEEE-EEEEEGGGHHHH
T ss_pred EEECCCCcCcCCCccccceecCCCCccEe-C-CCcccccccCCCCCHHHHHHHHHhcCCcE-EEEEcCccchHH
Confidence 88887775 4888775432222111111 1 1111111 1122567888888888854 787776655544
No 59
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=51.49 E-value=4.1 Score=38.25 Aligned_cols=28 Identities=25% Similarity=0.641 Sum_probs=19.0
Q ss_pred CCCcccCcce-eEecCceEecceEEEccCC
Q 005362 49 MLPRCENCYA-YFNTYCELEQWAWTCSLCG 77 (700)
Q Consensus 49 ~~~RC~~C~a-yiNp~~~~~~~~w~C~~C~ 77 (700)
...+|++|++ |+...-. ....++|++|+
T Consensus 133 ~l~~C~~Cgg~fv~~~~~-~~~~f~Cp~C~ 161 (192)
T 2avu_E 133 QLSSCNCCGGNFITHAHQ-PVGSFACSLCQ 161 (192)
T ss_dssp EEEECTTTCCEEEEESSC-CSSCCCCTTC-
T ss_pred eeCcCCCCCCCeeCccCC-CCCCCcCCCCC
Confidence 3578999998 4433332 23699999999
No 60
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=50.92 E-value=3.7 Score=34.42 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=24.6
Q ss_pred CCCcccCcceeEecCceEecceEEEccCCCCCCCChh
Q 005362 49 MLPRCENCYAYFNTYCELEQWAWTCSLCGSLNGLSSQ 85 (700)
Q Consensus 49 ~~~RC~~C~ayiNp~~~~~~~~w~C~~C~~~N~~p~~ 85 (700)
.|++|.+|+-- |..-....-+|+.|+..|-.++.
T Consensus 66 ~p~~C~~CG~~---F~~~~~kPsrCP~CkSe~Ie~P~ 99 (105)
T 2gmg_A 66 KPAQCRKCGFV---FKAEINIPSRCPKCKSEWIEEPR 99 (105)
T ss_dssp CCCBBTTTCCB---CCCCSSCCSSCSSSCCCCBCCCC
T ss_pred ECcChhhCcCe---ecccCCCCCCCcCCCCCccCCcc
Confidence 57999999975 32111356899999999977654
No 61
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=48.49 E-value=4 Score=33.05 Aligned_cols=30 Identities=23% Similarity=0.570 Sum_probs=20.1
Q ss_pred CCcccCcceeEecC-----------ceEec--ceEEEccCCCC
Q 005362 50 LPRCENCYAYFNTY-----------CELEQ--WAWTCSLCGSL 79 (700)
Q Consensus 50 ~~RC~~C~ayiNp~-----------~~~~~--~~w~C~~C~~~ 79 (700)
.-+|..|+-...|- ..|++ ..|+|+.|+..
T Consensus 35 ~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 77 (87)
T 1s24_A 35 KWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGAT 77 (87)
T ss_dssp EEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCC
T ss_pred eEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCCC
Confidence 46899998665553 23433 57999999864
No 62
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=47.18 E-value=11 Score=30.19 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=19.7
Q ss_pred CCcccCcceeEecCceEecceEEEccCCCCCC
Q 005362 50 LPRCENCYAYFNTYCELEQWAWTCSLCGSLNG 81 (700)
Q Consensus 50 ~~RC~~C~ayiNp~~~~~~~~w~C~~C~~~N~ 81 (700)
.-.|..|++-. .-......|.|.-|+....
T Consensus 27 ~y~Cp~CG~~~--v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 27 DHACPNCGEDR--VDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp CEECSSSCCEE--EEEEETTEEEETTTCCEEE
T ss_pred cCcCCCCCCcc--eeccCCCeEECCCCCCEec
Confidence 35788898721 1112237999999998744
No 63
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=46.86 E-value=3.6 Score=32.04 Aligned_cols=31 Identities=23% Similarity=0.550 Sum_probs=20.4
Q ss_pred CCCcccCcceeEecCceEecceEEEccCCCCCCCC
Q 005362 49 MLPRCENCYAYFNTYCELEQWAWTCSLCGSLNGLS 83 (700)
Q Consensus 49 ~~~RC~~C~ayiNp~~~~~~~~w~C~~C~~~N~~p 83 (700)
.++||. |+++ -|..-..+.-.|+ ||..-.+.
T Consensus 3 ~vv~C~-C~~~--~~~~~~~kT~~C~-CG~~~~~~ 33 (71)
T 1gh9_A 3 IIFRCD-CGRA--LYSREGAKTRKCV-CGRTVNVK 33 (71)
T ss_dssp EEEEET-TSCC--EEEETTCSEEEET-TTEEEECC
T ss_pred EEEECC-CCCE--EEEcCCCcEEECC-CCCeeeec
Confidence 468999 9997 1111123577898 99876654
No 64
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=46.70 E-value=4 Score=28.84 Aligned_cols=29 Identities=24% Similarity=0.652 Sum_probs=16.3
Q ss_pred CcccCcceeEecC----ceEec--ceEEEccCCCC
Q 005362 51 PRCENCYAYFNTY----CELEQ--WAWTCSLCGSL 79 (700)
Q Consensus 51 ~RC~~C~ayiNp~----~~~~~--~~w~C~~C~~~ 79 (700)
-+|..|+-...|- ..|++ ..|+|+.|+..
T Consensus 5 y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 5 YVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp EEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred EECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCc
Confidence 3677776544432 22332 46888888753
No 65
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=42.26 E-value=14 Score=31.96 Aligned_cols=29 Identities=24% Similarity=0.523 Sum_probs=23.8
Q ss_pred CCCcccCcceeEecCceEecceEEEccCCCCC
Q 005362 49 MLPRCENCYAYFNTYCELEQWAWTCSLCGSLN 80 (700)
Q Consensus 49 ~~~RC~~C~ayiNp~~~~~~~~w~C~~C~~~N 80 (700)
..|.|.+|.+ .|+--++..|+|+-|++.-
T Consensus 26 ~lP~CP~C~s---eytYeDg~l~vCPeC~hEW 54 (138)
T 2akl_A 26 TLPPCPQCNS---EYTYEDGALLVCPECAHEW 54 (138)
T ss_dssp CSCCCTTTCC---CCCEECSSSEEETTTTEEE
T ss_pred cCCCCCCCCC---cceEecCCeEECCcccccc
Confidence 4688999987 5666677899999999864
No 66
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=42.04 E-value=6.1 Score=28.71 Aligned_cols=11 Identities=45% Similarity=1.256 Sum_probs=7.1
Q ss_pred ceEEEccCCCC
Q 005362 69 WAWTCSLCGSL 79 (700)
Q Consensus 69 ~~w~C~~C~~~ 79 (700)
..|+|+.|+..
T Consensus 34 ~dw~CP~Cg~~ 44 (52)
T 1yk4_A 34 DDWVCPLCGAP 44 (52)
T ss_dssp TTCBCTTTCCB
T ss_pred CCCcCCCCCCC
Confidence 46777777753
No 67
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=39.53 E-value=6.4 Score=28.82 Aligned_cols=11 Identities=45% Similarity=1.129 Sum_probs=7.5
Q ss_pred ceEEEccCCCC
Q 005362 69 WAWTCSLCGSL 79 (700)
Q Consensus 69 ~~w~C~~C~~~ 79 (700)
..|+|+.|+..
T Consensus 35 ~dw~CP~Cg~~ 45 (54)
T 4rxn_A 35 DDWVCPLCGVG 45 (54)
T ss_dssp TTCBCTTTCCB
T ss_pred CCCcCcCCCCc
Confidence 46777777763
No 68
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=37.87 E-value=18 Score=41.01 Aligned_cols=45 Identities=24% Similarity=0.259 Sum_probs=32.9
Q ss_pred CcEEEEEEECCCCh-hHHHHHH---HHHHHHHHhCCCCcEEEEeeecce
Q 005362 121 RPVYVAAVDLSSSE-EFLELTR---SALQAALEAVPSGALFGLATFSHK 165 (700)
Q Consensus 121 ~p~~vFvID~s~~~-~~l~~~~---~~l~~~l~~lp~~~~vgiItf~~~ 165 (700)
|-=.+|++|+|.++ ..++.++ +.|.+.|..+..+.|+||.+|-+.
T Consensus 104 pvDly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk 152 (687)
T 3k6s_B 104 PIDLYYLMDLSYSMLDDLRNVKKLGGDLLRALNEITESGRIGFGSFVDK 152 (687)
T ss_dssp CCEEEEEEECSSTTHHHHHTTTTCCTTHHHHHHSSCCSCEEEEEEECCC
T ss_pred ceeEEEEEcCCcchHHHHHHHHHHHHHHHHHHHhhCcCcEEeeEEeecc
Confidence 44578999999997 4454444 445566677788999999999653
No 69
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.54 E-value=8 Score=30.39 Aligned_cols=29 Identities=21% Similarity=0.780 Sum_probs=19.3
Q ss_pred CcccCcceeEecCceEec--ceEEEccCCCC
Q 005362 51 PRCENCYAYFNTYCELEQ--WAWTCSLCGSL 79 (700)
Q Consensus 51 ~RC~~C~ayiNp~~~~~~--~~w~C~~C~~~ 79 (700)
..|..|+-=+.--|.+.. ..|+|.+|...
T Consensus 43 ~~C~~Ck~rVC~~Crv~~~~~~W~C~VC~k~ 73 (76)
T 2csz_A 43 NTCRGCNHLVCRDCRIQESNGTWRCKVCSGP 73 (76)
T ss_dssp SEETTTTEECCTTSEEECSTTCEEEHHHHSS
T ss_pred CcCcccChhhcccccccCCCCCEEEeeCchh
Confidence 456666666666665542 68999999654
No 70
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=35.54 E-value=36 Score=24.06 Aligned_cols=27 Identities=19% Similarity=0.437 Sum_probs=19.9
Q ss_pred CCcccCcceeEecCceEec--ceEEEccCCCC
Q 005362 50 LPRCENCYAYFNTYCELEQ--WAWTCSLCGSL 79 (700)
Q Consensus 50 ~~RC~~C~ayiNp~~~~~~--~~w~C~~C~~~ 79 (700)
...|..|++ .-..++. +.++|.-||..
T Consensus 5 ~~~CP~C~~---~~l~~d~~~gelvC~~CG~v 33 (50)
T 1pft_A 5 QKVCPACES---AELIYDPERGEIVCAKCGYV 33 (50)
T ss_dssp CCSCTTTSC---CCEEEETTTTEEEESSSCCB
T ss_pred cEeCcCCCC---cceEEcCCCCeEECcccCCc
Confidence 467999998 2234453 68999999985
No 71
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=35.26 E-value=12 Score=35.61 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=18.4
Q ss_pred CCcccCcceeEecCceEecceEEEccCCCCC
Q 005362 50 LPRCENCYAYFNTYCELEQWAWTCSLCGSLN 80 (700)
Q Consensus 50 ~~RC~~C~ayiNp~~~~~~~~w~C~~C~~~N 80 (700)
.-+|..|+-.... ..-|+|+.|+..-
T Consensus 171 ~~~C~~CG~i~~g-----~~p~~CP~C~~~k 196 (202)
T 1yuz_A 171 FHLCPICGYIHKG-----EDFEKCPICFRPK 196 (202)
T ss_dssp EEECSSSCCEEES-----SCCSBCTTTCCBG
T ss_pred EEEECCCCCEEcC-----cCCCCCCCCCCCh
Confidence 4589999965442 2349999999753
No 72
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=33.26 E-value=9.4 Score=28.04 Aligned_cols=11 Identities=36% Similarity=0.936 Sum_probs=6.9
Q ss_pred ceEEEccCCCC
Q 005362 69 WAWTCSLCGSL 79 (700)
Q Consensus 69 ~~w~C~~C~~~ 79 (700)
..|+|+.|+..
T Consensus 35 ~dw~CP~Cga~ 45 (55)
T 2v3b_B 35 ADWVCPDCGVG 45 (55)
T ss_dssp TTCCCTTTCCC
T ss_pred CCCcCCCCCCC
Confidence 45777777653
No 73
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.51 E-value=26 Score=25.12 Aligned_cols=25 Identities=24% Similarity=0.678 Sum_probs=18.2
Q ss_pred CcccCcce--eEecCceEecceEEEccCCCC
Q 005362 51 PRCENCYA--YFNTYCELEQWAWTCSLCGSL 79 (700)
Q Consensus 51 ~RC~~C~a--yiNp~~~~~~~~w~C~~C~~~ 79 (700)
-.|.+|++ ++- -...+|.|+=|+..
T Consensus 20 k~CP~CG~~~fm~----~~~~R~~C~kCG~t 46 (50)
T 3j20_Y 20 KFCPRCGPGVFMA----DHGDRWACGKCGYT 46 (50)
T ss_dssp EECSSSCSSCEEE----ECSSEEECSSSCCE
T ss_pred ccCCCCCCceEEe----cCCCeEECCCCCCE
Confidence 45999998 433 23479999999864
No 74
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=32.49 E-value=9.9 Score=29.46 Aligned_cols=11 Identities=27% Similarity=0.607 Sum_probs=7.9
Q ss_pred ceEEEccCCCC
Q 005362 69 WAWTCSLCGSL 79 (700)
Q Consensus 69 ~~w~C~~C~~~ 79 (700)
..|+|+.|+..
T Consensus 39 ddw~CP~Cga~ 49 (70)
T 1dx8_A 39 DSFMCPACRSP 49 (70)
T ss_dssp TTCBCTTTCCB
T ss_pred CCCcCCCCCCC
Confidence 46888888764
No 75
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=31.98 E-value=9.8 Score=30.34 Aligned_cols=30 Identities=27% Similarity=0.665 Sum_probs=17.9
Q ss_pred CCcccCcceeEecCc-----------eEec--ceEEEccCCCC
Q 005362 50 LPRCENCYAYFNTYC-----------ELEQ--WAWTCSLCGSL 79 (700)
Q Consensus 50 ~~RC~~C~ayiNp~~-----------~~~~--~~w~C~~C~~~ 79 (700)
.-+|..|+-...|-. .|++ ..|+|+.|+..
T Consensus 27 ~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 69 (81)
T 2kn9_A 27 LFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAA 69 (81)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCC
T ss_pred eEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 457888875555422 2322 46888888863
No 76
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=31.87 E-value=14 Score=28.15 Aligned_cols=31 Identities=19% Similarity=0.420 Sum_probs=25.2
Q ss_pred CCCCcccCcceeEecCceEec-ceEEEccCCC
Q 005362 48 HMLPRCENCYAYFNTYCELEQ-WAWTCSLCGS 78 (700)
Q Consensus 48 ~~~~RC~~C~ayiNp~~~~~~-~~w~C~~C~~ 78 (700)
..+..|.+|++--.|-.+-.. +...||-|+.
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl 38 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGL 38 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTEEECHHHHH
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCccHHHHH
Confidence 457899999999888777663 5699999984
No 77
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=31.69 E-value=12 Score=24.08 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=11.6
Q ss_pred ceEEEccCCCCCCC
Q 005362 69 WAWTCSLCGSLNGL 82 (700)
Q Consensus 69 ~~w~C~~C~~~N~~ 82 (700)
+-|.|+.|+..|--
T Consensus 4 gDW~C~~C~~~Nfa 17 (32)
T 2lk0_A 4 EDWLCNKCCLNNFR 17 (32)
T ss_dssp SEEECTTTCCEEET
T ss_pred CCCCcCcCcCCcCh
Confidence 46999999999843
No 78
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=30.89 E-value=8.5 Score=27.94 Aligned_cols=10 Identities=40% Similarity=1.405 Sum_probs=5.7
Q ss_pred ceEEEccCCC
Q 005362 69 WAWTCSLCGS 78 (700)
Q Consensus 69 ~~w~C~~C~~ 78 (700)
..|+|+.|+.
T Consensus 35 ~dw~CP~Cg~ 44 (52)
T 1e8j_A 35 DDWACPVCGA 44 (52)
T ss_dssp TTCCCSSSCC
T ss_pred CCCcCCCCCC
Confidence 3566666654
No 79
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=30.43 E-value=17 Score=31.34 Aligned_cols=33 Identities=21% Similarity=0.466 Sum_probs=25.0
Q ss_pred CcccCcceeEecCce----Eecc-----eEEEccCCCCCCCC
Q 005362 51 PRCENCYAYFNTYCE----LEQW-----AWTCSLCGSLNGLS 83 (700)
Q Consensus 51 ~RC~~C~ayiNp~~~----~~~~-----~w~C~~C~~~N~~p 83 (700)
.-|++|++++=|-.. +..+ .++|..||+...+|
T Consensus 66 ~~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~kR~p 107 (120)
T 1x0t_A 66 RYCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIMRYP 107 (120)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCEEEEE
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEc
Confidence 469999999998632 2222 57899999988766
No 80
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=29.37 E-value=15 Score=33.25 Aligned_cols=32 Identities=19% Similarity=0.560 Sum_probs=24.2
Q ss_pred CCcccCcceeEecCceEe---cceEEEccCCCCCC
Q 005362 50 LPRCENCYAYFNTYCELE---QWAWTCSLCGSLNG 81 (700)
Q Consensus 50 ~~RC~~C~ayiNp~~~~~---~~~w~C~~C~~~N~ 81 (700)
-..|..|+-.+.--|.+. ...|.|.+|...-.
T Consensus 85 g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k~re 119 (153)
T 2zet_C 85 RRQCLECSLFVCKSCSHAHPEEQGWLCDPCHLARV 119 (153)
T ss_dssp CEECTTTCCEECGGGEECCSSSSSCEEHHHHHHHH
T ss_pred CCcCCCCCchhhcccccccCCCCcEeeHHHHHHHH
Confidence 467888888888777754 26899999987654
No 81
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=26.37 E-value=18 Score=31.15 Aligned_cols=27 Identities=26% Similarity=0.651 Sum_probs=18.1
Q ss_pred CcccCcceeEecCceEecceE-EEccCCCCCC
Q 005362 51 PRCENCYAYFNTYCELEQWAW-TCSLCGSLNG 81 (700)
Q Consensus 51 ~RC~~C~ayiNp~~~~~~~~w-~C~~C~~~N~ 81 (700)
.||.+|+..... +.... .||-|+..+.
T Consensus 74 ~~C~~CG~~~e~----~~~~~~~CP~Cgs~~~ 101 (119)
T 2kdx_A 74 LECKDCSHVFKP----NALDYGVCEKCHSKNV 101 (119)
T ss_dssp EECSSSSCEECS----CCSTTCCCSSSSSCCC
T ss_pred EEcCCCCCEEeC----CCCCCCcCccccCCCc
Confidence 688888775443 33456 7888888753
No 82
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=24.07 E-value=17 Score=23.48 Aligned_cols=14 Identities=29% Similarity=0.805 Sum_probs=11.6
Q ss_pred ceEEEccCCCCCCC
Q 005362 69 WAWTCSLCGSLNGL 82 (700)
Q Consensus 69 ~~w~C~~C~~~N~~ 82 (700)
.-|+|+-|+..|--
T Consensus 5 gDW~C~~C~~~Nfa 18 (33)
T 2k1p_A 5 NDWQCKTCSNVNWA 18 (33)
T ss_dssp SSCBCSSSCCBCCT
T ss_pred CCcccCCCCCcccc
Confidence 46999999999853
No 83
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=23.86 E-value=30 Score=25.83 Aligned_cols=27 Identities=22% Similarity=0.556 Sum_probs=20.5
Q ss_pred CCCcccCcceeEecCceEecceEEEccCCCCCCCC
Q 005362 49 MLPRCENCYAYFNTYCELEQWAWTCSLCGSLNGLS 83 (700)
Q Consensus 49 ~~~RC~~C~ayiNp~~~~~~~~w~C~~C~~~N~~p 83 (700)
.+.+|.+|+.|== +-+|+.||.....+
T Consensus 5 ~mr~C~~CgvYTL--------k~~CP~CG~~T~~~ 31 (60)
T 2apo_B 5 RMKKCPKCGLYTL--------KEICPKCGEKTVIP 31 (60)
T ss_dssp CCEECTTTCCEES--------SSBCSSSCSBCBCC
T ss_pred hceeCCCCCCEec--------cccCcCCCCcCCCC
Confidence 4678999998822 45699999877654
No 84
>1b3t_A Protein (nuclear protein EBNA1); protein-DNA complex, DNA-binding, activator, origin-binding protein, protein/DNA complex; HET: DNA; 2.20A {Human herpesvirus 4} SCOP: d.58.8.1 PDB: 1vhi_A
Probab=23.54 E-value=91 Score=26.67 Aligned_cols=33 Identities=15% Similarity=0.337 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHhCCC---CcEEEEeeecceEE
Q 005362 135 EFLELTRSALQAALEAVPS---GALFGLATFSHKIG 167 (700)
Q Consensus 135 ~~l~~~~~~l~~~l~~lp~---~~~vgiItf~~~V~ 167 (700)
-+.+.+|++|++-+..-|. +++|-+++||+.|-
T Consensus 110 ~fAe~~kDAi~Dyi~t~P~PT~~~~VtvcsFdd~V~ 145 (147)
T 1b3t_A 110 IFAEVLKDAIKDLVMTKPAPTCNIRVTVCSFDDGVD 145 (147)
T ss_dssp HHHHHHHHHHHHHHHTSCTTGGGEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCCcceEEEEEeCCCCcc
Confidence 3456788888887776663 67999999998764
No 85
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=23.35 E-value=31 Score=30.34 Aligned_cols=31 Identities=29% Similarity=0.683 Sum_probs=23.8
Q ss_pred CcccCcceeEecCceEec------ceEEEccCCCCCC
Q 005362 51 PRCENCYAYFNTYCELEQ------WAWTCSLCGSLNG 81 (700)
Q Consensus 51 ~RC~~C~ayiNp~~~~~~------~~w~C~~C~~~N~ 81 (700)
..|..|+-.+..-|.... ..|.|++|...-.
T Consensus 73 ~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~re 109 (134)
T 1zbd_B 73 VVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQRE 109 (134)
T ss_dssp EECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHHHH
T ss_pred CCCCCCCcccccccCCccCCCCCccceechhhHHHHH
Confidence 678888888888877632 4899999997654
No 86
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=23.07 E-value=26 Score=20.70 Aligned_cols=25 Identities=32% Similarity=0.903 Sum_probs=20.0
Q ss_pred cccCcceeEecCceEe-cceEEEccC
Q 005362 52 RCENCYAYFNTYCELE-QWAWTCSLC 76 (700)
Q Consensus 52 RC~~C~ayiNp~~~~~-~~~w~C~~C 76 (700)
.|-.|--|=|-||.-. .+.|-|.=|
T Consensus 2 ~cvscv~fgngfcgdncgnswacsgc 27 (27)
T 2hgo_A 2 TCVSCVNFGNGFCGDNCGNSWACSGC 27 (27)
T ss_dssp CCCSCEEETTTEEECSSSCEEECSCC
T ss_pred cceEeEeecCccccCCcCCcccccCC
Confidence 3778888888888766 589999876
No 87
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=22.72 E-value=24 Score=23.10 Aligned_cols=18 Identities=28% Similarity=0.610 Sum_probs=13.6
Q ss_pred ecceEEEccCCCCCCCCh
Q 005362 67 EQWAWTCSLCGSLNGLSS 84 (700)
Q Consensus 67 ~~~~w~C~~C~~~N~~p~ 84 (700)
+.+.|.|..|...|....
T Consensus 4 ~~G~W~C~~C~v~N~~~~ 21 (34)
T 3gj5_B 4 GSGSWDCEVCLVQNKADS 21 (34)
T ss_dssp --CCEECTTTCCEECSSC
T ss_pred CCCceECCeeEeECcccc
Confidence 457899999999997643
No 88
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=21.78 E-value=18 Score=30.97 Aligned_cols=30 Identities=27% Similarity=0.475 Sum_probs=24.3
Q ss_pred CCCcccCcceeEecCceEec-ceEEEccCCC
Q 005362 49 MLPRCENCYAYFNTYCELEQ-WAWTCSLCGS 78 (700)
Q Consensus 49 ~~~RC~~C~ayiNp~~~~~~-~~w~C~~C~~ 78 (700)
.+..|.+|++---|..+-+. ..+.||-|+.
T Consensus 4 ~~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl 34 (115)
T 4hc9_A 4 MGRECVNCGATSTPLWRRDGTGHYLCNACGL 34 (115)
T ss_dssp --CCCTTTCCSCCSSCEECTTSCEECHHHHH
T ss_pred CCCCCCCCCCccCCcceECCCCCCcCcchhh
Confidence 45789999999999887764 6799999985
No 89
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=21.74 E-value=26 Score=30.38 Aligned_cols=34 Identities=24% Similarity=0.463 Sum_probs=25.3
Q ss_pred CcccCcceeEecCce----Eecc-----eEEEccCCCCCCCCh
Q 005362 51 PRCENCYAYFNTYCE----LEQW-----AWTCSLCGSLNGLSS 84 (700)
Q Consensus 51 ~RC~~C~ayiNp~~~----~~~~-----~w~C~~C~~~N~~p~ 84 (700)
.-|++|++++=|-.. +..+ .++|..||+...+|.
T Consensus 61 ~~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~~kR~p~ 103 (123)
T 2k3r_A 61 RYCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHIMRYPY 103 (123)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTEEEEEEC
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEec
Confidence 369999999998633 2222 678999999877663
No 90
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=20.55 E-value=16 Score=25.70 Aligned_cols=30 Identities=23% Similarity=0.458 Sum_probs=22.1
Q ss_pred CCCcccCcceeEecCceEe-cceEEEccCCC
Q 005362 49 MLPRCENCYAYFNTYCELE-QWAWTCSLCGS 78 (700)
Q Consensus 49 ~~~RC~~C~ayiNp~~~~~-~~~w~C~~C~~ 78 (700)
....|.+|++--.|..+-. .....||-|+.
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl 33 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGHYLCNACGL 33 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCCCBCSHHHH
T ss_pred CCCCCCCcCCCCCCcCccCCCCCccchHHHH
Confidence 4578999999877766554 34578998885
No 91
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=20.54 E-value=21 Score=39.31 Aligned_cols=17 Identities=24% Similarity=0.688 Sum_probs=0.0
Q ss_pred ceEEEccCCCCCCCChh
Q 005362 69 WAWTCSLCGSLNGLSSQ 85 (700)
Q Consensus 69 ~~w~C~~C~~~N~~p~~ 85 (700)
..|+|++|...|++|..
T Consensus 116 ~tWvC~ICsfsN~~~~~ 132 (566)
T 1w7p_D 116 STWVCPICMVSNETQGE 132 (566)
T ss_dssp -----------------
T ss_pred cceeccccccCCCCCCC
Confidence 58999999999999876
No 92
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=20.30 E-value=43 Score=33.49 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCcEEEEeeecc
Q 005362 135 EFLELTRSALQAALEAVPSGALFGLATFSH 164 (700)
Q Consensus 135 ~~l~~~~~~l~~~l~~lp~~~~vgiItf~~ 164 (700)
.+|+.+..+|.++++.|.++-|+++|||-+
T Consensus 207 ~EL~~L~~~L~~a~~~L~~gGrl~visfHS 236 (285)
T 1wg8_A 207 DELNALKEFLEQAAEVLAPGGRLVVIAFHS 236 (285)
T ss_dssp THHHHHHHHHHHHHHHEEEEEEEEEEECSH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEecCc
Confidence 678899999999999999999999999965
No 93
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.25 E-value=30 Score=24.94 Aligned_cols=29 Identities=24% Similarity=0.170 Sum_probs=20.1
Q ss_pred CCCcccCcceeEecCceEecceEEEccCCCCCCCC
Q 005362 49 MLPRCENCYAYFNTYCELEQWAWTCSLCGSLNGLS 83 (700)
Q Consensus 49 ~~~RC~~C~ayiNp~~~~~~~~w~C~~C~~~N~~p 83 (700)
..-.|.+|++- .-.+.|.|.=||+.|--|
T Consensus 13 ~k~iCpkC~a~------~~~gaw~CrKCG~~~lr~ 41 (51)
T 3j21_g 13 KKYVCLRCGAT------NPWGAKKCRKCGYKRLRP 41 (51)
T ss_dssp SEEECTTTCCE------ECTTCSSCSSSSSCCCEE
T ss_pred CCccCCCCCCc------CCCCceecCCCCCccccc
Confidence 34568888885 124789999999885433
Done!