Query 005364
Match_columns 700
No_of_seqs 122 out of 142
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 23:15:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005364.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005364hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ga8a_ c.68.1.4 (A:) Galactos 74.1 0.97 7.1E-05 41.7 3.5 108 537-678 84-197 (282)
2 d1lzia_ c.68.1.9 (A:) Glycosyl 36.0 5.1 0.00037 39.2 1.1 113 444-565 38-158 (283)
3 d1ll2a_ c.68.1.14 (A:) Glycoge 24.6 23 0.0017 31.7 3.4 43 537-585 84-126 (263)
4 d2axti1 f.23.37.1 (I:1-35) Pho 22.9 46 0.0033 23.3 3.9 21 71-91 11-31 (35)
5 d1o7qa_ c.68.1.9 (A:) alpha-1, 19.3 6 0.00044 38.8 -1.9 112 444-564 32-152 (287)
6 d1xmec1 f.23.9.1 (C:2-34) Bact 16.2 56 0.0041 22.3 3.0 16 63-78 5-20 (33)
7 d2drpa2 g.37.1.1 (A:140-165) T 8.0 39 0.0028 22.1 0.0 8 362-369 2-9 (26)
8 d2h8pc1 f.14.1.1 (C:22-78) Pot 7.9 1.6E+02 0.012 21.8 3.7 26 62-87 7-32 (57)
9 d1wg5a_ d.58.7.1 (A:) Heteroge 7.5 2.1E+02 0.016 21.9 4.4 54 430-500 17-71 (104)
10 d1wvka_ g.82.1.1 (A:) Expresse 7.0 1.2E+02 0.009 24.6 2.7 18 40-57 14-31 (86)
No 1
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]}
Probab=74.09 E-value=0.97 Score=41.70 Aligned_cols=108 Identities=12% Similarity=0.081 Sum_probs=69.1
Q ss_pred ccccccccCCCCCCEEEEEeCceeEecCHHHHHHHHHhcCCCeEEEecCCCCCcHHHHHHHHHHhccCChHHHHHHHHHH
Q 005364 537 IPKLLPHRLFPSARYSIWLDSKLRLQRDPLLILEYFLWRKGYEYAISNHYDRHCVWEEVAQNKKLNKYNHTVIDQQFAFY 616 (700)
Q Consensus 537 ipKiLpHRLFPnyrYSIWIDgKIqL~~DPllLLE~fLwr~n~~fAIskHp~R~CVYEEAeAckrl~K~~~~~Id~Qme~Y 616 (700)
+.+++.+.+||+++-.||||+=+.+..|+..|.+.-+ ++..+|+..+.... .+-...
T Consensus 84 y~Rl~l~~~lp~~~kiiyLD~D~iv~~dl~~L~~~~~--~~~~~aa~~d~~~~---------------------~~~~~~ 140 (282)
T d1ga8a_ 84 YARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDL--GDNWLGASIDLFVE---------------------RQEGYK 140 (282)
T ss_dssp GGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCC--TTCSEEEEECHHHH---------------------TSTTHH
T ss_pred HHHHHHhhhCCccceEEEecCCEEEecchHHHHhccc--ccceeeeehhhhhh---------------------hhhhhH
Confidence 4677888899999999999999999999988876432 55667777542111 111223
Q ss_pred HHcCCCCCCCCCCCCCCCCCCCCceEEEccCC-----cchhhhHHHHHHHH-hcCCCCccchHHHHHH
Q 005364 617 QADGLKRFDPSDPDRLLPSNVPEGSFIVRAHT-----PMSNLFSCLWFNEV-DRFTSRDQLSFAYTYQ 678 (700)
Q Consensus 617 k~eGLp~~~~sdp~kl~pSdLpEgnVIVReHt-----p~sNlFmCLWFNEV-~rFT~RDQLSFaYVlw 678 (700)
...|+++. ...+-++|++-... .+...++ .|.++. ..+.--||=.|+.++.
T Consensus 141 ~~~~~~~~----------~~yfNsGVml~n~~~~r~~~~~~~~~-~~~~~~~~~~~~~DQd~LN~~f~ 197 (282)
T d1ga8a_ 141 QKIGMADG----------EYYFNAGVLLINLKKWRRHDIFKMSS-EWVEQYKDVMQYQDQDILNGLFK 197 (282)
T ss_dssp HHTTCCTT----------SCCEEEEEEEECHHHHTTSCHHHHHH-HHHHHHTTTCSSTHHHHHHHHHT
T ss_pred HHhCCCCC----------CceeecceeeechhhhhhhhHHHHHH-HHHHhcccCcccCchhHHHHHhc
Confidence 34455432 13577888776432 2233333 344554 3455689999998874
No 2
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.99 E-value=5.1 Score=39.21 Aligned_cols=113 Identities=15% Similarity=0.210 Sum_probs=54.4
Q ss_pred CcCCHhhHhhhccC-cEEEEeeeeCCCccccCCCCCcccc--cCCCCceEEEEecccchhhhcccCCCCCCCCcccceE-
Q 005364 444 FDLAEDDANYNSRC-HIAVISCIFGNSDRLRIPVGKTVTR--LSRKNVCFVMFTDELTLQTLSSEGQIPDRTGFIGLWK- 519 (700)
Q Consensus 444 Fdi~e~D~~~M~~C-KIVVYTAIFGnYD~L~qP~~~~is~--~s~knVcFicFTDe~tL~sl~~~g~vpd~~~~vG~WR- 519 (700)
|+.+=-+..|-.+. .|.|..--+|.|-...+.--.+++. +-.-++-|+.|||.... +|.-.. -..-+
T Consensus 38 ~~~~~l~~~~~~~~~tIgl~vfATGkY~~Fl~~f~eSaek~Fmpg~~v~yyvFTD~~~~--------vP~i~l-~~~~~v 108 (283)
T d1lzia_ 38 FNIDILNEQFRLQNTTIGLTVFAIKKYVAFLKLFLETAEKHFMVGHRVHYYVFTDQPAA--------VPRVTL-GTGRQL 108 (283)
T ss_dssp CCHHHHHHHHHTTTCEEEEEEEECGGGGGGHHHHHHHHHHHBSTTSEEEEEEEESCGGG--------SCCCCC-CTTEEE
T ss_pred CCHHHHHHHHhhCCceEEEEEEEeChHHHHHHHHHHHHHHhcCCCCeeEEEEEECCCcc--------CCcccc-ccCCce
Confidence 44444444454433 2666666677786543221100000 22356889999997542 221100 01223
Q ss_pred -EEEcc-CC--CCcccccccCccccccccCCCCCCEEEEEeCceeEecCH
Q 005364 520 -MVVVK-NL--PYDDMRRVGKIPKLLPHRLFPSARYSIWLDSKLRLQRDP 565 (700)
Q Consensus 520 -IV~Vk-nl--Py~D~RRngRipKiLpHRLFPnyrYSIWIDgKIqL~~DP 565 (700)
++.|. .. |+..++|..-+-|...-+++-+++|-+++|+++.++...
T Consensus 109 ~v~~i~~~~~Wp~iTL~R~~~i~k~i~~~~~~e~DyLf~~DaDm~f~~~v 158 (283)
T d1lzia_ 109 SVLEVRAYKRWQDVSMRRMEMISDFCERRFLSEVDYLVCVDVDMEFRDHV 158 (283)
T ss_dssp EEEECC-------------------CHHHHHHHCSEEEEECSSEEECSCB
T ss_pred EEEeccCCCCCchHHHHHHHHHHHHHHHHhhhcCCEEEEeecceEEeccc
Confidence 34444 23 444555555454544557789999999999999998653
No 3
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=24.63 E-value=23 Score=31.68 Aligned_cols=43 Identities=12% Similarity=0.091 Sum_probs=32.8
Q ss_pred ccccccccCCCCCCEEEEEeCceeEecCHHHHHHHHHhcCCCeEEEecC
Q 005364 537 IPKLLPHRLFPSARYSIWLDSKLRLQRDPLLILEYFLWRKGYEYAISNH 585 (700)
Q Consensus 537 ipKiLpHRLFPnyrYSIWIDgKIqL~~DPllLLE~fLwr~n~~fAIskH 585 (700)
+.|++.-. +++|+-.||||+-+.++.|+..|.+ .....|+..+
T Consensus 84 y~Kl~i~~-l~~ydkvlYLDaD~lv~~~id~Lf~-----~~~~~a~~~~ 126 (263)
T d1ll2a_ 84 LTKLHCWS-LTQYSKCVFMDADTLVLANIDDLFE-----REELSAAPDP 126 (263)
T ss_dssp HHHGGGGG-CTTCSEEEEECTTEEECSCCGGGGG-----SCSSEEEECS
T ss_pred hHHHHHhh-hcccceEEEeCCCEEEecCHHHHhc-----CCccceeccC
Confidence 56888877 5889999999999999999876654 3444555554
No 4
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=22.88 E-value=46 Score=23.30 Aligned_cols=21 Identities=14% Similarity=0.467 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCC
Q 005364 71 LLVLLATVLAYLYISGYSNHN 91 (700)
Q Consensus 71 ~~~l~~~v~~~~~~s~~~~~~ 91 (700)
.+.+.|..|.+-++|.|+..|
T Consensus 11 vV~fFv~lFiFGFLSnDP~Rn 31 (35)
T d2axti1 11 VVTFFVLLFVFGFLSGDPARN 31 (35)
T ss_dssp HHHHHHHHHHHHHHTTCTTCS
T ss_pred HHHHHHHHHHHhhccCCCCCC
Confidence 344556778899999999644
No 5
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=19.32 E-value=6 Score=38.76 Aligned_cols=112 Identities=15% Similarity=0.226 Sum_probs=63.5
Q ss_pred CcCCHhhHhhhccC-cEEEEeeeeCCC-c-cccCCCCCcccc--cCCCCceEEEEecccchhhhcccCCCCCCC-Ccccc
Q 005364 444 FDLAEDDANYNSRC-HIAVISCIFGNS-D-RLRIPVGKTVTR--LSRKNVCFVMFTDELTLQTLSSEGQIPDRT-GFIGL 517 (700)
Q Consensus 444 Fdi~e~D~~~M~~C-KIVVYTAIFGnY-D-~L~qP~~~~is~--~s~knVcFicFTDe~tL~sl~~~g~vpd~~-~~vG~ 517 (700)
|+.+=-+..|-.+. .|.|.+--+|.| + -|..=. .+++. +..-.|-|+.|||.... +|.-. +..-.
T Consensus 32 ~~~~~l~~~y~~~~~tIgl~vfAtgkY~~~Fl~~Fl-eSaEk~Fm~g~~v~yyVFTD~~~~--------~P~i~l~~~r~ 102 (287)
T d1o7qa_ 32 YNRAVLDNYYAKQKITVGLTVFAVGRYIEHYLEEFL-TSANKHFMVGHPVIFYIMVDDVSR--------MPLIELGPLRS 102 (287)
T ss_dssp BCHHHHHHHHHHHTCCEEEEEEECTTHHHHHHHHHH-HHHHHHBSTTSCEEEEEEESCGGG--------CCCCCCCTTEE
T ss_pred CCHHHHHHHHhhcCceEEEEEEEeChhHHHHHHHHH-HHHHHhcCCCCeEEEEEEECCccc--------CCccccCCccc
Confidence 55554555555533 488888888998 5 342110 00000 22357999999998532 22111 00012
Q ss_pred eEEEEccC-C--CCcccccccCccccccccCCCCCCEEEEEeCceeEecC
Q 005364 518 WKMVVVKN-L--PYDDMRRVGKIPKLLPHRLFPSARYSIWLDSKLRLQRD 564 (700)
Q Consensus 518 WRIV~Vkn-l--Py~D~RRngRipKiLpHRLFPnyrYSIWIDgKIqL~~D 564 (700)
=+++.|.. . |+..++|.--+-|...-+++.+++|-+++|+.+.++..
T Consensus 103 ~~v~~v~~~~~Wp~iTL~Rm~~i~~~i~~~~~~e~Dylf~~DaDm~f~~~ 152 (287)
T d1o7qa_ 103 FKVFKIKPEKRWQDISMMRMKTIGEHIVAHIQHEVDFLFCMDVDQVFQDK 152 (287)
T ss_dssp EEEEECCCCSSHHHHHHHHHHHHHHHHHHTHHHHCSEEEEECSSEEECSC
T ss_pred eEEEEccccCCCchhHHHHHHHHHHHHHHhhhccCCeEEEEeCCceEecc
Confidence 24455543 3 33455554444444456778899999999999999854
No 6
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=16.21 E-value=56 Score=22.35 Aligned_cols=16 Identities=31% Similarity=0.492 Sum_probs=7.4
Q ss_pred hhHHHHHHHHHHHHHH
Q 005364 63 IGSVIFVLLLVLLATV 78 (700)
Q Consensus 63 ~~~~~~~~~~~l~~~v 78 (700)
+||+-+|+.|.|+..|
T Consensus 5 ~gal~vi~il~l~ilv 20 (33)
T d1xmec1 5 KGALAVILVLTLTILV 20 (33)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHH
Confidence 4555444444444333
No 7
>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}
Probab=8.01 E-value=39 Score=22.08 Aligned_cols=8 Identities=13% Similarity=0.239 Sum_probs=6.0
Q ss_pred cCcccccc
Q 005364 362 SSCEVKIL 369 (700)
Q Consensus 362 ~~C~i~~~ 369 (700)
.|||+||-
T Consensus 2 ypcp~cfk 9 (26)
T d2drpa2 2 YPCPFCFK 9 (26)
T ss_dssp EECTTTCC
T ss_pred cCCchhhH
Confidence 47888884
No 8
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=7.88 E-value=1.6e+02 Score=21.83 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=15.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcCC
Q 005364 62 SIGSVIFVLLLVLLATVLAYLYISGY 87 (700)
Q Consensus 62 ~~~~~~~~~~~~l~~~v~~~~~~s~~ 87 (700)
.+|++++++++++++.-.+-+++-++
T Consensus 7 ~~~~~~~~~~i~i~~~s~~~y~~E~~ 32 (57)
T d2h8pc1 7 AAGAATVLLVIVLLAGSYLAVLAERG 32 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45666666666666655555555443
No 9
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.50 E-value=2.1e+02 Score=21.88 Aligned_cols=54 Identities=13% Similarity=0.166 Sum_probs=31.8
Q ss_pred cccccCCCCCCCCCCcCCHhhH-hhhccCcEEEEeeeeCCCccccCCCCCcccccCCCCceEEEEecccchh
Q 005364 430 CGFVKAPEGYPSTGFDLAEDDA-NYNSRCHIAVISCIFGNSDRLRIPVGKTVTRLSRKNVCFVMFTDELTLQ 500 (700)
Q Consensus 430 CGF~~g~~~~~~~GFdi~e~D~-~~M~~CKIVVYTAIFGnYD~L~qP~~~~is~~s~knVcFicFTDe~tL~ 500 (700)
|=||++-| |++.+.|+ .++.+|.+++. +|. +..+.. + ..+.+|||.|.+....+
T Consensus 17 ~v~v~nLP------~~~te~dI~~~F~~~g~v~~-~v~-----~~~~~~-~----~~kG~afV~F~~~e~a~ 71 (104)
T d1wg5a_ 17 FVRLRGLP------FGCSKEEIVQFFSGLEIVPN-GMT-----LPVDFQ-G----RSTGEAFVQFASQEIAE 71 (104)
T ss_dssp EEEEESCC------TTCCHHHHHHHTTTCCEEEE-EEE-----CCBCSS-S----CBCSEEEEEESSHHHHH
T ss_pred EEEEeCCC------CCCCHHHHHHHHHhcCCceE-EEE-----EEeCCC-C----CcceEEEEEeCCHHHHH
Confidence 45777755 78888776 56677765443 221 111111 1 13679999999965543
No 10
>d1wvka_ g.82.1.1 (A:) Expressed protein At2g23090/F21P24.15 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=6.99 E-value=1.2e+02 Score=24.63 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=10.0
Q ss_pred CCCCCCcccccCCCCCCC
Q 005364 40 APYNKPARARRSARSDKN 57 (700)
Q Consensus 40 ~~~~~~~~~rr~~~~~~~ 57 (700)
+......|.|...+....
T Consensus 14 g~Ka~~~Rern~~k~~~a 31 (86)
T d1wvka_ 14 AQKSAMARAKNLEKAKAA 31 (86)
T ss_dssp SGGGTTTSTTTCCCSSSS
T ss_pred HHHHHHHHHHHHHhcccC
Confidence 445556666655555433
Done!