BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005367
(700 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 93/190 (48%), Gaps = 20/190 (10%)
Query: 318 TEAPADVRGWEMGRRLSLMKNSIKNLPTIPTCPHLLT----LFLNRNPLTTIAGGFFQSM 373
+ PAD + +L L N + +LP+ H LT L+LN N L T+ G F+ +
Sbjct: 33 SNIPADTK------KLDLQSNKLSSLPS--KAFHRLTKLRLLYLNDNKLQTLPAGIFKEL 84
Query: 374 PCLTVLKMSGNETLRQLPMGI-SKLVSLQLLDISYTRVRELPEEL-KALVNLRCLNLDWA 431
L L ++ N+ L+ LP+G+ +LV+L L + +++ LP + +L L L+L +
Sbjct: 85 KNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY- 142
Query: 432 GELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEITFRRFEAY 491
EL +P+ + + L+ LR++ L E ++L LK L++ +R
Sbjct: 143 NELQSLPKGVFDKLTSLKELRLYNNQLKRV---PEGAFDKLTELKTLKLDNNQLKRV-PE 198
Query: 492 QTFLSSQKLR 501
F S +KL+
Sbjct: 199 GAFDSLEKLK 208
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 6/123 (4%)
Query: 333 LSLMKNSIKNLPT--IPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQL 390
L L NS+K+LP L L+L N L ++ G F + LT L +S N+ L+ L
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSL 91
Query: 391 PMGI-SKLVSLQLLDISYTRVRELPEEL-KALVNLRCLNLDWAGELVKVPQQLLSNFSRL 448
P G+ KL L+ L ++ +++ LP+ + L L+ L L + +L VP + + L
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL-YQNQLKSVPDGVFDRLTSL 150
Query: 449 RVL 451
+ +
Sbjct: 151 QYI 153
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 9/124 (7%)
Query: 333 LSLMKNSIKNLPT--IPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQL 390
L L N +++LP +L L L N L ++ G F + LT L ++ N+ L+ L
Sbjct: 90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSL 148
Query: 391 PMGI-SKLVSLQLLDISYTRVRELPEEL-KALVNLRCLNLDWAGELVKVPQQLLSNFSRL 448
P G+ KL +L LD+SY +++ LPE + L L+ L L + +L VP + F RL
Sbjct: 149 PKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL-YQNQLKSVPDGV---FDRL 204
Query: 449 RVLR 452
L+
Sbjct: 205 TSLQ 208
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 338 NSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGIS 395
N+I+ LP P L L L RN L+++ G F + P LT L MS N R
Sbjct: 109 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 168
Query: 396 KLVSLQLLDISYTRV 410
SLQ L +S R+
Sbjct: 169 ATTSLQNLQLSSNRL 183
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 9/98 (9%)
Query: 339 SIKNLPT-IPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGI-SK 396
S+ ++PT IPT +L L+ NR +T + G F + LT L + N+ L LP G+ K
Sbjct: 20 SLASVPTGIPTTTQVLYLYDNR--ITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDK 76
Query: 397 LVSLQLLDISYTRVRELP----EELKALVNLRCLNLDW 430
L L L ++ +++ +P + L++L ++ LN W
Sbjct: 77 LTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPW 114
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 9/98 (9%)
Query: 339 SIKNLPT-IPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGI-SK 396
S+ ++PT IPT +L L+ N+ +T + G F + LT L + N+ L LP G+ K
Sbjct: 28 SLASVPTGIPTTTQVLYLYDNQ--ITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDK 84
Query: 397 LVSLQLLDISYTRVRELP----EELKALVNLRCLNLDW 430
L L L ++ +++ +P + LK+L ++ LN W
Sbjct: 85 LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPW 122
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 9/98 (9%)
Query: 339 SIKNLPT-IPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGI-SK 396
S+ ++PT IPT +L L+ N+ +T + G F + LT L + N+ L LP G+ K
Sbjct: 20 SLASVPTGIPTTTQVLYLYDNQ--ITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDK 76
Query: 397 LVSLQLLDISYTRVRELP----EELKALVNLRCLNLDW 430
L L L ++ +++ +P + LK+L ++ LN W
Sbjct: 77 LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPW 114
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
Query: 355 LFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGI-SKLVSLQLLDISYTRVREL 413
L+L N L + G F S+ LTVL + N+ L LP + +LV L+ L + ++ EL
Sbjct: 69 LYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNKLTEL 127
Query: 414 PEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFA 455
P ++ L +L L LD +L +P S L +F
Sbjct: 128 PRGIERLTHLTHLALD-QNQLKSIPHGAFDRLSSLTHAYLFG 168
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 346 IPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGI-SKLVSLQLLD 404
IPT +L +L+ N +T + G F S+ L L + N+ L LP+G+ L L +LD
Sbjct: 38 IPTNAQIL--YLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLD 94
Query: 405 ISYTRVRELPEEL-KALVNLR 424
+ ++ LP + LV+L+
Sbjct: 95 LGTNQLTVLPSAVFDRLVHLK 115
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 331 RRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLR 388
++L + N+I+ LP P L L L RN L+++ G F + P LT L MS N R
Sbjct: 96 QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 155
Query: 389 QLPMGISKLVSLQLLDISYTRVREL 413
SLQ L +S R+ +
Sbjct: 156 IEDDTFQATTSLQNLQLSSNRLTHV 180
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 17/153 (11%)
Query: 286 KMHDVIRDMALWITCEIEKEKEGFLVYAGSGLTEAPADVRGWEMG-RRLSLMKNSIKNLP 344
K+HD I+ E +L+ G+ L P V + L L++N +++LP
Sbjct: 74 KLHD--------ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP 125
Query: 345 --TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGI-SKLVSLQ 401
+L L+L N L ++ G F + LT L + N+ L+ LP G+ KL L+
Sbjct: 126 DGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQ-LQSLPEGVFDKLTQLK 184
Query: 402 LLDISYTRVRELP----EELKALVNLRCLNLDW 430
L ++ +++ +P + L +L ++ LN W
Sbjct: 185 QLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPW 217
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 352 LLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGI-SKLVSLQLLDISYTRV 410
L TL L N L ++ G F + L L + GN+ L+ LP G+ +L L+ L ++ ++
Sbjct: 85 LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQL 143
Query: 411 RELPE-ELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFA 455
+ +P L NL+ L+L +L VP +L+ + +F
Sbjct: 144 QSIPAGAFDKLTNLQTLSLS-TNQLQSVPHGAFDRLGKLQTITLFG 188
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 328 EMGRRLSLMKNSIKNLPTIPTCPHLLTL---FLNRNPLTTIAGGFFQSMPCLTVLKMSGN 384
E+G L L N + +LP + HL L +L N L ++ G F + L L+++ N
Sbjct: 84 ELGT-LGLANNQLASLP-LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141
Query: 385 ETLRQLPMG-ISKLVSLQLLDISYTRVRELPE 415
+ L+ +P G KL +LQ L +S +++ +P
Sbjct: 142 Q-LQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 352 LLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGI-SKLVSLQLLDISYTRV 410
L TL L N L ++ G F + L L + GN+ L+ LP G+ +L L+ L ++ ++
Sbjct: 85 LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQL 143
Query: 411 RELPE-ELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFA 455
+ +P L NL+ L+L +L VP +L+ + +F
Sbjct: 144 QSIPAGAFDKLTNLQTLSLS-TNQLQSVPHGAFDRLGKLQTITLFG 188
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 328 EMGRRLSLMKNSIKNLPTIPTCPHLLTL---FLNRNPLTTIAGGFFQSMPCLTVLKMSGN 384
E+G L L N + +LP + HL L +L N L ++ G F + L L+++ N
Sbjct: 84 ELGT-LGLANNQLASLP-LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141
Query: 385 ETLRQLPMG-ISKLVSLQLLDISYTRVRELPE 415
+ L+ +P G KL +LQ L +S +++ +P
Sbjct: 142 Q-LQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 80/184 (43%), Gaps = 15/184 (8%)
Query: 350 PHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQLLDISYTR 409
P L L N +T I G F+++ L L + N+ + P + LV L+ L +S +
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 410 VRELPEEL-KALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENV 468
++ELPE++ K L LR E+ KV + + + +++ V+ + L S S EN
Sbjct: 112 LKELPEKMPKTLQELRV----HENEITKVRKSVFNGLNQMIVVELGTNPLKS--SGIENG 165
Query: 469 AEELLGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQ 528
A + G+K L + I Q L L L + ++ +D A L L
Sbjct: 166 AFQ--GMKKLSYIRIADTNITTI-----PQGLPPSLTELHL-DGNKITKVDAASLKGLNN 217
Query: 529 LNTL 532
L L
Sbjct: 218 LAKL 221
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 80/184 (43%), Gaps = 15/184 (8%)
Query: 350 PHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQLLDISYTR 409
P L L N +T I G F+++ L L + N+ + P + LV L+ L +S +
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 410 VRELPEEL-KALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENV 468
++ELPE++ K L LR E+ KV + + + +++ V+ + L S S EN
Sbjct: 112 LKELPEKMPKTLQELRV----HENEITKVRKSVFNGLNQMIVVELGTNPLKS--SGIENG 165
Query: 469 AEELLGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQ 528
A + G+K L + I Q L L L + ++ +D A L L
Sbjct: 166 AFQ--GMKKLSYIRIADTNITTI-----PQGLPPSLTELHL-DGNKITKVDAASLKGLNN 217
Query: 529 LNTL 532
L L
Sbjct: 218 LAKL 221
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 15/137 (10%)
Query: 63 EKAQDIFKTLSKKKFA---LLLDDLWERVDLKKIGVPLPKNSAVVFTTRFVDVCGR-MEA 118
E+A+D + L +K L+LDD+W+ LK ++ TTR V M
Sbjct: 227 EEAKDRLRILMLRKHPRSLLILDDVWDSWVLK----AFDSQCQILLTTRDKSVTDSVMGP 282
Query: 119 RRTFKVEC-LSDEAAWELFREKVGEETIESHHSIPELAQTVAKECGGLPLALITIGRAMA 177
+ VE L E E+ V + + +PE A ++ KEC G PL + IG +
Sbjct: 283 KYVVPVESSLGKEKGLEILSLFVNMKKAD----LPEQAHSIIKECKGSPLVVSLIGALL- 337
Query: 178 YKKTPEEWRYAIEVLRR 194
+ P W Y ++ L+
Sbjct: 338 -RDFPNRWEYYLKQLQN 353
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
Query: 63 EKAQDIFKTLSKKKFA---LLLDDLWERVDLKKIGVPLPKNSAVVFTTRFVDVCGR-MEA 118
E+A+D + L +K L+LDD+W+ LK ++ TTR V M
Sbjct: 221 EEAKDRLRILMLRKHPRSLLILDDVWDSWVLK----AFDSQCQILLTTRDKSVTDSVMGP 276
Query: 119 RRTFKVEC-LSDEAAWELFREKVGEETIESHHSIPELAQTVAKECGGLPLALITIGRAMA 177
+ VE L E E+ V + + +PE A ++ KEC G PL + IG +
Sbjct: 277 KYVVPVESSLGKEKGLEILSLFVNMKKAD----LPEQAHSIIKECKGSPLVVSLIGALL- 331
Query: 178 YKKTPEEWRYAIEVLR 193
+ P W Y ++ L+
Sbjct: 332 -RDFPNRWEYYLKQLQ 346
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 6/135 (4%)
Query: 331 RRLSLMKNSIKNLPT--IPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLR 388
R L L KN IK L + PHL L LN N ++ + G F ++ L L + N L+
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LK 93
Query: 389 QLPMGI-SKLVSLQLLDISYTRVRELPEEL-KALVNLRCLNLDWAGELVKVPQQLLSNFS 446
+P+G+ + L +L LDIS ++ L + + + L NL+ L + +LV + + S +
Sbjct: 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVG-DNDLVYISHRAFSGLN 152
Query: 447 RLRVLRMFATGLISF 461
L L + L S
Sbjct: 153 SLEQLTLEKCNLTSI 167
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 376 LTVLKMSGNETLRQLPMGISKLVSLQLLDISYTRVRELPEELKALVNLR 424
LT L ++GN +L +LP I L +L++LD+S+ R+ LP EL + L+
Sbjct: 249 LTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK 296
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 310 LVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLPT-IPTCPHLLTLFLNRNPLTTIAGG 368
L G+ LTE PA+++ R L L N + +LP + +C L + N +TT+
Sbjct: 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWE 311
Query: 369 FFQSMPCLTVLKMSGNETLRQL 390
F ++ L L + GN +Q
Sbjct: 312 -FGNLCNLQFLGVEGNPLEKQF 332
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 9/149 (6%)
Query: 309 FLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLPTIP---TCPHLLTLFLNRNPLTTI 365
+L + +G+ ++ G E L +++K + + +L+ L ++
Sbjct: 377 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436
Query: 366 AGGFFQSMPCLTVLKMSGNETLRQ-LPMGISKLVSLQLLDISYTRVREL-PEELKALVNL 423
G F + L VLKM+GN LP ++L +L LD+S ++ +L P +L +L
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496
Query: 424 RCLNLDWAGELVKVPQQLLSNFSRLRVLR 452
+ LN+ + +L VP + F RL L+
Sbjct: 497 QVLNM-ASNQLKSVPDGI---FDRLTSLQ 521
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 11/139 (7%)
Query: 331 RRLSLMKNSIKNLPTIP--TCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLR 388
+ L L N +++L + + P L L L+R + TI G +QS+ L+ L ++GN ++
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQ 89
Query: 389 QLPMG-ISKLVSLQLLDISYTRVRELPE-ELKALVNLRCLNLDWAGELV---KVPQQLLS 443
L +G S L SLQ L T + L + L L+ LN+ A L+ K+P + S
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV--AHNLIQSFKLP-EYFS 146
Query: 444 NFSRLRVLRMFATGLISFY 462
N + L L + + + S Y
Sbjct: 147 NLTNLEHLDLSSNKIQSIY 165
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 19/178 (10%)
Query: 371 QSMPCLTVLKMSGNETLRQLPMGISKLVSLQLLDI-SYTRVRELPEEL---------KAL 420
Q L L ++ N LR LP I+ L L+ L I + + ELPE L + L
Sbjct: 124 QQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182
Query: 421 VNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISF-YSWHENVAEELLGLKYLE 479
VNL+ L L+W G + +P ++N L+ L++ + L + + H E L L+
Sbjct: 183 VNLQSLRLEWTG-IRSLPAS-IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCT 240
Query: 480 VLEITFRRFEAYQTFLSSQKLRSCTQALFL----HEFDREESIDVAGLADLEQLNTLI 533
L + + L L+ C+ L L H + E +D+ G +L +L +LI
Sbjct: 241 ALR-NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 10/84 (11%)
Query: 354 TLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISK---------LVSLQLLD 404
TL L RNPL + S+ L L + L +LP ++ LV+LQ L
Sbjct: 131 TLTLARNPLRALPASIA-SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR 189
Query: 405 ISYTRVRELPEELKALVNLRCLNL 428
+ +T +R LP + L NL+ L +
Sbjct: 190 LEWTGIRSLPASIANLQNLKSLKI 213
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Query: 316 GLTEAPADVRGWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSM 373
GLT P + RL L N +++LP L L L++N + ++ G F +
Sbjct: 18 GLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKL 75
Query: 374 PCLTVLKMSGNETLRQLPMGI-SKLVSLQLLDISYTRVRELPEEL 417
LT+L + N+ L+ LP G+ KL L+ L + +++ +P+ +
Sbjct: 76 TKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQLKSVPDGI 119
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 309 FLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLPTIP---TCPHLLTLFLNRNPLTTI 365
+L + +G+ ++ G E L +++K + + +L+ L ++
Sbjct: 401 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 460
Query: 366 AGGFFQSMPCLTVLKMSGNETLRQ-LPMGISKLVSLQLLDISYTRVREL-PEELKALVNL 423
G F + L VLKM+GN LP ++L +L LD+S ++ +L P +L +L
Sbjct: 461 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 520
Query: 424 RCLNL 428
+ LN+
Sbjct: 521 QVLNM 525
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 11/139 (7%)
Query: 331 RRLSLMKNSIKNLPTIP--TCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLR 388
+ L L N +++L + + P L L L+R + TI G +QS+ L+ L ++GN ++
Sbjct: 55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQ 113
Query: 389 QLPMG-ISKLVSLQLLDISYTRVRELPE-ELKALVNLRCLNLDWAGELV---KVPQQLLS 443
L +G S L SLQ L T + L + L L+ LN+ A L+ K+P + S
Sbjct: 114 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV--AHNLIQSFKLP-EYFS 170
Query: 444 NFSRLRVLRMFATGLISFY 462
N + L L + + + S Y
Sbjct: 171 NLTNLEHLDLSSNKIQSIY 189
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 15/137 (10%)
Query: 63 EKAQDIFKTLSKKKFA---LLLDDLWERVDLKKIGVPLPKNSAVVFTTRFVDVCGR-MEA 118
E+A+D + L +K L+LDD+W+ LK ++ TTR V M
Sbjct: 221 EEAKDRLRVLMLRKHPRSLLILDDVWDPWVLK----AFDNQCQILLTTRDKSVTDSVMGP 276
Query: 119 RRTFKVEC-LSDEAAWELFREKVGEETIESHHSIPELAQTVAKECGGLPLALITIGRAMA 177
+ VE L E E+ V + +P A ++ KEC G PL + IG +
Sbjct: 277 KHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALL- 331
Query: 178 YKKTPEEWRYAIEVLRR 194
+ P W Y + L+
Sbjct: 332 -RDFPNRWAYYLRQLQN 347
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 309 FLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLPTIP---TCPHLLTLFLNRNPLTTI 365
+L + +G+ ++ G E L +++K + + +L+ L ++
Sbjct: 377 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436
Query: 366 AGGFFQSMPCLTVLKMSGNETLRQ-LPMGISKLVSLQLLDISYTRVREL-PEELKALVNL 423
G F + L VLKM+GN LP ++L +L LD+S ++ +L P +L +L
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496
Query: 424 RCLNL 428
+ LN+
Sbjct: 497 QVLNM 501
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 11/139 (7%)
Query: 331 RRLSLMKNSIKNLPTIP--TCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLR 388
+ L L N +++L + + P L L L+R + TI G +QS+ L+ L ++GN ++
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQ 89
Query: 389 QLPMG-ISKLVSLQLLDISYTRVRELPE-ELKALVNLRCLNLDWAGELV---KVPQQLLS 443
L +G S L SLQ L T + L + L L+ LN+ A L+ K+P + S
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV--AHNLIQSFKLP-EYFS 146
Query: 444 NFSRLRVLRMFATGLISFY 462
N + L L + + + S Y
Sbjct: 147 NLTNLEHLDLSSNKIQSIY 165
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 22/115 (19%)
Query: 331 RRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTT------------IAGGFFQSMPCLTV 378
+ LS+ N + +LPT+P+ L L+ N LT+ ++G S+P L
Sbjct: 184 QELSVSDNQLASLPTLPS--ELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPS 241
Query: 379 ----LKMSGNETLRQLPMGISKLVSLQLLDISYTRVRELPEELKALVNLRCLNLD 429
L +SGN L LPM S L+SL + TR LPE L L + +NL+
Sbjct: 242 ELKELMVSGNR-LTSLPMLPSGLLSLSVYRNQLTR---LPESLIHLSSETTVNLE 292
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 5/119 (4%)
Query: 353 LTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQ-LLDISYTRVR 411
+ L+LN+N + I F L L +S N L +LP + S +LDIS TR+
Sbjct: 157 VILWLNKNGIQEIHNSAFNGTQ-LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215
Query: 412 ELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAE 470
LP L NL+ L L K+P L + + + + +F +W ++E
Sbjct: 216 SLPS--YGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPSHCCAFANWRRQISE 271
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 5/126 (3%)
Query: 309 FLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLPTIP---TCPHLLTLFLNRNPLTTI 365
+L + +G+ ++ G E L +++K + + +L+ L ++
Sbjct: 82 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 141
Query: 366 AGGFFQSMPCLTVLKMSGNETLRQ-LPMGISKLVSLQLLDISYTRVREL-PEELKALVNL 423
G F + L VLKM+GN LP ++L +L LD+S ++ +L P +L +L
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201
Query: 424 RCLNLD 429
+ LN+
Sbjct: 202 QVLNMS 207
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 17/138 (12%)
Query: 333 LSLMKNSIKNLPTI-PTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLP 391
L L N +++LP + T P L L ++ N LT++ G + + L L + GNE L+ LP
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLP 140
Query: 392 MG-ISKLVSLQLLDISYTRVRELPEE-LKALVNLRCLNLDWAGELVKVPQQLLSNFSRLR 449
G ++ L+ L ++ ++ ELP L L NL L L L +P+
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQ-ENSLYTIPK---------- 189
Query: 450 VLRMFATGLISFYSWHEN 467
F + L+ F H N
Sbjct: 190 --GFFGSHLLPFAFLHGN 205
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 17/138 (12%)
Query: 333 LSLMKNSIKNLPTI-PTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLP 391
L L N +++LP + T P L L ++ N LT++ G + + L L + GNE L+ LP
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLP 140
Query: 392 MG-ISKLVSLQLLDISYTRVRELPEE-LKALVNLRCLNLDWAGELVKVPQQLLSNFSRLR 449
G ++ L+ L ++ ++ ELP L L NL L L L +P+
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQ-ENSLYTIPK---------- 189
Query: 450 VLRMFATGLISFYSWHEN 467
F + L+ F H N
Sbjct: 190 --GFFGSHLLPFAFLHGN 205
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 33.5 bits (75), Expect = 0.45, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 314 GSGLTEAPADVRGWEMGRRLSLMKNSIKNLPTIPTCPH--LLTLFLNRNPLTTIAGGFFQ 371
G GLTE P ++ E + L +N+IK +P P+ L + L+ N ++ +A FQ
Sbjct: 20 GKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ 77
Query: 372 SMPCLTVLKMSGNETLRQLP 391
+ L L + GN+ + +LP
Sbjct: 78 GLRSLNSLVLYGNK-ITELP 96
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 33.5 bits (75), Expect = 0.46, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 314 GSGLTEAPADVRGWEMGRRLSLMKNSIKNLPTIPTCPH--LLTLFLNRNPLTTIAGGFFQ 371
G GLTE P ++ E + L +N+IK +P P+ L + L+ N ++ +A FQ
Sbjct: 20 GKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ 77
Query: 372 SMPCLTVLKMSGNETLRQLP 391
+ L L + GN+ + +LP
Sbjct: 78 GLRSLNSLVLYGNK-ITELP 96
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 17/138 (12%)
Query: 333 LSLMKNSIKNLPTI-PTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLP 391
L L N +++LP + T P L L ++ N LT++ G + + L L + GNE L+ LP
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLP 140
Query: 392 MG-ISKLVSLQLLDISYTRVRELPEE-LKALVNLRCLNLDWAGELVKVPQQLLSNFSRLR 449
G ++ L+ L ++ + ELP L L NL L L L +P+
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ-ENSLYTIPKG--------- 190
Query: 450 VLRMFATGLISFYSWHEN 467
F + L+ F H N
Sbjct: 191 ---FFGSHLLPFAFLHGN 205
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 350 PHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGN---ETLRQLPMGISKLVSLQLLDIS 406
PHL+ L L RN LT I F+ + L++ N E ++ +G+ +L +L L D
Sbjct: 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ 113
Query: 407 YTRVRELPEELKALVNLRCLNL 428
+ V +P + L +L LNL
Sbjct: 114 ISCV--MPGSFEHLNSLTSLNL 133
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 17/138 (12%)
Query: 333 LSLMKNSIKNLPTI-PTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLP 391
L L N +++LP + T P L L ++ N LT++ G + + L L + GNE L+ LP
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLP 140
Query: 392 MG-ISKLVSLQLLDISYTRVRELPEE-LKALVNLRCLNLDWAGELVKVPQQLLSNFSRLR 449
G ++ L+ L ++ + ELP L L NL L L L +P+
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ-ENSLYTIPKG--------- 190
Query: 450 VLRMFATGLISFYSWHEN 467
F + L+ F H N
Sbjct: 191 ---FFGSHLLPFAFLHGN 205
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 56/137 (40%), Gaps = 15/137 (10%)
Query: 63 EKAQDIFKTLSKKKFA---LLLDDLWERVDLKKIGVPLPKNSAVVFTTRFVDVCGR-MEA 118
E+A+D + L +K L+LDD+W+ LK ++ TT V M
Sbjct: 228 EEAKDRLRVLMLRKHPRSLLILDDVWDPWVLK----AFDNQCQILLTTSDKSVTDSVMGP 283
Query: 119 RRTFKVEC-LSDEAAWELFREKVGEETIESHHSIPELAQTVAKECGGLPLALITIGRAMA 177
+ VE L E E+ V + +P A ++ KEC G PL + IG +
Sbjct: 284 KHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALL- 338
Query: 178 YKKTPEEWRYAIEVLRR 194
+ P W Y + L+
Sbjct: 339 -RDFPNRWAYYLRQLQN 354
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 17/138 (12%)
Query: 333 LSLMKNSIKNLPTI-PTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLP 391
L L N +++LP + T P L L ++ N LT++ G + + L L + GNE L+ LP
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLP 140
Query: 392 MG-ISKLVSLQLLDISYTRVRELPEE-LKALVNLRCLNLDWAGELVKVPQQLLSNFSRLR 449
G ++ L+ L ++ + ELP L L NL L L L +P+
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ-ENSLYTIPKG--------- 190
Query: 450 VLRMFATGLISFYSWHEN 467
F + L+ F H N
Sbjct: 191 ---FFGSHLLPFAFLHGN 205
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 17/138 (12%)
Query: 333 LSLMKNSIKNLPTI-PTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLP 391
L L N +++LP + T P L L ++ N LT++ G + + L L + GNE L+ LP
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLP 140
Query: 392 MG-ISKLVSLQLLDISYTRVRELPEE-LKALVNLRCLNLDWAGELVKVPQQLLSNFSRLR 449
G ++ L+ L ++ + ELP L L NL L L L +P+
Sbjct: 141 PGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQ-ENSLYTIPKG--------- 190
Query: 450 VLRMFATGLISFYSWHEN 467
F + L+ F H N
Sbjct: 191 ---FFGSHLLPFAFLHGN 205
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 17/138 (12%)
Query: 333 LSLMKNSIKNLPTI-PTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLP 391
L L N +++LP + T P L L ++ N LT++ G + + L L + GNE L+ LP
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLP 140
Query: 392 MG-ISKLVSLQLLDISYTRVRELPEE-LKALVNLRCLNLDWAGELVKVPQQLLSNFSRLR 449
G ++ L+ L ++ + ELP L L NL L L L +P+
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ-ENSLYTIPKG--------- 190
Query: 450 VLRMFATGLISFYSWHEN 467
F + L+ F H N
Sbjct: 191 ---FFGSHLLPFAFLHGN 205
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 9/118 (7%)
Query: 350 PHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMG-ISKLVSLQLLDISYT 408
P L L L+R + TI G +QS+ L+ L ++GN ++ L +G S L SLQ L T
Sbjct: 54 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVET 112
Query: 409 RVRELPE-ELKALVNLRCLNLDWAGELV---KVPQQLLSNFSRLRVLRMFATGLISFY 462
+ L + L L+ LN+ A L+ K+P + SN + L L + + + S Y
Sbjct: 113 NLASLENFPIGHLKTLKELNV--AHNLIQSFKLP-EYFSNLTNLEHLDLSSNKIQSIY 167
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 17/138 (12%)
Query: 333 LSLMKNSIKNLPTI-PTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLP 391
L L N +++LP + T P L L ++ N LT++ G + + L L + GNE L+ LP
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLP 140
Query: 392 MG-ISKLVSLQLLDISYTRVRELPEE-LKALVNLRCLNLDWAGELVKVPQQLLSNFSRLR 449
G ++ L+ L ++ ++ ELP L L NL L L L +P+
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQ-ENSLYTIPK---------- 189
Query: 450 VLRMFATGLISFYSWHEN 467
F + L+ F H N
Sbjct: 190 --GFFGSHLLPFAFLHGN 205
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 9/118 (7%)
Query: 350 PHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMG-ISKLVSLQLLDISYT 408
P L L L+R + TI G +QS+ L+ L ++GN ++ L +G S L SLQ L T
Sbjct: 53 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVET 111
Query: 409 RVRELPE-ELKALVNLRCLNLDWAGELV---KVPQQLLSNFSRLRVLRMFATGLISFY 462
+ L + L L+ LN+ A L+ K+P + SN + L L + + + S Y
Sbjct: 112 NLASLENFPIGHLKTLKELNV--AHNLIQSFKLP-EYFSNLTNLEHLDLSSNKIQSIY 166
>pdb|3EMU|A Chain A, Crystal Structure Of A Leucine Rich Repeat And Phosphatase
Domain Containing Protein From Entamoeba Histolytica
Length = 161
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 277 LEEVEEDQVKMHDVIRDMALWITCEIEKEKEGFLVYAGSGLTEAPADVRGWEM-GRRLSL 335
L+ V E+ +++D I + +I I++ KEG L+ +G+G+ +APA V + M +RLS
Sbjct: 59 LDIVSEEGHQLYDSIPNAIKFIIRSIQR-KEGVLIISGTGVNKAPAIVIAFLMYYQRLSF 117
Query: 336 MK--NSIKNL 343
+ N ++ L
Sbjct: 118 INAFNKVQGL 127
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 9/118 (7%)
Query: 350 PHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMG-ISKLVSLQLLDISYT 408
P L L L+R + TI G +QS+ L+ L ++GN ++ L +G S L SLQ L T
Sbjct: 53 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVET 111
Query: 409 RVRELPE-ELKALVNLRCLNLDWAGELV---KVPQQLLSNFSRLRVLRMFATGLISFY 462
+ L + L L+ LN+ A L+ K+P + SN + L L + + + S Y
Sbjct: 112 NLASLENFPIGHLKTLKELNV--AHNLIQSFKLP-EYFSNLTNLEHLDLSSNKIQSIY 166
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 17/138 (12%)
Query: 333 LSLMKNSIKNLPTI-PTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLP 391
L L N +++LP + T P L L ++ N LT++ G + + L L + GNE L+ LP
Sbjct: 83 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLP 141
Query: 392 MG-ISKLVSLQLLDISYTRVRELPEE-LKALVNLRCLNLDWAGELVKVPQQLLSNFSRLR 449
G ++ L+ L ++ + ELP L L NL L L L +P+
Sbjct: 142 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ-ENSLYTIPKG--------- 191
Query: 450 VLRMFATGLISFYSWHEN 467
F + L+ F H N
Sbjct: 192 ---FFGSHLLPFAFLHGN 206
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 17/138 (12%)
Query: 333 LSLMKNSIKNLPTI-PTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLP 391
L L N +++LP + T P L L ++ N LT++ G + + L L + GNE L+ LP
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLP 140
Query: 392 MG-ISKLVSLQLLDISYTRVRELPEE-LKALVNLRCLNLDWAGELVKVPQQLLSNFSRLR 449
G ++ L+ L ++ ++ ELP L L NL L L L +P+
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQ-ENSLYTIPKG--------- 190
Query: 450 VLRMFATGLISFYSWHEN 467
F + L+ F H N
Sbjct: 191 ---FFGSHLLPFAFLHGN 205
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 9/118 (7%)
Query: 350 PHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMG-ISKLVSLQLLDISYT 408
P L L L+R + TI G +QS+ L+ L ++GN ++ L +G S L SLQ L T
Sbjct: 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVET 110
Query: 409 RVRELPE-ELKALVNLRCLNLDWAGELV---KVPQQLLSNFSRLRVLRMFATGLISFY 462
+ L + L L+ LN+ A L+ K+P + SN + L L + + + S Y
Sbjct: 111 NLASLENFPIGHLKTLKELNV--AHNLIQSFKLP-EYFSNLTNLEHLDLSSNKIQSIY 165
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 353 LTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQ-LLDISYTRVR 411
+ L+LN+N + I F L L +S N L +LP + S +LDIS TR+
Sbjct: 157 VILWLNKNGIQEIHNCAFNGTQ-LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215
Query: 412 ELPEELKALVNLRCLNLDWAGELVKVP 438
LP L NL+ L L K+P
Sbjct: 216 SLPS--YGLENLKKLRARSTYNLKKLP 240
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 9/118 (7%)
Query: 350 PHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMG-ISKLVSLQLLDISYT 408
P L L L+R + TI G +QS+ L+ L ++GN ++ L +G S L SLQ L T
Sbjct: 54 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVALET 112
Query: 409 RVRELPE-ELKALVNLRCLNLDWAGELV---KVPQQLLSNFSRLRVLRMFATGLISFY 462
+ L + L L+ LN+ A L+ K+P + SN + L L + + + S Y
Sbjct: 113 NLASLENFPIGHLKTLKELNV--AHNLIQSFKLP-EYFSNLTNLEHLDLSSNKIQSIY 167
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 6/108 (5%)
Query: 338 NSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKL 397
N I ++ + P L +L+L N +T I + L L + N+ R +P+ ++L
Sbjct: 120 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQIRRIVPL--ARL 175
Query: 398 VSLQLLDISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNF 445
LQ L +S + +L L+ L NL L L ++ E + P SN
Sbjct: 176 TKLQNLYLSKNHISDL-RALRGLKNLDVLEL-FSQEALNKPINHQSNL 221
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 331 RRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLR 388
+RL L N I L +L L+ N N LT I G F + LT L ++ N L+
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH-LK 94
Query: 389 QLPMG 393
+P G
Sbjct: 95 SIPRG 99
>pdb|4H0W|A Chain A, Bismuth Bound Human Serum Transferrin
Length = 679
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 113 CGRMEARRTFKVECLSDEAAWELFREKVGEETIESHHSIPELAQTVAKECGGLPLALITI 172
C K+EC+S E + + + E S+ +A +CG +P+
Sbjct: 355 CDEWSVNSVGKIECVSAETTEDCIAKIMNGEA--DAMSLDGGFVYIAGKCGLVPVLAENY 412
Query: 173 GRAMAYKKTPEEWRYAIEVLRRSASEF 199
++ + TPE +AI V+++SAS+
Sbjct: 413 NKSDNCEDTPEAGYFAIAVVKKSASDL 439
>pdb|3V83|A Chain A, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|B Chain B, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|C Chain C, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|D Chain D, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|E Chain E, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|F Chain F, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V8X|B Chain B, The Crystal Structure Of Transferrin Binding Protein A
(Tbpa) From Neisserial Meningitidis Serogroup B In
Complex With Full Length Human Transferrin
Length = 698
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 113 CGRMEARRTFKVECLSDEAAWELFREKVGEETIESHHSIPELAQTVAKECGGLPLALITI 172
C K+EC+S E + + + E S+ +A +CG +P+
Sbjct: 374 CDEWSVNSVGKIECVSAETTEDCIAKIMNGEA--DAMSLDGGFVYIAGKCGLVPVLAENY 431
Query: 173 GRAMAYKKTPEEWRYAIEVLRRSASEF 199
++ + TPE +A+ V+++SAS+
Sbjct: 432 NKSDNCEDTPEAGYFAVAVVKKSASDL 458
>pdb|3QYT|A Chain A, Diferric Bound Human Serum Transferrin
Length = 679
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 113 CGRMEARRTFKVECLSDEAAWELFREKVGEETIESHHSIPELAQTVAKECGGLPLALITI 172
C K+EC+S E + + + E S+ +A +CG +P+
Sbjct: 355 CDEWSVNSVGKIECVSAETTEDCIAKIMNGEA--DAMSLDGGFVYIAGKCGLVPVLAENY 412
Query: 173 GRAMAYKKTPEEWRYAIEVLRRSASEF 199
++ + TPE +A+ V+++SAS+
Sbjct: 413 NKSDNCEDTPEAGYFAVAVVKKSASDL 439
>pdb|3V89|B Chain B, The Crystal Structure Of Transferrin Binding Protein A
(Tbpa) From Neisseria Meningitidis Serogroup B In
Complex With The C-Lobe Of Human Transferrin
Length = 343
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 113 CGRMEARRTFKVECLSDEAAWELFREKVGEETIESHHSIPELAQTVAKECGGLPLALITI 172
C K+EC+S E + + + E S+ +A +CG +P+
Sbjct: 19 CDEWSVNSVGKIECVSAETTEDCIAKIMNGEA--DAMSLDGGFVYIAGKCGLVPVLAENY 76
Query: 173 GRAMAYKKTPEEWRYAIEVLRRSASEF 199
++ + TPE +A+ V+++SAS+
Sbjct: 77 NKSDNCEDTPEAGYFAVAVVKKSASDL 103
>pdb|2HAV|A Chain A, Apo-Human Serum Transferrin (Glycosylated)
pdb|2HAV|B Chain B, Apo-Human Serum Transferrin (Glycosylated)
Length = 676
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 113 CGRMEARRTFKVECLSDEAAWELFREKVGEETIESHHSIPELAQTVAKECGGLPLALITI 172
C K+EC+S E + + + E S+ +A +CG +P+
Sbjct: 352 CDEWSVNSVGKIECVSAETTEDCIAKIMNGEA--DAMSLDGGFVYIAGKCGLVPVLAENY 409
Query: 173 GRAMAYKKTPEEWRYAIEVLRRSASEF 199
++ + TPE +A+ V+++SAS+
Sbjct: 410 NKSDNCEDTPEAGYFAVAVVKKSASDL 436
>pdb|3SKP|A Chain A, The Structure Of Apo-Human Transferrin C-Lobe With Bound
Sulfate Ions
Length = 342
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 113 CGRMEARRTFKVECLSDEAAWELFREKVGEETIESHHSIPELAQTVAKECGGLPLALITI 172
C K+EC+S E + + + E S+ +A +CG +P+
Sbjct: 18 CDEWSVNSVGKIECVSAETTEDCIAKIMNGEA--DAMSLDGGFVYIAGKCGLVPVLAENY 75
Query: 173 GRAMAYKKTPEEWRYAIEVLRRSASEF 199
++ + TPE +A+ V+++SAS+
Sbjct: 76 NKSDNCEDTPEAGYFAVAVVKKSASDL 102
>pdb|3VE1|B Chain B, The 2.9 Angstrom Crystal Structure Of Transferrin Binding
Protein B (Tbpb) From Serogroup B M982 Neisseria
Meningitidis In Complex With Human Transferrin
pdb|3VE1|D Chain D, The 2.9 Angstrom Crystal Structure Of Transferrin Binding
Protein B (Tbpb) From Serogroup B M982 Neisseria
Meningitidis In Complex With Human Transferrin
Length = 679
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 113 CGRMEARRTFKVECLSDEAAWELFREKVGEETIESHHSIPELAQTVAKECGGLPLALITI 172
C K+EC+S E + + + E S+ +A +CG +P+
Sbjct: 355 CDEWSVNSVGKIECVSAETTEDCIAKIMNGEA--DAMSLDGGFVYIAGKCGLVPVLAENY 412
Query: 173 GRAMAYKKTPEEWRYAIEVLRRSASEF 199
++ + TPE +A+ V+++SAS+
Sbjct: 413 DKSDNCEDTPEAGYFAVAVVKKSASDL 439
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Query: 344 PTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQLL 403
PT ++ L ++ N L+ SMP L +L + N+ +P + L L +L
Sbjct: 623 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 682
Query: 404 DISYTRV-RELPEELKALVNLRCLNLDWAGELVKVPQ 439
D+S ++ +P+ + AL L ++L +P+
Sbjct: 683 DLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 376 LTVLKMSGNETLRQLPMGISKLVSLQLLDISYTRVREL-PEELKALVNLRCLNLDWAGEL 434
+TVL ++ N+ R P ++ L +LD + + +L PE + L L+ LNL EL
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQ-HNEL 85
Query: 435 VKVPQQ 440
++ Q
Sbjct: 86 SQISDQ 91
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 372 SMPCLTVLKMSGNETLRQLPMGISKLVSLQLLDISYTRV-RELPEELKALVNLRCLNL 428
SMP L +L + N+ +P + L L +LD+S ++ +P+ + AL L ++L
Sbjct: 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711
>pdb|1KHB|A Chain A, Pepck Complex With Nonhydrolyzable Gtp Analog, Native Data
pdb|1KHF|A Chain A, Pepck Complex With Pep
pdb|1KHG|A Chain A, Pepck
pdb|1M51|A Chain A, Pepck Complex With A Gtp-Competitive Inhibitor
pdb|1NHX|A Chain A, Pepck Complex With A Gtp-Competitive Inhibitor
pdb|2GMV|A Chain A, Pepck Complex With A Gtp-Competitive Inhibitor
pdb|2GMV|B Chain B, Pepck Complex With A Gtp-Competitive Inhibitor
Length = 625
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 12/77 (15%)
Query: 72 LSKKKFALLL------DDLWERVDLKKIGVPLPKNSAVVFTTRFVDVCGRME------AR 119
L KK FAL + ++ W + +G+ P+ F CG+ +
Sbjct: 244 LGKKCFALRMASRLAKEEGWLAEHMLVLGITNPEGEKKYLAAAFPSACGKTNLAMMNPSL 303
Query: 120 RTFKVECLSDEAAWELF 136
+KVEC+ D+ AW F
Sbjct: 304 PGWKVECVGDDIAWMKF 320
>pdb|3S9L|C Chain C, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 2
pdb|3S9L|D Chain D, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 2
pdb|3S9M|C Chain C, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 1
pdb|3S9M|D Chain D, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 1
pdb|3S9N|C Chain C, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Room Temperature
pdb|3S9N|D Chain D, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Room Temperature
Length = 693
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 113 CGRMEARRTFKVECLSDEAAWELFREKVGEETIESHHSIPELAQTVAKECGGLPLALITI 172
C K+EC+S E + + + E S+ +A +CG +P+
Sbjct: 369 CDEWSVNSVGKIECVSAETTEDCIAKIMNGEA--DAMSLDGGFVYIAGKCGLVPVLAENY 426
Query: 173 GRAMAYKKTPEEWRYAIEVLRRSASEF 199
++ + TPE +A+ V+++SAS+
Sbjct: 427 DKSDNCEDTPEAGFFAVAVVKKSASDL 453
>pdb|2HAU|A Chain A, Apo-Human Serum Transferrin (Non-Glycosylated)
pdb|2HAU|B Chain B, Apo-Human Serum Transferrin (Non-Glycosylated)
Length = 676
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 113 CGRMEARRTFKVECLSDEAAWELFREKVGEETIESHHSIPELAQTVAKECGGLPLALITI 172
C K+EC+S E + + E S+ +A +CG +P+
Sbjct: 352 CDEWSVNSVGKIECVSAETTEDCIAKIXNGEA--DAXSLDGGFVYIAGKCGLVPVLAENY 409
Query: 173 GRAMAYKKTPEEWRYAIEVLRRSASEF 199
++ + TPE +A+ V+++SAS+
Sbjct: 410 DKSDNCEDTPEAGYFAVAVVKKSASDL 436
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,901,493
Number of Sequences: 62578
Number of extensions: 791430
Number of successful extensions: 1949
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 1863
Number of HSP's gapped (non-prelim): 111
length of query: 700
length of database: 14,973,337
effective HSP length: 106
effective length of query: 594
effective length of database: 8,340,069
effective search space: 4954000986
effective search space used: 4954000986
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)