Query 005364
Match_columns 700
No_of_seqs 122 out of 142
Neff 3.2
Searched_HMMs 46136
Date Thu Mar 28 22:17:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005364.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005364hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04765 DUF616: Protein of un 100.0 1E-108 3E-113 846.3 26.4 295 388-699 1-296 (305)
2 cd04194 GT8_A4GalT_like A4GalT 91.1 0.26 5.7E-06 48.9 4.3 96 486-586 29-131 (248)
3 cd00505 Glyco_transf_8 Members 87.1 2 4.3E-05 43.2 7.2 158 487-679 30-199 (246)
4 PF01501 Glyco_transf_8: Glyco 76.4 2.2 4.7E-05 40.9 2.9 48 536-585 86-133 (250)
5 COG1681 FlaB Archaeal flagelli 71.0 4.3 9.4E-05 42.0 3.6 28 59-86 4-31 (209)
6 PRK08541 flagellin; Validated 65.4 6.5 0.00014 40.7 3.6 28 59-86 4-31 (211)
7 PF01917 Arch_flagellin: Archa 54.4 12 0.00027 36.6 3.3 26 61-86 3-28 (190)
8 PRK08455 fliL flagellar basal 52.0 34 0.00074 34.4 5.9 22 67-88 25-46 (182)
9 PF15243 ANAPC15: Anaphase-pro 49.3 24 0.00052 32.5 4.0 23 211-233 28-50 (92)
10 PF04415 DUF515: Protein of un 47.5 18 0.00039 41.0 3.5 25 592-616 342-366 (416)
11 cd06429 GT8_like_1 GT8_like_1 46.0 29 0.00063 36.3 4.6 96 486-585 28-148 (257)
12 PF10446 DUF2457: Protein of u 43.1 76 0.0016 36.6 7.4 20 275-294 98-117 (458)
13 PF09451 ATG27: Autophagy-rela 39.5 26 0.00056 36.7 3.1 40 99-138 226-268 (268)
14 PF09307 MHC2-interact: CLIP, 37.6 11 0.00024 35.9 0.0 39 49-88 21-59 (114)
15 cd02515 Glyco_transf_6 Glycosy 34.1 33 0.00071 37.0 2.8 115 444-566 20-141 (271)
16 PF05637 Glyco_transf_34: gala 34.0 29 0.00062 35.9 2.3 43 636-679 144-192 (239)
17 PF01034 Syndecan: Syndecan do 32.8 15 0.00033 32.0 0.1 27 63-89 16-42 (64)
18 cd06432 GT8_HUGT1_C_like The C 32.7 36 0.00078 35.2 2.8 45 539-585 85-130 (248)
19 cd06431 GT8_LARGE_C LARGE cata 31.9 46 0.001 35.2 3.5 99 485-585 28-135 (280)
20 PRK05529 cell division protein 30.9 35 0.00075 35.7 2.3 21 46-67 22-42 (255)
21 PF08391 Ly49: Ly49-like prote 30.6 17 0.00036 34.9 0.0 18 63-80 7-24 (119)
22 cd06430 GT8_like_2 GT8_like_2 29.9 80 0.0017 34.4 4.9 34 539-572 87-120 (304)
23 PF03407 Nucleotid_trans: Nucl 29.9 53 0.0011 32.1 3.3 86 552-680 69-155 (212)
24 PF07423 DUF1510: Protein of u 28.2 36 0.00078 35.5 1.9 16 203-218 143-158 (217)
25 PF03452 Anp1: Anp1; InterPro 26.9 63 0.0014 34.8 3.5 47 539-588 133-179 (269)
26 PF12911 OppC_N: N-terminal TM 26.6 23 0.00049 28.2 0.1 26 60-87 16-41 (56)
27 PF11119 DUF2633: Protein of u 26.6 32 0.00069 29.7 1.0 43 60-102 6-48 (59)
28 PHA02849 putative transmembran 26.4 70 0.0015 29.2 3.1 24 59-82 10-33 (82)
29 PF10731 Anophelin: Thrombin i 25.7 81 0.0018 27.6 3.2 23 66-88 7-30 (65)
30 PLN02718 Probable galacturonos 25.5 1.5E+02 0.0033 35.4 6.4 95 486-585 341-452 (603)
31 COG4726 PilX Tfp pilus assembl 25.3 51 0.0011 34.2 2.3 25 50-80 7-31 (196)
32 PF14991 MLANA: Protein melan- 24.4 24 0.00051 34.0 -0.2 30 60-89 26-55 (118)
33 PF14155 DUF4307: Domain of un 24.2 81 0.0018 29.4 3.3 29 60-88 5-33 (112)
34 PLN02742 Probable galacturonos 23.3 87 0.0019 36.8 3.9 41 542-584 346-386 (534)
35 PF11239 DUF3040: Protein of u 22.8 85 0.0018 27.5 3.0 19 59-77 40-58 (82)
36 PF07790 DUF1628: Protein of u 22.3 1.1E+02 0.0023 26.4 3.4 28 59-86 3-30 (80)
37 PF03314 DUF273: Protein of un 21.6 73 0.0016 33.6 2.7 69 542-616 35-105 (222)
38 PF02532 PsbI: Photosystem II 21.5 1.9E+02 0.0041 23.0 4.2 25 68-92 8-32 (36)
39 PF06781 UPF0233: Uncharacteri 21.3 2.1E+02 0.0046 26.3 5.2 31 58-88 27-57 (87)
40 PF12216 m04gp34like: Immune e 20.7 48 0.001 35.7 1.2 24 60-83 230-255 (272)
No 1
>PF04765 DUF616: Protein of unknown function (DUF616); InterPro: IPR006852 The entry represents a protein of unknown function. The function of is unknown although a number of the members are thought to be glycosyltransferases.
Probab=100.00 E-value=1.3e-108 Score=846.28 Aligned_cols=295 Identities=55% Similarity=0.997 Sum_probs=283.3
Q ss_pred ceeeeeeccCCCCCCCCCCCcCCccchHHHhhhccccC-cccccccccCCCCCCCCCCcCCHhhHhhhccCcEEEEeeee
Q 005364 388 FLQYTEVEEKPDGEAEWEPRFAGHQSLQEREESFLARD-QKINCGFVKAPEGYPSTGFDLAEDDANYNSRCHIAVISCIF 466 (700)
Q Consensus 388 ~L~Yv~~e~~~~~~~~~~~~FgG~~sl~eR~~sF~~~~-~~vhCGF~~g~~~~~~~GFdi~e~D~~~M~~CKIVVYTAIF 466 (700)
||+||.+|+++. +.++++|||||||+||++||++++ |+|||||++ +|||||+|.|+.||++|+||||||||
T Consensus 1 nl~y~~~~~~~~--~~~~~~f~g~~s~~~R~~sf~~~~~~~v~Cgf~~------~~gf~i~~~d~~~m~~c~vvV~saIF 72 (305)
T PF04765_consen 1 NLTYIEEENKPE--SGRGPSFGGNQSLEERESSFDIQEDMTVHCGFVK------NTGFDISESDRRYMEKCRVVVYSAIF 72 (305)
T ss_pred CCcccccccccc--cCCCCCcCCcCCHHHHHHhcCCCCCceecccccc------CCCCCCCHHHHHHHhcCCEEEEEEec
Confidence 699999988776 778999999999999999999976 699999999 69999999999999999999999999
Q ss_pred CCCccccCCCCCcccccCCCCceEEEEecccchhhhcccCCCCCCCCcccceEEEEccCCCCcccccccCccccccccCC
Q 005364 467 GNSDRLRIPVGKTVTRLSRKNVCFVMFTDELTLQTLSSEGQIPDRTGFIGLWKMVVVKNLPYDDMRRVGKIPKLLPHRLF 546 (700)
Q Consensus 467 GnYD~L~qP~~~~is~~s~knVcFicFTDe~tL~sl~~~g~vpd~~~~vG~WRIV~VknlPy~D~RRngRipKiLpHRLF 546 (700)
|+||.|+||.+ +++.+.++|||+||||+.|+++|+++|.++++.+++|+||||+|+++||.|+||+||+||||||+||
T Consensus 73 G~yD~l~qP~~--i~~~s~~~vcf~mF~D~~t~~~l~~~~~~~~~~~~ig~WrIv~v~~lp~~d~rr~~r~~K~lpHrlf 150 (305)
T PF04765_consen 73 GNYDKLRQPKN--ISEYSKKNVCFFMFVDEETLKSLESEGHIPDENKKIGIWRIVVVKNLPYDDPRRNGRIPKLLPHRLF 150 (305)
T ss_pred CCCccccCchh--hCHHHhcCccEEEEEehhhHHHHHhcCCccccccccCceEEEEecCCCCcchhhcCcccceeccccC
Confidence 99999999987 7777889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCceeEecCHHHHHHHHHhcCCCeEEEecCCCCCcHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCC
Q 005364 547 PSARYSIWLDSKLRLQRDPLLILEYFLWRKGYEYAISNHYDRHCVWEEVAQNKKLNKYNHTVIDQQFAFYQADGLKRFDP 626 (700)
Q Consensus 547 PnyrYSIWIDgKIqL~~DPllLLE~fLwr~n~~fAIskHp~R~CVYEEAeAckrl~K~~~~~Id~Qme~Yk~eGLp~~~~ 626 (700)
|+|+|||||||||+|++||++||++|||+++++|||++||.|+||||||+||++++||+++.|++||++|+++|||++.
T Consensus 151 p~y~ySIWID~ki~L~~Dp~~lie~~l~~~~~~~Ai~~H~~R~cvyeEa~a~~~~~k~~~~~I~~Qm~~Y~~eGlp~~s- 229 (305)
T PF04765_consen 151 PNYDYSIWIDGKIQLIVDPLLLIERFLWRKNADIAISKHPERNCVYEEAEACKRLGKYDPERIDEQMEFYKQEGLPPWS- 229 (305)
T ss_pred CCCceEEEEeeeEEEecCHHHHHHHHHhcCCCcEEEeCCCCcccHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCccc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred CCCCCCCCCCCCCceEEEccCCcchhhhHHHHHHHHhcCCCCccchHHHHHHHhhhcCCCCCcccccccCccc
Q 005364 627 SDPDRLLPSNVPEGSFIVRAHTPMSNLFSCLWFNEVDRFTSRDQLSFAYTYQKLRRMNPSKMFYLNMFKVHST 699 (700)
Q Consensus 627 sdp~kl~pSdLpEgnVIVReHtp~sNlFmCLWFNEV~rFT~RDQLSFaYVlwKL~~mnp~~~~~lnMF~~Cer 699 (700)
.++.+++|+||||+||||+|+|++|+|||+|||||++||+||||||+||+||++. +|+||||+||||
T Consensus 230 -~~k~~l~s~v~E~~iIiR~H~~~~nlf~clWfnEv~rfs~RDQLSF~Yv~wk~~~-----~~~~~mf~~~~~ 296 (305)
T PF04765_consen 230 -PAKLPLPSDVPEGNIIIRKHNPMSNLFMCLWFNEVERFSPRDQLSFPYVLWKLGP-----KFKLNMFKDCER 296 (305)
T ss_pred -ccccccccCCccceEEEecCCchhHHHHHHHHHHHhcCCCcccchHHHHHHHhCC-----cccchhhhHHHH
Confidence 4566789999999999999999999999999999999999999999999999963 699999999997
No 2
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=91.10 E-value=0.26 Score=48.93 Aligned_cols=96 Identities=13% Similarity=0.156 Sum_probs=59.0
Q ss_pred CCceEEEEecccchhhhccc-CCCCCCCCcccceEEEEccCCCCcccc-cccC-----ccccccccCCCCCCEEEEEeCc
Q 005364 486 KNVCFVMFTDELTLQTLSSE-GQIPDRTGFIGLWKMVVVKNLPYDDMR-RVGK-----IPKLLPHRLFPSARYSIWLDSK 558 (700)
Q Consensus 486 knVcFicFTDe~tL~sl~~~-g~vpd~~~~vG~WRIV~VknlPy~D~R-RngR-----ipKiLpHRLFPnyrYSIWIDgK 558 (700)
..++|++++++.+...++.= ...... -...+++.+....+.... ...+ +.|++...+||+++.-||||+-
T Consensus 29 ~~~~~~il~~~is~~~~~~L~~~~~~~---~~~i~~~~i~~~~~~~~~~~~~~~~~~~y~rl~l~~ll~~~~rvlylD~D 105 (248)
T cd04194 29 RDYDFYILNDDISEENKKKLKELLKKY---NSSIEFIKIDNDDFKFFPATTDHISYATYYRLLIPDLLPDYDKVLYLDAD 105 (248)
T ss_pred CceEEEEEeCCCCHHHHHHHHHHHHhc---CCeEEEEEcCHHHHhcCCcccccccHHHHHHHHHHHHhcccCEEEEEeCC
Confidence 46899999986544332210 001110 012344555431111111 1222 3488999999999999999999
Q ss_pred eeEecCHHHHHHHHHhcCCCeEEEecCC
Q 005364 559 LRLQRDPLLILEYFLWRKGYEYAISNHY 586 (700)
Q Consensus 559 IqL~~DPllLLE~fLwr~n~~fAIskHp 586 (700)
+.+..|+..|.+.-+ ++..+|+..|.
T Consensus 106 ~lv~~di~~L~~~~~--~~~~~aa~~d~ 131 (248)
T cd04194 106 IIVLGDLSELFDIDL--GDNLLAAVRDP 131 (248)
T ss_pred EEecCCHHHHhcCCc--CCCEEEEEecc
Confidence 999999998887533 56678888764
No 3
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=87.11 E-value=2 Score=43.17 Aligned_cols=158 Identities=13% Similarity=0.135 Sum_probs=91.5
Q ss_pred CceEEEEecccchhhhcccCCCCCCCCcccceEEEEccCCCCc------ccccccCccccccccCCCCCCEEEEEeCcee
Q 005364 487 NVCFVMFTDELTLQTLSSEGQIPDRTGFIGLWKMVVVKNLPYD------DMRRVGKIPKLLPHRLFPSARYSIWLDSKLR 560 (700)
Q Consensus 487 nVcFicFTDe~tL~sl~~~g~vpd~~~~vG~WRIV~VknlPy~------D~RRngRipKiLpHRLFPnyrYSIWIDgKIq 560 (700)
.+.|++++|..+....+.-..+... .-...+++.++...+. ......-+.|++...|||+++--||+|+-+.
T Consensus 30 ~~~~~il~~~is~~~~~~L~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~y~RL~i~~llp~~~kvlYLD~D~i 107 (246)
T cd00505 30 PLRFHVLTNPLSDTFKAALDNLRKL--YNFNYELIPVDILDSVDSEHLKRPIKIVTLTKLHLPNLVPDYDKILYVDADIL 107 (246)
T ss_pred CeEEEEEEccccHHHHHHHHHHHhc--cCceEEEEeccccCcchhhhhcCccccceeHHHHHHHHhhccCeEEEEcCCee
Confidence 6889999987554332210000000 0012445555422111 2233445789999999999999999999999
Q ss_pred EecCHHHHHHHHHhcCCCeEEEecCCCCCcHHHHHHHHHHhccCChHHHHHHHHHH-HHcCCCCCCCCCCCCCCCCCCCC
Q 005364 561 LQRDPLLILEYFLWRKGYEYAISNHYDRHCVWEEVAQNKKLNKYNHTVIDQQFAFY-QADGLKRFDPSDPDRLLPSNVPE 639 (700)
Q Consensus 561 L~~DPllLLE~fLwr~n~~fAIskHp~R~CVYEEAeAckrl~K~~~~~Id~Qme~Y-k~eGLp~~~~sdp~kl~pSdLpE 639 (700)
+..|+..|.+..+ ++..+|+..-.. . .... +.| +..+++.. ...+-
T Consensus 108 v~~di~~L~~~~l--~~~~~aav~d~~----~------~~~~-----------~~~~~~~~~~~~----------~~yfN 154 (246)
T cd00505 108 VLTDIDELWDTPL--GGQELAAAPDPG----D------RREG-----------KYYRQKRSHLAG----------PDYFN 154 (246)
T ss_pred eccCHHHHhhccC--CCCeEEEccCch----h------hhcc-----------chhhcccCCCCC----------CCcee
Confidence 9999999888654 666788875421 0 0000 111 12233211 12466
Q ss_pred ceEEEccCCcc-----hhhhHHHHHHHHhcCCCCccchHHHHHHH
Q 005364 640 GSFIVRAHTPM-----SNLFSCLWFNEVDRFTSRDQLSFAYTYQK 679 (700)
Q Consensus 640 gnVIVReHtp~-----sNlFmCLWFNEV~rFT~RDQLSFaYVlwK 679 (700)
++|++=+-... .......|.+...+..--||=.++.++..
T Consensus 155 sGVmlinl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~LN~~~~~ 199 (246)
T cd00505 155 SGVFVVNLSKERRNQLLKVALEKWLQSLSSLSGGDQDLLNTFFKQ 199 (246)
T ss_pred eeeEEEechHHHHHHHHHHHHHHHHhhcccCccCCcHHHHHHHhc
Confidence 77877554422 11123445555567888999999999875
No 4
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=76.39 E-value=2.2 Score=40.94 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=36.2
Q ss_pred CccccccccCCCCCCEEEEEeCceeEecCHHHHHHHHHhcCCCeEEEecC
Q 005364 536 KIPKLLPHRLFPSARYSIWLDSKLRLQRDPLLILEYFLWRKGYEYAISNH 585 (700)
Q Consensus 536 RipKiLpHRLFPnyrYSIWIDgKIqL~~DPllLLE~fLwr~n~~fAIskH 585 (700)
-+.|++.+.+||+|+--||||+-+.+..|+..|.+..+ ++..+|+...
T Consensus 86 ~~~rl~i~~ll~~~drilyLD~D~lv~~dl~~lf~~~~--~~~~~~a~~~ 133 (250)
T PF01501_consen 86 TFARLFIPDLLPDYDRILYLDADTLVLGDLDELFDLDL--QGKYLAAVED 133 (250)
T ss_dssp GGGGGGHHHHSTTSSEEEEE-TTEEESS-SHHHHC-----TTSSEEEEE-
T ss_pred HHHHhhhHHHHhhcCeEEEEcCCeeeecChhhhhcccc--hhhhcccccc
Confidence 35789999999999999999999999999998888554 4666777666
No 5
>COG1681 FlaB Archaeal flagellins [Cell motility and secretion]
Probab=71.04 E-value=4.3 Score=41.96 Aligned_cols=28 Identities=36% Similarity=0.598 Sum_probs=24.9
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHhhcC
Q 005364 59 RRLSIGSVIFVLLLVLLATVLAYLYISG 86 (700)
Q Consensus 59 ~~~~~~~~~~~~~~~l~~~v~~~~~~s~ 86 (700)
.-.+||++|++.++||+|.|+||-.|..
T Consensus 4 G~~GIgtlIVfIAmVlVAAVaA~VlInt 31 (209)
T COG1681 4 GATGIGTLIVFIAMVLVAAVAAYVLINT 31 (209)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHhcc
Confidence 4678999999999999999999988754
No 6
>PRK08541 flagellin; Validated
Probab=65.38 E-value=6.5 Score=40.69 Aligned_cols=28 Identities=32% Similarity=0.516 Sum_probs=24.6
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHhhcC
Q 005364 59 RRLSIGSVIFVLLLVLLATVLAYLYISG 86 (700)
Q Consensus 59 ~~~~~~~~~~~~~~~l~~~v~~~~~~s~ 86 (700)
.-.+||++|+|.++|||+.|+||-.|..
T Consensus 4 G~~GIGTLIVFIAmVLVAAVAA~VLInT 31 (211)
T PRK08541 4 GAVGIGTLIVFIAMVLVAAVAAAVLINT 31 (211)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3568999999999999999999888754
No 7
>PF01917 Arch_flagellin: Archaebacterial flagellin; InterPro: IPR002774 Archaeal motility occurs by the rotation of flagella that are different to bacterial flagella, but show similarity to bacterial type IV pili. These similarities include the multiflagellin nature of the flagellar filament, N-terminal sequence similarities, as well as the presence of homologous proteins in the two systems [, ]. Also unlike bacterial flagellins but similar to type IV pilins, archaeal flagellins are initially synthesised with a short leader peptide that is cleaved by a membrane-located peptidase [, ]. The enzyme responsible for the removal of the this leader peptide is FlaK [].; GO: 0005198 structural molecule activity, 0006928 cellular component movement
Probab=54.37 E-value=12 Score=36.56 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=22.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhcC
Q 005364 61 LSIGSVIFVLLLVLLATVLAYLYISG 86 (700)
Q Consensus 61 ~~~~~~~~~~~~~l~~~v~~~~~~s~ 86 (700)
.+++++|||.++||+|.|||+-.|..
T Consensus 3 ~gi~t~IvfIA~VlVAAv~a~vli~t 28 (190)
T PF01917_consen 3 VGIGTAIVFIAFVLVAAVAAGVLINT 28 (190)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999776653
No 8
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=52.05 E-value=34 Score=34.39 Aligned_cols=22 Identities=32% Similarity=0.458 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCC
Q 005364 67 IFVLLLVLLATVLAYLYISGYS 88 (700)
Q Consensus 67 ~~~~~~~l~~~v~~~~~~s~~~ 88 (700)
+++|+|+++++++||.++++..
T Consensus 25 ~~~llll~~~G~~~~~~~~~~~ 46 (182)
T PRK08455 25 GVVVLLLLIVGVIAMLLMGSKE 46 (182)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC
Confidence 3455555666788888777655
No 9
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15
Probab=49.34 E-value=24 Score=32.54 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHhhhccccCCC
Q 005364 211 NELKMYEAEYEASLKNAGLSGNL 233 (700)
Q Consensus 211 ~elk~yeaeyeasl~~~g~~~~~ 233 (700)
-||.++|++|+|-|.-+.+-.++
T Consensus 28 ~EL~~~Eq~~q~Wl~sI~ekd~n 50 (92)
T PF15243_consen 28 TELQQQEQQHQAWLQSIAEKDNN 50 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHhccC
Confidence 58999999999988766655333
No 10
>PF04415 DUF515: Protein of unknown function (DUF515) ; InterPro: IPR007509 This is a family of hypothetical archaeal proteins.
Probab=47.54 E-value=18 Score=40.99 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=21.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHH
Q 005364 592 WEEVAQNKKLNKYNHTVIDQQFAFY 616 (700)
Q Consensus 592 YEEAeAckrl~K~~~~~Id~Qme~Y 616 (700)
-+|+......+|++.+.|.+|+..|
T Consensus 342 l~~iL~A~a~gkl~~~~v~~~l~~Y 366 (416)
T PF04415_consen 342 LPEILKAIAAGKLDYSQVKEQLGNY 366 (416)
T ss_pred HHHHHHHHHhCCcCHHHHHHHHHHh
Confidence 4677777888889989999999999
No 11
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=46.02 E-value=29 Score=36.32 Aligned_cols=96 Identities=20% Similarity=0.220 Sum_probs=60.0
Q ss_pred CCceEEEEecccchhhhcccCCCCCCCCcccceEEEEccCCCCc-----cc---------------cccc-----Ccccc
Q 005364 486 KNVCFVMFTDELTLQTLSSEGQIPDRTGFIGLWKMVVVKNLPYD-----DM---------------RRVG-----KIPKL 540 (700)
Q Consensus 486 knVcFicFTDe~tL~sl~~~g~vpd~~~~vG~WRIV~VknlPy~-----D~---------------RRng-----RipKi 540 (700)
.+++|..|||..+...++.--... ...--..+++.+++..+. .+ .+.. -+.++
T Consensus 28 ~~~~fhvvtd~~s~~~~~~~~~~~--~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl 105 (257)
T cd06429 28 SNLVFHIVTDNQNYGAMRSWFDLN--PLKIATVKVLNFDDFKLLGKVKVDSLMQLESEADTSNLKQRKPEYISLLNFARF 105 (257)
T ss_pred CceEEEEecCccCHHHHHHHHHhc--CCCCceEEEEEeCcHHhhcccccchhhhhhccccccccccCCccccCHHHHHHH
Confidence 468999999988766554410000 000124555555432111 11 1111 14566
Q ss_pred ccccCCCCCCEEEEEeCceeEecCHHHHHHHHHhcCCCeEEEecC
Q 005364 541 LPHRLFPSARYSIWLDSKLRLQRDPLLILEYFLWRKGYEYAISNH 585 (700)
Q Consensus 541 LpHRLFPnyrYSIWIDgKIqL~~DPllLLE~fLwr~n~~fAIskH 585 (700)
+.-.+||+++--||+|+-+.+.+|...|.+.=+ ++..+|+...
T Consensus 106 ~ip~llp~~~kvlYLD~Dviv~~dl~eL~~~dl--~~~~~aav~d 148 (257)
T cd06429 106 YLPELFPKLEKVIYLDDDVVVQKDLTELWNTDL--GGGVAGAVET 148 (257)
T ss_pred HHHHHhhhhCeEEEEeCCEEEeCCHHHHhhCCC--CCCEEEEEhh
Confidence 677889999999999999999999998887643 5667777665
No 12
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=43.06 E-value=76 Score=36.55 Aligned_cols=20 Identities=15% Similarity=0.370 Sum_probs=14.2
Q ss_pred CCCCCCCCCCcchhhhhccc
Q 005364 275 DSGHDKGDHSDVAKIQSQYQ 294 (700)
Q Consensus 275 d~g~~~~~~~~~~~~~~~~~ 294 (700)
|.|.+-++..--|.|.++++
T Consensus 98 ddG~~TDnE~GFAdSDDEdD 117 (458)
T PF10446_consen 98 DDGNETDNEAGFADSDDEDD 117 (458)
T ss_pred ccCccCcccccccccccccc
Confidence 56777777777777766665
No 13
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=39.50 E-value=26 Score=36.68 Aligned_cols=40 Identities=30% Similarity=0.169 Sum_probs=27.3
Q ss_pred hhcccCccccccccccccccccccccc---eEeeccCCCccCC
Q 005364 99 IISHSAVDDELKNDIDFLTNVTRTNTL---KVVGFGKGSISHG 138 (700)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---k~~~fg~g~~~~g 138 (700)
.+.+...+.|+-...||++.+|..=+- +|+.=-+|++.+|
T Consensus 226 ~~~~g~~g~e~iP~~dfw~~lP~l~kd~~~~v~~~~~g~~sRG 268 (268)
T PF09451_consen 226 YNRYGARGFELIPHFDFWRSLPYLIKDGVRFVVGTVQGSGSRG 268 (268)
T ss_pred eccCCCCCceecccHhHHHhchHHHHHHHHHhhccccCCCCCC
Confidence 455555556666666999999876543 6666678887766
No 14
>PF09307 MHC2-interact: CLIP, MHC2 interacting; InterPro: IPR015386 This domain is found in MHC class II-associated invariant chain (Ii), and in class II invariant chain-associated peptide (CLIP), and is required for association with class II major histocompatibility complex (MHC II) in the MHC II processing pathway []. Ii plays a critical role in the assembly of the MHC, as well as in MHC II antigen processing by stabilising peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to compartments where peptide loading of class II takes place []. In antigen-presenting cells (APCs), loading of MHC II molecules with peptides is regulated by Ii, which blocks MHC II antigen-binding sites in pre-endosomal compartments []. Several factors modulate the surface expression of MHC II molecules via post-Golgi mechanisms, including CLIP. The Invariant chain contains a single transmembrane domain. Ii first assembles into a trimer and then associates with three class II alpha/beta MHC heterodimers. Although the membrane-proximal region of the Ii luminal domain is structurally disordered, the C-terminal segment of the luminal domain is largely alpha-helical and contains a major interaction site for the Ii trimer []. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0042289 MHC class II protein binding, 0006886 intracellular protein transport, 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane; PDB: 1A6A_C 3QXD_F 3QXA_F 3PDO_C 1MUJ_C 3PGD_F 3PGC_F.
Probab=37.60 E-value=11 Score=35.93 Aligned_cols=39 Identities=10% Similarity=0.220 Sum_probs=0.0
Q ss_pred ccCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHhhcCCC
Q 005364 49 RRSARSDKNGRRLSIGSVIFVLLLVLLATVLAYLYISGYS 88 (700)
Q Consensus 49 rr~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~s~~~ 88 (700)
+++.+.+++ |.+.|+++-+++||+|.-=++.-||+-.+.
T Consensus 21 ~~~~~~s~s-ra~~vagltvLa~LLiAGQa~TaYfv~~Qk 59 (114)
T PF09307_consen 21 GGPQRGSCS-RALKVAGLTVLACLLIAGQAVTAYFVFQQK 59 (114)
T ss_dssp ----------------------------------------
T ss_pred CCCCCCCcc-chhHHHHHHHHHHHHHHhHHHHHHHHHHhH
Confidence 455555555 778888877666665554444445554444
No 15
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=34.10 E-value=33 Score=37.03 Aligned_cols=115 Identities=16% Similarity=0.192 Sum_probs=64.2
Q ss_pred CcCCHhhHhhhccC-cEEEEeeeeCCCccccCCCCCcc--cccCCCCceEEEEecccchhhhcccCCCCCCC-CcccceE
Q 005364 444 FDLAEDDANYNSRC-HIAVISCIFGNSDRLRIPVGKTV--TRLSRKNVCFVMFTDELTLQTLSSEGQIPDRT-GFIGLWK 519 (700)
Q Consensus 444 Fdi~e~D~~~M~~C-KIVVYTAIFGnYD~L~qP~~~~i--s~~s~knVcFicFTDe~tL~sl~~~g~vpd~~-~~vG~WR 519 (700)
|+..=-+..|-++. +|.+.---+|.|-...+.--.+. .=+-.-.|-|+.|||...+ +|.-. +---.=+
T Consensus 20 f~~~~l~~~y~~~n~tIgl~vfatGkY~~f~~~F~~SAEk~Fm~g~~v~YyVFTD~~~~--------~p~v~lg~~r~~~ 91 (271)
T cd02515 20 FNPDVLDEYYRKQNITIGLTVFAVGKYTEFLERFLESAEKHFMVGYRVIYYIFTDKPAA--------VPEVELGPGRRLT 91 (271)
T ss_pred CCHHHHHHHHHhcCCEEEEEEEEeccHHHHHHHHHHHHHHhccCCCeeEEEEEeCCccc--------CcccccCCCceeE
Confidence 55444455555433 35555555677765433211000 0022356899999997653 22100 0001234
Q ss_pred EEEc-cCC--CCcccccccCccccccccCCCCCCEEEEEeCceeEecCHH
Q 005364 520 MVVV-KNL--PYDDMRRVGKIPKLLPHRLFPSARYSIWLDSKLRLQRDPL 566 (700)
Q Consensus 520 IV~V-knl--Py~D~RRngRipKiLpHRLFPnyrYSIWIDgKIqL~~DPl 566 (700)
++.| ... |+..++|.--+-+...-+++-+++|-..+|+++.++...-
T Consensus 92 V~~v~~~~~W~~~sl~Rm~~~~~~~~~~~~~e~DYlF~~dvd~~F~~~ig 141 (271)
T cd02515 92 VLKIAEESRWQDISMRRMKTLADHIADRIGHEVDYLFCMDVDMVFQGPFG 141 (271)
T ss_pred EEEeccccCCcHHHHHHHHHHHHHHHHhhcccCCEEEEeeCCceEeecCC
Confidence 4444 223 5566776655555555567899999999999999996544
No 16
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=34.04 E-value=29 Score=35.87 Aligned_cols=43 Identities=26% Similarity=0.356 Sum_probs=0.0
Q ss_pred CCCCceEEEccCCcchhhhHHHHHHHHhcCC------CCccchHHHHHHH
Q 005364 636 NVPEGSFIVRAHTPMSNLFSCLWFNEVDRFT------SRDQLSFAYTYQK 679 (700)
Q Consensus 636 dLpEgnVIVReHtp~sNlFmCLWFNEV~rFT------~RDQLSFaYVlwK 679 (700)
+|=-|.||||. ++-+..|+..|+...-+.. ..||=+|.|.+..
T Consensus 144 gLNtGsFliRn-s~ws~~fLd~w~~~~~~~~~~~~~~~~EQsAl~~ll~~ 192 (239)
T PF05637_consen 144 GLNTGSFLIRN-SPWSRDFLDAWADPLYRNYDWDQLEFDEQSALEHLLQW 192 (239)
T ss_dssp --------------------------------------------------
T ss_pred ccccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence 45566788888 4545568899998765433 3569899988754
No 17
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=32.76 E-value=15 Score=32.01 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=0.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCC
Q 005364 63 IGSVIFVLLLVLLATVLAYLYISGYSN 89 (700)
Q Consensus 63 ~~~~~~~~~~~l~~~v~~~~~~s~~~~ 89 (700)
+|+|+.+||+|||+..++|++-..|.-
T Consensus 16 aG~Vvgll~ailLIlf~iyR~rkkdEG 42 (64)
T PF01034_consen 16 AGGVVGLLFAILLILFLIYRMRKKDEG 42 (64)
T ss_dssp ---------------------S-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666778888888888998877763
No 18
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=32.70 E-value=36 Score=35.22 Aligned_cols=45 Identities=24% Similarity=0.381 Sum_probs=36.6
Q ss_pred ccccccCCC-CCCEEEEEeCceeEecCHHHHHHHHHhcCCCeEEEecC
Q 005364 539 KLLPHRLFP-SARYSIWLDSKLRLQRDPLLILEYFLWRKGYEYAISNH 585 (700)
Q Consensus 539 KiLpHRLFP-nyrYSIWIDgKIqL~~DPllLLE~fLwr~n~~fAIskH 585 (700)
.+++..||| +++--||+|+-+.++.|...|.+.=+ ++.-+|+..|
T Consensus 85 rL~~~~lLP~~vdkvLYLD~Dilv~~dL~eL~~~dl--~~~~~Aav~d 130 (248)
T cd06432 85 ILFLDVLFPLNVDKVIFVDADQIVRTDLKELMDMDL--KGAPYGYTPF 130 (248)
T ss_pred HHHHHHhhhhccCEEEEEcCCceecccHHHHHhcCc--CCCeEEEeec
Confidence 366777899 69999999999999999888877543 5777888776
No 19
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=31.93 E-value=46 Score=35.19 Aligned_cols=99 Identities=17% Similarity=0.151 Sum_probs=59.4
Q ss_pred CCCceEEEEecccchhhhcccCCCCCCCCcccceEEEEccCC--CC---cccccccC--ccccccccCCC-CCCEEEEEe
Q 005364 485 RKNVCFVMFTDELTLQTLSSEGQIPDRTGFIGLWKMVVVKNL--PY---DDMRRVGK--IPKLLPHRLFP-SARYSIWLD 556 (700)
Q Consensus 485 ~knVcFicFTDe~tL~sl~~~g~vpd~~~~vG~WRIV~Vknl--Py---~D~RRngR--ipKiLpHRLFP-nyrYSIWID 556 (700)
...++|..|+|+.+.+.++.-..... ..--.+.++.+..+ ++ ......+. +.+++.+.+|| +++--||||
T Consensus 28 ~~~~~fhii~d~~s~~~~~~l~~~~~--~~~~~i~f~~i~~~~~~~~~~~~~~~s~~y~y~RL~ip~llp~~~dkvLYLD 105 (280)
T cd06431 28 RNPLHFHLITDEIARRILATLFQTWM--VPAVEVSFYNAEELKSRVSWIPNKHYSGIYGLMKLVLTEALPSDLEKVIVLD 105 (280)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHhcc--ccCcEEEEEEhHHhhhhhccCcccchhhHHHHHHHHHHHhchhhcCEEEEEc
Confidence 35699999999776544332100000 00123555555321 11 11111221 14888999999 799999999
Q ss_pred CceeEecCHHHHHHHHH-hcCCCeEEEecC
Q 005364 557 SKLRLQRDPLLILEYFL-WRKGYEYAISNH 585 (700)
Q Consensus 557 gKIqL~~DPllLLE~fL-wr~n~~fAIskH 585 (700)
+=+.+.+|+..|.+.|. ..++.-+|+..+
T Consensus 106 ~Diiv~~di~eL~~~~~~~~~~~~~a~v~~ 135 (280)
T cd06431 106 TDITFATDIAELWKIFHKFTGQQVLGLVEN 135 (280)
T ss_pred CCEEEcCCHHHHHHHhhhcCCCcEEEEecc
Confidence 99999999999888741 234556677654
No 20
>PRK05529 cell division protein FtsQ; Provisional
Probab=30.86 E-value=35 Score=35.65 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=11.7
Q ss_pred cccccCCCCCCCCCccchhHHH
Q 005364 46 ARARRSARSDKNGRRLSIGSVI 67 (700)
Q Consensus 46 ~~~rr~~~~~~~~~~~~~~~~~ 67 (700)
.|.||..|+.|+ |+..+.+++
T Consensus 22 ~~~~~~~~~~~~-r~~~~~~~~ 42 (255)
T PRK05529 22 ERVRRFTTRIRR-RFILLACAV 42 (255)
T ss_pred hhhhchhhhccc-hhhhHHHHH
Confidence 345666666666 555555443
No 21
>PF08391 Ly49: Ly49-like protein, N-terminal region; InterPro: IPR013600 The sequences making up this entry are annotated as, or are similar to, Ly49 receptors (e.g. P20937 from SWISSPROT). These are type II transmembrane receptors expressed by mouse natural killer (NK) cells. They are classified as being activating (e.g.Ly49D and H) or inhibitory (e.g. Ly49A and G), depending on their effect on NK cell function []. They are members of the C-type lectin receptor superfamily [], and in fact in many family members this region is found immediately N-terminal to a lectin C-type domain (IPR001304 from INTERPRO). ; PDB: 1QO3_D 3C8J_D 1P4L_D 3C8K_D 3G8K_B 1JA3_B 3CAD_A 3G8L_A.
Probab=30.63 E-value=17 Score=34.85 Aligned_cols=18 Identities=39% Similarity=0.473 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 005364 63 IGSVIFVLLLVLLATVLA 80 (700)
Q Consensus 63 ~~~~~~~~~~~l~~~v~~ 80 (700)
|+.++.+|||+|||||.+
T Consensus 7 iav~LGILCllLLvtv~v 24 (119)
T PF08391_consen 7 IAVALGILCLLLLVTVAV 24 (119)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455566888888888766
No 22
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=29.92 E-value=80 Score=34.44 Aligned_cols=34 Identities=18% Similarity=0.380 Sum_probs=30.5
Q ss_pred ccccccCCCCCCEEEEEeCceeEecCHHHHHHHH
Q 005364 539 KLLPHRLFPSARYSIWLDSKLRLQRDPLLILEYF 572 (700)
Q Consensus 539 KiLpHRLFPnyrYSIWIDgKIqL~~DPllLLE~f 572 (700)
.++...+||+.+--||+|+-+.+.+|+..|.+.|
T Consensus 87 RL~ip~lLp~~dkvLYLD~Dii~~~dI~eL~~~~ 120 (304)
T cd06430 87 RLFLPSLLPDVDSLLYVDTDILFLRPVEEIWSFL 120 (304)
T ss_pred HHHHHHHhhhhceEEEeccceeecCCHHHHHHHH
Confidence 3888899999999999999999999999888864
No 23
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=29.87 E-value=53 Score=32.05 Aligned_cols=86 Identities=19% Similarity=0.198 Sum_probs=60.5
Q ss_pred EEEEeCceeEecCHHHHHHHHHhcCCCeEEEecCCCCCcHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCCCCCCC
Q 005364 552 SIWLDSKLRLQRDPLLILEYFLWRKGYEYAISNHYDRHCVWEEVAQNKKLNKYNHTVIDQQFAFYQADGLKRFDPSDPDR 631 (700)
Q Consensus 552 SIWIDgKIqL~~DPllLLE~fLwr~n~~fAIskHp~R~CVYEEAeAckrl~K~~~~~Id~Qme~Yk~eGLp~~~~sdp~k 631 (700)
-+++|+=+.+..||+.+++. .+.++.++.-........ .
T Consensus 69 vl~~D~Dvv~~~dp~~~~~~----~~~Di~~~~d~~~~~~~~------------------------~------------- 107 (212)
T PF03407_consen 69 VLFSDADVVWLRDPLPYFEN----PDADILFSSDGWDGTNSD------------------------R------------- 107 (212)
T ss_pred eEEecCCEEEecCcHHhhcc----CCCceEEecCCCcccchh------------------------h-------------
Confidence 56899999999999988822 456676665211111000 0
Q ss_pred CCCCCCCCceEEEccCCcchhhhHHHHHHHHhcCCC-CccchHHHHHHHh
Q 005364 632 LLPSNVPEGSFIVRAHTPMSNLFSCLWFNEVDRFTS-RDQLSFAYTYQKL 680 (700)
Q Consensus 632 l~pSdLpEgnVIVReHtp~sNlFmCLWFNEV~rFT~-RDQLSFaYVlwKL 680 (700)
...++-+++++=+.|+.+..|+..|.......+. .||-.|..++...
T Consensus 108 --~~~~~n~G~~~~r~t~~~~~~~~~w~~~~~~~~~~~DQ~~~n~~l~~~ 155 (212)
T PF03407_consen 108 --NGNLVNTGFYYFRPTPRTIAFLEDWLERMAESPGCWDQQAFNELLREQ 155 (212)
T ss_pred --cCCccccceEEEecCHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHhc
Confidence 0012345777777799999999999999999955 7999999999865
No 24
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=28.19 E-value=36 Score=35.50 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=9.5
Q ss_pred ccccccchhhHHHHHH
Q 005364 203 GLYNEAGRNELKMYEA 218 (700)
Q Consensus 203 glyne~gr~elk~yea 218 (700)
.-|..+--+=.+|-.|
T Consensus 143 ~~y~~~S~DW~Em~~A 158 (217)
T PF07423_consen 143 MTYDSGSVDWNEMLKA 158 (217)
T ss_pred ccccCCCcCHHHHHHH
Confidence 3466666665556665
No 25
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=26.94 E-value=63 Score=34.75 Aligned_cols=47 Identities=21% Similarity=0.462 Sum_probs=37.0
Q ss_pred ccccccCCCCCCEEEEEeCceeEecCHHHHHHHHHhcCCCeEEEecCCCC
Q 005364 539 KLLPHRLFPSARYSIWLDSKLRLQRDPLLILEYFLWRKGYEYAISNHYDR 588 (700)
Q Consensus 539 KiLpHRLFPnyrYSIWIDgKIqL~~DPllLLE~fLwr~n~~fAIskHp~R 588 (700)
-+|.|-|=|...+.+|+|+-|. .-|-.||+.|+ ..+.+|.+++=+.|
T Consensus 133 ~LL~~aL~p~~swVlWlDaDIv--~~P~~lI~dli-~~~kdIivPn~~~~ 179 (269)
T PF03452_consen 133 FLLSSALGPWHSWVLWLDADIV--ETPPTLIQDLI-AHDKDIIVPNCWRR 179 (269)
T ss_pred HHHHhhcCCcccEEEEEecCcc--cCChHHHHHHH-hCCCCEEccceeec
Confidence 4677788889999999999888 67888999985 66778877764433
No 26
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=26.62 E-value=23 Score=28.20 Aligned_cols=26 Identities=46% Similarity=0.803 Sum_probs=11.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhcCC
Q 005364 60 RLSIGSVIFVLLLVLLATVLAYLYISGY 87 (700)
Q Consensus 60 ~~~~~~~~~~~~~~l~~~v~~~~~~s~~ 87 (700)
+.++.+++++++++|++ +++ -+++.+
T Consensus 16 k~a~~gl~il~~~vl~a-i~~-p~~~p~ 41 (56)
T PF12911_consen 16 KLAVIGLIILLILVLLA-IFA-PFISPY 41 (56)
T ss_pred chHHHHHHHHHHHHHHH-HHH-HHcCCC
Confidence 44555554444443333 333 445555
No 27
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=26.58 E-value=32 Score=29.70 Aligned_cols=43 Identities=19% Similarity=0.401 Sum_probs=33.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccchhhhcc
Q 005364 60 RLSIGSVIFVLLLVLLATVLAYLYISGYSNHNDDDQDKEIISH 102 (700)
Q Consensus 60 ~~~~~~~~~~~~~~l~~~v~~~~~~s~~~~~~~~~~~~~~~~~ 102 (700)
...+.-+|++++++.+.+.|+|.-|....-|++-+|..++.+.
T Consensus 6 ~~~mtriVLLISfiIlfgRl~Y~~I~a~~hHq~k~~a~~~~~~ 48 (59)
T PF11119_consen 6 NSRMTRIVLLISFIILFGRLIYSAIGAWVHHQDKKQAQQIEQS 48 (59)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccccccc
Confidence 3456778888999999999999999888888877666655543
No 28
>PHA02849 putative transmembrane protein; Provisional
Probab=26.42 E-value=70 Score=29.16 Aligned_cols=24 Identities=29% Similarity=0.632 Sum_probs=19.2
Q ss_pred CccchhHHHHHHHHHHHHHHHHHH
Q 005364 59 RRLSIGSVIFVLLLVLLATVLAYL 82 (700)
Q Consensus 59 ~~~~~~~~~~~~~~~l~~~v~~~~ 82 (700)
...++|++.+++.+|++++.++|.
T Consensus 10 ~~f~~g~v~vi~v~v~vI~i~~fl 33 (82)
T PHA02849 10 IEFDAGAVTVILVFVLVISFLAFM 33 (82)
T ss_pred cccccchHHHHHHHHHHHHHHHHH
Confidence 567899998888888888777754
No 29
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=25.75 E-value=81 Score=27.62 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHH-HHhhcCCC
Q 005364 66 VIFVLLLVLLATVLA-YLYISGYS 88 (700)
Q Consensus 66 ~~~~~~~~l~~~v~~-~~~~s~~~ 88 (700)
||-+||++|++.|-+ =.|--|+.
T Consensus 7 vialLC~aLva~vQ~APQYa~Gee 30 (65)
T PF10731_consen 7 VIALLCVALVAIVQSAPQYAPGEE 30 (65)
T ss_pred HHHHHHHHHHHHHhcCcccCCCCC
Confidence 566788888886554 56777766
No 30
>PLN02718 Probable galacturonosyltransferase
Probab=25.50 E-value=1.5e+02 Score=35.37 Aligned_cols=95 Identities=17% Similarity=0.269 Sum_probs=59.2
Q ss_pred CCceEEEEecccchhhhcccCCC-CCCCCcccceEEEEccCC---C--Ccc-----cccccC------ccccccccCCCC
Q 005364 486 KNVCFVMFTDELTLQTLSSEGQI-PDRTGFIGLWKMVVVKNL---P--YDD-----MRRVGK------IPKLLPHRLFPS 548 (700)
Q Consensus 486 knVcFicFTDe~tL~sl~~~g~v-pd~~~~vG~WRIV~Vknl---P--y~D-----~RRngR------ipKiLpHRLFPn 548 (700)
..+.|..|||..+...++.--.+ +. .-..+.|+.|++. | |.. +.++.+ +.+++.-.+||+
T Consensus 341 ~~ivFHVvTD~is~~~mk~wf~l~~~---~~a~I~V~~Iddf~~lp~~~~~~lk~l~s~~~~~~S~~~y~Rl~ipellp~ 417 (603)
T PLN02718 341 EKIVFHVVTDSLNYPAISMWFLLNPP---GKATIQILNIDDMNVLPADYNSLLMKQNSHDPRYISALNHARFYLPDIFPG 417 (603)
T ss_pred CcEEEEEEeCCCCHHHHHHHHHhCCC---CCcEEEEEecchhccccccchhhhhhccccccccccHHHHHHHHHHHHhcc
Confidence 35999999998887665521001 11 0135666666532 1 110 011111 235566678999
Q ss_pred CCEEEEEeCceeEecCHHHHHHHHHhcCCCeEEEecC
Q 005364 549 ARYSIWLDSKLRLQRDPLLILEYFLWRKGYEYAISNH 585 (700)
Q Consensus 549 yrYSIWIDgKIqL~~DPllLLE~fLwr~n~~fAIskH 585 (700)
++--||+|+-+.+..|...|.+.-+ ++.-+|+...
T Consensus 418 l~KvLYLD~DvVV~~DL~eL~~iDl--~~~v~aaVed 452 (603)
T PLN02718 418 LNKIVLFDHDVVVQRDLSRLWSLDM--KGKVVGAVET 452 (603)
T ss_pred cCEEEEEECCEEecCCHHHHhcCCC--CCcEEEEecc
Confidence 9999999999999999988877533 5666777643
No 31
>COG4726 PilX Tfp pilus assembly protein PilX [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.27 E-value=51 Score=34.19 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=13.5
Q ss_pred cCCCCCCCCCccchhHHHHHHHHHHHHHHHH
Q 005364 50 RSARSDKNGRRLSIGSVIFVLLLVLLATVLA 80 (700)
Q Consensus 50 r~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~ 80 (700)
|..|++|+ .++||||.++||+|.|+
T Consensus 7 r~~r~qRG------~~LivvL~~LvvltLl~ 31 (196)
T COG4726 7 RGSRRQRG------FALIVVLMVLVVLTLLG 31 (196)
T ss_pred CCccccCc------eEeHHHHHHHHHHHHHH
Confidence 44455555 34555666655555554
No 32
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=24.41 E-value=24 Score=33.97 Aligned_cols=30 Identities=30% Similarity=0.381 Sum_probs=2.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhcCCCC
Q 005364 60 RLSIGSVIFVLLLVLLATVLAYLYISGYSN 89 (700)
Q Consensus 60 ~~~~~~~~~~~~~~l~~~v~~~~~~s~~~~ 89 (700)
-.+||.++|||.++||.+..-|++=||+-.
T Consensus 26 AaGIGiL~VILgiLLliGCWYckRRSGYk~ 55 (118)
T PF14991_consen 26 AAGIGILIVILGILLLIGCWYCKRRSGYKT 55 (118)
T ss_dssp --SSS-------------------------
T ss_pred hccceeHHHHHHHHHHHhheeeeecchhhh
Confidence 367899999999999999998999999874
No 33
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=24.16 E-value=81 Score=29.42 Aligned_cols=29 Identities=14% Similarity=0.261 Sum_probs=16.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhcCCC
Q 005364 60 RLSIGSVIFVLLLVLLATVLAYLYISGYS 88 (700)
Q Consensus 60 ~~~~~~~~~~~~~~l~~~v~~~~~~s~~~ 88 (700)
.+.+.++++++.++++++.++|.+.+..+
T Consensus 5 ~~~~~~~v~~vv~~~~~~w~~~~~~~~~~ 33 (112)
T PF14155_consen 5 KLVIAGAVLVVVAGAVVAWFGYSQFGSPP 33 (112)
T ss_pred eeEehHHHHHHHHHHHHhHhhhhhccCCC
Confidence 34444444555555666667777665554
No 34
>PLN02742 Probable galacturonosyltransferase
Probab=23.30 E-value=87 Score=36.77 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=32.6
Q ss_pred cccCCCCCCEEEEEeCceeEecCHHHHHHHHHhcCCCeEEEec
Q 005364 542 PHRLFPSARYSIWLDSKLRLQRDPLLILEYFLWRKGYEYAISN 584 (700)
Q Consensus 542 pHRLFPnyrYSIWIDgKIqL~~DPllLLE~fLwr~n~~fAIsk 584 (700)
.-.+||+.+--||+|+-+.+..|...|.+.=| ++.-+|+..
T Consensus 346 lP~llp~l~KvlYLD~DvVV~~DL~eL~~~DL--~~~viaAVe 386 (534)
T PLN02742 346 IPEIYPALEKVVFLDDDVVVQKDLTPLFSIDL--HGNVNGAVE 386 (534)
T ss_pred HHHHhhccCeEEEEeCCEEecCChHHHhcCCC--CCCEEEEeC
Confidence 33689999999999999999999988876533 466677664
No 35
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=22.78 E-value=85 Score=27.49 Aligned_cols=19 Identities=37% Similarity=0.578 Sum_probs=10.1
Q ss_pred CccchhHHHHHHHHHHHHH
Q 005364 59 RRLSIGSVIFVLLLVLLAT 77 (700)
Q Consensus 59 ~~~~~~~~~~~~~~~l~~~ 77 (700)
|+...|.+++++.++++++
T Consensus 40 r~~~~~~~~~v~gl~llv~ 58 (82)
T PF11239_consen 40 RRRVLGVLLVVVGLALLVA 58 (82)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3445566666665544443
No 36
>PF07790 DUF1628: Protein of unknown function (DUF1628); InterPro: IPR012859 The sequences making up this family are derived from hypothetical proteins of unknown function expressed by various archaeal species. The region in question is approximately 160 residues long.
Probab=22.29 E-value=1.1e+02 Score=26.38 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=21.8
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHhhcC
Q 005364 59 RRLSIGSVIFVLLLVLLATVLAYLYISG 86 (700)
Q Consensus 59 ~~~~~~~~~~~~~~~l~~~v~~~~~~s~ 86 (700)
=++-||.+++++..|+++++++...++-
T Consensus 3 vS~viGviLliaitVilaavv~~~~~~~ 30 (80)
T PF07790_consen 3 VSPVIGVILLIAITVILAAVVGAFVFGL 30 (80)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5677899988888888888888655554
No 37
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=21.60 E-value=73 Score=33.65 Aligned_cols=69 Identities=22% Similarity=0.425 Sum_probs=45.5
Q ss_pred cccCCCCCCEEEEEeCceeEecCHHHHHHHHHhcCCCeEEEecCCCCCcHHHHHHHHHHhccCChHHHH--HHHHHH
Q 005364 542 PHRLFPSARYSIWLDSKLRLQRDPLLILEYFLWRKGYEYAISNHYDRHCVWEEVAQNKKLNKYNHTVID--QQFAFY 616 (700)
Q Consensus 542 pHRLFPnyrYSIWIDgKIqL~~DPllLLE~fLwr~n~~fAIskHp~R~CVYEEAeAckrl~K~~~~~Id--~Qme~Y 616 (700)
.+.++|++++-++|||-|-++ +|...||.|+ ..+.++-++.-+ .- =|+.|..-+-|=++..++ .+..-|
T Consensus 35 va~~L~~~~~vlflDaDigVv-Np~~~iEefi-d~~~Di~fydR~---~n-~Ei~agsYlvkNT~~~~~fl~~~a~~ 105 (222)
T PF03314_consen 35 VAKILPEYDWVLFLDADIGVV-NPNRRIEEFI-DEGYDIIFYDRF---FN-WEIAAGSYLVKNTEYSRDFLKEWADY 105 (222)
T ss_pred HHHHhccCCEEEEEcCCceee-cCcccHHHhc-CCCCcEEEEecc---cc-hhhhhccceeeCCHHHHHHHHHHhhh
Confidence 356779999999999999776 8999999987 777788776543 22 344554334333443332 344444
No 38
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=21.53 E-value=1.9e+02 Score=23.02 Aligned_cols=25 Identities=8% Similarity=0.347 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCC
Q 005364 68 FVLLLVLLATVLAYLYISGYSNHND 92 (700)
Q Consensus 68 ~~~~~~l~~~v~~~~~~s~~~~~~~ 92 (700)
+-.++.+.|.+|.+-++|.|+..|.
T Consensus 8 Vy~vV~ffv~LFifGflsnDp~RnP 32 (36)
T PF02532_consen 8 VYTVVIFFVSLFIFGFLSNDPGRNP 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTSSS
T ss_pred ehhhHHHHHHHHhccccCCCCCCCC
Confidence 3455566778888999999996443
No 39
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=21.28 E-value=2.1e+02 Score=26.28 Aligned_cols=31 Identities=19% Similarity=0.134 Sum_probs=18.3
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHhhcCCC
Q 005364 58 GRRLSIGSVIFVLLLVLLATVLAYLYISGYS 88 (700)
Q Consensus 58 ~~~~~~~~~~~~~~~~l~~~v~~~~~~s~~~ 88 (700)
+.++.-=+.+++.+++|-+.-++.+||++..
T Consensus 27 ~~sp~W~~p~m~~lmllGL~WiVvyYi~~~~ 57 (87)
T PF06781_consen 27 KPSPRWYAPLMLGLMLLGLLWIVVYYISGGQ 57 (87)
T ss_pred CCCCccHHHHHHHHHHHHHHHHhhhhcccCC
Confidence 3455555555555555555555677787764
No 40
>PF12216 m04gp34like: Immune evasion protein; InterPro: IPR022022 The proteins in this family are related to the m04 encoded protein gp34 of pathogenic microorganisms such as Murid herpesvirus 1. m06 and m152 genes are expressed earlier in the intracellular replication phases of these microorganism' life cycles. They function to inhibit MHC-1 loading and export. gp34 is theorized to prevent immune reactions from NK cells which would ordinarily recognise and attack cells lacking MHC.
Probab=20.69 E-value=48 Score=35.66 Aligned_cols=24 Identities=33% Similarity=0.793 Sum_probs=12.4
Q ss_pred ccchhHHHHHHHHHHHHH--HHHHHh
Q 005364 60 RLSIGSVIFVLLLVLLAT--VLAYLY 83 (700)
Q Consensus 60 ~~~~~~~~~~~~~~l~~~--v~~~~~ 83 (700)
+..++|++|+++++++|+ ||+|.|
T Consensus 230 ~~~~~ai~v~vv~i~va~~~vL~y~Y 255 (272)
T PF12216_consen 230 SNNVTAIVVIVVLIFVAAVIVLAYLY 255 (272)
T ss_pred ccceEEEEeeehhHHHHHHHHhhhhc
Confidence 334444444444444444 777665
Done!