BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005364
(700 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BTV|A Chain A, Atomic Model For Bluetongue Virus (Btv) Core
pdb|2BTV|B Chain B, Atomic Model For Bluetongue Virus (Btv) Core
Length = 901
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 194 HKGSDRKGVGLYNEAGRNELKMYEAEYEASLKNAGLSGNL--NGNENQQSGDKIIGVNSE 251
H+G + + +N L + AE+ A ++NA L G++ NGN + D IG SE
Sbjct: 153 HRGMEVAEPEVLGVEFKNVLPVLTAEHRAMIQNA-LDGSIIENGNVATRDVDVFIGACSE 211
Query: 252 PI 253
PI
Sbjct: 212 PI 213
>pdb|1WNV|A Chain A, D136a Mutant Of Heme Oxygenase From Corynebacterium
Diphtheriae (Hmuo)
pdb|1WNV|B Chain B, D136a Mutant Of Heme Oxygenase From Corynebacterium
Diphtheriae (Hmuo)
pdb|1WNV|C Chain C, D136a Mutant Of Heme Oxygenase From Corynebacterium
Diphtheriae (Hmuo)
Length = 215
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 194 HKGSDRKGVGLYNEAGRNELKMYEAEYEASLKNAGLS 230
H G D + +G Y+ G +LK+Y+ EY L N LS
Sbjct: 150 HYGVDPEALGFYHFEGIAKLKVYKDEYREKLNNLELS 186
>pdb|1WNX|A Chain A, D136e Mutant Of Heme Oxygenase From Corynebacterium
Diphtheriae (Hmuo)
pdb|1WNX|B Chain B, D136e Mutant Of Heme Oxygenase From Corynebacterium
Diphtheriae (Hmuo)
Length = 215
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 194 HKGSDRKGVGLYNEAGRNELKMYEAEYEASLKNAGLS 230
H G D + +G Y+ G +LK+Y+ EY L N LS
Sbjct: 150 HYGVDPEALGFYHFEGIAKLKVYKDEYREKLNNLELS 186
>pdb|1IW0|A Chain A, Crystal Structure Of A Heme Oxygenase (Hmuo) From
Corynebacterium Diphtheriae Complexed With Heme In The
Ferric State
pdb|1IW0|B Chain B, Crystal Structure Of A Heme Oxygenase (Hmuo) From
Corynebacterium Diphtheriae Complexed With Heme In The
Ferric State
pdb|1IW0|C Chain C, Crystal Structure Of A Heme Oxygenase (Hmuo) From
Corynebacterium Diphtheriae Complexed With Heme In The
Ferric State
pdb|1IW1|A Chain A, Crystal Structure Of A Heme Oxygenase (Hmuo) From
Corynebacterium Diphtheriae Complexed With Heme In The
Ferrous State
pdb|1IW1|B Chain B, Crystal Structure Of A Heme Oxygenase (Hmuo) From
Corynebacterium Diphtheriae Complexed With Heme In The
Ferrous State
pdb|1IW1|C Chain C, Crystal Structure Of A Heme Oxygenase (Hmuo) From
Corynebacterium Diphtheriae Complexed With Heme In The
Ferrous State
pdb|1V8X|A Chain A, Crystal Structure Of The Dioxygen-Bound Heme Oxygenase
From Corynebacterium Diphtheriae
pdb|1V8X|B Chain B, Crystal Structure Of The Dioxygen-Bound Heme Oxygenase
From Corynebacterium Diphtheriae
pdb|1V8X|C Chain C, Crystal Structure Of The Dioxygen-Bound Heme Oxygenase
From Corynebacterium Diphtheriae
pdb|1WZD|A Chain A, Crystal Structure Of An Artificial Metalloprotein:
Fe(10-Ch2ch2cooh- Salophen)WILD TYPE HEME OXYGENASE
pdb|1WZD|B Chain B, Crystal Structure Of An Artificial Metalloprotein:
Fe(10-Ch2ch2cooh- Salophen)WILD TYPE HEME OXYGENASE
pdb|1WZF|A Chain A, Crystal Structure Of An Artificial Metalloprotein:
Fe(10-Cooh- Salophen)WILD TYPE HEME OXYGENASE
pdb|1WZF|B Chain B, Crystal Structure Of An Artificial Metalloprotein:
Fe(10-Cooh- Salophen)WILD TYPE HEME OXYGENASE
pdb|1WZG|A Chain A, Crystal Structure Of An Artificial Metalloprotein:
Fe(Salophen)WILD Type Heme Oxygenase
pdb|1WZG|B Chain B, Crystal Structure Of An Artificial Metalloprotein:
Fe(Salophen)WILD Type Heme Oxygenase
pdb|2Z68|A Chain A, Crystal Structure Of An Artificial Metalloprotein: Cr[n-
Salicylidene-4-Amino-3-Hydroxyhydrocinnamic Acid]WILD
Type Heme Oxygenase
pdb|2Z68|B Chain B, Crystal Structure Of An Artificial Metalloprotein: Cr[n-
Salicylidene-4-Amino-3-Hydroxyhydrocinnamic Acid]WILD
Type Heme Oxygenase
pdb|3I8R|A Chain A, Crystal Structure Of The Heme Oxygenase From
Corynebacterium Diphtheriae (Hmuo) In Complex With Heme
Binding Ditiothreit
pdb|3I8R|B Chain B, Crystal Structure Of The Heme Oxygenase From
Corynebacterium Diphtheriae (Hmuo) In Complex With Heme
Binding Ditiothreit
pdb|3I8R|C Chain C, Crystal Structure Of The Heme Oxygenase From
Corynebacterium Diphtheriae (Hmuo) In Complex With Heme
Binding Ditiothreit
pdb|3MOO|A Chain A, Crystal Structure Of The Hmuo, Heme Oxygenase From
Corynebacterium Diphtheriae, In Complex With Azide-Bound
Verdoheme
pdb|3MOO|B Chain B, Crystal Structure Of The Hmuo, Heme Oxygenase From
Corynebacterium Diphtheriae, In Complex With Azide-Bound
Verdoheme
Length = 215
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 194 HKGSDRKGVGLYNEAGRNELKMYEAEYEASLKNAGLS 230
H G D + +G Y+ G +LK+Y+ EY L N LS
Sbjct: 150 HYGVDPEALGFYHFEGIAKLKVYKDEYREKLNNLELS 186
>pdb|1WNW|A Chain A, D136n Mutant Of Heme Oxygenase From Corynebacterium
Diphtheriae (hmuo)
pdb|1WNW|B Chain B, D136n Mutant Of Heme Oxygenase From Corynebacterium
Diphtheriae (hmuo)
pdb|1WNW|C Chain C, D136n Mutant Of Heme Oxygenase From Corynebacterium
Diphtheriae (hmuo)
Length = 215
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 194 HKGSDRKGVGLYNEAGRNELKMYEAEYEASLKNAGLS 230
H G D + +G Y+ G +LK+Y+ EY L N LS
Sbjct: 150 HYGVDPEALGFYHFEGIAKLKVYKDEYREKLNNLELS 186
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,367,982
Number of Sequences: 62578
Number of extensions: 778089
Number of successful extensions: 1595
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1591
Number of HSP's gapped (non-prelim): 6
length of query: 700
length of database: 14,973,337
effective HSP length: 106
effective length of query: 594
effective length of database: 8,340,069
effective search space: 4954000986
effective search space used: 4954000986
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)