Query 005363
Match_columns 700
No_of_seqs 243 out of 1777
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 23:13:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005363.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005363hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.5 2.3E-14 7.9E-19 124.6 6.6 76 621-697 14-89 (91)
2 1x4j_A Ring finger protein 38; 99.4 1.2E-13 4.2E-18 115.1 4.1 56 644-699 19-74 (75)
3 2ep4_A Ring finger protein 24; 99.4 2.5E-13 8.4E-18 112.7 5.8 54 645-698 12-65 (74)
4 2kiz_A E3 ubiquitin-protein li 99.4 5.1E-13 1.7E-17 109.3 6.3 55 644-698 10-64 (69)
5 1iym_A EL5; ring-H2 finger, ub 99.4 2.8E-13 9.7E-18 106.0 4.1 51 646-696 3-54 (55)
6 2ect_A Ring finger protein 126 99.4 4E-13 1.4E-17 112.5 4.7 55 644-698 11-65 (78)
7 1v87_A Deltex protein 2; ring- 99.3 2.6E-12 8.7E-17 114.9 6.6 51 647-697 24-94 (114)
8 2ecm_A Ring finger and CHY zin 99.3 3.5E-12 1.2E-16 99.6 4.9 51 646-696 3-54 (55)
9 2ecl_A Ring-box protein 2; RNF 99.2 3.8E-12 1.3E-16 108.6 5.0 52 646-697 13-76 (81)
10 3ng2_A RNF4, snurf, ring finge 99.2 3.3E-12 1.1E-16 104.5 3.6 53 646-698 8-64 (71)
11 2ea6_A Ring finger protein 4; 99.2 4.3E-12 1.5E-16 102.9 4.2 53 645-697 12-68 (69)
12 2d8t_A Dactylidin, ring finger 99.2 7E-12 2.4E-16 103.6 3.4 49 645-696 12-60 (71)
13 2xeu_A Ring finger protein 4; 99.2 8.2E-12 2.8E-16 99.8 3.6 52 647-698 2-57 (64)
14 3dpl_R Ring-box protein 1; ubi 99.2 1.9E-11 6.5E-16 110.3 5.7 51 645-695 34-99 (106)
15 2djb_A Polycomb group ring fin 99.2 1.9E-11 6.5E-16 101.2 5.1 52 644-698 11-63 (72)
16 2ct2_A Tripartite motif protei 99.1 3.6E-11 1.2E-15 102.0 6.1 54 644-697 11-68 (88)
17 2csy_A Zinc finger protein 183 99.1 2.7E-11 9.1E-16 102.4 4.5 49 645-696 12-60 (81)
18 2ecn_A Ring finger protein 141 99.1 1.3E-11 4.4E-16 101.3 2.2 50 645-698 12-61 (70)
19 1chc_A Equine herpes virus-1 r 99.1 2.4E-11 8.2E-16 98.9 3.6 50 646-697 3-52 (68)
20 2ysl_A Tripartite motif-contai 99.1 5.1E-11 1.7E-15 98.1 4.6 51 645-698 17-70 (73)
21 2d8s_A Cellular modulator of i 99.1 4.8E-11 1.7E-15 102.6 4.6 54 643-697 10-70 (80)
22 2yur_A Retinoblastoma-binding 99.1 5E-11 1.7E-15 99.5 4.5 51 644-697 11-64 (74)
23 4ayc_A E3 ubiquitin-protein li 99.1 2.8E-11 9.6E-16 112.5 3.1 48 647-697 52-99 (138)
24 2ecy_A TNF receptor-associated 99.1 6.3E-11 2.2E-15 96.3 4.7 50 646-698 13-63 (66)
25 2ecw_A Tripartite motif-contai 99.1 1.2E-10 4.2E-15 97.6 5.5 50 645-697 16-71 (85)
26 1t1h_A Gspef-atpub14, armadill 99.1 1E-10 3.6E-15 97.7 4.9 49 646-697 6-55 (78)
27 2ecv_A Tripartite motif-contai 99.0 1.5E-10 5.2E-15 97.0 4.7 50 645-697 16-71 (85)
28 4a0k_B E3 ubiquitin-protein li 99.0 2.6E-11 9E-16 111.4 -0.3 51 645-695 45-110 (117)
29 2ysj_A Tripartite motif-contai 99.0 2.1E-10 7.3E-15 92.2 4.9 45 644-691 16-63 (63)
30 3lrq_A E3 ubiquitin-protein li 99.0 7.5E-11 2.6E-15 104.1 2.4 49 646-697 20-70 (100)
31 2egp_A Tripartite motif-contai 99.0 7.1E-11 2.4E-15 98.5 2.1 50 645-697 9-65 (79)
32 2y43_A E3 ubiquitin-protein li 99.0 1.3E-10 4.5E-15 101.6 2.8 48 647-697 21-69 (99)
33 4ap4_A E3 ubiquitin ligase RNF 99.0 1.8E-10 6.1E-15 103.9 3.7 52 646-697 5-60 (133)
34 2ckl_A Polycomb group ring fin 99.0 2.2E-10 7.4E-15 101.9 4.0 49 646-697 13-62 (108)
35 3ztg_A E3 ubiquitin-protein li 99.0 2.6E-10 9E-15 98.1 4.4 49 644-695 9-60 (92)
36 2ecj_A Tripartite motif-contai 99.0 3.4E-10 1.2E-14 89.0 4.3 44 645-691 12-58 (58)
37 3fl2_A E3 ubiquitin-protein li 99.0 2.2E-10 7.6E-15 104.2 3.2 48 647-697 51-99 (124)
38 1jm7_A BRCA1, breast cancer ty 98.9 7.3E-10 2.5E-14 98.1 4.5 47 648-697 21-70 (112)
39 1g25_A CDK-activating kinase a 98.9 1.1E-09 3.7E-14 88.8 4.6 52 647-698 2-56 (65)
40 2ckl_B Ubiquitin ligase protei 98.9 6.7E-10 2.3E-14 105.7 3.9 47 647-696 53-101 (165)
41 1z6u_A NP95-like ring finger p 98.9 5.9E-10 2E-14 105.7 3.3 49 647-698 77-126 (150)
42 2ct0_A Non-SMC element 1 homol 98.9 1.6E-09 5.3E-14 92.3 4.7 50 646-697 13-64 (74)
43 3l11_A E3 ubiquitin-protein li 98.9 2.8E-10 9.5E-15 102.1 -0.0 48 646-696 13-61 (115)
44 4ap4_A E3 ubiquitin ligase RNF 98.8 1.2E-09 4E-14 98.6 3.5 52 646-697 70-125 (133)
45 3hct_A TNF receptor-associated 98.8 1E-09 3.6E-14 99.2 2.9 51 644-697 14-65 (118)
46 2kr4_A Ubiquitin conjugation f 98.8 2.2E-09 7.4E-14 92.6 4.4 49 646-697 12-60 (85)
47 2kre_A Ubiquitin conjugation f 98.8 3.1E-09 1.1E-13 94.6 4.3 49 646-697 27-75 (100)
48 1rmd_A RAG1; V(D)J recombinati 98.8 2.3E-09 7.8E-14 96.3 3.0 48 647-697 22-70 (116)
49 1wgm_A Ubiquitin conjugation f 98.8 4E-09 1.4E-13 93.6 4.3 49 646-697 20-69 (98)
50 2c2l_A CHIP, carboxy terminus 98.7 5.4E-09 1.8E-13 105.2 5.0 49 646-697 206-255 (281)
51 2vje_A E3 ubiquitin-protein li 98.7 4.8E-09 1.6E-13 85.9 3.2 48 646-696 6-56 (64)
52 2y1n_A E3 ubiquitin-protein li 98.7 6E-09 2.1E-13 112.9 4.1 48 647-697 331-379 (389)
53 1bor_A Transcription factor PM 98.7 4.9E-09 1.7E-13 83.4 1.9 46 646-697 4-49 (56)
54 1e4u_A Transcriptional repress 98.7 1.3E-08 4.4E-13 86.9 4.6 52 645-697 8-62 (78)
55 3knv_A TNF receptor-associated 98.7 3.2E-09 1.1E-13 99.8 0.9 49 644-695 27-76 (141)
56 1jm7_B BARD1, BRCA1-associated 98.7 3.3E-09 1.1E-13 95.8 0.7 45 647-696 21-66 (117)
57 2vje_B MDM4 protein; proto-onc 98.7 8.1E-09 2.8E-13 84.3 2.8 48 646-696 5-55 (63)
58 2yu4_A E3 SUMO-protein ligase 98.6 1.7E-08 5.6E-13 88.4 3.3 46 646-694 5-59 (94)
59 4ic3_A E3 ubiquitin-protein li 98.6 9.2E-09 3.1E-13 86.2 1.2 44 647-697 23-67 (74)
60 2f42_A STIP1 homology and U-bo 98.5 5.1E-08 1.7E-12 95.7 4.8 50 645-697 103-153 (179)
61 3hcs_A TNF receptor-associated 98.5 3.5E-08 1.2E-12 94.1 3.1 51 644-697 14-65 (170)
62 2ecg_A Baculoviral IAP repeat- 98.4 1.2E-07 4.1E-12 79.3 3.3 43 648-697 25-68 (75)
63 3k1l_B Fancl; UBC, ring, RWD, 98.4 4.8E-08 1.6E-12 104.2 0.9 52 645-696 305-372 (381)
64 1wim_A KIAA0161 protein; ring 98.3 1.5E-07 5.2E-12 81.7 2.2 48 647-694 4-61 (94)
65 2ea5_A Cell growth regulator w 98.3 3E-07 1E-11 76.3 3.5 46 645-697 12-58 (68)
66 2bay_A PRE-mRNA splicing facto 98.3 2.9E-07 9.8E-12 75.1 2.4 46 649-697 4-50 (61)
67 1vyx_A ORF K3, K3RING; zinc-bi 98.3 5.3E-07 1.8E-11 73.5 3.8 48 646-696 4-58 (60)
68 2yho_A E3 ubiquitin-protein li 98.2 1.8E-07 6.1E-12 79.7 0.5 42 648-696 18-60 (79)
69 3htk_C E3 SUMO-protein ligase 98.2 4.2E-07 1.4E-11 94.0 3.0 49 646-696 179-231 (267)
70 3t6p_A Baculoviral IAP repeat- 98.1 3.9E-07 1.3E-11 97.4 0.5 44 647-697 294-338 (345)
71 3vk6_A E3 ubiquitin-protein li 97.6 3.4E-05 1.2E-09 69.2 3.6 46 650-697 3-49 (101)
72 3nw0_A Non-structural maintena 97.3 0.00013 4.3E-09 74.4 3.7 49 647-697 179-229 (238)
73 2ko5_A Ring finger protein Z; 95.8 0.0038 1.3E-07 55.4 2.4 48 646-698 26-74 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 93.4 0.034 1.2E-06 48.3 2.5 36 647-682 2-38 (101)
75 2lri_C Autoimmune regulator; Z 89.8 0.23 7.9E-06 41.1 3.5 48 646-696 10-61 (66)
76 1wil_A KIAA1045 protein; ring 85.7 0.68 2.3E-05 40.5 4.0 36 645-681 12-47 (89)
77 1we9_A PHD finger family prote 85.6 0.18 6.3E-06 40.7 0.4 53 645-697 3-61 (64)
78 3i2d_A E3 SUMO-protein ligase 84.6 0.5 1.7E-05 51.1 3.3 48 648-697 249-300 (371)
79 2l5u_A Chromodomain-helicase-D 82.9 0.63 2.2E-05 37.6 2.5 47 645-694 8-58 (61)
80 2k16_A Transcription initiatio 81.3 0.33 1.1E-05 40.4 0.3 52 645-696 15-70 (75)
81 1f62_A Transcription factor WS 80.5 0.75 2.6E-05 35.4 2.0 44 650-693 2-49 (51)
82 3m62_A Ubiquitin conjugation f 79.5 0.95 3.2E-05 54.3 3.4 49 646-697 889-938 (968)
83 4fo9_A E3 SUMO-protein ligase 77.7 1.3 4.3E-05 47.9 3.4 48 648-697 215-266 (360)
84 1mm2_A MI2-beta; PHD, zinc fin 76.6 0.49 1.7E-05 38.2 -0.1 49 645-696 6-58 (61)
85 1wem_A Death associated transc 75.3 0.96 3.3E-05 37.7 1.4 49 649-698 17-74 (76)
86 1wep_A PHF8; structural genomi 74.3 2.3 7.8E-05 35.8 3.4 47 648-695 12-64 (79)
87 2cs3_A Protein C14ORF4, MY039 72.2 5.2 0.00018 34.8 5.1 47 646-695 13-68 (93)
88 2yql_A PHD finger protein 21A; 72.0 0.36 1.2E-05 38.3 -2.0 47 644-693 5-55 (56)
89 2ysm_A Myeloid/lymphoid or mix 72.0 1 3.5E-05 40.0 0.8 38 646-683 5-42 (111)
90 1wew_A DNA-binding family prot 71.4 1.2 4.1E-05 37.5 1.0 52 647-699 15-77 (78)
91 2kgg_A Histone demethylase jar 70.6 2.8 9.7E-05 32.6 2.9 43 650-692 4-52 (52)
92 2lv9_A Histone-lysine N-methyl 70.3 1.3 4.5E-05 39.0 1.0 46 648-694 28-76 (98)
93 2yt5_A Metal-response element- 70.2 0.68 2.3E-05 37.5 -0.8 52 645-696 3-63 (66)
94 3v43_A Histone acetyltransfera 67.4 5.9 0.0002 35.4 4.7 33 647-679 4-42 (112)
95 1weu_A Inhibitor of growth fam 66.2 2.4 8.2E-05 37.3 1.9 47 647-697 35-88 (91)
96 1wee_A PHD finger family prote 66.1 0.54 1.9E-05 39.0 -2.2 53 646-699 14-71 (72)
97 1fp0_A KAP-1 corepressor; PHD 65.2 2.4 8.2E-05 37.1 1.7 49 644-695 21-73 (88)
98 1xwh_A Autoimmune regulator; P 61.8 0.74 2.5E-05 37.6 -2.1 46 646-694 6-55 (66)
99 2vpb_A Hpygo1, pygopus homolog 61.4 5.8 0.0002 32.5 3.2 34 645-678 5-40 (65)
100 2ku3_A Bromodomain-containing 61.1 2.6 8.8E-05 35.2 1.1 50 645-694 13-66 (71)
101 2lbm_A Transcriptional regulat 61.0 8.7 0.0003 36.3 4.8 47 645-694 60-117 (142)
102 2e6r_A Jumonji/ARID domain-con 61.0 0.66 2.3E-05 40.6 -2.7 49 645-693 13-65 (92)
103 2l43_A N-teminal domain from h 60.0 2.7 9.4E-05 36.4 1.1 50 646-695 23-76 (88)
104 1wev_A Riken cDNA 1110020M19; 59.2 0.95 3.3E-05 39.2 -2.0 49 647-695 15-73 (88)
105 1wen_A Inhibitor of growth fam 58.9 4.6 0.00016 33.7 2.2 46 647-696 15-67 (71)
106 2ri7_A Nucleosome-remodeling f 58.8 2 6.7E-05 40.9 -0.1 46 647-693 7-58 (174)
107 3o70_A PHD finger protein 13; 58.0 1.4 4.9E-05 36.4 -1.0 48 646-694 17-67 (68)
108 2puy_A PHD finger protein 21A; 56.4 1.5 5.1E-05 35.1 -1.2 47 646-695 3-53 (60)
109 1z60_A TFIIH basal transcripti 52.3 5.2 0.00018 32.6 1.4 44 649-692 16-59 (59)
110 3v43_A Histone acetyltransfera 48.9 4.2 0.00014 36.3 0.4 44 650-693 63-111 (112)
111 1zbd_B Rabphilin-3A; G protein 48.0 7.3 0.00025 36.3 1.9 34 646-679 53-88 (134)
112 1weo_A Cellulose synthase, cat 46.9 24 0.00083 31.1 4.8 50 647-696 15-69 (93)
113 3ql9_A Transcriptional regulat 46.9 16 0.00056 33.9 4.1 47 644-694 53-111 (129)
114 2ysm_A Myeloid/lymphoid or mix 45.6 3 0.0001 37.0 -1.1 50 650-699 56-109 (111)
115 2d8v_A Zinc finger FYVE domain 45.4 9.6 0.00033 31.8 2.0 32 646-681 6-38 (67)
116 2xb1_A Pygopus homolog 2, B-ce 42.6 10 0.00035 33.8 1.9 48 648-695 3-62 (105)
117 3ask_A E3 ubiquitin-protein li 42.1 5 0.00017 40.7 -0.2 47 648-694 174-225 (226)
118 3shb_A E3 ubiquitin-protein li 41.2 3.4 0.00012 35.1 -1.4 44 650-693 28-76 (77)
119 2yw8_A RUN and FYVE domain-con 40.7 12 0.00042 31.6 2.0 36 646-681 17-53 (82)
120 2kwj_A Zinc finger protein DPF 39.3 13 0.00043 33.4 2.0 33 649-681 2-41 (114)
121 2e6s_A E3 ubiquitin-protein li 39.0 6.2 0.00021 33.4 -0.1 46 648-693 26-76 (77)
122 2rsd_A E3 SUMO-protein ligase 37.9 2.2 7.6E-05 35.0 -2.9 44 649-693 11-64 (68)
123 4gne_A Histone-lysine N-methyl 36.5 15 0.0005 33.1 1.9 44 644-693 11-61 (107)
124 3mpx_A FYVE, rhogef and PH dom 36.2 7.5 0.00026 41.4 0.0 49 647-695 374-430 (434)
125 2kwj_A Zinc finger protein DPF 36.0 2.1 7.1E-05 38.5 -3.7 49 650-698 60-112 (114)
126 1wfk_A Zinc finger, FYVE domai 35.3 19 0.00064 31.1 2.3 36 646-681 7-43 (88)
127 1z2q_A LM5-1; membrane protein 35.0 19 0.00065 30.5 2.3 37 645-681 18-55 (84)
128 1y02_A CARP2, FYVE-ring finger 34.8 4 0.00014 37.5 -2.1 46 647-692 18-64 (120)
129 3asl_A E3 ubiquitin-protein li 34.6 6.4 0.00022 32.6 -0.7 45 650-694 20-69 (70)
130 3c6w_A P28ING5, inhibitor of g 34.1 4 0.00014 32.8 -1.9 42 648-693 9-57 (59)
131 1dvp_A HRS, hepatocyte growth 34.0 14 0.00049 36.3 1.6 35 647-681 160-195 (220)
132 1joc_A EEA1, early endosomal a 33.8 16 0.00056 33.3 1.9 36 646-681 67-103 (125)
133 3t7l_A Zinc finger FYVE domain 33.4 17 0.0006 31.3 1.9 36 647-682 19-55 (90)
134 3zyq_A Hepatocyte growth facto 33.4 15 0.00052 36.6 1.7 36 647-682 163-199 (226)
135 1x64_A Alpha-actinin-2 associa 33.4 31 0.0011 28.8 3.4 41 646-697 23-63 (89)
136 1x4u_A Zinc finger, FYVE domai 33.4 20 0.00068 30.4 2.2 36 646-681 12-48 (84)
137 2cu8_A Cysteine-rich protein 2 32.9 14 0.00049 29.8 1.2 40 648-697 9-48 (76)
138 2pv0_B DNA (cytosine-5)-methyl 32.8 35 0.0012 37.1 4.4 48 644-694 89-148 (386)
139 1vfy_A Phosphatidylinositol-3- 32.6 20 0.0007 29.5 2.1 34 648-681 11-45 (73)
140 3kv5_D JMJC domain-containing 32.3 7.6 0.00026 43.3 -0.8 48 647-694 35-88 (488)
141 2zet_C Melanophilin; complex, 32.1 15 0.0005 35.0 1.3 46 647-693 67-116 (153)
142 2co8_A NEDD9 interacting prote 31.5 20 0.0007 29.6 1.9 42 646-697 13-54 (82)
143 2gmg_A Hypothetical protein PF 30.9 9.1 0.00031 34.6 -0.4 25 666-695 70-94 (105)
144 1iml_A CRIP, cysteine rich int 30.1 13 0.00044 30.1 0.4 45 647-695 26-71 (76)
145 1x62_A C-terminal LIM domain p 29.9 26 0.0009 28.5 2.3 38 647-695 14-51 (79)
146 2vnf_A ING 4, P29ING4, inhibit 28.8 5.8 0.0002 31.9 -1.8 41 649-693 11-58 (60)
147 3kqi_A GRC5, PHD finger protei 28.8 11 0.00037 31.3 -0.2 48 647-694 8-61 (75)
148 2dj7_A Actin-binding LIM prote 28.5 22 0.00075 29.4 1.6 40 647-696 14-53 (80)
149 3a1b_A DNA (cytosine-5)-methyl 28.1 43 0.0015 32.3 3.7 48 643-694 74-134 (159)
150 2dar_A PDZ and LIM domain prot 27.3 25 0.00084 29.4 1.7 39 647-696 24-62 (90)
151 2jvx_A NF-kappa-B essential mo 26.4 14 0.00049 25.9 0.1 13 685-697 3-15 (28)
152 1m3v_A FLIN4, fusion of the LI 26.2 51 0.0017 29.2 3.7 49 649-697 33-81 (122)
153 3o7a_A PHD finger protein 13 v 26.0 8.5 0.00029 29.8 -1.3 42 652-693 7-51 (52)
154 2jmi_A Protein YNG1, ING1 homo 25.2 10 0.00036 33.1 -1.0 43 647-693 25-75 (90)
155 1x63_A Skeletal muscle LIM-pro 24.0 42 0.0014 27.2 2.5 40 649-697 16-55 (82)
156 2d8z_A Four and A half LIM dom 23.6 33 0.0011 27.0 1.8 11 670-680 51-61 (70)
157 2d8x_A Protein pinch; LIM doma 23.4 36 0.0012 26.8 2.0 31 649-681 32-62 (70)
158 2o35_A Hypothetical protein DU 23.3 30 0.001 31.1 1.5 11 673-683 43-53 (105)
159 4g9i_A Hydrogenase maturation 23.1 27 0.00094 41.0 1.6 48 647-694 105-187 (772)
160 3fyb_A Protein of unknown func 23.0 30 0.001 31.0 1.5 11 673-683 42-52 (104)
161 1x4l_A Skeletal muscle LIM-pro 22.4 38 0.0013 26.8 1.9 39 649-696 6-46 (72)
162 1wd2_A Ariadne-1 protein homol 22.0 14 0.0005 29.7 -0.7 38 648-685 6-48 (60)
163 3ttc_A HYPF, transcriptional r 21.5 31 0.0011 39.9 1.6 49 647-695 16-99 (657)
164 1wyh_A SLIM 2, skeletal muscle 21.4 42 0.0014 26.4 2.0 27 650-677 7-33 (72)
165 1x4k_A Skeletal muscle LIM-pro 21.4 49 0.0017 26.1 2.3 38 650-696 7-44 (72)
166 2cor_A Pinch protein; LIM doma 21.2 49 0.0017 27.0 2.4 39 647-696 14-52 (79)
167 1x61_A Thyroid receptor intera 20.9 45 0.0015 26.3 2.1 34 648-683 33-66 (72)
168 2cur_A Skeletal muscle LIM-pro 20.3 39 0.0013 26.6 1.5 32 649-682 32-63 (69)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.49 E-value=2.3e-14 Score=124.58 Aligned_cols=76 Identities=28% Similarity=0.604 Sum_probs=61.7
Q ss_pred CCCCCHHHHHHhhhhcceecccCCCCCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 621 STGLTEETIKNRLKQQKYSISLGSQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 621 stgLsee~Iik~Lk~~ky~~~~~~~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
..+++++.+ +.++..++........++..|+||+++|..++.+..|+|+|.||..||.+||+.+..||+||+.+.+
T Consensus 14 ~~~~s~~~i-~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 14 NPPASKESI-DALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp CCCCCHHHH-HTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCHHHH-HhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 456666655 4566666654444456678899999999998888899999999999999999999999999998865
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=1.2e-13 Score=115.12 Aligned_cols=56 Identities=32% Similarity=0.855 Sum_probs=50.3
Q ss_pred CCCCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcCCCC
Q 005363 644 SQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALSTS 699 (700)
Q Consensus 644 ~~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll~tS 699 (700)
...++..|+||+++|..++.+..++|+|.||..||.+||+.+..||+||+.+.+.+
T Consensus 19 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 74 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPSS 74 (75)
T ss_dssp CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCCC
T ss_pred ccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCCC
Confidence 34566789999999999988889999999999999999999999999999987753
No 3
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.5e-13 Score=112.65 Aligned_cols=54 Identities=31% Similarity=0.896 Sum_probs=49.0
Q ss_pred CCCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcCCC
Q 005363 645 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALST 698 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll~t 698 (700)
...+..|+||+++|..++.+..++|+|.||..||.+|++.+..||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 345678999999999999888899999999999999999999999999998764
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.37 E-value=5.1e-13 Score=109.33 Aligned_cols=55 Identities=36% Similarity=0.862 Sum_probs=48.9
Q ss_pred CCCCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcCCC
Q 005363 644 SQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALST 698 (700)
Q Consensus 644 ~~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll~t 698 (700)
....+..|+||++.|..+..+..++|+|.||..||.+|++.+..||+||+.+...
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 3456678999999999888888999999999999999999999999999987653
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.36 E-value=2.8e-13 Score=106.00 Aligned_cols=51 Identities=37% Similarity=1.024 Sum_probs=46.4
Q ss_pred CCCCccccccCccCCCCceEEec-cCCcccHHHHHHHHhcCCCCCCcCcCcC
Q 005363 646 QEQEPCCICQEEYNDGEDTGILH-CGHDFHTSCIKQWLMHKNLCPICKTTAL 696 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~Lp-CGHiFH~~CI~qWL~~knsCPICR~~Ll 696 (700)
+++..|+||+++|..++.+..++ |+|.||..||.+|++.+..||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 45678999999999988888887 9999999999999999999999999874
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.35 E-value=4e-13 Score=112.47 Aligned_cols=55 Identities=35% Similarity=0.817 Sum_probs=49.1
Q ss_pred CCCCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcCCC
Q 005363 644 SQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALST 698 (700)
Q Consensus 644 ~~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll~t 698 (700)
....+..|+||++.|..++.+..++|+|.||..||.+|++.+..||+||+.+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 3456778999999999998888899999999999999999999999999988653
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.29 E-value=2.6e-12 Score=114.89 Aligned_cols=51 Identities=29% Similarity=0.571 Sum_probs=41.6
Q ss_pred CCCccccccCccCCCC---------------ceEEeccCCcccHHHHHHHHh-----cCCCCCCcCcCcCC
Q 005363 647 EQEPCCICQEEYNDGE---------------DTGILHCGHDFHTSCIKQWLM-----HKNLCPICKTTALS 697 (700)
Q Consensus 647 ed~~C~ICLEef~~~d---------------el~~LpCGHiFH~~CI~qWL~-----~knsCPICR~~Ll~ 697 (700)
.++.|+||+++|..+. .+..++|+|.||..||.+||. .+.+||+||+.+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 4568999999997654 234679999999999999994 56789999997753
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.26 E-value=3.5e-12 Score=99.55 Aligned_cols=51 Identities=27% Similarity=0.669 Sum_probs=44.2
Q ss_pred CCCCccccccCccCCCC-ceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcC
Q 005363 646 QEQEPCCICQEEYNDGE-DTGILHCGHDFHTSCIKQWLMHKNLCPICKTTAL 696 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~d-el~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll 696 (700)
.++..|+||++.|.+.+ .+..++|+|.||..||.+|++.+..||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 35678999999997654 4667799999999999999999999999999874
No 9
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=3.8e-12 Score=108.60 Aligned_cols=52 Identities=29% Similarity=0.806 Sum_probs=42.1
Q ss_pred CCCCccccccCccCC-----------CCceEEe-ccCCcccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 646 QEQEPCCICQEEYND-----------GEDTGIL-HCGHDFHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 646 ~ed~~C~ICLEef~~-----------~del~~L-pCGHiFH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
.+++.|+||+++|.+ .+.++.+ +|+|.||.+||.+||+.+.+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 456678888888865 3445555 599999999999999999999999998753
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.23 E-value=3.3e-12 Score=104.47 Aligned_cols=53 Identities=26% Similarity=0.614 Sum_probs=45.8
Q ss_pred CCCCccccccCccCCC----CceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcCCC
Q 005363 646 QEQEPCCICQEEYNDG----EDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALST 698 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~----del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll~t 698 (700)
.++..|+||++.|.++ ..+..++|||.||..||.+|++.+..||+||+.+...
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 4667899999999764 4456789999999999999999999999999988653
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=4.3e-12 Score=102.89 Aligned_cols=53 Identities=26% Similarity=0.612 Sum_probs=45.3
Q ss_pred CCCCCccccccCccCCC----CceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 645 QQEQEPCCICQEEYNDG----EDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~~----del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
..+...|+||++.|.++ ..+..++|||.||..||.+|++.+..||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 45677899999999865 234678999999999999999999999999998753
No 12
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=7e-12 Score=103.56 Aligned_cols=49 Identities=22% Similarity=0.445 Sum_probs=43.3
Q ss_pred CCCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcC
Q 005363 645 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTAL 696 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll 696 (700)
..++..|+||++.+.++. .++|||.||..||.+|+..+..||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~---~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPV---SLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSSCCBCSSSSSBCSSEE---EETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCCCccCCcccCCCE---EccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 456678999999987654 7899999999999999999999999999875
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.18 E-value=8.2e-12 Score=99.79 Aligned_cols=52 Identities=27% Similarity=0.623 Sum_probs=44.7
Q ss_pred CCCccccccCccCCC----CceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcCCC
Q 005363 647 EQEPCCICQEEYNDG----EDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALST 698 (700)
Q Consensus 647 ed~~C~ICLEef~~~----del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll~t 698 (700)
++..|+||++.|.++ ..+..++|||.||..||.+|++.+..||+||+.+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 456899999999764 3456789999999999999999999999999987653
No 14
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.17 E-value=1.9e-11 Score=110.30 Aligned_cols=51 Identities=27% Similarity=0.634 Sum_probs=43.8
Q ss_pred CCCCCccccccCccCCCC---------------ceEEeccCCcccHHHHHHHHhcCCCCCCcCcCc
Q 005363 645 QQEQEPCCICQEEYNDGE---------------DTGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 695 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~~d---------------el~~LpCGHiFH~~CI~qWL~~knsCPICR~~L 695 (700)
..+++.|+||++.|.... .+..++|+|.||..||.+||+.+.+||+||+..
T Consensus 34 d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 34 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp SSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 346788999999998651 256679999999999999999999999999974
No 15
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.9e-11 Score=101.21 Aligned_cols=52 Identities=29% Similarity=0.564 Sum_probs=44.6
Q ss_pred CCCCCCccccccCccCCCCceEEe-ccCCcccHHHHHHHHhcCCCCCCcCcCcCCC
Q 005363 644 SQQEQEPCCICQEEYNDGEDTGIL-HCGHDFHTSCIKQWLMHKNLCPICKTTALST 698 (700)
Q Consensus 644 ~~~ed~~C~ICLEef~~~del~~L-pCGHiFH~~CI~qWL~~knsCPICR~~Ll~t 698 (700)
...++..|+||++.|.++. .+ +|||.||..||.+|++.+..||+||+.+...
T Consensus 11 ~~~~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDAT---TITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CCCGGGSCTTTSSCCSSCE---ECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred hcCCCCCCCCCChHHHCcC---EECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 3456778999999998754 55 9999999999999999999999999987653
No 16
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=3.6e-11 Score=101.99 Aligned_cols=54 Identities=28% Similarity=0.680 Sum_probs=45.6
Q ss_pred CCCCCCccccccCccCCCCc-eEEeccCCcccHHHHHHHHhcC---CCCCCcCcCcCC
Q 005363 644 SQQEQEPCCICQEEYNDGED-TGILHCGHDFHTSCIKQWLMHK---NLCPICKTTALS 697 (700)
Q Consensus 644 ~~~ed~~C~ICLEef~~~de-l~~LpCGHiFH~~CI~qWL~~k---nsCPICR~~Ll~ 697 (700)
...+...|+||++.|.+.+. ...++|||.||..||.+|++.+ ..||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 34566789999999988664 5678999999999999999976 789999997654
No 17
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=2.7e-11 Score=102.36 Aligned_cols=49 Identities=22% Similarity=0.546 Sum_probs=43.2
Q ss_pred CCCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcC
Q 005363 645 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTAL 696 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll 696 (700)
......|+||++.|.++. .++|||.||..||.+|++....||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPV---VTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSEE---ECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcCee---EccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 345678999999997754 7899999999999999999999999999875
No 18
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=1.3e-11 Score=101.25 Aligned_cols=50 Identities=36% Similarity=0.898 Sum_probs=44.2
Q ss_pred CCCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcCCC
Q 005363 645 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALST 698 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll~t 698 (700)
..+...|+||++.+.+ ..++|||.||..||.+|+..+..||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 3566789999999877 5889999999999999999999999999988754
No 19
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.12 E-value=2.4e-11 Score=98.91 Aligned_cols=50 Identities=34% Similarity=0.720 Sum_probs=43.1
Q ss_pred CCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
+.+..|+||++.+.++. ..++|||.||..||.+|++.+..||+||+.+..
T Consensus 3 ~~~~~C~IC~~~~~~~~--~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNYS--MALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSCE--EETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCc--EecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 34668999999987643 578999999999999999999999999998753
No 20
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=5.1e-11 Score=98.07 Aligned_cols=51 Identities=33% Similarity=0.619 Sum_probs=43.1
Q ss_pred CCCCCccccccCccCCCCceEEeccCCcccHHHHHHHHh---cCCCCCCcCcCcCCC
Q 005363 645 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM---HKNLCPICKTTALST 698 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~---~knsCPICR~~Ll~t 698 (700)
..++..|+||++.|.++. .++|||.||..||.+|++ .+..||+||+.+...
T Consensus 17 ~~~~~~C~IC~~~~~~~~---~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPV---TIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCBCTTTCSBCSSEE---ECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred CccCCEeccCCcccCCeE---EcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 356778999999998654 779999999999999997 456899999988654
No 21
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=4.8e-11 Score=102.58 Aligned_cols=54 Identities=30% Similarity=0.664 Sum_probs=44.9
Q ss_pred CCCCCCCccccccCccCCCCceEEeccC-----CcccHHHHHHHHhcCC--CCCCcCcCcCC
Q 005363 643 GSQQEQEPCCICQEEYNDGEDTGILHCG-----HDFHTSCIKQWLMHKN--LCPICKTTALS 697 (700)
Q Consensus 643 ~~~~ed~~C~ICLEef~~~del~~LpCG-----HiFH~~CI~qWL~~kn--sCPICR~~Ll~ 697 (700)
....++..|.||+++|.+++.+ ++||+ |.||.+||++||..+. +||+||+.+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 10 ITPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CCCTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 3445667899999999877765 58996 9999999999999764 89999998764
No 22
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.09 E-value=5e-11 Score=99.46 Aligned_cols=51 Identities=25% Similarity=0.741 Sum_probs=43.4
Q ss_pred CCCCCCccccccCccCCCCceEEec-cCCcccHHHHHHHHhcC--CCCCCcCcCcCC
Q 005363 644 SQQEQEPCCICQEEYNDGEDTGILH-CGHDFHTSCIKQWLMHK--NLCPICKTTALS 697 (700)
Q Consensus 644 ~~~ed~~C~ICLEef~~~del~~Lp-CGHiFH~~CI~qWL~~k--nsCPICR~~Ll~ 697 (700)
...++..|+||++.|.++. .++ |||.||..||.+|++.+ ..||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDAV---VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CSCGGGSCSSSCCCCTTCE---ECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred cCCCCCCCcCCChHHhCCe---EcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 3456678999999998776 788 99999999999999865 689999998653
No 23
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.09 E-value=2.8e-11 Score=112.50 Aligned_cols=48 Identities=35% Similarity=0.882 Sum_probs=42.4
Q ss_pred CCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 647 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 647 ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
++..|+||++.|.++. .++|||.||..||.+|+..+..||+||+.+..
T Consensus 52 ~~~~C~iC~~~~~~~~---~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIEAV---TLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSSEE---EETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred ccCCCcccCcccCCce---ECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 3457999999997754 88999999999999999999999999998753
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=6.3e-11 Score=96.33 Aligned_cols=50 Identities=22% Similarity=0.551 Sum_probs=43.4
Q ss_pred CCCCccccccCccCCCCceEEeccCCcccHHHHHHHHh-cCCCCCCcCcCcCCC
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM-HKNLCPICKTTALST 698 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~-~knsCPICR~~Ll~t 698 (700)
.+...|+||++.+.++. .++|||.||..||.+|+. .+..||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPK---QTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEESSCC---CCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhcCee---ECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 45678999999998877 589999999999999995 567899999998654
No 25
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.06 E-value=1.2e-10 Score=97.55 Aligned_cols=50 Identities=28% Similarity=0.578 Sum_probs=43.7
Q ss_pred CCCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhc------CCCCCCcCcCcCC
Q 005363 645 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH------KNLCPICKTTALS 697 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~------knsCPICR~~Ll~ 697 (700)
..++..|+||++.|.++. .++|||.||..||.+|+.. ...||+||+.+..
T Consensus 16 ~~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPV---SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCTTTSCTTTCSCCSSCE---ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CccCCCCcCCChhhCcce---eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 346678999999998876 7899999999999999997 6789999998764
No 26
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.05 E-value=1e-10 Score=97.71 Aligned_cols=49 Identities=31% Similarity=0.518 Sum_probs=43.3
Q ss_pred CCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhc-CCCCCCcCcCcCC
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH-KNLCPICKTTALS 697 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~-knsCPICR~~Ll~ 697 (700)
.++..|+||++.|.++. .++|||.||..||.+|+.. +..||+||+.+..
T Consensus 6 ~~~~~C~IC~~~~~~Pv---~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPV---IVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSSEE---EETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccCCE---EcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 46778999999998775 7899999999999999987 7789999998754
No 27
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.5e-10 Score=96.96 Aligned_cols=50 Identities=28% Similarity=0.663 Sum_probs=43.7
Q ss_pred CCCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhc------CCCCCCcCcCcCC
Q 005363 645 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH------KNLCPICKTTALS 697 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~------knsCPICR~~Ll~ 697 (700)
..+...|+||++.|.++. .++|||.||..||.+|+.. ...||+||+.+..
T Consensus 16 ~~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPL---SLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCTTTCSCCSSCB---CCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred ccCCCCCCCCCcccCCce---eCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 346678999999998765 6799999999999999987 7889999998764
No 28
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.02 E-value=2.6e-11 Score=111.45 Aligned_cols=51 Identities=29% Similarity=0.695 Sum_probs=2.2
Q ss_pred CCCCCccccccCccCCC-------------Cc--eEEeccCCcccHHHHHHHHhcCCCCCCcCcCc
Q 005363 645 QQEQEPCCICQEEYNDG-------------ED--TGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 695 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~~-------------de--l~~LpCGHiFH~~CI~qWL~~knsCPICR~~L 695 (700)
...++.|+||+++|.+. ++ +..++|+|.||..||.+||+.+.+||+||+..
T Consensus 45 d~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 45 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp CCCC--------------------------------------------------------------
T ss_pred cCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 44668899999999763 22 23358999999999999999999999999974
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=2.1e-10 Score=92.24 Aligned_cols=45 Identities=33% Similarity=0.660 Sum_probs=38.7
Q ss_pred CCCCCCccccccCccCCCCceEEeccCCcccHHHHHHHHh---cCCCCCCc
Q 005363 644 SQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM---HKNLCPIC 691 (700)
Q Consensus 644 ~~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~---~knsCPIC 691 (700)
...++..|+||++.|.++. .++|||.||..||.+|++ .+..||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPV---TIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCE---ECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeE---EeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3456778999999998765 779999999999999998 45689998
No 30
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.01 E-value=7.5e-11 Score=104.06 Aligned_cols=49 Identities=33% Similarity=0.749 Sum_probs=42.2
Q ss_pred CCCCccccccCccCCCCceEE-eccCCcccHHHHHHHHhcC-CCCCCcCcCcCC
Q 005363 646 QEQEPCCICQEEYNDGEDTGI-LHCGHDFHTSCIKQWLMHK-NLCPICKTTALS 697 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~-LpCGHiFH~~CI~qWL~~k-nsCPICR~~Ll~ 697 (700)
.++..|+||++.|.++. . ++|||.||..||.+|+..+ ..||+||+.+..
T Consensus 20 ~~~~~C~IC~~~~~~p~---~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDAR---LCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHHTBCTTTCSBCSSEE---ECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCccCCccccCcc---ccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 35567999999998654 6 8999999999999999987 699999998753
No 31
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.01 E-value=7.1e-11 Score=98.46 Aligned_cols=50 Identities=32% Similarity=0.604 Sum_probs=43.3
Q ss_pred CCCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhc-------CCCCCCcCcCcCC
Q 005363 645 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH-------KNLCPICKTTALS 697 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~-------knsCPICR~~Ll~ 697 (700)
..++..|+||++.|.++. .++|||.||..||.+|+.. ...||+||+.+..
T Consensus 9 ~~~~~~C~IC~~~~~~p~---~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 9 VQEEVTCPICLELLTEPL---SLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCEETTTTEECSSCC---CCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cccCCCCcCCCcccCCee---ECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 356778999999998876 6899999999999999986 5689999998754
No 32
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.98 E-value=1.3e-10 Score=101.62 Aligned_cols=48 Identities=33% Similarity=0.765 Sum_probs=42.0
Q ss_pred CCCccccccCccCCCCceEEe-ccCCcccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 647 EQEPCCICQEEYNDGEDTGIL-HCGHDFHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 647 ed~~C~ICLEef~~~del~~L-pCGHiFH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
+...|+||++.|.++. .+ +|||.||..||.+|+..+..||+||+.+..
T Consensus 21 ~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAM---IIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEE---ECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcC---EECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 4567999999998754 55 899999999999999999999999998753
No 33
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.98 E-value=1.8e-10 Score=103.89 Aligned_cols=52 Identities=27% Similarity=0.625 Sum_probs=45.2
Q ss_pred CCCCccccccCccCCC----CceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 646 QEQEPCCICQEEYNDG----EDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~----del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
.++..|+||++.|.++ ..+..++|||.||..||.+||+.+..||+||+.+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 3567899999999875 345688999999999999999999999999998764
No 34
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.98 E-value=2.2e-10 Score=101.90 Aligned_cols=49 Identities=27% Similarity=0.706 Sum_probs=43.1
Q ss_pred CCCCccccccCccCCCCceEEe-ccCCcccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 646 QEQEPCCICQEEYNDGEDTGIL-HCGHDFHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~L-pCGHiFH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
.++..|+||++.|.++. .+ +|||.||..||.+|+..+..||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDAT---TIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGGTBCTTTSSBCSSEE---EETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CCcCCCccCChHHhCcC---EeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 45678999999997754 66 999999999999999999999999998764
No 35
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.98 E-value=2.6e-10 Score=98.13 Aligned_cols=49 Identities=24% Similarity=0.744 Sum_probs=42.3
Q ss_pred CCCCCCccccccCccCCCCceEEec-cCCcccHHHHHHHHhcC--CCCCCcCcCc
Q 005363 644 SQQEQEPCCICQEEYNDGEDTGILH-CGHDFHTSCIKQWLMHK--NLCPICKTTA 695 (700)
Q Consensus 644 ~~~ed~~C~ICLEef~~~del~~Lp-CGHiFH~~CI~qWL~~k--nsCPICR~~L 695 (700)
...++..|+||++.|.++. .++ |||.||..||.+|+... ..||+||+.+
T Consensus 9 ~~~~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAV---VIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCCTTTEETTTTEECSSCE---ECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cCCcCCCCCCCChhhcCce---ECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 3456788999999998776 888 99999999999999754 5899999986
No 36
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=3.4e-10 Score=88.99 Aligned_cols=44 Identities=34% Similarity=0.948 Sum_probs=37.8
Q ss_pred CCCCCccccccCccCCCCceEEeccCCcccHHHHHHHHh---cCCCCCCc
Q 005363 645 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM---HKNLCPIC 691 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~---~knsCPIC 691 (700)
..+...|+||++.|.++. .++|||.||..||.+|+. .+..||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEPV---IIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSCC---CCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCccE---eCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 346678999999998876 689999999999999954 56789998
No 37
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.95 E-value=2.2e-10 Score=104.19 Aligned_cols=48 Identities=23% Similarity=0.443 Sum_probs=41.6
Q ss_pred CCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCC-CCCCcCcCcCC
Q 005363 647 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKN-LCPICKTTALS 697 (700)
Q Consensus 647 ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~kn-sCPICR~~Ll~ 697 (700)
++..|+||++.|.++. .++|||.||..||.+|+..+. .||+||+.+..
T Consensus 51 ~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPI---TTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEE---ECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcE---EeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4567999999998765 789999999999999998554 89999998864
No 38
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.90 E-value=7.3e-10 Score=98.13 Aligned_cols=47 Identities=30% Similarity=0.601 Sum_probs=41.1
Q ss_pred CCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCC---CCCCcCcCcCC
Q 005363 648 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKN---LCPICKTTALS 697 (700)
Q Consensus 648 d~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~kn---sCPICR~~Ll~ 697 (700)
...|+||++.|.++. .++|||.||..||.+|+..+. .||+||+.+..
T Consensus 21 ~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEPV---STKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSCC---BCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCeE---ECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 457999999998776 689999999999999999764 89999998764
No 39
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.89 E-value=1.1e-09 Score=88.78 Aligned_cols=52 Identities=23% Similarity=0.590 Sum_probs=42.0
Q ss_pred CCCccccccC-ccCCCCce-EEeccCCcccHHHHHHHHhc-CCCCCCcCcCcCCC
Q 005363 647 EQEPCCICQE-EYNDGEDT-GILHCGHDFHTSCIKQWLMH-KNLCPICKTTALST 698 (700)
Q Consensus 647 ed~~C~ICLE-ef~~~del-~~LpCGHiFH~~CI~qWL~~-knsCPICR~~Ll~t 698 (700)
++..|+||++ .|.++... ..++|||.||..||.+|+.. +..||+||+.+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 4567999999 78777643 35699999999999999775 46799999988643
No 40
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.88 E-value=6.7e-10 Score=105.74 Aligned_cols=47 Identities=26% Similarity=0.581 Sum_probs=40.8
Q ss_pred CCCccccccCccCCCCceEEe-ccCCcccHHHHHHHHhc-CCCCCCcCcCcC
Q 005363 647 EQEPCCICQEEYNDGEDTGIL-HCGHDFHTSCIKQWLMH-KNLCPICKTTAL 696 (700)
Q Consensus 647 ed~~C~ICLEef~~~del~~L-pCGHiFH~~CI~qWL~~-knsCPICR~~Ll 696 (700)
+...|+||++.|.++. .+ +|||.||..||.+|+.. +..||+||+.+.
T Consensus 53 ~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKNTM---TTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSSEE---EETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCcccChHhhCcC---EeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 4568999999998754 55 99999999999999997 778999999874
No 41
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.88 E-value=5.9e-10 Score=105.71 Aligned_cols=49 Identities=20% Similarity=0.454 Sum_probs=42.2
Q ss_pred CCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCC-CCCCcCcCcCCC
Q 005363 647 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKN-LCPICKTTALST 698 (700)
Q Consensus 647 ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~kn-sCPICR~~Ll~t 698 (700)
+...|+||++.|.++. .++|||.||..||.+|+.... .||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~pv---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPV---TTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEE---ECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCE---EcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 3457999999998766 789999999999999999765 799999988653
No 42
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.86 E-value=1.6e-09 Score=92.29 Aligned_cols=50 Identities=22% Similarity=0.575 Sum_probs=42.5
Q ss_pred CCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcC--CCCCCcCcCcCC
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK--NLCPICKTTALS 697 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~k--nsCPICR~~Ll~ 697 (700)
+....|.||++.+..++ ....|+|.||..||.+||+.+ .+||+||+....
T Consensus 13 ~~i~~C~IC~~~i~~g~--~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCSSSE--ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHcccCC--ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 45678999999998765 334899999999999999977 889999998654
No 43
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.85 E-value=2.8e-10 Score=102.10 Aligned_cols=48 Identities=23% Similarity=0.549 Sum_probs=41.7
Q ss_pred CCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhc-CCCCCCcCcCcC
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH-KNLCPICKTTAL 696 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~-knsCPICR~~Ll 696 (700)
.++..|+||++.|.++. .++|||.||..||.+|+.. +..||+||+.+.
T Consensus 13 ~~~~~C~iC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEILVEPV---TLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBCSSCE---ECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCccCCcccCcee---EcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 44678999999998766 7899999999999999986 668999999864
No 44
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.84 E-value=1.2e-09 Score=98.55 Aligned_cols=52 Identities=27% Similarity=0.625 Sum_probs=44.9
Q ss_pred CCCCccccccCccCCC----CceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 646 QEQEPCCICQEEYNDG----EDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~----del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
.+...|+||++.|.+. .....++|||.||..||.+||+.+++||+||+.+..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 4667899999999764 234678999999999999999999999999998865
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.83 E-value=1e-09 Score=99.21 Aligned_cols=51 Identities=24% Similarity=0.526 Sum_probs=43.6
Q ss_pred CCCCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCC-CCCCcCcCcCC
Q 005363 644 SQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKN-LCPICKTTALS 697 (700)
Q Consensus 644 ~~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~kn-sCPICR~~Ll~ 697 (700)
...++..|+||++.+.++. .++|||.||..||.+|+..+. .||+||+.+..
T Consensus 14 ~~~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 14 PLESKYECPICLMALREAV---QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcCChhhcCeE---ECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 3456678999999998764 789999999999999999765 89999998764
No 46
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.82 E-value=2.2e-09 Score=92.59 Aligned_cols=49 Identities=14% Similarity=0.093 Sum_probs=44.2
Q ss_pred CCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
.+...|+||++.|.++. .++|||.||+.||.+|+....+||+||..+..
T Consensus 12 p~~~~CpI~~~~m~dPV---~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPV---RLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcCCe---ECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 45678999999999987 88999999999999999988899999998753
No 47
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.78 E-value=3.1e-09 Score=94.58 Aligned_cols=49 Identities=16% Similarity=0.108 Sum_probs=44.4
Q ss_pred CCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
.+...|+||++.|.++. .++|||.||+.||.+||....+||+||.++..
T Consensus 27 p~~~~CpI~~~~m~dPV---~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPV---RLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSEE---EETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCCe---ECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 45678999999999988 89999999999999999988899999998764
No 48
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.77 E-value=2.3e-09 Score=96.29 Aligned_cols=48 Identities=27% Similarity=0.575 Sum_probs=41.8
Q ss_pred CCCccccccCccCCCCceEEeccCCcccHHHHHHHHhc-CCCCCCcCcCcCC
Q 005363 647 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH-KNLCPICKTTALS 697 (700)
Q Consensus 647 ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~-knsCPICR~~Ll~ 697 (700)
++..|+||++.+.++. .++|||.||..||.+|+.. ...||+||+.+..
T Consensus 22 ~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILADPV---ETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhcCcE---EcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 3567999999997765 6899999999999999997 6789999998764
No 49
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.76 E-value=4e-09 Score=93.60 Aligned_cols=49 Identities=14% Similarity=0.073 Sum_probs=44.4
Q ss_pred CCCCccccccCccCCCCceEEeccC-CcccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCG-HDFHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCG-HiFH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
.++..|+||++.|.++. .++|| |.||+.||.+||....+||+||.++..
T Consensus 20 p~~~~CpI~~~~m~dPV---~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPV---VLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSSEE---ECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccCCe---ECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 45678999999999987 89999 999999999999988899999998764
No 50
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.74 E-value=5.4e-09 Score=105.18 Aligned_cols=49 Identities=14% Similarity=0.142 Sum_probs=42.7
Q ss_pred CCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcC-CCCCCcCcCcCC
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK-NLCPICKTTALS 697 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~k-nsCPICR~~Ll~ 697 (700)
.....|+||++.|.++. +++|||+||+.||.+|+... .+||+||.++..
T Consensus 206 ~~~~~c~i~~~~~~dPv---~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMREPC---ITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSSEE---ECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcCCe---ECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 35678999999999887 89999999999999999864 459999998753
No 51
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.72 E-value=4.8e-09 Score=85.88 Aligned_cols=48 Identities=31% Similarity=0.682 Sum_probs=41.0
Q ss_pred CCCCccccccCccCCCCceEEe--ccCCc-ccHHHHHHHHhcCCCCCCcCcCcC
Q 005363 646 QEQEPCCICQEEYNDGEDTGIL--HCGHD-FHTSCIKQWLMHKNLCPICKTTAL 696 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~L--pCGHi-FH~~CI~qWL~~knsCPICR~~Ll 696 (700)
.++..|.||++.+.+.. .+ ||||. ||..|+.+|++.+..||+||+.+.
T Consensus 6 ~~~~~C~IC~~~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGC---IVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEE---EEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEE---EECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 35568999999876553 55 99999 899999999998899999999875
No 52
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.70 E-value=6e-09 Score=112.89 Aligned_cols=48 Identities=33% Similarity=0.700 Sum_probs=41.5
Q ss_pred CCCccccccCccCCCCceEEeccCCcccHHHHHHHHh-cCCCCCCcCcCcCC
Q 005363 647 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM-HKNLCPICKTTALS 697 (700)
Q Consensus 647 ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~-~knsCPICR~~Ll~ 697 (700)
....|+||++.+.++ ..++|||.||..||.+|+. .+..||+||+.+..
T Consensus 331 ~~~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 331 TFQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSSBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 346899999998664 4889999999999999999 78899999998754
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.67 E-value=4.9e-09 Score=83.35 Aligned_cols=46 Identities=26% Similarity=0.509 Sum_probs=39.7
Q ss_pred CCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
.+...|+||++.|.++. .|+|||.||..||.+| +..||+||+.+..
T Consensus 4 ~~~~~C~IC~~~~~~p~---~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPK---LLPCLHTLCSGCLEAS---GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCS---CSTTSCCSBTTTCSSS---SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeE---EcCCCCcccHHHHccC---CCCCCcCCcEeec
Confidence 45678999999999876 8899999999999884 6689999998754
No 54
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.67 E-value=1.3e-08 Score=86.92 Aligned_cols=52 Identities=19% Similarity=0.526 Sum_probs=40.6
Q ss_pred CCCCCccccccCccCCCCceEEe--ccCCcccHHHHHHHHh-cCCCCCCcCcCcCC
Q 005363 645 QQEQEPCCICQEEYNDGEDTGIL--HCGHDFHTSCIKQWLM-HKNLCPICKTTALS 697 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~~del~~L--pCGHiFH~~CI~qWL~-~knsCPICR~~Ll~ 697 (700)
..++..|+||++.+...+. ..+ +|||.||..||.+|+. ....||+||+.+..
T Consensus 8 ~~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred cccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 3566789999998865432 233 5999999999999975 45679999998764
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.67 E-value=3.2e-09 Score=99.80 Aligned_cols=49 Identities=18% Similarity=0.470 Sum_probs=42.3
Q ss_pred CCCCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCC-CCCCcCcCc
Q 005363 644 SQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKN-LCPICKTTA 695 (700)
Q Consensus 644 ~~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~kn-sCPICR~~L 695 (700)
...+...|+||++.+.++. .++|||.||..||.+|+.... .||+||+++
T Consensus 27 ~l~~~~~C~IC~~~~~~pv---~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPF---QAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCCcCcCCCCCChhhcCcE---ECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 3456778999999998875 689999999999999998665 899999975
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.66 E-value=3.3e-09 Score=95.76 Aligned_cols=45 Identities=27% Similarity=0.613 Sum_probs=40.2
Q ss_pred CCCccccccCccCCCCceEEe-ccCCcccHHHHHHHHhcCCCCCCcCcCcC
Q 005363 647 EQEPCCICQEEYNDGEDTGIL-HCGHDFHTSCIKQWLMHKNLCPICKTTAL 696 (700)
Q Consensus 647 ed~~C~ICLEef~~~del~~L-pCGHiFH~~CI~qWL~~knsCPICR~~Ll 696 (700)
+...|+||++.|.++. .+ +|||.||..||.+|+. ..||+||+.+.
T Consensus 21 ~~~~C~IC~~~~~~pv---~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREPV---CLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSCB---CCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCcc---EeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 4567999999998876 77 9999999999999998 78999999874
No 57
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.66 E-value=8.1e-09 Score=84.26 Aligned_cols=48 Identities=29% Similarity=0.661 Sum_probs=40.8
Q ss_pred CCCCccccccCccCCCCceEEe--ccCCc-ccHHHHHHHHhcCCCCCCcCcCcC
Q 005363 646 QEQEPCCICQEEYNDGEDTGIL--HCGHD-FHTSCIKQWLMHKNLCPICKTTAL 696 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~L--pCGHi-FH~~CI~qWL~~knsCPICR~~Ll 696 (700)
.....|.||++.+.+.. .+ ||||. ||..|+.+|.+....||+||+.+.
T Consensus 5 ~~~~~C~IC~~~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGN---IIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCEE---EEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCeE---EEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 34568999999876554 55 99998 999999999988889999999875
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.60 E-value=1.7e-08 Score=88.42 Aligned_cols=46 Identities=26% Similarity=0.556 Sum_probs=39.7
Q ss_pred CCCCccccccCccCCCCceEEec-cCCcccHHHHHHHHhcC------CCCCC--cCcC
Q 005363 646 QEQEPCCICQEEYNDGEDTGILH-CGHDFHTSCIKQWLMHK------NLCPI--CKTT 694 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~Lp-CGHiFH~~CI~qWL~~k------nsCPI--CR~~ 694 (700)
.+...|+||++.|.++. .++ |||+||+.||.+||... .+||+ |++.
T Consensus 5 ~~~~~CPI~~~~~~dPV---~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPV---KNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSEE---EESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCCE---EcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 45678999999999877 885 99999999999999854 48999 9865
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.58 E-value=9.2e-09 Score=86.17 Aligned_cols=44 Identities=27% Similarity=0.576 Sum_probs=37.6
Q ss_pred CCCccccccCccCCCCceEEeccCCc-ccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 647 EQEPCCICQEEYNDGEDTGILHCGHD-FHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 647 ed~~C~ICLEef~~~del~~LpCGHi-FH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
++..|.||++.+.+.. .++|||. ||..|+.+| ..||+||+.+..
T Consensus 23 ~~~~C~iC~~~~~~~~---~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIV---FVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCEE---EETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCEE---EcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 4457999999886654 8899999 999999999 789999998753
No 60
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.53 E-value=5.1e-08 Score=95.66 Aligned_cols=50 Identities=14% Similarity=0.117 Sum_probs=43.1
Q ss_pred CCCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcC-CCCCCcCcCcCC
Q 005363 645 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK-NLCPICKTTALS 697 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~k-nsCPICR~~Ll~ 697 (700)
..+...|+||++.|.++. .++|||+||+.||.+|+... .+||+|+.++..
T Consensus 103 ip~~f~CPI~~elm~DPV---~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 103 IPDYLCGKISFELMREPC---ITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CCGGGBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CcHhhcccCccccCCCCe---ECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 346678999999999887 88999999999999999864 469999998753
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.51 E-value=3.5e-08 Score=94.13 Aligned_cols=51 Identities=24% Similarity=0.526 Sum_probs=43.5
Q ss_pred CCCCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCC-CCCCcCcCcCC
Q 005363 644 SQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKN-LCPICKTTALS 697 (700)
Q Consensus 644 ~~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~kn-sCPICR~~Ll~ 697 (700)
...+...|+||++.|.++. .++|||.||..||.+|+..+. .||+||..+..
T Consensus 14 ~~~~~~~C~IC~~~~~~pv---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 14 PLESKYECPICLMALREAV---QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCChhhcCcE---ECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 3456778999999998875 689999999999999998654 89999998764
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=1.2e-07 Score=79.33 Aligned_cols=43 Identities=26% Similarity=0.569 Sum_probs=36.1
Q ss_pred CCccccccCccCCCCceEEeccCCc-ccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 648 QEPCCICQEEYNDGEDTGILHCGHD-FHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 648 d~~C~ICLEef~~~del~~LpCGHi-FH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
+..|.||++.+.+.. .++|||. ||..|+.+ ...||+||+.+..
T Consensus 25 ~~~C~IC~~~~~~~~---~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAIV---FVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCBC---CSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCEE---EecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 346999999987765 7899999 99999965 3789999998764
No 63
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.39 E-value=4.8e-08 Score=104.25 Aligned_cols=52 Identities=27% Similarity=0.633 Sum_probs=40.3
Q ss_pred CCCCCccccccCccCCCCceE-----EeccCCcccHHHHHHHHhcC-----------CCCCCcCcCcC
Q 005363 645 QQEQEPCCICQEEYNDGEDTG-----ILHCGHDFHTSCIKQWLMHK-----------NLCPICKTTAL 696 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~~del~-----~LpCGHiFH~~CI~qWL~~k-----------nsCPICR~~Ll 696 (700)
.+...+|+||++.+.+...+- -.+|+|.||..||.+||+.. ..||+||+++.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 346678999999998733221 23799999999999999742 35999999875
No 64
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.32 E-value=1.5e-07 Score=81.72 Aligned_cols=48 Identities=31% Similarity=0.573 Sum_probs=39.1
Q ss_pred CCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcC--------CCCCC--cCcC
Q 005363 647 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK--------NLCPI--CKTT 694 (700)
Q Consensus 647 ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~k--------nsCPI--CR~~ 694 (700)
+...|.||++++..++.+..++|||.||..||.++++.+ -.||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 456799999999877644445799999999999999732 36999 9987
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=3e-07 Score=76.30 Aligned_cols=46 Identities=24% Similarity=0.668 Sum_probs=37.6
Q ss_pred CCCCCccccccCccCCCCceEEeccCCc-ccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 645 QQEQEPCCICQEEYNDGEDTGILHCGHD-FHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~~del~~LpCGHi-FH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
..+...|.||++.+.+. ..+||||. ||..|+.. ...||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNW---VLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCCC---EETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCCE---EEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 34567899999987654 48899999 99999984 4789999998754
No 66
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.26 E-value=2.9e-07 Score=75.15 Aligned_cols=46 Identities=15% Similarity=0.152 Sum_probs=41.2
Q ss_pred CccccccCccCCCCceEEe-ccCCcccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 649 EPCCICQEEYNDGEDTGIL-HCGHDFHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 649 ~~C~ICLEef~~~del~~L-pCGHiFH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
..|+||++.+.++. ++ +|||+|++.||.+||+.+.+||+++.++..
T Consensus 4 ~~CpIs~~~m~dPV---~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPRRPV---LSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCSSEE---EETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred EEecCCCCCCCCCE---EeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 57999999999775 77 899999999999999988889999998754
No 67
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.25 E-value=5.3e-07 Score=73.46 Aligned_cols=48 Identities=31% Similarity=0.789 Sum_probs=37.3
Q ss_pred CCCCccccccCccCCCCceEEeccC--C---cccHHHHHHHHhc--CCCCCCcCcCcC
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCG--H---DFHTSCIKQWLMH--KNLCPICKTTAL 696 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCG--H---iFH~~CI~qWL~~--knsCPICR~~Ll 696 (700)
.+...|.||+++.. +.+ ++||. | .||..||.+||.. +.+||+||+.+.
T Consensus 4 ~~~~~CrIC~~~~~--~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELG--NER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECS--CCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCC--Cce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 45678999999843 233 57855 4 8999999999984 568999999875
No 68
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.23 E-value=1.8e-07 Score=79.71 Aligned_cols=42 Identities=31% Similarity=0.714 Sum_probs=35.4
Q ss_pred CCccccccCccCCCCceEEeccCCc-ccHHHHHHHHhcCCCCCCcCcCcC
Q 005363 648 QEPCCICQEEYNDGEDTGILHCGHD-FHTSCIKQWLMHKNLCPICKTTAL 696 (700)
Q Consensus 648 d~~C~ICLEef~~~del~~LpCGHi-FH~~CI~qWL~~knsCPICR~~Ll 696 (700)
+..|.||++.+.+. ..+||||. ||..|+..| ..||+||+.+.
T Consensus 18 ~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 60 (79)
T 2yho_A 18 AMLCMVCCEEEINS---TFCPCGHTVCCESCAAQL----QSCPVCRSRVE 60 (79)
T ss_dssp HTBCTTTSSSBCCE---EEETTCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred CCEeEEeCcccCcE---EEECCCCHHHHHHHHHhc----CcCCCCCchhh
Confidence 45799999987654 48899999 999999887 38999999865
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.21 E-value=4.2e-07 Score=93.97 Aligned_cols=49 Identities=22% Similarity=0.394 Sum_probs=40.5
Q ss_pred CCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcC--CCCCC--cCcCcC
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK--NLCPI--CKTTAL 696 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~k--nsCPI--CR~~Ll 696 (700)
.....|+||++.|.++. ..+.|||.||+.||.+|+... ..||+ |++.+.
T Consensus 179 ~~el~CPIcl~~f~DPV--ts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPYEAPL--ISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBCSSEE--EESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCcccCCe--eeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 34568999999998887 234999999999999999854 46999 998764
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.12 E-value=3.9e-07 Score=97.41 Aligned_cols=44 Identities=25% Similarity=0.645 Sum_probs=38.0
Q ss_pred CCCccccccCccCCCCceEEeccCCc-ccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 647 EQEPCCICQEEYNDGEDTGILHCGHD-FHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 647 ed~~C~ICLEef~~~del~~LpCGHi-FH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
++..|+||++.+.++. .+||||. ||..|+..| ..||+||+.+..
T Consensus 294 ~~~~C~IC~~~~~~~v---~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVV---FIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCCEE---EETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCceE---EcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 4578999999987654 8899999 999999988 789999998753
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.58 E-value=3.4e-05 Score=69.16 Aligned_cols=46 Identities=20% Similarity=0.408 Sum_probs=36.6
Q ss_pred ccccccCccCCCCceEEeccCCcccHHHHHHHHhc-CCCCCCcCcCcCC
Q 005363 650 PCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH-KNLCPICKTTALS 697 (700)
Q Consensus 650 ~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~-knsCPICR~~Ll~ 697 (700)
.|.+|--.+. ...+.+||+|+||.+|+..|.++ .+.||+|+.++..
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 4778865544 34567799999999999999865 5789999998754
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.27 E-value=0.00013 Score=74.37 Aligned_cols=49 Identities=22% Similarity=0.585 Sum_probs=40.0
Q ss_pred CCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCC--CCCCcCcCcCC
Q 005363 647 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKN--LCPICKTTALS 697 (700)
Q Consensus 647 ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~kn--sCPICR~~Ll~ 697 (700)
....|.||.+-...+. ++-.|+|.||..|+.+|++.+. .||.|++....
T Consensus 179 ~i~~C~iC~~iv~~g~--~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSCE--ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCCc--ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 4778999999988765 3335999999999999998654 89999987543
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.78 E-value=0.0038 Score=55.43 Aligned_cols=48 Identities=27% Similarity=0.540 Sum_probs=38.5
Q ss_pred CCCCccccccCccCCCCceEEeccC-CcccHHHHHHHHhcCCCCCCcCcCcCCC
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCG-HDFHTSCIKQWLMHKNLCPICKTTALST 698 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCG-HiFH~~CI~qWL~~knsCPICR~~Ll~t 698 (700)
-.-..|-.|+-.. .. .+.|. |.+|..|+.-.|.....||||+++|++.
T Consensus 26 ~G~~nCKsCWf~~--k~---LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 26 LGPQFCKSCWFEN--KG---LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp SCCCCCCSSCSCC--SS---EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred cCcccChhhcccc--CC---eeeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 3456799998553 33 55665 9999999999999999999999998763
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.45 E-value=0.034 Score=48.29 Aligned_cols=36 Identities=17% Similarity=0.457 Sum_probs=27.9
Q ss_pred CCCccccccCccCCCCceEEeccCCcccHHHHHH-HH
Q 005363 647 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQ-WL 682 (700)
Q Consensus 647 ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~q-WL 682 (700)
++..|.||.+.|........+.|+|.||..|+.. |.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 3467999998754444445589999999999998 53
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=89.83 E-value=0.23 Score=41.06 Aligned_cols=48 Identities=19% Similarity=0.385 Sum_probs=34.3
Q ss_pred CCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcC----CCCCCcCcCcC
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK----NLCPICKTTAL 696 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~k----nsCPICR~~Ll 696 (700)
.....|.||.+. ++.+..-.|...||..|+...|... -.||.|+....
T Consensus 10 ~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 10 APGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp CTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred CCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence 455679999743 4433333799999999999888643 35999987543
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=85.73 E-value=0.68 Score=40.49 Aligned_cols=36 Identities=22% Similarity=0.503 Sum_probs=26.4
Q ss_pred CCCCCccccccCccCCCCceEEeccCCcccHHHHHHH
Q 005363 645 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQW 681 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qW 681 (700)
...++.|.|| +.|...+....--|+-+||..|+++-
T Consensus 12 ~~~D~~C~VC-~~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVC-EVWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTT-CCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCcccCcc-ccccccceeccccccccccHhhcccc
Confidence 3467889999 44555553334469999999999996
No 77
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=85.57 E-value=0.18 Score=40.70 Aligned_cols=53 Identities=25% Similarity=0.432 Sum_probs=36.3
Q ss_pred CCCCCccccccCccCCCC-ceEEeccCCcccHHHHHHHHh-----cCCCCCCcCcCcCC
Q 005363 645 QQEQEPCCICQEEYNDGE-DTGILHCGHDFHTSCIKQWLM-----HKNLCPICKTTALS 697 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~~d-el~~LpCGHiFH~~CI~qWL~-----~knsCPICR~~Ll~ 697 (700)
.++...|.||...+.+.. .+..-.|...||..|+.--.. .+..||.|+..-..
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~~ 61 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSGP 61 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTCS
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcCCC
Confidence 345677999999886444 333347999999999853221 34569999875443
No 78
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=84.61 E-value=0.5 Score=51.13 Aligned_cols=48 Identities=17% Similarity=0.333 Sum_probs=33.2
Q ss_pred CCccccccCccCCCCceEEeccCCc--ccHHHHHHHHhc--CCCCCCcCcCcCC
Q 005363 648 QEPCCICQEEYNDGEDTGILHCGHD--FHTSCIKQWLMH--KNLCPICKTTALS 697 (700)
Q Consensus 648 d~~C~ICLEef~~~del~~LpCGHi--FH~~CI~qWL~~--knsCPICR~~Ll~ 697 (700)
...|+|-+..+..+. +-..|.|. |-..-+.+.... +..||+|.+.+..
T Consensus 249 SL~CPlS~~ri~~Pv--Rg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 249 SLQCPISYTRMKYPS--KSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp ESBCTTTSSBCSSEE--EETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred eecCCCccccccccC--cCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCH
Confidence 457998877776665 56689998 655555555443 3459999987743
No 79
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=82.93 E-value=0.63 Score=37.58 Aligned_cols=47 Identities=28% Similarity=0.581 Sum_probs=33.1
Q ss_pred CCCCCccccccCccCCCCceEEeccCCcccHHHHHHHHh----cCCCCCCcCcC
Q 005363 645 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM----HKNLCPICKTT 694 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~----~knsCPICR~~ 694 (700)
...+..|.||... ++.+..-.|.-.||..|+..-|. .+-.||.|++.
T Consensus 8 ~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3456789999863 34333337999999999987654 23359999875
No 80
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=81.32 E-value=0.33 Score=40.40 Aligned_cols=52 Identities=17% Similarity=0.354 Sum_probs=34.7
Q ss_pred CCCCCccccccCccCCCCceEEeccCCcccHHHHHHHHh----cCCCCCCcCcCcC
Q 005363 645 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM----HKNLCPICKTTAL 696 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~----~knsCPICR~~Ll 696 (700)
..+...|.||.........+..=.|.-.||..|+..-+. .+..||.|+..+.
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 345567999987754323333337999999999975543 2346999987643
No 81
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=80.51 E-value=0.75 Score=35.43 Aligned_cols=44 Identities=25% Similarity=0.617 Sum_probs=30.1
Q ss_pred ccccccCccCCCCceEEeccCCcccHHHHHHHHhc----CCCCCCcCc
Q 005363 650 PCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH----KNLCPICKT 693 (700)
Q Consensus 650 ~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~----knsCPICR~ 693 (700)
.|.||...-..++.+..-.|...||..|+.+=|.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 48899876443443333379999999999765542 234999975
No 82
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=79.52 E-value=0.95 Score=54.32 Aligned_cols=49 Identities=16% Similarity=0.110 Sum_probs=43.0
Q ss_pred CCCCccccccCccCCCCceEEeccC-CcccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCG-HDFHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCG-HiFH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
-+...|+|-++-+.++. +++.| ++|-+.+|.+||....+||+-|.++..
T Consensus 889 P~~F~cPIs~~lM~DPV---ilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDPV---ILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp CGGGBCTTTCSBCSSEE---ECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred cHHhCCcchhhHHhCCe---EcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 35667999999999887 89997 699999999999998999999988754
No 83
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=77.71 E-value=1.3 Score=47.86 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=34.0
Q ss_pred CCccccccCccCCCCceEEeccCCc--ccHHHHHHHHhcC--CCCCCcCcCcCC
Q 005363 648 QEPCCICQEEYNDGEDTGILHCGHD--FHTSCIKQWLMHK--NLCPICKTTALS 697 (700)
Q Consensus 648 d~~C~ICLEef~~~del~~LpCGHi--FH~~CI~qWL~~k--nsCPICR~~Ll~ 697 (700)
...|+|-+..+..+. +-..|.|. |-..-+.+....+ ..||+|.+.+..
T Consensus 215 SL~CPlS~~ri~~P~--Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPC--RAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp ESBCTTTCSBCSSEE--EETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred eeeCCCccceeccCC--cCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCH
Confidence 457998877776655 56689999 6666666655543 459999998753
No 84
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=76.59 E-value=0.49 Score=38.24 Aligned_cols=49 Identities=31% Similarity=0.642 Sum_probs=33.8
Q ss_pred CCCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhc----CCCCCCcCcCcC
Q 005363 645 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH----KNLCPICKTTAL 696 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~----knsCPICR~~Ll 696 (700)
...+..|.||.+. ++.+..-.|...||..|+..-|.. .-.||.|+...+
T Consensus 6 d~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp CSSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred cCCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 3456779999753 343333379999999999865542 335999987654
No 85
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=75.32 E-value=0.96 Score=37.75 Aligned_cols=49 Identities=24% Similarity=0.454 Sum_probs=33.5
Q ss_pred CccccccCccCCCCceEEeccCCcccHHHHHHH------H---hcCCCCCCcCcCcCCC
Q 005363 649 EPCCICQEEYNDGEDTGILHCGHDFHTSCIKQW------L---MHKNLCPICKTTALST 698 (700)
Q Consensus 649 ~~C~ICLEef~~~del~~LpCGHiFH~~CI~qW------L---~~knsCPICR~~Ll~t 698 (700)
..| ||...+.....+..-.|...||..|+.-- | ..+..||.|+..-.+.
T Consensus 17 ~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p~ 74 (76)
T 1wem_A 17 LYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGPS 74 (76)
T ss_dssp CCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCSS
T ss_pred CEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCcC
Confidence 345 89988764444444579999999998321 1 2467899998765544
No 86
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=74.29 E-value=2.3 Score=35.80 Aligned_cols=47 Identities=26% Similarity=0.416 Sum_probs=31.3
Q ss_pred CCccccccCccCC-CCceEEeccCCcccHHHHHHHHh-----cCCCCCCcCcCc
Q 005363 648 QEPCCICQEEYND-GEDTGILHCGHDFHTSCIKQWLM-----HKNLCPICKTTA 695 (700)
Q Consensus 648 d~~C~ICLEef~~-~del~~LpCGHiFH~~CI~qWL~-----~knsCPICR~~L 695 (700)
...| ||...+.+ ...+..-.|...||..|+.--.. .+..||.|+...
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 3445 99988753 33344447999999999842211 345699999754
No 87
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=72.23 E-value=5.2 Score=34.81 Aligned_cols=47 Identities=23% Similarity=0.591 Sum_probs=34.9
Q ss_pred CCCCccccccCccCCCCceEEecc----CCcccHHHHHHHHhcC-----CCCCCcCcCc
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHC----GHDFHTSCIKQWLMHK-----NLCPICKTTA 695 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpC----GHiFH~~CI~qWL~~k-----nsCPICR~~L 695 (700)
.....|.+|.|.+++.. ..+| .|.||..|-+..++.+ -.||-=++..
T Consensus 13 ~a~l~CtlC~erLEdtH---FVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG~kCp 68 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTH---FVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEKCP 68 (93)
T ss_dssp CCSCCCSSSCSCCSSTT---SEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTSSCCB
T ss_pred CCeeEeecchhhhccCc---eeeCCCccCCeeeccccHHHHHhcCCCCcEECCCCCccc
Confidence 45678999999999888 4555 5999999999998743 2366554433
No 88
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.01 E-value=0.36 Score=38.26 Aligned_cols=47 Identities=23% Similarity=0.603 Sum_probs=32.4
Q ss_pred CCCCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhc----CCCCCCcCc
Q 005363 644 SQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH----KNLCPICKT 693 (700)
Q Consensus 644 ~~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~----knsCPICR~ 693 (700)
....+..|.||.+. ++.+..-.|...||..|+.+-|.. +-.||.|+.
T Consensus 5 ~~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 5 SSGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred cCCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 34567789999864 443333379999999999865542 234988864
No 89
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=71.95 E-value=1 Score=40.01 Aligned_cols=38 Identities=16% Similarity=0.420 Sum_probs=27.6
Q ss_pred CCCCccccccCccCCCCceEEeccCCcccHHHHHHHHh
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM 683 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~ 683 (700)
..+..|.||.+.-...+.+..-.|...||..|+...+.
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 46778999987643333344458999999999987764
No 90
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=71.35 E-value=1.2 Score=37.53 Aligned_cols=52 Identities=19% Similarity=0.324 Sum_probs=34.5
Q ss_pred CCCccccccCccCCCCceEEe--ccCCcccHHHHHHHH---------hcCCCCCCcCcCcCCCC
Q 005363 647 EQEPCCICQEEYNDGEDTGIL--HCGHDFHTSCIKQWL---------MHKNLCPICKTTALSTS 699 (700)
Q Consensus 647 ed~~C~ICLEef~~~del~~L--pCGHiFH~~CI~qWL---------~~knsCPICR~~Ll~tS 699 (700)
....| ||......+..+..= .|...||..|+.--- ..+..||.|+....+.|
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~~s 77 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGPSS 77 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSCCC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccCCCC
Confidence 34456 898875555545555 699999999984211 13557999987665443
No 91
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=70.62 E-value=2.8 Score=32.60 Aligned_cols=43 Identities=23% Similarity=0.351 Sum_probs=29.2
Q ss_pred ccccccCccCCCCceE-Ee-ccCCcccHHHHHHH----HhcCCCCCCcC
Q 005363 650 PCCICQEEYNDGEDTG-IL-HCGHDFHTSCIKQW----LMHKNLCPICK 692 (700)
Q Consensus 650 ~C~ICLEef~~~del~-~L-pCGHiFH~~CI~qW----L~~knsCPICR 692 (700)
.|.||...+.++...+ .- .|.-.||..|+.-- ...+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 5889999886554333 33 48889999996321 23567799996
No 92
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=70.31 E-value=1.3 Score=39.01 Aligned_cols=46 Identities=24% Similarity=0.387 Sum_probs=31.6
Q ss_pred CCccccccCccCCCCceEEeccCCcccHHHHHHHHh---cCCCCCCcCcC
Q 005363 648 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM---HKNLCPICKTT 694 (700)
Q Consensus 648 d~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~---~knsCPICR~~ 694 (700)
...| ||......+..+..-.|.-.||..|+..=+. ....||.|+..
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 3456 8987766665444448999999999865332 23469999854
No 93
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=70.17 E-value=0.68 Score=37.48 Aligned_cols=52 Identities=31% Similarity=0.601 Sum_probs=34.7
Q ss_pred CCCCCccccccCccCC--CCceEEeccCCcccHHHHHHHHh-------cCCCCCCcCcCcC
Q 005363 645 QQEQEPCCICQEEYND--GEDTGILHCGHDFHTSCIKQWLM-------HKNLCPICKTTAL 696 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~--~del~~LpCGHiFH~~CI~qWL~-------~knsCPICR~~Ll 696 (700)
...+..|.||...... +..+..-.|.-.||..|+..-|. ..-.|+.|+....
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 3466789999977543 22222227999999999876432 2345999987544
No 94
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=67.39 E-value=5.9 Score=35.37 Aligned_cols=33 Identities=27% Similarity=0.519 Sum_probs=23.0
Q ss_pred CCCccccccCccC------CCCceEEeccCCcccHHHHH
Q 005363 647 EQEPCCICQEEYN------DGEDTGILHCGHDFHTSCIK 679 (700)
Q Consensus 647 ed~~C~ICLEef~------~~del~~LpCGHiFH~~CI~ 679 (700)
....|.+|+..-. .++.+..-.|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 4567999987631 22334444899999999995
No 95
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=66.22 E-value=2.4 Score=37.26 Aligned_cols=47 Identities=32% Similarity=0.670 Sum_probs=29.7
Q ss_pred CCCccccccCccCCCCceEEec--cC-CcccHHHHHHHHh----cCCCCCCcCcCcCC
Q 005363 647 EQEPCCICQEEYNDGEDTGILH--CG-HDFHTSCIKQWLM----HKNLCPICKTTALS 697 (700)
Q Consensus 647 ed~~C~ICLEef~~~del~~Lp--CG-HiFH~~CI~qWL~----~knsCPICR~~Ll~ 697 (700)
+...| ||..... +..+..=. |. ..||..|+. |. .+..||.|+.....
T Consensus 35 e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~k 88 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESGP 88 (91)
T ss_dssp CCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCSS
T ss_pred CCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCCc
Confidence 33445 9988653 44332224 66 689999996 33 23469999876543
No 96
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=66.15 E-value=0.54 Score=39.00 Aligned_cols=53 Identities=32% Similarity=0.428 Sum_probs=35.3
Q ss_pred CCCCccccccCccCCCC-ceEEeccCCcccHHHHHHH----HhcCCCCCCcCcCcCCCC
Q 005363 646 QEQEPCCICQEEYNDGE-DTGILHCGHDFHTSCIKQW----LMHKNLCPICKTTALSTS 699 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~d-el~~LpCGHiFH~~CI~qW----L~~knsCPICR~~Ll~tS 699 (700)
.....| ||...+.++. .+..-.|...||..|+.-- +..+..||.|+....+.|
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~pss 71 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSGPSS 71 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCSSCC
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCCCCCC
Confidence 344567 7988776554 3444479999999998532 123456999987665544
No 97
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=65.23 E-value=2.4 Score=37.11 Aligned_cols=49 Identities=22% Similarity=0.483 Sum_probs=34.0
Q ss_pred CCCCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhc----CCCCCCcCcCc
Q 005363 644 SQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH----KNLCPICKTTA 695 (700)
Q Consensus 644 ~~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~----knsCPICR~~L 695 (700)
....+..|.||... ++.+..-.|.-.||..|+.+=|.. .-.||.|+...
T Consensus 21 ~d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 21 LDDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred cCCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence 34566789999854 443333378899999999876653 23599998653
No 98
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=61.81 E-value=0.74 Score=37.64 Aligned_cols=46 Identities=24% Similarity=0.600 Sum_probs=32.0
Q ss_pred CCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhc----CCCCCCcCcC
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH----KNLCPICKTT 694 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~----knsCPICR~~ 694 (700)
..+..|.||.+. ++.+..-.|.-.||..|+.+-|.. .-.||.|...
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 456789999863 443333379999999999865542 3359999764
No 99
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=61.37 E-value=5.8 Score=32.51 Aligned_cols=34 Identities=35% Similarity=0.659 Sum_probs=23.8
Q ss_pred CCCCCccccccCccCCCCceE-Ee-ccCCcccHHHH
Q 005363 645 QQEQEPCCICQEEYNDGEDTG-IL-HCGHDFHTSCI 678 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~~del~-~L-pCGHiFH~~CI 678 (700)
......|.+|...+.+....+ .- .|.-.||..|+
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 345678999999987665433 33 69999999997
No 100
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=61.14 E-value=2.6 Score=35.24 Aligned_cols=50 Identities=20% Similarity=0.421 Sum_probs=32.3
Q ss_pred CCCCCccccccCcc-CCCCceEEe-ccCCcccHHHHHHHHh--cCCCCCCcCcC
Q 005363 645 QQEQEPCCICQEEY-NDGEDTGIL-HCGHDFHTSCIKQWLM--HKNLCPICKTT 694 (700)
Q Consensus 645 ~~ed~~C~ICLEef-~~~del~~L-pCGHiFH~~CI~qWL~--~knsCPICR~~ 694 (700)
...+..|.||.+.- .+.+++..- .|.-.||..|+..-+. ..-.||.|+..
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 34677899998764 222333222 7999999999975432 23359988753
No 101
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=60.98 E-value=8.7 Score=36.29 Aligned_cols=47 Identities=28% Similarity=0.510 Sum_probs=32.6
Q ss_pred CCCCCccccccCccCCCCceEEeccCCcccHHHHHHHHh-----------cCCCCCCcCcC
Q 005363 645 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM-----------HKNLCPICKTT 694 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~-----------~knsCPICR~~ 694 (700)
...++.|.||.+- ++.+-.=.|--.||..||.+-|. ..-.||+|+..
T Consensus 60 Dg~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TSCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 4457789999653 44222227999999999997652 23459999864
No 102
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.96 E-value=0.66 Score=40.55 Aligned_cols=49 Identities=20% Similarity=0.354 Sum_probs=32.7
Q ss_pred CCCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhc----CCCCCCcCc
Q 005363 645 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH----KNLCPICKT 693 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~----knsCPICR~ 693 (700)
..++..|.||...-.....+..=.|...||..|+.+=|.. +-.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 13 FIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred ccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 3456679999876433333333379999999999754432 334999975
No 103
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=59.98 E-value=2.7 Score=36.36 Aligned_cols=50 Identities=20% Similarity=0.414 Sum_probs=32.5
Q ss_pred CCCCccccccCccC-CCCceEE-eccCCcccHHHHHHHHh--cCCCCCCcCcCc
Q 005363 646 QEQEPCCICQEEYN-DGEDTGI-LHCGHDFHTSCIKQWLM--HKNLCPICKTTA 695 (700)
Q Consensus 646 ~ed~~C~ICLEef~-~~del~~-LpCGHiFH~~CI~qWL~--~knsCPICR~~L 695 (700)
+.+..|.||...-. +.+++.. -.|.-.||..|+..-+. ..-.||.|....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 46678999987542 2222222 27999999999975432 234599997654
No 104
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=59.24 E-value=0.95 Score=39.18 Aligned_cols=49 Identities=16% Similarity=0.367 Sum_probs=32.5
Q ss_pred CCCccccccCccCCC-CceEEe-ccCCcccHHHHHHHHh--------cCCCCCCcCcCc
Q 005363 647 EQEPCCICQEEYNDG-EDTGIL-HCGHDFHTSCIKQWLM--------HKNLCPICKTTA 695 (700)
Q Consensus 647 ed~~C~ICLEef~~~-del~~L-pCGHiFH~~CI~qWL~--------~knsCPICR~~L 695 (700)
.+..|.||...-... ..+..- .|...||..|+.+-|. ..-.|+.|+...
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 356799998764432 222222 7999999999986553 234599997644
No 105
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=58.87 E-value=4.6 Score=33.68 Aligned_cols=46 Identities=33% Similarity=0.681 Sum_probs=28.8
Q ss_pred CCCccccccCccCCCCceEEec--cC-CcccHHHHHHHHh----cCCCCCCcCcCcC
Q 005363 647 EQEPCCICQEEYNDGEDTGILH--CG-HDFHTSCIKQWLM----HKNLCPICKTTAL 696 (700)
Q Consensus 647 ed~~C~ICLEef~~~del~~Lp--CG-HiFH~~CI~qWL~----~knsCPICR~~Ll 696 (700)
+...| ||..... +..+..=. |. ..||..|+. |. .+-.||.|+....
T Consensus 15 ~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp SCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 34456 8987643 44222224 66 689999996 43 2345999987643
No 106
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=58.82 E-value=2 Score=40.86 Aligned_cols=46 Identities=22% Similarity=0.636 Sum_probs=30.9
Q ss_pred CCCccccccCccCCCC-ceEEeccCCcccHHHHHHHH-----hcCCCCCCcCc
Q 005363 647 EQEPCCICQEEYNDGE-DTGILHCGHDFHTSCIKQWL-----MHKNLCPICKT 693 (700)
Q Consensus 647 ed~~C~ICLEef~~~d-el~~LpCGHiFH~~CI~qWL-----~~knsCPICR~ 693 (700)
+...| ||...+.... .+.+-.|.-.||..|+.--. ..+..||.|+.
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 44568 9988775443 34444799999999984211 13456999985
No 107
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=57.97 E-value=1.4 Score=36.42 Aligned_cols=48 Identities=21% Similarity=0.405 Sum_probs=31.7
Q ss_pred CCCCccccccCccCCCCceEEeccCCcccHHHHHHHH---hcCCCCCCcCcC
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWL---MHKNLCPICKTT 694 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL---~~knsCPICR~~ 694 (700)
.+...| ||...+.....+..-.|...||..|+.--- ..+..||.|+..
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~s 67 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDS 67 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHTC
T ss_pred CCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCCC
Confidence 344557 998876543444444799999999985322 134569999753
No 108
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=56.41 E-value=1.5 Score=35.06 Aligned_cols=47 Identities=21% Similarity=0.574 Sum_probs=32.5
Q ss_pred CCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhc----CCCCCCcCcCc
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH----KNLCPICKTTA 695 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~----knsCPICR~~L 695 (700)
..+..|.||... ++.+..-.|.-.||..|+.+-|.. .-.||.|....
T Consensus 3 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 3 IHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 356789999864 443333379999999999865542 23599997644
No 109
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=52.26 E-value=5.2 Score=32.60 Aligned_cols=44 Identities=25% Similarity=0.337 Sum_probs=30.7
Q ss_pred CccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcC
Q 005363 649 EPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICK 692 (700)
Q Consensus 649 ~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR 692 (700)
..|--|+..|.+........|++.||.+|=.=--+.-+.||-|.
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC~ 59 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGCI 59 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTTC
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCCC
Confidence 45999999886443234558999999999533333456799883
No 110
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=48.93 E-value=4.2 Score=36.33 Aligned_cols=44 Identities=23% Similarity=0.568 Sum_probs=29.4
Q ss_pred ccccccCccCCC-CceEEeccCCcccHHHHHHHHhc----CCCCCCcCc
Q 005363 650 PCCICQEEYNDG-EDTGILHCGHDFHTSCIKQWLMH----KNLCPICKT 693 (700)
Q Consensus 650 ~C~ICLEef~~~-del~~LpCGHiFH~~CI~qWL~~----knsCPICR~ 693 (700)
.|.||.+.-.+. ..+..-.|...||..|+.+-|.. .-.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 688888653232 32222279999999999766553 235999985
No 111
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=47.95 E-value=7.3 Score=36.32 Aligned_cols=34 Identities=18% Similarity=0.384 Sum_probs=25.5
Q ss_pred CCCCccccccCccCC--CCceEEeccCCcccHHHHH
Q 005363 646 QEQEPCCICQEEYND--GEDTGILHCGHDFHTSCIK 679 (700)
Q Consensus 646 ~ed~~C~ICLEef~~--~del~~LpCGHiFH~~CI~ 679 (700)
..+..|.+|...|.. +....+..|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 466789999999942 3334455899999999954
No 112
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=46.87 E-value=24 Score=31.13 Aligned_cols=50 Identities=22% Similarity=0.403 Sum_probs=35.9
Q ss_pred CCCccccccCccCCCCc--e--EEeccCCcccHHHHHHHHh-cCCCCCCcCcCcC
Q 005363 647 EQEPCCICQEEYNDGED--T--GILHCGHDFHTSCIKQWLM-HKNLCPICKTTAL 696 (700)
Q Consensus 647 ed~~C~ICLEef~~~de--l--~~LpCGHiFH~~CI~qWL~-~knsCPICR~~Ll 696 (700)
....|.||=+++-.... + ..-.|+--.|+.|+.-=.+ .+..||.|++.+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 44689999998754432 2 2236888899999865444 5678999999875
No 113
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=46.86 E-value=16 Score=33.90 Aligned_cols=47 Identities=30% Similarity=0.569 Sum_probs=31.6
Q ss_pred CCCCCCccccccCccCCCCceEEe-ccCCcccHHHHHHHH------h-----cCCCCCCcCcC
Q 005363 644 SQQEQEPCCICQEEYNDGEDTGIL-HCGHDFHTSCIKQWL------M-----HKNLCPICKTT 694 (700)
Q Consensus 644 ~~~ed~~C~ICLEef~~~del~~L-pCGHiFH~~CI~qWL------~-----~knsCPICR~~ 694 (700)
.+..++.|.||.+- ++ +..- .|-..||.+||.+-| + ..-.|++|+..
T Consensus 53 ~Dg~~~~C~vC~dG---G~-LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 53 SDGMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TTSCBSSCTTTCCC---SE-EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCCcCeecCCC---Ce-eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 34456779999743 33 2222 699999999999752 1 22459999764
No 114
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=45.63 E-value=3 Score=37.00 Aligned_cols=50 Identities=20% Similarity=0.409 Sum_probs=31.8
Q ss_pred ccccccCccCCCCceEEeccCCcccHHHHHHHHhc----CCCCCCcCcCcCCCC
Q 005363 650 PCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH----KNLCPICKTTALSTS 699 (700)
Q Consensus 650 ~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~----knsCPICR~~Ll~tS 699 (700)
.|.||...-.+...+..-.|...||..|+.+-|.. .-.||.|+......+
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~~g~s 109 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICISGPS 109 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCSCSCC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCcCCCCC
Confidence 57777665433332333379999999999865542 335998877554433
No 115
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=45.39 E-value=9.6 Score=31.84 Aligned_cols=32 Identities=25% Similarity=0.661 Sum_probs=25.6
Q ss_pred CCCCccccccCccCCCCceEEecc-CCcccHHHHHHH
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHC-GHDFHTSCIKQW 681 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpC-GHiFH~~CI~qW 681 (700)
++..-|.||.++ ..++.+.| +-+||..|.++-
T Consensus 6 ee~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNED----ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCC----CeEEecCCCCceehHHHHHHH
Confidence 445569999887 34778899 899999998775
No 116
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=42.57 E-value=10 Score=33.77 Aligned_cols=48 Identities=31% Similarity=0.589 Sum_probs=32.9
Q ss_pred CCccccccCccCCCCceEEe--ccCCcccHHHHHHH------H----hcCCCCCCcCcCc
Q 005363 648 QEPCCICQEEYNDGEDTGIL--HCGHDFHTSCIKQW------L----MHKNLCPICKTTA 695 (700)
Q Consensus 648 d~~C~ICLEef~~~del~~L--pCGHiFH~~CI~qW------L----~~knsCPICR~~L 695 (700)
...|.||...|.+......- .|.-.||..|+.-- | ..+..||.|+...
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 45799999998665443333 58999999997311 1 0345699998754
No 117
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=42.12 E-value=5 Score=40.70 Aligned_cols=47 Identities=21% Similarity=0.516 Sum_probs=27.4
Q ss_pred CCccccccCccCCCCceEEeccCCcccHHHHHHHHhc-----CCCCCCcCcC
Q 005363 648 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH-----KNLCPICKTT 694 (700)
Q Consensus 648 d~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~-----knsCPICR~~ 694 (700)
+..|.||...-..+..+.+=.|...||..|+.+=|.. .-.||.|+..
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 3468888764333333333379999999999865542 2359999764
No 118
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=41.19 E-value=3.4 Score=35.09 Aligned_cols=44 Identities=23% Similarity=0.579 Sum_probs=27.4
Q ss_pred ccccccCccCCCCceEEeccCCcccHHHHHHHHhc----C-CCCCCcCc
Q 005363 650 PCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH----K-NLCPICKT 693 (700)
Q Consensus 650 ~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~----k-nsCPICR~ 693 (700)
.|.||...-.....+..=.|...||..|+.+-|.. . -.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 56677655332221212279999999999876652 2 35999985
No 119
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=40.68 E-value=12 Score=31.61 Aligned_cols=36 Identities=25% Similarity=0.571 Sum_probs=26.3
Q ss_pred CCCCccccccCccCCCCc-eEEeccCCcccHHHHHHH
Q 005363 646 QEQEPCCICQEEYNDGED-TGILHCGHDFHTSCIKQW 681 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~de-l~~LpCGHiFH~~CI~qW 681 (700)
.+...|.+|...|..-.. -..-.||.+||..|....
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 445679999999975442 223379999999997654
No 120
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=39.33 E-value=13 Score=33.36 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=22.5
Q ss_pred CccccccCccCC-------CCceEEeccCCcccHHHHHHH
Q 005363 649 EPCCICQEEYND-------GEDTGILHCGHDFHTSCIKQW 681 (700)
Q Consensus 649 ~~C~ICLEef~~-------~del~~LpCGHiFH~~CI~qW 681 (700)
..|.||+..-.. ++.+....|+..||..|+..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 469999876421 122334479999999998754
No 121
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.04 E-value=6.2 Score=33.41 Aligned_cols=46 Identities=24% Similarity=0.481 Sum_probs=30.0
Q ss_pred CCccccccCccCCCCceEEeccCCcccHHHHHHHHhc-----CCCCCCcCc
Q 005363 648 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH-----KNLCPICKT 693 (700)
Q Consensus 648 d~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~-----knsCPICR~ 693 (700)
+..|.||...-..++.+..=.|...||..|+.+=|.. .-.||.|+.
T Consensus 26 ~c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 26 SCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 3478888764333332222279999999999865542 335999975
No 122
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=37.91 E-value=2.2 Score=34.97 Aligned_cols=44 Identities=18% Similarity=0.327 Sum_probs=26.7
Q ss_pred CccccccCccCCCCceEEe--ccCCcccHHHHHHH---Hh-----cCCCCCCcCc
Q 005363 649 EPCCICQEEYNDGEDTGIL--HCGHDFHTSCIKQW---LM-----HKNLCPICKT 693 (700)
Q Consensus 649 ~~C~ICLEef~~~del~~L--pCGHiFH~~CI~qW---L~-----~knsCPICR~ 693 (700)
..| ||......+..+..= .|...||..|+.-- .. .+..||.||.
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 345 897665555433222 38889999997210 01 2456999985
No 123
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=36.50 E-value=15 Score=33.10 Aligned_cols=44 Identities=27% Similarity=0.637 Sum_probs=28.0
Q ss_pred CCCCCCccccccCccCCCCceEEec---cCCcccHHHHHHHHhc----CCCCCCcCc
Q 005363 644 SQQEQEPCCICQEEYNDGEDTGILH---CGHDFHTSCIKQWLMH----KNLCPICKT 693 (700)
Q Consensus 644 ~~~ed~~C~ICLEef~~~del~~Lp---CGHiFH~~CI~qWL~~----knsCPICR~ 693 (700)
....+..|.+|.+ .++ +..-. |-..||..|+. |.. +-.||.|+-
T Consensus 11 ~~~~~~~C~~C~~---~G~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C 61 (107)
T 4gne_A 11 KQMHEDYCFQCGD---GGE-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQC 61 (107)
T ss_dssp CCSSCSSCTTTCC---CSE-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBC
T ss_pred cCCCCCCCCcCCC---CCc-EeEECCCCCCcccccccCc--CCcCCCCCEECCCCCC
Confidence 3456778999983 233 33333 88999999997 442 234886653
No 124
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=36.23 E-value=7.5 Score=41.42 Aligned_cols=49 Identities=14% Similarity=0.266 Sum_probs=0.0
Q ss_pred CCCccccccCccCCCC-ceEEeccCCcccHHHHHHHHhc-------CCCCCCcCcCc
Q 005363 647 EQEPCCICQEEYNDGE-DTGILHCGHDFHTSCIKQWLMH-------KNLCPICKTTA 695 (700)
Q Consensus 647 ed~~C~ICLEef~~~d-el~~LpCGHiFH~~CI~qWL~~-------knsCPICR~~L 695 (700)
+...|.+|...|..-. ...+-.||++||..|...++.. ...|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 4567999999886443 2334589999999999776521 23477776544
No 125
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=36.01 E-value=2.1 Score=38.52 Aligned_cols=49 Identities=18% Similarity=0.410 Sum_probs=32.4
Q ss_pred ccccccCccCCCCceEEeccCCcccHHHHHHHHhc----CCCCCCcCcCcCCC
Q 005363 650 PCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH----KNLCPICKTTALST 698 (700)
Q Consensus 650 ~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~----knsCPICR~~Ll~t 698 (700)
.|.||...-..+..+..-.|...||..|+.+=|.. .-.||.|+..+...
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~k 112 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKEK 112 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHHHT
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchhhcc
Confidence 58888776444443333379999999999865542 23499997655443
No 126
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=35.27 E-value=19 Score=31.07 Aligned_cols=36 Identities=19% Similarity=0.458 Sum_probs=26.1
Q ss_pred CCCCccccccCccCCCCc-eEEeccCCcccHHHHHHH
Q 005363 646 QEQEPCCICQEEYNDGED-TGILHCGHDFHTSCIKQW 681 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~de-l~~LpCGHiFH~~CI~qW 681 (700)
.+...|.+|...|..-.. -..-.||++||..|....
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 455689999999976542 223379999999997553
No 127
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=34.96 E-value=19 Score=30.55 Aligned_cols=37 Identities=14% Similarity=0.355 Sum_probs=27.2
Q ss_pred CCCCCccccccCccCCCCc-eEEeccCCcccHHHHHHH
Q 005363 645 QQEQEPCCICQEEYNDGED-TGILHCGHDFHTSCIKQW 681 (700)
Q Consensus 645 ~~ed~~C~ICLEef~~~de-l~~LpCGHiFH~~CI~qW 681 (700)
+.+...|.+|...|..-.. -..-.||++||..|....
T Consensus 18 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 18 DEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 3456689999999976542 223379999999997654
No 128
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=34.75 E-value=4 Score=37.51 Aligned_cols=46 Identities=22% Similarity=0.548 Sum_probs=28.7
Q ss_pred CCCccccccCccCCCC-ceEEeccCCcccHHHHHHHHhcCCCCCCcC
Q 005363 647 EQEPCCICQEEYNDGE-DTGILHCGHDFHTSCIKQWLMHKNLCPICK 692 (700)
Q Consensus 647 ed~~C~ICLEef~~~d-el~~LpCGHiFH~~CI~qWL~~knsCPICR 692 (700)
....|.+|...|..-. +-..-.||.+||..|....+.....|-.|-
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~ 64 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQ 64 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHH
Confidence 4467999999997543 223448999999999766544444565553
No 129
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=34.56 E-value=6.4 Score=32.61 Aligned_cols=45 Identities=22% Similarity=0.572 Sum_probs=28.0
Q ss_pred ccccccCccCCCCceEEeccCCcccHHHHHHHHhc-----CCCCCCcCcC
Q 005363 650 PCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH-----KNLCPICKTT 694 (700)
Q Consensus 650 ~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~-----knsCPICR~~ 694 (700)
.|.||...-..+..+..=.|...||..|+.+=|.. .-.||.|+..
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 56677654222332211269999999999865542 3359999864
No 130
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=34.10 E-value=4 Score=32.77 Aligned_cols=42 Identities=33% Similarity=0.725 Sum_probs=26.2
Q ss_pred CCccccccCccCCCCceEEec--cC-CcccHHHHHHHHhc----CCCCCCcCc
Q 005363 648 QEPCCICQEEYNDGEDTGILH--CG-HDFHTSCIKQWLMH----KNLCPICKT 693 (700)
Q Consensus 648 d~~C~ICLEef~~~del~~Lp--CG-HiFH~~CI~qWL~~----knsCPICR~ 693 (700)
...| ||.... .++.+..=. |. ..||..|+. |.. +-.||.|+.
T Consensus 9 ~~yC-~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVS-YGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCC-CCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 3445 998764 243222224 66 699999997 332 345999975
No 131
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=34.02 E-value=14 Score=36.34 Aligned_cols=35 Identities=20% Similarity=0.478 Sum_probs=25.9
Q ss_pred CCCccccccCccCCCCc-eEEeccCCcccHHHHHHH
Q 005363 647 EQEPCCICQEEYNDGED-TGILHCGHDFHTSCIKQW 681 (700)
Q Consensus 647 ed~~C~ICLEef~~~de-l~~LpCGHiFH~~CI~qW 681 (700)
++..|.+|...|..-.. -.+-.||++||..|....
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 45789999999975432 233479999999997654
No 132
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=33.79 E-value=16 Score=33.33 Aligned_cols=36 Identities=19% Similarity=0.459 Sum_probs=26.2
Q ss_pred CCCCccccccCccCCCCc-eEEeccCCcccHHHHHHH
Q 005363 646 QEQEPCCICQEEYNDGED-TGILHCGHDFHTSCIKQW 681 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~de-l~~LpCGHiFH~~CI~qW 681 (700)
.+...|.+|...|..-.. -..-.||++||..|....
T Consensus 67 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 67 NEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 345679999999975442 223479999999997654
No 133
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=33.41 E-value=17 Score=31.26 Aligned_cols=36 Identities=22% Similarity=0.422 Sum_probs=26.6
Q ss_pred CCCccccccCccCCCC-ceEEeccCCcccHHHHHHHH
Q 005363 647 EQEPCCICQEEYNDGE-DTGILHCGHDFHTSCIKQWL 682 (700)
Q Consensus 647 ed~~C~ICLEef~~~d-el~~LpCGHiFH~~CI~qWL 682 (700)
+...|.+|...|..-. +-..-.||++||..|...++
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 4567999999997544 23344899999999976654
No 134
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=33.39 E-value=15 Score=36.55 Aligned_cols=36 Identities=19% Similarity=0.488 Sum_probs=26.8
Q ss_pred CCCccccccCccCCCCc-eEEeccCCcccHHHHHHHH
Q 005363 647 EQEPCCICQEEYNDGED-TGILHCGHDFHTSCIKQWL 682 (700)
Q Consensus 647 ed~~C~ICLEef~~~de-l~~LpCGHiFH~~CI~qWL 682 (700)
++..|.+|...|..-.. -.+-.||++||..|-...+
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~ 199 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYS 199 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCcc
Confidence 45689999999975542 3344899999999976543
No 135
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=33.36 E-value=31 Score=28.77 Aligned_cols=41 Identities=17% Similarity=0.334 Sum_probs=28.1
Q ss_pred CCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
.....|..|.+.+.... +..-+..||.+|. .|-.|++.|..
T Consensus 23 ~~~~~C~~C~~~I~~~~---~~a~~~~~H~~CF--------~C~~C~~~L~~ 63 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGAV---VKARDKYRHPECF--------VCADCNLNLKQ 63 (89)
T ss_dssp CSCCBCTTTCCBCCSCC---EESSSCEECTTTC--------CCSSSCCCTTT
T ss_pred CcCCCcccCCCEecccE---EEECCceECccCC--------EecCCCCCCCC
Confidence 34567999988877522 3356778888774 58888877654
No 136
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.36 E-value=20 Score=30.38 Aligned_cols=36 Identities=17% Similarity=0.420 Sum_probs=26.0
Q ss_pred CCCCccccccCccCCCCc-eEEeccCCcccHHHHHHH
Q 005363 646 QEQEPCCICQEEYNDGED-TGILHCGHDFHTSCIKQW 681 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~de-l~~LpCGHiFH~~CI~qW 681 (700)
.+...|.+|...|..-.. -..-.||.+||..|....
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 455689999999965432 223479999999997543
No 137
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.94 E-value=14 Score=29.79 Aligned_cols=40 Identities=25% Similarity=0.540 Sum_probs=26.0
Q ss_pred CCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 648 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 648 d~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
...|..|-+.+...+.+ ..-+..||..|. .|-.|++.|..
T Consensus 9 ~~~C~~C~~~I~~~~~v--~a~~~~~H~~CF--------~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKV--SSLGKDWHKFCL--------KCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEE--EETTEEEETTTC--------BCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEE--EECCeEeeCCCC--------CCCCCCCccCC
Confidence 45688888877755533 235667777764 57777777653
No 138
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=32.79 E-value=35 Score=37.15 Aligned_cols=48 Identities=17% Similarity=0.344 Sum_probs=33.3
Q ss_pred CCCCCCccccccCccCCCCceEEe--ccCCcccHHHHHHHHh----------cCCCCCCcCcC
Q 005363 644 SQQEQEPCCICQEEYNDGEDTGIL--HCGHDFHTSCIKQWLM----------HKNLCPICKTT 694 (700)
Q Consensus 644 ~~~ed~~C~ICLEef~~~del~~L--pCGHiFH~~CI~qWL~----------~knsCPICR~~ 694 (700)
.+..+..|.||-+. ++.+.+= .|...||.+||+.++- .+-.|=+|.-.
T Consensus 89 ~DG~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 89 DDGYQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSSSBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCCcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 34557789999753 3333333 6999999999999982 23358888754
No 139
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=32.60 E-value=20 Score=29.54 Aligned_cols=34 Identities=18% Similarity=0.383 Sum_probs=24.7
Q ss_pred CCccccccCccCCCCc-eEEeccCCcccHHHHHHH
Q 005363 648 QEPCCICQEEYNDGED-TGILHCGHDFHTSCIKQW 681 (700)
Q Consensus 648 d~~C~ICLEef~~~de-l~~LpCGHiFH~~CI~qW 681 (700)
+..|.+|...|..-.. -..-.||.+||..|....
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 3579999999875432 223379999999997543
No 140
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=32.27 E-value=7.6 Score=43.31 Aligned_cols=48 Identities=23% Similarity=0.419 Sum_probs=31.2
Q ss_pred CCCccccccCccCC-CCceEEeccCCcccHHHHHHHHh-----cCCCCCCcCcC
Q 005363 647 EQEPCCICQEEYND-GEDTGILHCGHDFHTSCIKQWLM-----HKNLCPICKTT 694 (700)
Q Consensus 647 ed~~C~ICLEef~~-~del~~LpCGHiFH~~CI~qWL~-----~knsCPICR~~ 694 (700)
.....|||...+.. +..+.+-.|.-.||..|+.---. .+..||.|+..
T Consensus 35 ~~~~yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 35 PPPVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CCCEETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CCCeEEeCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 33445599887753 33444557999999999842211 23569999853
No 141
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=32.06 E-value=15 Score=35.02 Aligned_cols=46 Identities=22% Similarity=0.461 Sum_probs=31.0
Q ss_pred CCCccccccCccCC--CCceEEeccCCcccHHHHHHHHhcCC--CCCCcCc
Q 005363 647 EQEPCCICQEEYND--GEDTGILHCGHDFHTSCIKQWLMHKN--LCPICKT 693 (700)
Q Consensus 647 ed~~C~ICLEef~~--~del~~LpCGHiFH~~CI~qWL~~kn--sCPICR~ 693 (700)
.+..|.+|...|.. +....+..|.|.+|..|- .|+.... .|=+|.+
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 56789999998743 334555699999999997 2333221 2666654
No 142
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.53 E-value=20 Score=29.60 Aligned_cols=42 Identities=31% Similarity=0.578 Sum_probs=28.6
Q ss_pred CCCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 646 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 646 ~ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
.....|..|-+.+...+.+. .-+..||..|. .|-.|++.|..
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~--a~~~~wH~~CF--------~C~~C~~~L~~ 54 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLC--VNGHFFHRSCF--------RCHTCEATLWP 54 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCC--BTTBCCBTTTC--------BCSSSCCBCCT
T ss_pred CCCCCCcccCCCcccceEEE--ECCCeeCCCcC--------EEcCCCCCcCC
Confidence 34567999998887666433 35678888884 57777766543
No 143
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=30.92 E-value=9.1 Score=34.59 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=16.3
Q ss_pred EeccCCcccHHHHHHHHhcCCCCCCcCcCc
Q 005363 666 ILHCGHDFHTSCIKQWLMHKNLCPICKTTA 695 (700)
Q Consensus 666 ~LpCGHiFH~~CI~qWL~~knsCPICR~~L 695 (700)
+..||+.|. .-+.....||.|+..-
T Consensus 70 C~~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 70 CRKCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp BTTTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred hhhCcCeec-----ccCCCCCCCcCCCCCc
Confidence 456999991 2223445799999753
No 144
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=30.13 E-value=13 Score=30.07 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=28.5
Q ss_pred CCCccccccCccCCCCceEEeccCCcccH-HHHHHHHhcCCCCCCcCcCc
Q 005363 647 EQEPCCICQEEYNDGEDTGILHCGHDFHT-SCIKQWLMHKNLCPICKTTA 695 (700)
Q Consensus 647 ed~~C~ICLEef~~~del~~LpCGHiFH~-~CI~qWL~~knsCPICR~~L 695 (700)
+-..|..|...+.... . ...=+..||. .|..+- ....|-.|...+
T Consensus 26 ~CF~C~~C~~~L~~~~-~-~~~~g~~yC~~~cy~~~--f~~~C~~C~~~~ 71 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGG-H-AEHEGKPYCNHPCYSAM--FGPKGFGRGGAE 71 (76)
T ss_dssp TTCBCTTTCCBCCTTT-E-EEETTEEEETTTHHHHH--SSCCCSSCCCSS
T ss_pred CCCCccccCccCCCCc-e-ECcCCeEeeCHHHHHHH--hCccCCCcCCce
Confidence 4467888888776653 1 2334677888 587663 445587777544
No 145
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.87 E-value=26 Score=28.54 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=25.1
Q ss_pred CCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCc
Q 005363 647 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 695 (700)
Q Consensus 647 ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~L 695 (700)
....|..|-+.+... .+..-+..||.+|. .|-.|++.|
T Consensus 14 ~~~~C~~C~~~I~~~---~~~a~~~~~H~~CF--------~C~~C~~~L 51 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV---FVKLRDRHRHPECY--------VCTDCGTNL 51 (79)
T ss_dssp CCCCCSSSCCCCCSS---CEECSSCEECTTTT--------SCSSSCCCH
T ss_pred CCCccccCCCCccCc---EEEECcceeCcCcC--------eeCCCCCCC
Confidence 456788888877642 13445778887775 577777665
No 146
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=28.79 E-value=5.8 Score=31.87 Aligned_cols=41 Identities=34% Similarity=0.764 Sum_probs=25.0
Q ss_pred CccccccCccCCCCceEEec--cC-CcccHHHHHHHHh----cCCCCCCcCc
Q 005363 649 EPCCICQEEYNDGEDTGILH--CG-HDFHTSCIKQWLM----HKNLCPICKT 693 (700)
Q Consensus 649 ~~C~ICLEef~~~del~~Lp--CG-HiFH~~CI~qWL~----~knsCPICR~ 693 (700)
..| ||..... +..+..=. |. ..||..|+. |. .+-.||.|+.
T Consensus 11 ~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 11 TYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp EET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 345 9987642 33222224 65 689999997 44 2345999865
No 147
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=28.78 E-value=11 Score=31.33 Aligned_cols=48 Identities=25% Similarity=0.424 Sum_probs=30.9
Q ss_pred CCCccccccCccCCC-CceEEeccCCcccHHHHHHHHh-----cCCCCCCcCcC
Q 005363 647 EQEPCCICQEEYNDG-EDTGILHCGHDFHTSCIKQWLM-----HKNLCPICKTT 694 (700)
Q Consensus 647 ed~~C~ICLEef~~~-del~~LpCGHiFH~~CI~qWL~-----~knsCPICR~~ 694 (700)
.....+||...+... ..+..-.|.-.||..|+.---. .+..||.|+..
T Consensus 8 ~~~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 8 TVPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CCCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred CCeeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 334456898876533 3344447999999999943211 34569999864
No 148
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.46 E-value=22 Score=29.39 Aligned_cols=40 Identities=25% Similarity=0.585 Sum_probs=27.5
Q ss_pred CCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcC
Q 005363 647 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTAL 696 (700)
Q Consensus 647 ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll 696 (700)
....|.-|-+.+...+.+.. -+..||.+|. .|-.|++.|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a--~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA--LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE--TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE--CCcccccccC--------CcCcCCCCcC
Confidence 45679999888876654333 4677887774 5778877664
No 149
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=28.10 E-value=43 Score=32.26 Aligned_cols=48 Identities=19% Similarity=0.402 Sum_probs=32.1
Q ss_pred CCCCCCCccccccCccCCCCceEEe---ccCCcccHHHHHHHHhc----------CCCCCCcCcC
Q 005363 643 GSQQEQEPCCICQEEYNDGEDTGIL---HCGHDFHTSCIKQWLMH----------KNLCPICKTT 694 (700)
Q Consensus 643 ~~~~ed~~C~ICLEef~~~del~~L---pCGHiFH~~CI~qWL~~----------knsCPICR~~ 694 (700)
+.+..+..|.||-+. .++..- .|...||.+||+.++-. +-.|=+|.-.
T Consensus 74 DeDG~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~ 134 (159)
T 3a1b_A 74 DDDGYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHK 134 (159)
T ss_dssp CTTSSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSS
T ss_pred CCCCCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCc
Confidence 344557789999753 333333 48899999999998742 2248777643
No 150
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.25 E-value=25 Score=29.44 Aligned_cols=39 Identities=23% Similarity=0.520 Sum_probs=22.5
Q ss_pred CCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcC
Q 005363 647 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTAL 696 (700)
Q Consensus 647 ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll 696 (700)
....|..|-+.+. ++. +..-+..||..|. .|-.|++.|.
T Consensus 24 ~~~~C~~C~~~I~-~~~--v~a~~~~~H~~CF--------~C~~C~~~L~ 62 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPF--LVALGKSWHPEEF--------NCAHCKNTMA 62 (90)
T ss_dssp CCCBBSSSCCBCC-SCE--EEETTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCccCCCEec-ceE--EEECCccccccCC--------ccCCCCCCCC
Confidence 3456777777663 221 2345666776664 5666666654
No 151
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=26.38 E-value=14 Score=25.85 Aligned_cols=13 Identities=31% Similarity=0.631 Sum_probs=9.7
Q ss_pred CCCCCCcCcCcCC
Q 005363 685 KNLCPICKTTALS 697 (700)
Q Consensus 685 knsCPICR~~Ll~ 697 (700)
+..||+|+..+++
T Consensus 3 k~~CpvCk~q~Pd 15 (28)
T 2jvx_A 3 DFCCPKCQYQAPD 15 (28)
T ss_dssp CEECTTSSCEESS
T ss_pred cccCccccccCcC
Confidence 4569999987764
No 152
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=26.15 E-value=51 Score=29.17 Aligned_cols=49 Identities=10% Similarity=0.062 Sum_probs=34.0
Q ss_pred CccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 649 EPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 649 ~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
..|..|...+.+....-...=+..||..|..+-+..+..|-.|.+.|..
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 4688888777531111133456789999998877666689999998864
No 153
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=25.97 E-value=8.5 Score=29.80 Aligned_cols=42 Identities=21% Similarity=0.463 Sum_probs=27.7
Q ss_pred ccccCccCCCCceEEeccCCcccHHHHHHHH---hcCCCCCCcCc
Q 005363 652 CICQEEYNDGEDTGILHCGHDFHTSCIKQWL---MHKNLCPICKT 693 (700)
Q Consensus 652 ~ICLEef~~~del~~LpCGHiFH~~CI~qWL---~~knsCPICR~ 693 (700)
.||...+.....+..-.|..-||..|+.--- ..+..||.|+.
T Consensus 7 C~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 7 CFCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp STTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EEeCCcCCCCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 4787766543444444799999999985322 23456999975
No 154
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=25.21 E-value=10 Score=33.13 Aligned_cols=43 Identities=28% Similarity=0.497 Sum_probs=25.9
Q ss_pred CCCccccccCccCCCCceEEeccC---CcccHHHHHHHHh----cCCCCCC-cCc
Q 005363 647 EQEPCCICQEEYNDGEDTGILHCG---HDFHTSCIKQWLM----HKNLCPI-CKT 693 (700)
Q Consensus 647 ed~~C~ICLEef~~~del~~LpCG---HiFH~~CI~qWL~----~knsCPI-CR~ 693 (700)
+...| ||..... ++.+..=.|. ..||..||. |. .+..||. |++
T Consensus 25 ~~~yC-iC~~~~~-g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 25 EEVYC-FCRNVSY-GPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CSCCS-TTTCCCS-SSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCcEE-EeCCCCC-CCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 34456 9987533 3422222444 689999985 32 2446999 874
No 155
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.99 E-value=42 Score=27.22 Aligned_cols=40 Identities=23% Similarity=0.508 Sum_probs=25.0
Q ss_pred CccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcCC
Q 005363 649 EPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 697 (700)
Q Consensus 649 ~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll~ 697 (700)
..|..|-+.+...+.+ +..-+..||..|. .|-.|++.|..
T Consensus 16 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQN-VEYKGTVWHKDCF--------TCSNCKQVIGT 55 (82)
T ss_dssp CBCSSSCCBCCSSSCE-EECSSCEEETTTC--------CCSSSCCCCTT
T ss_pred CcCccCCcccccCceE-EEECccccccccC--------chhhCCCccCC
Confidence 5688887777655432 2234667777664 57777776643
No 156
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.58 E-value=33 Score=26.99 Aligned_cols=11 Identities=9% Similarity=0.416 Sum_probs=5.0
Q ss_pred CCcccHHHHHH
Q 005363 670 GHDFHTSCIKQ 680 (700)
Q Consensus 670 GHiFH~~CI~q 680 (700)
+..||..|..+
T Consensus 51 ~~~yC~~cy~~ 61 (70)
T 2d8z_A 51 DFAYCLNCFCD 61 (70)
T ss_dssp SSEECHHHHHH
T ss_pred CeEECHHHHHH
Confidence 34445554443
No 157
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.41 E-value=36 Score=26.79 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=13.1
Q ss_pred CccccccCccCCCCceEEeccCCcccHHHHHHH
Q 005363 649 EPCCICQEEYNDGEDTGILHCGHDFHTSCIKQW 681 (700)
Q Consensus 649 ~~C~ICLEef~~~del~~LpCGHiFH~~CI~qW 681 (700)
..|..|...+.... -...-+..||..|..+-
T Consensus 32 F~C~~C~~~L~~~~--f~~~~g~~yC~~c~~~~ 62 (70)
T 2d8x_A 32 FRCDLCQEVLADIG--FVKNAGRHLCRPCHNRE 62 (70)
T ss_dssp SBCSSSCCBCSSSC--CEEETTEEECHHHHHHH
T ss_pred CEeCCCCCcCCCCc--cEeECCeEECHHHhhhh
Confidence 34555544444332 11223444555555443
No 158
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=23.33 E-value=30 Score=31.12 Aligned_cols=11 Identities=27% Similarity=1.029 Sum_probs=10.2
Q ss_pred ccHHHHHHHHh
Q 005363 673 FHTSCIKQWLM 683 (700)
Q Consensus 673 FH~~CI~qWL~ 683 (700)
||+.|+.+|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 159
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=23.06 E-value=27 Score=41.00 Aligned_cols=48 Identities=23% Similarity=0.526 Sum_probs=35.0
Q ss_pred CCCccccccCccCCCCc-------eEEeccCCcc--------------------cHHHHHHHHh--------cCCCCCCc
Q 005363 647 EQEPCCICQEEYNDGED-------TGILHCGHDF--------------------HTSCIKQWLM--------HKNLCPIC 691 (700)
Q Consensus 647 ed~~C~ICLEef~~~de-------l~~LpCGHiF--------------------H~~CI~qWL~--------~knsCPIC 691 (700)
+...|.-|+.++.++.+ +-++.||-.| |.+|-.++-. +-..||.|
T Consensus 105 D~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~C 184 (772)
T 4g9i_A 105 DIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPVC 184 (772)
T ss_dssp CCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTTT
T ss_pred chhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCccC
Confidence 45679999999888764 4466788665 9999988853 12359999
Q ss_pred CcC
Q 005363 692 KTT 694 (700)
Q Consensus 692 R~~ 694 (700)
-=.
T Consensus 185 GP~ 187 (772)
T 4g9i_A 185 GPS 187 (772)
T ss_dssp SCC
T ss_pred Cce
Confidence 643
No 160
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=23.00 E-value=30 Score=31.00 Aligned_cols=11 Identities=45% Similarity=1.340 Sum_probs=10.2
Q ss_pred ccHHHHHHHHh
Q 005363 673 FHTSCIKQWLM 683 (700)
Q Consensus 673 FH~~CI~qWL~ 683 (700)
||+.|+.+|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 161
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.37 E-value=38 Score=26.83 Aligned_cols=39 Identities=21% Similarity=0.549 Sum_probs=19.7
Q ss_pred CccccccCccCC--CCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcC
Q 005363 649 EPCCICQEEYND--GEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTAL 696 (700)
Q Consensus 649 ~~C~ICLEef~~--~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll 696 (700)
..|.-|-+.+.. .+.+ +..-+..||.+|. .|-.|++.|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~-~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKY-ISFEERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp CSBTTTTBCCCCSSSCSC-EECSSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCcCCCccccCCCCcce-EEECCcccCcccC--------EeccCCCcCC
Confidence 456666666553 1111 2234556666553 4556665543
No 162
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=22.04 E-value=14 Score=29.71 Aligned_cols=38 Identities=18% Similarity=0.459 Sum_probs=26.7
Q ss_pred CCccccccCccCCCCc---eEEec--cCCcccHHHHHHHHhcC
Q 005363 648 QEPCCICQEEYNDGED---TGILH--CGHDFHTSCIKQWLMHK 685 (700)
Q Consensus 648 d~~C~ICLEef~~~de---l~~Lp--CGHiFH~~CI~qWL~~k 685 (700)
...|+-|.-.++..+- +.... |++.||..|..+|-...
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 3568888777766552 22223 89999999999997644
No 163
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=21.47 E-value=31 Score=39.89 Aligned_cols=49 Identities=27% Similarity=0.593 Sum_probs=34.9
Q ss_pred CCCccccccCccCCCCc-------eEEeccCCcc--------------------cHHHHHHHHh--------cCCCCCCc
Q 005363 647 EQEPCCICQEEYNDGED-------TGILHCGHDF--------------------HTSCIKQWLM--------HKNLCPIC 691 (700)
Q Consensus 647 ed~~C~ICLEef~~~de-------l~~LpCGHiF--------------------H~~CI~qWL~--------~knsCPIC 691 (700)
+...|.-|+.++.++.+ +-++.||-.| |.+|-.++-. +-..||.|
T Consensus 16 D~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp~C 95 (657)
T 3ttc_A 16 DAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACPEC 95 (657)
T ss_dssp CBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCTTT
T ss_pred chhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCccc
Confidence 45679999999887664 3466787665 9999998753 22359999
Q ss_pred CcCc
Q 005363 692 KTTA 695 (700)
Q Consensus 692 R~~L 695 (700)
-=.+
T Consensus 96 GP~l 99 (657)
T 3ttc_A 96 GPYL 99 (657)
T ss_dssp SCCE
T ss_pred Cccc
Confidence 6443
No 164
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.41 E-value=42 Score=26.42 Aligned_cols=27 Identities=26% Similarity=0.620 Sum_probs=12.0
Q ss_pred ccccccCccCCCCceEEeccCCcccHHH
Q 005363 650 PCCICQEEYNDGEDTGILHCGHDFHTSC 677 (700)
Q Consensus 650 ~C~ICLEef~~~del~~LpCGHiFH~~C 677 (700)
.|..|.+.+...+.+ +..-+..||..|
T Consensus 7 ~C~~C~~~I~~~~~~-~~a~~~~~H~~C 33 (72)
T 1wyh_A 7 GCSACGETVMPGSRK-LEYGGQTWHEHC 33 (72)
T ss_dssp BCSSSCCBCCSSSCE-ECSTTCCEETTT
T ss_pred CCccCCCccccCccE-EEECccccCccc
Confidence 455555555443211 122345555544
No 165
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.41 E-value=49 Score=26.07 Aligned_cols=38 Identities=21% Similarity=0.574 Sum_probs=17.5
Q ss_pred ccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcC
Q 005363 650 PCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTAL 696 (700)
Q Consensus 650 ~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll 696 (700)
.|..|-+.+...+.+ +..-+..||..|. .|-.|++.|.
T Consensus 7 ~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x4k_A 7 GCQECKKTIMPGTRK-MEYKGSSWHETCF--------ICHRCQQPIG 44 (72)
T ss_dssp CBSSSCCCCCSSSCE-EEETTEEEETTTT--------CCSSSCCCCC
T ss_pred CCccCCCcccCCceE-EEECcCeecccCC--------cccccCCccC
Confidence 455665555543221 1123445555543 3555555443
No 166
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.23 E-value=49 Score=27.03 Aligned_cols=39 Identities=13% Similarity=0.392 Sum_probs=22.0
Q ss_pred CCCccccccCccCCCCceEEeccCCcccHHHHHHHHhcCCCCCCcCcCcC
Q 005363 647 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTAL 696 (700)
Q Consensus 647 ed~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~~knsCPICR~~Ll 696 (700)
....|.-|-+.+.. .. +..-+..||.+|. .|-.|++.|.
T Consensus 14 ~~~~C~~C~~~I~~-~~--v~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 2cor_A 14 GKYICQKCHAIIDE-QP--LIFKNDPYHPDHF--------NCANCGKELT 52 (79)
T ss_dssp CCCBCTTTCCBCCS-CC--CCCSSSCCCTTTS--------BCSSSCCBCC
T ss_pred CCCCCccCCCEecc-eE--EEECcceeCCCCC--------EeCCCCCccC
Confidence 34567777776662 21 2234566776663 5666666654
No 167
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.94 E-value=45 Score=26.32 Aligned_cols=34 Identities=12% Similarity=0.160 Sum_probs=18.8
Q ss_pred CCccccccCccCCCCceEEeccCCcccHHHHHHHHh
Q 005363 648 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM 683 (700)
Q Consensus 648 d~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL~ 683 (700)
-..|..|...+.... -...=+..||..|..+.+.
T Consensus 33 CF~C~~C~~~L~~~~--~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 33 CFVCSTCRAQLRGQH--FYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp TCBCSSSCCBCTTSC--EEESSSCEEEHHHHHHHHH
T ss_pred CCcccccCCcCCcCc--CEeeCCeEECHHHHHHHHc
Confidence 345666666663221 1233456777777766654
No 168
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.27 E-value=39 Score=26.56 Aligned_cols=32 Identities=13% Similarity=0.308 Sum_probs=14.2
Q ss_pred CccccccCccCCCCceEEeccCCcccHHHHHHHH
Q 005363 649 EPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWL 682 (700)
Q Consensus 649 ~~C~ICLEef~~~del~~LpCGHiFH~~CI~qWL 682 (700)
..|..|...+.... ....=+..||..|..+.+
T Consensus 32 F~C~~C~~~L~~~~--~~~~~~~~yC~~cy~~~f 63 (69)
T 2cur_A 32 FVCVTCSKKLAGQR--FTAVEDQYYCVDCYKNFV 63 (69)
T ss_dssp TBCTTTCCBCTTSC--EEECSSCEEEHHHHHHHH
T ss_pred CEECCCCCCCCCCc--cEeECCEEECHHHhHHHh
Confidence 34555555543211 112234555666655443
Done!