BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005365
(700 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S28|A Chain A, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|B Chain B, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|C Chain C, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|D Chain D, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|E Chain E, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|F Chain F, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|G Chain G, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|H Chain H, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S29|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 1169 bits (3024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 570/749 (76%), Positives = 630/749 (84%), Gaps = 50/749 (6%)
Query: 2 AERALTRVHSLRERLDETLSAHRNEILALLSRIEGKGKGILQNHQLIAEFESISEENRKH 61
AER +TRVHS RERL+ETL + RNE+LALLSR+E KGKGILQ +Q+IAEFE++ E+ RK
Sbjct: 4 AERMITRVHSQRERLNETLVSERNEVLALLSRVEAKGKGILQQNQIIAEFEALPEQTRKK 63
Query: 62 LTEGAFGEVLRATQEAIVLPPWVALAVRPRPGVWEYIRVNVHXXXXXXXXXXXYLHFKEE 121
L G F ++L++TQEAIVLPPWVALAVRPRPGVWEY+RVN+H +LHFKEE
Sbjct: 64 LEGGPFFDLLKSTQEAIVLPPWVALAVRPRPGVWEYLRVNLHALVVEELQPAEFLHFKEE 123
Query: 122 LVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEF 181
LVDG NGNF LELDFEPFNAS PRPTL K IGNGV+FLNRHLSAKLFHDKES+ PLL+F
Sbjct: 124 LVDGVKNGNFTLELDFEPFNASIPRPTLHKYIGNGVDFLNRHLSAKLFHDKESLLPLLKF 183
Query: 182 LRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYLTTVVPETPFSELALRFQEIGLERGWG 241
LR+H H+GKN+ML+++IQNLN+LQH LRKAEEYL + ET + E +F+EIGLERGWG
Sbjct: 184 LRLHSHQGKNLMLSEKIQNLNTLQHTLRKAEEYLAELKSETLYEEFEAKFEEIGLERGWG 243
Query: 242 DTAERALEMIQXXXXXXEAPDPCTLETFLGRIPMVFNVVILTPHGYFAQDDVLGYPDTGG 301
D AER L+MI+ EAPDPCTLETFLGR+PMVFNVVIL+PHGYFAQD+VLGYPDTGG
Sbjct: 244 DNAERVLDMIRLLLDLLEAPDPCTLETFLGRVPMVFNVVILSPHGYFAQDNVLGYPDTGG 303
Query: 302 QVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSD 361
QVVYILDQVRALE EML RIKQQGL+I P+ILI+TRLLPDAVGTTCG+RLE+VY ++Y D
Sbjct: 304 QVVYILDQVRALEIEMLQRIKQQGLNIKPRILILTRLLPDAVGTTCGERLERVYDSEYCD 363
Query: 362 ILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVAS 421
ILRVPFRTEKG+VRKWISRFEVWPYLETYTED AVE++KEL GKPDLIIGNYSDGN+VAS
Sbjct: 364 ILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSKELNGKPDLIIGNYSDGNLVAS 423
Query: 422 LLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTF 481
LLAHKLGVTQCTIAHALEKTKYPDSDIYWK LDDKYHFSCQFTAD+ AMNHTDFIITSTF
Sbjct: 424 LLAHKLGVTQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITSTF 483
Query: 482 QEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRL 541
QEIAGSK+TVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRL
Sbjct: 484 QEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRL 543
Query: 542 KSFHPEIEELLYSDVENKEHL--------------------------------------- 562
FH EIEELLYSDVENKEHL
Sbjct: 544 TKFHSEIEELLYSDVENKEHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLREL 603
Query: 563 -----------KESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICD 611
KESKD EE+AEMKKMY LI++YKLNGQFRWISSQM+RVRNGELYRYICD
Sbjct: 604 ANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICD 663
Query: 612 TKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEI 671
TKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIV+GKSG+HIDPYHG+QAA+
Sbjct: 664 TKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAADT 723
Query: 672 LVDFFEKCKADPSYWDKISLGGLKRIEEK 700
L DFF KCK DPS+WD+IS GGL+RIEEK
Sbjct: 724 LADFFTKCKEDPSHWDEISKGGLQRIEEK 752
>pdb|3S27|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 1137 bits (2941), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 560/749 (74%), Positives = 620/749 (82%), Gaps = 50/749 (6%)
Query: 2 AERALTRVHSLRERLDETLSAHRNEILALLSRIEGKGKGILQNHQLIAEFESISEENRKH 61
AER +TRVHS RERL+ETL + RNE+LALLSR+E KGKGILQ +Q+IAEFE++ E+ RK
Sbjct: 4 AERXITRVHSQRERLNETLVSERNEVLALLSRVEAKGKGILQQNQIIAEFEALPEQTRKK 63
Query: 62 LTEGAFGEVLRATQEAIVLPPWVALAVRPRPGVWEYIRVNVHXXXXXXXXXXXYLHFKEE 121
L G F ++L++TQEAIVLPPWVALAVRPRPGVWEY+RVN+H +LHFKEE
Sbjct: 64 LEGGPFFDLLKSTQEAIVLPPWVALAVRPRPGVWEYLRVNLHALVVEELQPAEFLHFKEE 123
Query: 122 LVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEF 181
LVDG NGNF LELDFEPFNAS PRPTL K IGNGV+FLNRHLSAKLFHDKES+ PLL+F
Sbjct: 124 LVDGVKNGNFTLELDFEPFNASIPRPTLHKYIGNGVDFLNRHLSAKLFHDKESLLPLLKF 183
Query: 182 LRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYLTTVVPETPFSELALRFQEIGLERGWG 241
LR+H H+GKN+ L+++IQNLN+LQH LRKAEEYL + ET + E +F+EIGLERGWG
Sbjct: 184 LRLHSHQGKNLXLSEKIQNLNTLQHTLRKAEEYLAELKSETLYEEFEAKFEEIGLERGWG 243
Query: 242 DTAERALEMIQXXXXXXEAPDPCTLETFLGRIPMVFNVVILTPHGYFAQDDVLGYPDTGG 301
D AER L+ I+ EAPDPCTLETFLGR+P VFNVVIL+PHGYFAQD+VLGYPDTGG
Sbjct: 244 DNAERVLDXIRLLLDLLEAPDPCTLETFLGRVPXVFNVVILSPHGYFAQDNVLGYPDTGG 303
Query: 302 QVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSD 361
QVVYILDQVRALE E L RIKQQGL+I P+ILI+TRLLPDAVGTTCG+RLE+VY ++Y D
Sbjct: 304 QVVYILDQVRALEIEXLQRIKQQGLNIKPRILILTRLLPDAVGTTCGERLERVYDSEYCD 363
Query: 362 ILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVAS 421
ILRVPFRTEKG+VRKWISRFEVWPYLETYTED AVE++KEL GKPDLIIGNYSDGN+VAS
Sbjct: 364 ILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSKELNGKPDLIIGNYSDGNLVAS 423
Query: 422 LLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTF 481
LLAHKLGVTQCTIAHALEKTKYPDSDIYWK LDDKYHFSCQFTAD+ A NHTDFIITSTF
Sbjct: 424 LLAHKLGVTQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAXNHTDFIITSTF 483
Query: 482 QEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRL 541
QEIAGSK+TVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGAD SIYFPYTEEKRRL
Sbjct: 484 QEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADXSIYFPYTEEKRRL 543
Query: 542 KSFHPEIEELLYSDVENKEHL--------------------------------------- 562
FH EIEELLYSDVENKEHL
Sbjct: 544 TKFHSEIEELLYSDVENKEHLCVLKDKKKPILFTXARLDRVKNLSGLVEWYGKNTRLREL 603
Query: 563 -----------KESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICD 611
KESKD EE+AE KK Y LI++YKLNGQFRWISSQ +RVRNGELYRYICD
Sbjct: 604 ANLVVVGGDRRKESKDNEEKAEXKKXYDLIEEYKLNGQFRWISSQXDRVRNGELYRYICD 663
Query: 612 TKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEI 671
TKGAFVQPALYEAFGLTVVEA TCGLPTFATCKGGPAEIIV+GKSG+HIDPYHG+QAA+
Sbjct: 664 TKGAFVQPALYEAFGLTVVEAXTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAADT 723
Query: 672 LVDFFEKCKADPSYWDKISLGGLKRIEEK 700
L DFF KCK DPS+WD+IS GGL+RIEEK
Sbjct: 724 LADFFTKCKEDPSHWDEISKGGLQRIEEK 752
>pdb|2R60|A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of
Halothermothrix Orenii
pdb|2R66|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-F6p
Of Halothermothrix Orenii
pdb|2R68|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-S6p
Of Halothermothrix Orenii
Length = 499
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 128/472 (27%), Positives = 201/472 (42%), Gaps = 87/472 (18%)
Query: 278 NVVILTPHGYFAQDDVLG--YPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILII 335
+V L P G F D +PD GGQ+VY+ E+ L + + G+ Q+ II
Sbjct: 9 HVAFLNPQGNFDPADSYWTEHPDFGGQLVYV--------KEVSLALAEMGV----QVDII 56
Query: 336 TRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVA 395
TR + D ++ T I+R+PF +K ++ + E+WPYL Y +
Sbjct: 57 TRRIKDENWPEFSGEIDYYQETNKVRIVRIPFGGDK-----FLPKEELWPYLHEYVNKI- 110
Query: 396 VEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDI---YWKN 452
+ +E P ++ +Y DG + LL + G+ H+L K ++ +K
Sbjct: 111 INFYREEGKFPQVVTTHYGDGGLAGVLLKNIKGLPFTFTGHSLGAQKMEKLNVNTSNFKE 170
Query: 453 LDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGI 512
+D+++ F + A+ + M++ D II ST QE GQY SH LYR +
Sbjct: 171 MDERFKFHRRIIAERLTMSYADKIIVSTSQE------RFGQY-SHD------LYRGAVNV 217
Query: 513 DVFDPKFNIVSPGADMSIYFPYTEEK----------RRLKSFHPEIEELLYSD------- 555
+ D KF+++ PG + ++ +K R L S E+ ++ S
Sbjct: 218 ED-DDKFSVIPPGVNTRVFDGEYGDKIKAKITKYLERDLGSERMELPAIIASSRLDQKKN 276
Query: 556 --------VENKEHLKESKDL-------------------EEQAEMKKMYSLIDQYKLNG 588
V+NKE L++ +L EE+ + K+ LID G
Sbjct: 277 HYGLVEAYVQNKE-LQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRG 335
Query: 589 QFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPA 648
+ + G Y Y+ F + YE FGL VEAM GLP T GGPA
Sbjct: 336 KVSMFPLNSQQELAG-CYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNGGPA 394
Query: 649 EIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEK 700
EI+ GK G +DP E A L+ FE + +Y +K G +R+EE+
Sbjct: 395 EILDGGKYGVLVDPEDPEDIARGLLKAFESEETWSAYQEK----GKQRVEER 442
>pdb|2JJM|A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|B Chain B, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|C Chain C, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|D Chain D, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|E Chain E, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|F Chain F, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|G Chain G, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|H Chain H, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|I Chain I, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|J Chain J, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|K Chain K, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|L Chain L, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558
Length = 394
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 623 EAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGY 658
E+FGL ++EAM CG+P T GG E+I +G +GY
Sbjct: 295 ESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGY 330
>pdb|3MBO|A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|B Chain B, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|C Chain C, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|D Chain D, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|E Chain E, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|F Chain F, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|G Chain G, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|H Chain H, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
Length = 414
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 623 EAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGY 658
E+FGL ++EAM CG+P T GG E+I +G +GY
Sbjct: 315 ESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGY 350
>pdb|2IW1|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
In Lipopolysaccharide Biosynthesis
Length = 374
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 616 FVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHI-DPYHGEQAAEIL 672
+ PA EA G+ ++EA+T GLP T G A I + G I +P+ EQ E+L
Sbjct: 274 LLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVL 331
>pdb|2F9F|A Chain A, Crystal Structure Of The Putative Mannosyl Transferase
(Wbaz-1)from Archaeoglobus Fulgidus, Northeast
Structural Genomics Target Gr29a
Length = 177
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 623 EAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKAD 682
E FGLT +EA G P A +GG E ++N K+GY ++ E ++D +K +
Sbjct: 108 EDFGLTPIEAXASGKPVIAVNEGGFKETVINEKTGYLVNADVNE-----IIDAXKKVSKN 162
Query: 683 PSYWDKISLGGLKRIEE 699
P DK +R +E
Sbjct: 163 P---DKFKKDCFRRAKE 176
>pdb|2IV7|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
In Lipopolysaccharide Biosynthesis
Length = 374
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 619 PALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHI-DPYHGEQAAEIL 672
PA EA G+ ++EA+T GLP T G A I + G I +P+ EQ E+L
Sbjct: 277 PAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVL 331
>pdb|2X6Q|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6Q|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6R|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
pdb|2X6R|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
Length = 416
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 615 AFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHI 660
+Q ++ E FGLTV EAM G P GG IV+G++G+ +
Sbjct: 318 VILQMSIREGFGLTVTEAMWKGKPVIGRAVGGIKFQIVDGETGFLV 363
>pdb|2XA1|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
pdb|2XA1|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
Length = 416
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 615 AFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGY 658
+Q ++ E FGLTV EA G P GG IV+G++G+
Sbjct: 318 VILQXSIREGFGLTVTEAXWKGKPVIGRAVGGIKFQIVDGETGF 361
>pdb|2XMP|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XMP|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XA2|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA2|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
Length = 416
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 615 AFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHI 660
+Q ++ FGLTV EAM G P GG IV+G++G+ +
Sbjct: 318 VILQMSIRAGFGLTVTEAMWKGKPVIGRAVGGIKFQIVDGETGFLV 363
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
Length = 439
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 587 NGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGG 646
+G + I+ ++R E R + + + P+ +E FGL +EAM G A+ GG
Sbjct: 309 HGNVKVITEMLSR----EFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGG 364
Query: 647 PAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPS 684
+II N ++G + + A ++ E ++D S
Sbjct: 365 LRDIITN-ETGILVKAGDPGELANAILKALELSRSDLS 401
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
Length = 428
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 587 NGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGG 646
+G + I+ ++R E R + + + P+ +E FGL +EAM G A+ GG
Sbjct: 309 HGNVKVITEMLSR----EFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGG 364
Query: 647 PAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPS 684
+II N ++G + + A ++ E ++D S
Sbjct: 365 LRDIITN-ETGILVKAGDPGELANAILKALELSRSDLS 401
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
Length = 440
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 587 NGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGG 646
+G + I+ ++R E R + + + P+ +E FGL +EAM G A+ GG
Sbjct: 310 HGNVKVITEMLSR----EFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGG 365
Query: 647 PAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPS 684
+II N ++G + + A ++ E ++D S
Sbjct: 366 LRDIITN-ETGILVKAGDPGELANAILKALELSRSDLS 402
>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4Q|B Chain B, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4V|A Chain A, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P.
pdb|3C4V|B Chain B, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P
Length = 426
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 619 PALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFE 677
P+ E+FGL +EA G P A GG + G++G +D + A+ L +
Sbjct: 312 PSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLLD 370
>pdb|3GF3|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Glutaconyl-Coa
pdb|3GF7|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Apoprotein
pdb|3GLM|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GLM|B Chain B, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GLM|C Chain C, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GLM|D Chain D, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GMA|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Glutaryl-Coa
pdb|3GMA|B Chain B, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Glutaryl-Coa
Length = 588
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 25/157 (15%)
Query: 241 GDTAERA--LEMIQXXXXXXEAPDPCTLETFLGRIPMVFNVVILTPHGYFAQDDVLGYPD 298
GD AE+A L + Q E +LE + + + V+ P G +G
Sbjct: 423 GDEAEKAELLGLGQSLIYSIENSKLPSLEITIRKASAAAHYVLGGPQGNNTNVFSIG--- 479
Query: 299 TGGQVVYIL---DQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVY 355
TG Y++ A+ L++ K+ G D+ P I + ++
Sbjct: 480 TGACEYYVMPGETAANAMYSRKLVKAKKAGEDLQPIIGKMNDMI---------------- 523
Query: 356 GTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTE 392
Y+D R + TEKG+V + + EV PY++ +TE
Sbjct: 524 -QMYTDKSRPKYCTEKGMVDEIVDMTEVRPYIQAFTE 559
>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure.
pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure
Length = 438
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 619 PALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFE 677
P+ E+FGL +EA G P A GG + G++G +D + A+ L +
Sbjct: 332 PSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLLD 390
>pdb|2BFW|A Chain A, Structure Of The C Domain Of Glycogen Synthase From
Pyrococcus Abyssi
Length = 200
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 587 NGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGG 646
+G + I+ ++R E R + + + P+ +E FGL +EAM G A+ GG
Sbjct: 94 HGNVKVITEMLSR----EFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGG 149
Query: 647 PAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPS 684
+II N ++G + + A ++ E ++D S
Sbjct: 150 LRDIITN-ETGILVKAGDPGELANAILKALELSRSDLS 186
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain
pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain In Complex With Adp
Length = 536
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%)
Query: 602 NGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHI 660
N L I P+ +E GL ++ M G P GG + ++ GK+G+H+
Sbjct: 391 NAPLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHM 449
>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp (Orthorhombic Crystal Form)
pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp-Man (Orthorhombic Crystal Form)
Length = 394
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/108 (19%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 571 QAEMKKMYSLIDQ-YKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTV 629
++ ++++ + + Q K G+ + +N + +++ T+G + E G+
Sbjct: 241 ESTLRRLATDVSQNVKFLGRLEY-QDMINTLAAADIFAMPARTRGGGLD---VEGLGIVY 296
Query: 630 VEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFE 677
+EA CG+P A GG E V +G ++ ++ +E+L++ +
Sbjct: 297 LEAQACGVPVIAGTSGGAPE-TVTPATGLVVEGSDVDKLSELLIELLD 343
>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
Length = 381
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/108 (19%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 571 QAEMKKMYSLIDQ-YKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTV 629
++ ++++ + + Q K G+ + +N + +++ T+G + E G+
Sbjct: 241 ESTLRRLATDVSQNVKFLGRLEY-QDMINTLAAADIFAMPARTRGGGLD---VEGLGIVY 296
Query: 630 VEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFE 677
+EA CG+P A GG E V +G ++ ++ +E+L++ +
Sbjct: 297 LEAQACGVPVIAGTSGGAPE-TVTPATGLVVEGSDVDKLSELLIELLD 343
>pdb|2DE0|X Chain X, Crystal Structure Of Human Alpha 1,6-fucosyltransferase,
Fut8
Length = 526
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 420 ASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAM 470
A L C +A+ + +T +PD+ + +LDD Y+F Q + IA+
Sbjct: 398 ADFLVCTFSSQVCRVAYEIMQTLHPDASANFHSLDDIYYFGGQNAHNQIAI 448
>pdb|1VBG|A Chain A, Pyruvate Phosphate Dikinase From Maize
pdb|1VBH|A Chain A, Pyruvate Phosphate Dikinase With Bound Mg-Pep From Maize
Length = 876
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 496 SHTAFTLPGLYRVVHGIDVFDPKFNIVSPG--ADMSIYFPYTEEKRRLKSFHPEIEELLY 553
S A ++PG+ V + + D V+ G A F Y +R L F + ++
Sbjct: 98 SGAAVSMPGMMDTVLNLGLNDE----VAAGLAAKSGERFAYDSFRRFLDMFGNVVMDIPR 153
Query: 554 SDVENK-EHLKESKDLEEQAEM--KKMYSLIDQYK 585
S E K EH+KESK L+ ++ + L+ QYK
Sbjct: 154 SLFEEKLEHMKESKGLKNDTDLTASDLKELVGQYK 188
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 157 VEFLNRHLSAKLFHDKESMHPLL-EFLRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYL 215
L+R+++ K + ++ S PL+ + VH H + + +L L+ ++ L
Sbjct: 136 CSLLHRNITVKTYFNRTSQDPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGL 195
Query: 216 TTVVPETPFSELALRFQEIGLERGW 240
PE F+E L + GL GW
Sbjct: 196 PVCTPEKDFAEHLLIPRTRGLLSGW 220
>pdb|3F1S|B Chain B, Crystal Structure Of Protein Z Complexed With Protein
Z-Dependent Inhibitor
Length = 283
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 157 VEFLNRHLSAKLFHDKESMHPLL-EFLRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYL 215
L+R+++ K + ++ S PL+ + VH H + + +L L+ ++ L
Sbjct: 95 CSLLHRNITVKTYFNRTSQDPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGL 154
Query: 216 TTVVPETPFSELALRFQEIGLERGWG 241
PE F+E L + GL GW
Sbjct: 155 PVCTPEKDFAEHLLIPRTRGLLSGWA 180
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,579,479
Number of Sequences: 62578
Number of extensions: 936630
Number of successful extensions: 2342
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2313
Number of HSP's gapped (non-prelim): 36
length of query: 700
length of database: 14,973,337
effective HSP length: 106
effective length of query: 594
effective length of database: 8,340,069
effective search space: 4954000986
effective search space used: 4954000986
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)