Query 005363
Match_columns 700
No_of_seqs 243 out of 1777
Neff 4.6
Searched_HMMs 46136
Date Thu Mar 28 22:16:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005363.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005363hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.4 1.2E-13 2.6E-18 148.1 4.9 69 629-698 211-280 (348)
2 PF13639 zf-RING_2: Ring finge 99.3 3.5E-13 7.6E-18 103.9 2.3 44 649-692 1-44 (44)
3 COG5540 RING-finger-containing 99.1 5.8E-11 1.2E-15 124.4 3.9 51 647-697 322-373 (374)
4 PF12678 zf-rbx1: RING-H2 zinc 99.1 7.3E-11 1.6E-15 101.1 3.6 46 647-692 18-73 (73)
5 PHA02929 N1R/p28-like protein; 99.0 2.3E-10 5E-15 118.1 4.9 51 646-696 172-227 (238)
6 COG5243 HRD1 HRD ubiquitin lig 99.0 2.5E-10 5.4E-15 122.2 4.4 52 645-696 284-345 (491)
7 KOG0317 Predicted E3 ubiquitin 98.9 5.2E-10 1.1E-14 116.9 4.0 51 645-698 236-286 (293)
8 PLN03208 E3 ubiquitin-protein 98.8 3.1E-09 6.8E-14 106.4 4.5 49 646-697 16-80 (193)
9 KOG0823 Predicted E3 ubiquitin 98.8 2.8E-09 6.1E-14 108.7 3.6 51 645-698 44-97 (230)
10 KOG0320 Predicted E3 ubiquitin 98.8 4.1E-09 8.9E-14 103.9 3.7 53 643-696 126-178 (187)
11 PF13920 zf-C3HC4_3: Zinc fing 98.7 5.5E-09 1.2E-13 82.7 2.8 46 648-696 2-48 (50)
12 cd00162 RING RING-finger (Real 98.7 9.8E-09 2.1E-13 76.5 3.8 44 650-695 1-45 (45)
13 PF13923 zf-C3HC4_2: Zinc fing 98.7 9.5E-09 2.1E-13 77.6 3.2 39 651-691 1-39 (39)
14 KOG0802 E3 ubiquitin ligase [P 98.7 5.6E-09 1.2E-13 119.1 2.2 51 646-696 289-341 (543)
15 smart00504 Ubox Modified RING 98.6 4.6E-08 1E-12 79.8 4.2 46 649-697 2-47 (63)
16 PHA02926 zinc finger-like prot 98.6 3.4E-08 7.3E-13 100.6 3.6 51 646-696 168-230 (242)
17 PF12861 zf-Apc11: Anaphase-pr 98.6 5E-08 1.1E-12 86.3 3.9 50 647-696 20-82 (85)
18 PF14634 zf-RING_5: zinc-RING 98.6 5.4E-08 1.2E-12 75.5 3.5 44 650-693 1-44 (44)
19 PF15227 zf-C3HC4_4: zinc fing 98.5 5E-08 1.1E-12 75.5 2.5 38 651-691 1-42 (42)
20 TIGR00599 rad18 DNA repair pro 98.5 1E-07 2.2E-12 105.0 3.8 50 645-697 23-72 (397)
21 PF00097 zf-C3HC4: Zinc finger 98.4 9.8E-08 2.1E-12 72.1 2.5 39 651-691 1-41 (41)
22 smart00184 RING Ring finger. E 98.4 1.9E-07 4.1E-12 67.2 3.5 38 651-691 1-39 (39)
23 COG5194 APC11 Component of SCF 98.3 5E-07 1.1E-11 78.9 3.8 48 648-695 20-80 (88)
24 COG5574 PEX10 RING-finger-cont 98.3 3.5E-07 7.6E-12 95.1 2.8 50 646-698 213-264 (271)
25 KOG0828 Predicted E3 ubiquitin 98.2 8.2E-07 1.8E-11 98.5 2.3 52 646-697 569-635 (636)
26 KOG2164 Predicted E3 ubiquitin 98.2 9.4E-07 2E-11 98.8 2.7 47 648-697 186-237 (513)
27 PF13445 zf-RING_UBOX: RING-ty 98.1 2.6E-06 5.7E-11 66.5 3.0 38 651-689 1-43 (43)
28 KOG0287 Postreplication repair 98.1 1.3E-06 2.9E-11 93.3 1.4 48 646-696 21-68 (442)
29 KOG1734 Predicted RING-contain 98.1 1E-06 2.3E-11 91.8 0.6 51 645-695 221-280 (328)
30 KOG2177 Predicted E3 ubiquitin 98.0 1.7E-06 3.6E-11 85.8 1.7 45 646-693 11-55 (386)
31 PF04564 U-box: U-box domain; 98.0 2.4E-06 5.2E-11 73.1 2.2 48 647-697 3-51 (73)
32 COG5432 RAD18 RING-finger-cont 98.0 2.9E-06 6.2E-11 89.3 2.3 47 646-695 23-69 (391)
33 KOG1493 Anaphase-promoting com 97.9 3.1E-06 6.7E-11 73.5 1.0 50 646-695 18-80 (84)
34 smart00744 RINGv The RING-vari 97.9 1.1E-05 2.4E-10 64.6 3.7 42 650-692 1-49 (49)
35 PF11793 FANCL_C: FANCL C-term 97.8 3.5E-06 7.5E-11 72.0 -0.4 49 648-696 2-66 (70)
36 COG5219 Uncharacterized conser 97.8 4.6E-06 9.9E-11 97.9 0.4 52 645-696 1466-1523(1525)
37 KOG2930 SCF ubiquitin ligase, 97.7 2.5E-05 5.4E-10 71.4 2.5 51 644-694 42-106 (114)
38 KOG4265 Predicted E3 ubiquitin 97.5 5.5E-05 1.2E-09 81.9 3.0 49 646-697 288-337 (349)
39 KOG4172 Predicted E3 ubiquitin 97.4 4.1E-05 8.9E-10 62.8 0.8 47 648-697 7-55 (62)
40 KOG1039 Predicted E3 ubiquitin 97.4 5.8E-05 1.3E-09 82.2 2.1 51 646-696 159-221 (344)
41 KOG0825 PHD Zn-finger protein 97.4 2.9E-05 6.2E-10 90.1 -0.7 52 646-697 121-172 (1134)
42 KOG4445 Uncharacterized conser 97.3 8.2E-05 1.8E-09 79.0 0.9 55 643-697 110-187 (368)
43 PF14835 zf-RING_6: zf-RING of 97.2 6.8E-05 1.5E-09 63.4 -0.0 44 648-696 7-51 (65)
44 KOG0311 Predicted E3 ubiquitin 97.2 5.9E-05 1.3E-09 81.5 -1.2 51 645-697 40-91 (381)
45 KOG0978 E3 ubiquitin ligase in 97.2 0.00012 2.5E-09 85.6 1.1 48 647-697 642-690 (698)
46 KOG0804 Cytoplasmic Zn-finger 97.2 0.00018 3.9E-09 79.8 2.3 50 646-697 173-223 (493)
47 KOG1428 Inhibitor of type V ad 97.1 0.00027 5.8E-09 85.9 3.1 53 644-696 3482-3544(3738)
48 KOG1785 Tyrosine kinase negati 97.0 0.00028 6.1E-09 77.3 1.5 46 650-698 371-418 (563)
49 KOG4159 Predicted E3 ubiquitin 96.9 0.00062 1.4E-08 75.6 3.4 49 646-697 82-130 (398)
50 KOG4692 Predicted E3 ubiquitin 96.7 0.0012 2.6E-08 71.6 3.3 49 646-697 420-468 (489)
51 KOG2660 Locus-specific chromos 96.6 0.00052 1.1E-08 73.9 0.1 48 646-695 13-60 (331)
52 PF11789 zf-Nse: Zinc-finger o 96.5 0.0013 2.8E-08 54.4 1.7 43 646-690 9-53 (57)
53 KOG0297 TNF receptor-associate 96.5 0.0012 2.7E-08 73.2 1.9 51 645-697 18-68 (391)
54 KOG2879 Predicted E3 ubiquitin 96.4 0.0026 5.6E-08 67.3 3.8 50 645-696 236-287 (298)
55 KOG1941 Acetylcholine receptor 96.3 0.0014 3E-08 71.9 0.9 47 647-693 364-413 (518)
56 COG5152 Uncharacterized conser 96.2 0.0024 5.1E-08 64.8 1.9 45 648-695 196-240 (259)
57 KOG2114 Vacuolar assembly/sort 96.2 0.003 6.6E-08 74.8 2.9 45 646-695 838-882 (933)
58 KOG1813 Predicted E3 ubiquitin 96.0 0.0032 6.8E-08 67.2 2.0 47 648-697 241-287 (313)
59 KOG4275 Predicted E3 ubiquitin 96.0 0.0026 5.5E-08 67.7 1.2 42 648-696 300-342 (350)
60 KOG1002 Nucleotide excision re 95.9 0.0035 7.6E-08 71.0 1.8 50 644-696 532-586 (791)
61 KOG3039 Uncharacterized conser 95.9 0.0067 1.4E-07 63.4 3.7 51 647-697 220-271 (303)
62 KOG1814 Predicted E3 ubiquitin 95.4 0.0084 1.8E-07 66.4 2.3 47 648-694 184-238 (445)
63 KOG2034 Vacuolar sorting prote 95.2 0.0091 2E-07 71.3 2.1 36 646-682 815-850 (911)
64 KOG3970 Predicted E3 ubiquitin 95.2 0.019 4E-07 59.5 3.8 52 646-698 48-107 (299)
65 PHA02825 LAP/PHD finger-like p 94.8 0.027 5.8E-07 55.6 3.7 49 644-696 4-59 (162)
66 COG5236 Uncharacterized conser 94.8 0.02 4.4E-07 62.3 3.0 50 643-695 56-107 (493)
67 PF10367 Vps39_2: Vacuolar sor 94.7 0.014 2.9E-07 52.1 1.2 33 646-679 76-108 (109)
68 PF05883 Baculo_RING: Baculovi 94.6 0.021 4.5E-07 55.0 2.3 36 648-683 26-67 (134)
69 KOG1571 Predicted E3 ubiquitin 94.5 0.018 3.9E-07 63.0 1.9 44 646-695 303-346 (355)
70 PF04641 Rtf2: Rtf2 RING-finge 94.5 0.04 8.6E-07 58.0 4.3 52 645-697 110-162 (260)
71 PHA02862 5L protein; Provision 94.5 0.027 5.9E-07 54.9 2.8 47 648-696 2-53 (156)
72 PF12906 RINGv: RING-variant d 94.4 0.02 4.4E-07 45.5 1.6 40 651-691 1-47 (47)
73 KOG3268 Predicted E3 ubiquitin 94.1 0.032 6.9E-07 56.1 2.4 52 645-696 162-228 (234)
74 PHA03096 p28-like protein; Pro 94.0 0.027 6E-07 60.3 1.9 45 649-693 179-231 (284)
75 PF14570 zf-RING_4: RING/Ubox 94.0 0.039 8.4E-07 44.6 2.3 45 651-695 1-47 (48)
76 KOG0827 Predicted E3 ubiquitin 93.9 0.0041 9E-08 68.3 -4.4 50 647-696 195-245 (465)
77 KOG1952 Transcription factor N 93.8 0.051 1.1E-06 64.9 3.8 49 647-695 190-246 (950)
78 KOG0801 Predicted E3 ubiquitin 93.7 0.02 4.4E-07 56.7 0.2 30 646-675 175-204 (205)
79 KOG2932 E3 ubiquitin ligase in 93.4 0.032 7E-07 60.1 1.1 46 648-697 90-135 (389)
80 COG5222 Uncharacterized conser 93.4 0.044 9.6E-07 58.8 2.1 42 649-693 275-318 (427)
81 KOG0826 Predicted E3 ubiquitin 93.1 0.091 2E-06 57.1 4.0 49 645-695 297-345 (357)
82 PF03854 zf-P11: P-11 zinc fin 92.9 0.052 1.1E-06 43.8 1.4 44 650-698 4-48 (50)
83 KOG1001 Helicase-like transcri 92.6 0.049 1.1E-06 64.6 1.2 44 649-696 455-500 (674)
84 KOG1940 Zn-finger protein [Gen 92.6 0.045 9.7E-07 58.5 0.8 45 649-693 159-204 (276)
85 PF14447 Prok-RING_4: Prokaryo 92.2 0.079 1.7E-06 43.9 1.6 48 647-699 6-53 (55)
86 COG5183 SSM4 Protein involved 92.1 0.095 2.1E-06 62.3 2.8 50 646-696 10-66 (1175)
87 COG5175 MOT2 Transcriptional r 91.9 0.11 2.5E-06 56.6 2.9 53 645-697 11-65 (480)
88 KOG3002 Zn finger protein [Gen 90.6 0.16 3.5E-06 55.0 2.4 45 646-697 46-92 (299)
89 PF08746 zf-RING-like: RING-li 89.9 0.17 3.8E-06 39.6 1.5 41 651-691 1-43 (43)
90 KOG0298 DEAD box-containing he 89.8 0.1 2.2E-06 64.8 0.2 44 648-693 1153-1196(1394)
91 COG5220 TFB3 Cdk activating ki 89.3 0.13 2.9E-06 53.8 0.6 48 646-693 8-61 (314)
92 PF10272 Tmpp129: Putative tra 89.1 0.55 1.2E-05 52.1 5.1 27 669-695 311-350 (358)
93 PF05290 Baculo_IE-1: Baculovi 88.1 0.52 1.1E-05 45.6 3.7 50 647-699 79-135 (140)
94 KOG3161 Predicted E3 ubiquitin 88.0 0.16 3.4E-06 59.3 0.1 44 647-693 10-54 (861)
95 KOG1609 Protein involved in mR 87.0 0.35 7.7E-06 50.9 2.0 49 648-696 78-134 (323)
96 KOG3053 Uncharacterized conser 85.9 0.36 7.8E-06 51.1 1.4 54 643-696 15-82 (293)
97 KOG0825 PHD Zn-finger protein 85.1 0.51 1.1E-05 56.4 2.2 51 646-696 94-154 (1134)
98 KOG0309 Conserved WD40 repeat- 84.1 0.54 1.2E-05 55.9 1.9 26 665-690 1044-1069(1081)
99 KOG4362 Transcriptional regula 83.8 0.29 6.3E-06 57.9 -0.5 46 647-695 20-68 (684)
100 KOG1812 Predicted E3 ubiquitin 83.7 0.49 1.1E-05 52.8 1.3 40 646-685 144-184 (384)
101 KOG2817 Predicted E3 ubiquitin 83.6 0.81 1.7E-05 51.1 2.8 49 648-696 334-385 (394)
102 KOG1100 Predicted E3 ubiquitin 82.6 0.6 1.3E-05 48.1 1.3 39 651-696 161-200 (207)
103 PF07800 DUF1644: Protein of u 79.4 2.1 4.5E-05 42.7 3.7 37 647-683 1-47 (162)
104 KOG3899 Uncharacterized conser 77.6 1.3 2.8E-05 47.8 1.9 27 669-695 325-364 (381)
105 KOG1829 Uncharacterized conser 72.8 1.4 3.1E-05 51.7 0.7 43 647-692 510-557 (580)
106 PF02891 zf-MIZ: MIZ/SP-RING z 71.0 3.7 8.1E-05 33.2 2.5 43 649-694 3-50 (50)
107 KOG0269 WD40 repeat-containing 70.9 3.1 6.7E-05 49.9 2.9 41 649-690 780-820 (839)
108 KOG1815 Predicted E3 ubiquitin 70.1 2.7 5.9E-05 47.7 2.2 38 646-685 68-105 (444)
109 KOG3005 GIY-YIG type nuclease 69.5 2.2 4.8E-05 45.6 1.2 49 648-696 182-243 (276)
110 PF14446 Prok-RING_1: Prokaryo 69.2 5.4 0.00012 33.2 3.1 44 647-694 4-50 (54)
111 KOG3039 Uncharacterized conser 68.3 3.5 7.6E-05 43.8 2.4 35 646-683 41-75 (303)
112 KOG2066 Vacuolar assembly/sort 67.5 2.2 4.8E-05 51.3 0.8 45 648-693 784-832 (846)
113 KOG3579 Predicted E3 ubiquitin 66.5 2.8 6.2E-05 45.2 1.3 37 647-686 267-307 (352)
114 KOG0802 E3 ubiquitin ligase [P 65.3 2.8 6E-05 48.8 1.0 47 645-698 476-522 (543)
115 KOG2807 RNA polymerase II tran 64.4 5.9 0.00013 43.6 3.2 48 647-694 329-376 (378)
116 KOG2068 MOT2 transcription fac 61.0 6.6 0.00014 43.2 2.8 49 649-697 250-299 (327)
117 KOG1812 Predicted E3 ubiquitin 59.3 4.5 9.9E-05 45.3 1.3 43 648-691 306-351 (384)
118 KOG4718 Non-SMC (structural ma 53.0 6.5 0.00014 41.0 1.1 44 647-692 180-223 (235)
119 KOG2169 Zn-finger transcriptio 52.2 17 0.00036 43.5 4.5 46 648-697 306-357 (636)
120 smart00249 PHD PHD zinc finger 52.1 8.8 0.00019 28.5 1.5 31 650-680 1-31 (47)
121 PF13901 DUF4206: Domain of un 50.9 11 0.00023 38.7 2.3 42 647-693 151-197 (202)
122 COG5109 Uncharacterized conser 46.4 13 0.00029 40.8 2.3 46 648-693 336-384 (396)
123 KOG3113 Uncharacterized conser 44.8 20 0.00043 38.5 3.2 48 648-697 111-159 (293)
124 KOG0824 Predicted E3 ubiquitin 44.5 7.4 0.00016 42.4 0.0 50 645-697 102-152 (324)
125 KOG3799 Rab3 effector RIM1 and 42.2 9.6 0.00021 37.3 0.4 50 645-694 62-116 (169)
126 PF10235 Cript: Microtubule-as 39.3 17 0.00037 33.2 1.5 40 648-699 44-83 (90)
127 PF07975 C1_4: TFIIH C1-like d 37.2 18 0.0004 29.8 1.2 42 651-692 2-50 (51)
128 TIGR00622 ssl1 transcription f 36.5 35 0.00076 32.4 3.1 46 648-693 55-111 (112)
129 PF04710 Pellino: Pellino; In 36.2 12 0.00026 42.3 0.0 29 665-696 305-339 (416)
130 smart00132 LIM Zinc-binding do 36.2 28 0.00061 24.9 2.0 38 650-696 1-38 (39)
131 KOG3842 Adaptor protein Pellin 36.1 30 0.00065 38.3 2.9 53 645-697 338-415 (429)
132 KOG4185 Predicted E3 ubiquitin 36.1 7.1 0.00015 41.5 -1.7 48 647-694 206-265 (296)
133 PF05605 zf-Di19: Drought indu 36.0 18 0.00039 29.3 1.0 38 648-695 2-41 (54)
134 PF00628 PHD: PHD-finger; Int 35.3 15 0.00033 28.7 0.5 43 651-693 2-50 (51)
135 KOG2071 mRNA cleavage and poly 34.3 22 0.00047 42.0 1.7 36 646-681 511-556 (579)
136 PF06906 DUF1272: Protein of u 33.7 63 0.0014 27.3 3.8 46 650-697 7-53 (57)
137 KOG0956 PHD finger protein AF1 33.4 16 0.00035 43.8 0.5 50 646-695 115-181 (900)
138 PLN02189 cellulose synthase 31.1 41 0.00089 42.4 3.4 50 647-696 33-87 (1040)
139 KOG4286 Dystrophin-like protei 31.0 46 0.001 40.6 3.6 58 643-700 598-659 (966)
140 COG0068 HypF Hydrogenase matur 30.5 22 0.00047 43.0 0.9 47 647-693 100-181 (750)
141 PF13717 zinc_ribbon_4: zinc-r 29.9 23 0.0005 26.8 0.7 25 650-674 4-36 (36)
142 KOG3726 Uncharacterized conser 29.0 29 0.00063 41.7 1.6 43 648-693 654-697 (717)
143 PLN02638 cellulose synthase A 27.8 52 0.0011 41.7 3.5 50 647-696 16-70 (1079)
144 PF06844 DUF1244: Protein of u 26.8 38 0.00081 29.5 1.5 11 673-683 12-22 (68)
145 PLN02436 cellulose synthase A 26.4 55 0.0012 41.5 3.3 50 647-696 35-89 (1094)
146 KOG1245 Chromatin remodeling c 26.3 23 0.00051 46.0 0.2 51 644-694 1104-1158(1404)
147 KOG1729 FYVE finger containing 26.2 14 0.00031 40.1 -1.4 40 646-685 212-251 (288)
148 PF04710 Pellino: Pellino; In 25.6 23 0.0005 40.1 0.0 50 647-696 327-401 (416)
149 PF00412 LIM: LIM domain; Int 25.4 29 0.00063 27.5 0.5 9 669-677 18-26 (58)
150 PF07191 zinc-ribbons_6: zinc- 24.8 6.4 0.00014 34.4 -3.5 39 649-695 2-40 (70)
151 KOG4323 Polycomb-like PHD Zn-f 24.3 25 0.00054 40.6 -0.0 47 648-694 168-224 (464)
152 KOG2979 Protein involved in DN 24.2 41 0.00088 36.2 1.5 46 647-694 175-222 (262)
153 PF13719 zinc_ribbon_5: zinc-r 23.6 34 0.00074 25.9 0.6 25 650-674 4-36 (37)
154 PF07649 C1_3: C1-like domain; 23.4 50 0.0011 23.7 1.4 29 650-678 2-30 (30)
155 PF01363 FYVE: FYVE zinc finge 22.8 31 0.00067 28.8 0.2 37 646-682 7-44 (69)
156 PLN02400 cellulose synthase 22.5 54 0.0012 41.5 2.3 50 647-696 35-89 (1085)
157 PLN02248 cellulose synthase-li 22.2 1.1E+02 0.0024 39.1 4.8 34 663-696 144-177 (1135)
158 PF04216 FdhE: Protein involve 22.0 11 0.00024 40.3 -3.2 48 647-694 171-220 (290)
159 smart00064 FYVE Protein presen 20.9 75 0.0016 26.4 2.2 37 647-683 9-46 (68)
160 PF14569 zf-UDP: Zinc-binding 20.8 93 0.002 28.0 2.8 50 647-696 8-62 (80)
161 KOG1814 Predicted E3 ubiquitin 20.4 55 0.0012 37.4 1.6 35 647-681 367-404 (445)
162 cd00065 FYVE FYVE domain; Zinc 20.2 67 0.0015 25.6 1.7 35 649-683 3-38 (57)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.2e-13 Score=148.08 Aligned_cols=69 Identities=30% Similarity=0.834 Sum_probs=54.9
Q ss_pred HHHhhhhcceecccCCCCCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcC-CCCCCcCcCcCCC
Q 005363 629 IKNRLKQQKYSISLGSQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK-NLCPICKTTALST 698 (700)
Q Consensus 629 Iik~Lk~~ky~~~~~~~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~k-nsCPICR~~Ll~t 698 (700)
..+.++..+|+...+.... ..|+||+|+|..++++++|||+|.||..||++||... ..||+||..+.+.
T Consensus 211 ~l~~~p~~~f~~~~~~~~~-~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 211 LLKKLPVRTFTKGDDEDAT-DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred HHhhCCcEEeccccccCCC-ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCC
Confidence 3444666666543322222 6899999999999999999999999999999999976 4599999988765
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.34 E-value=3.5e-13 Score=103.88 Aligned_cols=44 Identities=55% Similarity=1.237 Sum_probs=40.5
Q ss_pred CccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcC
Q 005363 649 EPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICK 692 (700)
Q Consensus 649 ~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR 692 (700)
++|+||+++|..++.+..++|+|.||.+||.+|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 46999999999999999999999999999999999999999997
No 3
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=5.8e-11 Score=124.40 Aligned_cols=51 Identities=31% Similarity=0.911 Sum_probs=47.8
Q ss_pred CCCccccccCccCCCCceEEeccCCcccHHHHHHHHh-cCCCCCCcCcCcCC
Q 005363 647 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM-HKNLCPICKTTALS 697 (700)
Q Consensus 647 ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~-~knsCPICR~~Ll~ 697 (700)
...+|+||+++|...++++.|||.|.||..||.+|+. .++.||+||+++++
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 4478999999999999999999999999999999998 89999999999986
No 4
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.08 E-value=7.3e-11 Score=101.11 Aligned_cols=46 Identities=41% Similarity=0.945 Sum_probs=37.0
Q ss_pred CCCccccccCccCCC----------CceEEeccCCcccHHHHHHHHhcCCCCCCcC
Q 005363 647 EQEPCCICQEEYNDG----------EDTGILHCGHDFHTSCIKQWLMHKNLCPICK 692 (700)
Q Consensus 647 ed~~C~ICLEef~~~----------del~~LpCGHiFH~~CI~qWL~~knsCPICR 692 (700)
.++.|+||++.|.+. -.+...+|||.||..||.+||+.+.+||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 455699999999443 2344558999999999999999999999998
No 5
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.01 E-value=2.3e-10 Score=118.07 Aligned_cols=51 Identities=35% Similarity=0.791 Sum_probs=42.4
Q ss_pred CCCCccccccCccCCCCc----e-EEeccCCcccHHHHHHHHhcCCCCCCcCcCcC
Q 005363 646 QEQEPCCICQEEYNDGED----T-GILHCGHDFHTSCIKQWLMHKNLCPICKTTAL 696 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~de----l-~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll 696 (700)
..+.+|+||++.+.+++. + ..++|+|.||..||.+|++.+.+||+||+.+.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 456889999999876531 2 34489999999999999999999999999865
No 6
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=2.5e-10 Score=122.24 Aligned_cols=52 Identities=33% Similarity=0.898 Sum_probs=44.2
Q ss_pred CCCCCccccccCc-cCCC---------CceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcC
Q 005363 645 QQEQEPCCICQEE-YNDG---------EDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTAL 696 (700)
Q Consensus 645 ~~ed~~C~ICLEe-f~~~---------del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll 696 (700)
..+|..|.||+++ |..+ .+.++|||||+||.+|++.|++++.+|||||.++.
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence 4577899999999 4443 13568999999999999999999999999999843
No 7
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=5.2e-10 Score=116.94 Aligned_cols=51 Identities=29% Similarity=0.735 Sum_probs=46.2
Q ss_pred CCCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcCCC
Q 005363 645 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALST 698 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll~t 698 (700)
...+.+|.||+|...++. .+||||+||+.||..|+..+..||+||....+.
T Consensus 236 ~~a~~kC~LCLe~~~~pS---aTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPS---ATPCGHIFCWSCILEWCSEKAECPLCREKFQPS 286 (293)
T ss_pred CCCCCceEEEecCCCCCC---cCcCcchHHHHHHHHHHccccCCCcccccCCCc
Confidence 345679999999998888 999999999999999999999999999987764
No 8
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.81 E-value=3.1e-09 Score=106.41 Aligned_cols=49 Identities=31% Similarity=0.735 Sum_probs=41.0
Q ss_pred CCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhc----------------CCCCCCcCcCcCC
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH----------------KNLCPICKTTALS 697 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~----------------knsCPICR~~Ll~ 697 (700)
.++.+|+||++.+.++. .++|||.||+.||.+|+.. +..||+||+.+..
T Consensus 16 ~~~~~CpICld~~~dPV---vT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 16 GGDFDCNICLDQVRDPV---VTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CCccCCccCCCcCCCcE---EcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 35678999999987765 7899999999999999852 2469999998854
No 9
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=2.8e-09 Score=108.68 Aligned_cols=51 Identities=31% Similarity=0.662 Sum_probs=42.9
Q ss_pred CCCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhc---CCCCCCcCcCcCCC
Q 005363 645 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH---KNLCPICKTTALST 698 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~---knsCPICR~~Ll~t 698 (700)
.....+|.||++.-+++. .+.|||.||+-||.|||.. ++.||+||..+..+
T Consensus 44 ~~~~FdCNICLd~akdPV---vTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~ 97 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPV---VTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID 97 (230)
T ss_pred CCCceeeeeeccccCCCE---EeecccceehHHHHHHHhhcCCCeeCCccccccccc
Confidence 456678999999987776 8899999999999999984 45699999987653
No 10
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=4.1e-09 Score=103.85 Aligned_cols=53 Identities=28% Similarity=0.590 Sum_probs=44.4
Q ss_pred CCCCCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcC
Q 005363 643 GSQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTAL 696 (700)
Q Consensus 643 ~~~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll 696 (700)
...+....|+|||+.+..... ..++|||+||..||+.-|+....||+|++.|-
T Consensus 126 ~~~~~~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt 178 (187)
T KOG0320|consen 126 LRKEGTYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNKCPTCRKKIT 178 (187)
T ss_pred cccccccCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCCCCCcccccc
Confidence 344556889999999876552 45799999999999999999999999998664
No 11
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.74 E-value=5.5e-09 Score=82.75 Aligned_cols=46 Identities=39% Similarity=0.808 Sum_probs=39.1
Q ss_pred CCccccccCccCCCCceEEeccCCc-ccHHHHHHHHhcCCCCCCcCcCcC
Q 005363 648 QEPCCICQEEYNDGEDTGILHCGHD-FHTSCIKQWLMHKNLCPICKTTAL 696 (700)
Q Consensus 648 d~~C~ICLEef~~~del~~LpCGHi-FH~~CI~qWL~~knsCPICR~~Ll 696 (700)
+..|.||++...+ +..+||||. ||..|+.+|++.+..||+||+++.
T Consensus 2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 5679999998654 558899999 999999999999999999999875
No 12
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.73 E-value=9.8e-09 Score=76.53 Aligned_cols=44 Identities=50% Similarity=1.107 Sum_probs=36.3
Q ss_pred ccccccCccCCCCceEEeccCCcccHHHHHHHHhc-CCCCCCcCcCc
Q 005363 650 PCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH-KNLCPICKTTA 695 (700)
Q Consensus 650 ~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~-knsCPICR~~L 695 (700)
.|+||++.+. +.+..++|+|.||..|++.|++. ...||+||+.+
T Consensus 1 ~C~iC~~~~~--~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR--EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh--CceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999983 33345569999999999999997 77799999864
No 13
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.71 E-value=9.5e-09 Score=77.58 Aligned_cols=39 Identities=38% Similarity=0.994 Sum_probs=33.3
Q ss_pred cccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCc
Q 005363 651 CCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPIC 691 (700)
Q Consensus 651 C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPIC 691 (700)
|+||++.+.++ +..++|||.||..||.+|++.+..||+|
T Consensus 1 C~iC~~~~~~~--~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDP--VVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSE--EEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCc--CEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999998874 3578999999999999999998899998
No 14
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=5.6e-09 Score=119.05 Aligned_cols=51 Identities=39% Similarity=0.948 Sum_probs=45.2
Q ss_pred CCCCccccccCccCCCCc--eEEeccCCcccHHHHHHHHhcCCCCCCcCcCcC
Q 005363 646 QEQEPCCICQEEYNDGED--TGILHCGHDFHTSCIKQWLMHKNLCPICKTTAL 696 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~de--l~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll 696 (700)
..+..|+||+|++..+.+ ..+|+|+|+||..|+++||+++.+||+||..+.
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhh
Confidence 457889999999998754 568999999999999999999999999999543
No 15
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.59 E-value=4.6e-08 Score=79.80 Aligned_cols=46 Identities=24% Similarity=0.429 Sum_probs=41.3
Q ss_pred CccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 649 EPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 649 ~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
..|+||.+.+.++. .++|||+|++.||.+|++.+..||+|+..+..
T Consensus 2 ~~Cpi~~~~~~~Pv---~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDPV---ILPSGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCCE---ECCCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 46999999998875 78999999999999999998899999998743
No 16
>PHA02926 zinc finger-like protein; Provisional
Probab=98.57 E-value=3.4e-08 Score=100.59 Aligned_cols=51 Identities=33% Similarity=0.763 Sum_probs=39.3
Q ss_pred CCCCccccccCccCCCC-----ceEEe-ccCCcccHHHHHHHHhcC------CCCCCcCcCcC
Q 005363 646 QEQEPCCICQEEYNDGE-----DTGIL-HCGHDFHTSCIKQWLMHK------NLCPICKTTAL 696 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~d-----el~~L-pCGHiFH~~CI~qWL~~k------nsCPICR~~Ll 696 (700)
..+.+|.||+|...+.. ..+.| +|+|.||..||.+|.+.+ ..||+||..+.
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 45688999999864421 23455 899999999999999853 45999999764
No 17
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.56 E-value=5e-08 Score=86.27 Aligned_cols=50 Identities=32% Similarity=0.856 Sum_probs=39.1
Q ss_pred CCCccccccCccCC--------CC--ceEEeccCCcccHHHHHHHHhc---CCCCCCcCcCcC
Q 005363 647 EQEPCCICQEEYND--------GE--DTGILHCGHDFHTSCIKQWLMH---KNLCPICKTTAL 696 (700)
Q Consensus 647 ed~~C~ICLEef~~--------~d--el~~LpCGHiFH~~CI~qWL~~---knsCPICR~~Ll 696 (700)
.++.|.||+..|.. ++ .+..-.|+|.||..||.+||.. +..||+||++..
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 47889999999862 22 2333389999999999999985 567999998753
No 18
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.55 E-value=5.4e-08 Score=75.50 Aligned_cols=44 Identities=34% Similarity=0.832 Sum_probs=38.3
Q ss_pred ccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCc
Q 005363 650 PCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKT 693 (700)
Q Consensus 650 ~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~ 693 (700)
.|.||++.|.......+|+|||+||..||.++......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999965666778899999999999999866778999985
No 19
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.52 E-value=5e-08 Score=75.46 Aligned_cols=38 Identities=37% Similarity=0.871 Sum_probs=30.4
Q ss_pred cccccCccCCCCceEEeccCCcccHHHHHHHHhcC----CCCCCc
Q 005363 651 CCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK----NLCPIC 691 (700)
Q Consensus 651 C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~k----nsCPIC 691 (700)
|+||++.|.++. .|+|||.||..||.+|.+.. ..||+|
T Consensus 1 CpiC~~~~~~Pv---~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPV---SLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEE---E-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCcc---ccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999988 99999999999999999844 359998
No 20
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.45 E-value=1e-07 Score=104.97 Aligned_cols=50 Identities=24% Similarity=0.685 Sum_probs=44.0
Q ss_pred CCCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 645 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
.+....|.||++.|..+. .++|||.||..||..|+.....||+||..+..
T Consensus 23 Le~~l~C~IC~d~~~~Pv---itpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVPV---LTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccccCCCcCchhhhCcc---CCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 346678999999998776 78999999999999999988899999998754
No 21
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.45 E-value=9.8e-08 Score=72.15 Aligned_cols=39 Identities=41% Similarity=1.083 Sum_probs=34.0
Q ss_pred cccccCccCCCCceEEeccCCcccHHHHHHHHh--cCCCCCCc
Q 005363 651 CCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM--HKNLCPIC 691 (700)
Q Consensus 651 C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~--~knsCPIC 691 (700)
|.||++.+.++. ..++|||.||.+||.+|++ ....||+|
T Consensus 1 C~iC~~~~~~~~--~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE--EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC--EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999987765 5779999999999999999 45669998
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.43 E-value=1.9e-07 Score=67.18 Aligned_cols=38 Identities=55% Similarity=1.253 Sum_probs=32.4
Q ss_pred cccccCccCCCCceEEeccCCcccHHHHHHHHh-cCCCCCCc
Q 005363 651 CCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM-HKNLCPIC 691 (700)
Q Consensus 651 C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~-~knsCPIC 691 (700)
|+||++.. .....++|+|.||..|++.|++ .+..||+|
T Consensus 1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 78998883 3455889999999999999998 66779998
No 23
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.31 E-value=5e-07 Score=78.88 Aligned_cols=48 Identities=33% Similarity=0.863 Sum_probs=36.5
Q ss_pred CCccccccCccC-----------CCCceEEe--ccCCcccHHHHHHHHhcCCCCCCcCcCc
Q 005363 648 QEPCCICQEEYN-----------DGEDTGIL--HCGHDFHTSCIKQWLMHKNLCPICKTTA 695 (700)
Q Consensus 648 d~~C~ICLEef~-----------~~del~~L--pCGHiFH~~CI~qWL~~knsCPICR~~L 695 (700)
.+.|.||...|. .+++.... .|.|.||..||.+||..++.||+||++.
T Consensus 20 id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w 80 (88)
T COG5194 20 IDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTW 80 (88)
T ss_pred cchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCcee
Confidence 355666665553 34433333 7999999999999999999999999874
No 24
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=3.5e-07 Score=95.12 Aligned_cols=50 Identities=30% Similarity=0.681 Sum_probs=43.4
Q ss_pred CCCCccccccCccCCCCceEEeccCCcccHHHHHH-HHhcCCC-CCCcCcCcCCC
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQ-WLMHKNL-CPICKTTALST 698 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~q-WL~~kns-CPICR~~Ll~t 698 (700)
..+.+|.||++....+. .++|||+||..||.. |-+.+.. ||+||+...+.
T Consensus 213 ~~d~kC~lC~e~~~~ps---~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 213 LADYKCFLCLEEPEVPS---CTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred ccccceeeeecccCCcc---cccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 45788999999987777 999999999999999 9887776 99999977653
No 25
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=8.2e-07 Score=98.47 Aligned_cols=52 Identities=27% Similarity=0.701 Sum_probs=41.2
Q ss_pred CCCCccccccCccCCCC--------------ceEEeccCCcccHHHHHHHHh-cCCCCCCcCcCcCC
Q 005363 646 QEQEPCCICQEEYNDGE--------------DTGILHCGHDFHTSCIKQWLM-HKNLCPICKTTALS 697 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~d--------------el~~LpCGHiFH~~CI~qWL~-~knsCPICR~~Ll~ 697 (700)
.....|+||+.++..-. ....+||.|+||..|+++|+. .|-.||+||.++++
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 45678999998875311 122459999999999999999 67799999999875
No 26
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=9.4e-07 Score=98.76 Aligned_cols=47 Identities=34% Similarity=0.615 Sum_probs=39.6
Q ss_pred CCccccccCccCCCCceEEeccCCcccHHHHHHHHhcC-----CCCCCcCcCcCC
Q 005363 648 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK-----NLCPICKTTALS 697 (700)
Q Consensus 648 d~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~k-----nsCPICR~~Ll~ 697 (700)
+..|+||++....+. .+.|||+||..||.+++... ..||+|+..+..
T Consensus 186 ~~~CPICL~~~~~p~---~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPV---RTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCccc---ccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 678999999987776 67799999999999998744 359999987754
No 27
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.07 E-value=2.6e-06 Score=66.54 Aligned_cols=38 Identities=34% Similarity=0.832 Sum_probs=22.6
Q ss_pred cccccCccCCCC-ceEEeccCCcccHHHHHHHHhcC----CCCC
Q 005363 651 CCICQEEYNDGE-DTGILHCGHDFHTSCIKQWLMHK----NLCP 689 (700)
Q Consensus 651 C~ICLEef~~~d-el~~LpCGHiFH~~CI~qWL~~k----nsCP 689 (700)
|+||+| |.+.+ ....|+|||+||.+||+++++.. ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 76644 35678999999999999999843 3576
No 28
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.05 E-value=1.3e-06 Score=93.29 Aligned_cols=48 Identities=35% Similarity=0.699 Sum_probs=43.6
Q ss_pred CCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcC
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTAL 696 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll 696 (700)
+....|-||.|.|..+. ++||+|.||.-||+.+|..+..||.|+.++-
T Consensus 21 D~lLRC~IC~eyf~ip~---itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~ 68 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIPM---ITPCSHTFCSLCIRKFLSYKPQCPTCCVTVT 68 (442)
T ss_pred HHHHHHhHHHHHhcCce---eccccchHHHHHHHHHhccCCCCCceecccc
Confidence 45567999999999988 8899999999999999999999999998764
No 29
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=1e-06 Score=91.77 Aligned_cols=51 Identities=31% Similarity=0.794 Sum_probs=42.9
Q ss_pred CCCCCccccccCccCCCC-------ceEEeccCCcccHHHHHHHHh--cCCCCCCcCcCc
Q 005363 645 QQEQEPCCICQEEYNDGE-------DTGILHCGHDFHTSCIKQWLM--HKNLCPICKTTA 695 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~~d-------el~~LpCGHiFH~~CI~qWL~--~knsCPICR~~L 695 (700)
..++..|+||-..+...+ ++-.|.|+|+||..||+-|-. .|.+||.||..+
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekV 280 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKV 280 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHh
Confidence 456788999998887655 566889999999999999964 678899999865
No 30
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=1.7e-06 Score=85.79 Aligned_cols=45 Identities=33% Similarity=0.812 Sum_probs=40.0
Q ss_pred CCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCc
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKT 693 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~ 693 (700)
.+...|+||++.|..+ ..++|+|.||..||..++.....||.||.
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 4667899999999999 48999999999999999886667999993
No 31
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.02 E-value=2.4e-06 Score=73.14 Aligned_cols=48 Identities=27% Similarity=0.456 Sum_probs=38.4
Q ss_pred CCCccccccCccCCCCceEEeccCCcccHHHHHHHHhc-CCCCCCcCcCcCC
Q 005363 647 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH-KNLCPICKTTALS 697 (700)
Q Consensus 647 ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~-knsCPICR~~Ll~ 697 (700)
+...|+||.+-+.++. +++|||+|.+.||.+||+. ...||+|+..+..
T Consensus 3 ~~f~CpIt~~lM~dPV---i~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRDPV---ILPSGHTYERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SSEE---EETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhCce---eCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 3467999999999988 8999999999999999998 8899999988754
No 32
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.98 E-value=2.9e-06 Score=89.30 Aligned_cols=47 Identities=28% Similarity=0.670 Sum_probs=42.4
Q ss_pred CCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCc
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 695 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~L 695 (700)
+....|-||-+.|..+. .++|||.||.-||+..|..+..||+||...
T Consensus 23 Ds~lrC~IC~~~i~ip~---~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~ 69 (391)
T COG5432 23 DSMLRCRICDCRISIPC---ETTCGHTFCSLCIRRHLGTQPFCPVCREDP 69 (391)
T ss_pred hhHHHhhhhhheeecce---ecccccchhHHHHHHHhcCCCCCccccccH
Confidence 45567999999998887 889999999999999999999999999864
No 33
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=3.1e-06 Score=73.47 Aligned_cols=50 Identities=36% Similarity=0.942 Sum_probs=37.6
Q ss_pred CCCCccccccCccCC--------CCceEEe--ccCCcccHHHHHHHHhc---CCCCCCcCcCc
Q 005363 646 QEQEPCCICQEEYND--------GEDTGIL--HCGHDFHTSCIKQWLMH---KNLCPICKTTA 695 (700)
Q Consensus 646 ~ed~~C~ICLEef~~--------~del~~L--pCGHiFH~~CI~qWL~~---knsCPICR~~L 695 (700)
..++.|-||.-.|.- +++.-.+ .|.|.||..||.+||.. +..||+||++.
T Consensus 18 ~~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 18 APDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred CCCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 455689999988853 3322222 79999999999999974 45699999864
No 34
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.90 E-value=1.1e-05 Score=64.55 Aligned_cols=42 Identities=31% Similarity=0.820 Sum_probs=32.8
Q ss_pred ccccccCccCCCCceEEeccC-----CcccHHHHHHHHhcC--CCCCCcC
Q 005363 650 PCCICQEEYNDGEDTGILHCG-----HDFHTSCIKQWLMHK--NLCPICK 692 (700)
Q Consensus 650 ~C~ICLEef~~~del~~LpCG-----HiFH~~CI~qWL~~k--nsCPICR 692 (700)
.|.||++ ..++++..++||. |.+|..|+.+|+..+ ..||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4999999 3444445577886 899999999999754 4799996
No 35
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.82 E-value=3.5e-06 Score=72.00 Aligned_cols=49 Identities=27% Similarity=0.683 Sum_probs=23.8
Q ss_pred CCccccccCccCCCC-c--eEEe--ccCCcccHHHHHHHHhc----C-------CCCCCcCcCcC
Q 005363 648 QEPCCICQEEYNDGE-D--TGIL--HCGHDFHTSCIKQWLMH----K-------NLCPICKTTAL 696 (700)
Q Consensus 648 d~~C~ICLEef~~~d-e--l~~L--pCGHiFH~~CI~qWL~~----k-------nsCPICR~~Ll 696 (700)
+.+|.||++.+.+.+ . +..- .|++.||..|+.+||.. + ..||.|+++|.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 457999999876333 2 2222 79999999999999972 1 13999999875
No 36
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.82 E-value=4.6e-06 Score=97.89 Aligned_cols=52 Identities=25% Similarity=0.726 Sum_probs=40.0
Q ss_pred CCCCCccccccCccCCCC----ceEEeccCCcccHHHHHHHHhc--CCCCCCcCcCcC
Q 005363 645 QQEQEPCCICQEEYNDGE----DTGILHCGHDFHTSCIKQWLMH--KNLCPICKTTAL 696 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~~d----el~~LpCGHiFH~~CI~qWL~~--knsCPICR~~Ll 696 (700)
....++|+||+..+..-+ ..++-.|.|.||..|+.+|++. ++.||+||.++.
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 456789999987765211 1345579999999999999994 567999998764
No 37
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=2.5e-05 Score=71.41 Aligned_cols=51 Identities=31% Similarity=0.789 Sum_probs=38.3
Q ss_pred CCCCCCccccccCccCC------------CCceEEe--ccCCcccHHHHHHHHhcCCCCCCcCcC
Q 005363 644 SQQEQEPCCICQEEYND------------GEDTGIL--HCGHDFHTSCIKQWLMHKNLCPICKTT 694 (700)
Q Consensus 644 ~~~ed~~C~ICLEef~~------------~del~~L--pCGHiFH~~CI~qWL~~knsCPICR~~ 694 (700)
-+...+.|+||...+.+ .++.... .|.|.||..||.+||+.++.||+|.+.
T Consensus 42 WDi~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 42 WDIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred eeeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 34566788888755421 2222222 799999999999999999999999875
No 38
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=5.5e-05 Score=81.90 Aligned_cols=49 Identities=31% Similarity=0.674 Sum_probs=41.3
Q ss_pred CCCCccccccCccCCCCceEEeccCCc-ccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCGHD-FHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCGHi-FH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
+...+|.||+.+-++.. +|||-|. .|..|.+..--+.+.|||||.++..
T Consensus 288 ~~gkeCVIClse~rdt~---vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTV---VLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcceE---EecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 44678999998876655 9999998 8999999877778899999998754
No 39
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=4.1e-05 Score=62.84 Aligned_cols=47 Identities=28% Similarity=0.622 Sum_probs=36.9
Q ss_pred CCccccccCccCCCCceEEeccCCc-ccHHHHHHHHh-cCCCCCCcCcCcCC
Q 005363 648 QEPCCICQEEYNDGEDTGILHCGHD-FHTSCIKQWLM-HKNLCPICKTTALS 697 (700)
Q Consensus 648 d~~C~ICLEef~~~del~~LpCGHi-FH~~CI~qWL~-~knsCPICR~~Ll~ 697 (700)
+++|.||+|.-.+.. ...|||. .|.+|-.+.++ .+..||+||+++.+
T Consensus 7 ~dECTICye~pvdsV---lYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 7 SDECTICYEHPVDSV---LYTCGHMCMCYACGLRLKKALHGCCPICRAPIKD 55 (62)
T ss_pred ccceeeeccCcchHH---HHHcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence 478999988866554 6689997 78999655555 78899999998753
No 40
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=5.8e-05 Score=82.19 Aligned_cols=51 Identities=33% Similarity=0.889 Sum_probs=39.4
Q ss_pred CCCCccccccCccCCCC----ceEEe-ccCCcccHHHHHHHHh--c-----CCCCCCcCcCcC
Q 005363 646 QEQEPCCICQEEYNDGE----DTGIL-HCGHDFHTSCIKQWLM--H-----KNLCPICKTTAL 696 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~d----el~~L-pCGHiFH~~CI~qWL~--~-----knsCPICR~~Ll 696 (700)
..+.+|.||+|...+.. ..++| +|.|.||..||.+|-. + ...||+||...-
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 46788999999876654 13344 6999999999999984 3 367999998653
No 41
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.41 E-value=2.9e-05 Score=90.12 Aligned_cols=52 Identities=21% Similarity=0.461 Sum_probs=45.2
Q ss_pred CCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
.....|+||+..+.+.......+|+|+||..||..|-+.-++||+||..+..
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 3456799999999887766667999999999999999999999999997654
No 42
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.27 E-value=8.2e-05 Score=78.96 Aligned_cols=55 Identities=20% Similarity=0.619 Sum_probs=44.6
Q ss_pred CCCCCCCccccccCccCCCCceEEeccCCcccHHHHHHHHh-----------------------cCCCCCCcCcCcCC
Q 005363 643 GSQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM-----------------------HKNLCPICKTTALS 697 (700)
Q Consensus 643 ~~~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~-----------------------~knsCPICR~~Ll~ 697 (700)
+.....-.|.||+--|.+.+....++|-|.||..|+-++|. .+..||+||..|..
T Consensus 110 ~nn~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 110 ENNHPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred cCCCCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 34456678999999999999999999999999999877662 12349999998765
No 43
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.25 E-value=6.8e-05 Score=63.42 Aligned_cols=44 Identities=34% Similarity=0.736 Sum_probs=24.1
Q ss_pred CCccccccCccCCCCceEEe-ccCCcccHHHHHHHHhcCCCCCCcCcCcC
Q 005363 648 QEPCCICQEEYNDGEDTGIL-HCGHDFHTSCIKQWLMHKNLCPICKTTAL 696 (700)
Q Consensus 648 d~~C~ICLEef~~~del~~L-pCGHiFH~~CI~qWL~~knsCPICR~~Ll 696 (700)
...|.+|.+.++.+. .| .|.|+||..||.+-+. ..||+|++++-
T Consensus 7 lLrCs~C~~~l~~pv---~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw 51 (65)
T PF14835_consen 7 LLRCSICFDILKEPV---CLGGCEHIFCSSCIRDCIG--SECPVCHTPAW 51 (65)
T ss_dssp TTS-SSS-S--SS-B------SSS--B-TTTGGGGTT--TB-SSS--B-S
T ss_pred hcCCcHHHHHhcCCc---eeccCccHHHHHHhHHhcC--CCCCCcCChHH
Confidence 457999999998876 54 7999999999988554 34999999863
No 44
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=5.9e-05 Score=81.54 Aligned_cols=51 Identities=29% Similarity=0.481 Sum_probs=40.6
Q ss_pred CCCCCccccccCccCCCCceEEeccCCcccHHHHHHHHh-cCCCCCCcCcCcCC
Q 005363 645 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM-HKNLCPICKTTALS 697 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~-~knsCPICR~~Ll~ 697 (700)
...+..|.|||+-++... ....|.|.||.+||..-|+ ..+.||.||+.+..
T Consensus 40 ~~~~v~c~icl~llk~tm--ttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTM--TTKECLHRFCFDCIWKALRSGNNECPTCRKKLVS 91 (381)
T ss_pred hhhhhccHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccc
Confidence 345678999999886654 2236999999999988887 56789999998754
No 45
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.00012 Score=85.59 Aligned_cols=48 Identities=27% Similarity=0.708 Sum_probs=39.1
Q ss_pred CCCccccccCccCCCCceEEeccCCcccHHHHHHHHh-cCCCCCCcCcCcCC
Q 005363 647 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM-HKNLCPICKTTALS 697 (700)
Q Consensus 647 ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~-~knsCPICR~~Ll~ 697 (700)
....|++|-..+++.. ++.|+|.||..||..-+. +...||.|.+.+-+
T Consensus 642 ~~LkCs~Cn~R~Kd~v---I~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAV---ITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred hceeCCCccCchhhHH---HHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 4568999986655544 889999999999999998 56789999987643
No 46
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.18 E-value=0.00018 Score=79.84 Aligned_cols=50 Identities=28% Similarity=0.782 Sum_probs=40.4
Q ss_pred CCCCccccccCccCCCCc-eEEeccCCcccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 646 QEQEPCCICQEEYNDGED-TGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~de-l~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
.+...|+||+|.+..... +..+.|.|.||-.|+.+| ...+||+||....+
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w--~~~scpvcR~~q~p 223 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW--WDSSCPVCRYCQSP 223 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccccchHHHhhc--ccCcChhhhhhcCc
Confidence 456789999999876653 344589999999999999 45689999987663
No 47
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=97.11 E-value=0.00027 Score=85.90 Aligned_cols=53 Identities=32% Similarity=0.619 Sum_probs=43.6
Q ss_pred CCCCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCC----------CCCCcCcCcC
Q 005363 644 SQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKN----------LCPICKTTAL 696 (700)
Q Consensus 644 ~~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~kn----------sCPICR~~Ll 696 (700)
..+.++.|.||+.+--.....+.|.|+|+||..|.+..|+++- .||+|+.+|.
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 4466788999988876666778999999999999998887553 3999999874
No 48
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.98 E-value=0.00028 Score=77.26 Aligned_cols=46 Identities=37% Similarity=0.810 Sum_probs=37.9
Q ss_pred ccccccCccCCCCceEEeccCCcccHHHHHHHHhc--CCCCCCcCcCcCCC
Q 005363 650 PCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH--KNLCPICKTTALST 698 (700)
Q Consensus 650 ~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~--knsCPICR~~Ll~t 698 (700)
.|-||-|. ..++++-||||..|..|+..|-.. .+.||.||.+|..+
T Consensus 371 LCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 371 LCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 59999765 445668899999999999999753 57899999998765
No 49
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.00062 Score=75.62 Aligned_cols=49 Identities=24% Similarity=0.764 Sum_probs=43.6
Q ss_pred CCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
..+..|.||+..+..+. .++|||.||..||.+-+..+..||.||..+..
T Consensus 82 ~sef~c~vc~~~l~~pv---~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPV---VTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCc---cccccccccHHHHHHHhccCCCCccccccccc
Confidence 56778999999988887 78999999999999988888899999998764
No 50
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.0012 Score=71.61 Aligned_cols=49 Identities=33% Similarity=0.569 Sum_probs=41.6
Q ss_pred CCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
.++..|+||+..-. .....||+|.-|+.||.+.|...+.|=.||+++.+
T Consensus 420 sEd~lCpICyA~pi---~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPI---NAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccc---hhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 57788999966543 34488999999999999999999999999998764
No 51
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.62 E-value=0.00052 Score=73.89 Aligned_cols=48 Identities=29% Similarity=0.661 Sum_probs=41.2
Q ss_pred CCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCc
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 695 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~L 695 (700)
.....|.+|...|.+.. .+.-|-|.||+.||.+.|+..+.||+|...+
T Consensus 13 n~~itC~LC~GYliDAT--TI~eCLHTFCkSCivk~l~~~~~CP~C~i~i 60 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDAT--TITECLHTFCKSCIVKYLEESKYCPTCDIVI 60 (331)
T ss_pred ccceehhhccceeecch--hHHHHHHHHHHHHHHHHHHHhccCCccceec
Confidence 45668999999998876 3447999999999999999999999998755
No 52
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.50 E-value=0.0013 Score=54.45 Aligned_cols=43 Identities=26% Similarity=0.564 Sum_probs=29.0
Q ss_pred CCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhc--CCCCCC
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH--KNLCPI 690 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~--knsCPI 690 (700)
.....|+|.+..|+++. +...|+|+|-++.|.+||.. ...||+
T Consensus 9 ~~~~~CPiT~~~~~~PV--~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPV--KSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEE--EESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCCc--CcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 45678999999998876 44589999999999999943 345999
No 53
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.48 E-value=0.0012 Score=73.16 Aligned_cols=51 Identities=29% Similarity=0.661 Sum_probs=43.8
Q ss_pred CCCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 645 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
.+.+..|+||...+.++... +.|||.||..||..|+..+..||.|+..+..
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~--~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~ 68 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQT--TTCGHRFCAGCLLESLSNHQKCPVCRQELTQ 68 (391)
T ss_pred CcccccCccccccccCCCCC--CCCCCcccccccchhhccCcCCcccccccch
Confidence 35678899999999888722 5899999999999999999999999887653
No 54
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.0026 Score=67.25 Aligned_cols=50 Identities=24% Similarity=0.480 Sum_probs=40.6
Q ss_pred CCCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcC--CCCCCcCcCcC
Q 005363 645 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK--NLCPICKTTAL 696 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~k--nsCPICR~~Ll 696 (700)
...+.+|++|.+.-..+. ...+|+|+||+.||..=+... .+||.|-.+..
T Consensus 236 ~t~~~~C~~Cg~~PtiP~--~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPH--VIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCCCe--eeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 456778999999987777 345799999999998876643 68999998765
No 55
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.29 E-value=0.0014 Score=71.91 Aligned_cols=47 Identities=30% Similarity=0.668 Sum_probs=38.8
Q ss_pred CCCccccccCccCCC-CceEEeccCCcccHHHHHHHHhcC--CCCCCcCc
Q 005363 647 EQEPCCICQEEYNDG-EDTGILHCGHDFHTSCIKQWLMHK--NLCPICKT 693 (700)
Q Consensus 647 ed~~C~ICLEef~~~-del~~LpCGHiFH~~CI~qWL~~k--nsCPICR~ 693 (700)
-+..|..|=|.+... +.+..|||.|+||..|+...|+.+ .+||-||+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 345799999988654 457788999999999999999865 46999995
No 56
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.19 E-value=0.0024 Score=64.82 Aligned_cols=45 Identities=24% Similarity=0.673 Sum_probs=39.9
Q ss_pred CCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCc
Q 005363 648 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 695 (700)
Q Consensus 648 d~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~L 695 (700)
-..|.||.++|..+. .+.|||.||..|.-.-++....|-+|-+..
T Consensus 196 PF~C~iCKkdy~spv---vt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 196 PFLCGICKKDYESPV---VTECGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred ceeehhchhhccchh---hhhcchhHHHHHHHHHhccCCcceecchhh
Confidence 357999999999988 889999999999988888888999998754
No 57
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.17 E-value=0.003 Score=74.75 Aligned_cols=45 Identities=22% Similarity=0.613 Sum_probs=36.0
Q ss_pred CCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCc
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 695 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~L 695 (700)
....+|.+|--.+..+. +...|||.||.+|+. .....||-|+..+
T Consensus 838 ~q~skCs~C~~~LdlP~--VhF~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 838 FQVSKCSACEGTLDLPF--VHFLCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeeeeecccCCccccce--eeeecccHHHHHhhc---cCcccCCccchhh
Confidence 45578999988877765 456899999999998 4567899999743
No 58
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.0032 Score=67.18 Aligned_cols=47 Identities=21% Similarity=0.528 Sum_probs=41.6
Q ss_pred CCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 648 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 648 d~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
-..|-||..+|..+. .+.|+|.||..|...-++....|.+|-+.+-.
T Consensus 241 Pf~c~icr~~f~~pV---vt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPV---VTKCGHYFCEVCALKPYQKGEKCYVCSQQTHG 287 (313)
T ss_pred Cccccccccccccch---hhcCCceeehhhhccccccCCcceeccccccc
Confidence 456999999999998 89999999999999988888999999886543
No 59
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.0026 Score=67.75 Aligned_cols=42 Identities=38% Similarity=0.794 Sum_probs=32.4
Q ss_pred CCccccccCccCCCCceEEeccCCc-ccHHHHHHHHhcCCCCCCcCcCcC
Q 005363 648 QEPCCICQEEYNDGEDTGILHCGHD-FHTSCIKQWLMHKNLCPICKTTAL 696 (700)
Q Consensus 648 d~~C~ICLEef~~~del~~LpCGHi-FH~~CI~qWL~~knsCPICR~~Ll 696 (700)
...|.||++...+.. .|+|||. -|.+|-+. -+.|||||+-+.
T Consensus 300 ~~LC~ICmDaP~DCv---fLeCGHmVtCt~CGkr----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCV---FLECGHMVTCTKCGKR----MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcceE---EeecCcEEeehhhccc----cccCchHHHHHH
Confidence 678999988765554 9999997 48888754 348999998653
No 60
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.91 E-value=0.0035 Score=70.96 Aligned_cols=50 Identities=24% Similarity=0.613 Sum_probs=39.4
Q ss_pred CCCCCCccccccCccCCCCceEEeccCCcccHHHHHHHHh-----cCCCCCCcCcCcC
Q 005363 644 SQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM-----HKNLCPICKTTAL 696 (700)
Q Consensus 644 ~~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~-----~knsCPICR~~Ll 696 (700)
....+..|-+|-+.-++.. ...|.|.||+-||++++. ..-+||+|-..+.
T Consensus 532 enk~~~~C~lc~d~aed~i---~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPAEDYI---ESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred cccCceeecccCChhhhhH---hhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 3456678999988765544 778999999999999986 3357999987764
No 61
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.90 E-value=0.0067 Score=63.39 Aligned_cols=51 Identities=12% Similarity=0.345 Sum_probs=45.9
Q ss_pred CCCccccccCccCCCCceEEe-ccCCcccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 647 EQEPCCICQEEYNDGEDTGIL-HCGHDFHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 647 ed~~C~ICLEef~~~del~~L-pCGHiFH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
....|+||.+.+.+...+..| +|||+|+++|+.+.+.....||+|-.++.+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKD 271 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcc
Confidence 345799999999999888888 899999999999999999999999998765
No 62
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.0084 Score=66.44 Aligned_cols=47 Identities=34% Similarity=0.602 Sum_probs=38.2
Q ss_pred CCccccccCccCCCCceEEeccCCcccHHHHHHHHhcC--------CCCCCcCcC
Q 005363 648 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK--------NLCPICKTT 694 (700)
Q Consensus 648 d~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~k--------nsCPICR~~ 694 (700)
...|.||+++..-.+....|||+|+||..|++.++... -.||-|+..
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 34699999998777888889999999999999998622 248877653
No 63
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.24 E-value=0.0091 Score=71.27 Aligned_cols=36 Identities=25% Similarity=0.573 Sum_probs=28.0
Q ss_pred CCCCccccccCccCCCCceEEeccCCcccHHHHHHHH
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWL 682 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL 682 (700)
+..+.|.+|...+.... -...+|||.||++||.+-.
T Consensus 815 ep~d~C~~C~~~ll~~p-F~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIKP-FYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred cCccchHHhcchhhcCc-ceeeeccchHHHHHHHHHH
Confidence 56778999988775543 3355999999999997765
No 64
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.019 Score=59.49 Aligned_cols=52 Identities=25% Similarity=0.593 Sum_probs=41.9
Q ss_pred CCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhc--------CCCCCCcCcCcCCC
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH--------KNLCPICKTTALST 698 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~--------knsCPICR~~Ll~t 698 (700)
+....|..|-..+..++ ...|-|-|+||++|+.+|-.. ...||-|..+|.+.
T Consensus 48 DY~pNC~LC~t~La~gd-t~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp 107 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGD-TTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPP 107 (299)
T ss_pred CCCCCCceeCCccccCc-ceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCC
Confidence 44567999999988887 447789999999999999752 23599999998763
No 65
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=94.81 E-value=0.027 Score=55.64 Aligned_cols=49 Identities=24% Similarity=0.647 Sum_probs=35.3
Q ss_pred CCCCCCccccccCccCCCCceEEeccC--C---cccHHHHHHHHhcC--CCCCCcCcCcC
Q 005363 644 SQQEQEPCCICQEEYNDGEDTGILHCG--H---DFHTSCIKQWLMHK--NLCPICKTTAL 696 (700)
Q Consensus 644 ~~~ed~~C~ICLEef~~~del~~LpCG--H---iFH~~CI~qWL~~k--nsCPICR~~Ll 696 (700)
....+..|-||.++.. +. .-||. . .-|.+|+.+|+..+ ..|++|+++..
T Consensus 4 ~s~~~~~CRIC~~~~~--~~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 4 VSLMDKCCWICKDEYD--VV--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred cCCCCCeeEecCCCCC--Cc--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 3456778999998853 22 23555 4 45999999999854 56999998753
No 66
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.78 E-value=0.02 Score=62.26 Aligned_cols=50 Identities=26% Similarity=0.657 Sum_probs=38.8
Q ss_pred CCCCCCCccccccCccCCCCceEEeccCCcccHHHHHHH--HhcCCCCCCcCcCc
Q 005363 643 GSQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQW--LMHKNLCPICKTTA 695 (700)
Q Consensus 643 ~~~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qW--L~~knsCPICR~~L 695 (700)
+.+++...|.||.+.+.- ...+||+|..|-.|..+. |-.++.||+||++-
T Consensus 56 dtDEen~~C~ICA~~~TY---s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 56 DTDEENMNCQICAGSTTY---SARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred ccccccceeEEecCCceE---EEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 455667789999887543 337899999999998654 44788899999863
No 67
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=94.68 E-value=0.014 Score=52.10 Aligned_cols=33 Identities=33% Similarity=0.744 Sum_probs=27.0
Q ss_pred CCCCccccccCccCCCCceEEeccCCcccHHHHH
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIK 679 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~ 679 (700)
.++..|.+|...+.. ......||||+||..|++
T Consensus 76 ~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 456679999999877 445666999999999985
No 68
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=94.60 E-value=0.021 Score=54.99 Aligned_cols=36 Identities=22% Similarity=0.534 Sum_probs=29.8
Q ss_pred CCccccccCccCCCCceEEeccC------CcccHHHHHHHHh
Q 005363 648 QEPCCICQEEYNDGEDTGILHCG------HDFHTSCIKQWLM 683 (700)
Q Consensus 648 d~~C~ICLEef~~~del~~LpCG------HiFH~~CI~qWL~ 683 (700)
..+|.||++.+.+.+-++.++|+ |.||.+|+++|-.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 56799999999885556677777 8899999999944
No 69
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=0.018 Score=62.96 Aligned_cols=44 Identities=25% Similarity=0.671 Sum_probs=31.7
Q ss_pred CCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCc
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 695 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~L 695 (700)
.....|.||+++..+.+ .++|||.-| |+.-- +.-..||+||..|
T Consensus 303 ~~p~lcVVcl~e~~~~~---fvpcGh~cc--ct~cs-~~l~~CPvCR~rI 346 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKSAV---FVPCGHVCC--CTLCS-KHLPQCPVCRQRI 346 (355)
T ss_pred CCCCceEEecCCcccee---eecCCcEEE--chHHH-hhCCCCchhHHHH
Confidence 34567999999977744 899999876 65443 2233499999865
No 70
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.49 E-value=0.04 Score=58.05 Aligned_cols=52 Identities=21% Similarity=0.462 Sum_probs=41.3
Q ss_pred CCCCCccccccCccCCCCceEEe-ccCCcccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 645 QQEQEPCCICQEEYNDGEDTGIL-HCGHDFHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~~del~~L-pCGHiFH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
......|+|+..+|......+.| +|||+|...||++. .....||+|-.++..
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTE 162 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCcccc
Confidence 34567899999999666666666 99999999999997 235579999988653
No 71
>PHA02862 5L protein; Provisional
Probab=94.48 E-value=0.027 Score=54.88 Aligned_cols=47 Identities=26% Similarity=0.688 Sum_probs=32.8
Q ss_pred CCccccccCccCCCCceEEecc---CCcccHHHHHHHHh--cCCCCCCcCcCcC
Q 005363 648 QEPCCICQEEYNDGEDTGILHC---GHDFHTSCIKQWLM--HKNLCPICKTTAL 696 (700)
Q Consensus 648 d~~C~ICLEef~~~del~~LpC---GHiFH~~CI~qWL~--~knsCPICR~~Ll 696 (700)
.+.|-||+++-.+. ...-.| -..-|.+|+.+|+. ++..|++|+++..
T Consensus 2 ~diCWIC~~~~~e~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 2 SDICWICNDVCDER--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CCEEEEecCcCCCC--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 35799999985332 211123 24679999999998 4567999998753
No 72
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=94.45 E-value=0.02 Score=45.51 Aligned_cols=40 Identities=35% Similarity=0.816 Sum_probs=27.1
Q ss_pred cccccCccCCCCceEEeccC--C---cccHHHHHHHHh--cCCCCCCc
Q 005363 651 CCICQEEYNDGEDTGILHCG--H---DFHTSCIKQWLM--HKNLCPIC 691 (700)
Q Consensus 651 C~ICLEef~~~del~~LpCG--H---iFH~~CI~qWL~--~knsCPIC 691 (700)
|-||++.-.+.. ..+.||. = ..|.+|+.+|+. .+..|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 789998876665 2244665 3 679999999998 44669988
No 73
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.10 E-value=0.032 Score=56.07 Aligned_cols=52 Identities=31% Similarity=0.709 Sum_probs=36.2
Q ss_pred CCCCCccccccCccCCCCc----eEEeccCCcccHHHHHHHHhcC-----------CCCCCcCcCcC
Q 005363 645 QQEQEPCCICQEEYNDGED----TGILHCGHDFHTSCIKQWLMHK-----------NLCPICKTTAL 696 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~~de----l~~LpCGHiFH~~CI~qWL~~k-----------nsCPICR~~Ll 696 (700)
.++...|.||+..--++.. .--..||.-||.-|+..||+.- ..||.|-+++.
T Consensus 162 dd~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 162 DDELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred chhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 3445568888765544431 1134899999999999999722 13999998874
No 74
>PHA03096 p28-like protein; Provisional
Probab=94.00 E-value=0.027 Score=60.34 Aligned_cols=45 Identities=31% Similarity=0.593 Sum_probs=32.4
Q ss_pred CccccccCccCCCC----ceEEe-ccCCcccHHHHHHHHhcC---CCCCCcCc
Q 005363 649 EPCCICQEEYNDGE----DTGIL-HCGHDFHTSCIKQWLMHK---NLCPICKT 693 (700)
Q Consensus 649 ~~C~ICLEef~~~d----el~~L-pCGHiFH~~CI~qWL~~k---nsCPICR~ 693 (700)
..|.||+|...... .-+.| .|.|.||..||..|-..+ .+||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 67999999876532 33455 699999999999998633 33555443
No 75
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=93.99 E-value=0.039 Score=44.56 Aligned_cols=45 Identities=27% Similarity=0.625 Sum_probs=23.2
Q ss_pred cccccCccCCCC-ceEEeccCCcccHHHHHHHHh-cCCCCCCcCcCc
Q 005363 651 CCICQEEYNDGE-DTGILHCGHDFHTSCIKQWLM-HKNLCPICKTTA 695 (700)
Q Consensus 651 C~ICLEef~~~d-el~~LpCGHiFH~~CI~qWL~-~knsCPICR~~L 695 (700)
|++|.+++...+ .+.--+|++.+|..|..+-++ ....||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999994433 233337999999999988886 477899999874
No 76
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.92 E-value=0.0041 Score=68.31 Aligned_cols=50 Identities=24% Similarity=0.548 Sum_probs=44.0
Q ss_pred CCCccccccCccCCC-CceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcC
Q 005363 647 EQEPCCICQEEYNDG-EDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTAL 696 (700)
Q Consensus 647 ed~~C~ICLEef~~~-del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll 696 (700)
-...|+||.+.|+.. +++..+-|||.+|..||.+||..+..||.|+.++.
T Consensus 195 lv~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~ 245 (465)
T KOG0827|consen 195 LVGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELP 245 (465)
T ss_pred HHhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhh
Confidence 356799999999877 56777889999999999999999999999998875
No 77
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=93.82 E-value=0.051 Score=64.88 Aligned_cols=49 Identities=31% Similarity=0.690 Sum_probs=36.0
Q ss_pred CCCccccccCccCCCCceEE-eccCCcccHHHHHHHHhcC-------CCCCCcCcCc
Q 005363 647 EQEPCCICQEEYNDGEDTGI-LHCGHDFHTSCIKQWLMHK-------NLCPICKTTA 695 (700)
Q Consensus 647 ed~~C~ICLEef~~~del~~-LpCGHiFH~~CI~qWL~~k-------nsCPICR~~L 695 (700)
...+|.||++.+.....+-. -.|-|+||..||++|-+.. ..||.|....
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 44579999999877663322 2588999999999998631 1399999543
No 78
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.67 E-value=0.02 Score=56.65 Aligned_cols=30 Identities=27% Similarity=0.656 Sum_probs=27.2
Q ss_pred CCCCccccccCccCCCCceEEeccCCcccH
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCGHDFHT 675 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCGHiFH~ 675 (700)
++.-+|.||+|++..++.+..|||-.+||+
T Consensus 175 ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 455689999999999999999999999996
No 79
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=93.38 E-value=0.032 Score=60.08 Aligned_cols=46 Identities=20% Similarity=0.508 Sum_probs=31.3
Q ss_pred CCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 648 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 648 d~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
...|.-|=-.+ ...-+.++|+|+||++|..- ...+.||.|-..+..
T Consensus 90 VHfCd~Cd~PI--~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 90 VHFCDRCDFPI--AIYGRMIPCKHVFCLECARS--DSDKICPLCDDRVQR 135 (389)
T ss_pred eEeecccCCcc--eeeecccccchhhhhhhhhc--CccccCcCcccHHHH
Confidence 34566674333 33335669999999999754 456789999876643
No 80
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.37 E-value=0.044 Score=58.77 Aligned_cols=42 Identities=29% Similarity=0.630 Sum_probs=34.9
Q ss_pred CccccccCccCCCCceEEe-ccCCcccHHHHHHHHh-cCCCCCCcCc
Q 005363 649 EPCCICQEEYNDGEDTGIL-HCGHDFHTSCIKQWLM-HKNLCPICKT 693 (700)
Q Consensus 649 ~~C~ICLEef~~~del~~L-pCGHiFH~~CI~qWL~-~knsCPICR~ 693 (700)
..|+.|..-+..+. .+ -|+|.||.+||..-|. ....||.|-.
T Consensus 275 LkCplc~~Llrnp~---kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPM---KTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcc---cCccccchHHHHHHhhhhhhccccCCCccc
Confidence 78999988887777 44 4999999999987765 6678999976
No 81
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=93.10 E-value=0.091 Score=57.12 Aligned_cols=49 Identities=20% Similarity=0.463 Sum_probs=40.0
Q ss_pred CCCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCc
Q 005363 645 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 695 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~L 695 (700)
..+...|+||+....++. ...--|-+||+.||.+.+...+.||+--.++
T Consensus 297 ~~~~~~CpvClk~r~Npt--vl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPT--VLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CCccccChhHHhccCCCc--eEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 345678999999887776 2335799999999999999999999976654
No 82
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=92.90 E-value=0.052 Score=43.77 Aligned_cols=44 Identities=23% Similarity=0.670 Sum_probs=26.4
Q ss_pred ccccccCccCCCCceEEeccC-CcccHHHHHHHHhcCCCCCCcCcCcCCC
Q 005363 650 PCCICQEEYNDGEDTGILHCG-HDFHTSCIKQWLMHKNLCPICKTTALST 698 (700)
Q Consensus 650 ~C~ICLEef~~~del~~LpCG-HiFH~~CI~qWL~~knsCPICR~~Ll~t 698 (700)
.|--|. |.+.. ...|. |..|..|+.-.|.....||+|++++++.
T Consensus 4 nCKsCW--f~~k~---Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 4 NCKSCW--FANKG---LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp ---SS---S--SS---EEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred cChhhh--hcCCC---eeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 355565 33333 56787 9999999999999999999999998763
No 83
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.58 E-value=0.049 Score=64.65 Aligned_cols=44 Identities=32% Similarity=0.760 Sum_probs=35.4
Q ss_pred CccccccCccCCCCceEEeccCCcccHHHHHHHHhcC--CCCCCcCcCcC
Q 005363 649 EPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK--NLCPICKTTAL 696 (700)
Q Consensus 649 ~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~k--nsCPICR~~Ll 696 (700)
..|.||++ .+...+..|+|.||..|+.+-+... ..||+||..+.
T Consensus 455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 78999999 3445588999999999999988743 35999997553
No 84
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=92.57 E-value=0.045 Score=58.49 Aligned_cols=45 Identities=36% Similarity=0.803 Sum_probs=38.7
Q ss_pred CccccccCccCCCC-ceEEeccCCcccHHHHHHHHhcCCCCCCcCc
Q 005363 649 EPCCICQEEYNDGE-DTGILHCGHDFHTSCIKQWLMHKNLCPICKT 693 (700)
Q Consensus 649 ~~C~ICLEef~~~d-el~~LpCGHiFH~~CI~qWL~~knsCPICR~ 693 (700)
..|+||.+.+.... .+..++|||..|..|........-.||+|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 34999999987765 4567799999999999998887788999998
No 85
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=92.19 E-value=0.079 Score=43.90 Aligned_cols=48 Identities=29% Similarity=0.628 Sum_probs=35.7
Q ss_pred CCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcCCCC
Q 005363 647 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALSTS 699 (700)
Q Consensus 647 ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll~tS 699 (700)
....|..|...-..+. .++|||+.|..|..- ++-+-||+|-+++...+
T Consensus 6 ~~~~~~~~~~~~~~~~---~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGT---VLPCGHLICDNCFPG--ERYNGCPFCGTPFEFDD 53 (55)
T ss_pred cceeEEEccccccccc---cccccceeeccccCh--hhccCCCCCCCcccCCC
Confidence 4556777866544444 889999999999654 46677999999887653
No 86
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=92.14 E-value=0.095 Score=62.29 Aligned_cols=50 Identities=22% Similarity=0.603 Sum_probs=37.3
Q ss_pred CCCCccccccCccCCCCceEEeccCC-----cccHHHHHHHHh--cCCCCCCcCcCcC
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCGH-----DFHTSCIKQWLM--HKNLCPICKTTAL 696 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCGH-----iFH~~CI~qWL~--~knsCPICR~~Ll 696 (700)
+++..|.||..+-..++.+ .-||+. ..|.+|+.+|+. .+..|-+|+.++.
T Consensus 10 ~d~~~CRICr~e~~~d~pL-fhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPL-FHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred ccchhceeecCCCCCCCcC-cccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 4557899999886666532 236764 479999999998 4556999998753
No 87
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=91.94 E-value=0.11 Score=56.55 Aligned_cols=53 Identities=19% Similarity=0.403 Sum_probs=37.0
Q ss_pred CCCCCccccccCccCCCCc-eEEeccCCcccHHHHHHHHh-cCCCCCCcCcCcCC
Q 005363 645 QQEQEPCCICQEEYNDGED-TGILHCGHDFHTSCIKQWLM-HKNLCPICKTTALS 697 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~~de-l~~LpCGHiFH~~CI~qWL~-~knsCPICR~~Ll~ 697 (700)
.++++.|+.|+|++...++ ..-.+||-..|.-|....-+ .+..||.||...-+
T Consensus 11 edeed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 11 EDEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred ccccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence 3455669999999988774 33448998877777544322 35579999987544
No 88
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=90.56 E-value=0.16 Score=54.97 Aligned_cols=45 Identities=27% Similarity=0.575 Sum_probs=36.3
Q ss_pred CCCCccccccCccCCCCceEEecc--CCcccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHC--GHDFHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpC--GHiFH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
.+-.+|+||.+.+..+ +.+| ||+-|..|-. +..+.||.||.++..
T Consensus 46 ~~lleCPvC~~~l~~P----i~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPP----IFQCDNGHLACSSCRT---KVSNKCPTCRLPIGN 92 (299)
T ss_pred hhhccCchhhccCccc----ceecCCCcEehhhhhh---hhcccCCcccccccc
Confidence 4567899999998777 4566 6999999975 467889999998864
No 89
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=89.88 E-value=0.17 Score=39.63 Aligned_cols=41 Identities=29% Similarity=0.814 Sum_probs=24.2
Q ss_pred cccccCccCCCCceEEeccCCcccHHHHHHHHhcCC--CCCCc
Q 005363 651 CCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKN--LCPIC 691 (700)
Q Consensus 651 C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~kn--sCPIC 691 (700)
|.+|.+-...+..-....|+=.+|..|+..+++.+. .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 678888877776333335999999999999998665 69988
No 90
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=89.80 E-value=0.1 Score=64.75 Aligned_cols=44 Identities=36% Similarity=0.835 Sum_probs=37.5
Q ss_pred CCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCc
Q 005363 648 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKT 693 (700)
Q Consensus 648 d~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~ 693 (700)
...|.||++.+..-. .+..|||.||..|+..|+..+..||+|+.
T Consensus 1153 ~~~c~ic~dil~~~~--~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQG--GIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred ccchHHHHHHHHhcC--CeeeechhHhhhHHHHHHHHhccCcchhh
Confidence 347999999887322 27789999999999999999999999984
No 91
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=89.28 E-value=0.13 Score=53.81 Aligned_cols=48 Identities=27% Similarity=0.603 Sum_probs=36.7
Q ss_pred CCCCccccccCccCCCCceEEe--c-cCCcccHHHHHHHHhcC-CCCC--CcCc
Q 005363 646 QEQEPCCICQEEYNDGEDTGIL--H-CGHDFHTSCIKQWLMHK-NLCP--ICKT 693 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~L--p-CGHiFH~~CI~qWL~~k-nsCP--ICR~ 693 (700)
..+..|+||..+.-...++..| | |-|.+|..|+++.|... ..|| -|.+
T Consensus 8 ~~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 8 MEDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hhcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 3566899999876555555555 5 99999999999999854 5699 6654
No 92
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=89.13 E-value=0.55 Score=52.12 Aligned_cols=27 Identities=22% Similarity=0.827 Sum_probs=21.1
Q ss_pred cCCcccHHHHHHHHhcC-------------CCCCCcCcCc
Q 005363 669 CGHDFHTSCIKQWLMHK-------------NLCPICKTTA 695 (700)
Q Consensus 669 CGHiFH~~CI~qWL~~k-------------nsCPICR~~L 695 (700)
|--.+|.+|+-+|+..+ -.||+||+..
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 55678999999998632 3499999974
No 93
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=88.14 E-value=0.52 Score=45.60 Aligned_cols=50 Identities=30% Similarity=0.650 Sum_probs=38.7
Q ss_pred CCCccccccCccCCCCceEEe----ccCCcccHHHHHHHHhc---CCCCCCcCcCcCCCC
Q 005363 647 EQEPCCICQEEYNDGEDTGIL----HCGHDFHTSCIKQWLMH---KNLCPICKTTALSTS 699 (700)
Q Consensus 647 ed~~C~ICLEef~~~del~~L----pCGHiFH~~CI~qWL~~---knsCPICR~~Ll~tS 699 (700)
...+|.||.|.-.+.. .| =||-..|..|.-+..+. ...||+||+....++
T Consensus 79 ~lYeCnIC~etS~ee~---FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEER---FLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchhh---cCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 6678999999876654 44 29999999998776663 456999999887654
No 94
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.98 E-value=0.16 Score=59.28 Aligned_cols=44 Identities=25% Similarity=0.510 Sum_probs=32.4
Q ss_pred CCCccccccCccCCCC-ceEEeccCCcccHHHHHHHHhcCCCCCCcCc
Q 005363 647 EQEPCCICQEEYNDGE-DTGILHCGHDFHTSCIKQWLMHKNLCPICKT 693 (700)
Q Consensus 647 ed~~C~ICLEef~~~d-el~~LpCGHiFH~~CI~qWL~~knsCPICR~ 693 (700)
+...|.||+..|.... ..+.|.|||+.|.+|+... .+.+|| |+.
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp-~~~ 54 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP-TKR 54 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC-CCc
Confidence 3456999988776544 4557799999999999774 456677 554
No 95
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=86.98 E-value=0.35 Score=50.87 Aligned_cols=49 Identities=31% Similarity=0.676 Sum_probs=35.9
Q ss_pred CCccccccCccCCCCc-eEEeccC-----CcccHHHHHHHHh--cCCCCCCcCcCcC
Q 005363 648 QEPCCICQEEYNDGED-TGILHCG-----HDFHTSCIKQWLM--HKNLCPICKTTAL 696 (700)
Q Consensus 648 d~~C~ICLEef~~~de-l~~LpCG-----HiFH~~CI~qWL~--~knsCPICR~~Ll 696 (700)
...|.||.++...... ....+|. +..|..|+..|+. .+..|.+|.....
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 5689999997654432 2344665 5579999999998 5567999998653
No 96
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.92 E-value=0.36 Score=51.13 Aligned_cols=54 Identities=28% Similarity=0.642 Sum_probs=36.1
Q ss_pred CCCCCCCccccccCccCCCCceEEe-ccC-----CcccHHHHHHHHhcCC--------CCCCcCcCcC
Q 005363 643 GSQQEQEPCCICQEEYNDGEDTGIL-HCG-----HDFHTSCIKQWLMHKN--------LCPICKTTAL 696 (700)
Q Consensus 643 ~~~~ed~~C~ICLEef~~~del~~L-pCG-----HiFH~~CI~qWL~~kn--------sCPICR~~Ll 696 (700)
+..+.+..|-||+..=++.-...-. ||- |..|..|+..|+..|. .||.|+++..
T Consensus 15 ~~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 15 DNQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred CccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 3445667788997764333211111 554 7899999999997553 3999998753
No 97
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=85.11 E-value=0.51 Score=56.36 Aligned_cols=51 Identities=16% Similarity=0.259 Sum_probs=37.1
Q ss_pred CCCCccccccCccCCCCc-eEEec---cCCcccHHHHHHHHh------cCCCCCCcCcCcC
Q 005363 646 QEQEPCCICQEEYNDGED-TGILH---CGHDFHTSCIKQWLM------HKNLCPICKTTAL 696 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~de-l~~Lp---CGHiFH~~CI~qWL~------~knsCPICR~~Ll 696 (700)
.+...|.||.-++..+++ ...++ |+|.||..||..|+. .+-.|++|...+.
T Consensus 94 a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 94 AESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred ccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 345678888888877443 23444 999999999999985 2234899988664
No 98
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=84.11 E-value=0.54 Score=55.91 Aligned_cols=26 Identities=38% Similarity=0.825 Sum_probs=23.6
Q ss_pred EEeccCCcccHHHHHHHHhcCCCCCC
Q 005363 665 GILHCGHDFHTSCIKQWLMHKNLCPI 690 (700)
Q Consensus 665 ~~LpCGHiFH~~CI~qWL~~knsCPI 690 (700)
.+..|+|+.|..|.+.|++....||.
T Consensus 1044 ~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1044 FCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hhccccccccHHHHHHHHhcCCcCCC
Confidence 35689999999999999999999985
No 99
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=83.83 E-value=0.29 Score=57.91 Aligned_cols=46 Identities=28% Similarity=0.689 Sum_probs=37.8
Q ss_pred CCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCC---CCCCcCcCc
Q 005363 647 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKN---LCPICKTTA 695 (700)
Q Consensus 647 ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~kn---sCPICR~~L 695 (700)
...+|.||.+.|..+. .++|-|.||..|+..-|..++ .||+|+..+
T Consensus 20 k~lEc~ic~~~~~~p~---~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~ 68 (684)
T KOG4362|consen 20 KILECPICLEHVKEPS---LLKCDHIFLKFCLNKLFESKKGPKQCALCKSDI 68 (684)
T ss_pred hhccCCceeEEeeccc---hhhhhHHHHhhhhhceeeccCccccchhhhhhh
Confidence 4467999999999885 889999999999877776544 599999644
No 100
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.66 E-value=0.49 Score=52.83 Aligned_cols=40 Identities=35% Similarity=0.696 Sum_probs=30.3
Q ss_pred CCCCccccccCccCCC-CceEEeccCCcccHHHHHHHHhcC
Q 005363 646 QEQEPCCICQEEYNDG-EDTGILHCGHDFHTSCIKQWLMHK 685 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~-del~~LpCGHiFH~~CI~qWL~~k 685 (700)
.....|.||..++... .....+.|+|.||.+|+++.++.+
T Consensus 144 ~~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 144 LPKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVK 184 (384)
T ss_pred cccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhh
Confidence 3567899999555444 333356899999999999999855
No 101
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.58 E-value=0.81 Score=51.09 Aligned_cols=49 Identities=22% Similarity=0.441 Sum_probs=39.6
Q ss_pred CCccccccCccCCCCceEEeccCCcccHHHHHHHHhcC---CCCCCcCcCcC
Q 005363 648 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK---NLCPICKTTAL 696 (700)
Q Consensus 648 d~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~k---nsCPICR~~Ll 696 (700)
...|+|=.+.-.+......|.|||+.+.+-|.+..+.. ..||+|=....
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~ 385 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQL 385 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccC
Confidence 45799988888777778899999999999999987633 57999966543
No 102
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.58 E-value=0.6 Score=48.10 Aligned_cols=39 Identities=28% Similarity=0.682 Sum_probs=28.8
Q ss_pred cccccCccCCCCceEEeccCCc-ccHHHHHHHHhcCCCCCCcCcCcC
Q 005363 651 CCICQEEYNDGEDTGILHCGHD-FHTSCIKQWLMHKNLCPICKTTAL 696 (700)
Q Consensus 651 C~ICLEef~~~del~~LpCGHi-FH~~CI~qWL~~knsCPICR~~Ll 696 (700)
|.+|-+. ...+..+||-|. +|..|-.. ...||+|+....
T Consensus 161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcC---CceEEeecccceEeccccccc----CccCCCCcChhh
Confidence 8888555 445667899986 88888643 456999998654
No 103
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=79.41 E-value=2.1 Score=42.70 Aligned_cols=37 Identities=24% Similarity=0.441 Sum_probs=23.4
Q ss_pred CCCccccccCccCCCCceEEe---------ccCCc-ccHHHHHHHHh
Q 005363 647 EQEPCCICQEEYNDGEDTGIL---------HCGHD-FHTSCIKQWLM 683 (700)
Q Consensus 647 ed~~C~ICLEef~~~del~~L---------pCGHi-FH~~CI~qWL~ 683 (700)
++..|+||||.-.+...+.+. -|+-. -|..|+++.-+
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 356799999987766522211 13322 37899998753
No 104
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.59 E-value=1.3 Score=47.85 Aligned_cols=27 Identities=26% Similarity=0.701 Sum_probs=21.9
Q ss_pred cCCcccHHHHHHHHh-------------cCCCCCCcCcCc
Q 005363 669 CGHDFHTSCIKQWLM-------------HKNLCPICKTTA 695 (700)
Q Consensus 669 CGHiFH~~CI~qWL~-------------~knsCPICR~~L 695 (700)
|...+|..|+-+|+. .+.+||+||+..
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f 364 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF 364 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence 667899999999874 445699999864
No 105
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=72.85 E-value=1.4 Score=51.66 Aligned_cols=43 Identities=23% Similarity=0.655 Sum_probs=27.6
Q ss_pred CCCccccccCc-----cCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcC
Q 005363 647 EQEPCCICQEE-----YNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICK 692 (700)
Q Consensus 647 ed~~C~ICLEe-----f~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR 692 (700)
....|.||... |......++..|+++||.+|.+. .+..||.|-
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~ 557 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRCE 557 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCchH
Confidence 34567788432 22222344668999999999754 344499994
No 106
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=71.01 E-value=3.7 Score=33.17 Aligned_cols=43 Identities=19% Similarity=0.313 Sum_probs=20.0
Q ss_pred CccccccCccCCCCceEEeccCCcccHHHHHHHHh---cC--CCCCCcCcC
Q 005363 649 EPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM---HK--NLCPICKTT 694 (700)
Q Consensus 649 ~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~---~k--nsCPICR~~ 694 (700)
..|+|....+..+. +-..|.|.-|.+ +..||. .+ -.||+|.++
T Consensus 3 L~CPls~~~i~~P~--Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPV--RGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEE--EETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCc--cCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 46888888876655 455899984322 345554 22 349999874
No 107
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=70.95 E-value=3.1 Score=49.91 Aligned_cols=41 Identities=29% Similarity=0.645 Sum_probs=29.6
Q ss_pred CccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCC
Q 005363 649 EPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPI 690 (700)
Q Consensus 649 ~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPI 690 (700)
..|++|-..+ .+..+-+--|+|.-|..|+++|+.....||.
T Consensus 780 ~~CtVC~~vi-~G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVI-RGVDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeeccee-eeeEeecccccccccHHHHHHHHhcCCCCcc
Confidence 3677885443 2333333469999999999999998887766
No 108
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.09 E-value=2.7 Score=47.69 Aligned_cols=38 Identities=34% Similarity=0.689 Sum_probs=31.7
Q ss_pred CCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcC
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK 685 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~k 685 (700)
.....|-||.+.+.. .+..+.|+|.||..|+...|..+
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~k 105 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGTK 105 (444)
T ss_pred CccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhhe
Confidence 456789999999876 56677999999999999998744
No 109
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=69.52 E-value=2.2 Score=45.64 Aligned_cols=49 Identities=20% Similarity=0.526 Sum_probs=35.8
Q ss_pred CCccccccCccCCCCceEEe----ccCCcccHHHHHHHHh---------cCCCCCCcCcCcC
Q 005363 648 QEPCCICQEEYNDGEDTGIL----HCGHDFHTSCIKQWLM---------HKNLCPICKTTAL 696 (700)
Q Consensus 648 d~~C~ICLEef~~~del~~L----pCGHiFH~~CI~qWL~---------~knsCPICR~~Ll 696 (700)
..+|-||.+++.+.+..+.+ .|.-++|..|+-.-+. ....||.|++.+.
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~ 243 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLS 243 (276)
T ss_pred chhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceee
Confidence 35899999999655544433 5899999999988443 2335999998654
No 110
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=69.24 E-value=5.4 Score=33.23 Aligned_cols=44 Identities=30% Similarity=0.757 Sum_probs=32.2
Q ss_pred CCCccccccCccCCCCceEEe-ccCCcccHHHHHHHHhcCCCCCC--cCcC
Q 005363 647 EQEPCCICQEEYNDGEDTGIL-HCGHDFHTSCIKQWLMHKNLCPI--CKTT 694 (700)
Q Consensus 647 ed~~C~ICLEef~~~del~~L-pCGHiFH~~CI~qWL~~knsCPI--CR~~ 694 (700)
....|.+|-+.|.++++++.- .||-.||+.|... ...|-+ |.+.
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~~ 50 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCINYSCGTG 50 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEeccCCCC
Confidence 345799999999977766555 6999999999644 444544 5543
No 111
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.29 E-value=3.5 Score=43.80 Aligned_cols=35 Identities=17% Similarity=0.311 Sum_probs=30.6
Q ss_pred CCCCccccccCccCCCCceEEeccCCcccHHHHHHHHh
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM 683 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~ 683 (700)
.+-+.|+.|+..+.++. +.+=||+|+++||.+.+.
T Consensus 41 K~FdcCsLtLqPc~dPv---it~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 41 KPFDCCSLTLQPCRDPV---ITPDGYLFDREAILEYIL 75 (303)
T ss_pred CCcceeeeecccccCCc---cCCCCeeeeHHHHHHHHH
Confidence 44567999999999988 889999999999999875
No 112
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.46 E-value=2.2 Score=51.27 Aligned_cols=45 Identities=27% Similarity=0.630 Sum_probs=33.0
Q ss_pred CCccccccCccCCC----CceEEeccCCcccHHHHHHHHhcCCCCCCcCc
Q 005363 648 QEPCCICQEEYNDG----EDTGILHCGHDFHTSCIKQWLMHKNLCPICKT 693 (700)
Q Consensus 648 d~~C~ICLEef~~~----del~~LpCGHiFH~~CI~qWL~~knsCPICR~ 693 (700)
+..|.-|.+..... +.++.+.|+|.||..|+.--..+.+ |-+|-.
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~~~ 832 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIESG 832 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChhhc
Confidence 45799998876532 3567889999999999977666554 666543
No 113
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.46 E-value=2.8 Score=45.22 Aligned_cols=37 Identities=22% Similarity=0.639 Sum_probs=30.7
Q ss_pred CCCccccccCccCCCCceEEecc----CCcccHHHHHHHHhcCC
Q 005363 647 EQEPCCICQEEYNDGEDTGILHC----GHDFHTSCIKQWLMHKN 686 (700)
Q Consensus 647 ed~~C~ICLEef~~~del~~LpC----GHiFH~~CI~qWL~~kn 686 (700)
.-..|.+|.|.+++.. ..+| .|.||.-|-++-++.+.
T Consensus 267 apLcCTLC~ERLEDTH---FVQCPSVp~HKFCFPCSResIK~Qg 307 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTH---FVQCPSVPSHKFCFPCSRESIKQQG 307 (352)
T ss_pred CceeehhhhhhhccCc---eeecCCCcccceecccCHHHHHhhc
Confidence 3478999999999888 6667 49999999999988654
No 114
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.33 E-value=2.8 Score=48.82 Aligned_cols=47 Identities=30% Similarity=0.879 Sum_probs=38.2
Q ss_pred CCCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcCCC
Q 005363 645 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALST 698 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll~t 698 (700)
.+....|.||+++. ..+..+|. |.-|+.+|+..+..||.|.+.+..+
T Consensus 476 ~~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~ 522 (543)
T KOG0802|consen 476 REPNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKED 522 (543)
T ss_pred hcccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhcc
Confidence 34567899999998 34566888 8999999999999999998866543
No 115
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=64.44 E-value=5.9 Score=43.61 Aligned_cols=48 Identities=21% Similarity=0.328 Sum_probs=37.2
Q ss_pred CCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcC
Q 005363 647 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTT 694 (700)
Q Consensus 647 ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~ 694 (700)
....|-.|.++.......++-.|++.||.+|=.-.-+.-..||-|...
T Consensus 329 ~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCeh~ 376 (378)
T KOG2807|consen 329 GSRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCEHK 376 (378)
T ss_pred CCcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcCCC
Confidence 445699999988888877788999999999954333345679999854
No 116
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=61.02 E-value=6.6 Score=43.23 Aligned_cols=49 Identities=22% Similarity=0.395 Sum_probs=37.6
Q ss_pred CccccccCccCCCCc-eEEeccCCcccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 649 EPCCICQEEYNDGED-TGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 649 ~~C~ICLEef~~~de-l~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
..|+||.+.....+. ..-.+|++..|..|+..-......||.||++...
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCcccc
Confidence 679999998744442 2233788888888888888888899999987654
No 117
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.34 E-value=4.5 Score=45.33 Aligned_cols=43 Identities=28% Similarity=0.592 Sum_probs=30.4
Q ss_pred CCccccccCccCCCCc---eEEeccCCcccHHHHHHHHhcCCCCCCc
Q 005363 648 QEPCCICQEEYNDGED---TGILHCGHDFHTSCIKQWLMHKNLCPIC 691 (700)
Q Consensus 648 d~~C~ICLEef~~~de---l~~LpCGHiFH~~CI~qWL~~knsCPIC 691 (700)
-..|++|.-.+..... +.+ .|||.||+.|.-.|......|.-|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~C-rC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTC-RCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEe-eccccchhhcCcchhhCCccccCc
Confidence 3457777766654432 333 499999999999998888776544
No 118
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=53.00 E-value=6.5 Score=41.00 Aligned_cols=44 Identities=25% Similarity=0.718 Sum_probs=35.8
Q ss_pred CCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcC
Q 005363 647 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICK 692 (700)
Q Consensus 647 ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR 692 (700)
....|.+|.+-...+. ++-.|+-.||..|+...+.....||.|.
T Consensus 180 nlk~Cn~Ch~LvIqg~--rCg~c~i~~h~~c~qty~q~~~~cphc~ 223 (235)
T KOG4718|consen 180 NLKNCNLCHCLVIQGI--RCGSCNIQYHRGCIQTYLQRRDICPHCG 223 (235)
T ss_pred HHHHHhHhHHHhheee--ccCcccchhhhHHHHHHhcccCcCCchh
Confidence 4467999987766554 3447888999999999999999999993
No 119
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=52.19 E-value=17 Score=43.54 Aligned_cols=46 Identities=17% Similarity=0.266 Sum_probs=26.9
Q ss_pred CCccccccCccCCCCceEEeccCCcccHHHHHHHHh----cC--CCCCCcCcCcCC
Q 005363 648 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM----HK--NLCPICKTTALS 697 (700)
Q Consensus 648 d~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~----~k--nsCPICR~~Ll~ 697 (700)
...|+||.-.+..+. +...|+|+=|.+-. |+. .+ ..||+|.+.+.-
T Consensus 306 SL~CPl~~~Rm~~P~--r~~~CkHlQcFD~~--~~lq~n~~~pTW~CPVC~~~~~~ 357 (636)
T KOG2169|consen 306 SLNCPLSKMRMSLPA--RGHTCKHLQCFDAL--SYLQMNEQKPTWRCPVCQKAAPF 357 (636)
T ss_pred EecCCcccceeecCC--cccccccceecchh--hhHHhccCCCeeeCccCCccccc
Confidence 457888876655544 34567765444332 332 11 139999997754
No 120
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=50.93 E-value=11 Score=38.66 Aligned_cols=42 Identities=29% Similarity=0.691 Sum_probs=28.4
Q ss_pred CCCccccccCc-----cCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCc
Q 005363 647 EQEPCCICQEE-----YNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKT 693 (700)
Q Consensus 647 ed~~C~ICLEe-----f~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~ 693 (700)
....|-||..+ |....-.+.-.|+-+||..|.. +..||-|..
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 34678888752 2222233445899999999975 367999964
No 122
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=46.35 E-value=13 Score=40.82 Aligned_cols=46 Identities=22% Similarity=0.419 Sum_probs=35.1
Q ss_pred CCccccccCccCCCCceEEeccCCcccHHHHHHHHhc---CCCCCCcCc
Q 005363 648 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH---KNLCPICKT 693 (700)
Q Consensus 648 d~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~---knsCPICR~ 693 (700)
...|++-.|.-.+......|.|||+.-.+-+.+.-+. ...||.|=.
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 4568887777777666778899999999998886542 346999954
No 123
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.81 E-value=20 Score=38.48 Aligned_cols=48 Identities=21% Similarity=0.378 Sum_probs=35.5
Q ss_pred CCccccccCccCCCCceEEe-ccCCcccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 648 QEPCCICQEEYNDGEDTGIL-HCGHDFHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 648 d~~C~ICLEef~~~del~~L-pCGHiFH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
...|+|---+|........| .|||+|-..-+++. ....|++|...+..
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~ 159 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQE 159 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccc
Confidence 34688876666655554445 89999999998884 46679999987654
No 124
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.54 E-value=7.4 Score=42.45 Aligned_cols=50 Identities=28% Similarity=0.535 Sum_probs=41.1
Q ss_pred CCCCCccccccCccCCCCceEEe-ccCCcccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 645 QQEQEPCCICQEEYNDGEDTGIL-HCGHDFHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~~del~~L-pCGHiFH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
..+...|-||+..+..+. .. -|.|-|+..|...|....+.||.||..+.+
T Consensus 102 ~~~~~~~~~~~g~l~vpt---~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 102 QQDHDICYICYGKLTVPT---RIQGCWHQFCYVCPKSNFAMGNDCPDCRGKISP 152 (324)
T ss_pred cCCccceeeeeeeEEecc---cccCceeeeeecCCchhhhhhhccchhhcCcCc
Confidence 345667999998887766 33 499999999999999999999999976543
No 125
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.18 E-value=9.6 Score=37.29 Aligned_cols=50 Identities=18% Similarity=0.485 Sum_probs=25.2
Q ss_pred CCCCCccccccCccCCCC-ceEEeccCCcccHHHHHHHHhcCC----CCCCcCcC
Q 005363 645 QQEQEPCCICQEEYNDGE-DTGILHCGHDFHTSCIKQWLMHKN----LCPICKTT 694 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~~d-el~~LpCGHiFH~~CI~qWL~~kn----sCPICR~~ 694 (700)
..++..|-||+..-..+. --.+.=|.-.||..|--+.-.+.+ .|-.|++.
T Consensus 62 v~ddatC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 62 VGDDATCGICHKTKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred cCcCcchhhhhhcccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 356788999986533222 111112333355555433322222 38888763
No 126
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=39.28 E-value=17 Score=33.22 Aligned_cols=40 Identities=25% Similarity=0.698 Sum_probs=30.9
Q ss_pred CCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcCCCC
Q 005363 648 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALSTS 699 (700)
Q Consensus 648 d~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll~tS 699 (700)
...|.||...... =||.||..|..+ +..|.+|-+.+++++
T Consensus 44 ~~~C~~CK~~v~q--------~g~~YCq~CAYk----kGiCamCGKki~dtk 83 (90)
T PF10235_consen 44 SSKCKICKTKVHQ--------PGAKYCQTCAYK----KGICAMCGKKILDTK 83 (90)
T ss_pred Ccccccccccccc--------CCCccChhhhcc----cCcccccCCeecccc
Confidence 4579999766433 357899999754 789999999998764
No 127
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=37.17 E-value=18 Score=29.76 Aligned_cols=42 Identities=26% Similarity=0.544 Sum_probs=20.7
Q ss_pred cccccCccCCCC-------ceEEeccCCcccHHHHHHHHhcCCCCCCcC
Q 005363 651 CCICQEEYNDGE-------DTGILHCGHDFHTSCIKQWLMHKNLCPICK 692 (700)
Q Consensus 651 C~ICLEef~~~d-------el~~LpCGHiFH~~CI~qWL~~knsCPICR 692 (700)
|--|+..|.... ..+.-.|++.||.+|=.=-=+.-..||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 555666666652 123337999999999422223446799884
No 128
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.45 E-value=35 Score=32.42 Aligned_cols=46 Identities=20% Similarity=0.303 Sum_probs=34.4
Q ss_pred CCccccccCccCCCC-----------ceEEeccCCcccHHHHHHHHhcCCCCCCcCc
Q 005363 648 QEPCCICQEEYNDGE-----------DTGILHCGHDFHTSCIKQWLMHKNLCPICKT 693 (700)
Q Consensus 648 d~~C~ICLEef~~~d-----------el~~LpCGHiFH~~CI~qWL~~knsCPICR~ 693 (700)
...|--|+..|.... ......|++.||.+|=.-+-+.-+.||-|..
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~~ 111 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCIH 111 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCCC
Confidence 346999999886531 1234589999999997777777788999973
No 129
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=36.18 E-value=12 Score=42.30 Aligned_cols=29 Identities=28% Similarity=0.723 Sum_probs=0.0
Q ss_pred EEeccCCcccHHHHHHHHhc------CCCCCCcCcCcC
Q 005363 665 GILHCGHDFHTSCIKQWLMH------KNLCPICKTTAL 696 (700)
Q Consensus 665 ~~LpCGHiFH~~CI~qWL~~------knsCPICR~~Ll 696 (700)
+.|.|||++.+ ..|-.. ...||+||+.-+
T Consensus 305 VYl~CGHVhG~---h~Wg~~~~~~~~~r~CPlCr~~g~ 339 (416)
T PF04710_consen 305 VYLNCGHVHGY---HNWGQDSDRDPRSRTCPLCRQVGP 339 (416)
T ss_dssp --------------------------------------
T ss_pred eeccccceeee---cccccccccccccccCCCccccCC
Confidence 46799998764 356542 346999998643
No 130
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=36.18 E-value=28 Score=24.86 Aligned_cols=38 Identities=24% Similarity=0.542 Sum_probs=25.7
Q ss_pred ccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcC
Q 005363 650 PCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTAL 696 (700)
Q Consensus 650 ~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll 696 (700)
.|..|.+.+...+.. ...=+..||..|. .|..|+..|.
T Consensus 1 ~C~~C~~~i~~~~~~-~~~~~~~~H~~Cf--------~C~~C~~~L~ 38 (39)
T smart00132 1 KCAGCGKPIRGGELV-LRALGKVWHPECF--------KCSKCGKPLG 38 (39)
T ss_pred CccccCCcccCCcEE-EEeCCccccccCC--------CCcccCCcCc
Confidence 378888887665322 2234678998875 6888888764
No 131
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=36.07 E-value=30 Score=38.25 Aligned_cols=53 Identities=25% Similarity=0.525 Sum_probs=35.1
Q ss_pred CCCCCccccccCccCC---------------CC-ceEEeccCCcccHHHHHHHHhc---------CCCCCCcCcCcCC
Q 005363 645 QQEQEPCCICQEEYND---------------GE-DTGILHCGHDFHTSCIKQWLMH---------KNLCPICKTTALS 697 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~---------------~d-el~~LpCGHiFH~~CI~qWL~~---------knsCPICR~~Ll~ 697 (700)
...+.+|++|+..-.. +. .-...||||+--.+-.+=|-.. ...||.|-+.|..
T Consensus 338 g~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 338 GQRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred CcccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 3457789999865220 00 1123499999888889989752 2359999887643
No 132
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.06 E-value=7.1 Score=41.46 Aligned_cols=48 Identities=29% Similarity=0.668 Sum_probs=36.3
Q ss_pred CCCccccccCccCCC-C--ceEEec--------cCCcccHHHHHHHHhcC-CCCCCcCcC
Q 005363 647 EQEPCCICQEEYNDG-E--DTGILH--------CGHDFHTSCIKQWLMHK-NLCPICKTT 694 (700)
Q Consensus 647 ed~~C~ICLEef~~~-d--el~~Lp--------CGHiFH~~CI~qWL~~k-nsCPICR~~ 694 (700)
....|.||...|... . ..+.+. |+|..|..|+..-+... -.||.|+..
T Consensus 206 ~~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 206 IEKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 446799999999843 2 223345 99999999999987755 479999864
No 133
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=36.04 E-value=18 Score=29.25 Aligned_cols=38 Identities=18% Similarity=0.594 Sum_probs=21.5
Q ss_pred CCccccccCccCCCCceEEeccCCcccHHHHHHHHh--cCCCCCCcCcCc
Q 005363 648 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM--HKNLCPICKTTA 695 (700)
Q Consensus 648 d~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~--~knsCPICR~~L 695 (700)
...|+.|-+.|.... +...|..+-.. ....||+|.+.+
T Consensus 2 ~f~CP~C~~~~~~~~----------L~~H~~~~H~~~~~~v~CPiC~~~~ 41 (54)
T PF05605_consen 2 SFTCPYCGKGFSESS----------LVEHCEDEHRSESKNVVCPICSSRV 41 (54)
T ss_pred CcCCCCCCCccCHHH----------HHHHHHhHCcCCCCCccCCCchhhh
Confidence 457999988554332 22334444333 234599998753
No 134
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=35.25 E-value=15 Score=28.75 Aligned_cols=43 Identities=23% Similarity=0.591 Sum_probs=29.2
Q ss_pred cccccCccCCCCceEEeccCCcccHHHHHHHHh------cCCCCCCcCc
Q 005363 651 CCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM------HKNLCPICKT 693 (700)
Q Consensus 651 C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~------~knsCPICR~ 693 (700)
|.||.........+..-.|+-.||..|+..-.. ..-.||.|+.
T Consensus 2 C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 2 CPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp BTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred CcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 889988544444444448999999999755432 2346888864
No 135
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=34.25 E-value=22 Score=42.05 Aligned_cols=36 Identities=33% Similarity=0.630 Sum_probs=25.9
Q ss_pred CCCCccccccCccCCCC----------ceEEeccCCcccHHHHHHH
Q 005363 646 QEQEPCCICQEEYNDGE----------DTGILHCGHDFHTSCIKQW 681 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~d----------el~~LpCGHiFH~~CI~qW 681 (700)
+....|.||.|.|..-- +.+.+.=|-+||..|+..-
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLEFGRIFHSKCLSEK 556 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeeccCceeeccccchH
Confidence 67788999999996411 1334446899999998553
No 136
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=33.74 E-value=63 Score=27.35 Aligned_cols=46 Identities=20% Similarity=0.514 Sum_probs=30.6
Q ss_pred ccccccCccCCCC-ceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 650 PCCICQEEYNDGE-DTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 650 ~C~ICLEef~~~d-el~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
.|-.|-.++.... +..+-.=...||.+|....| +..||.|--.+..
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETML--NGVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHh--cCcCcCCCCcccc
Confidence 4666777765544 22222112459999999866 7899999887754
No 137
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=33.39 E-value=16 Score=43.77 Aligned_cols=50 Identities=26% Similarity=0.587 Sum_probs=31.9
Q ss_pred CCCCccccccCccCCCC--ceEEe-----ccCCcccHHHHHHH--H--------hcCCCCCCcCcCc
Q 005363 646 QEQEPCCICQEEYNDGE--DTGIL-----HCGHDFHTSCIKQW--L--------MHKNLCPICKTTA 695 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~d--el~~L-----pCGHiFH~~CI~qW--L--------~~knsCPICR~~L 695 (700)
.....|.||.|+=...+ .-.++ .|...||..|...- | ..-+.|-+|+.-+
T Consensus 115 RfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~Hf 181 (900)
T KOG0956|consen 115 RFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHF 181 (900)
T ss_pred hhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHH
Confidence 34567999999854433 11233 57788999998653 1 1224699998643
No 138
>PLN02189 cellulose synthase
Probab=31.12 E-value=41 Score=42.39 Aligned_cols=50 Identities=24% Similarity=0.394 Sum_probs=34.0
Q ss_pred CCCccccccCccCCCC---ce-EEeccCCcccHHHHHHHHh-cCCCCCCcCcCcC
Q 005363 647 EQEPCCICQEEYNDGE---DT-GILHCGHDFHTSCIKQWLM-HKNLCPICKTTAL 696 (700)
Q Consensus 647 ed~~C~ICLEef~~~d---el-~~LpCGHiFH~~CI~qWL~-~knsCPICR~~Ll 696 (700)
....|.||-++..... .- .+-.|+--.|+.|.+-=-+ .+..||.||+...
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 4457999999976433 22 2225888899999843222 4567999999765
No 139
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=31.01 E-value=46 Score=40.57 Aligned_cols=58 Identities=24% Similarity=0.230 Sum_probs=41.4
Q ss_pred CCCCCCCccccccCccCCCCceEEeccCC-cccHHHHHHHHhc---CCCCCCcCcCcCCCCC
Q 005363 643 GSQQEQEPCCICQEEYNDGEDTGILHCGH-DFHTSCIKQWLMH---KNLCPICKTTALSTSS 700 (700)
Q Consensus 643 ~~~~ed~~C~ICLEef~~~del~~LpCGH-iFH~~CI~qWL~~---knsCPICR~~Ll~tSs 700 (700)
+.......|.||.+....+-..+++.|-. ..|..|...=... +..-|+|-...+++++
T Consensus 598 E~~kH~~kCniCk~~pIvG~RyR~l~~fn~dlCq~CF~sgraak~hk~~~pM~Ey~~~tts~ 659 (966)
T KOG4286|consen 598 ETAKHQAKCNICKECPIIGFRYRSLKHFNYDICQSCFFSGRAAKGHKMHYPMVEYCTPTTSG 659 (966)
T ss_pred HHHHhhhhcchhhhCccceeeeeehhhcChhHHhhHhhhcccccCCCCCCCceeeeCCCCCh
Confidence 44456678999999999999888888874 3688887554432 2336888777777653
No 140
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=30.46 E-value=22 Score=42.98 Aligned_cols=47 Identities=28% Similarity=0.545 Sum_probs=33.6
Q ss_pred CCCccccccCccCCCCc-------eEEeccCCcc--------------------cHHHHHHHHhc--------CCCCCCc
Q 005363 647 EQEPCCICQEEYNDGED-------TGILHCGHDF--------------------HTSCIKQWLMH--------KNLCPIC 691 (700)
Q Consensus 647 ed~~C~ICLEef~~~de-------l~~LpCGHiF--------------------H~~CI~qWL~~--------knsCPIC 691 (700)
+...|.-|++++.++.. ..++.||..| |..|-+++-.- -..||.|
T Consensus 100 D~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~C 179 (750)
T COG0068 100 DAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPKC 179 (750)
T ss_pred chhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCccc
Confidence 44579999999988875 3356788776 88898876431 2349999
Q ss_pred Cc
Q 005363 692 KT 693 (700)
Q Consensus 692 R~ 693 (700)
.=
T Consensus 180 GP 181 (750)
T COG0068 180 GP 181 (750)
T ss_pred CC
Confidence 64
No 141
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=29.85 E-value=23 Score=26.81 Aligned_cols=25 Identities=32% Similarity=0.747 Sum_probs=17.0
Q ss_pred ccccccCccCCCCc--------eEEeccCCccc
Q 005363 650 PCCICQEEYNDGED--------TGILHCGHDFH 674 (700)
Q Consensus 650 ~C~ICLEef~~~de--------l~~LpCGHiFH 674 (700)
.|+-|...|..+++ ++...|+|+|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 58888888876553 44457888774
No 142
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.04 E-value=29 Score=41.72 Aligned_cols=43 Identities=16% Similarity=0.417 Sum_probs=31.0
Q ss_pred CCccccccCccC-CCCceEEeccCCcccHHHHHHHHhcCCCCCCcCc
Q 005363 648 QEPCCICQEEYN-DGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKT 693 (700)
Q Consensus 648 d~~C~ICLEef~-~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~ 693 (700)
...|.+|+..-. ..+..+.+.|+-.||..| |+-....||+|--
T Consensus 654 ~r~C~vcq~pedse~~v~rt~~C~~~~C~~c---~~~~~~~~~vC~~ 697 (717)
T KOG3726|consen 654 IRTCKVCQLPEDSETDVCRTTFCYTPYCVAC---SLDYASISEVCGP 697 (717)
T ss_pred HHHHHHhcCCcCccccccCccccCCcchHhh---hhhhhccCcccCc
Confidence 356889976543 233455668999999998 5567888999964
No 143
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=27.81 E-value=52 Score=41.70 Aligned_cols=50 Identities=22% Similarity=0.397 Sum_probs=34.1
Q ss_pred CCCccccccCccCCCCc----eEEeccCCcccHHHHHHHH-hcCCCCCCcCcCcC
Q 005363 647 EQEPCCICQEEYNDGED----TGILHCGHDFHTSCIKQWL-MHKNLCPICKTTAL 696 (700)
Q Consensus 647 ed~~C~ICLEef~~~de----l~~LpCGHiFH~~CI~qWL-~~knsCPICR~~Ll 696 (700)
....|-||=++.....+ +.+-.|+--.|+.|.+==- +.+..||.||+...
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 44589999999764432 2333688779999983211 24567999998764
No 144
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=26.77 E-value=38 Score=29.52 Aligned_cols=11 Identities=27% Similarity=1.053 Sum_probs=8.4
Q ss_pred ccHHHHHHHHh
Q 005363 673 FHTSCIKQWLM 683 (700)
Q Consensus 673 FH~~CI~qWL~ 683 (700)
||+.|+.+|+.
T Consensus 12 FCRNCLskWy~ 22 (68)
T PF06844_consen 12 FCRNCLSKWYR 22 (68)
T ss_dssp --HHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 145
>PLN02436 cellulose synthase A
Probab=26.43 E-value=55 Score=41.47 Aligned_cols=50 Identities=26% Similarity=0.458 Sum_probs=33.9
Q ss_pred CCCccccccCccCC---CCceE-EeccCCcccHHHHHHHHh-cCCCCCCcCcCcC
Q 005363 647 EQEPCCICQEEYND---GEDTG-ILHCGHDFHTSCIKQWLM-HKNLCPICKTTAL 696 (700)
Q Consensus 647 ed~~C~ICLEef~~---~del~-~LpCGHiFH~~CI~qWL~-~knsCPICR~~Ll 696 (700)
....|-||=++... ++.-+ +-.|+--.|+.|.+-=-+ .+..||.||+...
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 44589999999743 33222 226888899999843222 4567999999764
No 146
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=26.26 E-value=23 Score=45.98 Aligned_cols=51 Identities=22% Similarity=0.496 Sum_probs=35.6
Q ss_pred CCCCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhc----CCCCCCcCcC
Q 005363 644 SQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH----KNLCPICKTT 694 (700)
Q Consensus 644 ~~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~----knsCPICR~~ 694 (700)
.......|-||.....+...+.+.-|--.||+.|++.-+.. .-.||-|+..
T Consensus 1104 ~s~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e 1158 (1404)
T KOG1245|consen 1104 RSAVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKE 1158 (1404)
T ss_pred cccchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchh
Confidence 34455678888888777665556677788888888877753 2348888864
No 147
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=26.20 E-value=14 Score=40.10 Aligned_cols=40 Identities=28% Similarity=0.491 Sum_probs=31.4
Q ss_pred CCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcC
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK 685 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~k 685 (700)
.....|.+|+++|..+.....+.|--+||.+|+..|+...
T Consensus 212 k~~rvC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (288)
T KOG1729|consen 212 KPIRVCDICFEELEKGARGDREDSLPVFHGKCYPNWLTTG 251 (288)
T ss_pred CCceecHHHHHHHhcccccchhhccccccccccccccccc
Confidence 3444899999999875555566677799999999999743
No 148
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=25.65 E-value=23 Score=40.12 Aligned_cols=50 Identities=24% Similarity=0.525 Sum_probs=0.0
Q ss_pred CCCccccccCccC--------------CCC--ceEEeccCCcccHHHHHHHHhc---------CCCCCCcCcCcC
Q 005363 647 EQEPCCICQEEYN--------------DGE--DTGILHCGHDFHTSCIKQWLMH---------KNLCPICKTTAL 696 (700)
Q Consensus 647 ed~~C~ICLEef~--------------~~d--el~~LpCGHiFH~~CI~qWL~~---------knsCPICR~~Ll 696 (700)
...+|++|+..-. +.. ....-||||+-=.++.+-|-.. +..||.|-..|.
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 3678999985432 111 1223499999999999999652 235999988775
No 149
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=25.37 E-value=29 Score=27.50 Aligned_cols=9 Identities=33% Similarity=0.859 Sum_probs=4.1
Q ss_pred cCCcccHHH
Q 005363 669 CGHDFHTSC 677 (700)
Q Consensus 669 CGHiFH~~C 677 (700)
-+..||..|
T Consensus 18 ~~~~~H~~C 26 (58)
T PF00412_consen 18 MGKFWHPEC 26 (58)
T ss_dssp TTEEEETTT
T ss_pred CCcEEEccc
Confidence 444455444
No 150
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=24.81 E-value=6.4 Score=34.39 Aligned_cols=39 Identities=28% Similarity=0.603 Sum_probs=19.7
Q ss_pred CccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCc
Q 005363 649 EPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 695 (700)
Q Consensus 649 ~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~L 695 (700)
..|+.|..++.... +|.+|..|-.. +.....||-|..+|
T Consensus 2 ~~CP~C~~~L~~~~-------~~~~C~~C~~~-~~~~a~CPdC~~~L 40 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-------GHYHCEACQKD-YKKEAFCPDCGQPL 40 (70)
T ss_dssp -B-SSS-SBEEEET-------TEEEETTT--E-EEEEEE-TTT-SB-
T ss_pred CcCCCCCCccEEeC-------CEEECcccccc-ceecccCCCcccHH
Confidence 46888887754322 56666666554 34556688888775
No 151
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=24.28 E-value=25 Score=40.60 Aligned_cols=47 Identities=15% Similarity=0.446 Sum_probs=29.6
Q ss_pred CCccccccCccCCC-Cc-eEEeccCCcccHHHHHHHHhc--------CCCCCCcCcC
Q 005363 648 QEPCCICQEEYNDG-ED-TGILHCGHDFHTSCIKQWLMH--------KNLCPICKTT 694 (700)
Q Consensus 648 d~~C~ICLEef~~~-de-l~~LpCGHiFH~~CI~qWL~~--------knsCPICR~~ 694 (700)
+..|++|+.-.... .. +.+-.|.-.||..|.+...+. ...|=+|...
T Consensus 168 n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 168 NLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRG 224 (464)
T ss_pred cceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccc
Confidence 45599998654332 22 223379999999997665431 1248888764
No 152
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=24.19 E-value=41 Score=36.18 Aligned_cols=46 Identities=20% Similarity=0.245 Sum_probs=33.4
Q ss_pred CCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCC--CCCCcCcC
Q 005363 647 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKN--LCPICKTT 694 (700)
Q Consensus 647 ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~kn--sCPICR~~ 694 (700)
-...|+|=...+..+. +-..|||+|-++-|.+.+..+. .||+--.+
T Consensus 175 fs~rdPis~~~I~nPv--iSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNPV--ISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred hcccCchhhhhhhchh--hhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 3457888766666665 3458999999999999988643 48874443
No 153
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=23.61 E-value=34 Score=25.95 Aligned_cols=25 Identities=32% Similarity=0.713 Sum_probs=17.1
Q ss_pred ccccccCccCCCCc--------eEEeccCCccc
Q 005363 650 PCCICQEEYNDGED--------TGILHCGHDFH 674 (700)
Q Consensus 650 ~C~ICLEef~~~de--------l~~LpCGHiFH 674 (700)
.|+-|...|..+++ ++.-.|+|+|.
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 58888888876553 44446888774
No 154
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=23.37 E-value=50 Score=23.67 Aligned_cols=29 Identities=24% Similarity=0.535 Sum_probs=11.6
Q ss_pred ccccccCccCCCCceEEeccCCcccHHHH
Q 005363 650 PCCICQEEYNDGEDTGILHCGHDFHTSCI 678 (700)
Q Consensus 650 ~C~ICLEef~~~del~~LpCGHiFH~~CI 678 (700)
.|.+|.+............|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 58889888766444556689999999996
No 155
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=22.77 E-value=31 Score=28.79 Aligned_cols=37 Identities=24% Similarity=0.501 Sum_probs=19.2
Q ss_pred CCCCccccccCccCCCCc-eEEeccCCcccHHHHHHHH
Q 005363 646 QEQEPCCICQEEYNDGED-TGILHCGHDFHTSCIKQWL 682 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~de-l~~LpCGHiFH~~CI~qWL 682 (700)
.+...|.+|...|..-.. -..-.||++||.+|....+
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 455789999999965432 2223799999999987654
No 156
>PLN02400 cellulose synthase
Probab=22.52 E-value=54 Score=41.55 Aligned_cols=50 Identities=22% Similarity=0.417 Sum_probs=33.9
Q ss_pred CCCccccccCccCCCCc----eEEeccCCcccHHHHHHHH-hcCCCCCCcCcCcC
Q 005363 647 EQEPCCICQEEYNDGED----TGILHCGHDFHTSCIKQWL-MHKNLCPICKTTAL 696 (700)
Q Consensus 647 ed~~C~ICLEef~~~de----l~~LpCGHiFH~~CI~qWL-~~knsCPICR~~Ll 696 (700)
....|-||=++....++ +.+-.|+--.|+.|.+==- +....||.||+...
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 44579999999765432 3333688779999983211 13457999999765
No 157
>PLN02248 cellulose synthase-like protein
Probab=22.22 E-value=1.1e+02 Score=39.09 Aligned_cols=34 Identities=24% Similarity=0.463 Sum_probs=28.2
Q ss_pred ceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcC
Q 005363 663 DTGILHCGHDFHTSCIKQWLMHKNLCPICKTTAL 696 (700)
Q Consensus 663 el~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll 696 (700)
++....|++..|++|...-++....||-||.+..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (1135)
T PLN02248 144 DLLPCECGFKICRDCYIDAVKSGGICPGCKEPYK 177 (1135)
T ss_pred cCCcccccchhHHhHhhhhhhcCCCCCCCccccc
Confidence 3444468899999999999999999999998763
No 158
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=22.00 E-value=11 Score=40.29 Aligned_cols=48 Identities=19% Similarity=0.292 Sum_probs=20.5
Q ss_pred CCCccccccCccCCCCceEEe--ccCCcccHHHHHHHHhcCCCCCCcCcC
Q 005363 647 EQEPCCICQEEYNDGEDTGIL--HCGHDFHTSCIKQWLMHKNLCPICKTT 694 (700)
Q Consensus 647 ed~~C~ICLEef~~~del~~L--pCGHiFH~~CI~qWL~~knsCPICR~~ 694 (700)
....|+||=...........- --.|.+|.-|-.+|-.....||.|-..
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 346899996654322100000 013567778889998888899999764
No 159
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=20.81 E-value=93 Score=27.99 Aligned_cols=50 Identities=22% Similarity=0.435 Sum_probs=20.3
Q ss_pred CCCccccccCccCCCC--ceE--EeccCCcccHHHHHHHHh-cCCCCCCcCcCcC
Q 005363 647 EQEPCCICQEEYNDGE--DTG--ILHCGHDFHTSCIKQWLM-HKNLCPICKTTAL 696 (700)
Q Consensus 647 ed~~C~ICLEef~~~d--el~--~LpCGHiFH~~CI~qWL~-~knsCPICR~~Ll 696 (700)
....|-||=++..... ++. ...|+--.|+.|..==.+ ....||.|++...
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 4567999998875433 222 236888889999865444 4567999998754
No 161
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.45 E-value=55 Score=37.39 Aligned_cols=35 Identities=20% Similarity=0.406 Sum_probs=25.5
Q ss_pred CCCccccccCccCCCC---ceEEeccCCcccHHHHHHH
Q 005363 647 EQEPCCICQEEYNDGE---DTGILHCGHDFHTSCIKQW 681 (700)
Q Consensus 647 ed~~C~ICLEef~~~d---el~~LpCGHiFH~~CI~qW 681 (700)
....|+-|.-.++..+ +..++.|+|.||+-|-.-.
T Consensus 367 N~krCP~C~v~IEr~eGCnKM~C~~c~~~fc~~c~~~l 404 (445)
T KOG1814|consen 367 NSKRCPKCKVVIERSEGCNKMHCTKCGTYFCWICAELL 404 (445)
T ss_pred cCCCCCcccceeecCCCccceeeccccccceeehhhhc
Confidence 3456888877665544 6777899999999997543
No 162
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=20.23 E-value=67 Score=25.59 Aligned_cols=35 Identities=17% Similarity=0.441 Sum_probs=25.8
Q ss_pred CccccccCccCCCC-ceEEeccCCcccHHHHHHHHh
Q 005363 649 EPCCICQEEYNDGE-DTGILHCGHDFHTSCIKQWLM 683 (700)
Q Consensus 649 ~~C~ICLEef~~~d-el~~LpCGHiFH~~CI~qWL~ 683 (700)
..|.+|...|..-. +...-.||++||..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 56899988887644 222347999999999877654
Done!