Query 005364
Match_columns 700
No_of_seqs 122 out of 142
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 23:15:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005364.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005364hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vmt_A Monofunctional glycosyl 67.4 4 0.00014 41.9 4.0 27 59-85 34-60 (263)
2 3tzt_A Glycosyl transferase fa 44.9 7 0.00024 38.9 1.4 48 537-586 88-136 (276)
3 1g9r_A Glycosyl transferase; a 40.7 10 0.00036 37.9 1.9 47 537-585 84-130 (311)
4 2a9h_A Voltage-gated potassium 32.4 25 0.00086 32.7 2.9 18 70-87 59-76 (155)
5 3j1r_A Archaeal adhesion filam 31.8 49 0.0017 23.5 3.5 15 71-85 12-26 (26)
6 4g1u_A Hemin transport system 31.6 26 0.00088 37.1 3.1 9 18-26 7-15 (357)
7 1ypf_A GMP reductase; GUAC, pu 31.1 12 0.0004 38.4 0.4 18 14-31 1-18 (336)
8 2jwa_A Receptor tyrosine-prote 30.2 43 0.0015 26.2 3.3 28 59-86 10-37 (44)
9 3vis_A Esterase; alpha/beta-hy 29.0 12 0.0004 36.1 0.0 12 17-28 1-12 (306)
10 2iai_A Putative transcriptiona 28.9 34 0.0011 31.2 3.0 11 14-24 2-12 (230)
11 2ks1_B Epidermal growth factor 27.3 51 0.0018 25.6 3.3 29 60-88 10-39 (44)
12 2qrj_A Saccharopine dehydrogen 26.5 22 0.00077 38.2 1.6 41 424-469 264-306 (394)
13 2kse_A Sensor protein QSEC; me 25.6 48 0.0017 28.6 3.3 31 59-89 12-42 (186)
14 1iij_A ERBB-2 receptor protein 24.3 11 0.00037 28.4 -0.9 26 59-84 6-31 (35)
15 3un6_A Hypothetical protein sa 24.3 16 0.00055 36.0 0.0 8 14-21 2-9 (341)
16 2kxn_B Transformer-2 protein h 24.3 25 0.00084 30.9 1.2 21 14-34 2-22 (129)
17 2l2t_A Receptor tyrosine-prote 20.8 82 0.0028 24.6 3.3 29 60-88 9-38 (44)
No 1
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=67.42 E-value=4 Score=41.94 Aligned_cols=27 Identities=15% Similarity=0.426 Sum_probs=12.7
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHhhc
Q 005364 59 RRLSIGSVIFVLLLVLLATVLAYLYIS 85 (700)
Q Consensus 59 ~~~~~~~~~~~~~~~l~~~v~~~~~~s 85 (700)
+++-.+.++++|.+++++..++|.+..
T Consensus 34 ~~~~~~~~~~~l~~~~~~~~~~~~~~~ 60 (263)
T 3vmt_A 34 KRILLKILLTILIIIALFIGIMYFLST 60 (263)
T ss_dssp -CCTTHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445555555555555544444444433
No 2
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=44.91 E-value=7 Score=38.91 Aligned_cols=48 Identities=19% Similarity=0.244 Sum_probs=39.3
Q ss_pred ccccccccCCC-CCCEEEEEeCceeEecCHHHHHHHHHhcCCCeEEEecCC
Q 005364 537 IPKLLPHRLFP-SARYSIWLDSKLRLQRDPLLILEYFLWRKGYEYAISNHY 586 (700)
Q Consensus 537 ipKiLpHRLFP-nyrYSIWIDgKIqL~~DPllLLE~fLwr~n~~fAIskHp 586 (700)
+.|++...||| +++--||||+-+.+..|+..|.+.-+ ++..+|+..+.
T Consensus 88 ~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl--~~~~~aav~d~ 136 (276)
T 3tzt_A 88 YYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDI--SDYILAAASHT 136 (276)
T ss_dssp HHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCC--TTSSEEEEEC-
T ss_pred HHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCC--CCCeEEEEEec
Confidence 57888999999 69999999999999999998887432 55678888763
No 3
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=40.72 E-value=10 Score=37.93 Aligned_cols=47 Identities=11% Similarity=0.049 Sum_probs=37.8
Q ss_pred ccccccccCCCCCCEEEEEeCceeEecCHHHHHHHHHhcCCCeEEEecC
Q 005364 537 IPKLLPHRLFPSARYSIWLDSKLRLQRDPLLILEYFLWRKGYEYAISNH 585 (700)
Q Consensus 537 ipKiLpHRLFPnyrYSIWIDgKIqL~~DPllLLE~fLwr~n~~fAIskH 585 (700)
+.|++...+||+++-.||||+=+.+..|+..|.+.-+ ++..+|+..+
T Consensus 84 y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~l--~~~~~aav~d 130 (311)
T 1g9r_A 84 YARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDL--GDNWLGASID 130 (311)
T ss_dssp GGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCC--TTCSEEEEEC
T ss_pred HHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhccCC--CCcEEEEEec
Confidence 5677778889999999999999999999988887422 5566777654
No 4
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=32.44 E-value=25 Score=32.72 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHhhcCC
Q 005364 70 LLLVLLATVLAYLYISGY 87 (700)
Q Consensus 70 ~~~~l~~~v~~~~~~s~~ 87 (700)
+++++++..++|+++-+.
T Consensus 59 ~~~~i~~~a~~~~~~E~~ 76 (155)
T 2a9h_A 59 LVIVLLAGSYLAVLAERG 76 (155)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 334444455556676554
No 5
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=31.79 E-value=49 Score=23.52 Aligned_cols=15 Identities=40% Similarity=0.724 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhhc
Q 005364 71 LLVLLATVLAYLYIS 85 (700)
Q Consensus 71 ~~~l~~~v~~~~~~s 85 (700)
.+...++|++|.++|
T Consensus 12 viav~aaVllylW~s 26 (26)
T 3j1r_A 12 LIAVAAAVLLYTWVS 26 (26)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC
Confidence 334456788898876
No 6
>4g1u_A Hemin transport system permease protein HMUU; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=31.63 E-value=26 Score=37.09 Aligned_cols=9 Identities=67% Similarity=1.335 Sum_probs=0.0
Q ss_pred ccCCCCCCC
Q 005364 18 HHHNHNSNG 26 (700)
Q Consensus 18 ~~~~~~~~~ 26 (700)
|||+|++.|
T Consensus 7 ~~~~~~~~~ 15 (357)
T 4g1u_A 7 HHHHHHSSG 15 (357)
T ss_dssp ---------
T ss_pred ccccccCCC
Confidence 334444444
No 7
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=31.13 E-value=12 Score=38.44 Aligned_cols=18 Identities=44% Similarity=0.824 Sum_probs=5.7
Q ss_pred ccccccCCCCCCCCCCCC
Q 005364 14 GALHHHHNHNSNGTSFND 31 (700)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~ 31 (700)
|..||||+|..|+..|.|
T Consensus 1 ~~~~~~~~~~~~~~~fd~ 18 (336)
T 1ypf_A 1 GSSHHHHHHMGNVFDYED 18 (336)
T ss_dssp -----------CCCCGGG
T ss_pred CCcccccccccccCCcce
Confidence 567999999999999854
No 8
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=30.19 E-value=43 Score=26.22 Aligned_cols=28 Identities=29% Similarity=0.237 Sum_probs=13.5
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHhhcC
Q 005364 59 RRLSIGSVIFVLLLVLLATVLAYLYISG 86 (700)
Q Consensus 59 ~~~~~~~~~~~~~~~l~~~v~~~~~~s~ 86 (700)
..++|++.++.+.+++++.+....|+-+
T Consensus 10 ~~~~Ia~~vVGvll~vi~~l~~~~~~RR 37 (44)
T 2jwa_A 10 PLTSIISAVVGILLVVVLGVVFGILIKR 37 (44)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHhheeh
Confidence 4455666555544444444433444443
No 9
>3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal hydrolase; HET: PE4; 1.76A {Thermobifida alba}
Probab=29.01 E-value=12 Score=36.09 Aligned_cols=12 Identities=58% Similarity=0.855 Sum_probs=0.0
Q ss_pred cccCCCCCCCCC
Q 005364 17 HHHHNHNSNGTS 28 (700)
Q Consensus 17 ~~~~~~~~~~~~ 28 (700)
||||.|-.++..
T Consensus 1 ~~~~~~~~~~~~ 12 (306)
T 3vis_A 1 HHHHHHMSVTTP 12 (306)
T ss_dssp ------------
T ss_pred CCccccccccCc
Confidence 566666555543
No 10
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=28.89 E-value=34 Score=31.25 Aligned_cols=11 Identities=64% Similarity=1.208 Sum_probs=0.0
Q ss_pred ccccccCCCCC
Q 005364 14 GALHHHHNHNS 24 (700)
Q Consensus 14 ~~~~~~~~~~~ 24 (700)
|..||||||-.
T Consensus 2 ~~~~~~~~~~~ 12 (230)
T 2iai_A 2 GSSHHHHHHSS 12 (230)
T ss_dssp -----------
T ss_pred CCccccccccc
Confidence 66788887743
No 11
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=27.28 E-value=51 Score=25.64 Aligned_cols=29 Identities=24% Similarity=0.241 Sum_probs=15.2
Q ss_pred ccchhHHHHH-HHHHHHHHHHHHHhhcCCC
Q 005364 60 RLSIGSVIFV-LLLVLLATVLAYLYISGYS 88 (700)
Q Consensus 60 ~~~~~~~~~~-~~~~l~~~v~~~~~~s~~~ 88 (700)
..+|++.|+. +++++++.++.+.|+.+-.
T Consensus 10 ~~~IA~gVVgGv~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 10 IPSIATGMVGALLLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp SSSSTHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cceEEeehhHHHHHHHHHHHHHHHHhhhhH
Confidence 3455555554 4444444445567776654
No 12
>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*
Probab=26.53 E-value=22 Score=38.16 Aligned_cols=41 Identities=22% Similarity=0.165 Sum_probs=27.0
Q ss_pred cCcccccccccCCCCCCCCCCcCCHhhHhhh-ccCcEEE-EeeeeCCC
Q 005364 424 RDQKINCGFVKAPEGYPSTGFDLAEDDANYN-SRCHIAV-ISCIFGNS 469 (700)
Q Consensus 424 ~~~~vhCGF~~g~~~~~~~GFdi~e~D~~~M-~~CKIVV-YTAIFGnY 469 (700)
.+.-|.|-++ +. +.| .=|.+++.+.| ++--||| .+|=.|+-
T Consensus 264 aDivIn~vli-g~-~aP---~Lvt~e~v~~m~k~gsVIVDVA~D~GG~ 306 (394)
T 2qrj_A 264 ADIFINCIYL-SK-PIA---PFTNMEKLNNPNRRLRTVVDVSADTTNP 306 (394)
T ss_dssp SSEEEECCCC-CS-SCC---CSCCHHHHCCTTCCCCEEEETTCCTTCT
T ss_pred CCEEEECcCc-CC-CCC---cccCHHHHhcCcCCCeEEEEEecCCCCC
Confidence 4558899998 43 232 35889999999 5444666 56666654
No 13
>2kse_A Sensor protein QSEC; methods development, histidine kinase receptor, membrane domain, two-helical hairpin, cell-free synthesis, ATP- binding; NMR {Escherichia coli}
Probab=25.63 E-value=48 Score=28.57 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=18.9
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHhhcCCCC
Q 005364 59 RRLSIGSVIFVLLLVLLATVLAYLYISGYSN 89 (700)
Q Consensus 59 ~~~~~~~~~~~~~~~l~~~v~~~~~~s~~~~ 89 (700)
.|+.+..+++++++++++++++|..+...-+
T Consensus 12 ~RL~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (186)
T 2kse_A 12 VRLTLIFLILASVTWLLSSFVAWKQTTDNVD 42 (186)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHSCCCSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666677777776655544
No 14
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=24.34 E-value=11 Score=28.36 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=15.0
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHhh
Q 005364 59 RRLSIGSVIFVLLLVLLATVLAYLYI 84 (700)
Q Consensus 59 ~~~~~~~~~~~~~~~l~~~v~~~~~~ 84 (700)
+.++|+|.++.+++++++.+...-||
T Consensus 6 ~~~sIaagVvglll~vii~l~~~~~i 31 (35)
T 1iij_A 6 PVTFIIATVVGVLLFLILVVVVGILI 31 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTHHH
T ss_pred CCcEeHHHHHHHHHHHHHHHHhheEE
Confidence 45677777766555555544444444
No 15
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=24.33 E-value=16 Score=35.99 Aligned_cols=8 Identities=63% Similarity=1.282 Sum_probs=0.0
Q ss_pred ccccccCC
Q 005364 14 GALHHHHN 21 (700)
Q Consensus 14 ~~~~~~~~ 21 (700)
|..||||+
T Consensus 2 ~~~~~~~~ 9 (341)
T 3un6_A 2 GSSHHHHH 9 (341)
T ss_dssp --------
T ss_pred CCcccccc
Confidence 44455543
No 16
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=24.31 E-value=25 Score=30.93 Aligned_cols=21 Identities=38% Similarity=0.678 Sum_probs=0.0
Q ss_pred ccccccCCCCCCCCCCCCceE
Q 005364 14 GALHHHHNHNSNGTSFNDHVS 34 (700)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~ 34 (700)
|..||||.|...--.+..|.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~h~~ 22 (129)
T 2kxn_B 2 GSSHHHHHHSSGLVPRGSHMA 22 (129)
T ss_dssp ---------------------
T ss_pred Cccccccccccccccchhccc
Confidence 556776655544355556653
No 17
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=20.81 E-value=82 Score=24.60 Aligned_cols=29 Identities=14% Similarity=0.235 Sum_probs=15.8
Q ss_pred ccchhHHHHH-HHHHHHHHHHHHHhhcCCC
Q 005364 60 RLSIGSVIFV-LLLVLLATVLAYLYISGYS 88 (700)
Q Consensus 60 ~~~~~~~~~~-~~~~l~~~v~~~~~~s~~~ 88 (700)
..+|++-|+. +++|+++.++.+.|+.+-.
T Consensus 9 ~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 9 TPLIAAGVIGGLFILVIVGLTFAVYVRRKS 38 (44)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cceEEEeehHHHHHHHHHHHHHHHHhhhhh
Confidence 4456655554 4444444455577776654
Done!