Query 005367
Match_columns 700
No_of_seqs 250 out of 3097
Neff 10.0
Searched_HMMs 46136
Date Thu Mar 28 22:20:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005367.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005367hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 8.1E-76 1.8E-80 656.2 37.7 676 1-693 187-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.5E-56 3.2E-61 529.8 44.9 604 1-664 215-912 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 3.4E-39 7.5E-44 328.4 15.1 254 1-256 27-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 1E-22 2.2E-27 242.3 16.4 324 308-656 96-439 (968)
5 PLN00113 leucine-rich repeat r 99.9 1.9E-22 4.2E-27 239.9 15.5 320 310-662 145-469 (968)
6 PLN03210 Resistant to P. syrin 99.8 1.8E-20 3.9E-25 223.0 17.6 280 375-686 590-913 (1153)
7 KOG0444 Cytoskeletal regulator 99.8 4.9E-23 1.1E-27 209.6 -4.6 326 307-667 34-384 (1255)
8 KOG4194 Membrane glycoprotein 99.8 2.8E-21 6E-26 195.8 4.6 314 309-656 106-427 (873)
9 KOG4194 Membrane glycoprotein 99.8 1.9E-21 4E-26 197.0 3.3 350 307-700 80-439 (873)
10 KOG0444 Cytoskeletal regulator 99.8 3.4E-20 7.3E-25 189.2 -1.8 298 317-652 92-393 (1255)
11 KOG0472 Leucine-rich repeat pr 99.7 1.3E-19 2.8E-24 176.0 -2.4 317 311-656 189-539 (565)
12 KOG0472 Leucine-rich repeat pr 99.7 1.5E-19 3.2E-24 175.6 -8.1 173 310-493 119-292 (565)
13 PRK15387 E3 ubiquitin-protein 99.6 2.3E-14 4.9E-19 158.8 15.5 266 294-632 190-456 (788)
14 KOG0618 Serine/threonine phosp 99.6 2.8E-16 6.1E-21 168.4 -1.8 206 422-657 242-488 (1081)
15 KOG0617 Ras suppressor protein 99.5 2.9E-16 6.4E-21 135.3 -4.4 159 323-492 28-189 (264)
16 KOG0617 Ras suppressor protein 99.5 3.5E-15 7.5E-20 128.7 -2.3 148 310-460 38-187 (264)
17 KOG4237 Extracellular matrix p 99.4 1.2E-14 2.6E-19 141.7 -1.7 291 308-629 49-354 (498)
18 KOG0618 Serine/threonine phosp 99.4 2.3E-14 5E-19 154.0 -1.2 229 329-600 220-467 (1081)
19 PRK15370 E3 ubiquitin-protein 99.4 4.5E-13 9.8E-18 149.6 8.9 161 307-491 180-340 (754)
20 PRK15370 E3 ubiquitin-protein 99.3 2.6E-12 5.7E-17 143.5 10.3 219 329-594 179-398 (754)
21 PRK15387 E3 ubiquitin-protein 99.3 8.4E-12 1.8E-16 138.6 11.4 232 307-595 224-456 (788)
22 KOG4658 Apoptotic ATPase [Sign 99.3 9.5E-12 2.1E-16 141.2 10.9 324 307-666 525-868 (889)
23 PRK04841 transcriptional regul 99.2 6.8E-10 1.5E-14 132.0 22.2 260 1-299 40-332 (903)
24 KOG4341 F-box protein containi 99.2 1.7E-12 3.8E-17 127.9 -2.7 294 350-663 138-444 (483)
25 KOG4341 F-box protein containi 99.2 1.5E-12 3.2E-17 128.4 -3.4 267 347-637 161-442 (483)
26 cd00116 LRR_RI Leucine-rich re 99.1 1.5E-11 3.2E-16 127.4 2.6 138 349-489 22-178 (319)
27 KOG4237 Extracellular matrix p 99.1 2.4E-12 5.3E-17 125.8 -3.4 279 339-654 57-355 (498)
28 cd00116 LRR_RI Leucine-rich re 99.1 3.5E-11 7.5E-16 124.6 1.9 235 348-593 49-316 (319)
29 PF14580 LRR_9: Leucine-rich r 99.0 3E-10 6.5E-15 103.4 6.0 140 337-484 6-148 (175)
30 COG2909 MalT ATP-dependent tra 99.0 1E-08 2.2E-13 111.0 17.8 266 1-301 45-340 (894)
31 KOG3207 Beta-tubulin folding c 99.0 1.3E-10 2.7E-15 115.6 1.4 210 347-593 118-335 (505)
32 PF14580 LRR_9: Leucine-rich r 98.9 8.6E-10 1.9E-14 100.4 5.1 129 323-454 14-148 (175)
33 KOG0532 Leucine-rich repeat (L 98.9 5.3E-11 1.1E-15 121.9 -4.8 168 310-490 80-248 (722)
34 TIGR03015 pepcterm_ATPase puta 98.9 3.4E-07 7.3E-12 92.1 21.6 168 1-176 51-242 (269)
35 KOG0532 Leucine-rich repeat (L 98.9 1.6E-10 3.6E-15 118.4 -2.6 144 312-460 105-248 (722)
36 KOG2120 SCF ubiquitin ligase, 98.8 1.3E-10 2.8E-15 109.7 -4.0 162 398-597 185-351 (419)
37 KOG3207 Beta-tubulin folding c 98.8 3.5E-10 7.5E-15 112.6 -2.3 163 322-491 115-286 (505)
38 PF05729 NACHT: NACHT domain 98.8 4.8E-08 1E-12 90.3 12.1 133 1-140 8-163 (166)
39 KOG1259 Nischarin, modulator o 98.8 4.7E-09 1E-13 99.4 4.1 131 370-513 280-410 (490)
40 PRK00411 cdc6 cell division co 98.7 1.3E-06 2.8E-11 93.2 21.1 262 1-280 63-358 (394)
41 KOG2120 SCF ubiquitin ligase, 98.7 1.2E-09 2.7E-14 103.3 -2.4 107 375-487 186-297 (419)
42 KOG1259 Nischarin, modulator o 98.6 5.7E-09 1.2E-13 98.8 -0.1 143 326-473 282-426 (490)
43 PRK06893 DNA replication initi 98.6 2.1E-07 4.6E-12 90.4 10.3 143 1-176 47-207 (229)
44 TIGR00635 ruvB Holliday juncti 98.6 5.8E-07 1.3E-11 92.1 14.0 239 1-283 38-292 (305)
45 COG2256 MGS1 ATPase related to 98.6 1.3E-06 2.7E-11 87.3 15.3 193 1-220 56-266 (436)
46 COG4886 Leucine-rich repeat (L 98.6 3.9E-08 8.4E-13 104.9 5.0 158 322-490 110-269 (394)
47 PRK00080 ruvB Holliday junctio 98.6 1.5E-06 3.2E-11 89.7 15.4 244 1-280 59-310 (328)
48 COG4886 Leucine-rich repeat (L 98.5 1.3E-07 2.8E-12 100.9 6.9 101 354-458 97-198 (394)
49 KOG1909 Ran GTPase-activating 98.5 2E-08 4.3E-13 97.6 -0.0 139 347-488 27-197 (382)
50 KOG2982 Uncharacterized conser 98.5 2.8E-08 6.1E-13 94.2 0.7 224 353-592 48-287 (418)
51 TIGR02928 orc1/cdc6 family rep 98.5 1.6E-05 3.4E-10 83.9 21.4 263 1-280 48-350 (365)
52 COG3903 Predicted ATPase [Gene 98.5 6E-07 1.3E-11 90.2 8.8 276 1-297 22-312 (414)
53 PF01637 Arch_ATPase: Archaeal 98.3 2.3E-06 5.1E-11 84.0 10.3 166 1-171 28-233 (234)
54 PLN03150 hypothetical protein; 98.3 1E-06 2.2E-11 98.6 8.1 104 352-456 420-525 (623)
55 PF13855 LRR_8: Leucine rich r 98.3 5.7E-07 1.2E-11 67.1 3.9 58 351-409 2-60 (61)
56 TIGR03420 DnaA_homol_Hda DnaA 98.2 7.4E-06 1.6E-10 79.9 10.9 143 1-176 46-205 (226)
57 PF13855 LRR_8: Leucine rich r 98.2 1.3E-06 2.9E-11 65.0 4.0 58 328-385 1-60 (61)
58 PRK08727 hypothetical protein; 98.2 1.5E-05 3.3E-10 77.6 11.4 136 1-169 49-201 (233)
59 PLN03150 hypothetical protein; 98.2 3.3E-06 7.1E-11 94.6 7.4 108 329-436 419-530 (623)
60 PRK08084 DNA replication initi 98.2 1.6E-05 3.4E-10 77.6 11.2 143 1-176 53-213 (235)
61 KOG2982 Uncharacterized conser 98.1 7.9E-07 1.7E-11 84.6 0.2 205 375-600 46-265 (418)
62 PF13401 AAA_22: AAA domain; P 98.0 8.9E-06 1.9E-10 71.7 6.1 107 1-109 12-125 (131)
63 KOG1909 Ran GTPase-activating 98.0 2.5E-06 5.3E-11 83.4 2.3 234 326-596 28-310 (382)
64 PRK09087 hypothetical protein; 98.0 3.9E-05 8.5E-10 74.1 10.4 96 78-176 90-199 (226)
65 KOG1859 Leucine-rich repeat pr 98.0 2.4E-07 5.2E-12 98.2 -5.5 180 321-513 102-290 (1096)
66 PRK13342 recombination factor 98.0 0.00015 3.2E-09 77.4 15.5 147 1-174 44-198 (413)
67 PRK05642 DNA replication initi 98.0 4.1E-05 8.8E-10 74.6 10.3 142 2-176 54-212 (234)
68 KOG0531 Protein phosphatase 1, 98.0 1.2E-06 2.5E-11 93.8 -1.0 104 324-431 91-196 (414)
69 KOG1947 Leucine rich repeat pr 98.0 1.5E-06 3.3E-11 95.6 -0.4 40 623-662 403-444 (482)
70 KOG0531 Protein phosphatase 1, 97.9 2.4E-06 5.3E-11 91.3 0.1 124 329-458 73-198 (414)
71 KOG2028 ATPase related to the 97.9 0.00016 3.5E-09 71.2 11.9 144 1-166 170-330 (554)
72 PF00308 Bac_DnaA: Bacterial d 97.8 0.00015 3.3E-09 69.7 10.1 153 2-176 43-212 (219)
73 PF05496 RuvB_N: Holliday junc 97.8 0.00015 3.2E-09 67.9 9.5 70 101-173 151-222 (233)
74 PF13173 AAA_14: AAA domain 97.8 5.4E-05 1.2E-09 66.2 6.2 108 1-131 10-126 (128)
75 KOG1947 Leucine rich repeat pr 97.7 2.4E-06 5.1E-11 94.1 -3.3 169 473-662 240-418 (482)
76 PRK04195 replication factor C 97.7 0.00079 1.7E-08 73.3 15.9 145 1-171 47-201 (482)
77 KOG1644 U2-associated snRNP A' 97.7 5.8E-05 1.3E-09 68.3 5.8 103 328-431 42-150 (233)
78 cd01128 rho_factor Transcripti 97.7 4.8E-05 1E-09 74.1 5.7 85 1-87 24-115 (249)
79 PF14516 AAA_35: AAA-like doma 97.7 0.006 1.3E-07 62.9 21.2 167 3-179 41-246 (331)
80 PRK07003 DNA polymerase III su 97.7 0.0011 2.3E-08 73.3 16.1 100 74-176 118-225 (830)
81 PRK08903 DnaA regulatory inact 97.7 0.00029 6.3E-09 68.6 10.6 139 1-176 50-203 (227)
82 PRK15386 type III secretion pr 97.7 6.9E-05 1.5E-09 77.1 6.0 80 327-416 51-133 (426)
83 PRK14087 dnaA chromosomal repl 97.7 0.00057 1.2E-08 73.1 13.2 157 2-176 150-323 (450)
84 PRK05564 DNA polymerase III su 97.6 0.001 2.2E-08 68.2 14.6 144 1-170 34-188 (313)
85 PRK14961 DNA polymerase III su 97.6 0.0013 2.8E-08 68.8 15.4 92 74-168 118-216 (363)
86 PLN03025 replication factor C 97.6 0.00076 1.6E-08 69.3 13.5 151 1-172 42-201 (319)
87 PF12799 LRR_4: Leucine Rich r 97.6 4.4E-05 9.6E-10 52.0 2.9 30 401-430 4-33 (44)
88 PRK06620 hypothetical protein; 97.6 0.00046 1E-08 66.0 10.7 90 77-169 87-186 (214)
89 PRK13341 recombination factor 97.6 0.00046 1E-08 77.7 12.3 139 1-166 60-211 (725)
90 PRK14949 DNA polymerase III su 97.6 0.0012 2.5E-08 74.4 14.7 97 73-172 117-221 (944)
91 TIGR00678 holB DNA polymerase 97.6 0.0017 3.8E-08 61.0 14.0 85 74-167 95-186 (188)
92 PRK09376 rho transcription ter 97.6 0.00016 3.4E-09 73.7 6.8 82 1-87 177-268 (416)
93 PRK14960 DNA polymerase III su 97.6 0.0018 3.8E-08 70.7 15.1 96 74-172 117-220 (702)
94 PRK06645 DNA polymerase III su 97.5 0.0015 3.1E-08 70.5 14.5 91 74-167 127-224 (507)
95 PRK14088 dnaA chromosomal repl 97.5 0.0012 2.6E-08 70.6 13.4 170 1-192 138-332 (440)
96 KOG3665 ZYG-1-like serine/thre 97.5 3.8E-05 8.3E-10 85.8 1.9 128 328-457 122-261 (699)
97 PRK14957 DNA polymerase III su 97.5 0.0021 4.6E-08 69.8 15.0 99 73-174 117-223 (546)
98 KOG3665 ZYG-1-like serine/thre 97.5 2.2E-05 4.7E-10 87.7 -0.4 107 526-654 147-259 (699)
99 PRK12402 replication factor C 97.5 0.0023 4.9E-08 66.7 14.8 93 75-170 125-224 (337)
100 TIGR00362 DnaA chromosomal rep 97.5 0.0015 3.3E-08 69.7 13.6 150 1-172 144-310 (405)
101 PRK12323 DNA polymerase III su 97.5 0.0022 4.7E-08 69.9 14.5 98 74-174 123-228 (700)
102 PRK00149 dnaA chromosomal repl 97.5 0.0014 3.1E-08 70.8 13.4 168 1-192 156-349 (450)
103 PRK14963 DNA polymerase III su 97.5 0.0022 4.7E-08 69.5 14.5 93 74-169 115-214 (504)
104 KOG1859 Leucine-rich repeat pr 97.4 3E-06 6.6E-11 90.1 -7.4 114 315-431 174-289 (1096)
105 PF12799 LRR_4: Leucine Rich r 97.4 0.00018 4E-09 48.9 3.8 40 374-414 1-40 (44)
106 COG1474 CDC6 Cdc6-related prot 97.4 0.0056 1.2E-07 63.4 16.2 169 1-172 50-238 (366)
107 TIGR01242 26Sp45 26S proteasom 97.4 0.00094 2E-08 70.0 10.1 138 1-166 164-328 (364)
108 KOG4579 Leucine-rich repeat (L 97.4 1.9E-05 4.2E-10 66.6 -2.1 84 347-431 50-133 (177)
109 PRK14958 DNA polymerase III su 97.3 0.0042 9.1E-08 67.5 15.0 150 1-172 46-221 (509)
110 COG1222 RPT1 ATP-dependent 26S 97.3 0.0044 9.5E-08 61.6 13.5 165 1-193 193-393 (406)
111 PRK14962 DNA polymerase III su 97.3 0.0044 9.5E-08 66.6 14.8 100 74-176 116-223 (472)
112 PRK12422 chromosomal replicati 97.3 0.0026 5.6E-08 67.9 13.0 141 1-165 149-306 (445)
113 PRK15386 type III secretion pr 97.3 0.00063 1.4E-08 70.1 7.6 70 502-593 52-121 (426)
114 PTZ00112 origin recognition co 97.3 0.003 6.5E-08 70.4 13.1 141 1-142 789-951 (1164)
115 PRK14086 dnaA chromosomal repl 97.3 0.0037 8.1E-08 68.1 13.7 149 2-172 323-488 (617)
116 COG5238 RNA1 Ran GTPase-activa 97.3 0.00014 2.9E-09 68.9 2.4 140 347-489 27-198 (388)
117 cd00009 AAA The AAA+ (ATPases 97.3 0.0011 2.3E-08 59.4 8.3 94 1-111 27-131 (151)
118 PRK07940 DNA polymerase III su 97.3 0.0044 9.4E-08 64.9 13.7 88 74-169 116-210 (394)
119 PRK14964 DNA polymerase III su 97.3 0.0066 1.4E-07 65.0 15.1 92 74-168 115-213 (491)
120 COG3267 ExeA Type II secretory 97.3 0.0093 2E-07 56.7 14.1 168 2-173 60-246 (269)
121 TIGR00767 rho transcription te 97.2 0.0011 2.5E-08 67.9 8.4 85 1-87 176-267 (415)
122 PRK14969 DNA polymerase III su 97.2 0.0072 1.6E-07 66.2 15.1 100 74-176 118-225 (527)
123 PRK08691 DNA polymerase III su 97.2 0.0065 1.4E-07 67.1 14.4 96 74-172 118-221 (709)
124 PRK03992 proteasome-activating 97.2 0.0056 1.2E-07 64.5 13.5 137 1-165 173-336 (389)
125 PRK07994 DNA polymerase III su 97.2 0.0062 1.3E-07 67.4 14.0 99 73-174 117-223 (647)
126 PRK05707 DNA polymerase III su 97.2 0.011 2.4E-07 60.5 15.0 92 74-172 105-203 (328)
127 TIGR02397 dnaX_nterm DNA polym 97.1 0.015 3.3E-07 61.0 16.3 98 74-174 116-220 (355)
128 PRK07471 DNA polymerase III su 97.1 0.011 2.3E-07 61.5 14.7 92 74-172 140-238 (365)
129 PRK14956 DNA polymerase III su 97.1 0.0051 1.1E-07 65.2 12.2 97 73-172 119-223 (484)
130 PRK00440 rfc replication facto 97.1 0.013 2.9E-07 60.4 15.3 92 75-169 102-200 (319)
131 PRK07764 DNA polymerase III su 97.1 0.0099 2.1E-07 68.1 15.1 94 73-169 118-218 (824)
132 PRK08451 DNA polymerase III su 97.1 0.019 4.1E-07 62.2 16.4 95 74-171 116-217 (535)
133 PRK14951 DNA polymerase III su 97.1 0.013 2.8E-07 64.7 15.2 93 74-169 123-222 (618)
134 KOG4579 Leucine-rich repeat (L 97.0 8.8E-05 1.9E-09 62.8 -1.4 92 324-417 49-142 (177)
135 PRK14959 DNA polymerase III su 97.0 0.0089 1.9E-07 65.6 13.3 100 74-176 118-225 (624)
136 PRK14955 DNA polymerase III su 97.0 0.0078 1.7E-07 63.8 12.7 93 74-169 126-225 (397)
137 PF05621 TniB: Bacterial TniB 97.0 0.016 3.4E-07 57.3 13.4 163 2-167 70-256 (302)
138 PTZ00361 26 proteosome regulat 96.9 0.0029 6.3E-08 66.9 8.7 137 1-165 225-388 (438)
139 PTZ00454 26S protease regulato 96.9 0.0098 2.1E-07 62.5 12.5 137 1-165 187-350 (398)
140 PRK14971 DNA polymerase III su 96.9 0.024 5.1E-07 63.2 16.2 91 74-167 120-217 (614)
141 TIGR03689 pup_AAA proteasome A 96.9 0.0093 2E-07 64.2 12.5 126 1-142 224-380 (512)
142 TIGR02880 cbbX_cfxQ probable R 96.9 0.0092 2E-07 60.0 11.8 68 76-143 122-211 (284)
143 KOG1644 U2-associated snRNP A' 96.9 0.0012 2.7E-08 59.9 4.7 104 377-487 45-151 (233)
144 CHL00181 cbbX CbbX; Provisiona 96.9 0.014 3.1E-07 58.6 12.4 125 1-144 67-213 (287)
145 PRK04132 replication factor C 96.9 0.033 7.1E-07 63.6 16.5 150 1-172 574-732 (846)
146 COG0593 DnaA ATPase involved i 96.8 0.0071 1.5E-07 62.6 10.2 168 2-194 122-315 (408)
147 PRK09112 DNA polymerase III su 96.8 0.012 2.7E-07 60.6 12.1 93 74-171 140-239 (351)
148 PRK08116 hypothetical protein; 96.8 0.0024 5.2E-08 63.4 6.6 90 2-109 123-220 (268)
149 TIGR02881 spore_V_K stage V sp 96.8 0.0072 1.6E-07 60.1 10.0 67 76-144 106-195 (261)
150 KOG2739 Leucine-rich acidic nu 96.8 0.00094 2E-08 63.4 3.3 84 326-410 41-128 (260)
151 PRK05896 DNA polymerase III su 96.8 0.02 4.3E-07 62.6 13.7 96 75-173 119-222 (605)
152 PRK14970 DNA polymerase III su 96.8 0.034 7.5E-07 58.5 15.3 91 74-167 107-204 (367)
153 PRK14954 DNA polymerase III su 96.8 0.025 5.3E-07 62.8 14.5 94 74-170 126-227 (620)
154 PRK06305 DNA polymerase III su 96.8 0.032 7E-07 59.9 15.1 96 74-172 120-223 (451)
155 PRK07133 DNA polymerase III su 96.8 0.027 5.8E-07 63.0 14.6 97 74-173 117-221 (725)
156 COG2255 RuvB Holliday junction 96.7 0.019 4.2E-07 55.3 11.2 65 102-169 154-220 (332)
157 TIGR02903 spore_lon_C ATP-depe 96.7 0.0093 2E-07 66.6 10.6 110 63-175 280-398 (615)
158 PRK09111 DNA polymerase III su 96.7 0.034 7.5E-07 61.5 14.6 96 74-172 131-233 (598)
159 PRK14953 DNA polymerase III su 96.6 0.056 1.2E-06 58.5 15.7 97 74-173 118-221 (486)
160 PRK14952 DNA polymerase III su 96.6 0.048 1E-06 60.1 15.2 100 74-176 117-224 (584)
161 KOG2123 Uncharacterized conser 96.6 0.00013 2.9E-09 69.1 -4.0 78 328-408 19-98 (388)
162 smart00382 AAA ATPases associa 96.5 0.0074 1.6E-07 53.4 7.3 81 1-88 10-91 (148)
163 COG3899 Predicted ATPase [Gene 96.5 0.034 7.3E-07 64.6 14.0 205 73-298 152-385 (849)
164 KOG2739 Leucine-rich acidic nu 96.5 0.0016 3.5E-08 61.8 2.5 40 372-411 63-104 (260)
165 PRK14950 DNA polymerase III su 96.5 0.081 1.8E-06 59.1 16.2 98 74-174 119-223 (585)
166 PRK06647 DNA polymerase III su 96.4 0.098 2.1E-06 57.7 16.2 93 74-169 118-217 (563)
167 KOG0743 AAA+-type ATPase [Post 96.4 0.054 1.2E-06 56.0 13.1 69 103-177 341-414 (457)
168 CHL00176 ftsH cell division pr 96.4 0.028 6E-07 62.8 12.0 138 1-165 224-387 (638)
169 KOG0741 AAA+-type ATPase [Post 96.4 0.054 1.2E-06 56.7 12.7 136 1-162 546-704 (744)
170 KOG0733 Nuclear AAA ATPase (VC 96.3 0.037 8E-07 59.0 11.3 141 1-166 553-718 (802)
171 TIGR01241 FtsH_fam ATP-depende 96.3 0.046 9.9E-07 60.0 12.7 138 1-165 96-259 (495)
172 PHA02544 44 clamp loader, smal 96.2 0.036 7.9E-07 57.0 11.2 111 1-138 51-171 (316)
173 PF13306 LRR_5: Leucine rich r 96.2 0.017 3.6E-07 50.4 7.3 117 324-448 8-128 (129)
174 PRK08769 DNA polymerase III su 96.2 0.15 3.3E-06 51.8 14.9 90 74-172 112-208 (319)
175 PRK14948 DNA polymerase III su 96.2 0.16 3.5E-06 56.7 16.3 96 74-172 120-222 (620)
176 TIGR02639 ClpA ATP-dependent C 96.2 0.045 9.8E-07 62.9 12.3 126 1-141 211-359 (731)
177 KOG2123 Uncharacterized conser 96.1 0.00063 1.4E-08 64.7 -2.3 95 310-405 24-124 (388)
178 PRK06871 DNA polymerase III su 96.1 0.17 3.8E-06 51.4 14.9 87 74-168 106-199 (325)
179 PF02562 PhoH: PhoH-like prote 96.1 0.011 2.5E-07 55.4 5.9 104 1-108 27-154 (205)
180 PRK12608 transcription termina 96.1 0.029 6.2E-07 57.5 9.1 85 1-87 141-232 (380)
181 PRK11331 5-methylcytosine-spec 96.1 0.014 3E-07 61.2 6.9 80 1-87 202-284 (459)
182 KOG0989 Replication factor C, 96.0 0.056 1.2E-06 52.8 10.1 155 1-172 65-231 (346)
183 PRK12377 putative replication 95.9 0.014 3E-07 57.0 5.9 88 1-108 109-204 (248)
184 PRK08181 transposase; Validate 95.9 0.011 2.5E-07 58.3 5.2 88 1-109 114-208 (269)
185 PF00004 AAA: ATPase family as 95.9 0.013 2.8E-07 51.3 5.0 17 1-17 6-22 (132)
186 KOG3864 Uncharacterized conser 95.9 0.00083 1.8E-08 61.1 -2.6 69 522-598 120-190 (221)
187 PRK06921 hypothetical protein; 95.9 0.0095 2.1E-07 59.1 4.5 28 2-32 126-154 (266)
188 COG5238 RNA1 Ran GTPase-activa 95.8 0.019 4.2E-07 54.7 6.1 166 326-493 28-231 (388)
189 PRK04296 thymidine kinase; Pro 95.8 0.01 2.2E-07 55.8 4.2 104 2-111 11-117 (190)
190 PRK05563 DNA polymerase III su 95.8 0.3 6.5E-06 54.1 16.2 92 74-168 118-216 (559)
191 PRK14965 DNA polymerase III su 95.7 0.15 3.3E-06 56.7 13.7 97 74-173 118-222 (576)
192 KOG0728 26S proteasome regulat 95.7 0.11 2.4E-06 48.9 10.5 136 1-160 189-351 (404)
193 PF01695 IstB_IS21: IstB-like 95.7 0.0099 2.2E-07 55.0 3.7 86 1-108 55-148 (178)
194 cd00561 CobA_CobO_BtuR ATP:cor 95.7 0.023 5.1E-07 50.9 5.8 106 2-111 11-139 (159)
195 KOG0733 Nuclear AAA ATPase (VC 95.7 0.12 2.5E-06 55.3 11.6 64 1-87 231-294 (802)
196 TIGR03345 VI_ClpV1 type VI sec 95.6 0.11 2.3E-06 60.6 12.5 149 1-165 216-389 (852)
197 KOG2543 Origin recognition com 95.6 0.029 6.3E-07 56.4 6.8 132 2-139 39-192 (438)
198 KOG0736 Peroxisome assembly fa 95.6 0.12 2.7E-06 56.7 11.9 114 1-137 713-853 (953)
199 PF04665 Pox_A32: Poxvirus A32 95.6 0.029 6.3E-07 54.0 6.5 29 1-32 21-49 (241)
200 KOG0744 AAA+-type ATPase [Post 95.5 0.12 2.7E-06 50.8 10.3 125 1-140 185-340 (423)
201 PRK06835 DNA replication prote 95.5 0.014 2.9E-07 59.7 4.1 29 1-32 191-219 (329)
202 KOG0735 AAA+-type ATPase [Post 95.5 0.17 3.7E-06 55.1 12.1 138 1-166 709-870 (952)
203 TIGR01243 CDC48 AAA family ATP 95.5 0.12 2.6E-06 59.6 12.2 138 1-166 495-657 (733)
204 CHL00195 ycf46 Ycf46; Provisio 95.4 0.13 2.9E-06 55.4 11.6 141 1-166 267-429 (489)
205 PRK08118 topology modulation p 95.4 0.029 6.2E-07 51.4 5.6 29 1-29 9-37 (167)
206 cd01120 RecA-like_NTPases RecA 95.4 0.081 1.8E-06 48.1 8.6 34 1-37 7-40 (165)
207 PRK06526 transposase; Provisio 95.3 0.023 5.1E-07 55.8 4.9 17 1-17 106-122 (254)
208 PRK08939 primosomal protein Dn 95.3 0.033 7.2E-07 56.4 5.9 86 2-108 165-259 (306)
209 PRK07952 DNA replication prote 95.2 0.032 6.9E-07 54.3 5.5 88 2-108 108-203 (244)
210 PRK07261 topology modulation p 95.2 0.043 9.3E-07 50.5 6.2 61 1-86 8-68 (171)
211 PRK10536 hypothetical protein; 95.2 0.057 1.2E-06 52.3 7.1 38 72-109 170-212 (262)
212 PRK08058 DNA polymerase III su 95.2 0.51 1.1E-05 48.6 14.5 65 74-138 109-180 (329)
213 TIGR02640 gas_vesic_GvpN gas v 95.1 0.23 5.1E-06 49.3 11.5 17 1-17 29-45 (262)
214 PF13191 AAA_16: AAA ATPase do 95.0 0.038 8.2E-07 51.7 5.4 17 1-17 32-48 (185)
215 PRK11034 clpA ATP-dependent Cl 94.9 0.28 6.2E-06 56.0 12.8 125 1-140 215-362 (758)
216 cd00544 CobU Adenosylcobinamid 94.9 0.047 1E-06 50.0 5.3 119 2-142 8-146 (169)
217 TIGR00602 rad24 checkpoint pro 94.9 0.079 1.7E-06 58.8 8.0 53 120-172 267-324 (637)
218 COG1373 Predicted ATPase (AAA+ 94.8 0.21 4.5E-06 52.8 10.6 63 75-137 94-164 (398)
219 PRK07993 DNA polymerase III su 94.8 0.5 1.1E-05 48.6 13.0 87 74-168 107-200 (334)
220 PF08423 Rad51: Rad51; InterP 94.7 0.13 2.8E-06 50.8 8.2 49 1-50 46-97 (256)
221 PRK06090 DNA polymerase III su 94.6 1.2 2.7E-05 45.2 15.2 105 74-193 107-218 (319)
222 PRK09361 radB DNA repair and r 94.6 0.078 1.7E-06 51.5 6.5 36 1-40 31-66 (225)
223 PRK07399 DNA polymerase III su 94.6 1 2.3E-05 45.9 14.8 91 74-171 123-220 (314)
224 CHL00095 clpC Clp protease ATP 94.6 0.26 5.6E-06 57.6 11.7 148 1-164 208-379 (821)
225 PF05673 DUF815: Protein of un 94.6 0.59 1.3E-05 44.9 11.9 16 2-17 61-76 (249)
226 PF10443 RNA12: RNA12 protein; 94.5 2.3 4.9E-05 44.4 16.9 249 1-280 25-369 (431)
227 PF13306 LRR_5: Leucine rich r 94.5 0.11 2.5E-06 45.0 6.8 104 345-455 7-112 (129)
228 TIGR03346 chaperone_ClpB ATP-d 94.5 0.75 1.6E-05 54.0 15.3 31 1-34 603-633 (852)
229 KOG0729 26S proteasome regulat 94.5 0.16 3.5E-06 48.3 7.9 90 1-114 219-330 (435)
230 cd01123 Rad51_DMC1_radA Rad51_ 94.5 0.15 3.2E-06 49.9 8.2 85 1-86 27-126 (235)
231 cd01131 PilT Pilus retraction 94.5 0.048 1E-06 51.6 4.5 102 1-112 9-111 (198)
232 PRK09183 transposase/IS protei 94.5 0.038 8.2E-07 54.7 3.9 17 1-17 110-126 (259)
233 KOG2227 Pre-initiation complex 94.4 1.8 4E-05 45.2 15.6 156 2-165 184-361 (529)
234 cd01393 recA_like RecA is a b 94.3 0.15 3.3E-06 49.4 7.9 82 1-86 27-125 (226)
235 TIGR02237 recomb_radB DNA repa 94.3 0.12 2.7E-06 49.4 7.1 39 1-43 20-58 (209)
236 TIGR02639 ClpA ATP-dependent C 94.3 0.8 1.7E-05 52.8 14.8 73 1-87 492-565 (731)
237 PF07693 KAP_NTPase: KAP famil 94.3 0.84 1.8E-05 47.1 13.8 75 65-139 160-262 (325)
238 PTZ00202 tuzin; Provisional 94.3 0.25 5.4E-06 51.4 9.3 127 1-140 294-434 (550)
239 TIGR03346 chaperone_ClpB ATP-d 94.3 0.44 9.5E-06 55.9 12.7 146 1-162 202-372 (852)
240 PF13504 LRR_7: Leucine rich r 94.2 0.029 6.4E-07 29.3 1.4 17 645-662 1-17 (17)
241 cd00983 recA RecA is a bacter 94.2 0.08 1.7E-06 53.6 5.7 77 1-85 63-143 (325)
242 PF07728 AAA_5: AAA domain (dy 94.1 0.026 5.7E-07 50.0 1.8 36 1-42 7-42 (139)
243 KOG3864 Uncharacterized conser 94.1 0.0087 1.9E-07 54.6 -1.3 63 506-577 129-192 (221)
244 cd01133 F1-ATPase_beta F1 ATP 94.1 0.21 4.5E-06 49.2 8.0 83 2-87 78-175 (274)
245 TIGR03877 thermo_KaiC_1 KaiC d 94.1 0.16 3.4E-06 49.7 7.3 102 1-108 29-169 (237)
246 PRK05541 adenylylsulfate kinas 94.1 0.15 3.3E-06 47.2 6.9 28 1-31 15-42 (176)
247 PRK10733 hflB ATP-dependent me 94.0 0.52 1.1E-05 53.3 12.2 138 1-165 193-356 (644)
248 PRK08699 DNA polymerase III su 94.0 0.68 1.5E-05 47.4 11.9 66 74-139 112-184 (325)
249 KOG0727 26S proteasome regulat 94.0 0.57 1.2E-05 44.4 10.1 130 1-154 197-353 (408)
250 PF00448 SRP54: SRP54-type pro 94.0 0.11 2.3E-06 49.0 5.6 81 1-84 9-92 (196)
251 PRK10865 protein disaggregatio 94.0 0.46 1E-05 55.5 12.0 31 1-34 606-636 (857)
252 KOG0730 AAA+-type ATPase [Post 93.9 0.51 1.1E-05 51.3 11.0 131 1-155 476-630 (693)
253 TIGR02012 tigrfam_recA protein 93.9 0.11 2.4E-06 52.6 5.8 78 1-86 63-144 (321)
254 cd01125 repA Hexameric Replica 93.8 0.53 1.1E-05 46.1 10.6 135 1-135 9-199 (239)
255 PRK05800 cobU adenosylcobinami 93.8 0.034 7.3E-07 51.0 1.9 121 2-142 10-146 (170)
256 TIGR00708 cobA cob(I)alamin ad 93.8 0.2 4.4E-06 45.6 6.8 109 2-110 14-140 (173)
257 TIGR01243 CDC48 AAA family ATP 93.8 0.5 1.1E-05 54.6 11.8 140 1-167 220-382 (733)
258 PRK10865 protein disaggregatio 93.7 0.68 1.5E-05 54.2 12.8 124 1-140 207-354 (857)
259 PRK04328 hypothetical protein; 93.7 0.15 3.3E-06 50.2 6.4 102 1-108 31-171 (249)
260 COG0470 HolB ATPase involved i 93.7 0.29 6.4E-06 50.4 9.0 110 1-128 32-169 (325)
261 PF00560 LRR_1: Leucine Rich R 93.7 0.028 6E-07 31.7 0.7 17 376-393 2-18 (22)
262 cd01394 radB RadB. The archaea 93.7 0.15 3.4E-06 49.1 6.4 34 1-37 27-60 (218)
263 KOG0735 AAA+-type ATPase [Post 93.7 0.61 1.3E-05 51.0 11.1 148 1-172 439-616 (952)
264 PRK09354 recA recombinase A; P 93.6 0.12 2.7E-06 52.7 5.8 78 1-86 68-149 (349)
265 COG1066 Sms Predicted ATP-depe 93.6 0.21 4.5E-06 51.2 7.1 78 2-87 102-180 (456)
266 PLN00020 ribulose bisphosphate 93.6 0.76 1.6E-05 47.0 11.0 17 1-17 156-172 (413)
267 PF07724 AAA_2: AAA domain (Cd 93.5 0.03 6.6E-07 51.4 1.1 34 1-37 11-45 (171)
268 TIGR02238 recomb_DMC1 meiotic 93.5 0.29 6.3E-06 49.7 8.2 50 1-51 104-156 (313)
269 KOG0739 AAA+-type ATPase [Post 93.5 0.59 1.3E-05 45.6 9.5 138 1-166 174-335 (439)
270 COG0542 clpA ATP-binding subun 93.4 0.11 2.4E-06 58.2 5.3 76 1-87 529-605 (786)
271 KOG0652 26S proteasome regulat 93.3 0.76 1.6E-05 43.8 9.8 105 74-178 263-393 (424)
272 PLN03187 meiotic recombination 93.3 0.35 7.6E-06 49.6 8.4 51 1-52 134-187 (344)
273 PRK04301 radA DNA repair and r 93.3 0.37 8.1E-06 49.4 8.8 49 1-50 110-161 (317)
274 COG1484 DnaC DNA replication p 93.2 0.27 6E-06 48.3 7.3 66 1-86 113-178 (254)
275 PRK06964 DNA polymerase III su 93.1 2.3 5E-05 43.8 13.9 85 74-169 131-222 (342)
276 PF13481 AAA_25: AAA domain; P 93.1 0.26 5.6E-06 46.4 6.7 36 1-36 40-82 (193)
277 COG1223 Predicted ATPase (AAA+ 93.0 0.83 1.8E-05 43.8 9.6 138 1-166 159-319 (368)
278 cd03115 SRP The signal recogni 93.0 0.27 5.8E-06 45.4 6.5 83 1-86 8-93 (173)
279 PRK05986 cob(I)alamin adenolsy 93.0 0.21 4.5E-06 46.2 5.6 109 2-110 31-158 (191)
280 cd01124 KaiC KaiC is a circadi 92.8 0.28 6E-06 45.9 6.5 32 1-35 7-38 (187)
281 COG0464 SpoVK ATPases of the A 92.7 0.93 2E-05 49.9 11.5 121 1-144 284-427 (494)
282 KOG0730 AAA+-type ATPase [Post 92.7 1.1 2.5E-05 48.7 11.3 139 1-166 226-386 (693)
283 PF00560 LRR_1: Leucine Rich R 92.7 0.055 1.2E-06 30.4 0.9 19 400-418 2-20 (22)
284 KOG0731 AAA+-type ATPase conta 92.5 1.1 2.4E-05 50.2 11.3 141 1-168 352-520 (774)
285 cd01121 Sms Sms (bacterial rad 92.4 0.3 6.5E-06 50.9 6.7 74 2-84 91-167 (372)
286 TIGR03881 KaiC_arch_4 KaiC dom 92.4 0.45 9.7E-06 46.3 7.6 102 1-108 28-164 (229)
287 CHL00206 ycf2 Ycf2; Provisiona 92.4 1.5 3.2E-05 54.1 12.8 17 1-17 1638-1654(2281)
288 PF13177 DNA_pol3_delta2: DNA 92.4 0.76 1.6E-05 41.8 8.5 54 74-127 101-161 (162)
289 PRK07132 DNA polymerase III su 92.3 3.6 7.9E-05 41.5 13.9 90 74-172 89-185 (299)
290 TIGR02858 spore_III_AA stage I 92.2 0.62 1.4E-05 46.2 8.2 107 1-113 119-232 (270)
291 CHL00095 clpC Clp protease ATP 92.1 0.39 8.5E-06 56.1 7.9 76 1-87 547-623 (821)
292 PRK06762 hypothetical protein; 92.1 1.9 4.1E-05 39.3 11.1 17 1-17 10-26 (166)
293 COG0466 Lon ATP-dependent Lon 92.0 0.58 1.3E-05 51.5 8.3 122 1-140 358-508 (782)
294 COG0396 sufC Cysteine desulfur 92.0 0.98 2.1E-05 42.7 8.7 60 63-122 150-216 (251)
295 TIGR03345 VI_ClpV1 type VI sec 91.9 0.32 6.9E-06 56.7 6.7 29 1-32 604-632 (852)
296 KOG0473 Leucine-rich repeat pr 91.8 0.0065 1.4E-07 56.5 -5.6 87 345-433 37-123 (326)
297 TIGR00763 lon ATP-dependent pr 91.7 1 2.2E-05 52.3 10.6 17 1-17 355-371 (775)
298 cd01135 V_A-ATPase_B V/A-type 91.5 0.53 1.2E-05 46.3 6.8 87 2-88 78-179 (276)
299 KOG1514 Origin recognition com 91.5 3.1 6.7E-05 45.8 12.9 134 2-141 431-590 (767)
300 PLN03186 DNA repair protein RA 91.4 0.71 1.5E-05 47.5 7.9 50 1-51 131-183 (342)
301 KOG3347 Predicted nucleotide k 91.4 0.35 7.7E-06 42.0 4.7 92 2-116 16-110 (176)
302 COG1875 NYN ribonuclease and A 91.2 0.38 8.3E-06 48.4 5.5 106 2-109 254-387 (436)
303 KOG0738 AAA+-type ATPase [Post 91.2 2.5 5.4E-05 43.2 11.0 17 1-17 253-269 (491)
304 PTZ00088 adenylate kinase 1; P 91.1 0.32 6.9E-06 47.0 4.8 17 1-17 14-30 (229)
305 PTZ00035 Rad51 protein; Provis 91.1 1 2.2E-05 46.4 8.8 50 1-51 126-178 (337)
306 PF13207 AAA_17: AAA domain; P 91.1 0.14 2.9E-06 44.0 2.1 17 1-17 7-23 (121)
307 COG2812 DnaX DNA polymerase II 91.1 1.9 4.1E-05 46.6 10.9 90 74-166 118-214 (515)
308 KOG1969 DNA replication checkp 91.0 0.42 9.2E-06 52.4 6.0 64 1-87 334-399 (877)
309 TIGR01359 UMP_CMP_kin_fam UMP- 91.0 0.54 1.2E-05 43.8 6.2 17 1-17 7-23 (183)
310 COG4608 AppF ABC-type oligopep 90.9 0.8 1.7E-05 44.5 7.2 111 2-116 48-176 (268)
311 COG0468 RecA RecA/RadA recombi 90.9 1 2.2E-05 44.6 8.2 81 1-85 68-151 (279)
312 PRK08533 flagellar accessory p 90.8 0.83 1.8E-05 44.3 7.5 40 1-45 32-71 (230)
313 KOG0737 AAA+-type ATPase [Post 90.8 1.6 3.4E-05 44.2 9.3 23 1-26 135-157 (386)
314 COG2884 FtsE Predicted ATPase 90.8 1.7 3.8E-05 39.8 8.7 80 38-117 114-204 (223)
315 TIGR02239 recomb_RAD51 DNA rep 90.8 1 2.2E-05 46.0 8.4 50 1-51 104-156 (316)
316 PRK14722 flhF flagellar biosyn 90.7 0.77 1.7E-05 47.6 7.4 80 1-85 145-225 (374)
317 PRK11034 clpA ATP-dependent Cl 90.7 1.3 2.8E-05 50.8 9.8 17 1-17 496-512 (758)
318 TIGR00959 ffh signal recogniti 90.7 0.73 1.6E-05 48.9 7.4 83 1-85 107-192 (428)
319 PRK05973 replicative DNA helic 90.5 1.1 2.3E-05 43.5 7.7 32 1-35 72-103 (237)
320 PRK00771 signal recognition pa 90.5 1.3 2.9E-05 47.1 9.2 80 1-84 103-184 (437)
321 PRK13849 putative crown gall t 90.4 0.91 2E-05 44.0 7.3 39 2-43 11-49 (231)
322 TIGR02236 recomb_radA DNA repa 90.4 0.88 1.9E-05 46.5 7.6 50 1-51 103-155 (310)
323 COG3854 SpoIIIAA ncharacterize 90.3 1 2.2E-05 42.4 7.0 100 1-108 145-251 (308)
324 cd01122 GP4d_helicase GP4d_hel 90.3 1.2 2.5E-05 44.6 8.3 44 1-48 38-81 (271)
325 PRK10867 signal recognition pa 90.2 0.77 1.7E-05 48.8 7.1 48 1-51 108-157 (433)
326 PF00406 ADK: Adenylate kinase 90.2 0.62 1.3E-05 41.8 5.6 17 1-17 4-20 (151)
327 PF03215 Rad17: Rad17 cell cyc 90.2 3 6.5E-05 45.6 11.7 55 119-173 205-265 (519)
328 TIGR03878 thermo_KaiC_2 KaiC d 90.2 1.2 2.6E-05 44.2 8.1 33 1-36 44-76 (259)
329 PRK06067 flagellar accessory p 90.2 0.95 2.1E-05 44.1 7.3 79 1-85 33-130 (234)
330 PRK12724 flagellar biosynthesi 90.1 1.6 3.4E-05 45.8 9.1 50 1-52 231-281 (432)
331 KOG2170 ATPase of the AAA+ sup 90.1 1.4 3.1E-05 43.3 8.0 67 2-87 119-190 (344)
332 PRK11889 flhF flagellar biosyn 90.1 1.9 4.1E-05 44.8 9.4 79 1-84 249-329 (436)
333 cd02037 MRP-like MRP (Multiple 90.0 0.6 1.3E-05 42.8 5.5 31 2-35 9-39 (169)
334 PF00154 RecA: recA bacterial 90.0 0.61 1.3E-05 47.2 5.9 79 1-87 61-143 (322)
335 smart00367 LRR_CC Leucine-rich 90.0 0.16 3.5E-06 29.9 1.1 17 644-660 1-17 (26)
336 PF10236 DAP3: Mitochondrial r 90.0 6.6 0.00014 40.0 13.4 49 121-169 258-306 (309)
337 PRK14974 cell division protein 89.9 1.6 3.5E-05 44.7 8.9 83 1-86 148-233 (336)
338 TIGR01360 aden_kin_iso1 adenyl 89.8 1.5 3.3E-05 40.9 8.3 17 1-17 11-27 (188)
339 TIGR00064 ftsY signal recognit 89.7 1.3 2.7E-05 44.2 7.8 82 1-85 80-164 (272)
340 COG0563 Adk Adenylate kinase a 89.6 0.51 1.1E-05 43.6 4.6 17 1-17 8-24 (178)
341 TIGR01650 PD_CobS cobaltochela 89.4 4.8 0.0001 40.9 11.6 17 1-17 72-88 (327)
342 PRK11823 DNA repair protein Ra 89.4 0.54 1.2E-05 50.6 5.3 31 2-35 89-119 (446)
343 KOG0734 AAA+-type ATPase conta 89.4 3.2 6.9E-05 44.2 10.4 17 1-17 345-361 (752)
344 PRK14721 flhF flagellar biosyn 89.3 2.1 4.6E-05 45.2 9.4 51 1-52 199-250 (420)
345 PRK09519 recA DNA recombinatio 89.3 0.85 1.8E-05 51.8 6.8 77 1-85 68-148 (790)
346 KOG2004 Mitochondrial ATP-depe 89.3 2.2 4.7E-05 47.1 9.4 122 1-140 446-596 (906)
347 PRK10875 recD exonuclease V su 89.0 0.91 2E-05 50.7 6.8 106 2-107 176-299 (615)
348 TIGR01420 pilT_fam pilus retra 88.9 0.44 9.6E-06 49.4 4.1 97 1-107 130-227 (343)
349 TIGR02902 spore_lonB ATP-depen 88.8 2.7 5.8E-05 46.4 10.3 43 100-142 233-278 (531)
350 PRK12597 F0F1 ATP synthase sub 88.6 0.79 1.7E-05 48.9 5.7 84 2-87 152-249 (461)
351 PF07726 AAA_3: ATPase family 88.6 0.21 4.6E-06 42.6 1.2 23 1-26 7-29 (131)
352 TIGR03880 KaiC_arch_3 KaiC dom 88.5 1.2 2.7E-05 43.0 6.7 31 2-35 25-55 (224)
353 PF00006 ATP-synt_ab: ATP synt 88.3 1.3 2.8E-05 42.3 6.5 42 2-48 24-66 (215)
354 COG5635 Predicted NTPase (NACH 88.2 1.6 3.5E-05 51.1 8.6 186 2-194 231-449 (824)
355 cd03247 ABCC_cytochrome_bd The 88.2 2.5 5.4E-05 39.1 8.3 107 1-114 36-161 (178)
356 KOG0991 Replication factor C, 88.1 1.4 3.1E-05 41.5 6.3 38 1-39 56-93 (333)
357 PRK13695 putative NTPase; Prov 88.1 0.63 1.4E-05 43.0 4.2 38 75-112 96-138 (174)
358 PRK14723 flhF flagellar biosyn 88.1 2 4.4E-05 48.7 8.7 80 1-85 193-273 (767)
359 TIGR00416 sms DNA repair prote 88.0 0.9 1.9E-05 48.9 5.8 31 2-35 103-133 (454)
360 PF13604 AAA_30: AAA domain; P 88.0 0.56 1.2E-05 44.3 3.8 94 1-107 26-128 (196)
361 PRK08233 hypothetical protein; 88.0 1.2 2.7E-05 41.2 6.2 17 1-17 11-27 (182)
362 PF13238 AAA_18: AAA domain; P 87.9 0.33 7.2E-06 42.0 2.2 17 1-17 6-22 (129)
363 KOG0473 Leucine-rich repeat pr 87.9 0.029 6.3E-07 52.3 -4.7 92 364-458 32-123 (326)
364 cd03223 ABCD_peroxisomal_ALDP 87.8 2.3 4.9E-05 38.9 7.7 106 2-114 36-152 (166)
365 cd03214 ABC_Iron-Siderophores_ 87.8 1.7 3.7E-05 40.3 7.0 109 1-113 33-161 (180)
366 KOG0726 26S proteasome regulat 87.7 2.7 5.8E-05 41.1 8.0 153 1-177 227-406 (440)
367 PF08433 KTI12: Chromatin asso 87.6 0.48 1E-05 47.0 3.2 17 1-17 9-25 (270)
368 PRK05703 flhF flagellar biosyn 87.6 1.6 3.6E-05 46.4 7.5 79 1-84 229-308 (424)
369 PF06745 KaiC: KaiC; InterPro 87.6 0.8 1.7E-05 44.4 4.8 81 1-87 27-127 (226)
370 CHL00060 atpB ATP synthase CF1 87.6 1.6 3.5E-05 46.7 7.2 85 2-88 170-275 (494)
371 TIGR01040 V-ATPase_V1_B V-type 87.5 0.99 2.2E-05 47.7 5.5 86 2-87 150-259 (466)
372 PRK09280 F0F1 ATP synthase sub 87.5 2.7 5.9E-05 44.8 8.8 84 2-87 153-250 (463)
373 PHA02518 ParA-like protein; Pr 87.3 0.74 1.6E-05 44.0 4.3 38 2-42 10-47 (211)
374 PRK09302 circadian clock prote 87.3 1.3 2.7E-05 49.0 6.6 103 2-109 40-176 (509)
375 TIGR03499 FlhF flagellar biosy 87.2 2.1 4.6E-05 43.0 7.7 79 1-84 202-281 (282)
376 COG2607 Predicted ATPase (AAA+ 87.1 1.4 3.1E-05 41.8 5.8 16 2-17 94-109 (287)
377 PRK12678 transcription termina 87.0 0.95 2.1E-05 49.0 5.1 84 1-87 424-515 (672)
378 cd03228 ABCC_MRP_Like The MRP 86.9 2.1 4.6E-05 39.3 7.0 48 68-115 107-160 (171)
379 PRK14526 adenylate kinase; Pro 86.8 2.5 5.4E-05 40.3 7.5 17 1-17 8-24 (211)
380 COG1102 Cmk Cytidylate kinase 86.8 1 2.2E-05 40.0 4.3 38 1-52 8-45 (179)
381 PRK07276 DNA polymerase III su 86.7 11 0.00023 37.8 12.1 63 74-137 103-172 (290)
382 COG1618 Predicted nucleotide k 86.7 0.6 1.3E-05 41.4 2.9 17 1-17 13-29 (179)
383 COG0465 HflB ATP-dependent Zn 86.6 4.5 9.8E-05 44.5 10.0 139 1-166 191-355 (596)
384 PRK00889 adenylylsulfate kinas 86.5 2.5 5.3E-05 39.0 7.2 17 1-17 12-28 (175)
385 cd03246 ABCC_Protease_Secretio 86.4 2.5 5.5E-05 38.9 7.2 48 67-114 106-160 (173)
386 PF01583 APS_kinase: Adenylyls 86.3 0.54 1.2E-05 42.1 2.5 28 1-31 10-37 (156)
387 COG4618 ArpD ABC-type protease 86.2 7.7 0.00017 41.3 11.0 52 65-116 480-538 (580)
388 COG1121 ZnuC ABC-type Mn/Zn tr 86.2 2.5 5.5E-05 41.1 7.2 49 65-113 147-202 (254)
389 cd01134 V_A-ATPase_A V/A-type 86.2 4.5 9.7E-05 41.3 9.1 41 2-47 166-207 (369)
390 PRK06995 flhF flagellar biosyn 86.2 5.8 0.00013 42.8 10.5 80 1-85 264-344 (484)
391 TIGR03574 selen_PSTK L-seryl-t 86.2 0.89 1.9E-05 44.8 4.3 17 1-17 7-23 (249)
392 cd00984 DnaB_C DnaB helicase C 86.1 2.8 6E-05 41.1 7.8 43 1-47 21-63 (242)
393 COG3910 Predicted ATPase [Gene 86.1 4.3 9.3E-05 37.2 7.9 122 2-125 46-202 (233)
394 KOG1051 Chaperone HSP104 and r 86.1 1.6 3.4E-05 50.2 6.5 74 1-88 599-673 (898)
395 TIGR03305 alt_F1F0_F1_bet alte 86.1 1.4 3.1E-05 46.7 5.9 84 2-87 147-244 (449)
396 PRK12723 flagellar biosynthesi 86.0 2.7 5.9E-05 44.0 7.8 81 1-85 182-264 (388)
397 cd03229 ABC_Class3 This class 85.9 1.3 2.8E-05 41.1 4.9 47 68-114 111-165 (178)
398 cd01428 ADK Adenylate kinase ( 85.9 3.3 7.1E-05 38.9 7.9 17 1-17 7-23 (194)
399 TIGR03575 selen_PSTK_euk L-ser 85.8 3.3 7.1E-05 42.5 8.1 17 1-17 7-23 (340)
400 PRK06217 hypothetical protein; 85.7 1 2.2E-05 41.9 4.3 17 1-17 9-25 (183)
401 PRK03839 putative kinase; Prov 85.7 0.49 1.1E-05 43.9 2.1 17 1-17 8-24 (180)
402 PRK12726 flagellar biosynthesi 85.6 3.1 6.6E-05 43.1 7.8 80 1-85 214-295 (407)
403 PRK10787 DNA-binding ATP-depen 85.5 2.7 5.8E-05 48.6 8.2 21 120-140 486-506 (784)
404 PRK08972 fliI flagellum-specif 85.5 3.5 7.7E-05 43.6 8.4 82 2-88 171-265 (444)
405 cd02027 APSK Adenosine 5'-phos 85.4 2.1 4.5E-05 38.3 5.9 17 1-17 7-23 (149)
406 TIGR01351 adk adenylate kinase 85.3 1.6 3.5E-05 41.7 5.5 17 1-17 7-23 (210)
407 cd03216 ABC_Carb_Monos_I This 85.3 1.8 4E-05 39.4 5.6 103 1-113 34-145 (163)
408 PF01656 CbiA: CobQ/CobB/MinD/ 85.1 0.81 1.8E-05 43.0 3.3 37 2-41 8-44 (195)
409 TIGR01041 ATP_syn_B_arch ATP s 85.1 2.3 5E-05 45.5 6.9 91 2-93 150-257 (458)
410 PF00158 Sigma54_activat: Sigm 85.0 2 4.2E-05 39.4 5.6 75 2-87 31-105 (168)
411 COG0194 Gmk Guanylate kinase [ 85.0 2.2 4.7E-05 39.1 5.6 17 1-17 12-28 (191)
412 PRK12727 flagellar biosynthesi 84.9 2.7 5.8E-05 45.5 7.2 80 1-85 358-438 (559)
413 PF13671 AAA_33: AAA domain; P 84.8 0.6 1.3E-05 41.3 2.2 17 1-17 7-23 (143)
414 COG0572 Udk Uridine kinase [Nu 84.8 1.8 4E-05 40.8 5.3 69 2-76 17-85 (218)
415 cd02019 NK Nucleoside/nucleoti 84.7 0.69 1.5E-05 35.0 2.1 17 1-17 7-23 (69)
416 cd03221 ABCF_EF-3 ABCF_EF-3 E 84.7 1.9 4.1E-05 38.3 5.3 91 2-114 35-131 (144)
417 CHL00059 atpA ATP synthase CF1 84.7 4.5 9.7E-05 43.3 8.7 83 2-88 150-246 (485)
418 COG1192 Soj ATPases involved i 84.6 0.86 1.9E-05 45.2 3.4 37 2-40 12-48 (259)
419 PRK00279 adk adenylate kinase; 84.4 2.1 4.7E-05 41.0 5.9 17 1-17 8-24 (215)
420 cd01132 F1_ATPase_alpha F1 ATP 84.4 4.1 8.8E-05 40.2 7.8 87 2-93 78-180 (274)
421 PF12775 AAA_7: P-loop contain 84.4 0.72 1.6E-05 45.9 2.7 17 1-17 41-57 (272)
422 TIGR01313 therm_gnt_kin carboh 84.4 4.9 0.00011 36.5 8.0 17 1-17 6-22 (163)
423 PF07015 VirC1: VirC1 protein; 84.3 1.2 2.7E-05 42.4 4.0 37 2-41 11-47 (231)
424 PRK00625 shikimate kinase; Pro 84.3 0.65 1.4E-05 42.7 2.1 17 1-17 8-24 (173)
425 cd03230 ABC_DR_subfamily_A Thi 84.2 3.4 7.4E-05 38.0 6.9 106 2-114 35-159 (173)
426 PF03969 AFG1_ATPase: AFG1-lik 84.1 0.96 2.1E-05 47.0 3.5 90 2-108 71-166 (362)
427 PLN02459 probable adenylate ki 83.9 3.8 8.3E-05 40.2 7.3 17 1-17 37-53 (261)
428 PRK04040 adenylate kinase; Pro 83.8 2.7 5.9E-05 39.3 6.1 17 1-17 10-26 (188)
429 COG3598 RepA RecA-family ATPas 83.7 2.9 6.3E-05 41.6 6.3 53 1-53 97-157 (402)
430 PRK01184 hypothetical protein; 83.6 6.8 0.00015 36.4 8.8 16 1-17 9-24 (184)
431 TIGR03324 alt_F1F0_F1_al alter 83.5 4.9 0.00011 43.3 8.4 82 2-88 171-267 (497)
432 PRK06002 fliI flagellum-specif 83.5 3 6.5E-05 44.3 6.9 82 2-87 174-266 (450)
433 TIGR01039 atpD ATP synthase, F 83.4 2.2 4.7E-05 45.4 5.7 85 2-88 152-250 (461)
434 cd00046 DEXDc DEAD-like helica 83.4 3.8 8.3E-05 35.4 6.8 30 1-31 8-37 (144)
435 TIGR02655 circ_KaiC circadian 83.3 1.8 3.8E-05 47.3 5.3 79 1-85 271-363 (484)
436 cd03222 ABC_RNaseL_inhibitor T 83.1 3.4 7.3E-05 38.1 6.3 17 1-17 33-49 (177)
437 PRK09302 circadian clock prote 83.0 3.6 7.8E-05 45.4 7.7 79 2-86 282-374 (509)
438 TIGR03498 FliI_clade3 flagella 83.0 4.3 9.2E-05 43.0 7.8 82 2-87 149-242 (418)
439 PRK08149 ATP synthase SpaL; Va 83.0 3.8 8.1E-05 43.4 7.3 81 2-87 160-253 (428)
440 PRK08927 fliI flagellum-specif 82.9 5.6 0.00012 42.3 8.5 81 2-87 167-260 (442)
441 PTZ00185 ATPase alpha subunit; 82.9 5.2 0.00011 43.0 8.2 86 2-87 198-301 (574)
442 PF00910 RNA_helicase: RNA hel 82.8 0.85 1.8E-05 38.1 2.1 17 1-17 6-22 (107)
443 TIGR03263 guanyl_kin guanylate 82.7 2.9 6.3E-05 38.7 5.9 17 1-17 9-25 (180)
444 COG1136 SalX ABC-type antimicr 82.5 7.7 0.00017 37.1 8.6 79 39-117 119-210 (226)
445 COG1124 DppF ABC-type dipeptid 82.5 7.2 0.00016 37.4 8.2 51 65-116 149-208 (252)
446 COG1157 FliI Flagellar biosynt 82.4 6.3 0.00014 40.9 8.3 81 2-87 172-265 (441)
447 PRK02118 V-type ATP synthase s 82.4 3.4 7.5E-05 43.6 6.7 82 2-88 149-244 (436)
448 COG1111 MPH1 ERCC4-like helica 82.3 6.8 0.00015 41.5 8.7 50 1-53 37-86 (542)
449 PRK04196 V-type ATP synthase s 82.3 2.8 6.1E-05 44.9 6.2 86 2-87 152-252 (460)
450 cd02040 NifH NifH gene encodes 82.3 1.3 2.9E-05 44.1 3.7 36 2-40 10-45 (270)
451 COG3265 GntK Gluconate kinase 82.2 3.4 7.3E-05 36.2 5.4 41 2-51 4-44 (161)
452 TIGR02655 circ_KaiC circadian 82.2 2.1 4.6E-05 46.7 5.4 79 1-84 29-129 (484)
453 cd03238 ABC_UvrA The excision 82.2 7 0.00015 36.0 8.1 104 1-114 29-153 (176)
454 TIGR01447 recD exodeoxyribonuc 82.1 2 4.4E-05 47.8 5.3 30 78-107 262-293 (586)
455 TIGR00962 atpA proton transloc 81.9 6.2 0.00013 42.8 8.6 87 2-93 170-272 (501)
456 PRK14531 adenylate kinase; Pro 81.9 3.1 6.7E-05 38.7 5.7 17 1-17 10-26 (183)
457 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 81.8 7.6 0.00016 37.5 8.6 48 68-115 153-207 (224)
458 cd02029 PRK_like Phosphoribulo 81.8 26 0.00056 34.6 11.9 16 2-17 8-23 (277)
459 PRK10416 signal recognition pa 81.6 6 0.00013 40.4 8.1 81 1-85 122-206 (318)
460 PF02374 ArsA_ATPase: Anion-tr 81.6 1.2 2.6E-05 45.2 3.0 36 2-40 10-45 (305)
461 PRK13343 F0F1 ATP synthase sub 81.5 6 0.00013 42.8 8.3 82 2-88 171-267 (502)
462 PF03029 ATP_bind_1: Conserved 81.3 1.9 4E-05 42.1 4.1 29 1-32 4-32 (238)
463 COG1158 Rho Transcription term 81.3 7.4 0.00016 39.0 8.0 83 1-86 181-271 (422)
464 cd02042 ParA ParA and ParB of 81.2 1.5 3.3E-05 36.3 3.1 17 2-18 9-25 (104)
465 PRK06793 fliI flagellum-specif 81.1 11 0.00025 40.0 10.1 111 2-116 165-292 (432)
466 smart00370 LRR Leucine-rich re 80.9 1.2 2.6E-05 26.0 1.7 19 398-416 2-20 (26)
467 smart00369 LRR_TYP Leucine-ric 80.9 1.2 2.6E-05 26.0 1.7 19 398-416 2-20 (26)
468 COG2842 Uncharacterized ATPase 80.9 3.7 8E-05 40.5 5.9 81 1-93 102-185 (297)
469 COG0055 AtpD F0F1-type ATP syn 80.9 3.1 6.7E-05 42.2 5.4 96 2-99 156-269 (468)
470 PF06309 Torsin: Torsin; Inte 80.9 4.1 9E-05 34.8 5.5 17 1-17 61-77 (127)
471 PRK13231 nitrogenase reductase 80.8 1.9 4E-05 43.0 4.1 33 2-38 11-43 (264)
472 COG0003 ArsA Predicted ATPase 80.7 1.8 3.8E-05 44.0 3.9 41 1-44 10-50 (322)
473 PRK14527 adenylate kinase; Pro 80.7 1.8 3.9E-05 40.7 3.7 17 1-17 14-30 (191)
474 cd01129 PulE-GspE PulE/GspE Th 80.7 2.5 5.4E-05 42.0 4.9 93 2-108 89-181 (264)
475 PRK06936 type III secretion sy 80.7 7.1 0.00015 41.5 8.4 81 2-87 171-264 (439)
476 KOG2035 Replication factor C, 80.6 57 0.0012 32.2 13.4 112 78-195 130-261 (351)
477 cd02021 GntK Gluconate kinase 80.5 1.1 2.4E-05 40.1 2.1 17 1-17 7-23 (150)
478 PRK13539 cytochrome c biogenes 80.4 8 0.00017 36.8 8.1 59 68-129 138-203 (207)
479 PRK00131 aroK shikimate kinase 80.3 1.1 2.4E-05 41.2 2.1 17 1-17 12-28 (175)
480 PRK14532 adenylate kinase; Pro 80.3 1.1 2.5E-05 41.8 2.2 17 1-17 8-24 (188)
481 cd02038 FleN-like FleN is a me 80.2 7.3 0.00016 34.3 7.2 16 2-17 9-24 (139)
482 TIGR01448 recD_rel helicase, p 80.2 3.5 7.7E-05 47.3 6.5 96 1-107 346-450 (720)
483 COG1428 Deoxynucleoside kinase 80.2 1.1 2.5E-05 41.7 2.1 17 1-17 12-28 (216)
484 PRK06696 uridine kinase; Valid 80.1 7.6 0.00016 37.4 8.0 17 1-17 30-46 (223)
485 TIGR01069 mutS2 MutS2 family p 80.1 2.7 5.9E-05 48.5 5.5 114 74-195 401-523 (771)
486 PRK13185 chlL protochlorophyll 80.0 1.7 3.6E-05 43.5 3.5 34 2-38 11-44 (270)
487 smart00487 DEXDc DEAD-like hel 80.0 3.8 8.3E-05 38.1 5.8 31 78-108 132-168 (201)
488 PF13245 AAA_19: Part of AAA d 80.0 2.3 5E-05 32.9 3.5 17 1-17 18-34 (76)
489 PHA00729 NTP-binding motif con 79.8 1.2 2.5E-05 42.6 2.1 17 1-17 25-41 (226)
490 KOG0742 AAA+-type ATPase [Post 79.8 8.8 0.00019 39.5 8.2 115 1-140 392-528 (630)
491 KOG0651 26S proteasome regulat 79.8 3.2 7E-05 41.1 5.0 17 1-17 174-190 (388)
492 PRK09099 type III secretion sy 79.8 5.1 0.00011 42.7 7.0 83 2-88 172-266 (441)
493 cd01136 ATPase_flagellum-secre 79.6 11 0.00025 38.4 9.2 81 2-87 78-171 (326)
494 TIGR01425 SRP54_euk signal rec 79.5 5.3 0.00012 42.3 7.0 48 1-51 108-156 (429)
495 KOG0736 Peroxisome assembly fa 79.4 9.8 0.00021 42.6 9.0 45 119-167 555-599 (953)
496 PRK05922 type III secretion sy 79.4 6.3 0.00014 41.8 7.5 82 2-88 166-260 (434)
497 cd00227 CPT Chloramphenicol (C 79.3 1.2 2.7E-05 41.0 2.1 17 1-17 10-26 (175)
498 COG0467 RAD55 RecA-superfamily 79.2 1.7 3.6E-05 43.2 3.1 44 1-50 31-74 (260)
499 PRK14529 adenylate kinase; Pro 79.1 3.7 7.9E-05 39.4 5.2 83 1-92 8-94 (223)
500 cd02036 MinD Bacterial cell di 79.0 2 4.3E-05 39.6 3.4 31 1-34 8-38 (179)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=8.1e-76 Score=656.21 Aligned_cols=676 Identities=43% Similarity=0.720 Sum_probs=563.6
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
|||+||||||++++++...++.+||.++||.|+..++...++.+|++.++..+..+.....++....+.+.|+++||+||
T Consensus 187 MGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllv 266 (889)
T KOG4658|consen 187 MGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLV 266 (889)
T ss_pred CCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEE
Confidence 89999999999999999558999999999999999999999999999998877766777778899999999999999999
Q ss_pred EcCCCchhhhhhhcCcCCC---CcEEEEecCchhhhhc-ccCcceEeccCCChHhHHHHHHHHhcccccCCCCChHHHHH
Q 005367 81 LDDLWERVDLKKIGVPLPK---NSAVVFTTRFVDVCGR-MEARRTFKVECLSDEAAWELFREKVGEETIESHHSIPELAQ 156 (700)
Q Consensus 81 lDdv~~~~~~~~l~~~~~~---gs~iiiTTr~~~~~~~-~~~~~~~~l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 156 (700)
+||||+..+|+.++.++|. |++|++|||+.+||.. +++...++++.|+++|||+||.+.++.......+..+++|+
T Consensus 267 LDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak 346 (889)
T KOG4658|consen 267 LDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAK 346 (889)
T ss_pred EecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHH
Confidence 9999999999999999988 6999999999999988 67788999999999999999999999887677777999999
Q ss_pred HHHHHhCCCchHHHHHHHHhccCCChHHHHHHHHHHHhh-hhhccCcchhhccchhcccCCCCccchhHHHhhhcCCCCC
Q 005367 157 TVAKECGGLPLALITIGRAMAYKKTPEEWRYAIEVLRRS-ASEFADLGKEVYPLLKFSYDCLPNDAIRSCFLYCCLYPED 235 (700)
Q Consensus 157 ~i~~~~~g~Plai~~~~~~l~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~l~~sy~~L~~~~~~~~~l~~~~fp~~ 235 (700)
+++++|+|+|+|++++|+.++.+++..+|+.+...+... ..+.+...+.+..++.+||+.|++ ++|.||+|||.||++
T Consensus 347 ~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~-~lK~CFLycalFPED 425 (889)
T KOG4658|consen 347 EVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPE-ELKSCFLYCALFPED 425 (889)
T ss_pred HHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhH-HHHHHHHhhccCCcc
Confidence 999999999999999999999999999999999999887 555566677999999999999996 999999999999999
Q ss_pred ceeeHHHHHHHHHHcCCCCccc--cccchhhHHHHHHHHHhhhhcccc----cCcEeehHHHHHHHHHHHhhhhhcccce
Q 005367 236 ESIDKRDLIDCWICEGFLDEAK--FGTQNQGYYIVGTLVHACLLEEVE----EDQVKMHDVIRDMALWITCEIEKEKEGF 309 (700)
Q Consensus 236 ~~i~~~~l~~~w~~~g~~~~~~--~~~~~~~~~~~~~L~~~sli~~~~----~~~~~~h~li~~~~~~~~~~~~~~~~~~ 309 (700)
+.|+...|+.+|+|+||+.... ..+++.++.++.+|++++++.... ..+|+|||+||++|.+++++.....++.
T Consensus 426 ~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~ 505 (889)
T KOG4658|consen 426 YEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQ 505 (889)
T ss_pred cccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccce
Confidence 9999999999999999998844 788999999999999999998863 4899999999999999999877766776
Q ss_pred EEEcCCCCCCCCccccccccceeeeeccccccCCCCCCCCCceeEEEecCCC--CcccccccccCCCcceEEEccCCccc
Q 005367 310 LVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNP--LTTIAGGFFQSMPCLTVLKMSGNETL 387 (700)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~L~~L~L~~~~~~ 387 (700)
++-.+.+...+ +...++..++++++.++.+..++.-..+++|++|-+.+|. +..+...+|..+|.|++|||++|...
T Consensus 506 iv~~~~~~~~~-~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l 584 (889)
T KOG4658|consen 506 IVSDGVGLSEI-PQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL 584 (889)
T ss_pred EEECCcCcccc-ccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc
Confidence 66666566665 4455668999999999999999988888899999999996 77888888999999999999999999
Q ss_pred ccCCcccccccccceeccccCcccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccc
Q 005367 388 RQLPMGISKLVSLQLLDISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHEN 467 (700)
Q Consensus 388 ~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 467 (700)
..+|..++.+.+||+|+++++.++++|.+++++..|.+|++..+..+...|. ++..+++|++|.+.... ...+..
T Consensus 585 ~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~----~~~~~~ 659 (889)
T KOG4658|consen 585 SKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSA----LSNDKL 659 (889)
T ss_pred CcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccc-hhhhcccccEEEeeccc----cccchh
Confidence 9999999999999999999999999999999999999999998877666654 36679999999998654 233455
Q ss_pred hHHHHhcCCCcceEEEEEecchhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEeccccccceeecc
Q 005367 468 VAEELLGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGLKIDY 547 (700)
Q Consensus 468 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~ 547 (700)
...++.++++|+.+............+.....+......+.+.++ ........+..+++|++|.|.+|...+.. ..+
T Consensus 660 ~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~--~~~~~~~~~~~l~~L~~L~i~~~~~~e~~-~~~ 736 (889)
T KOG4658|consen 660 LLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGC--SKRTLISSLGSLGNLEELSILDCGISEIV-IEW 736 (889)
T ss_pred hHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccc--ccceeecccccccCcceEEEEcCCCchhh-ccc
Confidence 677788888888888876555333444444444445555555442 22333356778899999999999876521 112
Q ss_pred cccccccCCccccCCccEEeeecCcCcccccccccCCCCceEEeeeccccccccccccCCC-CCCccCCCCCCCCcccee
Q 005367 548 KDMVQKSRQPYVFRSLEEVTVRFCRKLKHLTFLVFAPNLKSISVCLCDDMEEIISAGEFDD-IPEMTGIISSPFAKLQRL 626 (700)
Q Consensus 548 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~L~~L 626 (700)
... ......|+++.++.+.+|.....+.|.-..|+|+.|.+..|..++++++...... .. .....|+++..+
T Consensus 737 ~~~---~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~----~~i~~f~~~~~l 809 (889)
T KOG4658|consen 737 EES---LIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELK----ELILPFNKLEGL 809 (889)
T ss_pred ccc---cchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcc----cEEecccccccc
Confidence 110 0000137799999999999999999998999999999999999999987543221 11 123455666666
Q ss_pred -eccCcccccccccCCCCCCCccEEEEcCCCCCCCCCCCCCCc--c--eEeecc--hhhhhcCccccccccccc
Q 005367 627 -RLEGLGRLKSIYWKPLPLPRLKELEVRGCDSLEKLPLDSNGR--R--ILIRGH--EDWWRRLQWEDEATQNAF 693 (700)
Q Consensus 627 -~l~~c~~l~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~--~--~~i~~~--~~~~~~l~~~~~~~~~~~ 693 (700)
.+.+.+++.++.+....++.|+++.+..||++.++|...... . -.+-.+ ..|.++..|+++.+...+
T Consensus 810 ~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 810 RMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred eeeecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceeecCCccceeeEEehhhhhhhhc
Confidence 466666777777666678889999999999999999886555 1 223333 445789999999887765
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.5e-56 Score=529.82 Aligned_cols=604 Identities=21% Similarity=0.286 Sum_probs=414.0
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEe---CCcc-----------C-HHHHHHHHHHHcCCCCCCCCCccHHHHH
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVV---SKDL-----------Q-LEKIQETIRKKIGLCNDSWKNKSLEEKA 65 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~---~~~~-----------~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 65 (700)
|||+||||||+++|++. ...|+..+|++. .... . ...++..++..+..... .... ..
T Consensus 215 ~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~-~~~~----~~ 286 (1153)
T PLN03210 215 SSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKD-IKIY----HL 286 (1153)
T ss_pred CCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCC-cccC----CH
Confidence 89999999999999987 778999888752 1110 0 12344445544422110 0111 12
Q ss_pred HHHHHHhccCcEEEEEcCCCchhhhhhhcCc---CCCCcEEEEecCchhhhhcccCcceEeccCCChHhHHHHHHHHhcc
Q 005367 66 QDIFKTLSKKKFALLLDDLWERVDLKKIGVP---LPKNSAVVFTTRFVDVCGRMEARRTFKVECLSDEAAWELFREKVGE 142 (700)
Q Consensus 66 ~~l~~~l~~~r~LlVlDdv~~~~~~~~l~~~---~~~gs~iiiTTr~~~~~~~~~~~~~~~l~~L~~~~a~~l~~~~~~~ 142 (700)
..++++++++|+||||||||+.++|+.+... +++|++||||||+..++..++....|+|+.+++++|++||.++|++
T Consensus 287 ~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~ 366 (1153)
T PLN03210 287 GAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFK 366 (1153)
T ss_pred HHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcC
Confidence 4577889999999999999999998888553 4569999999999999877767789999999999999999999987
Q ss_pred cccCCCCChHHHHHHHHHHhCCCchHHHHHHHHhccCCChHHHHHHHHHHHhhhhhccCcchhhccchhcccCCCCccch
Q 005367 143 ETIESHHSIPELAQTVAKECGGLPLALITIGRAMAYKKTPEEWRYAIEVLRRSASEFADLGKEVYPLLKFSYDCLPNDAI 222 (700)
Q Consensus 143 ~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~ 222 (700)
.. .+++..++++.+|+++|+|+|||++++|++|++ ++...|+..++++.... ...+..++++||+.|+++..
T Consensus 367 ~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~~L~~~~------~~~I~~~L~~SYd~L~~~~~ 438 (1153)
T PLN03210 367 KN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLPRLRNGL------DGKIEKTLRVSYDGLNNKKD 438 (1153)
T ss_pred CC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHHHHHhCc------cHHHHHHHHHhhhccCccch
Confidence 65 445568899999999999999999999999986 68899999999887643 24799999999999987468
Q ss_pred hHHHhhhcCCCCCceeeHHHHHHHHHHcCCCCccccccchhhHHHHHHHHHhhhhcccccCcEeehHHHHHHHHHHHhhh
Q 005367 223 RSCFLYCCLYPEDESIDKRDLIDCWICEGFLDEAKFGTQNQGYYIVGTLVHACLLEEVEEDQVKMHDVIRDMALWITCEI 302 (700)
Q Consensus 223 ~~~~l~~~~fp~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~~L~~~sli~~~~~~~~~~h~li~~~~~~~~~~~ 302 (700)
|.||+++|+|+.+++++. +..|.+.+... ++..++.|++++|++.. .+.+.||+++|++++.++.++
T Consensus 439 k~~Fl~ia~ff~~~~~~~---v~~~l~~~~~~---------~~~~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~ 505 (1153)
T PLN03210 439 KAIFRHIACLFNGEKVND---IKLLLANSDLD---------VNIGLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQ 505 (1153)
T ss_pred hhhhheehhhcCCCCHHH---HHHHHHhcCCC---------chhChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhh
Confidence 999999999998876543 45555544332 12238899999999875 568999999999999998764
Q ss_pred h--hcccceEEEc-----------------C-----CCC---------------------------------CCCCcccc
Q 005367 303 E--KEKEGFLVYA-----------------G-----SGL---------------------------------TEAPADVR 325 (700)
Q Consensus 303 ~--~~~~~~~~~~-----------------~-----~~~---------------------------------~~~~~~~~ 325 (700)
. +..+.++... + ... ..+|..+.
T Consensus 506 ~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~ 585 (1153)
T PLN03210 506 SNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFD 585 (1153)
T ss_pred cCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchh
Confidence 3 1111122110 0 000 01222222
Q ss_pred cc-ccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccccccccceec
Q 005367 326 GW-EMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQLLD 404 (700)
Q Consensus 326 ~~-~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~ 404 (700)
.+ .+|+.|.+.++.++.+|.-....+|+.|++.++.+..++.. +..+++|++|+|+++..+..+| .++.+++|++|+
T Consensus 586 ~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~ 663 (1153)
T PLN03210 586 YLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG-VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLK 663 (1153)
T ss_pred hcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc-cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEE
Confidence 22 24666666666666677544567888888888887766555 5678888888888886677777 477788888888
Q ss_pred cccC-cccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcceEEE
Q 005367 405 ISYT-RVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEI 483 (700)
Q Consensus 405 l~~~-~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 483 (700)
+++| .+..+|..++++++|+.|++++|..+..+|.. + ++++|+.|++++|..... .+. ..++|+.|++
T Consensus 664 L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~------~p~---~~~nL~~L~L 732 (1153)
T PLN03210 664 LSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKS------FPD---ISTNISWLDL 732 (1153)
T ss_pred ecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCccc------ccc---ccCCcCeeec
Confidence 8886 56688888888888888888888878888875 3 788888888887753211 111 1356777777
Q ss_pred EEecchhhHhhhhcccccccchhhhccccCCCceee-ec-----CcCccccccEEEEeccccccceeecccccccccCCc
Q 005367 484 TFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESID-VA-----GLADLEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQP 557 (700)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~-----~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 557 (700)
+.|.+..++.... .++|..|.+.++....... +. ....+++|+.|++++|..+..++.. +
T Consensus 733 ~~n~i~~lP~~~~----l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s-i--------- 798 (1153)
T PLN03210 733 DETAIEEFPSNLR----LENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS-I--------- 798 (1153)
T ss_pred CCCcccccccccc----ccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh-h---------
Confidence 7776655443221 1244444444322111000 00 0011245666666655544433222 1
Q ss_pred cccCCccEEeeecCcCcccccccccCCCCceEEeeecccccccccc-----------ccCCCCCCccCCCCCCCCcccee
Q 005367 558 YVFRSLEEVTVRFCRKLKHLTFLVFAPNLKSISVCLCDDMEEIISA-----------GEFDDIPEMTGIISSPFAKLQRL 626 (700)
Q Consensus 558 ~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~-----------~~~~~~~~~~~~~~~~~~~L~~L 626 (700)
..+++|+.|++++|+.+..+|....+++|+.|+|++|..+..++.. +...++| ..+..+++|+.|
T Consensus 799 ~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP----~si~~l~~L~~L 874 (1153)
T PLN03210 799 QNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVP----WWIEKFSNLSFL 874 (1153)
T ss_pred hCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccCh----HHHhcCCCCCEE
Confidence 1355666666666655555554445566666666666555433211 1112233 356788899999
Q ss_pred eccCcccccccccCCCCCCCccEEEEcCCCCCCCCCCC
Q 005367 627 RLEGLGRLKSIYWKPLPLPRLKELEVRGCDSLEKLPLD 664 (700)
Q Consensus 627 ~l~~c~~l~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~ 664 (700)
++.+|++++.++.....+++|+.+++++|++|++++..
T Consensus 875 ~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~ 912 (1153)
T PLN03210 875 DMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWN 912 (1153)
T ss_pred ECCCCCCcCccCcccccccCCCeeecCCCcccccccCC
Confidence 99999999998887777899999999999999877653
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3.4e-39 Score=328.35 Aligned_cols=254 Identities=38% Similarity=0.693 Sum_probs=208.0
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCC-CCccHHHHHHHHHHHhccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSW-KNKSLEEKAQDIFKTLSKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~r~Ll 79 (700)
|||+|||+||++++++. ..+++|+.++||+++...+..+++..|+++++...... ...+.++....+.+.|.++++||
T Consensus 27 ~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~Ll 105 (287)
T PF00931_consen 27 MGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELLKDKRCLL 105 (287)
T ss_dssp STTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHHCCTSEEE
T ss_pred CCcCCcceeeeeccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccee
Confidence 79999999999999995 35889999999999999988999999999998775443 56788889999999999999999
Q ss_pred EEcCCCchhhhhhhcCcCCC---CcEEEEecCchhhhhcccC-cceEeccCCChHhHHHHHHHHhcccccCCCCChHHHH
Q 005367 80 LLDDLWERVDLKKIGVPLPK---NSAVVFTTRFVDVCGRMEA-RRTFKVECLSDEAAWELFREKVGEETIESHHSIPELA 155 (700)
Q Consensus 80 VlDdv~~~~~~~~l~~~~~~---gs~iiiTTr~~~~~~~~~~-~~~~~l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~ 155 (700)
||||||+..+|+.+...++. |++||||||+..++..+.. ...|++++|+++||++||.+.++.......+..++.+
T Consensus 106 VlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~ 185 (287)
T PF00931_consen 106 VLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLA 185 (287)
T ss_dssp EEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHH
T ss_pred eeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999888776554 8999999999998876654 6789999999999999999999765534456668899
Q ss_pred HHHHHHhCCCchHHHHHHHHhccCCChHHHHHHHHHHHhhhhhccCcchhhccchhcccCCCCccchhHHHhhhcCCCCC
Q 005367 156 QTVAKECGGLPLALITIGRAMAYKKTPEEWRYAIEVLRRSASEFADLGKEVYPLLKFSYDCLPNDAIRSCFLYCCLYPED 235 (700)
Q Consensus 156 ~~i~~~~~g~Plai~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~~~~~l~~~~fp~~ 235 (700)
++|+++|+|+|+||+++|++++.+.+...|...++.+.....+......++..++.+||+.|++ ++|.||+||++||++
T Consensus 186 ~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~f~~L~~f~~~ 264 (287)
T PF00931_consen 186 KEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPD-ELRRCFLYLSIFPEG 264 (287)
T ss_dssp HHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHT-CCHHHHHHGGGSGTT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCc-cHHHHHhhCcCCCCC
Confidence 9999999999999999999997655788999999988877655444567999999999999999 899999999999999
Q ss_pred ceeeHHHHHHHHHHcCCCCcc
Q 005367 236 ESIDKRDLIDCWICEGFLDEA 256 (700)
Q Consensus 236 ~~i~~~~l~~~w~~~g~~~~~ 256 (700)
+.|+.+.++.+|+++|++...
T Consensus 265 ~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 265 VPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp S-EEHHHHHHHHTT-HHTC--
T ss_pred ceECHHHHHHHHHHCCCCccc
Confidence 999999999999999998753
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=1e-22 Score=242.28 Aligned_cols=324 Identities=19% Similarity=0.198 Sum_probs=214.3
Q ss_pred ceEEEcCCCCC-CCCcccc-ccccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCc
Q 005367 308 GFLVYAGSGLT-EAPADVR-GWEMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNE 385 (700)
Q Consensus 308 ~~~~~~~~~~~-~~~~~~~-~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 385 (700)
..+.+.++.+. .+|..+. .+++|++|++++|.+........+++|++|++++|.+.+..+..++.+++|++|++++|.
T Consensus 96 ~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~ 175 (968)
T PLN00113 96 QTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV 175 (968)
T ss_pred CEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCc
Confidence 44556666654 5665544 778888888888887654445667888888888888776666667888888888888886
Q ss_pred ccccCCcccccccccceeccccCccc-ccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCc
Q 005367 386 TLRQLPMGISKLVSLQLLDISYTRVR-ELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSW 464 (700)
Q Consensus 386 ~~~~lp~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 464 (700)
....+|..++++++|++|++++|.+. .+|..++++++|+.|++++|...+.+|.. ++++++|++|++++|.+..
T Consensus 176 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~---- 250 (968)
T PLN00113 176 LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTG---- 250 (968)
T ss_pred ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceecc----
Confidence 56677888888888888888888777 67888888888888888888766667766 7888888888888776532
Q ss_pred ccchHHHHhcCCCcceEEEEEecchhh-HhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEeccccccce
Q 005367 465 HENVAEELLGLKYLEVLEITFRRFEAY-QTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGL 543 (700)
Q Consensus 465 ~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~ 543 (700)
..+..++.+++|+.|+++.|.+.+. +... ....+|+.|++++|......+ ..+.++++|+.|++++|......
T Consensus 251 --~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~l~~n~~~~~~ 324 (968)
T PLN00113 251 --PIPSSLGNLKNLQYLFLYQNKLSGPIPPSI---FSLQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFSNNFTGKI 324 (968)
T ss_pred --ccChhHhCCCCCCEEECcCCeeeccCchhH---hhccCcCEEECcCCeeccCCC-hhHcCCCCCcEEECCCCccCCcC
Confidence 3566778888888888888776432 1111 123467777887765322222 34556778888888776543322
Q ss_pred eecccccccccCCccccCCccEEeeecCcCccccc-ccccCCCCceEEeeeccccccccccc---------------cCC
Q 005367 544 KIDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLT-FLVFAPNLKSISVCLCDDMEEIISAG---------------EFD 607 (700)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~---------------~~~ 607 (700)
+..+ ..+++|+.|++++|.....+| .++.+++|+.|+++++.....++..- ..+
T Consensus 325 -~~~~---------~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~ 394 (968)
T PLN00113 325 -PVAL---------TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEG 394 (968)
T ss_pred -ChhH---------hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecc
Confidence 2222 246778888887775443444 46777778888777654322111100 001
Q ss_pred CCCCccCCCCCCCCccceeeccCcccccccccCCCCCCCccEEEEcCCC
Q 005367 608 DIPEMTGIISSPFAKLQRLRLEGLGRLKSIYWKPLPLPRLKELEVRGCD 656 (700)
Q Consensus 608 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~C~ 656 (700)
.+| ..+..+++|+.|++++|.-...++.....+++|+.|++++|.
T Consensus 395 ~~p----~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 395 EIP----KSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439 (968)
T ss_pred cCC----HHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc
Confidence 122 345567788888888765444455444456777777776653
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=1.9e-22 Score=239.88 Aligned_cols=320 Identities=19% Similarity=0.177 Sum_probs=155.0
Q ss_pred EEEcCCCCC-CCCccccccccceeeeecccccc-CCC-CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcc
Q 005367 310 LVYAGSGLT-EAPADVRGWEMGRRLSLMKNSIK-NLP-TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNET 386 (700)
Q Consensus 310 ~~~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~-~l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 386 (700)
+.+.++.+. .+|..+..+++|+.|++++|.+. .+| .+.++++|++|++++|.+.+..+..+.++++|++|+|++|..
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 333343333 34445555556666666655543 233 345555666666666555554444455556666666665544
Q ss_pred cccCCcccccccccceeccccCccc-ccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcc
Q 005367 387 LRQLPMGISKLVSLQLLDISYTRVR-ELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWH 465 (700)
Q Consensus 387 ~~~lp~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~ 465 (700)
...+|..++.+++|++|++++|++. .+|..++++++|+.|++++|...+.+|.. +.++++|+.|++++|.+..
T Consensus 225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~----- 298 (968)
T PLN00113 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IFSLQKLISLDLSDNSLSG----- 298 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh-HhhccCcCEEECcCCeecc-----
Confidence 4445555555666666666665554 45555555666666666555444444444 4555566666655554321
Q ss_pred cchHHHHhcCCCcceEEEEEecchhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEeccccccceee
Q 005367 466 ENVAEELLGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGLKI 545 (700)
Q Consensus 466 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~ 545 (700)
..+..+..+++|+.|++++|.+..... ......++|+.|+++++......+ ..+..+++|+.|++++|..... .+
T Consensus 299 -~~p~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~~~~L~~L~Ls~n~l~~~-~p 373 (968)
T PLN00113 299 -EIPELVIQLQNLEILHLFSNNFTGKIP--VALTSLPRLQVLQLWSNKFSGEIP-KNLGKHNNLTVLDLSTNNLTGE-IP 373 (968)
T ss_pred -CCChhHcCCCCCcEEECCCCccCCcCC--hhHhcCCCCCEEECcCCCCcCcCC-hHHhCCCCCcEEECCCCeeEee-CC
Confidence 234445555666666665555432110 011112355555555554322222 2344455666666655542211 11
Q ss_pred cccccccccCCccccCCccEEeeecCcCccccc-ccccCCCCceEEeeeccccccccccccCCCCCCccCCCCCCCCccc
Q 005367 546 DYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLT-FLVFAPNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPFAKLQ 624 (700)
Q Consensus 546 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~ 624 (700)
.... .+++|++|++.+|+....+| .++.+++|+.|++++|.-...+ | ..+..+++|+
T Consensus 374 ~~~~---------~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~---------p----~~~~~l~~L~ 431 (968)
T PLN00113 374 EGLC---------SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL---------P----SEFTKLPLVY 431 (968)
T ss_pred hhHh---------CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC---------C----hhHhcCCCCC
Confidence 1111 24455555555554332322 3555666666666654322111 1 2334455555
Q ss_pred eeeccCcccccccccCCCCCCCccEEEEcCCCCCCCCC
Q 005367 625 RLRLEGLGRLKSIYWKPLPLPRLKELEVRGCDSLEKLP 662 (700)
Q Consensus 625 ~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~C~~L~~lp 662 (700)
.|+++++.-...++.....+++|++|++++|.-...+|
T Consensus 432 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p 469 (968)
T PLN00113 432 FLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP 469 (968)
T ss_pred EEECcCCcccCccChhhccCCCCcEEECcCceeeeecC
Confidence 55555543222333223344555555555554433343
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=1.8e-20 Score=222.99 Aligned_cols=280 Identities=20% Similarity=0.274 Sum_probs=153.5
Q ss_pred cceEEEccCCcccccCCcccccccccceeccccCcccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeecc
Q 005367 375 CLTVLKMSGNETLRQLPMGISKLVSLQLLDISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMF 454 (700)
Q Consensus 375 ~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~ 454 (700)
+|+.|.+.++ .+..+|..+ .+.+|+.|+++++++..+|..+..+++|+.|++++|..+..+|. +..+++|+.|++.
T Consensus 590 ~Lr~L~~~~~-~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~ 665 (1153)
T PLN03210 590 KLRLLRWDKY-PLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLS 665 (1153)
T ss_pred ccEEEEecCC-CCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEec
Confidence 3555555555 345555444 23555555555555555555555555555555555544444443 4455555555555
Q ss_pred ccCcccccCcccchHHHHhcCCCcceEEEEEec-chhhHhhhhcccccccchhhhccccCCCceee--------------
Q 005367 455 ATGLISFYSWHENVAEELLGLKYLEVLEITFRR-FEAYQTFLSSQKLRSCTQALFLHEFDREESID-------------- 519 (700)
Q Consensus 455 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------------- 519 (700)
+|... ...|..+..+++|+.|++++|. +..++... ..++|+.|.+++|..+...+
T Consensus 666 ~c~~L------~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i----~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n 735 (1153)
T PLN03210 666 DCSSL------VELPSSIQYLNKLEDLDMSRCENLEILPTGI----NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDET 735 (1153)
T ss_pred CCCCc------cccchhhhccCCCCEEeCCCCCCcCccCCcC----CCCCCCEEeCCCCCCccccccccCCcCeeecCCC
Confidence 44321 1234445555555555555432 22222111 12344445555443322211
Q ss_pred ----ecCcCccccccEEEEeccccccceeecccccccccCCccccCCccEEeeecCcCccccc-ccccCCCCceEEeeec
Q 005367 520 ----VAGLADLEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLT-FLVFAPNLKSISVCLC 594 (700)
Q Consensus 520 ----~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~ 594 (700)
+.....+++|++|.+.++.... +. ...... .......+++|++|++++|+.+..+| .++.+++|+.|+|++|
T Consensus 736 ~i~~lP~~~~l~~L~~L~l~~~~~~~-l~-~~~~~l-~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C 812 (1153)
T PLN03210 736 AIEEFPSNLRLENLDELILCEMKSEK-LW-ERVQPL-TPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENC 812 (1153)
T ss_pred ccccccccccccccccccccccchhh-cc-cccccc-chhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCC
Confidence 0000123445555444432111 00 000000 00001235799999999998888776 5899999999999999
Q ss_pred cccccccccccCCCCCCccCCCCCCCCccceeeccCccccc--------------------ccccCCCCCCCccEEEEcC
Q 005367 595 DDMEEIISAGEFDDIPEMTGIISSPFAKLQRLRLEGLGRLK--------------------SIYWKPLPLPRLKELEVRG 654 (700)
Q Consensus 595 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~--------------------~l~~~~~~~~~L~~L~i~~ 654 (700)
..++.++.. ..+++|+.|++++|..+. .+|.....+++|++|++++
T Consensus 813 ~~L~~LP~~--------------~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~ 878 (1153)
T PLN03210 813 INLETLPTG--------------INLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNG 878 (1153)
T ss_pred CCcCeeCCC--------------CCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCC
Confidence 988876431 145566666666665544 3444445689999999999
Q ss_pred CCCCCCCCCCCCCc----ceEeecchhhhhcCcccc
Q 005367 655 CDSLEKLPLDSNGR----RILIRGHEDWWRRLQWED 686 (700)
Q Consensus 655 C~~L~~lp~~~~~~----~~~i~~~~~~~~~l~~~~ 686 (700)
|++|+.+|...... .+.+.+|+.+. .+.|..
T Consensus 879 C~~L~~l~~~~~~L~~L~~L~l~~C~~L~-~~~l~~ 913 (1153)
T PLN03210 879 CNNLQRVSLNISKLKHLETVDFSDCGALT-EASWNG 913 (1153)
T ss_pred CCCcCccCcccccccCCCeeecCCCcccc-cccCCC
Confidence 99999999876554 67888998773 344543
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=4.9e-23 Score=209.61 Aligned_cols=326 Identities=20% Similarity=0.266 Sum_probs=205.4
Q ss_pred cceEEEcCCCCCCCCccccccccceeeeeccccccCCC-CCCCCCceeEEEecCCCC--cccccccccCCCcceEEEccC
Q 005367 307 EGFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLP-TIPTCPHLLTLFLNRNPL--TTIAGGFFQSMPCLTVLKMSG 383 (700)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~L~~L~L~~ 383 (700)
..|+.+...++..+|..+..+.+|++|++.+|++.++- .+..++.||.+.+..|++ .++++++| .+..|..|||+.
T Consensus 34 ~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLSh 112 (1255)
T KOG0444|consen 34 MTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSH 112 (1255)
T ss_pred eeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecch
Confidence 46778888888888888888888888888888877655 566667777777766653 34455533 666666666666
Q ss_pred CcccccCCcccccccccceeccccCcccccchh-hhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCccc--
Q 005367 384 NETLRQLPMGISKLVSLQLLDISYTRVRELPEE-LKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLIS-- 460 (700)
Q Consensus 384 ~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~-- 460 (700)
| .+.+.|..+..-+++-.|++++|+|.++|.. +-++..|-.|+++.| .+..+|+. +..+..|+.|.+++|++.-
T Consensus 113 N-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NPL~hfQ 189 (1255)
T KOG0444|consen 113 N-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNPLNHFQ 189 (1255)
T ss_pred h-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCChhhHHH
Confidence 6 5666666666666666666666666666654 335566666666654 34555655 5556666666666555311
Q ss_pred -----------------ccCcccchHHHHhcCCCcceEEEEEecchhhHhhhhcccccccchhhhccccCCCceeeecCc
Q 005367 461 -----------------FYSWHENVAEELLGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGL 523 (700)
Q Consensus 461 -----------------~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 523 (700)
........|..+..+.||+.++++.|++..+++...... +|+.|+|+++.. +... ...
T Consensus 190 LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~---~LrrLNLS~N~i-teL~-~~~ 264 (1255)
T KOG0444|consen 190 LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLR---NLRRLNLSGNKI-TELN-MTE 264 (1255)
T ss_pred HhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhh---hhheeccCcCce-eeee-ccH
Confidence 011123445556666666677777666666555444332 566666666542 2221 123
Q ss_pred CccccccEEEEeccccccceeecccccccccCCccccCCccEEeeecCc-Cccccc-ccccCCCCceEEeeecccccccc
Q 005367 524 ADLEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEVTVRFCR-KLKHLT-FLVFAPNLKSISVCLCDDMEEII 601 (700)
Q Consensus 524 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~l~~l~-~l~~l~~L~~L~l~~~~~l~~~~ 601 (700)
....+|++|+++.+. +.. -++..+ .+++|++|.+.++. ....+| .++.+.+|+++...+ ++++-+
T Consensus 265 ~~W~~lEtLNlSrNQ-Lt~-LP~avc---------KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElV- 331 (1255)
T KOG0444|consen 265 GEWENLETLNLSRNQ-LTV-LPDAVC---------KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELV- 331 (1255)
T ss_pred HHHhhhhhhccccch-hcc-chHHHh---------hhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccC-
Confidence 334566666666654 222 223333 46677777776653 223344 477777777776665 233332
Q ss_pred ccccCCCCCCccCCCCCCCCccceeeccCcccccccccCCCCCCCccEEEEcCCCCCCCCCCCCCC
Q 005367 602 SAGEFDDIPEMTGIISSPFAKLQRLRLEGLGRLKSIYWKPLPLPRLKELEVRGCDSLEKLPLDSNG 667 (700)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~ 667 (700)
| ..+..+++|+.|+|+. +.|-.+|....-+|-|+.|+++..|+|.-=|.+.-+
T Consensus 332 --------P----EglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~da 384 (1255)
T KOG0444|consen 332 --------P----EGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPPKPNDA 384 (1255)
T ss_pred --------c----hhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCCCcchh
Confidence 2 4788899999999974 688888877667899999999999999877766544
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=2.8e-21 Score=195.79 Aligned_cols=314 Identities=22% Similarity=0.270 Sum_probs=231.5
Q ss_pred eEEEcCCCCCCCCccccccccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcc
Q 005367 309 FLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNET 386 (700)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 386 (700)
-+.+..+.++.+|.......++++|++.+|-+..+. .+..++.||+|||+.|.+..++...|..-.++++|+|++| .
T Consensus 106 ~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N-~ 184 (873)
T KOG4194|consen 106 EVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASN-R 184 (873)
T ss_pred eeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccc-c
Confidence 355667777778776666677888888888888776 6778888889999988888888777777778889999988 4
Q ss_pred cccC-CcccccccccceeccccCcccccchh-hhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCc
Q 005367 387 LRQL-PMGISKLVSLQLLDISYTRVRELPEE-LKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSW 464 (700)
Q Consensus 387 ~~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 464 (700)
++.+ ...|..+.+|.+|.++.|.++.+|.. +.++++|+.|++..|. +.....-.+.++++|+.|.+..|.+....+
T Consensus 185 It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~D- 262 (873)
T KOG4194|consen 185 ITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDD- 262 (873)
T ss_pred ccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCcccccC-
Confidence 4444 45677778888888999999888865 5558999999988874 343323337788888888888887643211
Q ss_pred ccchHHHHhcCCCcceEEEEEecchhhHh-hhhcccccccchhhhccccCCCceeeecCcCccccccEEEEeccccccce
Q 005367 465 HENVAEELLGLKYLEVLEITFRRFEAYQT-FLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGL 543 (700)
Q Consensus 465 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~ 543 (700)
..+..|.++++|+|+.|+++.+.. ++.. .+.|+.|+++.+. +....+.+...+++|++|+++++. ++.+
T Consensus 263 -----G~Fy~l~kme~l~L~~N~l~~vn~g~lfg---Lt~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~N~-i~~l 332 (873)
T KOG4194|consen 263 -----GAFYGLEKMEHLNLETNRLQAVNEGWLFG---LTSLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSSNR-ITRL 332 (873)
T ss_pred -----cceeeecccceeecccchhhhhhcccccc---cchhhhhccchhh-hheeecchhhhcccceeEeccccc-cccC
Confidence 135678899999999998876543 2222 3478888888876 455555677778999999998876 4445
Q ss_pred eecccccccccCCccccCCccEEeeecCcCccccc--ccccCCCCceEEeeeccccccccccccCCCCCCccCCCCCCCC
Q 005367 544 KIDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLT--FLVFAPNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPFA 621 (700)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 621 (700)
+...+. .+..|+.|.|+++ .+.++. .+..+.+|++|+|++. .+.-.+.. .+..+.+++
T Consensus 333 ~~~sf~---------~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N-~ls~~IED---------aa~~f~gl~ 392 (873)
T KOG4194|consen 333 DEGSFR---------VLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSN-ELSWCIED---------AAVAFNGLP 392 (873)
T ss_pred ChhHHH---------HHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCC-eEEEEEec---------chhhhccch
Confidence 555544 6889999999996 666654 3667899999999874 33322221 124667899
Q ss_pred ccceeeccCcccccccccC-CCCCCCccEEEEcCCC
Q 005367 622 KLQRLRLEGLGRLKSIYWK-PLPLPRLKELEVRGCD 656 (700)
Q Consensus 622 ~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~i~~C~ 656 (700)
+|++|.+.+ +++++++.. ...+++|++|++.+.+
T Consensus 393 ~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 393 SLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred hhhheeecC-ceeeecchhhhccCcccceecCCCCc
Confidence 999999998 589999865 3358999999997764
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=1.9e-21 Score=197.04 Aligned_cols=350 Identities=18% Similarity=0.239 Sum_probs=259.8
Q ss_pred cceEEEcCCCCCCCC-ccccccccceeeeeccccccCCCCCCCCC-ceeEEEecCCCCcccccccccCCCcceEEEccCC
Q 005367 307 EGFLVYAGSGLTEAP-ADVRGWEMGRRLSLMKNSIKNLPTIPTCP-HLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGN 384 (700)
Q Consensus 307 ~~~~~~~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~l~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~ 384 (700)
...+.+.++.+..+. ..+.++.+|+.+.+.+|.++.+|.+.... +|..|+|.+|.|..+....+..++.|+.|||+.|
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 344666777777663 45678899999999999999999887654 5999999999999888888889999999999999
Q ss_pred cccccCCc-ccccccccceeccccCcccccch-hhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCccccc
Q 005367 385 ETLRQLPM-GISKLVSLQLLDISYTRVRELPE-ELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFY 462 (700)
Q Consensus 385 ~~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~ 462 (700)
.+.++|. ++..-.++++|++++|.|+.+.. .+..+.+|..|.++.| .+..+|...++++++|+.|++..|.+....
T Consensus 160 -~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 160 -LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred -hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhccccceeeeh
Confidence 6777664 45556789999999999996654 3778889999999987 567888877888999999999988874321
Q ss_pred CcccchHHHHhcCCCcceEEEEEecchhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEeccccccc
Q 005367 463 SWHENVAEELLGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKG 542 (700)
Q Consensus 463 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~ 542 (700)
--.+.++++|+.|.+..|.+....+-... .+..+++|+|..+. +..+.-..+-+++.|+.|+++.+. ++.
T Consensus 238 ------~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy--~l~kme~l~L~~N~-l~~vn~g~lfgLt~L~~L~lS~Na-I~r 307 (873)
T KOG4194|consen 238 ------GLTFQGLPSLQNLKLQRNDISKLDDGAFY--GLEKMEHLNLETNR-LQAVNEGWLFGLTSLEQLDLSYNA-IQR 307 (873)
T ss_pred ------hhhhcCchhhhhhhhhhcCcccccCccee--eecccceeecccch-hhhhhcccccccchhhhhccchhh-hhe
Confidence 12367889999999999988766542222 23477888887765 333332456678899999998776 444
Q ss_pred eeecccccccccCCccccCCccEEeeecCcCccccc--ccccCCCCceEEeeeccccccccccccCCCCCCccCCCCCCC
Q 005367 543 LKIDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLT--FLVFAPNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPF 620 (700)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 620 (700)
+.++... .+++|+.|+|+++ .+..++ .+..+..|++|.|++ +.++.+-. ..+.++
T Consensus 308 ih~d~Ws---------ftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e------------~af~~l 364 (873)
T KOG4194|consen 308 IHIDSWS---------FTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSH-NSIDHLAE------------GAFVGL 364 (873)
T ss_pred eecchhh---------hcccceeEecccc-ccccCChhHHHHHHHhhhhcccc-cchHHHHh------------hHHHHh
Confidence 5555554 5889999999986 666665 377788999999998 45665533 466788
Q ss_pred CccceeeccCcccccccc----cCCCCCCCccEEEEcCCCCCCCCCCCCCCcceEeecchhhhhcCcccccccccccccc
Q 005367 621 AKLQRLRLEGLGRLKSIY----WKPLPLPRLKELEVRGCDSLEKLPLDSNGRRILIRGHEDWWRRLQWEDEATQNAFRLC 696 (700)
Q Consensus 621 ~~L~~L~l~~c~~l~~l~----~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~ 696 (700)
.+|++|+|++. .+...- ....++|+|+.|++.|. +|+.+|.-.-++ -+.+ +-|+..+|+.++.+++-
T Consensus 365 ssL~~LdLr~N-~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsg------l~~L-E~LdL~~NaiaSIq~nA 435 (873)
T KOG4194|consen 365 SSLHKLDLRSN-ELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSG------LEAL-EHLDLGDNAIASIQPNA 435 (873)
T ss_pred hhhhhhcCcCC-eEEEEEecchhhhccchhhhheeecCc-eeeecchhhhcc------Cccc-ceecCCCCcceeecccc
Confidence 99999999873 332211 11234899999999887 899988555333 2233 45777888888888877
Q ss_pred cccC
Q 005367 697 FQPL 700 (700)
Q Consensus 697 ~~~~ 700 (700)
|.|+
T Consensus 436 Fe~m 439 (873)
T KOG4194|consen 436 FEPM 439 (873)
T ss_pred cccc
Confidence 7653
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.76 E-value=3.4e-20 Score=189.15 Aligned_cols=298 Identities=19% Similarity=0.195 Sum_probs=226.9
Q ss_pred CCCCCccccccccceeeeeccccccCCC-CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccc
Q 005367 317 LTEAPADVRGWEMGRRLSLMKNSIKNLP-TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGIS 395 (700)
Q Consensus 317 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~ 395 (700)
...+|..+-++..|+.|+++.|.++.+| .+...+++-+|+|++|+|..++...|-++..|-+|||++| .+..+|+.+.
T Consensus 92 nsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~R 170 (1255)
T KOG0444|consen 92 NSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIR 170 (1255)
T ss_pred cCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHH
Confidence 3458899999999999999999999999 7889999999999999999999998999999999999999 7899999999
Q ss_pred cccccceeccccCcccccc-hhhhcCCCCCEEecccccC-ccccchhhhcCCCccceeeccccCcccccCcccchHHHHh
Q 005367 396 KLVSLQLLDISYTRVRELP-EELKALVNLRCLNLDWAGE-LVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELL 473 (700)
Q Consensus 396 ~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~-~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 473 (700)
.+.+|++|.+++|.+..+. ..+-.|+.|+.|.++++.. +..+|.. +..+.+|+.++++.|.+ ..+|..+-
T Consensus 171 RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N~L-------p~vPecly 242 (1255)
T KOG0444|consen 171 RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSENNL-------PIVPECLY 242 (1255)
T ss_pred HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccccCC-------CcchHHHh
Confidence 9999999999999776331 2233577888888888754 3467776 88899999999998877 34688899
Q ss_pred cCCCcceEEEEEecchhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEeccccccceeecccccccc
Q 005367 474 GLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGLKIDYKDMVQK 553 (700)
Q Consensus 474 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 553 (700)
++++|++|++++|.++....-... -.+|++|+++.+. +...+ ..+..+++|+.|.+.++...-+ ..
T Consensus 243 ~l~~LrrLNLS~N~iteL~~~~~~---W~~lEtLNlSrNQ-Lt~LP-~avcKL~kL~kLy~n~NkL~Fe---------Gi 308 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGNKITELNMTEGE---WENLETLNLSRNQ-LTVLP-DAVCKLTKLTKLYANNNKLTFE---------GI 308 (1255)
T ss_pred hhhhhheeccCcCceeeeeccHHH---Hhhhhhhccccch-hccch-HHHhhhHHHHHHHhccCccccc---------CC
Confidence 999999999999988654322111 1377888887764 33333 5677788999888866552221 12
Q ss_pred cCCccccCCccEEeeecCcCccccc-ccccCCCCceEEeeeccccccccccccCCCCCCccCCCCCCCCccceeeccCcc
Q 005367 554 SRQPYVFRSLEEVTVRFCRKLKHLT-FLVFAPNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPFAKLQRLRLEGLG 632 (700)
Q Consensus 554 ~~~~~~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 632 (700)
+.++..+.+|+.+...++ .+..+| .+..|++|++|.|+.... ..+ | ..+.-++.|+.|++.+.+
T Consensus 309 PSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~NrL-iTL---------P----eaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 309 PSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNRL-ITL---------P----EAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred ccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhcccccce-eec---------h----hhhhhcCCcceeeccCCc
Confidence 233346888999988886 555555 688899999999987543 333 2 366788899999999888
Q ss_pred cccccccCCCCCCCccEEEE
Q 005367 633 RLKSIYWKPLPLPRLKELEV 652 (700)
Q Consensus 633 ~l~~l~~~~~~~~~L~~L~i 652 (700)
+|.-=|....+-.+|+.-+|
T Consensus 374 nLVMPPKP~da~~~lefYNI 393 (1255)
T KOG0444|consen 374 NLVMPPKPNDARKKLEFYNI 393 (1255)
T ss_pred CccCCCCcchhhhcceeeec
Confidence 88665543333355655444
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.73 E-value=1.3e-19 Score=176.05 Aligned_cols=317 Identities=18% Similarity=0.242 Sum_probs=198.6
Q ss_pred EEcCCCCCCCCccccccccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccC
Q 005367 311 VYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQL 390 (700)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l 390 (700)
....+-+..+|..++.+.++..|++..|.+..+|.|..|..|..|.+..|.++.++..+.+++.+|.+|||++| .++++
T Consensus 189 d~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~ 267 (565)
T KOG0472|consen 189 DCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEV 267 (565)
T ss_pred ccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccC
Confidence 34566788899999999999999999999999999999999999999999999999998889999999999999 89999
Q ss_pred CcccccccccceeccccCcccccchhhhcCCCCCEEecccccCccccchhhhcCCC--ccceeec-------cccCccc-
Q 005367 391 PMGISKLVSLQLLDISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFS--RLRVLRM-------FATGLIS- 460 (700)
Q Consensus 391 p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~--~L~~L~l-------~~~~~~~- 460 (700)
|..++.+.+|++||+++|.++.+|.+++++ +|+.|-+.||+. +.+-..++.+-+ -|++|+- +......
T Consensus 268 Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl-rTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e 345 (565)
T KOG0472|consen 268 PDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL-RTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTE 345 (565)
T ss_pred chHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch-HHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccc
Confidence 999999999999999999999999999999 999999999863 222222121111 1222211 1000000
Q ss_pred -ccCcccchHHHHhcCCCcceEEEEEecchhhHhhhhcccccccchhhhccccC-----------------------CCc
Q 005367 461 -FYSWHENVAEELLGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFD-----------------------REE 516 (700)
Q Consensus 461 -~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-----------------------~~~ 516 (700)
................+.+.|+++.-+.+.++.-.....-..-.++++++.+. ...
T Consensus 346 ~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~is 425 (565)
T KOG0472|consen 346 TAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKIS 425 (565)
T ss_pred ccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccc
Confidence 00000111122333445555655555444333211111100011122222211 111
Q ss_pred eeeecCcCccccccEEEEeccccccceeecccccccccCCccccCCccEEeeecCcCcccccccccCCCCceEEeeeccc
Q 005367 517 SIDVAGLADLEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLTFLVFAPNLKSISVCLCDD 596 (700)
Q Consensus 517 ~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~ 596 (700)
.++ ..+..+++|..|+++++. +.+++.+... +..|+.|+++++ ....+|-.-..+...++.+.....
T Consensus 426 fv~-~~l~~l~kLt~L~L~NN~-Ln~LP~e~~~----------lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nq 492 (565)
T KOG0472|consen 426 FVP-LELSQLQKLTFLDLSNNL-LNDLPEEMGS----------LVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQ 492 (565)
T ss_pred cch-HHHHhhhcceeeecccch-hhhcchhhhh----------hhhhheeccccc-ccccchHHHhhHHHHHHHHhcccc
Confidence 111 223445556666665544 3334443332 455666666654 333333322222222222222223
Q ss_pred cccccccccCCCCCCccCCCCCCCCccceeeccCcccccccccCCCCCCCccEEEEcCCC
Q 005367 597 MEEIISAGEFDDIPEMTGIISSPFAKLQRLRLEGLGRLKSIYWKPLPLPRLKELEVRGCD 656 (700)
Q Consensus 597 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~C~ 656 (700)
+..+.. +.+.++.+|.+|++.+ +.+..+|...+.+.+|++|++.|.|
T Consensus 493 i~~vd~------------~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 493 IGSVDP------------SGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred ccccCh------------HHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 333221 4577899999999987 5899999999999999999999885
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.69 E-value=1.5e-19 Score=175.63 Aligned_cols=173 Identities=25% Similarity=0.334 Sum_probs=126.0
Q ss_pred EEEcCCCCCCCCccccccccceeeeeccccccCCC-CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccc
Q 005367 310 LVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLP-TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLR 388 (700)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 388 (700)
+....+.+..+|+.+..+..+..++..+|++..+| .+..+.+|..+++.+|+++..++..+. |+.|+.||...| .++
T Consensus 119 l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N-~L~ 196 (565)
T KOG0472|consen 119 LDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSN-LLE 196 (565)
T ss_pred hhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchh-hhh
Confidence 34555666677777777778888888888888877 677788888888888888888877664 888888888877 777
Q ss_pred cCCcccccccccceeccccCcccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccch
Q 005367 389 QLPMGISKLVSLQLLDISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENV 468 (700)
Q Consensus 389 ~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 468 (700)
.+|+.++.|.+|..|++++|++..+| .|..|..|.+|.++.| .+.-+|....+++++|..|++.+|++ .++
T Consensus 197 tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdNkl-------ke~ 267 (565)
T KOG0472|consen 197 TLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDNKL-------KEV 267 (565)
T ss_pred cCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhccc-HHHhhHHHHhcccccceeeecccccc-------ccC
Confidence 88888888888888888888888777 6667777777777655 45566666555677777777777666 345
Q ss_pred HHHHhcCCCcceEEEEEecchhhHh
Q 005367 469 AEELLGLKYLEVLEITFRRFEAYQT 493 (700)
Q Consensus 469 ~~~l~~l~~L~~L~l~~~~~~~~~~ 493 (700)
|.++.-+++|.+|++++|.+++.+.
T Consensus 268 Pde~clLrsL~rLDlSNN~is~Lp~ 292 (565)
T KOG0472|consen 268 PDEICLLRSLERLDLSNNDISSLPY 292 (565)
T ss_pred chHHHHhhhhhhhcccCCccccCCc
Confidence 6666666666677776666655443
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.58 E-value=2.3e-14 Score=158.80 Aligned_cols=266 Identities=24% Similarity=0.218 Sum_probs=185.7
Q ss_pred HHHHHHhhhhhcccceEEEcCCCCCCCCccccccccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCC
Q 005367 294 MALWITCEIEKEKEGFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSM 373 (700)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 373 (700)
.+..............+.+.+.++..+|..+. .+++.|++.+|.++.+|.+ .++|++|++++|.++.++. ..
T Consensus 190 ~a~~r~~~Cl~~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~----lp 261 (788)
T PRK15387 190 AVVQKMRACLNNGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPV----LP 261 (788)
T ss_pred HHHHHHHHHhcCCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccC----cc
Confidence 33333344444445678888899999998776 5899999999999999864 5899999999999987764 24
Q ss_pred CcceEEEccCCcccccCCcccccccccceeccccCcccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeec
Q 005367 374 PCLTVLKMSGNETLRQLPMGISKLVSLQLLDISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRM 453 (700)
Q Consensus 374 ~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l 453 (700)
++|+.|++++| .+..+|... ..|+.|++++|+++.+|.. +++|+.|++++|. +..+|.. ..+|+.|++
T Consensus 262 ~sL~~L~Ls~N-~L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l----p~~L~~L~L 329 (788)
T PRK15387 262 PGLLELSIFSN-PLTHLPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL----PSELCKLWA 329 (788)
T ss_pred cccceeeccCC-chhhhhhch---hhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC----ccccccccc
Confidence 68999999999 577777533 5788999999999988863 5789999999884 4566652 246788888
Q ss_pred cccCcccccCcccchHHHHhcCCCcceEEEEEecchhhHhhhhcccccccchhhhccccCCCceeeecCcCc-cccccEE
Q 005367 454 FATGLISFYSWHENVAEELLGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLAD-LEQLNTL 532 (700)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-l~~L~~L 532 (700)
++|.+... |. ...+|+.|++++|.+..++.. ..+|..|.+.++. +.. ++. .++|+.|
T Consensus 330 s~N~L~~L-------P~---lp~~Lq~LdLS~N~Ls~LP~l------p~~L~~L~Ls~N~-L~~-----LP~l~~~L~~L 387 (788)
T PRK15387 330 YNNQLTSL-------PT---LPSGLQELSVSDNQLASLPTL------PSELYKLWAYNNR-LTS-----LPALPSGLKEL 387 (788)
T ss_pred ccCccccc-------cc---cccccceEecCCCccCCCCCC------Ccccceehhhccc-ccc-----CcccccccceE
Confidence 88877432 11 124789999999988765542 3467777776654 222 222 2578888
Q ss_pred EEeccccccceeecccccccccCCccccCCccEEeeecCcCcccccccccCCCCceEEeeeccccccccccccCCCCCCc
Q 005367 533 IFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLTFLVFAPNLKSISVCLCDDMEEIISAGEFDDIPEM 612 (700)
Q Consensus 533 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 612 (700)
++++|. +..++. .+++|++|+++++ .+..+|.+ +.+|+.|+++++ .++.+ |
T Consensus 388 dLs~N~-Lt~LP~-------------l~s~L~~LdLS~N-~LssIP~l--~~~L~~L~Ls~N-qLt~L---------P-- 438 (788)
T PRK15387 388 IVSGNR-LTSLPV-------------LPSELKELMVSGN-RLTSLPML--PSGLLSLSVYRN-QLTRL---------P-- 438 (788)
T ss_pred EecCCc-ccCCCC-------------cccCCCEEEccCC-cCCCCCcc--hhhhhhhhhccC-ccccc---------C--
Confidence 887765 332211 2457888888887 45556532 346777888774 34433 2
Q ss_pred cCCCCCCCCccceeeccCcc
Q 005367 613 TGIISSPFAKLQRLRLEGLG 632 (700)
Q Consensus 613 ~~~~~~~~~~L~~L~l~~c~ 632 (700)
..+..+++|+.|+|++++
T Consensus 439 --~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 439 --ESLIHLSSETTVNLEGNP 456 (788)
T ss_pred --hHHhhccCCCeEECCCCC
Confidence 245677888888888753
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.55 E-value=2.8e-16 Score=168.41 Aligned_cols=206 Identities=18% Similarity=0.226 Sum_probs=104.4
Q ss_pred CCCEEecccccCccccchhhhcCCCccceeeccccCccccc----------------CcccchHHHHhcCCCcceEEEEE
Q 005367 422 NLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFY----------------SWHENVAEELLGLKYLEVLEITF 485 (700)
Q Consensus 422 ~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~----------------~~~~~~~~~l~~l~~L~~L~l~~ 485 (700)
+|++++++.+ .+..+|.. ++.+.+|+.+++.+|.+.... ..-...+..+..++.|++|++..
T Consensus 242 nl~~~dis~n-~l~~lp~w-i~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 242 NLQYLDISHN-NLSNLPEW-IGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred cceeeecchh-hhhcchHH-HHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh
Confidence 4445555544 23455533 556666666666655532110 00122344455677788888887
Q ss_pred ecchhhHhhhhccc-----------------------ccccchhhhccccCCCceeeecCcCccccccEEEEeccccccc
Q 005367 486 RRFEAYQTFLSSQK-----------------------LRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKG 542 (700)
Q Consensus 486 ~~~~~~~~~~~~~~-----------------------~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~ 542 (700)
|.+..++....... ....|..|.+.++. +++..+..+.++.+||.|+++++. +..
T Consensus 320 N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~-Ltd~c~p~l~~~~hLKVLhLsyNr-L~~ 397 (1081)
T KOG0618|consen 320 NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH-LTDSCFPVLVNFKHLKVLHLSYNR-LNS 397 (1081)
T ss_pred ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc-ccccchhhhccccceeeeeecccc-ccc
Confidence 77755543111100 11123333333332 333333445555566666665544 222
Q ss_pred eeecccccccccCCccccCCccEEeeecCcCccccc-ccccCCCCceEEeeeccccccccccccCCCCCCccCCCCCCCC
Q 005367 543 LKIDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLT-FLVFAPNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPFA 621 (700)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 621 (700)
++..... .++.|++|+|+++ +++.+| .+..++.|+.|...+. .+. .+| .+..++
T Consensus 398 fpas~~~---------kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN-~l~---------~fP-----e~~~l~ 452 (1081)
T KOG0618|consen 398 FPASKLR---------KLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSN-QLL---------SFP-----ELAQLP 452 (1081)
T ss_pred CCHHHHh---------chHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCC-cee---------ech-----hhhhcC
Confidence 2222222 4555556666654 444444 2445555555544331 121 122 456778
Q ss_pred ccceeeccCcccccccccCCCC-CCCccEEEEcCCCC
Q 005367 622 KLQRLRLEGLGRLKSIYWKPLP-LPRLKELEVRGCDS 657 (700)
Q Consensus 622 ~L~~L~l~~c~~l~~l~~~~~~-~~~L~~L~i~~C~~ 657 (700)
.|+.++++ |+.++.+...... .|+|++|+++|.++
T Consensus 453 qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 453 QLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred cceEEecc-cchhhhhhhhhhCCCcccceeeccCCcc
Confidence 88888887 4677766543322 38999999988875
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=2.9e-16 Score=135.29 Aligned_cols=159 Identities=25% Similarity=0.410 Sum_probs=104.3
Q ss_pred cccccccceeeeeccccccCCC-CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccccccccc
Q 005367 323 DVRGWEMGRRLSLMKNSIKNLP-TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQ 401 (700)
Q Consensus 323 ~~~~~~~l~~l~l~~~~~~~l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~ 401 (700)
.+-+++++++|.+++|.++.+| .+..+.+|.+|++++|.++.++.. ++.+++|+.|++.-| .+..+|..||.++.|+
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmn-rl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMN-RLNILPRGFGSFPALE 105 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchh-hhhcCccccCCCchhh
Confidence 3445566666777777766665 566677777777777776666666 566777777777666 4556666777777777
Q ss_pred eeccccCccc--ccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcc
Q 005367 402 LLDISYTRVR--ELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLE 479 (700)
Q Consensus 402 ~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~ 479 (700)
.||+.+|++. .+|..+..|.-|+.|.++.|. ..-+|.. ++++++|+.|.+.+|.+.+ .|.+++.++.|+
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll~-------lpkeig~lt~lr 176 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLLS-------LPKEIGDLTRLR 176 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchhh-------CcHHHHHHHHHH
Confidence 7777776665 566666666667777776653 3555655 6677777777776665532 466667777777
Q ss_pred eEEEEEecchhhH
Q 005367 480 VLEITFRRFEAYQ 492 (700)
Q Consensus 480 ~L~l~~~~~~~~~ 492 (700)
+|++.+|.++-++
T Consensus 177 elhiqgnrl~vlp 189 (264)
T KOG0617|consen 177 ELHIQGNRLTVLP 189 (264)
T ss_pred HHhcccceeeecC
Confidence 7777776655443
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.46 E-value=3.5e-15 Score=128.72 Aligned_cols=148 Identities=28% Similarity=0.437 Sum_probs=134.0
Q ss_pred EEEcCCCCCCCCccccccccceeeeeccccccCCC-CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccc
Q 005367 310 LVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLP-TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLR 388 (700)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 388 (700)
+..+++.+..+|+++..+.+++.|.+.+|.++.+| .++.+++||.|++..|.+...+.. |+.++.|++|||++|...+
T Consensus 38 LtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprg-fgs~p~levldltynnl~e 116 (264)
T KOG0617|consen 38 LTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRG-FGSFPALEVLDLTYNNLNE 116 (264)
T ss_pred hhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccc-cCCCchhhhhhcccccccc
Confidence 56788899999999999999999999999999999 789999999999999998766666 8999999999999995443
Q ss_pred -cCCcccccccccceeccccCcccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCccc
Q 005367 389 -QLPMGISKLVSLQLLDISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLIS 460 (700)
Q Consensus 389 -~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~ 460 (700)
.+|..|..|..|+.|+++.|.+.-+|..++++++||.|.+..|. +-.+|.. ++.++.|++|++.+|++..
T Consensus 117 ~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 117 NSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred ccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHHhcccceeee
Confidence 58999999999999999999999999999999999999999884 5578887 8999999999999998744
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.42 E-value=1.2e-14 Score=141.66 Aligned_cols=291 Identities=20% Similarity=0.262 Sum_probs=199.9
Q ss_pred ceEEEcCCCCCCCCccccccccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCc
Q 005367 308 GFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNE 385 (700)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 385 (700)
..+..++.++..+|.++. .....+.+..|.|+.+| .|..+++||.|+|+.|.|+.+.++.|.+++.|..|-+.+++
T Consensus 49 ~~VdCr~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred ceEEccCCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence 345567788999999887 68899999999999999 78999999999999999999999999999999888777755
Q ss_pred ccccCCcc-cccccccceeccccCccccc-chhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccC
Q 005367 386 TLRQLPMG-ISKLVSLQLLDISYTRVREL-PEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYS 463 (700)
Q Consensus 386 ~~~~lp~~-~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 463 (700)
.++++|.. |+++..|+.|.+..|++..+ ...+..+++|..|.+..| .+..++...+..+.+++.+++..|.+.....
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccc
Confidence 89999865 78899999999999999844 456889999999999877 4566666557888999999988777544322
Q ss_pred ccc------chHHHHhcCCCcceEEEEEecchhhHhhhhcccccccchhh---hccccCCCceeeecCcCccccccEEEE
Q 005367 464 WHE------NVAEELLGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQAL---FLHEFDREESIDVAGLADLEQLNTLIF 534 (700)
Q Consensus 464 ~~~------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L---~l~~~~~~~~~~~~~l~~l~~L~~L~l 534 (700)
... ..+.+++...-..-..+....+....+ ..+..+++.+ -.+.|......+...+..+++|+.|++
T Consensus 206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a----~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnl 281 (498)
T KOG4237|consen 206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDA----RKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNL 281 (498)
T ss_pred cchhhhHHhhchhhcccceecchHHHHHHHhcccch----hhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEecc
Confidence 111 111122222211111111111111111 0111122222 112222222223345777899999999
Q ss_pred eccccccceeecccccccccCCccccCCccEEeeecCcCccccc--ccccCCCCceEEeeeccccccccccccCCCCCCc
Q 005367 535 YSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLT--FLVFAPNLKSISVCLCDDMEEIISAGEFDDIPEM 612 (700)
Q Consensus 535 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 612 (700)
+++. ++.+...++. ....+++|.|..+ .+..+. .+..+..|+.|+|.+ +.++.+..
T Consensus 282 snN~-i~~i~~~aFe---------~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~---------- 339 (498)
T KOG4237|consen 282 SNNK-ITRIEDGAFE---------GAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYD-NQITTVAP---------- 339 (498)
T ss_pred CCCc-cchhhhhhhc---------chhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecC-CeeEEEec----------
Confidence 8776 5545555555 5788899999886 566654 367888899999988 45665543
Q ss_pred cCCCCCCCCccceeecc
Q 005367 613 TGIISSPFAKLQRLRLE 629 (700)
Q Consensus 613 ~~~~~~~~~~L~~L~l~ 629 (700)
..+..+.+|.+|++-
T Consensus 340 --~aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 340 --GAFQTLFSLSTLNLL 354 (498)
T ss_pred --ccccccceeeeeehc
Confidence 355666777777775
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.40 E-value=2.3e-14 Score=153.96 Aligned_cols=229 Identities=23% Similarity=0.353 Sum_probs=118.1
Q ss_pred cceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccccccccceeccccC
Q 005367 329 MGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQLLDISYT 408 (700)
Q Consensus 329 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~ 408 (700)
+++.|....|.+..+-....-.+|.+++++.+.+..++ ++++.|.+|+.++..+| .+..+|..+..+.+|+.|.+..|
T Consensus 220 ~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~n 297 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHN-RLVALPLRISRITSLVSLSAAYN 297 (1081)
T ss_pred chheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccch-hHHhhHHHHhhhhhHHHHHhhhh
Confidence 34444444444443222233345566666666655555 55556666666666665 34555555555555555555555
Q ss_pred cccccchhhhcCCCCCEEecccccCccccchhhhcCCCc-cceeeccccCcccccCc------------------ccchH
Q 005367 409 RVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSR-LRVLRMFATGLISFYSW------------------HENVA 469 (700)
Q Consensus 409 ~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~-L~~L~l~~~~~~~~~~~------------------~~~~~ 469 (700)
.++.+|.....++.|++|++..| .+..+|+..+..... |+.|+.+.|++...... +....
T Consensus 298 el~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~ 376 (1081)
T KOG0618|consen 298 ELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCF 376 (1081)
T ss_pred hhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccch
Confidence 55555555555555566655554 344455433332221 44444443333221111 22334
Q ss_pred HHHhcCCCcceEEEEEecchhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEeccccccceeecccc
Q 005367 470 EELLGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGLKIDYKD 549 (700)
Q Consensus 470 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~ 549 (700)
.-+.++.+|+.|++++|.+..+++ +.+.++..|++|.++++. ++.++.. ..
T Consensus 377 p~l~~~~hLKVLhLsyNrL~~fpa---------------------------s~~~kle~LeeL~LSGNk-L~~Lp~t-va 427 (1081)
T KOG0618|consen 377 PVLVNFKHLKVLHLSYNRLNSFPA---------------------------SKLRKLEELEELNLSGNK-LTTLPDT-VA 427 (1081)
T ss_pred hhhccccceeeeeecccccccCCH---------------------------HHHhchHHhHHHhcccch-hhhhhHH-HH
Confidence 445666666666666666554443 345555666666666655 3333321 11
Q ss_pred cccccCCccccCCccEEeeecCcCcccccccccCCCCceEEeeeccccccc
Q 005367 550 MVQKSRQPYVFRSLEEVTVRFCRKLKHLTFLVFAPNLKSISVCLCDDMEEI 600 (700)
Q Consensus 550 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~ 600 (700)
.++.|+.|...++ .+..+|.+..++.|+.++++. ++++.+
T Consensus 428 ---------~~~~L~tL~ahsN-~l~~fPe~~~l~qL~~lDlS~-N~L~~~ 467 (1081)
T KOG0618|consen 428 ---------NLGRLHTLRAHSN-QLLSFPELAQLPQLKVLDLSC-NNLSEV 467 (1081)
T ss_pred ---------hhhhhHHHhhcCC-ceeechhhhhcCcceEEeccc-chhhhh
Confidence 3566666666554 445555666666666666664 445544
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.40 E-value=4.5e-13 Score=149.56 Aligned_cols=161 Identities=28% Similarity=0.330 Sum_probs=99.2
Q ss_pred cceEEEcCCCCCCCCccccccccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcc
Q 005367 307 EGFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNET 386 (700)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 386 (700)
...+.+.+.++..+|..+. +.++.|++++|.++.+|.- ...+|++|++++|.++.++... .++|+.|+|++| .
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N-~ 252 (754)
T PRK15370 180 KTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPEN-LQGNIKTLYANSNQLTSIPATL---PDTIQEMELSIN-R 252 (754)
T ss_pred ceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChh-hccCCCEEECCCCccccCChhh---hccccEEECcCC-c
Confidence 3445666667777776554 4677777777777777632 2257777777777776665432 235777777777 4
Q ss_pred cccCCcccccccccceeccccCcccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCccc
Q 005367 387 LRQLPMGISKLVSLQLLDISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHE 466 (700)
Q Consensus 387 ~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 466 (700)
+..+|..+. .+|++|++++|++..+|..+. .+|+.|++++|. +..+|.. + .++|+.|++++|.+...
T Consensus 253 L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-l--p~sL~~L~Ls~N~Lt~L----- 319 (754)
T PRK15370 253 ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAH-L--PSGITHLNVQSNSLTAL----- 319 (754)
T ss_pred cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCccc-c--hhhHHHHHhcCCccccC-----
Confidence 556666554 467777777777777766543 477777777763 4455543 2 13567777776665321
Q ss_pred chHHHHhcCCCcceEEEEEecchhh
Q 005367 467 NVAEELLGLKYLEVLEITFRRFEAY 491 (700)
Q Consensus 467 ~~~~~l~~l~~L~~L~l~~~~~~~~ 491 (700)
+..+ .++|+.|++++|.+..+
T Consensus 320 --P~~l--~~sL~~L~Ls~N~Lt~L 340 (754)
T PRK15370 320 --PETL--PPGLKTLEAGENALTSL 340 (754)
T ss_pred --Cccc--cccceeccccCCccccC
Confidence 1111 24566666666655443
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.34 E-value=2.6e-12 Score=143.50 Aligned_cols=219 Identities=21% Similarity=0.267 Sum_probs=145.3
Q ss_pred cceeeeeccccccCCCC-CCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccccccccceecccc
Q 005367 329 MGRRLSLMKNSIKNLPT-IPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQLLDISY 407 (700)
Q Consensus 329 ~l~~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~ 407 (700)
+...|++.++.++.+|. + .++|+.|++++|.++.++...+ ++|++|++++| .++.+|..+. .+|+.|++++
T Consensus 179 ~~~~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI--PEQITTLILDNNELKSLPENLQ---GNIKTLYANSN-QLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred CceEEEeCCCCcCcCCccc--ccCCcEEEecCCCCCcCChhhc---cCCCEEECCCC-ccccCChhhh--ccccEEECcC
Confidence 56778899999998884 3 3689999999999998877643 58999999999 6778887654 5799999999
Q ss_pred CcccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcceEEEEEec
Q 005367 408 TRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEITFRR 487 (700)
Q Consensus 408 ~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 487 (700)
|++..+|..+. .+|+.|++++| .+..+|.. + .++|+.|++++|.+... +..+ .++|+.|++++|.
T Consensus 251 N~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~-l--~~sL~~L~Ls~N~Lt~L-------P~~l--p~sL~~L~Ls~N~ 315 (754)
T PRK15370 251 NRITELPERLP--SALQSLDLFHN-KISCLPEN-L--PEELRYLSVYDNSIRTL-------PAHL--PSGITHLNVQSNS 315 (754)
T ss_pred CccCcCChhHh--CCCCEEECcCC-ccCccccc-c--CCCCcEEECCCCccccC-------cccc--hhhHHHHHhcCCc
Confidence 99999988764 58999999977 45677765 3 25899999999877432 1111 1357778888877
Q ss_pred chhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEeccccccceeecccccccccCCccccCCccEEe
Q 005367 488 FEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEVT 567 (700)
Q Consensus 488 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~ 567 (700)
+..++. ...++|+.|.+.+|. +...+ ..+ .++|+.|++++|. +..++. . ..++|++|+
T Consensus 316 Lt~LP~-----~l~~sL~~L~Ls~N~-Lt~LP-~~l--~~sL~~L~Ls~N~-L~~LP~-~-----------lp~~L~~Ld 373 (754)
T PRK15370 316 LTALPE-----TLPPGLKTLEAGENA-LTSLP-ASL--PPELQVLDVSKNQ-ITVLPE-T-----------LPPTITTLD 373 (754)
T ss_pred cccCCc-----cccccceeccccCCc-cccCC-hhh--cCcccEEECCCCC-CCcCCh-h-----------hcCCcCEEE
Confidence 665432 122466667666664 22221 112 2567777776664 222211 0 134677777
Q ss_pred eecCcCcccccccccCCCCceEEeeec
Q 005367 568 VRFCRKLKHLTFLVFAPNLKSISVCLC 594 (700)
Q Consensus 568 l~~~~~l~~l~~l~~l~~L~~L~l~~~ 594 (700)
+++| .+..+|.- ..++|+.|+++++
T Consensus 374 Ls~N-~Lt~LP~~-l~~sL~~LdLs~N 398 (754)
T PRK15370 374 VSRN-ALTNLPEN-LPAALQIMQASRN 398 (754)
T ss_pred CCCC-cCCCCCHh-HHHHHHHHhhccC
Confidence 7776 34444321 1135666666664
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.31 E-value=8.4e-12 Score=138.61 Aligned_cols=232 Identities=24% Similarity=0.197 Sum_probs=173.2
Q ss_pred cceEEEcCCCCCCCCccccccccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcc
Q 005367 307 EGFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNET 386 (700)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 386 (700)
-..+.+.++.+..+|.. +++|+.|++++|.++.+|.+ .++|+.|++++|.++.++.. ...|+.|++++| .
T Consensus 224 L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~l----p~~L~~L~Ls~N-~ 293 (788)
T PRK15387 224 ITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPAL----PSGLCKLWIFGN-Q 293 (788)
T ss_pred CCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc--ccccceeeccCCchhhhhhc----hhhcCEEECcCC-c
Confidence 35577888889998764 47899999999999999854 47999999999998776542 356889999999 6
Q ss_pred cccCCcccccccccceeccccCcccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCccc
Q 005367 387 LRQLPMGISKLVSLQLLDISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHE 466 (700)
Q Consensus 387 ~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 466 (700)
++.+|.. +++|+.|++++|++..+|.. ..+|+.|++++|. +..+|.. ..+|+.|++++|.+...
T Consensus 294 Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~-L~~LP~l----p~~Lq~LdLS~N~Ls~L----- 357 (788)
T PRK15387 294 LTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQ-LTSLPTL----PSGLQELSVSDNQLASL----- 357 (788)
T ss_pred ccccccc---ccccceeECCCCccccCCCC---cccccccccccCc-ccccccc----ccccceEecCCCccCCC-----
Confidence 7778753 47899999999999988763 3467888898874 4566641 25899999999987542
Q ss_pred chHHHHhcCCCcceEEEEEecchhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEeccccccceeec
Q 005367 467 NVAEELLGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGLKID 546 (700)
Q Consensus 467 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~ 546 (700)
|. ..++|+.|++++|.+..++.. ..+|+.|+++++. +...+ .+ .++|+.|++++|. +..++.
T Consensus 358 --P~---lp~~L~~L~Ls~N~L~~LP~l------~~~L~~LdLs~N~-Lt~LP--~l--~s~L~~LdLS~N~-LssIP~- 419 (788)
T PRK15387 358 --PT---LPSELYKLWAYNNRLTSLPAL------PSGLKELIVSGNR-LTSLP--VL--PSELKELMVSGNR-LTSLPM- 419 (788)
T ss_pred --CC---CCcccceehhhccccccCccc------ccccceEEecCCc-ccCCC--Cc--ccCCCEEEccCCc-CCCCCc-
Confidence 11 135688889999988766542 3478899998875 22222 11 3689999999886 432221
Q ss_pred ccccccccCCccccCCccEEeeecCcCccccc-ccccCCCCceEEeeecc
Q 005367 547 YKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLT-FLVFAPNLKSISVCLCD 595 (700)
Q Consensus 547 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~ 595 (700)
.+.+|+.|+++++ .++.+| .+..+++|+.|+|++++
T Consensus 420 ------------l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 420 ------------LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred ------------chhhhhhhhhccC-cccccChHHhhccCCCeEECCCCC
Confidence 2457899999987 566666 47889999999999864
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.29 E-value=9.5e-12 Score=141.25 Aligned_cols=324 Identities=21% Similarity=0.263 Sum_probs=192.2
Q ss_pred cceEEEcCCCCCCCCccccccccceeeeecccc--ccCCCC--CCCCCceeEEEecCCCCcccccccccCCCcceEEEcc
Q 005367 307 EGFLVYAGSGLTEAPADVRGWEMGRRLSLMKNS--IKNLPT--IPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMS 382 (700)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~--~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~ 382 (700)
.+.++..++....++..... ++++.|-+..|. +..++. |..++.||+|||++|.--...|..++++-+||||+++
T Consensus 525 ~rr~s~~~~~~~~~~~~~~~-~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~ 603 (889)
T KOG4658|consen 525 VRRMSLMNNKIEHIAGSSEN-PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLS 603 (889)
T ss_pred eeEEEEeccchhhccCCCCC-CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccccc
Confidence 45677777777777555443 478889888886 777775 8899999999999987545555668999999999999
Q ss_pred CCcccccCCcccccccccceeccccCc-ccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccc
Q 005367 383 GNETLRQLPMGISKLVSLQLLDISYTR-VRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISF 461 (700)
Q Consensus 383 ~~~~~~~lp~~~~~l~~L~~L~l~~~~-l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~ 461 (700)
++ .+..+|..+++++.|.+|++..+. +...|.....|.+|++|.+-... .......++.+.+|++|..-.+....
T Consensus 604 ~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~--~~~~~~~l~el~~Le~L~~ls~~~~s- 679 (889)
T KOG4658|consen 604 DT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA--LSNDKLLLKELENLEHLENLSITISS- 679 (889)
T ss_pred CC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc--cccchhhHHhhhcccchhhheeecch-
Confidence 99 788999999999999999999985 44556666679999999987653 11111224444444444443222111
Q ss_pred cCcccchHHHHhcCCCcc----eEEEEEecchhhHhhhhcccccccchhhhccccCCCceee-e-cC--cC-ccccccEE
Q 005367 462 YSWHENVAEELLGLKYLE----VLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESID-V-AG--LA-DLEQLNTL 532 (700)
Q Consensus 462 ~~~~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~-~~--l~-~l~~L~~L 532 (700)
......+.....|+ .+.+.++ .............+|+.|.+.+|...+... . .. .. .++++..+
T Consensus 680 ----~~~~e~l~~~~~L~~~~~~l~~~~~---~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~ 752 (889)
T KOG4658|consen 680 ----VLLLEDLLGMTRLRSLLQSLSIEGC---SKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKV 752 (889)
T ss_pred ----hHhHhhhhhhHHHHHHhHhhhhccc---ccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHH
Confidence 11122222233332 2222111 111222222334477777777776532211 0 00 11 14466666
Q ss_pred EEeccccccceeecccccccccCCccccCCccEEeeecCcCccccc-ccccCCCCceEEeeeccccccccccccCCCCCC
Q 005367 533 IFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLT-FLVFAPNLKSISVCLCDDMEEIISAGEFDDIPE 611 (700)
Q Consensus 533 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 611 (700)
.+.+|....+ +.|.- ..++|+.|.+..|+.+.++. ....+..++.+.+.. ........
T Consensus 753 ~~~~~~~~r~--l~~~~---------f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f-~~~~~l~~--------- 811 (889)
T KOG4658|consen 753 SILNCHMLRD--LTWLL---------FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPF-NKLEGLRM--------- 811 (889)
T ss_pred Hhhccccccc--cchhh---------ccCcccEEEEecccccccCCCHHHHhhhcccEEecc-ccccccee---------
Confidence 6667776663 33332 46889999999988777653 344444444322221 11111100
Q ss_pred ccCCCCCCCCccceeeccCcccccccccCC----CCCCCccEEEEcCC-CCCCCCCCCCC
Q 005367 612 MTGIISSPFAKLQRLRLEGLGRLKSIYWKP----LPLPRLKELEVRGC-DSLEKLPLDSN 666 (700)
Q Consensus 612 ~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~----~~~~~L~~L~i~~C-~~L~~lp~~~~ 666 (700)
....++|+++..+.+.+- .+..+.... ..+|.+..+.+.+| +++...|....
T Consensus 812 --~~~l~~l~~i~~~~l~~~-~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~ 868 (889)
T KOG4658|consen 812 --LCSLGGLPQLYWLPLSFL-KLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEW 868 (889)
T ss_pred --eecCCCCceeEecccCcc-chhheehhcCcccccCccccccceeccccceeecCCccc
Confidence 023334444444444331 233333322 34678889999997 88989987644
No 23
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.22 E-value=6.8e-10 Score=131.95 Aligned_cols=260 Identities=16% Similarity=0.220 Sum_probs=165.7
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC-ccCHHHHHHHHHHHcCCCCCC-----------CCCccHHHHHHHH
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK-DLQLEKIQETIRKKIGLCNDS-----------WKNKSLEEKAQDI 68 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~~~l 68 (700)
++|.||||++.+++++. + .+.|+++.. ..+...+...++..+...... ............+
T Consensus 40 paG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (903)
T PRK04841 40 PAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQL 112 (903)
T ss_pred CCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHH
Confidence 68999999999998653 2 699999864 446666666676666321110 0112233344444
Q ss_pred HHHhc--cCcEEEEEcCCCchh------hhhhhcCcCCCCcEEEEecCchhhhh--cc-cCcceEecc----CCChHhHH
Q 005367 69 FKTLS--KKKFALLLDDLWERV------DLKKIGVPLPKNSAVVFTTRFVDVCG--RM-EARRTFKVE----CLSDEAAW 133 (700)
Q Consensus 69 ~~~l~--~~r~LlVlDdv~~~~------~~~~l~~~~~~gs~iiiTTr~~~~~~--~~-~~~~~~~l~----~L~~~~a~ 133 (700)
...+. +++++|||||+.... .+..+....+++.++|||||...-.. .. ......+++ +|+.+|+.
T Consensus 113 ~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~ 192 (903)
T PRK04841 113 FIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQ 192 (903)
T ss_pred HHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHH
Confidence 44443 578999999997652 35555555677899999999732111 11 112345666 99999999
Q ss_pred HHHHHHhcccccCCCCChHHHHHHHHHHhCCCchHHHHHHHHhccCCC-hHHHHHHHHHHHhhhhhccCc-chhhccchh
Q 005367 134 ELFREKVGEETIESHHSIPELAQTVAKECGGLPLALITIGRAMAYKKT-PEEWRYAIEVLRRSASEFADL-GKEVYPLLK 211 (700)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~~-~~~~~~~l~ 211 (700)
++|....+.. -..+.+..+.+.++|+|+++..++..++.... ... ....+ ... ...+...+.
T Consensus 193 ~ll~~~~~~~------~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~---~~~~~-------~~~~~~~~~~~l~ 256 (903)
T PRK04841 193 QFFDQRLSSP------IEAAESSRLCDDVEGWATALQLIALSARQNNSSLHD---SARRL-------AGINASHLSDYLV 256 (903)
T ss_pred HHHHhccCCC------CCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhh---hhHhh-------cCCCchhHHHHHH
Confidence 9998776431 22677889999999999999999987754321 111 01111 000 112333322
Q ss_pred -cccCCCCccchhHHHhhhcCCCCCceeeHHHHHHHHHHcCCCCccccccchhhHHHHHHHHHhhhhccc---ccCcEee
Q 005367 212 -FSYDCLPNDAIRSCFLYCCLYPEDESIDKRDLIDCWICEGFLDEAKFGTQNQGYYIVGTLVHACLLEEV---EEDQVKM 287 (700)
Q Consensus 212 -~sy~~L~~~~~~~~~l~~~~fp~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~~L~~~sli~~~---~~~~~~~ 287 (700)
--|+.||+ ..+..++..|+++ .++.+. .. .+.. .+.....+..|.+.+++... ....|..
T Consensus 257 ~~v~~~l~~-~~~~~l~~~a~~~---~~~~~l-~~-----~l~~------~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~ 320 (903)
T PRK04841 257 EEVLDNVDL-ETRHFLLRCSVLR---SMNDAL-IV-----RVTG------EENGQMRLEELERQGLFIQRMDDSGEWFRY 320 (903)
T ss_pred HHHHhcCCH-HHHHHHHHhcccc---cCCHHH-HH-----HHcC------CCcHHHHHHHHHHCCCeeEeecCCCCEEeh
Confidence 23779999 8999999999986 233222 11 1111 23456779999999987532 2347889
Q ss_pred hHHHHHHHHHHH
Q 005367 288 HDVIRDMALWIT 299 (700)
Q Consensus 288 h~li~~~~~~~~ 299 (700)
|++++++.+...
T Consensus 321 H~L~r~~l~~~l 332 (903)
T PRK04841 321 HPLFASFLRHRC 332 (903)
T ss_pred hHHHHHHHHHHH
Confidence 999999998765
No 24
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.17 E-value=1.7e-12 Score=127.93 Aligned_cols=294 Identities=15% Similarity=0.136 Sum_probs=205.2
Q ss_pred CceeEEEecCCCCccc--ccccccCCCcceEEEccCCcccccC-Cccc-ccccccceeccccC-ccc--ccchhhhcCCC
Q 005367 350 PHLLTLFLNRNPLTTI--AGGFFQSMPCLTVLKMSGNETLRQL-PMGI-SKLVSLQLLDISYT-RVR--ELPEELKALVN 422 (700)
Q Consensus 350 ~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~l-p~~~-~~l~~L~~L~l~~~-~l~--~lp~~~~~l~~ 422 (700)
..|+.|.+.|+.-.+. ...+...+++++.|++.+|..+++- -.++ ..+.+|+++++-.| .++ .+......+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 4688889998863222 2233468999999999999766642 1223 45899999999985 666 34334567999
Q ss_pred CCEEecccccCcccc-chhhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcceEEEEEecchhhHhhhhccccc
Q 005367 423 LRCLNLDWAGELVKV-PQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEITFRRFEAYQTFLSSQKLR 501 (700)
Q Consensus 423 L~~L~l~~~~~~~~~-p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 501 (700)
|.+|++++|..+..- ......++..|+.+...+|.-... +.....-+.+.-+.++++..+.......+......+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~l----e~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELEL----EALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccH----HHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence 999999999755431 122355677777777666543211 122222245566777777666655555555556667
Q ss_pred ccchhhhccccCCCceeeecCcCc-cccccEEEEeccccccceeecccccccccCCccccCCccEEeeecCcCccccc--
Q 005367 502 SCTQALFLHEFDREESIDVAGLAD-LEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLT-- 578 (700)
Q Consensus 502 ~~L~~L~l~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-- 578 (700)
..|+.|+.++|.+.++..+..+.. +++|+.|.+.+|..+.+.....+. +..+.|+.+++..|....+-.
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~--------rn~~~Le~l~~e~~~~~~d~tL~ 365 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG--------RNCPHLERLDLEECGLITDGTLA 365 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh--------cCChhhhhhcccccceehhhhHh
Confidence 789999999999888877766654 799999999999988876666665 678999999999997555532
Q ss_pred -ccccCCCCceEEeeeccccccccccccCCCCCCccCCCCCCCCccceeeccCcccccccccC-CCCCCCccEEEEcCCC
Q 005367 579 -FLVFAPNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPFAKLQRLRLEGLGRLKSIYWK-PLPLPRLKELEVRGCD 656 (700)
Q Consensus 579 -~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~i~~C~ 656 (700)
.-.++|.|++|.+++|..+++.... ..+ ....+...|+.|.+++|+.+++-... ...+++|+.+++.+|.
T Consensus 366 sls~~C~~lr~lslshce~itD~gi~-~l~-------~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 366 SLSRNCPRLRVLSLSHCELITDEGIR-HLS-------SSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hhccCCchhccCChhhhhhhhhhhhh-hhh-------hccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 2347899999999999888876210 001 23456778999999999987764432 3457899999999998
Q ss_pred CCCCCCC
Q 005367 657 SLEKLPL 663 (700)
Q Consensus 657 ~L~~lp~ 663 (700)
..++=|+
T Consensus 438 ~vtk~~i 444 (483)
T KOG4341|consen 438 DVTKEAI 444 (483)
T ss_pred hhhhhhh
Confidence 8877553
No 25
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.16 E-value=1.5e-12 Score=128.43 Aligned_cols=267 Identities=14% Similarity=0.084 Sum_probs=116.2
Q ss_pred CCCCceeEEEecCCC-Cccc-ccccccCCCcceEEEccCCcccccCC-c-ccccccccceeccccC-ccc--ccchhhhc
Q 005367 347 PTCPHLLTLFLNRNP-LTTI-AGGFFQSMPCLTVLKMSGNETLRQLP-M-GISKLVSLQLLDISYT-RVR--ELPEELKA 419 (700)
Q Consensus 347 ~~~~~L~~L~l~~~~-~~~~-~~~~~~~~~~L~~L~L~~~~~~~~lp-~-~~~~l~~L~~L~l~~~-~l~--~lp~~~~~ 419 (700)
..|+++..|.+.+|. +++. ....-..|++|++|++..|..++... . ....+++|++++++++ .++ .+......
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 345555555555554 2211 11112345555555555554444321 1 1233555555555554 333 23333344
Q ss_pred CCCCCEEecccccCccccc-hhhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcceEEEEEecchhhHhhhhcc
Q 005367 420 LVNLRCLNLDWAGELVKVP-QQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEITFRRFEAYQTFLSSQ 498 (700)
Q Consensus 420 l~~L~~L~l~~~~~~~~~p-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 498 (700)
+.+++.+..+||.....-. ..+-+.+.-+..+++..|...++ ..+...-..+..|+.|..+++.......+-...
T Consensus 241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD----~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg 316 (483)
T KOG4341|consen 241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTD----EDLWLIACGCHALQVLCYSSCTDITDEVLWALG 316 (483)
T ss_pred chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccc----hHHHHHhhhhhHhhhhcccCCCCCchHHHHHHh
Confidence 4445555555552211100 00012233344444444433221 111111123455555555554443333333333
Q ss_pred cccccchhhhccccCCCceeeecCcCc-cccccEEEEeccccccceeecccccccccCCccccCCccEEeeecCcCcccc
Q 005367 499 KLRSCTQALFLHEFDREESIDVAGLAD-LEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHL 577 (700)
Q Consensus 499 ~~~~~L~~L~l~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 577 (700)
..+.+|+.+.+..|..+.+..+..+.. +++|+.+++..|....+......+ ..++.|++|.+++|..+++-
T Consensus 317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls--------~~C~~lr~lslshce~itD~ 388 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLS--------RNCPRLRVLSLSHCELITDE 388 (483)
T ss_pred cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhc--------cCCchhccCChhhhhhhhhh
Confidence 344455555555555555554444432 455555555555543332122222 34555555555555444433
Q ss_pred c------ccccCCCCceEEeeeccccccccccccCCCCCCccCCCCCCCCccceeeccCccccccc
Q 005367 578 T------FLVFAPNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPFAKLQRLRLEGLGRLKSI 637 (700)
Q Consensus 578 ~------~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l 637 (700)
. ....+..|++|.+++|+.+++... .....+++|+++++-+|..++.-
T Consensus 389 gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L------------e~l~~c~~Leri~l~~~q~vtk~ 442 (483)
T KOG4341|consen 389 GIRHLSSSSCSLEGLEVLELDNCPLITDATL------------EHLSICRNLERIELIDCQDVTKE 442 (483)
T ss_pred hhhhhhhccccccccceeeecCCCCchHHHH------------HHHhhCcccceeeeechhhhhhh
Confidence 1 112344555555555555554432 23444555555555555554433
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.14 E-value=1.5e-11 Score=127.35 Aligned_cols=138 Identities=25% Similarity=0.202 Sum_probs=64.5
Q ss_pred CCceeEEEecCCCCccc----ccccccCCCcceEEEccCCccc------ccCCcccccccccceeccccCccc-ccchhh
Q 005367 349 CPHLLTLFLNRNPLTTI----AGGFFQSMPCLTVLKMSGNETL------RQLPMGISKLVSLQLLDISYTRVR-ELPEEL 417 (700)
Q Consensus 349 ~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~L~~~~~~------~~lp~~~~~l~~L~~L~l~~~~l~-~lp~~~ 417 (700)
+.+|+.|+++++.++.. ....+...+.|+.|+++++... ..++..+..+++|+.|++++|.+. ..+..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 34455555555554221 1222334455555555555221 112233444556666666666554 333333
Q ss_pred hcCCC---CCEEecccccCcc----ccchhhhcCC-CccceeeccccCcccccCcccchHHHHhcCCCcceEEEEEecch
Q 005367 418 KALVN---LRCLNLDWAGELV----KVPQQLLSNF-SRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEITFRRFE 489 (700)
Q Consensus 418 ~~l~~---L~~L~l~~~~~~~----~~p~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 489 (700)
..+.+ |++|++++|.... .+... +..+ ++|+.|++++|.+... ........+..+++|++|++++|.+.
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~--~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGA--SCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHH-HHhCCCCceEEEcCCCcCCch--HHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 33333 6666666654321 11111 3344 5666666666655321 11123334455566666666666554
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.13 E-value=2.4e-12 Score=125.83 Aligned_cols=279 Identities=17% Similarity=0.191 Sum_probs=176.9
Q ss_pred cccCCCCCCCC-CceeEEEecCCCCcccccccccCCCcceEEEccCCccccc-CCcccccccccceecccc-Ccccccch
Q 005367 339 SIKNLPTIPTC-PHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQ-LPMGISKLVSLQLLDISY-TRVRELPE 415 (700)
Q Consensus 339 ~~~~l~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-lp~~~~~l~~L~~L~l~~-~~l~~lp~ 415 (700)
.++.+|. ++ +.-..+.|..|.|+.+++..|+.+++||.|||++| .++. -|..|.+++.|-.|-+.+ |+|+.+|+
T Consensus 57 GL~eVP~--~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 57 GLTEVPA--NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred CcccCcc--cCCCcceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 4555552 22 35677889999999999999999999999999999 5555 477899999999988888 89999998
Q ss_pred h-hhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcceEEEEEecchhhHh-
Q 005367 416 E-LKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEITFRRFEAYQT- 493 (700)
Q Consensus 416 ~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~- 493 (700)
. ++.+..|+.|.+.-| .+...+...+..+++|..|.+++|.+..... ..+..+..++.+.+..|.....-.
T Consensus 134 ~~F~gL~slqrLllNan-~i~Cir~~al~dL~~l~lLslyDn~~q~i~~------~tf~~l~~i~tlhlA~np~icdCnL 206 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDNKIQSICK------GTFQGLAAIKTLHLAQNPFICDCNL 206 (498)
T ss_pred hHhhhHHHHHHHhcChh-hhcchhHHHHHHhhhcchhcccchhhhhhcc------ccccchhccchHhhhcCcccccccc
Confidence 6 788999999988776 4566776668999999999999988754311 134556677777777665321110
Q ss_pred ---------hhhcccccccchhhhccccCCCceeeecCcCccccccEE---EEeccccccceeecccccccccCCccccC
Q 005367 494 ---------FLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTL---IFYSCDWIKGLKIDYKDMVQKSRQPYVFR 561 (700)
Q Consensus 494 ---------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L---~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 561 (700)
.........+.....+.+... ....-..+. ..++++ -...|......+..- ...++
T Consensus 207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri-~q~~a~kf~--c~~esl~s~~~~~d~~d~~cP~~c---------f~~L~ 274 (498)
T KOG4237|consen 207 PWLADDLAMNPIETSGARCVSPYRLYYKRI-NQEDARKFL--CSLESLPSRLSSEDFPDSICPAKC---------FKKLP 274 (498)
T ss_pred chhhhHHhhchhhcccceecchHHHHHHHh-cccchhhhh--hhHHhHHHhhccccCcCCcChHHH---------Hhhcc
Confidence 000000111111111111100 000000000 112211 111121111111111 24689
Q ss_pred CccEEeeecCcCccccc--ccccCCCCceEEeeeccccccccccccCCCCCCccCCCCCCCCccceeeccCccccccccc
Q 005367 562 SLEEVTVRFCRKLKHLT--FLVFAPNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPFAKLQRLRLEGLGRLKSIYW 639 (700)
Q Consensus 562 ~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 639 (700)
+|++|+++++ .++.+. ++..+..+++|.|.. +.++.+-. .-+.++..|+.|+|.+. .++.+.+
T Consensus 275 ~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~~------------~~f~~ls~L~tL~L~~N-~it~~~~ 339 (498)
T KOG4237|consen 275 NLRKLNLSNN-KITRIEDGAFEGAAELQELYLTR-NKLEFVSS------------GMFQGLSGLKTLSLYDN-QITTVAP 339 (498)
T ss_pred cceEeccCCC-ccchhhhhhhcchhhhhhhhcCc-chHHHHHH------------HhhhccccceeeeecCC-eeEEEec
Confidence 9999999996 666654 688899999999988 45555533 35678899999999984 6666554
Q ss_pred C-CCCCCCccEEEEcC
Q 005367 640 K-PLPLPRLKELEVRG 654 (700)
Q Consensus 640 ~-~~~~~~L~~L~i~~ 654 (700)
+ .....+|.+|.+.+
T Consensus 340 ~aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 340 GAFQTLFSLSTLNLLS 355 (498)
T ss_pred ccccccceeeeeehcc
Confidence 3 33467888887754
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.07 E-value=3.5e-11 Score=124.63 Aligned_cols=235 Identities=20% Similarity=0.072 Sum_probs=104.2
Q ss_pred CCCceeEEEecCCCCcc------cccccccCCCcceEEEccCCcccccCCcccccccc---cceeccccCccc-----cc
Q 005367 348 TCPHLLTLFLNRNPLTT------IAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVS---LQLLDISYTRVR-----EL 413 (700)
Q Consensus 348 ~~~~L~~L~l~~~~~~~------~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~---L~~L~l~~~~l~-----~l 413 (700)
..++++.|+++++.+.. ..+..+..+++|+.|++++|......+..+..+.. |++|++++|++. .+
T Consensus 49 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l 128 (319)
T cd00116 49 PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLL 128 (319)
T ss_pred hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHH
Confidence 34445555555554331 11122344555555555555332222333333333 555555555444 11
Q ss_pred chhhhcC-CCCCEEecccccCccc----cchhhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcceEEEEEecc
Q 005367 414 PEELKAL-VNLRCLNLDWAGELVK----VPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEITFRRF 488 (700)
Q Consensus 414 p~~~~~l-~~L~~L~l~~~~~~~~----~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 488 (700)
...+..+ ++|+.|++++|..... ++.. +..+++|++|++.+|.+... .....+..+..+++|+.|++++|.+
T Consensus 129 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~--~~~~l~~~l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 129 AKGLKDLPPALEKLVLGRNRLEGASCEALAKA-LRANRDLKELNLANNGIGDA--GIRALAEGLKANCNLEVLDLNNNGL 205 (319)
T ss_pred HHHHHhCCCCceEEEcCCCcCCchHHHHHHHH-HHhCCCcCEEECcCCCCchH--HHHHHHHHHHhCCCCCEEeccCCcc
Confidence 2233344 5555555555543211 1111 33445555555555544210 0011222334445555555555544
Q ss_pred hhh--HhhhhcccccccchhhhccccCCCceeeecCcC-----ccccccEEEEeccccccceeecccccccccCCccccC
Q 005367 489 EAY--QTFLSSQKLRSCTQALFLHEFDREESIDVAGLA-----DLEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFR 561 (700)
Q Consensus 489 ~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 561 (700)
... ..+.......++|+.|++++|. +.+..+..+. +.+.|++|++.+|..... ...... .....++
T Consensus 206 ~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~-~~~~l~-----~~~~~~~ 278 (319)
T cd00116 206 TDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDITDD-GAKDLA-----EVLAEKE 278 (319)
T ss_pred ChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCCCcH-HHHHHH-----HHHhcCC
Confidence 321 1222222233455555555543 2211111111 236888888888753211 111000 0012357
Q ss_pred CccEEeeecCcCcccc-----c-ccccC-CCCceEEeee
Q 005367 562 SLEEVTVRFCRKLKHL-----T-FLVFA-PNLKSISVCL 593 (700)
Q Consensus 562 ~L~~L~l~~~~~l~~l-----~-~l~~l-~~L~~L~l~~ 593 (700)
+|+.++++++. +..- . .+... +.|+.|++.+
T Consensus 279 ~L~~l~l~~N~-l~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 279 SLLELDLRGNK-FGEEGAQLLAESLLEPGNELESLWVKD 316 (319)
T ss_pred CccEEECCCCC-CcHHHHHHHHHHHhhcCCchhhcccCC
Confidence 88888888874 3322 1 23334 6788887765
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.03 E-value=3e-10 Score=103.39 Aligned_cols=140 Identities=28% Similarity=0.337 Sum_probs=40.9
Q ss_pred cccccCCCCCCCCCceeEEEecCCCCccccccccc-CCCcceEEEccCCcccccCCcccccccccceeccccCcccccch
Q 005367 337 KNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQ-SMPCLTVLKMSGNETLRQLPMGISKLVSLQLLDISYTRVRELPE 415 (700)
Q Consensus 337 ~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~ 415 (700)
.+.++.++.+-++.+++.|+|.+|.++.+.. ++ .+.+|+.|++++| .++.++ .+..+++|++|++++|+++.+..
T Consensus 6 ~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~ 81 (175)
T PF14580_consen 6 ANMIEQIAQYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRISSISE 81 (175)
T ss_dssp ------------------------------S----TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-CH
T ss_pred ccccccccccccccccccccccccccccccc--hhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCCCcccc
Confidence 3445555555566666666666666655432 33 4566666777766 455554 45566677777777777766654
Q ss_pred hh-hcCCCCCEEecccccCccccch-hhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcceEEEE
Q 005367 416 EL-KALVNLRCLNLDWAGELVKVPQ-QLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEIT 484 (700)
Q Consensus 416 ~~-~~l~~L~~L~l~~~~~~~~~p~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 484 (700)
.+ ..+++|++|++++|.. ..+.. ..++.+++|+.|++.+|++.... ..-...+..+|+|+.|+-.
T Consensus 82 ~l~~~lp~L~~L~L~~N~I-~~l~~l~~L~~l~~L~~L~L~~NPv~~~~---~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKI-SDLNELEPLSSLPKLRVLSLEGNPVCEKK---NYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGST---THHHHHHHH-TT-SEETTE
T ss_pred chHHhCCcCCEEECcCCcC-CChHHhHHHHcCCCcceeeccCCcccchh---hHHHHHHHHcChhheeCCE
Confidence 44 3567777777766632 22211 22556677777777776664321 1123345666777777644
No 30
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.02 E-value=1e-08 Score=111.02 Aligned_cols=266 Identities=17% Similarity=0.189 Sum_probs=179.8
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCCCCC-----------CCCccHHHHHHHH
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIRKKIGLCNDS-----------WKNKSLEEKAQDI 68 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~~~l 68 (700)
++|.|||||+.+++... ..-..+.|++..+.. ++..+...++..++...++ ....+...+...+
T Consensus 45 PAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L 120 (894)
T COG2909 45 PAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSL 120 (894)
T ss_pred CCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHH
Confidence 68999999999999853 455689999977654 6899999999888632211 1233333444555
Q ss_pred HHHhc--cCcEEEEEcCCCch------hhhhhhcCcCCCCcEEEEecCchhhhhc--cc-CcceEecc----CCChHhHH
Q 005367 69 FKTLS--KKKFALLLDDLWER------VDLKKIGVPLPKNSAVVFTTRFVDVCGR--ME-ARRTFKVE----CLSDEAAW 133 (700)
Q Consensus 69 ~~~l~--~~r~LlVlDdv~~~------~~~~~l~~~~~~gs~iiiTTr~~~~~~~--~~-~~~~~~l~----~L~~~~a~ 133 (700)
...+. .++.++||||-.-. +.++.+....|++-..|||||..--+.- +. .+...+|+ .++.+|+.
T Consensus 121 ~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~ 200 (894)
T COG2909 121 LNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAA 200 (894)
T ss_pred HHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHH
Confidence 55444 36899999997533 3477777788889999999996433211 11 12233333 47889999
Q ss_pred HHHHHHhcccccCCCCChHHHHHHHHHHhCCCchHHHHHHHHhccCCChHHHHHHHHHHHhhhhhccCcchhhccchhcc
Q 005367 134 ELFREKVGEETIESHHSIPELAQTVAKECGGLPLALITIGRAMAYKKTPEEWRYAIEVLRRSASEFADLGKEVYPLLKFS 213 (700)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~s 213 (700)
++|....+ .+-.+..++.+.+..+|.+-|+..++=.+++..+.+.....+.-..+..++.-. +=-
T Consensus 201 ~fl~~~~~------l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~~~~l~dYL~---------eeV 265 (894)
T COG2909 201 AFLNDRGS------LPLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGAASHLSDYLV---------EEV 265 (894)
T ss_pred HHHHHcCC------CCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccchHHHHHHHHH---------HHH
Confidence 99987652 233478899999999999999999998888444444433322211111111111 113
Q ss_pred cCCCCccchhHHHhhhcCCCCCceeeHHHHHHHHHHcCCCCccccccchhhHHHHHHHHHhhhhccc---ccCcEeehHH
Q 005367 214 YDCLPNDAIRSCFLYCCLYPEDESIDKRDLIDCWICEGFLDEAKFGTQNQGYYIVGTLVHACLLEEV---EEDQVKMHDV 290 (700)
Q Consensus 214 y~~L~~~~~~~~~l~~~~fp~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~~L~~~sli~~~---~~~~~~~h~l 290 (700)
++.||+ .++..++-+|+++.-. +.|+..- ...+.+...+++|.+++++-.. ....|..|.+
T Consensus 266 ld~Lp~-~l~~FLl~~svl~~f~----~eL~~~L-----------tg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~L 329 (894)
T COG2909 266 LDRLPP-ELRDFLLQTSVLSRFN----DELCNAL-----------TGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHL 329 (894)
T ss_pred HhcCCH-HHHHHHHHHHhHHHhh----HHHHHHH-----------hcCCcHHHHHHHHHhCCCceeeecCCCceeehhHH
Confidence 568888 7999999999886332 2233321 2335667789999999999755 6889999999
Q ss_pred HHHHHHHHHhh
Q 005367 291 IRDMALWITCE 301 (700)
Q Consensus 291 i~~~~~~~~~~ 301 (700)
+.+|.+.....
T Consensus 330 FaeFL~~r~~~ 340 (894)
T COG2909 330 FAEFLRQRLQR 340 (894)
T ss_pred HHHHHHhhhcc
Confidence 99999866554
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.3e-10 Score=115.62 Aligned_cols=210 Identities=21% Similarity=0.192 Sum_probs=101.8
Q ss_pred CCCCceeEEEecCCCCccccc-ccccCCCcceEEEccCCccccc---CCcccccccccceeccccCcccccchh--hhcC
Q 005367 347 PTCPHLLTLFLNRNPLTTIAG-GFFQSMPCLTVLKMSGNETLRQ---LPMGISKLVSLQLLDISYTRVRELPEE--LKAL 420 (700)
Q Consensus 347 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~---lp~~~~~l~~L~~L~l~~~~l~~lp~~--~~~l 420 (700)
+++++|+...|.++.+...+. .....|++++.|||+.| .+.. +...+.++++|+.|+++.|++.....+ ...+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 345566666666665444332 22445566666666655 2221 222234455555555555544422111 1234
Q ss_pred CCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcceEEEEEecchhhHhhhhcccc
Q 005367 421 VNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEITFRRFEAYQTFLSSQKL 500 (700)
Q Consensus 421 ~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 500 (700)
++|+.|.++.| .+.. ..+...+..+++|..|++..|......+ .....
T Consensus 197 ~~lK~L~l~~C-------------------------Gls~-----k~V~~~~~~fPsl~~L~L~~N~~~~~~~--~~~~i 244 (505)
T KOG3207|consen 197 SHLKQLVLNSC-------------------------GLSW-----KDVQWILLTFPSLEVLYLEANEIILIKA--TSTKI 244 (505)
T ss_pred hhhheEEeccC-------------------------CCCH-----HHHHHHHHhCCcHHHhhhhcccccceec--chhhh
Confidence 44444444444 4321 2233333445555555555543111111 11122
Q ss_pred cccchhhhccccCCCceeeecCcCccccccEEEEeccccccceeecccccccccCCccccCCccEEeeecCcC--ccccc
Q 005367 501 RSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEVTVRFCRK--LKHLT 578 (700)
Q Consensus 501 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--l~~l~ 578 (700)
.+.|++|+|+++..+..........++.|+-|.++.|..-+.-.++.... .-...|++|++|++..++- +.++.
T Consensus 245 ~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~----~kt~~f~kL~~L~i~~N~I~~w~sl~ 320 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESL----DKTHTFPKLEYLNISENNIRDWRSLN 320 (505)
T ss_pred hhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccch----hhhcccccceeeecccCccccccccc
Confidence 33566666666665555555556667777777777665322111111000 0013588899999988743 44444
Q ss_pred ccccCCCCceEEeee
Q 005367 579 FLVFAPNLKSISVCL 593 (700)
Q Consensus 579 ~l~~l~~L~~L~l~~ 593 (700)
.+..+++|+.|.+..
T Consensus 321 ~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 321 HLRTLENLKHLRITL 335 (505)
T ss_pred hhhccchhhhhhccc
Confidence 455667777776544
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.94 E-value=8.6e-10 Score=100.43 Aligned_cols=129 Identities=27% Similarity=0.347 Sum_probs=51.6
Q ss_pred cccccccceeeeeccccccCCCCCC-CCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCccc-cccccc
Q 005367 323 DVRGWEMGRRLSLMKNSIKNLPTIP-TCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGI-SKLVSL 400 (700)
Q Consensus 323 ~~~~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~-~~l~~L 400 (700)
.+.+..+++.|++++|.++.+..+. .+.+|+.|++++|.++.+.. +..++.|+.|++++| .++.+++.+ ..+++|
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNN-RISSISEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred ccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCC-CCCccccchHHhCCcC
Confidence 3444567889999999999888876 57899999999999887754 778899999999999 677776555 358899
Q ss_pred ceeccccCcccccc--hhhhcCCCCCEEecccccCccc--cchhhhcCCCccceeecc
Q 005367 401 QLLDISYTRVRELP--EELKALVNLRCLNLDWAGELVK--VPQQLLSNFSRLRVLRMF 454 (700)
Q Consensus 401 ~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~--~p~~~~~~l~~L~~L~l~ 454 (700)
++|++++|+|..+. ..+..+++|+.|++.+|+.... .-..++..+|+|+.||-.
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 99999999887443 3567899999999998865332 112346788999999865
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.90 E-value=5.3e-11 Score=121.90 Aligned_cols=168 Identities=27% Similarity=0.383 Sum_probs=105.0
Q ss_pred EEEcCCCCCCCCccccccccceeeeeccccccCCC-CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccc
Q 005367 310 LVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLP-TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLR 388 (700)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 388 (700)
...+.+.+..+|..+..+..|+.+.+..|.+..+| .+..+..|.+|+|+.|.+..++.. ++.++ |++|-+++| .++
T Consensus 80 aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~-lC~lp-Lkvli~sNN-kl~ 156 (722)
T KOG0532|consen 80 ADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDG-LCDLP-LKVLIVSNN-KLT 156 (722)
T ss_pred hhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChh-hhcCc-ceeEEEecC-ccc
Confidence 33445556666666666666666666666666666 456666666667766666655555 33443 666666666 566
Q ss_pred cCCcccccccccceeccccCcccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccch
Q 005367 389 QLPMGISKLVSLQLLDISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENV 468 (700)
Q Consensus 389 ~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 468 (700)
.+|+.++.+.+|..|+.+.|.+..+|..++.+..|+.|++..|. +..+|.. +. .-.|..|++++|++.. +
T Consensus 157 ~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~-~LpLi~lDfScNkis~-------i 226 (722)
T KOG0532|consen 157 SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LC-SLPLIRLDFSCNKISY-------L 226 (722)
T ss_pred cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-Hh-CCceeeeecccCceee-------c
Confidence 66666666666777777777666666666666677776666653 4555655 44 3346666666666533 4
Q ss_pred HHHHhcCCCcceEEEEEecchh
Q 005367 469 AEELLGLKYLEVLEITFRRFEA 490 (700)
Q Consensus 469 ~~~l~~l~~L~~L~l~~~~~~~ 490 (700)
|..+.+++.|++|.|.+|.+++
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred chhhhhhhhheeeeeccCCCCC
Confidence 5566666666666666666544
No 34
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.87 E-value=3.4e-07 Score=92.08 Aligned_cols=168 Identities=11% Similarity=0.165 Sum_probs=106.6
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHH----h-ccC
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKT----L-SKK 75 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~----l-~~~ 75 (700)
++|+||||+++.++.... . +.+ .++|+ +....+..+.+..++..++.+.+ .....+....+... . .++
T Consensus 51 ~~G~GKTtl~~~l~~~l~-~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~---~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 51 EVGAGKTTLIRNLLKRLD-Q-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE---GRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CCCCCHHHHHHHHHHhcC-C-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHHHHHHHHhCCC
Confidence 479999999999998872 1 111 22333 33445777888999999877542 22223333333322 2 568
Q ss_pred cEEEEEcCCCchh--hhhhhcC--cCCC----CcEEEEecCchhhhhcc----------cCcceEeccCCChHhHHHHHH
Q 005367 76 KFALLLDDLWERV--DLKKIGV--PLPK----NSAVVFTTRFVDVCGRM----------EARRTFKVECLSDEAAWELFR 137 (700)
Q Consensus 76 r~LlVlDdv~~~~--~~~~l~~--~~~~----gs~iiiTTr~~~~~~~~----------~~~~~~~l~~L~~~~a~~l~~ 137 (700)
+.++|+||++... .++.+.. .+.. ...|++|... +....+ +....+++++++.+|..+++.
T Consensus 124 ~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~ 202 (269)
T TIGR03015 124 RALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQLQQLRQRIIASCHLGPLDREETREYIE 202 (269)
T ss_pred CeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCH-HHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHH
Confidence 8999999998763 3444321 1111 2244555543 221111 113467899999999999998
Q ss_pred HHhcccccC-CCCChHHHHHHHHHHhCCCchHHHHHHHHh
Q 005367 138 EKVGEETIE-SHHSIPELAQTVAKECGGLPLALITIGRAM 176 (700)
Q Consensus 138 ~~~~~~~~~-~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 176 (700)
..+...+.. ...-.++....|++.++|.|..|+.++..+
T Consensus 203 ~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 203 HRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 877543311 123357899999999999999999998776
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.86 E-value=1.6e-10 Score=118.37 Aligned_cols=144 Identities=25% Similarity=0.346 Sum_probs=123.0
Q ss_pred EcCCCCCCCCccccccccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCC
Q 005367 312 YAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLP 391 (700)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp 391 (700)
...+.+..+|..+..+..++.++++.|.+..+|.-.+.--|++|.+++|+++.++++ ++..++|..||.+.| .+..+|
T Consensus 105 Ly~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~-ig~~~tl~~ld~s~n-ei~slp 182 (722)
T KOG0532|consen 105 LYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEE-IGLLPTLAHLDVSKN-EIQSLP 182 (722)
T ss_pred HHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcc-cccchhHHHhhhhhh-hhhhch
Confidence 345667778888999999999999999999998544455689999999999888887 678899999999999 788899
Q ss_pred cccccccccceeccccCcccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCccc
Q 005367 392 MGISKLVSLQLLDISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLIS 460 (700)
Q Consensus 392 ~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~ 460 (700)
..++.+..|+.|+++.|++..+|+.+. .-.|..||+++| ++..+|.. |.+|..|+.|.+.+|.+.+
T Consensus 183 sql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScN-kis~iPv~-fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 183 SQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCN-KISYLPVD-FRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred HHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccC-ceeecchh-hhhhhhheeeeeccCCCCC
Confidence 899999999999999999999999988 556889999955 67888987 8899999999999988754
No 36
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.3e-10 Score=109.70 Aligned_cols=162 Identities=15% Similarity=0.097 Sum_probs=90.5
Q ss_pred cccceeccccCccc--ccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHhcC
Q 005367 398 VSLQLLDISYTRVR--ELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGL 475 (700)
Q Consensus 398 ~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l 475 (700)
..|++||++.+.++ .+.-.+..|..|+.|.+.|...-..+... +.+-.+|+.|+++.|...+. ...--.+.+|
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~----n~~~ll~~sc 259 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFTE----NALQLLLSSC 259 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccccccch----hHHHHHHHhh
Confidence 45888888888777 55556778888888888877544444433 66667888888876654221 1223345677
Q ss_pred CCcceEEEEEecchhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEecccccc-ceeeccccccccc
Q 005367 476 KYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIK-GLKIDYKDMVQKS 554 (700)
Q Consensus 476 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~-~~~~~~~~~~~~~ 554 (700)
+.|..|+++||.......-.........|+.|+|++| ...- .-......
T Consensus 260 s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~-------------------------rrnl~~sh~~tL~----- 309 (419)
T KOG2120|consen 260 SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGY-------------------------RRNLQKSHLSTLV----- 309 (419)
T ss_pred hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhh-------------------------HhhhhhhHHHHHH-----
Confidence 7777777777765433222222223334444444444 3211 00011111
Q ss_pred CCccccCCccEEeeecCcCccc--ccccccCCCCceEEeeecccc
Q 005367 555 RQPYVFRSLEEVTVRFCRKLKH--LTFLVFAPNLKSISVCLCDDM 597 (700)
Q Consensus 555 ~~~~~~~~L~~L~l~~~~~l~~--l~~l~~l~~L~~L~l~~~~~l 597 (700)
..+|+|..|+|++|..++. +..+-.++.|++|+++.|..+
T Consensus 310 ---~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 310 ---RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred ---HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC
Confidence 2466666666666665544 122445666667777666543
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=3.5e-10 Score=112.57 Aligned_cols=163 Identities=18% Similarity=0.182 Sum_probs=98.5
Q ss_pred ccccccccceeeeeccccccCCC---CCCCCCceeEEEecCCCCccc--ccccccCCCcceEEEccCCcccccCCcc--c
Q 005367 322 ADVRGWEMGRRLSLMKNSIKNLP---TIPTCPHLLTLFLNRNPLTTI--AGGFFQSMPCLTVLKMSGNETLRQLPMG--I 394 (700)
Q Consensus 322 ~~~~~~~~l~~l~l~~~~~~~l~---~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~lp~~--~ 394 (700)
+.-+++++|+...+.++.+..++ ....|++++.|+|++|-+... ...+...+|+|+.|+|+.|+ +....++ -
T Consensus 115 akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~ 193 (505)
T KOG3207|consen 115 AKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTT 193 (505)
T ss_pred HHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCccccch
Confidence 33445567777777777766655 456778888888887765443 23345677888888888773 2221111 2
Q ss_pred ccccccceeccccCccc--ccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHH
Q 005367 395 SKLVSLQLLDISYTRVR--ELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEEL 472 (700)
Q Consensus 395 ~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l 472 (700)
..+.+|+.|.+++|+++ ++......+++|+.|++..|......... ...+..|+.|++++|++... .....+
T Consensus 194 ~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~-----~~~~~~ 267 (505)
T KOG3207|consen 194 LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDF-----DQGYKV 267 (505)
T ss_pred hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCccccc-----cccccc
Confidence 24677777888888776 44444556777777777777422211111 23456677777777766442 112335
Q ss_pred hcCCCcceEEEEEecchhh
Q 005367 473 LGLKYLEVLEITFRRFEAY 491 (700)
Q Consensus 473 ~~l~~L~~L~l~~~~~~~~ 491 (700)
+.++.|+.|.++.+.+.++
T Consensus 268 ~~l~~L~~Lnls~tgi~si 286 (505)
T KOG3207|consen 268 GTLPGLNQLNLSSTGIASI 286 (505)
T ss_pred ccccchhhhhccccCcchh
Confidence 6677777777776665543
No 38
>PF05729 NACHT: NACHT domain
Probab=98.81 E-value=4.8e-08 Score=90.30 Aligned_cols=133 Identities=20% Similarity=0.329 Sum_probs=85.3
Q ss_pred CCCCcHHHHHHHHHhhcccCCC---CCCEEEEEEeCCccCHH---HHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhcc
Q 005367 1 MGGVGKTTLLTQINNKFVDNPT---DFDYVIWVVVSKDLQLE---KIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSK 74 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~---~f~~~~wv~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 74 (700)
.+|+|||++++.++.+...... .+..++|+...+..... .+...+..+.... ..........+. ...
T Consensus 8 ~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~~~~~~~~~~--~~~ 80 (166)
T PF05729_consen 8 EPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES-----IAPIEELLQELL--EKN 80 (166)
T ss_pred CCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc-----hhhhHHHHHHHH--HcC
Confidence 4899999999999988732221 14677888766654432 4444555554321 111122111222 246
Q ss_pred CcEEEEEcCCCchhh-------------hhhhcCc-CCCCcEEEEecCchhh---hhcccCcceEeccCCChHhHHHHHH
Q 005367 75 KKFALLLDDLWERVD-------------LKKIGVP-LPKNSAVVFTTRFVDV---CGRMEARRTFKVECLSDEAAWELFR 137 (700)
Q Consensus 75 ~r~LlVlDdv~~~~~-------------~~~l~~~-~~~gs~iiiTTr~~~~---~~~~~~~~~~~l~~L~~~~a~~l~~ 137 (700)
++++||||++++... +..+... .+++.++|||+|.... .........+++++|++++..+++.
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLR 160 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHH
Confidence 899999999987643 2222222 4569999999997665 2333445689999999999999998
Q ss_pred HHh
Q 005367 138 EKV 140 (700)
Q Consensus 138 ~~~ 140 (700)
++.
T Consensus 161 ~~f 163 (166)
T PF05729_consen 161 KYF 163 (166)
T ss_pred HHh
Confidence 765
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.77 E-value=4.7e-09 Score=99.39 Aligned_cols=131 Identities=21% Similarity=0.232 Sum_probs=98.6
Q ss_pred ccCCCcceEEEccCCcccccCCcccccccccceeccccCcccccchhhhcCCCCCEEecccccCccccchhhhcCCCccc
Q 005367 370 FQSMPCLTVLKMSGNETLRQLPMGISKLVSLQLLDISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLR 449 (700)
Q Consensus 370 ~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~ 449 (700)
+..++.|+.+||++| .++.+.+++.-.+.++.|++++|++..+.. +..+++|++|++++|. +..+... -.++.+++
T Consensus 280 ~dTWq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gw-h~KLGNIK 355 (490)
T KOG1259|consen 280 ADTWQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGW-HLKLGNIK 355 (490)
T ss_pred cchHhhhhhcccccc-chhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhh-HhhhcCEe
Confidence 456788999999999 788888888888999999999999987754 8889999999999884 3444332 34678889
Q ss_pred eeeccccCcccccCcccchHHHHhcCCCcceEEEEEecchhhHhhhhcccccccchhhhccccC
Q 005367 450 VLRMFATGLISFYSWHENVAEELLGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFD 513 (700)
Q Consensus 450 ~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 513 (700)
.|.+..|.+.. ...++.+=+|..|++..|+++.+.+.....+ .++|+.+.|.+++
T Consensus 356 tL~La~N~iE~--------LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~-LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 356 TLKLAQNKIET--------LSGLRKLYSLVNLDLSSNQIEELDEVNHIGN-LPCLETLRLTGNP 410 (490)
T ss_pred eeehhhhhHhh--------hhhhHhhhhheeccccccchhhHHHhccccc-ccHHHHHhhcCCC
Confidence 99998877632 4556677778899999999887776543333 2366666666655
No 40
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.71 E-value=1.3e-06 Score=93.18 Aligned_cols=262 Identities=15% Similarity=0.095 Sum_probs=148.4
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhc--cCcEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLS--KKKFA 78 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~r~L 78 (700)
++|+|||++++.++++.. .....-.+++|++....+...++..+++++..........+.++....+.+.+. ++..+
T Consensus 63 ~~GtGKT~l~~~v~~~l~-~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v 141 (394)
T PRK00411 63 PPGTGKTTTVKKVFEELE-EIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLI 141 (394)
T ss_pred CCCCCHHHHHHHHHHHHH-HhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEE
Confidence 589999999999999872 122234567888888788889999999998652211133356677777777775 35689
Q ss_pred EEEcCCCchh------hhhhhcCcCC--CCcE--EEEecCchhhhhccc-------CcceEeccCCChHhHHHHHHHHhc
Q 005367 79 LLLDDLWERV------DLKKIGVPLP--KNSA--VVFTTRFVDVCGRME-------ARRTFKVECLSDEAAWELFREKVG 141 (700)
Q Consensus 79 lVlDdv~~~~------~~~~l~~~~~--~gs~--iiiTTr~~~~~~~~~-------~~~~~~l~~L~~~~a~~l~~~~~~ 141 (700)
||||+++... .+..+..... ++++ +|.++++.++..... ....+.+++++.++..+++..++.
T Consensus 142 iviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 142 VALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred EEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHH
Confidence 9999998643 2333322221 1333 566665544332221 134679999999999999998873
Q ss_pred ccccCCCCChHHHHHHHHHHh----CCCchHHHHHHHH--hcc--C---CChHHHHHHHHHHHhhhhhccCcchhhccch
Q 005367 142 EETIESHHSIPELAQTVAKEC----GGLPLALITIGRA--MAY--K---KTPEEWRYAIEVLRRSASEFADLGKEVYPLL 210 (700)
Q Consensus 142 ~~~~~~~~~~~~~~~~i~~~~----~g~Plai~~~~~~--l~~--~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 210 (700)
..- ....-.++.+..+++.+ |..+.|+.++-.+ .+. . -+.+.....++.... ..+
T Consensus 222 ~~~-~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~~-------------~~~ 287 (394)
T PRK00411 222 EGF-YPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSEI-------------VHL 287 (394)
T ss_pred hhc-ccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHH-------------HHH
Confidence 211 11112244455555544 5577777665432 221 1 145555555554421 112
Q ss_pred hcccCCCCccchhHHHhhhcCCC--CCceeeHHHHHHH--HHHcCCCCccccccchhhHHHHHHHHHhhhhccc
Q 005367 211 KFSYDCLPNDAIRSCFLYCCLYP--EDESIDKRDLIDC--WICEGFLDEAKFGTQNQGYYIVGTLVHACLLEEV 280 (700)
Q Consensus 211 ~~sy~~L~~~~~~~~~l~~~~fp--~~~~i~~~~l~~~--w~~~g~~~~~~~~~~~~~~~~~~~L~~~sli~~~ 280 (700)
.-.+..||. +.+..+..++..- ....+...++... .+++..- ..+-.......++..|...+++...
T Consensus 288 ~~~~~~L~~-~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~--~~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 288 SEVLRTLPL-HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG--YEPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred HHHHhcCCH-HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC--CCcCcHHHHHHHHHHHHhcCCeEEE
Confidence 335678887 4444333333221 1123455554432 2221110 0011335567788899999888753
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1.2e-09 Score=103.27 Aligned_cols=107 Identities=24% Similarity=0.229 Sum_probs=79.9
Q ss_pred cceEEEccCCcccc--cCCcccccccccceeccccCccc-ccchhhhcCCCCCEEecccccCccccch-hhhcCCCccce
Q 005367 375 CLTVLKMSGNETLR--QLPMGISKLVSLQLLDISYTRVR-ELPEELKALVNLRCLNLDWAGELVKVPQ-QLLSNFSRLRV 450 (700)
Q Consensus 375 ~L~~L~L~~~~~~~--~lp~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~~l~~L~~ 450 (700)
.|++|||++. .++ .+-..+++|.+|+.|.+.++.+. .+...+.+-.+|+.|++++|+.++.... -++.+|+.|..
T Consensus 186 Rlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 5899999998 343 24445788999999999999888 6777788999999999999976665432 34779999999
Q ss_pred eeccccCcccccCcccchHHHHhcC-CCcceEEEEEec
Q 005367 451 LRMFATGLISFYSWHENVAEELLGL-KYLEVLEITFRR 487 (700)
Q Consensus 451 L~l~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~ 487 (700)
|+++-|.... ..+...+... ++|..|+++++.
T Consensus 265 LNlsWc~l~~-----~~Vtv~V~hise~l~~LNlsG~r 297 (419)
T KOG2120|consen 265 LNLSWCFLFT-----EKVTVAVAHISETLTQLNLSGYR 297 (419)
T ss_pred cCchHhhccc-----hhhhHHHhhhchhhhhhhhhhhH
Confidence 9998776533 2222233333 678899988754
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.63 E-value=5.7e-09 Score=98.79 Aligned_cols=143 Identities=23% Similarity=0.360 Sum_probs=93.9
Q ss_pred ccccceeeeeccccccCCC-CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccccccccceec
Q 005367 326 GWEMGRRLSLMKNSIKNLP-TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQLLD 404 (700)
Q Consensus 326 ~~~~l~~l~l~~~~~~~l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~ 404 (700)
.+..|+.+++++|.++.+- ...-.|.+|+|++++|.+..... +..+++|+.|||++| .++++-..-.++-++++|.
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccc-hhHhhhhhHhhhcCEeeee
Confidence 4466777788887777665 44556778888888887665544 566777788888887 4555544444566777777
Q ss_pred cccCcccccchhhhcCCCCCEEecccccCccccch-hhhcCCCccceeeccccCcccccCcccchHHHHh
Q 005367 405 ISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQ-QLLSNFSRLRVLRMFATGLISFYSWHENVAEELL 473 (700)
Q Consensus 405 l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 473 (700)
+++|.+..+ ++++++.+|..|++++|. +..+.. ..+|++|-|+++.+.+|++.....+...+...++
T Consensus 359 La~N~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYRTKVLa~FG 426 (490)
T KOG1259|consen 359 LAQNKIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLAGSVDYRTKVLARFG 426 (490)
T ss_pred hhhhhHhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCccccchHHHHHHHHHh
Confidence 887777766 367777788888887774 333322 2267777777777777776554444444444443
No 43
>PRK06893 DNA replication initiation factor; Validated
Probab=98.61 E-value=2.1e-07 Score=90.41 Aligned_cols=143 Identities=17% Similarity=0.222 Sum_probs=89.9
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
++|+|||.||.++++.. .+....+.|+.+.... .... .+.+.+. +.-+||
T Consensus 47 ~~G~GKThL~~ai~~~~---~~~~~~~~y~~~~~~~---~~~~-----------------------~~~~~~~-~~dlLi 96 (229)
T PRK06893 47 GKSSGKSHLLKAVSNHY---LLNQRTAIYIPLSKSQ---YFSP-----------------------AVLENLE-QQDLVC 96 (229)
T ss_pred CCCCCHHHHHHHHHHHH---HHcCCCeEEeeHHHhh---hhhH-----------------------HHHhhcc-cCCEEE
Confidence 47999999999999986 3333455677653110 0000 1111122 234999
Q ss_pred EcCCCch---hhhhh-hcC---cC-CCCcEEEE-ecCc---------hhhhhcccCcceEeccCCChHhHHHHHHHHhcc
Q 005367 81 LDDLWER---VDLKK-IGV---PL-PKNSAVVF-TTRF---------VDVCGRMEARRTFKVECLSDEAAWELFREKVGE 142 (700)
Q Consensus 81 lDdv~~~---~~~~~-l~~---~~-~~gs~iii-TTr~---------~~~~~~~~~~~~~~l~~L~~~~a~~l~~~~~~~ 142 (700)
|||++.. .+|+. +.. .. ..|+.+|| |++. +++..++.....++++++++++.++++.+.+..
T Consensus 97 lDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~ 176 (229)
T PRK06893 97 LDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQ 176 (229)
T ss_pred EeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHH
Confidence 9999864 23331 212 11 23666654 5543 355555555678999999999999999999975
Q ss_pred cccCCCCChHHHHHHHHHHhCCCchHHHHHHHHh
Q 005367 143 ETIESHHSIPELAQTVAKECGGLPLALITIGRAM 176 (700)
Q Consensus 143 ~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 176 (700)
.+...+ ++...-|++.++|-.-++..+-..+
T Consensus 177 ~~l~l~---~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 177 RGIELS---DEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred cCCCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 543444 8889999999988776655444333
No 44
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.61 E-value=5.8e-07 Score=92.12 Aligned_cols=239 Identities=15% Similarity=0.098 Sum_probs=132.2
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCC----CCCCCccHHHHHHHHHHHhccCc
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCN----DSWKNKSLEEKAQDIFKTLSKKK 76 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~r 76 (700)
++|+|||+||+.+++.. ...+ ..+......... .+...+..+.... ++.+.-. .+....+...+.+.+
T Consensus 38 p~G~GKT~la~~ia~~~---~~~~---~~~~~~~~~~~~-~l~~~l~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~ 109 (305)
T TIGR00635 38 PPGLGKTTLAHIIANEM---GVNL---KITSGPALEKPG-DLAAILTNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFR 109 (305)
T ss_pred CCCCCHHHHHHHHHHHh---CCCE---EEeccchhcCch-hHHHHHHhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhh
Confidence 58999999999999987 2222 122211111122 2222333332211 1101111 123344566666777
Q ss_pred EEEEEcCCCchhhhhhhcCcCCCCcEEEEecCchhhhhccc--CcceEeccCCChHhHHHHHHHHhcccccCCCCChHHH
Q 005367 77 FALLLDDLWERVDLKKIGVPLPKNSAVVFTTRFVDVCGRME--ARRTFKVECLSDEAAWELFREKVGEETIESHHSIPEL 154 (700)
Q Consensus 77 ~LlVlDdv~~~~~~~~l~~~~~~gs~iiiTTr~~~~~~~~~--~~~~~~l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~ 154 (700)
..+|+++..+..++.. ..++..-|..||+...+...+. -...+++++++.++..+++.+.+...... -.++.
T Consensus 110 ~~~v~~~~~~~~~~~~---~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~---~~~~a 183 (305)
T TIGR00635 110 LDIVIGKGPSARSVRL---DLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVE---IEPEA 183 (305)
T ss_pred eeeeeccCccccceee---cCCCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCC---cCHHH
Confidence 7788887665554432 2334566667777644432221 13467999999999999999888654422 23678
Q ss_pred HHHHHHHhCCCchHHHHHHHHhcc------C--CChHHHHHHHHHHHhhhhhccCcchhhccchhcccCCCCccchhHHH
Q 005367 155 AQTVAKECGGLPLALITIGRAMAY------K--KTPEEWRYAIEVLRRSASEFADLGKEVYPLLKFSYDCLPNDAIRSCF 226 (700)
Q Consensus 155 ~~~i~~~~~g~Plai~~~~~~l~~------~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~~~~~ 226 (700)
+..|++.|+|.|..+..++..+.. . -+.+..+ .....+..+|..++. +.+..+
T Consensus 184 l~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~------------------~~l~~l~~~~~~l~~-~~~~~L 244 (305)
T TIGR00635 184 ALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIAL------------------KALEMLMIDELGLDE-IDRKLL 244 (305)
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHH------------------HHHHHhCCCCCCCCH-HHHHHH
Confidence 899999999999776555544310 0 0111111 111224556778887 555555
Q ss_pred h-hhcCCCCCceeeHHHHHHHHHHcCCCCccccccchhhHHHHH-HHHHhhhhcccccC
Q 005367 227 L-YCCLYPEDESIDKRDLIDCWICEGFLDEAKFGTQNQGYYIVG-TLVHACLLEEVEED 283 (700)
Q Consensus 227 l-~~~~fp~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~-~L~~~sli~~~~~~ 283 (700)
. ....+.++ .+....+.... ......+...+. .|+++++++....+
T Consensus 245 ~al~~~~~~~-~~~~~~ia~~l----------g~~~~~~~~~~e~~Li~~~li~~~~~g 292 (305)
T TIGR00635 245 SVLIEQFQGG-PVGLKTLAAAL----------GEDADTIEDVYEPYLLQIGFLQRTPRG 292 (305)
T ss_pred HHHHHHhCCC-cccHHHHHHHh----------CCCcchHHHhhhHHHHHcCCcccCCch
Confidence 4 33555443 34444433322 223345666677 69999999765333
No 45
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.60 E-value=1.3e-06 Score=87.29 Aligned_cols=193 Identities=18% Similarity=0.132 Sum_probs=115.6
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHH-HHhccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIF-KTLSKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~r~Ll 79 (700)
++|+||||||+.++... ...|... +-..+ ...++.+..+.-+ ....++|++|
T Consensus 56 PPG~GKTTlA~liA~~~---~~~f~~~-----sAv~~-------------------gvkdlr~i~e~a~~~~~~gr~tiL 108 (436)
T COG2256 56 PPGTGKTTLARLIAGTT---NAAFEAL-----SAVTS-------------------GVKDLREIIEEARKNRLLGRRTIL 108 (436)
T ss_pred CCCCCHHHHHHHHHHhh---CCceEEe-----ccccc-------------------cHHHHHHHHHHHHHHHhcCCceEE
Confidence 68999999999999987 4443321 11111 2222223333222 2234789999
Q ss_pred EEcCCCch--hhhhhhcCcCCCCcEEEE--ecCchhhhhc---ccCcceEeccCCChHhHHHHHHHHhcccc--cC-C-C
Q 005367 80 LLDDLWER--VDLKKIGVPLPKNSAVVF--TTRFVDVCGR---MEARRTFKVECLSDEAAWELFREKVGEET--IE-S-H 148 (700)
Q Consensus 80 VlDdv~~~--~~~~~l~~~~~~gs~iii--TTr~~~~~~~---~~~~~~~~l~~L~~~~a~~l~~~~~~~~~--~~-~-~ 148 (700)
++|.|..- .+-|.+++....|..|+| ||.++.-.-. .....++++++|+.++-.+++.+-+.... .. . .
T Consensus 109 flDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~ 188 (436)
T COG2256 109 FLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQII 188 (436)
T ss_pred EEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccc
Confidence 99999644 677888777777888887 6766554211 12347899999999999999998442221 11 1 1
Q ss_pred CChHHHHHHHHHHhCCCc-hHHHHH---HHHhccCC--ChHHHHHHHHHHHhhhhhccCcchhhccchhcccCCCCcc
Q 005367 149 HSIPELAQTVAKECGGLP-LALITI---GRAMAYKK--TPEEWRYAIEVLRRSASEFADLGKEVYPLLKFSYDCLPND 220 (700)
Q Consensus 149 ~~~~~~~~~i~~~~~g~P-lai~~~---~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~ 220 (700)
...++..+.+++.++|-- .|++.+ +..-+... ..+..++.++.-......-.+.+..+.+++..|...-++|
T Consensus 189 ~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~d 266 (436)
T COG2256 189 VLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSARFDKDGDAHYDLISALHKSVRGSDPD 266 (436)
T ss_pred cCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHhhccCCcC
Confidence 123668888899998854 333332 22222211 2334444333322222222233458889999999998884
No 46
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.59 E-value=3.9e-08 Score=104.91 Aligned_cols=158 Identities=26% Similarity=0.366 Sum_probs=88.9
Q ss_pred ccccccccceeeeeccccccCCCCCCCCC--ceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccccccc
Q 005367 322 ADVRGWEMGRRLSLMKNSIKNLPTIPTCP--HLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVS 399 (700)
Q Consensus 322 ~~~~~~~~l~~l~l~~~~~~~l~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~ 399 (700)
..+..++.+..+++.++.+.+++...... +|+.|++++|.+..++.. +..+++|+.|++++| .+.++|...+.++.
T Consensus 110 ~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~ 187 (394)
T COG4886 110 SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFN-DLSDLPKLLSNLSN 187 (394)
T ss_pred hhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCc-hhhhhhhhhhhhhh
Confidence 33444455666666666666666544332 666666666666555422 456666666666666 55666655555666
Q ss_pred cceeccccCcccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcc
Q 005367 400 LQLLDISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLE 479 (700)
Q Consensus 400 L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~ 479 (700)
|+.|++++|++..+|..+..+..|+.+.+++|... ..+.. +.++.++..+.+.+|++.. .+..++.+++++
T Consensus 188 L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~-~~~~~~l~~l~l~~n~~~~-------~~~~~~~l~~l~ 258 (394)
T COG4886 188 LNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSS-LSNLKNLSGLELSNNKLED-------LPESIGNLSNLE 258 (394)
T ss_pred hhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchh-hhhcccccccccCCceeee-------ccchhccccccc
Confidence 66666666666666665555555666666655322 22222 4555566665555544321 133445555566
Q ss_pred eEEEEEecchh
Q 005367 480 VLEITFRRFEA 490 (700)
Q Consensus 480 ~L~l~~~~~~~ 490 (700)
.|+++.|.+..
T Consensus 259 ~L~~s~n~i~~ 269 (394)
T COG4886 259 TLDLSNNQISS 269 (394)
T ss_pred eeccccccccc
Confidence 66666555443
No 47
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.55 E-value=1.5e-06 Score=89.70 Aligned_cols=244 Identities=13% Similarity=0.073 Sum_probs=130.1
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCC----CCCCCccHHHHHHHHHHHhccCc
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCN----DSWKNKSLEEKAQDIFKTLSKKK 76 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~r 76 (700)
++|+|||++|+.+++.. ...+ .++.. ........+..++..+.... ++.+... ......+...+...+
T Consensus 59 ppG~GKT~la~~ia~~l---~~~~---~~~~~-~~~~~~~~l~~~l~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~ 130 (328)
T PRK00080 59 PPGLGKTTLANIIANEM---GVNI---RITSG-PALEKPGDLAAILTNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFR 130 (328)
T ss_pred CCCccHHHHHHHHHHHh---CCCe---EEEec-ccccChHHHHHHHHhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcc
Confidence 58999999999999997 3221 12221 11222223333344332211 0000000 112223445555666
Q ss_pred EEEEEcCCCchhhhhhhcCcCCCCcEEEEecCchhhhhccc--CcceEeccCCChHhHHHHHHHHhcccccCCCCChHHH
Q 005367 77 FALLLDDLWERVDLKKIGVPLPKNSAVVFTTRFVDVCGRME--ARRTFKVECLSDEAAWELFREKVGEETIESHHSIPEL 154 (700)
Q Consensus 77 ~LlVlDdv~~~~~~~~l~~~~~~gs~iiiTTr~~~~~~~~~--~~~~~~l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~ 154 (700)
..+|+|+..+...+.. .+++.+-|..|++...+...+. ....++++++++++..+++.+.+...+... .++.
T Consensus 131 ~~~~l~~~~~~~~~~~---~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~---~~~~ 204 (328)
T PRK00080 131 LDIMIGKGPAARSIRL---DLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEI---DEEG 204 (328)
T ss_pred eeeeeccCccccceee---cCCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCc---CHHH
Confidence 6677776554433321 2333555666777544332221 134689999999999999999987654333 3688
Q ss_pred HHHHHHHhCCCchHHHHHHHHhccCCChHHHHHHHHHHHhhhhhccCcchhhccchhcccCCCCccchhHHHh-hhcCCC
Q 005367 155 AQTVAKECGGLPLALITIGRAMAYKKTPEEWRYAIEVLRRSASEFADLGKEVYPLLKFSYDCLPNDAIRSCFL-YCCLYP 233 (700)
Q Consensus 155 ~~~i~~~~~g~Plai~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~~~~~l-~~~~fp 233 (700)
+..|++.|+|.|..+..+...+.. |.... ........ .-......+...+..|++ ..+..+. ....|.
T Consensus 205 ~~~ia~~~~G~pR~a~~~l~~~~~------~a~~~---~~~~I~~~-~v~~~l~~~~~~~~~l~~-~~~~~l~~~~~~~~ 273 (328)
T PRK00080 205 ALEIARRSRGTPRIANRLLRRVRD------FAQVK---GDGVITKE-IADKALDMLGVDELGLDE-MDRKYLRTIIEKFG 273 (328)
T ss_pred HHHHHHHcCCCchHHHHHHHHHHH------HHHHc---CCCCCCHH-HHHHHHHHhCCCcCCCCH-HHHHHHHHHHHHcC
Confidence 999999999999655555443311 10000 00000000 001222334667778877 5556554 555666
Q ss_pred CCceeeHHHHHHHHHHcCCCCccccccchhhHHHHH-HHHHhhhhccc
Q 005367 234 EDESIDKRDLIDCWICEGFLDEAKFGTQNQGYYIVG-TLVHACLLEEV 280 (700)
Q Consensus 234 ~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~-~L~~~sli~~~ 280 (700)
.+ .+..+.+.... ....+.+++.+. .|++.+|++..
T Consensus 274 ~~-~~~~~~~a~~l----------g~~~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 274 GG-PVGLDTLAAAL----------GEERDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred CC-ceeHHHHHHHH----------CCCcchHHHHhhHHHHHcCCcccC
Confidence 55 35555544332 223345555566 88999998754
No 48
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.53 E-value=1.3e-07 Score=100.86 Aligned_cols=101 Identities=32% Similarity=0.470 Sum_probs=54.2
Q ss_pred EEEecCCCCcccccccccCCCcceEEEccCCcccccCCccccccc-ccceeccccCcccccchhhhcCCCCCEEeccccc
Q 005367 354 TLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLV-SLQLLDISYTRVRELPEELKALVNLRCLNLDWAG 432 (700)
Q Consensus 354 ~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~-~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~ 432 (700)
.+.+..+.+...... +...+.+..|++.++ .+.+++...+.+. +|+.|++++|++..+|..++.+++|+.|+++.|.
T Consensus 97 ~l~~~~~~~~~~~~~-~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISE-LLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchh-hhcccceeEEecCCc-ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence 455555544222222 234455666666666 4555555555553 6666666666666665555666666666666553
Q ss_pred CccccchhhhcCCCccceeeccccCc
Q 005367 433 ELVKVPQQLLSNFSRLRVLRMFATGL 458 (700)
Q Consensus 433 ~~~~~p~~~~~~l~~L~~L~l~~~~~ 458 (700)
+..+|.. .+.+++|+.|++++|.+
T Consensus 175 -l~~l~~~-~~~~~~L~~L~ls~N~i 198 (394)
T COG4886 175 -LSDLPKL-LSNLSNLNNLDLSGNKI 198 (394)
T ss_pred -hhhhhhh-hhhhhhhhheeccCCcc
Confidence 3444442 22555566666655554
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.50 E-value=2e-08 Score=97.60 Aligned_cols=139 Identities=21% Similarity=0.126 Sum_probs=67.2
Q ss_pred CCCCceeEEEecCCCCccc----ccccccCCCcceEEEccCCc---ccccCCcc-------cccccccceeccccCccc-
Q 005367 347 PTCPHLLTLFLNRNPLTTI----AGGFFQSMPCLTVLKMSGNE---TLRQLPMG-------ISKLVSLQLLDISYTRVR- 411 (700)
Q Consensus 347 ~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~L~~~~---~~~~lp~~-------~~~l~~L~~L~l~~~~l~- 411 (700)
.....++.++|++|++..- ....+.+.++|+..++++-. ....+|+. +-.+++|++++||.|.+.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 3445555556666554321 12223444555555555531 11122222 234456666666666444
Q ss_pred ----ccchhhhcCCCCCEEecccccCccccch-------------hhhcCCCccceeeccccCcccccCcccchHHHHhc
Q 005367 412 ----ELPEELKALVNLRCLNLDWAGELVKVPQ-------------QLLSNFSRLRVLRMFATGLISFYSWHENVAEELLG 474 (700)
Q Consensus 412 ----~lp~~~~~l~~L~~L~l~~~~~~~~~p~-------------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 474 (700)
.+...+.++..|++|.+.+|.. +.... ..++.-++|+.+....|++... ........+..
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Gl-g~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~--ga~~~A~~~~~ 183 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGL-GPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG--GATALAEAFQS 183 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCC-ChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc--cHHHHHHHHHh
Confidence 2223345566666666666632 11111 1133455667766666655332 11223344555
Q ss_pred CCCcceEEEEEecc
Q 005367 475 LKYLEVLEITFRRF 488 (700)
Q Consensus 475 l~~L~~L~l~~~~~ 488 (700)
++.|+.+.+..|.+
T Consensus 184 ~~~leevr~~qN~I 197 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGI 197 (382)
T ss_pred ccccceEEEecccc
Confidence 66677777766665
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=2.8e-08 Score=94.20 Aligned_cols=224 Identities=17% Similarity=0.128 Sum_probs=133.1
Q ss_pred eEEEecCCCCcccc--cccccCCCcceEEEccCCcccc---cCCcccccccccceeccccCccc----ccchhhhcCCCC
Q 005367 353 LTLFLNRNPLTTIA--GGFFQSMPCLTVLKMSGNETLR---QLPMGISKLVSLQLLDISYTRVR----ELPEELKALVNL 423 (700)
Q Consensus 353 ~~L~l~~~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~---~lp~~~~~l~~L~~L~l~~~~l~----~lp~~~~~l~~L 423 (700)
..|.+.++.+.... ..+-..+..++.+||.+| .++ ++...+.+||+|++|+++.|++. ++| -...+|
T Consensus 48 ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl 123 (418)
T KOG2982|consen 48 ELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNL 123 (418)
T ss_pred hhheecCCCCCcchhHHHHHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccce
Confidence 34555555544332 222345677777777777 333 34444566778888888877655 333 245678
Q ss_pred CEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcceEEEEEecchhhHhhhhccccccc
Q 005367 424 RCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEITFRRFEAYQTFLSSQKLRSC 503 (700)
Q Consensus 424 ~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 503 (700)
+.|-+.|+..-..-....+..+|++++|+++.|.......- ...... --+.+++|+...|....+....+.....++
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~D-d~c~e~--~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn 200 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLD-DNCIED--WSTEVLTLHQLPCLEQLWLNKNKLSRIFPN 200 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccc-cccccc--cchhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence 88877776432222223366778888888887743221110 000000 123566777777877777777777777788
Q ss_pred chhhhccccCCCceeeecCcCccccccEEEEeccccccceeecccccccccCCccccCCccEEeeecCcCccccc-----
Q 005367 504 TQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLT----- 578 (700)
Q Consensus 504 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~----- 578 (700)
+..+.+..|+-.+...-.+..+++.+..|.+..+..-..-..+.. ..|++|..|.+.+.+.+..+.
T Consensus 201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~L---------n~f~~l~dlRv~~~Pl~d~l~~~err 271 (418)
T KOG2982|consen 201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDAL---------NGFPQLVDLRVSENPLSDPLRGGERR 271 (418)
T ss_pred chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHH---------cCCchhheeeccCCcccccccCCcce
Confidence 888888887754444444555566666666655442222222333 368889999998887666653
Q ss_pred --ccccCCCCceEEee
Q 005367 579 --FLVFAPNLKSISVC 592 (700)
Q Consensus 579 --~l~~l~~L~~L~l~ 592 (700)
.++.++++++|+=+
T Consensus 272 ~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 272 FLLIARLTKVQVLNGS 287 (418)
T ss_pred EEEEeeccceEEecCc
Confidence 25677888877533
No 51
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.49 E-value=1.6e-05 Score=83.93 Aligned_cols=263 Identities=14% Similarity=0.137 Sum_probs=144.2
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCC---CEEEEEEeCCccCHHHHHHHHHHHcC---CCCCCCCCccHHHHHHHHHHHhc-
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDF---DYVIWVVVSKDLQLEKIQETIRKKIG---LCNDSWKNKSLEEKAQDIFKTLS- 73 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f---~~~~wv~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~l~~~l~- 73 (700)
++|+|||++++++++......... -.++|+++....+...++..+++++. ...+. ...+..+....+...+.
T Consensus 48 ~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~~~l~~~l~~ 126 (365)
T TIGR02928 48 KTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPT-TGLSTSEVFRRLYKELNE 126 (365)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCC-CCCCHHHHHHHHHHHHHh
Confidence 589999999999998752111111 25678888887788899999999883 22111 22344555666666663
Q ss_pred -cCcEEEEEcCCCchh-----hhhhhcCc-----CC-CCcEEEEecCchhhhhccc-------CcceEeccCCChHhHHH
Q 005367 74 -KKKFALLLDDLWERV-----DLKKIGVP-----LP-KNSAVVFTTRFVDVCGRME-------ARRTFKVECLSDEAAWE 134 (700)
Q Consensus 74 -~~r~LlVlDdv~~~~-----~~~~l~~~-----~~-~gs~iiiTTr~~~~~~~~~-------~~~~~~l~~L~~~~a~~ 134 (700)
+++++||||+++... .+..+... .+ ....+|.+|+..+....+. ....+.+++++.+|..+
T Consensus 127 ~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~ 206 (365)
T TIGR02928 127 RGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRD 206 (365)
T ss_pred cCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHH
Confidence 467899999998771 12233221 11 1234455555443322221 12468999999999999
Q ss_pred HHHHHhccc--ccCCCCChHHHHHHHHHHhCCCc-hHHHHHHHH--hc--cC---CChHHHHHHHHHHHhhhhhccCcch
Q 005367 135 LFREKVGEE--TIESHHSIPELAQTVAKECGGLP-LALITIGRA--MA--YK---KTPEEWRYAIEVLRRSASEFADLGK 204 (700)
Q Consensus 135 l~~~~~~~~--~~~~~~~~~~~~~~i~~~~~g~P-lai~~~~~~--l~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~ 204 (700)
++..++... .....++.-+.+..++...+|.| .|+.++-.. ++ .. -+.+......+....
T Consensus 207 il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~~---------- 276 (365)
T TIGR02928 207 ILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIEK---------- 276 (365)
T ss_pred HHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----------
Confidence 999887421 11122233345555666667777 444333211 11 11 244444444443321
Q ss_pred hhccchhcccCCCCccchhHHHhhhcCC--CCCceeeHHHHHHHHH--HcCCCCccccccchhhHHHHHHHHHhhhhccc
Q 005367 205 EVYPLLKFSYDCLPNDAIRSCFLYCCLY--PEDESIDKRDLIDCWI--CEGFLDEAKFGTQNQGYYIVGTLVHACLLEEV 280 (700)
Q Consensus 205 ~~~~~l~~sy~~L~~~~~~~~~l~~~~f--p~~~~i~~~~l~~~w~--~~g~~~~~~~~~~~~~~~~~~~L~~~sli~~~ 280 (700)
....-.+..||. +.+..+..++.. ..+..+...++...+. ++.+ . ..+.......+++..|...+++...
T Consensus 277 ---~~~~~~i~~l~~-~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~-~-~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 277 ---DRLLELIRGLPT-HSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDI-G-VDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred ---HHHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhc-C-CCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 112234557776 455444333311 1334455555555321 2211 1 1134446677788888888888753
No 52
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.45 E-value=6e-07 Score=90.21 Aligned_cols=276 Identities=18% Similarity=0.154 Sum_probs=176.4
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCC-CEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDF-DYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~Ll 79 (700)
.||||||+++-++.+ . ...| +.+.+++...-.+...+.-.++..++... ..-+.....+..+...+|.++
T Consensus 22 ~ggvgkttl~~~~a~-~---~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~-----~~g~~~~~~~~~~~~~rr~ll 92 (414)
T COG3903 22 AGGVGKTTLALQAAH-A---ASEYADGVAFVDLAPITDPALVFPTLAGALGLHV-----QPGDSAVDTLVRRIGDRRALL 92 (414)
T ss_pred cCccceehhhhhhHh-H---hhhcccceeeeeccccCchhHhHHHHHhhccccc-----ccchHHHHHHHHHHhhhhHHH
Confidence 489999999999999 4 4455 66677777777778888888888787654 222344556667778899999
Q ss_pred EEcCCCchhh-----hhhhcCcCCCCcEEEEecCchhhhhcccCcceEeccCCChH-hHHHHHHHHhcccc--cCCCCCh
Q 005367 80 LLDDLWERVD-----LKKIGVPLPKNSAVVFTTRFVDVCGRMEARRTFKVECLSDE-AAWELFREKVGEET--IESHHSI 151 (700)
Q Consensus 80 VlDdv~~~~~-----~~~l~~~~~~gs~iiiTTr~~~~~~~~~~~~~~~l~~L~~~-~a~~l~~~~~~~~~--~~~~~~~ 151 (700)
|+||..+..+ +..+... .+.-.|+.|+|+.... ..+..+.+++|+.. ++.++|...+.... .......
T Consensus 93 vldncehl~~~~a~~i~all~~-~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~ 168 (414)
T COG3903 93 VLDNCEHLLDACAALIVALLGA-CPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDDN 168 (414)
T ss_pred HhcCcHHHHHHHHHHHHHHHcc-chhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccceeecCCc
Confidence 9999976632 2222221 1156688898854332 34567788888875 79999888874322 2334555
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHhccCC---ChHHHHHHHHHHHhhhhhccCcchhhccchhcccCCCCccchhHHHhh
Q 005367 152 PELAQTVAKECGGLPLALITIGRAMAYKK---TPEEWRYAIEVLRRSASEFADLGKEVYPLLKFSYDCLPNDAIRSCFLY 228 (700)
Q Consensus 152 ~~~~~~i~~~~~g~Plai~~~~~~l~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~~~~~l~ 228 (700)
...+.+|.++.+|.|++|..++...+.-- ..+.+++....+.................+.+||.-|.. ..+.-|..
T Consensus 169 ~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg-we~~~~~r 247 (414)
T COG3903 169 AAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG-WERALFGR 247 (414)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh-HHHHHhcc
Confidence 78899999999999999999998886531 122223322222222111111124677889999999999 78899999
Q ss_pred hcCCCCCceeeHHHHHHHHHHcCCCCccccccchhhHHHHHHHHHhhhhccc---ccCcEeehHHHHHHHHH
Q 005367 229 CCLYPEDESIDKRDLIDCWICEGFLDEAKFGTQNQGYYIVGTLVHACLLEEV---EEDQVKMHDVIRDMALW 297 (700)
Q Consensus 229 ~~~fp~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~~L~~~sli~~~---~~~~~~~h~li~~~~~~ 297 (700)
++.|...+... ...|...|-.. ..........+-.+++++++... ....|+.-+-.+.|...
T Consensus 248 La~~~g~f~~~----l~~~~a~g~~~---~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yala 312 (414)
T COG3903 248 LAVFVGGFDLG----LALAVAAGADV---DVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALA 312 (414)
T ss_pred hhhhhhhhccc----HHHHHhcCCcc---ccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999887544 22333323111 11223444456667777776443 33444444444444443
No 53
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.35 E-value=2.3e-06 Score=83.96 Aligned_cols=166 Identities=19% Similarity=0.209 Sum_probs=83.7
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHH---------HHHHcCC--CCCC------CCCccHHH
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQET---------IRKKIGL--CNDS------WKNKSLEE 63 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~---------i~~~~~~--~~~~------~~~~~~~~ 63 (700)
+.|+|||+|++++.+.. .+....++|+.............. +.+.+.. +... ........
T Consensus 28 ~rg~GKTsLl~~~~~~~---~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (234)
T PF01637_consen 28 PRGSGKTSLLKEFINEL---KEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLSEDSFS 104 (234)
T ss_dssp STTSSHHHHHHHHHHHC---T--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G-
T ss_pred CCcCCHHHHHHHHHHHh---hhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHH
Confidence 47999999999999986 333334555554443322221111 1111211 1100 01223334
Q ss_pred HHHHHHHHhc--cCcEEEEEcCCCchh-h----------hhhhcCcC--CCCcEEEEecCchhhhhc--------ccCcc
Q 005367 64 KAQDIFKTLS--KKKFALLLDDLWERV-D----------LKKIGVPL--PKNSAVVFTTRFVDVCGR--------MEARR 120 (700)
Q Consensus 64 ~~~~l~~~l~--~~r~LlVlDdv~~~~-~----------~~~l~~~~--~~gs~iiiTTr~~~~~~~--------~~~~~ 120 (700)
....+.+.+. +++++|||||+.... . +..+.... ..+..+|+++....+... .....
T Consensus 105 ~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~ 184 (234)
T PF01637_consen 105 ALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFS 184 (234)
T ss_dssp -HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---
T ss_pred HHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccc
Confidence 4444444443 356999999997766 1 11111111 113444555444444322 12234
Q ss_pred eEeccCCChHhHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCCchHHHH
Q 005367 121 TFKVECLSDEAAWELFREKVGEETIESHHSIPELAQTVAKECGGLPLALIT 171 (700)
Q Consensus 121 ~~~l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 171 (700)
.+.+++++.+++++++.+.+... ... +..++..++|...+||+|..|..
T Consensus 185 ~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 185 HIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred eEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 59999999999999999876443 122 33477889999999999988764
No 54
>PLN03150 hypothetical protein; Provisional
Probab=98.33 E-value=1e-06 Score=98.60 Aligned_cols=104 Identities=25% Similarity=0.370 Sum_probs=57.2
Q ss_pred eeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccccccccceeccccCccc-ccchhhhcCCCCCEEeccc
Q 005367 352 LLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQLLDISYTRVR-ELPEELKALVNLRCLNLDW 430 (700)
Q Consensus 352 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~ 430 (700)
++.|+|++|.+.+..+..+..+++|+.|+|++|...+.+|..++.+++|+.|++++|++. .+|..++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 555566666555555545556666666666666433455555666666666666666555 5555566666666666665
Q ss_pred ccCccccchhhhcC-CCccceeecccc
Q 005367 431 AGELVKVPQQLLSN-FSRLRVLRMFAT 456 (700)
Q Consensus 431 ~~~~~~~p~~~~~~-l~~L~~L~l~~~ 456 (700)
|...+.+|.. ++. ..++..+++.+|
T Consensus 500 N~l~g~iP~~-l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 500 NSLSGRVPAA-LGGRLLHRASFNFTDN 525 (623)
T ss_pred CcccccCChH-HhhccccCceEEecCC
Confidence 5554455544 322 234444444444
No 55
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.32 E-value=5.7e-07 Score=67.07 Aligned_cols=58 Identities=36% Similarity=0.521 Sum_probs=28.2
Q ss_pred ceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCC-cccccccccceeccccCc
Q 005367 351 HLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLP-MGISKLVSLQLLDISYTR 409 (700)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~ 409 (700)
+|++|++++|.++.+++..|..+++|++|++++| .++.++ ..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4455555555555555544555555555555554 233332 234445555555555443
No 56
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.24 E-value=7.4e-06 Score=79.93 Aligned_cols=143 Identities=15% Similarity=0.158 Sum_probs=86.2
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
.+|+|||+||+++++.. .......+++++..-... .. .+...+++. -+||
T Consensus 46 ~~G~GKT~la~~~~~~~---~~~~~~~~~i~~~~~~~~---~~-----------------------~~~~~~~~~-~lLv 95 (226)
T TIGR03420 46 ESGSGKSHLLQAACAAA---EERGKSAIYLPLAELAQA---DP-----------------------EVLEGLEQA-DLVC 95 (226)
T ss_pred CCCCCHHHHHHHHHHHH---HhcCCcEEEEeHHHHHHh---HH-----------------------HHHhhcccC-CEEE
Confidence 47999999999999886 223344566664332110 00 111112222 3899
Q ss_pred EcCCCchh---h-hhhhcCcC----CCCcEEEEecCchh---------hhhcccCcceEeccCCChHhHHHHHHHHhccc
Q 005367 81 LDDLWERV---D-LKKIGVPL----PKNSAVVFTTRFVD---------VCGRMEARRTFKVECLSDEAAWELFREKVGEE 143 (700)
Q Consensus 81 lDdv~~~~---~-~~~l~~~~----~~gs~iiiTTr~~~---------~~~~~~~~~~~~l~~L~~~~a~~l~~~~~~~~ 143 (700)
|||++... + .+.+...+ ..+..+|+||+... +...+.....++++++++++...++...+...
T Consensus 96 IDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~ 175 (226)
T TIGR03420 96 LDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARR 175 (226)
T ss_pred EeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHc
Confidence 99997653 1 22232221 22568888887432 11222224578999999999999988766433
Q ss_pred ccCCCCChHHHHHHHHHHhCCCchHHHHHHHHh
Q 005367 144 TIESHHSIPELAQTVAKECGGLPLALITIGRAM 176 (700)
Q Consensus 144 ~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 176 (700)
+.. -.++....+++.+.|.|..+..+...+
T Consensus 176 ~~~---~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 176 GLQ---LPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred CCC---CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 322 236777888888999887776665443
No 57
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.22 E-value=1.3e-06 Score=65.03 Aligned_cols=58 Identities=33% Similarity=0.481 Sum_probs=54.2
Q ss_pred ccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCc
Q 005367 328 EMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNE 385 (700)
Q Consensus 328 ~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 385 (700)
++|+.|++++|.++.++ .|..+++|++|++++|.++.+++..|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 47899999999999998 68899999999999999999999999999999999999994
No 58
>PRK08727 hypothetical protein; Validated
Probab=98.17 E-value=1.5e-05 Score=77.62 Aligned_cols=136 Identities=14% Similarity=0.101 Sum_probs=82.4
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
.+|+|||.||.++++.. .+....+.|+++.+.. ..... ..+.+ .+--+||
T Consensus 49 ~~G~GKThL~~a~~~~~---~~~~~~~~y~~~~~~~---~~~~~-----------------------~~~~l-~~~dlLi 98 (233)
T PRK08727 49 PAGTGKTHLALALCAAA---EQAGRSSAYLPLQAAA---GRLRD-----------------------ALEAL-EGRSLVA 98 (233)
T ss_pred CCCCCHHHHHHHHHHHH---HHcCCcEEEEeHHHhh---hhHHH-----------------------HHHHH-hcCCEEE
Confidence 37999999999999886 3333456667632210 00011 11111 2334899
Q ss_pred EcCCCchh---hhh-hhcCc----CCCCcEEEEecCch---------hhhhcccCcceEeccCCChHhHHHHHHHHhccc
Q 005367 81 LDDLWERV---DLK-KIGVP----LPKNSAVVFTTRFV---------DVCGRMEARRTFKVECLSDEAAWELFREKVGEE 143 (700)
Q Consensus 81 lDdv~~~~---~~~-~l~~~----~~~gs~iiiTTr~~---------~~~~~~~~~~~~~l~~L~~~~a~~l~~~~~~~~ 143 (700)
+||+.... ++. .+... ...|..||+||+.. ++..++.....+++++++.++-.+++.+++...
T Consensus 99 IDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~ 178 (233)
T PRK08727 99 LDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRR 178 (233)
T ss_pred EeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHc
Confidence 99997431 111 12111 12367799998742 222222334689999999999999999887554
Q ss_pred ccCCCCChHHHHHHHHHHhCCCchHH
Q 005367 144 TIESHHSIPELAQTVAKECGGLPLAL 169 (700)
Q Consensus 144 ~~~~~~~~~~~~~~i~~~~~g~Plai 169 (700)
+...+ ++....|++.++|-.-.+
T Consensus 179 ~l~l~---~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 179 GLALD---EAAIDWLLTHGERELAGL 201 (233)
T ss_pred CCCCC---HHHHHHHHHhCCCCHHHH
Confidence 43333 788889999988655443
No 59
>PLN03150 hypothetical protein; Provisional
Probab=98.16 E-value=3.3e-06 Score=94.57 Aligned_cols=108 Identities=22% Similarity=0.329 Sum_probs=92.2
Q ss_pred cceeeeeccccccC-CC-CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccccccccceeccc
Q 005367 329 MGRRLSLMKNSIKN-LP-TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQLLDIS 406 (700)
Q Consensus 329 ~l~~l~l~~~~~~~-l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~ 406 (700)
.++.|++.++.+.. +| .+..+++|+.|+|++|.+.+..+..+..+++|+.|+|++|.....+|..++.+++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999998874 44 67889999999999999998888779999999999999997667899999999999999999
Q ss_pred cCccc-ccchhhhc-CCCCCEEecccccCccc
Q 005367 407 YTRVR-ELPEELKA-LVNLRCLNLDWAGELVK 436 (700)
Q Consensus 407 ~~~l~-~lp~~~~~-l~~L~~L~l~~~~~~~~ 436 (700)
+|++. .+|..++. ..++..+++.+|..+..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccC
Confidence 99998 89988775 35778888888754433
No 60
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.16 E-value=1.6e-05 Score=77.61 Aligned_cols=143 Identities=15% Similarity=0.136 Sum_probs=87.7
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
++|+|||+||.++++.. ......+.++.+..... . ..+.. +.+.+ --+|+
T Consensus 53 p~G~GKThLl~a~~~~~---~~~~~~v~y~~~~~~~~---~-------------------~~~~~----~~~~~-~dlli 102 (235)
T PRK08084 53 REGAGRSHLLHAACAEL---SQRGRAVGYVPLDKRAW---F-------------------VPEVL----EGMEQ-LSLVC 102 (235)
T ss_pred CCCCCHHHHHHHHHHHH---HhCCCeEEEEEHHHHhh---h-------------------hHHHH----HHhhh-CCEEE
Confidence 57999999999999886 22334566776532110 0 01111 11111 23899
Q ss_pred EcCCCch---hhhhh----hcCc-CCCC-cEEEEecCch---------hhhhcccCcceEeccCCChHhHHHHHHHHhcc
Q 005367 81 LDDLWER---VDLKK----IGVP-LPKN-SAVVFTTRFV---------DVCGRMEARRTFKVECLSDEAAWELFREKVGE 142 (700)
Q Consensus 81 lDdv~~~---~~~~~----l~~~-~~~g-s~iiiTTr~~---------~~~~~~~~~~~~~l~~L~~~~a~~l~~~~~~~ 142 (700)
|||+... .+|+. +... ...| .++|+||+.+ ++..++.....++++++++++-.+.+.+++..
T Consensus 103 iDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~ 182 (235)
T PRK08084 103 IDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARL 182 (235)
T ss_pred EeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHH
Confidence 9999653 22221 1122 2234 4799998753 33344445678999999999999998887754
Q ss_pred cccCCCCChHHHHHHHHHHhCCCchHHHHHHHHh
Q 005367 143 ETIESHHSIPELAQTVAKECGGLPLALITIGRAM 176 (700)
Q Consensus 143 ~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 176 (700)
.+...+ ++....|++.+.|..-++..+-..+
T Consensus 183 ~~~~l~---~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 183 RGFELP---EDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred cCCCCC---HHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 433333 8899999999988765554444333
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=7.9e-07 Score=84.62 Aligned_cols=205 Identities=17% Similarity=0.144 Sum_probs=111.4
Q ss_pred cceEEEccCCcccccCC--ccc-ccccccceeccccCcccc---cchhhhcCCCCCEEecccccCc---cccchhhhcCC
Q 005367 375 CLTVLKMSGNETLRQLP--MGI-SKLVSLQLLDISYTRVRE---LPEELKALVNLRCLNLDWAGEL---VKVPQQLLSNF 445 (700)
Q Consensus 375 ~L~~L~L~~~~~~~~lp--~~~-~~l~~L~~L~l~~~~l~~---lp~~~~~l~~L~~L~l~~~~~~---~~~p~~~~~~l 445 (700)
.+..|-+.++ .+...- ..+ ..+.+++.+|+.+|.|+. +.....+|+.|+.|+++.|..- +.+| ...
T Consensus 46 a~ellvln~~-~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp----~p~ 120 (418)
T KOG2982|consen 46 ALELLVLNGS-IIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP----LPL 120 (418)
T ss_pred chhhheecCC-CCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc----ccc
Confidence 4445556666 332211 122 347899999999999984 4445779999999999987532 2222 134
Q ss_pred CccceeeccccCcccccCcccchHHHHhcCCCcceEEEEEecchhhH--hhhhcccccccchhhhccccCCCceeeecCc
Q 005367 446 SRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEITFRRFEAYQ--TFLSSQKLRSCTQALFLHEFDREESIDVAGL 523 (700)
Q Consensus 446 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 523 (700)
.+|+.|-+.++.+.. ......+..+++++.|+++.|+...+. +-... ...+.+++|.+..|........-.+
T Consensus 121 ~nl~~lVLNgT~L~w-----~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e-~~s~~v~tlh~~~c~~~~w~~~~~l 194 (418)
T KOG2982|consen 121 KNLRVLVLNGTGLSW-----TQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIE-DWSTEVLTLHQLPCLEQLWLNKNKL 194 (418)
T ss_pred cceEEEEEcCCCCCh-----hhhhhhhhcchhhhhhhhccchhhhhcccccccc-ccchhhhhhhcCCcHHHHHHHHHhH
Confidence 588899888766522 233445678888888888887543221 00000 0112344444444443222222233
Q ss_pred Cc-cccccEEEEeccccccceeecccccccccCCccccCCccEEeeecCcCcccc---cccccCCCCceEEeeecccccc
Q 005367 524 AD-LEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHL---TFLVFAPNLKSISVCLCDDMEE 599 (700)
Q Consensus 524 ~~-l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l---~~l~~l~~L~~L~l~~~~~l~~ 599 (700)
.. ++++.++.+..|+.-+....... -.+|.+.-|.|..+ .+.++ ..+..+|.|..|.+.+.+-.+.
T Consensus 195 ~r~Fpnv~sv~v~e~PlK~~s~ek~s---------e~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 195 SRIFPNVNSVFVCEGPLKTESSEKGS---------EPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred HhhcccchheeeecCcccchhhcccC---------CCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCccccc
Confidence 33 46666666666652111111111 13445555555543 33333 3355667777776666655444
Q ss_pred c
Q 005367 600 I 600 (700)
Q Consensus 600 ~ 600 (700)
+
T Consensus 265 l 265 (418)
T KOG2982|consen 265 L 265 (418)
T ss_pred c
Confidence 3
No 62
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.03 E-value=8.9e-06 Score=71.69 Aligned_cols=107 Identities=21% Similarity=0.250 Sum_probs=75.1
Q ss_pred CCCCcHHHHHHHHHhhcccC--CCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCc-E
Q 005367 1 MGGVGKTTLLTQINNKFVDN--PTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKK-F 77 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r-~ 77 (700)
.+|+|||++++++++..... ...-..++|+.+....+...+...+++.++.+... ..+.++..+.+.+.+.+.+ .
T Consensus 12 ~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~~~l~~~~~~ 89 (131)
T PF13401_consen 12 PPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLIDALDRRRVV 89 (131)
T ss_dssp -TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHHHHHHHCTEE
T ss_pred CCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHHHHHHhcCCe
Confidence 37999999999999986210 00145677999988889999999999999876532 4567788888888887665 4
Q ss_pred EEEEcCCCch-h--hhhhhcCcC-CCCcEEEEecCc
Q 005367 78 ALLLDDLWER-V--DLKKIGVPL-PKNSAVVFTTRF 109 (700)
Q Consensus 78 LlVlDdv~~~-~--~~~~l~~~~-~~gs~iiiTTr~ 109 (700)
+||+|+++.. . .++.++... ..+.++|+..+.
T Consensus 90 ~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 90 LLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred EEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence 9999999776 2 234442222 336777776653
No 63
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.02 E-value=2.5e-06 Score=83.38 Aligned_cols=234 Identities=17% Similarity=0.123 Sum_probs=149.6
Q ss_pred ccccceeeeeccccccC-----C-CCCCCCCceeEEEecCCC----Ccccc------cccccCCCcceEEEccCCcccc-
Q 005367 326 GWEMGRRLSLMKNSIKN-----L-PTIPTCPHLLTLFLNRNP----LTTIA------GGFFQSMPCLTVLKMSGNETLR- 388 (700)
Q Consensus 326 ~~~~l~~l~l~~~~~~~-----l-~~~~~~~~L~~L~l~~~~----~~~~~------~~~~~~~~~L~~L~L~~~~~~~- 388 (700)
.+..++.+++++|.+.. + +.+.+-++|+..+++.-- ...++ ...+-.+++|++|+||+| .++
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN-A~G~ 106 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN-AFGP 106 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc-ccCc
Confidence 45788999999998752 1 245666788888887642 11122 112457889999999999 333
Q ss_pred c----CCcccccccccceeccccCccccc--------------chhhhcCCCCCEEecccccCccccchh----hhcCCC
Q 005367 389 Q----LPMGISKLVSLQLLDISYTRVREL--------------PEELKALVNLRCLNLDWAGELVKVPQQ----LLSNFS 446 (700)
Q Consensus 389 ~----lp~~~~~l~~L~~L~l~~~~l~~l--------------p~~~~~l~~L~~L~l~~~~~~~~~p~~----~~~~l~ 446 (700)
. +-+-+..+..|++|.+.+|.+... -+....-+.|+.+..++| ++.+.+.. .+...+
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSHP 185 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhcc
Confidence 2 222355688999999999987621 122456779999988877 44544432 356778
Q ss_pred ccceeeccccCcccccCcccchHHHHhcCCCcceEEEEEecchhhHhhhhcccccccchhhhccccCCCceeeecCcCcc
Q 005367 447 RLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADL 526 (700)
Q Consensus 447 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l 526 (700)
.|+.+.+..|.+..-.. ......+..|++|+.|++..|.++.-....-. ..++.+
T Consensus 186 ~leevr~~qN~I~~eG~--~al~eal~~~~~LevLdl~DNtft~egs~~La-----------------------kaL~s~ 240 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGV--TALAEALEHCPHLEVLDLRDNTFTLEGSVALA-----------------------KALSSW 240 (382)
T ss_pred ccceEEEecccccCchh--HHHHHHHHhCCcceeeecccchhhhHHHHHHH-----------------------HHhccc
Confidence 99999999888744211 34456788999999999999988654432211 134455
Q ss_pred ccccEEEEeccccccceee----cccccccccCCccccCCccEEeeecCcCccc------ccccccCCCCceEEeeeccc
Q 005367 527 EQLNTLIFYSCDWIKGLKI----DYKDMVQKSRQPYVFRSLEEVTVRFCRKLKH------LTFLVFAPNLKSISVCLCDD 596 (700)
Q Consensus 527 ~~L~~L~l~~~~~l~~~~~----~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~------l~~l~~l~~L~~L~l~~~~~ 596 (700)
++|++|.+++|..-+ -.. ..+. ...|+|+.|.+.+|. ++. ...+...|.|++|.|++|..
T Consensus 241 ~~L~El~l~dcll~~-~Ga~a~~~al~--------~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 241 PHLRELNLGDCLLEN-EGAIAFVDALK--------ESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred chheeeccccccccc-ccHHHHHHHHh--------ccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 677777777765211 111 1111 236788888888763 222 11245577788888887643
No 64
>PRK09087 hypothetical protein; Validated
Probab=98.00 E-value=3.9e-05 Score=74.05 Aligned_cols=96 Identities=14% Similarity=0.172 Sum_probs=66.1
Q ss_pred EEEEcCCCch----hhhhhhcCc-CCCCcEEEEecCc---------hhhhhcccCcceEeccCCChHhHHHHHHHHhccc
Q 005367 78 ALLLDDLWER----VDLKKIGVP-LPKNSAVVFTTRF---------VDVCGRMEARRTFKVECLSDEAAWELFREKVGEE 143 (700)
Q Consensus 78 LlVlDdv~~~----~~~~~l~~~-~~~gs~iiiTTr~---------~~~~~~~~~~~~~~l~~L~~~~a~~l~~~~~~~~ 143 (700)
+|++||+... +++-.+... ...|..||+|++. +++..++.....++++++++++-.+++.+.+...
T Consensus 90 ~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~ 169 (226)
T PRK09087 90 PVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADR 169 (226)
T ss_pred eEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHc
Confidence 8888999543 222222222 2338889999873 3333444556789999999999999999998654
Q ss_pred ccCCCCChHHHHHHHHHHhCCCchHHHHHHHHh
Q 005367 144 TIESHHSIPELAQTVAKECGGLPLALITIGRAM 176 (700)
Q Consensus 144 ~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 176 (700)
+...+ ++....|++.+.|...++..+-..|
T Consensus 170 ~~~l~---~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 170 QLYVD---PHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred CCCCC---HHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 43333 8899999999988877666544333
No 65
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.99 E-value=2.4e-07 Score=98.18 Aligned_cols=180 Identities=19% Similarity=0.229 Sum_probs=108.6
Q ss_pred CccccccccceeeeeccccccCCCCCCCC-CceeEEEecCCC------Cccccccccc--CCCcceEEEccCCcccccCC
Q 005367 321 PADVRGWEMGRRLSLMKNSIKNLPTIPTC-PHLLTLFLNRNP------LTTIAGGFFQ--SMPCLTVLKMSGNETLRQLP 391 (700)
Q Consensus 321 ~~~~~~~~~l~~l~l~~~~~~~l~~~~~~-~~L~~L~l~~~~------~~~~~~~~~~--~~~~L~~L~L~~~~~~~~lp 391 (700)
|-.+-.+..|++|-+.++++..+-.+..+ ..|..|...+.. ++.-..++.. .+-.|.+.+.++| .+..+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN-~L~~mD 180 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYN-RLVLMD 180 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchh-hHHhHH
Confidence 45666678899999998887654333222 233444333321 1111111111 2334666667777 455555
Q ss_pred cccccccccceeccccCcccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHH
Q 005367 392 MGISKLVSLQLLDISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEE 471 (700)
Q Consensus 392 ~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 471 (700)
.++.-++.|+.|+|++|++.... .+..|+.|++|||++| .+..+|.-....+ +|+.|.+++|.+. ....
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~lrnN~l~--------tL~g 249 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLNLRNNALT--------TLRG 249 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhh-hheeeeecccHHH--------hhhh
Confidence 56666788888888888887664 6777888888888877 3555554212232 3778888777653 2456
Q ss_pred HhcCCCcceEEEEEecchhhHhhhhcccccccchhhhccccC
Q 005367 472 LLGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFD 513 (700)
Q Consensus 472 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 513 (700)
+.++++|+.|++++|-+....++...- ....|+.|.|.+++
T Consensus 250 ie~LksL~~LDlsyNll~~hseL~pLw-sLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYNLLSEHSELEPLW-SLSSLIVLWLEGNP 290 (1096)
T ss_pred HHhhhhhhccchhHhhhhcchhhhHHH-HHHHHHHHhhcCCc
Confidence 777788888888887776555443322 22367777787776
No 66
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.99 E-value=0.00015 Score=77.38 Aligned_cols=147 Identities=14% Similarity=0.130 Sum_probs=86.2
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHH-hccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKT-LSKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~r~Ll 79 (700)
++|+|||++|+.+++.. ...| +.++.. ....+.+..+ .+..... ..+++.+|
T Consensus 44 ppGtGKTtLA~~ia~~~---~~~~---~~l~a~--~~~~~~ir~i-------------------i~~~~~~~~~g~~~vL 96 (413)
T PRK13342 44 PPGTGKTTLARIIAGAT---DAPF---EALSAV--TSGVKDLREV-------------------IEEARQRRSAGRRTIL 96 (413)
T ss_pred CCCCCHHHHHHHHHHHh---CCCE---EEEecc--cccHHHHHHH-------------------HHHHHHhhhcCCceEE
Confidence 58999999999999886 3222 112211 1111111111 1111111 13578899
Q ss_pred EEcCCCch--hhhhhhcCcCCCCcEEEE--ecCchhh--hhcc-cCcceEeccCCChHhHHHHHHHHhcccccCCCCChH
Q 005367 80 LLDDLWER--VDLKKIGVPLPKNSAVVF--TTRFVDV--CGRM-EARRTFKVECLSDEAAWELFREKVGEETIESHHSIP 152 (700)
Q Consensus 80 VlDdv~~~--~~~~~l~~~~~~gs~iii--TTr~~~~--~~~~-~~~~~~~l~~L~~~~a~~l~~~~~~~~~~~~~~~~~ 152 (700)
++|+++.. .+.+.+...+..|..++| ||.+... -..+ ..-..+++.+++.++..+++.+.+...........+
T Consensus 97 ~IDEi~~l~~~~q~~LL~~le~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~ 176 (413)
T PRK13342 97 FIDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDD 176 (413)
T ss_pred EEechhhhCHHHHHHHHHHhhcCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCH
Confidence 99999865 345555555555666665 3443321 1111 122578999999999999998876432111113346
Q ss_pred HHHHHHHHHhCCCchHHHHHHH
Q 005367 153 ELAQTVAKECGGLPLALITIGR 174 (700)
Q Consensus 153 ~~~~~i~~~~~g~Plai~~~~~ 174 (700)
+....+++.++|.+..+..+..
T Consensus 177 ~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 177 EALDALARLANGDARRALNLLE 198 (413)
T ss_pred HHHHHHHHhCCCCHHHHHHHHH
Confidence 7888999999998866544443
No 67
>PRK05642 DNA replication initiation factor; Validated
Probab=97.99 E-value=4.1e-05 Score=74.61 Aligned_cols=142 Identities=15% Similarity=0.219 Sum_probs=85.7
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEEE
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALLL 81 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVl 81 (700)
+|+|||.||.++++.. .+.-..++|++..+ +... ...+.+.+.+-. +||+
T Consensus 54 ~G~GKTHLl~a~~~~~---~~~~~~v~y~~~~~------~~~~--------------------~~~~~~~~~~~d-~Lii 103 (234)
T PRK05642 54 DGVGRSHLLQAACLRF---EQRGEPAVYLPLAE------LLDR--------------------GPELLDNLEQYE-LVCL 103 (234)
T ss_pred CCCCHHHHHHHHHHHH---HhCCCcEEEeeHHH------HHhh--------------------hHHHHHhhhhCC-EEEE
Confidence 7999999999999876 22234567776432 1110 011222233222 6889
Q ss_pred cCCCch---hhhhh-hcCcC----CCCcEEEEecCchhh---------hhcccCcceEeccCCChHhHHHHHHHHhcccc
Q 005367 82 DDLWER---VDLKK-IGVPL----PKNSAVVFTTRFVDV---------CGRMEARRTFKVECLSDEAAWELFREKVGEET 144 (700)
Q Consensus 82 Ddv~~~---~~~~~-l~~~~----~~gs~iiiTTr~~~~---------~~~~~~~~~~~l~~L~~~~a~~l~~~~~~~~~ 144 (700)
||+.-. ..|+. +...+ ..|..||+|++...- ..++.....++++++++++-.+.+.+++...+
T Consensus 104 DDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~ 183 (234)
T PRK05642 104 DDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG 183 (234)
T ss_pred echhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 999633 22222 22222 237889998874222 12223346789999999999999987764433
Q ss_pred cCCCCChHHHHHHHHHHhCCCchHHHHHHHHh
Q 005367 145 IESHHSIPELAQTVAKECGGLPLALITIGRAM 176 (700)
Q Consensus 145 ~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 176 (700)
...+ ++....+++.+.|-.-++..+-..|
T Consensus 184 ~~l~---~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 184 LHLT---DEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred CCCC---HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 2223 7888889888888765555444333
No 68
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.97 E-value=1.2e-06 Score=93.75 Aligned_cols=104 Identities=29% Similarity=0.492 Sum_probs=55.8
Q ss_pred ccccccceeeeeccccccCCCC-CCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccccccccce
Q 005367 324 VRGWEMGRRLSLMKNSIKNLPT-IPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQL 402 (700)
Q Consensus 324 ~~~~~~l~~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~ 402 (700)
+..++.++.+++.+|.++.+.. +..+++|++|++++|.|+++.. +..++.|+.|++++| .+..+. .+..++.|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGN-LISDIS-GLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccC-cchhcc-CCccchhhhc
Confidence 4445556666666666666655 5556666666666665555544 345555566666665 333332 3333555555
Q ss_pred eccccCcccccchh-hhcCCCCCEEecccc
Q 005367 403 LDISYTRVRELPEE-LKALVNLRCLNLDWA 431 (700)
Q Consensus 403 L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~ 431 (700)
+++++|.+..+... ...+.+|+.+.+.+|
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhccCC
Confidence 55555555544332 344555555555554
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.95 E-value=1.5e-06 Score=95.58 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=23.7
Q ss_pred cceeeccCcccccccccCCCC--CCCccEEEEcCCCCCCCCC
Q 005367 623 LQRLRLEGLGRLKSIYWKPLP--LPRLKELEVRGCDSLEKLP 662 (700)
Q Consensus 623 L~~L~l~~c~~l~~l~~~~~~--~~~L~~L~i~~C~~L~~lp 662 (700)
++.|+++.|...+.-...... +.++..+++.+|+.++.-.
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 444 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKS 444 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccccchh
Confidence 677777776655543322111 5666777777777766544
No 70
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.90 E-value=2.4e-06 Score=91.27 Aligned_cols=124 Identities=26% Similarity=0.352 Sum_probs=64.5
Q ss_pred cceeeeeccccccCC-CCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccccccccceecccc
Q 005367 329 MGRRLSLMKNSIKNL-PTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQLLDISY 407 (700)
Q Consensus 329 ~l~~l~l~~~~~~~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~ 407 (700)
.+..+.+..|.+..+ ..+..+.+|..|++.+|.+.++... +..+++|++|++++| .++.+. .+..+..|+.|++.+
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELNLSG 149 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheecccc-cccccc-chhhccchhhheecc
Confidence 444444555555542 2355566666666666665554442 345666666666666 444442 344455566666666
Q ss_pred CcccccchhhhcCCCCCEEecccccCccccch-hhhcCCCccceeeccccCc
Q 005367 408 TRVRELPEELKALVNLRCLNLDWAGELVKVPQ-QLLSNFSRLRVLRMFATGL 458 (700)
Q Consensus 408 ~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~~l~~L~~L~l~~~~~ 458 (700)
|.+..+. .+..+.+|+.+++++|.. ..+.. . ...+.+|+.+.+.+|.+
T Consensus 150 N~i~~~~-~~~~l~~L~~l~l~~n~i-~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 150 NLISDIS-GLESLKSLKLLDLSYNRI-VDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred Ccchhcc-CCccchhhhcccCCcchh-hhhhhhh-hhhccchHHHhccCCch
Confidence 6655442 333356666666665532 22222 1 23555666666655544
No 71
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.88 E-value=0.00016 Score=71.17 Aligned_cols=144 Identities=17% Similarity=0.140 Sum_probs=94.2
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
++|+|||+||+.++... +++- .+||..+-.....+..+.++++-.. ...+.++|.+|+
T Consensus 170 ppG~GKTtlArlia~ts---k~~S--yrfvelSAt~a~t~dvR~ife~aq~-----------------~~~l~krkTilF 227 (554)
T KOG2028|consen 170 PPGTGKTTLARLIASTS---KKHS--YRFVELSATNAKTNDVRDIFEQAQN-----------------EKSLTKRKTILF 227 (554)
T ss_pred CCCCchHHHHHHHHhhc---CCCc--eEEEEEeccccchHHHHHHHHHHHH-----------------HHhhhcceeEEE
Confidence 58999999999999987 3322 6677766665555555555555421 112457899999
Q ss_pred EcCCC--chhhhhhhcCcCCCCcEEEE--ecCchhhh---hcccCcceEeccCCChHhHHHHHHHHhc---cccc---CC
Q 005367 81 LDDLW--ERVDLKKIGVPLPKNSAVVF--TTRFVDVC---GRMEARRTFKVECLSDEAAWELFREKVG---EETI---ES 147 (700)
Q Consensus 81 lDdv~--~~~~~~~l~~~~~~gs~iii--TTr~~~~~---~~~~~~~~~~l~~L~~~~a~~l~~~~~~---~~~~---~~ 147 (700)
+|.|. +..|-+-+++....|..++| ||.+++.- ..+..-.++.++.|..++...++.+... +... ..
T Consensus 228 iDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l 307 (554)
T KOG2028|consen 228 IDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPL 307 (554)
T ss_pred eHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCC
Confidence 99995 33566777666777888887 77765541 1112226789999999999888877442 2221 11
Q ss_pred CC----ChHHHHHHHHHHhCCCc
Q 005367 148 HH----SIPELAQTVAKECGGLP 166 (700)
Q Consensus 148 ~~----~~~~~~~~i~~~~~g~P 166 (700)
+- -...+.+-++..|+|-.
T Consensus 308 ~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 308 PNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred CCcchhhhHHHHHHHHHhcCchH
Confidence 11 23466777788888864
No 72
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.78 E-value=0.00015 Score=69.73 Aligned_cols=153 Identities=16% Similarity=0.179 Sum_probs=89.2
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEEE
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALLL 81 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVl 81 (700)
.|+|||.|..++++...... .-..+++++ ..++...+...+.. ... ..++..++ .-=+|+|
T Consensus 43 ~G~GKTHLL~Ai~~~~~~~~-~~~~v~y~~------~~~f~~~~~~~~~~-------~~~----~~~~~~~~-~~DlL~i 103 (219)
T PF00308_consen 43 SGLGKTHLLQAIANEAQKQH-PGKRVVYLS------AEEFIREFADALRD-------GEI----EEFKDRLR-SADLLII 103 (219)
T ss_dssp TTSSHHHHHHHHHHHHHHHC-TTS-EEEEE------HHHHHHHHHHHHHT-------TSH----HHHHHHHC-TSSEEEE
T ss_pred CCCCHHHHHHHHHHHHHhcc-ccccceeec------HHHHHHHHHHHHHc-------ccc----hhhhhhhh-cCCEEEE
Confidence 69999999999988862111 223566665 34445555555521 112 22333333 3348899
Q ss_pred cCCCchhh---hh-hhcC---c-CCCCcEEEEecCch-h--------hhhcccCcceEeccCCChHhHHHHHHHHhcccc
Q 005367 82 DDLWERVD---LK-KIGV---P-LPKNSAVVFTTRFV-D--------VCGRMEARRTFKVECLSDEAAWELFREKVGEET 144 (700)
Q Consensus 82 Ddv~~~~~---~~-~l~~---~-~~~gs~iiiTTr~~-~--------~~~~~~~~~~~~l~~L~~~~a~~l~~~~~~~~~ 144 (700)
||++.... |. .+.. . ...|.+||+|++.. . +..++.....+++++.++++-.+++.+.+...+
T Consensus 104 DDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~ 183 (219)
T PF00308_consen 104 DDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERG 183 (219)
T ss_dssp ETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT
T ss_pred ecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhC
Confidence 99976521 11 1111 1 23388999999532 2 222333456899999999999999999997655
Q ss_pred cCCCCChHHHHHHHHHHhCCCchHHHHHHHHh
Q 005367 145 IESHHSIPELAQTVAKECGGLPLALITIGRAM 176 (700)
Q Consensus 145 ~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 176 (700)
...+ ++++.-|++.+.+..-.+..+-..|
T Consensus 184 ~~l~---~~v~~~l~~~~~~~~r~L~~~l~~l 212 (219)
T PF00308_consen 184 IELP---EEVIEYLARRFRRDVRELEGALNRL 212 (219)
T ss_dssp --S----HHHHHHHHHHTTSSHHHHHHHHHHH
T ss_pred CCCc---HHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 4434 7888888888887776665554444
No 73
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.78 E-value=0.00015 Score=67.93 Aligned_cols=70 Identities=17% Similarity=0.174 Sum_probs=44.1
Q ss_pred cEEEEecCchhhhhcccC--cceEeccCCChHhHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCCchHHHHHH
Q 005367 101 SAVVFTTRFVDVCGRMEA--RRTFKVECLSDEAAWELFREKVGEETIESHHSIPELAQTVAKECGGLPLALITIG 173 (700)
Q Consensus 101 s~iiiTTr~~~~~~~~~~--~~~~~l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 173 (700)
.-|=.|||...+-..+.. ....+++..+.+|-.+.+.+.+..-++..+ ++.+.+|++.+.|-|.-.+-+-
T Consensus 151 TligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~---~~~~~~Ia~rsrGtPRiAnrll 222 (233)
T PF05496_consen 151 TLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEID---EDAAEEIARRSRGTPRIANRLL 222 (233)
T ss_dssp EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE----HHHHHHHHHCTTTSHHHHHHHH
T ss_pred eEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHhcCCChHHHHHHH
Confidence 334468886554333332 234589999999999999988855443333 8999999999999996544333
No 74
>PF13173 AAA_14: AAA domain
Probab=97.76 E-value=5.4e-05 Score=66.20 Aligned_cols=108 Identities=16% Similarity=0.152 Sum_probs=69.5
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
+.|+||||++++++++. . ....+++++..+.......... ..+.+.+....++.++|
T Consensus 10 ~R~vGKTtll~~~~~~~---~-~~~~~~yi~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~i~ 66 (128)
T PF13173_consen 10 PRGVGKTTLLKQLAKDL---L-PPENILYINFDDPRDRRLADPD-------------------LLEYFLELIKPGKKYIF 66 (128)
T ss_pred CCCCCHHHHHHHHHHHh---c-ccccceeeccCCHHHHHHhhhh-------------------hHHHHHHhhccCCcEEE
Confidence 36999999999999997 2 5567788876554331111000 22223333334788999
Q ss_pred EcCCCchhhhhhhcCcCC---CCcEEEEecCchhhhhc-c-----cCcceEeccCCChHh
Q 005367 81 LDDLWERVDLKKIGVPLP---KNSAVVFTTRFVDVCGR-M-----EARRTFKVECLSDEA 131 (700)
Q Consensus 81 lDdv~~~~~~~~l~~~~~---~gs~iiiTTr~~~~~~~-~-----~~~~~~~l~~L~~~~ 131 (700)
||++....+|......+- ++.+|++|+........ . +....++|.||+-+|
T Consensus 67 iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 67 IDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred EehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 999988877666544432 25799999987665422 1 223568999998776
No 75
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.75 E-value=2.4e-06 Score=94.06 Aligned_cols=169 Identities=14% Similarity=0.150 Sum_probs=75.7
Q ss_pred hcCCCcceEEEEEecchhhHhhhhcccccccchhhhccccCCCceeeecCcC-ccccccEEEEeccccccceeecccccc
Q 005367 473 LGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLA-DLEQLNTLIFYSCDWIKGLKIDYKDMV 551 (700)
Q Consensus 473 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~l~~~~~~~~~~~ 551 (700)
..+++|+.|+++++.......+......+++|+.|.+..|..+++..+..+. .+++|++|++++|..+.+.......
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~-- 317 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALL-- 317 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHH--
Confidence 3345555555554442211111122222345555555555544444443333 3566777777777665432222222
Q ss_pred cccCCccccCCccEEeeecCcC---cccccc--cccCC--CCceEEeeeccccccccccccCCCCCCccCCCCCCCCccc
Q 005367 552 QKSRQPYVFRSLEEVTVRFCRK---LKHLTF--LVFAP--NLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPFAKLQ 624 (700)
Q Consensus 552 ~~~~~~~~~~~L~~L~l~~~~~---l~~l~~--l~~l~--~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~ 624 (700)
..+++|+.|.+..+.. ++.... +.... .+..+.+.+|+.+++... ...+ .....
T Consensus 318 ------~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l------------~~~~-~~~~~ 378 (482)
T KOG1947|consen 318 ------KNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSL------------SYCG-ISDLG 378 (482)
T ss_pred ------HhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhh------------hhhh-ccCcc
Confidence 2355555554444332 222211 11111 344444444444444321 0111 11111
Q ss_pred -eeeccCcccc-cccccCCCCCCCccEEEEcCCCCCCCCC
Q 005367 625 -RLRLEGLGRL-KSIYWKPLPLPRLKELEVRGCDSLEKLP 662 (700)
Q Consensus 625 -~L~l~~c~~l-~~l~~~~~~~~~L~~L~i~~C~~L~~lp 662 (700)
.+.+.+|+.+ ..+..-...+..|+.|+++.|...+.--
T Consensus 379 ~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~ 418 (482)
T KOG1947|consen 379 LELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKG 418 (482)
T ss_pred hHHHhcCCcccchHHHHHhccCCccceEecccCccccccc
Confidence 4556667666 2322222234458899999888777644
No 76
>PRK04195 replication factor C large subunit; Provisional
Probab=97.72 E-value=0.00079 Score=73.31 Aligned_cols=145 Identities=18% Similarity=0.208 Sum_probs=85.2
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
++|+|||++|+++++.. .|+. +-+++++..+... +..++....... .....++-+||
T Consensus 47 ppG~GKTtla~ala~el-----~~~~-ielnasd~r~~~~-i~~~i~~~~~~~----------------sl~~~~~kvIi 103 (482)
T PRK04195 47 PPGVGKTSLAHALANDY-----GWEV-IELNASDQRTADV-IERVAGEAATSG----------------SLFGARRKLIL 103 (482)
T ss_pred CCCCCHHHHHHHHHHHc-----CCCE-EEEcccccccHHH-HHHHHHHhhccC----------------cccCCCCeEEE
Confidence 58999999999999987 2333 3344444333222 222222221100 00113678999
Q ss_pred EcCCCchh------hhhhhcCcCC-CCcEEEEecCchhh-hh-cc-cCcceEeccCCChHhHHHHHHHHhcccccCCCCC
Q 005367 81 LDDLWERV------DLKKIGVPLP-KNSAVVFTTRFVDV-CG-RM-EARRTFKVECLSDEAAWELFREKVGEETIESHHS 150 (700)
Q Consensus 81 lDdv~~~~------~~~~l~~~~~-~gs~iiiTTr~~~~-~~-~~-~~~~~~~l~~L~~~~a~~l~~~~~~~~~~~~~~~ 150 (700)
||+++... .+..+...+. .+..||+|+.+..- .. .+ .....+++.+++.++....+.+.+...+...+
T Consensus 104 IDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~-- 181 (482)
T PRK04195 104 LDEVDGIHGNEDRGGARAILELIKKAKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD-- 181 (482)
T ss_pred EecCcccccccchhHHHHHHHHHHcCCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC--
Confidence 99997652 1333332222 25567776654221 11 11 12357899999999999998888765543333
Q ss_pred hHHHHHHHHHHhCCCchHHHH
Q 005367 151 IPELAQTVAKECGGLPLALIT 171 (700)
Q Consensus 151 ~~~~~~~i~~~~~g~Plai~~ 171 (700)
.+....|++.++|-...+..
T Consensus 182 -~eaL~~Ia~~s~GDlR~ain 201 (482)
T PRK04195 182 -DEALKEIAERSGGDLRSAIN 201 (482)
T ss_pred -HHHHHHHHHHcCCCHHHHHH
Confidence 68899999999986544433
No 77
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.72 E-value=5.8e-05 Score=68.29 Aligned_cols=103 Identities=25% Similarity=0.363 Sum_probs=82.1
Q ss_pred ccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCc--ccccccccceecc
Q 005367 328 EMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPM--GISKLVSLQLLDI 405 (700)
Q Consensus 328 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~--~~~~l~~L~~L~l 405 (700)
.....+++++|++.+++.|..++.|.+|.+.+|.++.+.+..-..+++|..|.|.+| .+..+.+ -+..|+.|++|.+
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeee
Confidence 356778999999999999999999999999999999998887677888999999999 4554432 3456788899988
Q ss_pred ccCcccccch----hhhcCCCCCEEecccc
Q 005367 406 SYTRVRELPE----ELKALVNLRCLNLDWA 431 (700)
Q Consensus 406 ~~~~l~~lp~----~~~~l~~L~~L~l~~~ 431 (700)
-+|.+.+-.. .+.++++|+.||..+.
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhh
Confidence 8888775442 2567888888887754
No 78
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.72 E-value=4.8e-05 Score=74.15 Aligned_cols=85 Identities=16% Similarity=0.205 Sum_probs=53.9
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCc--cCHHHHHHHHHHHcCCCCCCC-CCccHH---HHHHHHHHH-hc
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD--LQLEKIQETIRKKIGLCNDSW-KNKSLE---EKAQDIFKT-LS 73 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~~~~~~~~~-~~~~~~---~~~~~l~~~-l~ 73 (700)
++|+|||||+++++++. .. ++|+.++|+.+... .+..++++.+...+-...... ...... ......... -.
T Consensus 24 ~~G~GKTTLlr~I~n~l-~~-~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 101 (249)
T cd01128 24 PPKAGKTTLLQSIANAI-TK-NHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKAKRLVEH 101 (249)
T ss_pred CCCCCHHHHHHHHHhcc-cc-ccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 48999999999999997 22 38999999985555 689999999844332211110 111111 111222221 24
Q ss_pred cCcEEEEEcCCCch
Q 005367 74 KKKFALLLDDLWER 87 (700)
Q Consensus 74 ~~r~LlVlDdv~~~ 87 (700)
++++++++|++...
T Consensus 102 G~~vll~iDei~r~ 115 (249)
T cd01128 102 GKDVVILLDSITRL 115 (249)
T ss_pred CCCEEEEEECHHHh
Confidence 78999999999544
No 79
>PF14516 AAA_35: AAA-like domain
Probab=97.71 E-value=0.006 Score=62.86 Aligned_cols=167 Identities=14% Similarity=0.100 Sum_probs=96.3
Q ss_pred CCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCc-----cCHHHHHH----HHHHHcCCCCCC-----CCCccHHHHHHHH
Q 005367 3 GVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD-----LQLEKIQE----TIRKKIGLCNDS-----WKNKSLEEKAQDI 68 (700)
Q Consensus 3 GiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~----~i~~~~~~~~~~-----~~~~~~~~~~~~l 68 (700)
.+|||+|..++.+.. .+.-..+++++.... .+..++++ .+.++++....- ............+
T Consensus 41 q~GKTSll~~l~~~l---~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~ 117 (331)
T PF14516_consen 41 QMGKTSLLLRLLERL---QQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYF 117 (331)
T ss_pred cCCHHHHHHHHHHHH---HHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHH
Confidence 589999999999887 333345557775542 23454444 444455443200 0011112222223
Q ss_pred HHH-h--ccCcEEEEEcCCCchhh----hhhhcCc----------CCC-CcE--EEEecCchhhhhc-----ccCcceEe
Q 005367 69 FKT-L--SKKKFALLLDDLWERVD----LKKIGVP----------LPK-NSA--VVFTTRFVDVCGR-----MEARRTFK 123 (700)
Q Consensus 69 ~~~-l--~~~r~LlVlDdv~~~~~----~~~l~~~----------~~~-gs~--iiiTTr~~~~~~~-----~~~~~~~~ 123 (700)
.+. + ..++.+|+||+|+..-. .+++... .+. ..- |++.+........ +.....++
T Consensus 118 ~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~ 197 (331)
T PF14516_consen 118 EEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIE 197 (331)
T ss_pred HHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCCccccccee
Confidence 332 2 25899999999975522 1111111 111 112 2222221111111 12246799
Q ss_pred ccCCChHhHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCCchHHHHHHHHhccC
Q 005367 124 VECLSDEAAWELFREKVGEETIESHHSIPELAQTVAKECGGLPLALITIGRAMAYK 179 (700)
Q Consensus 124 l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~ 179 (700)
+++++.+|...|+.++-..-+ ....++|....||+|..+..++..+...
T Consensus 198 L~~Ft~~ev~~L~~~~~~~~~-------~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 198 LPDFTPEEVQELAQRYGLEFS-------QEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred CCCCCHHHHHHHHHhhhccCC-------HHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 999999999999987753322 3449999999999999999999999664
No 80
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.70 E-value=0.0011 Score=73.27 Aligned_cols=100 Identities=14% Similarity=0.137 Sum_probs=67.0
Q ss_pred cCcEEEEEcCCCchh--hhhhhcCc---CCCCcEEEEecCchhhh-hcccC-cceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWERV--DLKKIGVP---LPKNSAVVFTTRFVDVC-GRMEA-RRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~~--~~~~l~~~---~~~gs~iiiTTr~~~~~-~~~~~-~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
++.-++|||+++... .+..++.- .+.+.++|+||++..-. ..+.+ -..+.+..++.++..+.+.+.+..+++.
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 455689999998763 34444333 34477888877764432 22211 2578999999999999998887654433
Q ss_pred CCCChHHHHHHHHHHhCCCc-hHHHHHHHHh
Q 005367 147 SHHSIPELAQTVAKECGGLP-LALITIGRAM 176 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~P-lai~~~~~~l 176 (700)
. .++....|++.++|.. .|++.+-..+
T Consensus 198 i---d~eAL~lIA~~A~GsmRdALsLLdQAi 225 (830)
T PRK07003 198 F---EPQALRLLARAAQGSMRDALSLTDQAI 225 (830)
T ss_pred C---CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3 3788899999998854 5666644333
No 81
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.68 E-value=0.00029 Score=68.63 Aligned_cols=139 Identities=12% Similarity=0.077 Sum_probs=82.7
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
.+|+|||+||+++++.. ...-..+.++++..... . + ... .+.-+||
T Consensus 50 ~~G~GKT~La~ai~~~~---~~~~~~~~~i~~~~~~~------~----~--------------------~~~-~~~~~li 95 (227)
T PRK08903 50 EAGSGRSHLLQALVADA---SYGGRNARYLDAASPLL------A----F--------------------DFD-PEAELYA 95 (227)
T ss_pred CCCCCHHHHHHHHHHHH---HhCCCcEEEEehHHhHH------H----H--------------------hhc-ccCCEEE
Confidence 37999999999999876 22223445555432110 0 0 011 2334789
Q ss_pred EcCCCchh--hhhhhcCcC----CCCc-EEEEecCchhhhh--------cccCcceEeccCCChHhHHHHHHHHhccccc
Q 005367 81 LDDLWERV--DLKKIGVPL----PKNS-AVVFTTRFVDVCG--------RMEARRTFKVECLSDEAAWELFREKVGEETI 145 (700)
Q Consensus 81 lDdv~~~~--~~~~l~~~~----~~gs-~iiiTTr~~~~~~--------~~~~~~~~~l~~L~~~~a~~l~~~~~~~~~~ 145 (700)
+||++... ..+.+...+ ..+. .+|+|++...... .+.....++++++++++-..++.+.+...++
T Consensus 96 iDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v 175 (227)
T PRK08903 96 VDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGL 175 (227)
T ss_pred EeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 99996542 222222222 1244 3666666432211 2222468899999999877777765544332
Q ss_pred CCCCChHHHHHHHHHHhCCCchHHHHHHHHh
Q 005367 146 ESHHSIPELAQTVAKECGGLPLALITIGRAM 176 (700)
Q Consensus 146 ~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 176 (700)
.. .++....+++...|.+..+..+-..+
T Consensus 176 ~l---~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 176 QL---ADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred CC---CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 33 37888999999999998887776655
No 82
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.66 E-value=6.9e-05 Score=77.06 Aligned_cols=80 Identities=21% Similarity=0.303 Sum_probs=48.8
Q ss_pred cccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccccccccceeccc
Q 005367 327 WEMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQLLDIS 406 (700)
Q Consensus 327 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~ 406 (700)
+.+++.|++++|.++.+|.+. .+|+.|.+++|.--...++.+ .++|++|++++|..+..+|. +|+.|++.
T Consensus 51 ~~~l~~L~Is~c~L~sLP~LP--~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~ 120 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPVLP--NELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLEIK 120 (426)
T ss_pred hcCCCEEEeCCCCCcccCCCC--CCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEEeC
Confidence 456777888888777777432 368888887765222223323 35688888888766666664 35555565
Q ss_pred cCc---ccccchh
Q 005367 407 YTR---VRELPEE 416 (700)
Q Consensus 407 ~~~---l~~lp~~ 416 (700)
.+. +..+|.+
T Consensus 121 ~n~~~~L~~LPss 133 (426)
T PRK15386 121 GSATDSIKNVPNG 133 (426)
T ss_pred CCCCcccccCcch
Confidence 543 4456654
No 83
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.65 E-value=0.00057 Score=73.14 Aligned_cols=157 Identities=11% Similarity=0.128 Sum_probs=97.6
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEEE
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALLL 81 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVl 81 (700)
.|+|||.|++++++.... ...-..++++++ .++...+...+... ......+.+.+++ .-+||+
T Consensus 150 ~G~GKTHLl~Ai~~~l~~-~~~~~~v~yv~~------~~f~~~~~~~l~~~---------~~~~~~~~~~~~~-~dvLiI 212 (450)
T PRK14087 150 SGMGKTHLLKAAKNYIES-NFSDLKVSYMSG------DEFARKAVDILQKT---------HKEIEQFKNEICQ-NDVLII 212 (450)
T ss_pred CCCcHHHHHHHHHHHHHH-hCCCCeEEEEEH------HHHHHHHHHHHHHh---------hhHHHHHHHHhcc-CCEEEE
Confidence 699999999999986511 122234455543 45566666655321 0122334444433 348889
Q ss_pred cCCCchh----hhhhhcCc----CCCCcEEEEecCch---------hhhhcccCcceEeccCCChHhHHHHHHHHhcccc
Q 005367 82 DDLWERV----DLKKIGVP----LPKNSAVVFTTRFV---------DVCGRMEARRTFKVECLSDEAAWELFREKVGEET 144 (700)
Q Consensus 82 Ddv~~~~----~~~~l~~~----~~~gs~iiiTTr~~---------~~~~~~~~~~~~~l~~L~~~~a~~l~~~~~~~~~ 144 (700)
||+.... ..+.+..- ...|..||+|+... .+..++...-.+++++++.++-.+++.+++...+
T Consensus 213 DDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~g 292 (450)
T PRK14087 213 DDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQN 292 (450)
T ss_pred eccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcC
Confidence 9996442 12223222 23367789987532 2223333456788999999999999999985433
Q ss_pred cCCCCChHHHHHHHHHHhCCCchHHHHHHHHh
Q 005367 145 IESHHSIPELAQTVAKECGGLPLALITIGRAM 176 (700)
Q Consensus 145 ~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 176 (700)
.. ..-.++....|++.++|.|..+..+...+
T Consensus 293 l~-~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 293 IK-QEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred CC-CCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 11 13458999999999999998877766444
No 84
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.64 E-value=0.001 Score=68.15 Aligned_cols=144 Identities=14% Similarity=0.179 Sum_probs=86.3
Q ss_pred CCCCcHHHHHHHHHhhcc---cCCCCCCEEEEEEe-CCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCc
Q 005367 1 MGGVGKTTLLTQINNKFV---DNPTDFDYVIWVVV-SKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKK 76 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~---~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r 76 (700)
+.|+|||++|+++++..- ....+.|...|... +......+ ++++.+.+...+ ..+++
T Consensus 34 ~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~~~~~~~p------------------~~~~~ 94 (313)
T PRK05564 34 EDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNIIEEVNKKP------------------YEGDK 94 (313)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHHHHHhcCc------------------ccCCc
Confidence 479999999999998641 12346676666542 22222222 223333332111 12455
Q ss_pred EEEEEcCCCch--hhhhhhcCc---CCCCcEEEEecCchhhh-hccc-CcceEeccCCChHhHHHHHHHHhcccccCCCC
Q 005367 77 FALLLDDLWER--VDLKKIGVP---LPKNSAVVFTTRFVDVC-GRME-ARRTFKVECLSDEAAWELFREKVGEETIESHH 149 (700)
Q Consensus 77 ~LlVlDdv~~~--~~~~~l~~~---~~~gs~iiiTTr~~~~~-~~~~-~~~~~~l~~L~~~~a~~l~~~~~~~~~~~~~~ 149 (700)
-++|+|+++.. ..+..+..- .|+++.+|++|.+.+.. ..+. .-..+++.++++++....+.+...+.
T Consensus 95 kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~~------ 168 (313)
T PRK05564 95 KVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYNDI------ 168 (313)
T ss_pred eEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhcCC------
Confidence 67777776543 345544433 34588888888765432 2221 13578999999999988887654321
Q ss_pred ChHHHHHHHHHHhCCCchHHH
Q 005367 150 SIPELAQTVAKECGGLPLALI 170 (700)
Q Consensus 150 ~~~~~~~~i~~~~~g~Plai~ 170 (700)
.++.+..++..++|.|..+.
T Consensus 169 -~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 169 -KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred -CHHHHHHHHHHcCCCHHHHH
Confidence 15567788999999886543
No 85
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.64 E-value=0.0013 Score=68.82 Aligned_cols=92 Identities=14% Similarity=0.178 Sum_probs=60.3
Q ss_pred cCcEEEEEcCCCchh--hhhhhcCc---CCCCcEEEEecCchh-hhhccc-CcceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWERV--DLKKIGVP---LPKNSAVVFTTRFVD-VCGRME-ARRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~~--~~~~l~~~---~~~gs~iiiTTr~~~-~~~~~~-~~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
+++-++|+|+++... .++.+... .++..++|++|.+.+ +.+.+. .-..+++.+++.++..+.+.+.+...+..
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~ 197 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESID 197 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 355699999998663 34444333 233666776665433 322221 23578999999999999888877543322
Q ss_pred CCCChHHHHHHHHHHhCCCchH
Q 005367 147 SHHSIPELAQTVAKECGGLPLA 168 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~Pla 168 (700)
-.++.+..|++.++|.|..
T Consensus 198 ---i~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 198 ---TDEYALKLIAYHAHGSMRD 216 (363)
T ss_pred ---CCHHHHHHHHHHcCCCHHH
Confidence 2367888899999998753
No 86
>PLN03025 replication factor C subunit; Provisional
Probab=97.64 E-value=0.00076 Score=69.32 Aligned_cols=151 Identities=15% Similarity=0.143 Sum_probs=84.4
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCC-EEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFD-YVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~Ll 79 (700)
++|+|||++|+.+++... ...|. .++-++.++..+... .+...+.+..... ..-.++.-++
T Consensus 42 p~G~GKTtla~~la~~l~--~~~~~~~~~eln~sd~~~~~~-vr~~i~~~~~~~~---------------~~~~~~~kvi 103 (319)
T PLN03025 42 PPGTGKTTSILALAHELL--GPNYKEAVLELNASDDRGIDV-VRNKIKMFAQKKV---------------TLPPGRHKIV 103 (319)
T ss_pred CCCCCHHHHHHHHHHHHh--cccCccceeeecccccccHHH-HHHHHHHHHhccc---------------cCCCCCeEEE
Confidence 589999999999998861 12222 222233333222221 1222221110000 0001346699
Q ss_pred EEcCCCchh--h---hhhhcCcCCCCcEEEEecCch-hhhhccc-CcceEeccCCChHhHHHHHHHHhcccccCCCCChH
Q 005367 80 LLDDLWERV--D---LKKIGVPLPKNSAVVFTTRFV-DVCGRME-ARRTFKVECLSDEAAWELFREKVGEETIESHHSIP 152 (700)
Q Consensus 80 VlDdv~~~~--~---~~~l~~~~~~gs~iiiTTr~~-~~~~~~~-~~~~~~l~~L~~~~a~~l~~~~~~~~~~~~~~~~~ 152 (700)
|||+++... . +......++...++|+++... .+...+. .-..+++.++++++..+.+.+.+..++...+ +
T Consensus 104 iiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~---~ 180 (319)
T PLN03025 104 ILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYV---P 180 (319)
T ss_pred EEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCCC---H
Confidence 999998662 2 222233344567777766542 2212111 1247899999999999999888865443333 6
Q ss_pred HHHHHHHHHhCCCc-hHHHHH
Q 005367 153 ELAQTVAKECGGLP-LALITI 172 (700)
Q Consensus 153 ~~~~~i~~~~~g~P-lai~~~ 172 (700)
+....+++.++|-. .|++.+
T Consensus 181 ~~l~~i~~~~~gDlR~aln~L 201 (319)
T PLN03025 181 EGLEAIIFTADGDMRQALNNL 201 (319)
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 78889999998865 444333
No 87
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.63 E-value=4.4e-05 Score=51.98 Aligned_cols=30 Identities=43% Similarity=0.622 Sum_probs=10.7
Q ss_pred ceeccccCcccccchhhhcCCCCCEEeccc
Q 005367 401 QLLDISYTRVRELPEELKALVNLRCLNLDW 430 (700)
Q Consensus 401 ~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~ 430 (700)
++|++++|+++.+|..+++|++|+.|++++
T Consensus 4 ~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~ 33 (44)
T PF12799_consen 4 EELDLSNNQITDLPPELSNLPNLETLNLSN 33 (44)
T ss_dssp SEEEETSSS-SSHGGHGTTCTTSSEEEETS
T ss_pred eEEEccCCCCcccCchHhCCCCCCEEEecC
Confidence 333333333333333333333333333333
No 88
>PRK06620 hypothetical protein; Validated
Probab=97.62 E-value=0.00046 Score=66.01 Aligned_cols=90 Identities=11% Similarity=0.071 Sum_probs=58.4
Q ss_pred EEEEEcCCCchhh--hhhhcCcC-CCCcEEEEecCchhh-------hhcccCcceEeccCCChHhHHHHHHHHhcccccC
Q 005367 77 FALLLDDLWERVD--LKKIGVPL-PKNSAVVFTTRFVDV-------CGRMEARRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 77 ~LlVlDdv~~~~~--~~~l~~~~-~~gs~iiiTTr~~~~-------~~~~~~~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
-++++||+....+ +-.+...+ ..|..||+|++...- ..++.....++++++++++-..++.+.+...+..
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~ 166 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVT 166 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCC
Confidence 4788999974422 22222222 348889999874322 2333345589999999999888888887543323
Q ss_pred CCCChHHHHHHHHHHhCCCchHH
Q 005367 147 SHHSIPELAQTVAKECGGLPLAL 169 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~Plai 169 (700)
.+ ++..+-|++.+.|--..+
T Consensus 167 l~---~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 167 IS---RQIIDFLLVNLPREYSKI 186 (214)
T ss_pred CC---HHHHHHHHHHccCCHHHH
Confidence 33 788888888887765444
No 89
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.62 E-value=0.00046 Score=77.69 Aligned_cols=139 Identities=20% Similarity=0.228 Sum_probs=80.5
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh--ccCcEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTL--SKKKFA 78 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~~r~L 78 (700)
++|+||||+|+.+++.. ...|. .+++.. . ...+..+........+ .+++.+
T Consensus 60 PpGtGKTTLA~aIA~~~---~~~f~---~lna~~--~-------------------~i~dir~~i~~a~~~l~~~~~~~I 112 (725)
T PRK13341 60 PPGVGKTTLARIIANHT---RAHFS---SLNAVL--A-------------------GVKDLRAEVDRAKERLERHGKRTI 112 (725)
T ss_pred CCCCCHHHHHHHHHHHh---cCcce---eehhhh--h-------------------hhHHHHHHHHHHHHHhhhcCCceE
Confidence 58999999999999876 33331 111110 0 0011112222222222 246789
Q ss_pred EEEcCCCch--hhhhhhcCcCCCCcEEEEe--cCchh--hhhcc-cCcceEeccCCChHhHHHHHHHHhcccc----cCC
Q 005367 79 LLLDDLWER--VDLKKIGVPLPKNSAVVFT--TRFVD--VCGRM-EARRTFKVECLSDEAAWELFREKVGEET----IES 147 (700)
Q Consensus 79 lVlDdv~~~--~~~~~l~~~~~~gs~iiiT--Tr~~~--~~~~~-~~~~~~~l~~L~~~~a~~l~~~~~~~~~----~~~ 147 (700)
||||+++.. .+.+.+...+..|..++|+ |.+.. +.... .....+++++++.++...++.+.+.... ...
T Consensus 113 L~IDEIh~Ln~~qQdaLL~~lE~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~ 192 (725)
T PRK13341 113 LFIDEVHRFNKAQQDALLPWVENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRK 192 (725)
T ss_pred EEEeChhhCCHHHHHHHHHHhcCceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcc
Confidence 999999754 4556665555556666663 44321 11111 1235799999999999999988764210 011
Q ss_pred CCChHHHHHHHHHHhCCCc
Q 005367 148 HHSIPELAQTVAKECGGLP 166 (700)
Q Consensus 148 ~~~~~~~~~~i~~~~~g~P 166 (700)
-.-.++....|++.+.|..
T Consensus 193 v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 193 VDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred cCCCHHHHHHHHHhCCCCH
Confidence 2234678889999998864
No 90
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.59 E-value=0.0012 Score=74.45 Aligned_cols=97 Identities=14% Similarity=0.122 Sum_probs=64.0
Q ss_pred ccCcEEEEEcCCCch--hhhhhhcCcC---CCCcEEEEecCc-hhhhhccc-CcceEeccCCChHhHHHHHHHHhccccc
Q 005367 73 SKKKFALLLDDLWER--VDLKKIGVPL---PKNSAVVFTTRF-VDVCGRME-ARRTFKVECLSDEAAWELFREKVGEETI 145 (700)
Q Consensus 73 ~~~r~LlVlDdv~~~--~~~~~l~~~~---~~gs~iiiTTr~-~~~~~~~~-~~~~~~l~~L~~~~a~~l~~~~~~~~~~ 145 (700)
.+++-++|||++... ...+.++..+ +...++|++|.+ ..+...+. .-..|++.+++.++..+.+.+.+...++
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI 196 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL 196 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 357789999999766 3455544433 346666665544 33332221 1257999999999999999887754332
Q ss_pred CCCCChHHHHHHHHHHhCCCch-HHHHH
Q 005367 146 ESHHSIPELAQTVAKECGGLPL-ALITI 172 (700)
Q Consensus 146 ~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 172 (700)
...++.+..|++.++|.|. |+..+
T Consensus 197 ---~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 197 ---PFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2236788999999999875 44444
No 91
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.58 E-value=0.0017 Score=61.04 Aligned_cols=85 Identities=16% Similarity=0.173 Sum_probs=56.2
Q ss_pred cCcEEEEEcCCCchh--hhhhhc---CcCCCCcEEEEecCch-hhhhccc-CcceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWERV--DLKKIG---VPLPKNSAVVFTTRFV-DVCGRME-ARRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~~--~~~~l~---~~~~~gs~iiiTTr~~-~~~~~~~-~~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
+.+-++|+||++... ..+.+. ...++...+|++|++. .+...+. ....+++.+++.++..+.+.+. +
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~-g----- 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ-G----- 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc-C-----
Confidence 456789999997652 233332 2233456666666543 2222221 2358999999999999888776 1
Q ss_pred CCCChHHHHHHHHHHhCCCch
Q 005367 147 SHHSIPELAQTVAKECGGLPL 167 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~Pl 167 (700)
..++.+..+++.++|.|.
T Consensus 169 ---i~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 169 ---ISEEAAELLLALAGGSPG 186 (188)
T ss_pred ---CCHHHHHHHHHHcCCCcc
Confidence 126779999999999885
No 92
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.56 E-value=0.00016 Score=73.72 Aligned_cols=82 Identities=18% Similarity=0.251 Sum_probs=53.4
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc--CHHHHHHHHHHHcCCCCCCCCCccHHHH------HHHHHHH-
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL--QLEKIQETIRKKIGLCNDSWKNKSLEEK------AQDIFKT- 71 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~------~~~l~~~- 71 (700)
+||+||||||+++++... .++|+.++||.+.... ...++++.+...+-... .+...... .-...+.
T Consensus 177 ppGvGKTTLaK~Ian~I~--~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st---~d~~~~~~~~~a~~~ie~Ae~~ 251 (416)
T PRK09376 177 PPKAGKTVLLQNIANSIT--TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAST---FDEPAERHVQVAEMVIEKAKRL 251 (416)
T ss_pred CCCCChhHHHHHHHHHHH--hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEEC---CCCCHHHHHHHHHHHHHHHHHH
Confidence 589999999999999972 2389999999887776 77888888764322111 11111111 1111122
Q ss_pred -hccCcEEEEEcCCCch
Q 005367 72 -LSKKKFALLLDDLWER 87 (700)
Q Consensus 72 -l~~~r~LlVlDdv~~~ 87 (700)
-.+++++|++|++...
T Consensus 252 ~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 252 VEHGKDVVILLDSITRL 268 (416)
T ss_pred HHcCCCEEEEEEChHHH
Confidence 2578999999999544
No 93
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.55 E-value=0.0018 Score=70.71 Aligned_cols=96 Identities=14% Similarity=0.087 Sum_probs=62.7
Q ss_pred cCcEEEEEcCCCch--hhhhhhcCc---CCCCcEEEEecCchh-hhhcc-cCcceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWER--VDLKKIGVP---LPKNSAVVFTTRFVD-VCGRM-EARRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~--~~~~~l~~~---~~~gs~iiiTTr~~~-~~~~~-~~~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
+++-++|||+++.. .....+... .+.+.++|++|.+.. +...+ ..-..+++.+++.++..+.+.+.+..++..
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~ 196 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA 196 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC
Confidence 56679999999865 234444332 334667777766532 21111 223679999999999999998888654433
Q ss_pred CCCChHHHHHHHHHHhCCCc-hHHHHH
Q 005367 147 SHHSIPELAQTVAKECGGLP-LALITI 172 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~P-lai~~~ 172 (700)
..++....|++.++|.+ .|++.+
T Consensus 197 ---id~eAL~~IA~~S~GdLRdALnLL 220 (702)
T PRK14960 197 ---ADQDAIWQIAESAQGSLRDALSLT 220 (702)
T ss_pred ---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 33788889999999976 444443
No 94
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.55 E-value=0.0015 Score=70.54 Aligned_cols=91 Identities=15% Similarity=0.191 Sum_probs=61.0
Q ss_pred cCcEEEEEcCCCch--hhhhhhcCc---CCCCcEEEE-ecCchhhhhccc-CcceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWER--VDLKKIGVP---LPKNSAVVF-TTRFVDVCGRME-ARRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~--~~~~~l~~~---~~~gs~iii-TTr~~~~~~~~~-~~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
+++-++|+|+++.. .+++.+... .++...+|+ ||+...+...+. .-..+++.+++.++..+.+.+.+..++..
T Consensus 127 ~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ 206 (507)
T PRK06645 127 GKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLK 206 (507)
T ss_pred CCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 56779999999865 345555433 233555554 555444433332 23578999999999999999888654422
Q ss_pred CCCChHHHHHHHHHHhCCCch
Q 005367 147 SHHSIPELAQTVAKECGGLPL 167 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~Pl 167 (700)
. .++....|++.++|.+.
T Consensus 207 i---e~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 207 T---DIEALRIIAYKSEGSAR 224 (507)
T ss_pred C---CHHHHHHHHHHcCCCHH
Confidence 2 36778889999999763
No 95
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.52 E-value=0.0012 Score=70.60 Aligned_cols=170 Identities=19% Similarity=0.124 Sum_probs=99.9
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCC-CEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDF-DYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~Ll 79 (700)
.+|+|||.||.++++... ..+. ..++|+++ .++...+...+.. ...+ .+.+....+.-+|
T Consensus 138 ~~G~GKTHLl~ai~~~l~--~~~~~~~v~yi~~------~~f~~~~~~~~~~-------~~~~----~f~~~~~~~~dvL 198 (440)
T PRK14088 138 GVGLGKTHLLQSIGNYVV--QNEPDLRVMYITS------EKFLNDLVDSMKE-------GKLN----EFREKYRKKVDVL 198 (440)
T ss_pred CCCCcHHHHHHHHHHHHH--HhCCCCeEEEEEH------HHHHHHHHHHHhc-------ccHH----HHHHHHHhcCCEE
Confidence 379999999999999862 1122 35677754 3455666555531 1122 2333333345589
Q ss_pred EEcCCCchh-------hhhhhcC-cCCCCcEEEEecC-chhhh--------hcccCcceEeccCCChHhHHHHHHHHhcc
Q 005367 80 LLDDLWERV-------DLKKIGV-PLPKNSAVVFTTR-FVDVC--------GRMEARRTFKVECLSDEAAWELFREKVGE 142 (700)
Q Consensus 80 VlDdv~~~~-------~~~~l~~-~~~~gs~iiiTTr-~~~~~--------~~~~~~~~~~l~~L~~~~a~~l~~~~~~~ 142 (700)
|+||+.... ++-.+.. ....|..||+||. .+.-. .++.....+++++.+.+.-..++.+.+..
T Consensus 199 lIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~ 278 (440)
T PRK14088 199 LIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEI 278 (440)
T ss_pred EEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHh
Confidence 999997431 1111111 1233678889884 33222 12233457899999999999999988865
Q ss_pred cccCCCCChHHHHHHHHHHhCCCchHHHHHHHHh------ccC-CChHHHHHHHHHH
Q 005367 143 ETIESHHSIPELAQTVAKECGGLPLALITIGRAM------AYK-KTPEEWRYAIEVL 192 (700)
Q Consensus 143 ~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l------~~~-~~~~~~~~~l~~~ 192 (700)
.+...+ ++.+..|++.+.|.-..+..+-..| .++ -+.+..++++..+
T Consensus 279 ~~~~l~---~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 279 EHGELP---EEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred cCCCCC---HHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 443333 7889999999888654443332222 111 2555666666554
No 96
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.51 E-value=3.8e-05 Score=85.84 Aligned_cols=128 Identities=23% Similarity=0.281 Sum_probs=80.8
Q ss_pred ccceeeeecccccc--CCC-C-CCCCCceeEEEecCCCCc-ccccccccCCCcceEEEccCCcccccCCcccccccccce
Q 005367 328 EMGRRLSLMKNSIK--NLP-T-IPTCPHLLTLFLNRNPLT-TIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQL 402 (700)
Q Consensus 328 ~~l~~l~l~~~~~~--~l~-~-~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~ 402 (700)
.+|++|++.+...- ..+ . -.-+|.|++|.+.+-.+. +.....+.++|+|..||+|++ .++.+ ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHH
Confidence 47888888774321 111 1 245788888888887643 334455678888888888888 56666 47788888888
Q ss_pred eccccCcccccc--hhhhcCCCCCEEecccccCcccc--chhh---hcCCCccceeeccccC
Q 005367 403 LDISYTRVRELP--EELKALVNLRCLNLDWAGELVKV--PQQL---LSNFSRLRVLRMFATG 457 (700)
Q Consensus 403 L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~~--p~~~---~~~l~~L~~L~l~~~~ 457 (700)
|.+++-.+.... ..+..+++|+.||++..+..... .... -..+|+|+.|+.+++.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 888876665322 34667888888888876432221 1000 1246666666666443
No 97
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.50 E-value=0.0021 Score=69.81 Aligned_cols=99 Identities=13% Similarity=0.132 Sum_probs=62.4
Q ss_pred ccCcEEEEEcCCCch--hhhhhhcCc---CCCCcEEEE-ecCchhhhhccc-CcceEeccCCChHhHHHHHHHHhccccc
Q 005367 73 SKKKFALLLDDLWER--VDLKKIGVP---LPKNSAVVF-TTRFVDVCGRME-ARRTFKVECLSDEAAWELFREKVGEETI 145 (700)
Q Consensus 73 ~~~r~LlVlDdv~~~--~~~~~l~~~---~~~gs~iii-TTr~~~~~~~~~-~~~~~~l~~L~~~~a~~l~~~~~~~~~~ 145 (700)
.+++-++|+|+++.. ...+.+... .+....+|+ ||....+...+. .-..+++.+++.++..+.+.+.+...+.
T Consensus 117 ~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi 196 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI 196 (546)
T ss_pred cCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 356779999999755 334444333 333565554 544333332221 2367999999999998888876654332
Q ss_pred CCCCChHHHHHHHHHHhCCCc-hHHHHHHH
Q 005367 146 ESHHSIPELAQTVAKECGGLP-LALITIGR 174 (700)
Q Consensus 146 ~~~~~~~~~~~~i~~~~~g~P-lai~~~~~ 174 (700)
...++....|++.++|.+ .|++.+-.
T Consensus 197 ---~~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 197 ---NSDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 233777889999999965 56555543
No 98
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.48 E-value=2.2e-05 Score=87.73 Aligned_cols=107 Identities=18% Similarity=0.184 Sum_probs=62.3
Q ss_pred cccccEEEEeccccccceeecccccccccCCccccCCccEEeeecCcCcccccccccCCCCceEEeeecccccccccccc
Q 005367 526 LEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLTFLVFAPNLKSISVCLCDDMEEIISAGE 605 (700)
Q Consensus 526 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~ 605 (700)
+|+|++|.+.+-....+ .....+ .+||||.+||++++ +++.+..++.+++|+.|.+.+..-..
T Consensus 147 LPsL~sL~i~~~~~~~~-dF~~lc--------~sFpNL~sLDIS~T-nI~nl~GIS~LknLq~L~mrnLe~e~------- 209 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDND-DFSQLC--------ASFPNLRSLDISGT-NISNLSGISRLKNLQVLSMRNLEFES------- 209 (699)
T ss_pred CcccceEEecCceecch-hHHHHh--------hccCccceeecCCC-CccCcHHHhccccHHHHhccCCCCCc-------
Confidence 67888888866432221 111222 36888888888887 66777778888888888777653221
Q ss_pred CCCCCCccCCCCCCCCccceeeccCccccccc--c----cCCCCCCCccEEEEcC
Q 005367 606 FDDIPEMTGIISSPFAKLQRLRLEGLGRLKSI--Y----WKPLPLPRLKELEVRG 654 (700)
Q Consensus 606 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l--~----~~~~~~~~L~~L~i~~ 654 (700)
+..+ ..+-++.+|+.|+++.-.....- . .-...+|+|+.||.++
T Consensus 210 ~~~l-----~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 210 YQDL-----IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred hhhH-----HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 1111 13446778888888742221111 1 1122478888888774
No 99
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.48 E-value=0.0023 Score=66.66 Aligned_cols=93 Identities=14% Similarity=0.121 Sum_probs=60.1
Q ss_pred CcEEEEEcCCCchh--h---hhhhcCcCCCCcEEEEecCchh-hhhccc-CcceEeccCCChHhHHHHHHHHhcccccCC
Q 005367 75 KKFALLLDDLWERV--D---LKKIGVPLPKNSAVVFTTRFVD-VCGRME-ARRTFKVECLSDEAAWELFREKVGEETIES 147 (700)
Q Consensus 75 ~r~LlVlDdv~~~~--~---~~~l~~~~~~gs~iiiTTr~~~-~~~~~~-~~~~~~l~~L~~~~a~~l~~~~~~~~~~~~ 147 (700)
.+-+||+||++... . +..+....+...++|+||.+.. +...+. ....+++.+++.++..+.+.+.+...+..
T Consensus 125 ~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~- 203 (337)
T PRK12402 125 DYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD- 203 (337)
T ss_pred CCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-
Confidence 44589999997552 1 2223233445677887775432 222222 23578999999999999998877554433
Q ss_pred CCChHHHHHHHHHHhCCCchHHH
Q 005367 148 HHSIPELAQTVAKECGGLPLALI 170 (700)
Q Consensus 148 ~~~~~~~~~~i~~~~~g~Plai~ 170 (700)
-.++....+++.++|.+-.+.
T Consensus 204 --~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 204 --YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred --CCHHHHHHHHHHcCCCHHHHH
Confidence 237888899999988764443
No 100
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.48 E-value=0.0015 Score=69.65 Aligned_cols=150 Identities=21% Similarity=0.195 Sum_probs=89.2
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
.+|+|||.||+++++.... ...-..++++++ .++...+...+.. ...+ .+.+.+++ .-+||
T Consensus 144 ~~G~GKThL~~ai~~~l~~-~~~~~~v~yi~~------~~~~~~~~~~~~~-------~~~~----~~~~~~~~-~dlLi 204 (405)
T TIGR00362 144 GVGLGKTHLLHAIGNEILE-NNPNAKVVYVSS------EKFTNDFVNALRN-------NKME----EFKEKYRS-VDLLL 204 (405)
T ss_pred CCCCcHHHHHHHHHHHHHH-hCCCCcEEEEEH------HHHHHHHHHHHHc-------CCHH----HHHHHHHh-CCEEE
Confidence 4799999999999998721 111235566653 3334445554421 1122 22333332 34889
Q ss_pred EcCCCchhh----hhhhcCc----CCCCcEEEEecCc-hhh--------hhcccCcceEeccCCChHhHHHHHHHHhccc
Q 005367 81 LDDLWERVD----LKKIGVP----LPKNSAVVFTTRF-VDV--------CGRMEARRTFKVECLSDEAAWELFREKVGEE 143 (700)
Q Consensus 81 lDdv~~~~~----~~~l~~~----~~~gs~iiiTTr~-~~~--------~~~~~~~~~~~l~~L~~~~a~~l~~~~~~~~ 143 (700)
|||+..... .+.+... ...|..+|+||.. +.- ..++.....+++++.+.++-.+++.+.+...
T Consensus 205 iDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~ 284 (405)
T TIGR00362 205 IDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEE 284 (405)
T ss_pred EehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHc
Confidence 999974311 1122111 2236778888763 222 1222234578999999999999999998654
Q ss_pred ccCCCCChHHHHHHHHHHhCCCchHHHHH
Q 005367 144 TIESHHSIPELAQTVAKECGGLPLALITI 172 (700)
Q Consensus 144 ~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 172 (700)
+... .++....|++.+.|..-.+..+
T Consensus 285 ~~~l---~~e~l~~ia~~~~~~~r~l~~~ 310 (405)
T TIGR00362 285 GLEL---PDEVLEFIAKNIRSNVRELEGA 310 (405)
T ss_pred CCCC---CHHHHHHHHHhcCCCHHHHHHH
Confidence 4233 3788899999998876654433
No 101
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.48 E-value=0.0022 Score=69.89 Aligned_cols=98 Identities=13% Similarity=0.122 Sum_probs=63.1
Q ss_pred cCcEEEEEcCCCch--hhhhhhcCcC---CCCcEEEEecC-chhhhhcccC-cceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWER--VDLKKIGVPL---PKNSAVVFTTR-FVDVCGRMEA-RRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~--~~~~~l~~~~---~~gs~iiiTTr-~~~~~~~~~~-~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
++.-++|||+++.. .....++.-+ +.+.++|++|. ...+...+.+ -..+.+..++.++..+.+.+.+..++..
T Consensus 123 gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~ 202 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA 202 (700)
T ss_pred CCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC
Confidence 56679999999866 3445554433 33566555554 4444322221 2578999999999999998877554322
Q ss_pred CCCChHHHHHHHHHHhCCCch-HHHHHHH
Q 005367 147 SHHSIPELAQTVAKECGGLPL-ALITIGR 174 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~Pl-ai~~~~~ 174 (700)
...+..+.|++.++|.|. |+..+-.
T Consensus 203 ---~d~eAL~~IA~~A~Gs~RdALsLLdQ 228 (700)
T PRK12323 203 ---HEVNALRLLAQAAQGSMRDALSLTDQ 228 (700)
T ss_pred ---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 225677889999999885 4444333
No 102
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.47 E-value=0.0014 Score=70.77 Aligned_cols=168 Identities=21% Similarity=0.159 Sum_probs=98.4
Q ss_pred CCCCcHHHHHHHHHhhcccCCCC--CCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTD--FDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFA 78 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~L 78 (700)
.+|+|||.||+++++.. ... -..++++++. ++...+...+.. ... ..+.+.++ +--+
T Consensus 156 ~~G~GKThL~~ai~~~~---~~~~~~~~v~yi~~~------~~~~~~~~~~~~-------~~~----~~~~~~~~-~~dl 214 (450)
T PRK00149 156 GVGLGKTHLLHAIGNYI---LEKNPNAKVVYVTSE------KFTNDFVNALRN-------NTM----EEFKEKYR-SVDV 214 (450)
T ss_pred CCCCCHHHHHHHHHHHH---HHhCCCCeEEEEEHH------HHHHHHHHHHHc-------CcH----HHHHHHHh-cCCE
Confidence 47999999999999997 332 2345666542 333444444421 112 22333333 2348
Q ss_pred EEEcCCCchh----hhhhhcC----cCCCCcEEEEecCchh---------hhhcccCcceEeccCCChHhHHHHHHHHhc
Q 005367 79 LLLDDLWERV----DLKKIGV----PLPKNSAVVFTTRFVD---------VCGRMEARRTFKVECLSDEAAWELFREKVG 141 (700)
Q Consensus 79 lVlDdv~~~~----~~~~l~~----~~~~gs~iiiTTr~~~---------~~~~~~~~~~~~l~~L~~~~a~~l~~~~~~ 141 (700)
|||||+.... ..+.+.. ....|..||+||.... +..++.....+++++.+.++-.+++.+.+.
T Consensus 215 LiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~ 294 (450)
T PRK00149 215 LLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAE 294 (450)
T ss_pred EEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHH
Confidence 9999996431 1122222 1233667888886431 122333446799999999999999999986
Q ss_pred ccccCCCCChHHHHHHHHHHhCCCchHHHHHHHHh------ccC-CChHHHHHHHHHH
Q 005367 142 EETIESHHSIPELAQTVAKECGGLPLALITIGRAM------AYK-KTPEEWRYAIEVL 192 (700)
Q Consensus 142 ~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l------~~~-~~~~~~~~~l~~~ 192 (700)
..+... .++....|++.++|..-.+..+-..+ .++ -+.+..++++..+
T Consensus 295 ~~~~~l---~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 295 EEGIDL---PDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HcCCCC---CHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 533233 37889999999998766443332222 111 2555556655544
No 103
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.46 E-value=0.0022 Score=69.55 Aligned_cols=93 Identities=18% Similarity=0.188 Sum_probs=61.4
Q ss_pred cCcEEEEEcCCCch--hhhhhhcCcC---CCCcEEEEecC-chhhhhccc-CcceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWER--VDLKKIGVPL---PKNSAVVFTTR-FVDVCGRME-ARRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~--~~~~~l~~~~---~~gs~iiiTTr-~~~~~~~~~-~~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
+++-++|||+++.. ..++.+...+ ++...+|++|. ...+...+. .-..+++.++++++..+.+.+.+...+..
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~ 194 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE 194 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 46679999999755 3355554433 22445555554 333322222 23579999999999999999888654423
Q ss_pred CCCChHHHHHHHHHHhCCCchHH
Q 005367 147 SHHSIPELAQTVAKECGGLPLAL 169 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~Plai 169 (700)
. .++.+..|++.++|.+--+
T Consensus 195 i---~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 195 A---EPEALQLVARLADGAMRDA 214 (504)
T ss_pred C---CHHHHHHHHHHcCCCHHHH
Confidence 2 3788899999999988544
No 104
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.44 E-value=3e-06 Score=90.10 Aligned_cols=114 Identities=27% Similarity=0.279 Sum_probs=55.3
Q ss_pred CCCCCCCccccccccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCccc
Q 005367 315 SGLTEAPADVRGWEMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGI 394 (700)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~ 394 (700)
+.+..+...+.-++.++.|+++.|.++++..+..|++|+.|||++|.+...+--....|+ |+.|.|++| .++.+- .+
T Consensus 174 N~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN-~l~tL~-gi 250 (1096)
T KOG1859|consen 174 NRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN-ALTTLR-GI 250 (1096)
T ss_pred hhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeeccc-HHHhhh-hH
Confidence 334444444444555555555555555555555555555555555554444332223333 555555555 344332 44
Q ss_pred ccccccceeccccCcccccc--hhhhcCCCCCEEecccc
Q 005367 395 SKLVSLQLLDISYTRVRELP--EELKALVNLRCLNLDWA 431 (700)
Q Consensus 395 ~~l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~ 431 (700)
.++.+|+.||+++|-+.... ..++.+..|+.|.+.||
T Consensus 251 e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 45555555555555443111 12344445555555554
No 105
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.43 E-value=0.00018 Score=48.94 Aligned_cols=40 Identities=28% Similarity=0.473 Sum_probs=31.7
Q ss_pred CcceEEEccCCcccccCCcccccccccceeccccCcccccc
Q 005367 374 PCLTVLKMSGNETLRQLPMGISKLVSLQLLDISYTRVRELP 414 (700)
Q Consensus 374 ~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp 414 (700)
++|++|++++| .++++|..+++|++|++|++++|+++.++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 46888999998 67788877888999999999998888664
No 106
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0056 Score=63.45 Aligned_cols=169 Identities=15% Similarity=0.201 Sum_probs=106.7
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhc--cCcEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLS--KKKFA 78 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~r~L 78 (700)
.+|+|||+.++.+++.........+ +++|++....+..+++..|+++++.... ......+..+.+.+.+. ++.++
T Consensus 50 ~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~~~~~~p~--~g~~~~~~~~~l~~~~~~~~~~~I 126 (366)
T COG1474 50 PTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILNKLGKVPL--TGDSSLEILKRLYDNLSKKGKTVI 126 (366)
T ss_pred CCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHHHcCCCCC--CCCchHHHHHHHHHHHHhcCCeEE
Confidence 3799999999999999833323333 8999999999999999999999963221 34455566666666664 47899
Q ss_pred EEEcCCCchhh-----hhhhcCcCCC-CcE--EEEecCchhhhhccc-------CcceEeccCCChHhHHHHHHHHhcc-
Q 005367 79 LLLDDLWERVD-----LKKIGVPLPK-NSA--VVFTTRFVDVCGRME-------ARRTFKVECLSDEAAWELFREKVGE- 142 (700)
Q Consensus 79 lVlDdv~~~~~-----~~~l~~~~~~-gs~--iiiTTr~~~~~~~~~-------~~~~~~l~~L~~~~a~~l~~~~~~~- 142 (700)
+|||+++.... +-.+...-.. .++ ||..+.+-.....+. ....+..++.+.+|-...+..++..
T Consensus 127 vvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~ 206 (366)
T COG1474 127 VILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEG 206 (366)
T ss_pred EEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhh
Confidence 99999976622 2233222222 333 334444433322221 1234889999999999999999832
Q ss_pred -cccCCCCChHHHHHHHHHHhCC-CchHHHHH
Q 005367 143 -ETIESHHSIPELAQTVAKECGG-LPLALITI 172 (700)
Q Consensus 143 -~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~ 172 (700)
......+..-+.+..++..-+| --.||...
T Consensus 207 ~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 207 FSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred ccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 2223344444555555555554 34444443
No 107
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.36 E-value=0.00094 Score=70.04 Aligned_cols=138 Identities=17% Similarity=0.194 Sum_probs=76.3
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTL-SKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~Ll 79 (700)
++|+|||++|+++++.. ...| +.+.. . .+..... .........+.+.. .....+|
T Consensus 164 ppGtGKT~lakaia~~l---~~~~-----~~v~~----~----~l~~~~~--------g~~~~~i~~~f~~a~~~~p~il 219 (364)
T TIGR01242 164 PPGTGKTLLAKAVAHET---NATF-----IRVVG----S----ELVRKYI--------GEGARLVREIFELAKEKAPSII 219 (364)
T ss_pred CCCCCHHHHHHHHHHhC---CCCE-----Eecch----H----HHHHHhh--------hHHHHHHHHHHHHHHhcCCcEE
Confidence 58999999999999987 3332 22111 1 1111110 01111222222222 2456899
Q ss_pred EEcCCCchh----------------hhhhhcC---cC--CCCcEEEEecCchhhhhc-c----cCcceEeccCCChHhHH
Q 005367 80 LLDDLWERV----------------DLKKIGV---PL--PKNSAVVFTTRFVDVCGR-M----EARRTFKVECLSDEAAW 133 (700)
Q Consensus 80 VlDdv~~~~----------------~~~~l~~---~~--~~gs~iiiTTr~~~~~~~-~----~~~~~~~l~~L~~~~a~ 133 (700)
+||+++... .+..+.. .+ ..+..||.||+..+.... + .-...++++..+.++..
T Consensus 220 ~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~ 299 (364)
T TIGR01242 220 FIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRL 299 (364)
T ss_pred EhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHH
Confidence 999986531 1222211 12 226678888875443221 1 22467899999999999
Q ss_pred HHHHHHhcccccCCCCChHHHHHHHHHHhCCCc
Q 005367 134 ELFREKVGEETIESHHSIPELAQTVAKECGGLP 166 (700)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 166 (700)
++|..++........ .....+++.+.|..
T Consensus 300 ~Il~~~~~~~~l~~~----~~~~~la~~t~g~s 328 (364)
T TIGR01242 300 EILKIHTRKMKLAED----VDLEAIAKMTEGAS 328 (364)
T ss_pred HHHHHHHhcCCCCcc----CCHHHHHHHcCCCC
Confidence 999988754332211 12466777776654
No 108
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.35 E-value=1.9e-05 Score=66.63 Aligned_cols=84 Identities=18% Similarity=0.330 Sum_probs=48.8
Q ss_pred CCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccccccccceeccccCcccccchhhhcCCCCCEE
Q 005367 347 PTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQLLDISYTRVRELPEELKALVNLRCL 426 (700)
Q Consensus 347 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L 426 (700)
..-..|...++++|.+.+.++.+..+++.++.|++++| .+.++|..+..++.|+.|+++.|.+...|..+..+.+|-.|
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHh
Confidence 33445555666666666556555555556666666666 55556655666666666666666666555555555555555
Q ss_pred ecccc
Q 005367 427 NLDWA 431 (700)
Q Consensus 427 ~l~~~ 431 (700)
+.-++
T Consensus 129 ds~~n 133 (177)
T KOG4579|consen 129 DSPEN 133 (177)
T ss_pred cCCCC
Confidence 55444
No 109
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.34 E-value=0.0042 Score=67.48 Aligned_cols=150 Identities=15% Similarity=0.113 Sum_probs=85.6
Q ss_pred CCCCcHHHHHHHHHhhcccC------------------CCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHH
Q 005367 1 MGGVGKTTLLTQINNKFVDN------------------PTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLE 62 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~------------------~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 62 (700)
+.|+||||+|+.++...-.. .+.+..++.++..+.....++ +.+.+.+....
T Consensus 46 p~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~i-R~l~~~~~~~p--------- 115 (509)
T PRK14958 46 TRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDT-RELLDNIPYAP--------- 115 (509)
T ss_pred CCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHHH-HHHHHHHhhcc---------
Confidence 47999999999998865110 112333445544333333332 23333332211
Q ss_pred HHHHHHHHHhccCcEEEEEcCCCch--hhhhhhc---CcCCCCcEEEEecCch-hhhhccc-CcceEeccCCChHhHHHH
Q 005367 63 EKAQDIFKTLSKKKFALLLDDLWER--VDLKKIG---VPLPKNSAVVFTTRFV-DVCGRME-ARRTFKVECLSDEAAWEL 135 (700)
Q Consensus 63 ~~~~~l~~~l~~~r~LlVlDdv~~~--~~~~~l~---~~~~~gs~iiiTTr~~-~~~~~~~-~~~~~~l~~L~~~~a~~l 135 (700)
..++.-++|||+++.. +....+. .-.|+..++|++|.+. .+...+. .-..+++.+++.++..+.
T Consensus 116 ---------~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~ 186 (509)
T PRK14958 116 ---------TKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAH 186 (509)
T ss_pred ---------ccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHH
Confidence 1245668999999865 2333332 2334467776655443 2221111 125688999999998888
Q ss_pred HHHHhcccccCCCCChHHHHHHHHHHhCCCch-HHHHH
Q 005367 136 FREKVGEETIESHHSIPELAQTVAKECGGLPL-ALITI 172 (700)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 172 (700)
+.+.+...+... .++....|++.++|.+. |++.+
T Consensus 187 l~~il~~egi~~---~~~al~~ia~~s~GslR~al~lL 221 (509)
T PRK14958 187 CQHLLKEENVEF---ENAALDLLARAANGSVRDALSLL 221 (509)
T ss_pred HHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHHHHH
Confidence 777765444222 36778889999999774 44433
No 110
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0044 Score=61.57 Aligned_cols=165 Identities=16% Similarity=0.188 Sum_probs=97.8
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhc-cCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLS-KKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~r~Ll 79 (700)
++|+|||-||++++++. . .-|+.+..+ ++.+++-..+ ..++..+++.-+ ....+|
T Consensus 193 PPGTGKTLLAkAVA~~T---~-----AtFIrvvgS--------ElVqKYiGEG--------aRlVRelF~lArekaPsII 248 (406)
T COG1222 193 PPGTGKTLLAKAVANQT---D-----ATFIRVVGS--------ELVQKYIGEG--------ARLVRELFELAREKAPSII 248 (406)
T ss_pred CCCCcHHHHHHHHHhcc---C-----ceEEEeccH--------HHHHHHhccc--------hHHHHHHHHHHhhcCCeEE
Confidence 68999999999999997 2 234443332 4555553221 234444444443 467999
Q ss_pred EEcCCCch-------------hh---hhh---hcCcCCC--CcEEEEecCchhhhhcc-----cCcceEeccCCChHhHH
Q 005367 80 LLDDLWER-------------VD---LKK---IGVPLPK--NSAVVFTTRFVDVCGRM-----EARRTFKVECLSDEAAW 133 (700)
Q Consensus 80 VlDdv~~~-------------~~---~~~---l~~~~~~--gs~iiiTTr~~~~~~~~-----~~~~~~~l~~L~~~~a~ 133 (700)
++|.++.. +. +-+ -...|.+ +-|||..|...++++.. +-++.++++.-+.+.-.
T Consensus 249 FiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~ 328 (406)
T COG1222 249 FIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRA 328 (406)
T ss_pred EEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHH
Confidence 99998633 10 111 1244555 78899999888876443 23678999955555556
Q ss_pred HHHHHHhcccccCCCCChHHHHHHHHHHhCCCc----hHHHHHHHHhcc--CC---ChHHHHHHHHHHH
Q 005367 134 ELFREKVGEETIESHHSIPELAQTVAKECGGLP----LALITIGRAMAY--KK---TPEEWRYAIEVLR 193 (700)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P----lai~~~~~~l~~--~~---~~~~~~~~l~~~~ 193 (700)
+.|.-++..-.....-++ +.+++.+.|.- .|+-+=|++++- .+ +.+++....++..
T Consensus 329 ~Il~IHtrkM~l~~dvd~----e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 329 EILKIHTRKMNLADDVDL----ELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVV 393 (406)
T ss_pred HHHHHHhhhccCccCcCH----HHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHH
Confidence 677777755553444343 45666666664 555555666533 33 4555555544443
No 111
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.33 E-value=0.0044 Score=66.58 Aligned_cols=100 Identities=21% Similarity=0.192 Sum_probs=62.0
Q ss_pred cCcEEEEEcCCCch--hhhhhhcCcC---CCCcEEEEecCc-hhhhhccc-CcceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWER--VDLKKIGVPL---PKNSAVVFTTRF-VDVCGRME-ARRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~--~~~~~l~~~~---~~gs~iiiTTr~-~~~~~~~~-~~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
+++-++|+|+++.. .+.+.+...+ ++...+|++|.+ ..+...+. .-..+++.+++.++....+.+.+...+..
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~ 195 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE 195 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC
Confidence 46679999999755 3344443333 223444444433 33322222 23578999999999999988887544322
Q ss_pred CCCChHHHHHHHHHHhCC-CchHHHHHHHHh
Q 005367 147 SHHSIPELAQTVAKECGG-LPLALITIGRAM 176 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g-~Plai~~~~~~l 176 (700)
-.++....|++.++| .+.|++.+....
T Consensus 196 ---i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 196 ---IDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred ---CCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 236788889987765 567777765533
No 112
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.33 E-value=0.0026 Score=67.91 Aligned_cols=141 Identities=14% Similarity=0.127 Sum_probs=84.5
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
+.|+|||+||+++++.. ......+++++. ..+...+...+.. .. ...++...+ ..-+|+
T Consensus 149 ~~G~GKTHLl~Ai~~~l---~~~~~~v~yi~~------~~f~~~~~~~l~~-------~~----~~~f~~~~~-~~dvLi 207 (445)
T PRK12422 149 PEGSGKTHLMQAAVHAL---RESGGKILYVRS------ELFTEHLVSAIRS-------GE----MQRFRQFYR-NVDALF 207 (445)
T ss_pred CCCCCHHHHHHHHHHHH---HHcCCCEEEeeH------HHHHHHHHHHHhc-------ch----HHHHHHHcc-cCCEEE
Confidence 47999999999999987 222234556652 3344455555421 11 122333333 344888
Q ss_pred EcCCCchhh----hhhhcCc----CCCCcEEEEecCch-h--------hhhcccCcceEeccCCChHhHHHHHHHHhccc
Q 005367 81 LDDLWERVD----LKKIGVP----LPKNSAVVFTTRFV-D--------VCGRMEARRTFKVECLSDEAAWELFREKVGEE 143 (700)
Q Consensus 81 lDdv~~~~~----~~~l~~~----~~~gs~iiiTTr~~-~--------~~~~~~~~~~~~l~~L~~~~a~~l~~~~~~~~ 143 (700)
+||+..... .+.+... ...|..||+||... . +..++.....+++++++.++-..++.+.+...
T Consensus 208 IDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~ 287 (445)
T PRK12422 208 IEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEAL 287 (445)
T ss_pred EcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHc
Confidence 899854411 1222222 22377888888542 1 12223345688999999999999999888654
Q ss_pred ccCCCCChHHHHHHHHHHhCCC
Q 005367 144 TIESHHSIPELAQTVAKECGGL 165 (700)
Q Consensus 144 ~~~~~~~~~~~~~~i~~~~~g~ 165 (700)
+...+ ++....|++.+.+.
T Consensus 288 ~~~l~---~evl~~la~~~~~d 306 (445)
T PRK12422 288 SIRIE---ETALDFLIEALSSN 306 (445)
T ss_pred CCCCC---HHHHHHHHHhcCCC
Confidence 42333 67777788877754
No 113
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.30 E-value=0.00063 Score=70.14 Aligned_cols=70 Identities=20% Similarity=0.361 Sum_probs=47.3
Q ss_pred ccchhhhccccCCCceeeecCcCccccccEEEEeccccccceeecccccccccCCccccCCccEEeeecCcCcccccccc
Q 005367 502 SCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLTFLV 581 (700)
Q Consensus 502 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~ 581 (700)
.+++.|++++| .+...+ .++ ++|++|.+++|..+..++- . .+++|++|++.+|..+..+|
T Consensus 52 ~~l~~L~Is~c-~L~sLP--~LP--~sLtsL~Lsnc~nLtsLP~-~-----------LP~nLe~L~Ls~Cs~L~sLP--- 111 (426)
T PRK15386 52 RASGRLYIKDC-DIESLP--VLP--NELTEITIENCNNLTTLPG-S-----------IPEGLEKLTVCHCPEISGLP--- 111 (426)
T ss_pred cCCCEEEeCCC-CCcccC--CCC--CCCcEEEccCCCCcccCCc-h-----------hhhhhhheEccCcccccccc---
Confidence 57888888888 344433 222 4799999988887754321 1 24689999999987766554
Q ss_pred cCCCCceEEeee
Q 005367 582 FAPNLKSISVCL 593 (700)
Q Consensus 582 ~l~~L~~L~l~~ 593 (700)
++|+.|++.+
T Consensus 112 --~sLe~L~L~~ 121 (426)
T PRK15386 112 --ESVRSLEIKG 121 (426)
T ss_pred --cccceEEeCC
Confidence 5677777753
No 114
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.30 E-value=0.003 Score=70.39 Aligned_cols=141 Identities=13% Similarity=0.093 Sum_probs=85.6
Q ss_pred CCCCcHHHHHHHHHhhcccC--CCCC--CEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhc--c
Q 005367 1 MGGVGKTTLLTQINNKFVDN--PTDF--DYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLS--K 74 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~--~~~f--~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~ 74 (700)
++|+|||+.++.+++..... .... -.+++|++..-.+.......|++++....+. ......+....+...+. .
T Consensus 789 ~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~-~GlsS~evLerLF~~L~k~~ 867 (1164)
T PTZ00112 789 MPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPP-NALNSFKILDRLFNQNKKDN 867 (1164)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCC-ccccHHHHHHHHHhhhhccc
Confidence 58999999999998775221 1122 2467888888888999999999988433221 22233455566665552 2
Q ss_pred -CcEEEEEcCCCchh-----hhhhhcC-cCCCCcEEEE--ecCchhhh----hcccC---cceEeccCCChHhHHHHHHH
Q 005367 75 -KKFALLLDDLWERV-----DLKKIGV-PLPKNSAVVF--TTRFVDVC----GRMEA---RRTFKVECLSDEAAWELFRE 138 (700)
Q Consensus 75 -~r~LlVlDdv~~~~-----~~~~l~~-~~~~gs~iii--TTr~~~~~----~~~~~---~~~~~l~~L~~~~a~~l~~~ 138 (700)
...+||||+++... .+-.+.. +...+++|+| .|.+.+.. ..+.. ...+..++++.+|-.+++..
T Consensus 868 r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~ 947 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKE 947 (1164)
T ss_pred ccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHH
Confidence 23699999997542 1222222 1223555444 34332221 11111 23467799999999999999
Q ss_pred Hhcc
Q 005367 139 KVGE 142 (700)
Q Consensus 139 ~~~~ 142 (700)
++..
T Consensus 948 RAe~ 951 (1164)
T PTZ00112 948 RLEN 951 (1164)
T ss_pred HHHh
Confidence 9854
No 115
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.29 E-value=0.0037 Score=68.11 Aligned_cols=149 Identities=19% Similarity=0.145 Sum_probs=90.4
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEEE
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALLL 81 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVl 81 (700)
.|+|||.|+.++++.... ......++++++ .++...+...+. ....+ .+++.+.+ -=+|||
T Consensus 323 sGsGKTHLL~AIa~~a~~-~~~g~~V~Yita------eef~~el~~al~-------~~~~~----~f~~~y~~-~DLLlI 383 (617)
T PRK14086 323 SGLGKTHLLHAIGHYARR-LYPGTRVRYVSS------EEFTNEFINSIR-------DGKGD----SFRRRYRE-MDILLV 383 (617)
T ss_pred CCCCHHHHHHHHHHHHHH-hCCCCeEEEeeH------HHHHHHHHHHHH-------hccHH----HHHHHhhc-CCEEEE
Confidence 699999999999998611 112235566653 334444444432 11122 23333332 247889
Q ss_pred cCCCchh---hh-hhhcC---c-CCCCcEEEEecCch---------hhhhcccCcceEeccCCChHhHHHHHHHHhcccc
Q 005367 82 DDLWERV---DL-KKIGV---P-LPKNSAVVFTTRFV---------DVCGRMEARRTFKVECLSDEAAWELFREKVGEET 144 (700)
Q Consensus 82 Ddv~~~~---~~-~~l~~---~-~~~gs~iiiTTr~~---------~~~~~~~~~~~~~l~~L~~~~a~~l~~~~~~~~~ 144 (700)
||+.-.. .+ +.+.. . ...|..|||||+.. .+..++.....++|+..+.+.-..++.+++...+
T Consensus 384 DDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~ 463 (617)
T PRK14086 384 DDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQ 463 (617)
T ss_pred ehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcC
Confidence 9996441 11 12222 2 23377899998752 2233344567899999999999999999986655
Q ss_pred cCCCCChHHHHHHHHHHhCCCchHHHHH
Q 005367 145 IESHHSIPELAQTVAKECGGLPLALITI 172 (700)
Q Consensus 145 ~~~~~~~~~~~~~i~~~~~g~Plai~~~ 172 (700)
...+ ++++.-|++.+.+..-.|..+
T Consensus 464 l~l~---~eVi~yLa~r~~rnvR~Lega 488 (617)
T PRK14086 464 LNAP---PEVLEFIASRISRNIRELEGA 488 (617)
T ss_pred CCCC---HHHHHHHHHhccCCHHHHHHH
Confidence 4444 788888888888765444443
No 116
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.28 E-value=0.00014 Score=68.87 Aligned_cols=140 Identities=22% Similarity=0.154 Sum_probs=82.7
Q ss_pred CCCCceeEEEecCCCCccccccc----ccCCCcceEEEccCCcc---cccCC-------cccccccccceeccccCccc-
Q 005367 347 PTCPHLLTLFLNRNPLTTIAGGF----FQSMPCLTVLKMSGNET---LRQLP-------MGISKLVSLQLLDISYTRVR- 411 (700)
Q Consensus 347 ~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~L~~~~~---~~~lp-------~~~~~l~~L~~L~l~~~~l~- 411 (700)
..+..+..++|+||.+....... +.+-++|+..++++..- ...+| ..+.+|++|+..+++.|.+.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 34566777778887764433222 34556777777776511 11122 23456788888888888766
Q ss_pred ccch----hhhcCCCCCEEecccccCccccchhh-------------hcCCCccceeeccccCcccccCcccchHHHHhc
Q 005367 412 ELPE----ELKALVNLRCLNLDWAGELVKVPQQL-------------LSNFSRLRVLRMFATGLISFYSWHENVAEELLG 474 (700)
Q Consensus 412 ~lp~----~~~~l~~L~~L~l~~~~~~~~~p~~~-------------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 474 (700)
+.|+ .+.+-++|.+|.+++|. ++.+...- ...-|.|+......|++... ........+..
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRleng--s~~~~a~~l~s 183 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENG--SKELSAALLES 183 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccC--cHHHHHHHHHh
Confidence 4443 35677888888888774 23222111 33557777777777766432 11222334455
Q ss_pred CCCcceEEEEEecch
Q 005367 475 LKYLEVLEITFRRFE 489 (700)
Q Consensus 475 l~~L~~L~l~~~~~~ 489 (700)
..+|+.+.+..|.+.
T Consensus 184 h~~lk~vki~qNgIr 198 (388)
T COG5238 184 HENLKEVKIQQNGIR 198 (388)
T ss_pred hcCceeEEeeecCcC
Confidence 577888888877764
No 117
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.28 E-value=0.0011 Score=59.44 Aligned_cols=94 Identities=20% Similarity=0.053 Sum_probs=51.3
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
.+|+|||++|+++++.. ......+++++.............+... ............+..++|
T Consensus 27 ~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~li 89 (151)
T cd00009 27 PPGTGKTTLARAIANEL---FRPGAPFLYLNASDLLEGLVVAELFGHF--------------LVRLLFELAEKAKPGVLF 89 (151)
T ss_pred CCCCCHHHHHHHHHHHh---hcCCCCeEEEehhhhhhhhHHHHHhhhh--------------hHhHHHHhhccCCCeEEE
Confidence 47999999999999997 2333456677654433322211111100 001111122235678999
Q ss_pred EcCCCch-----hhhhhhcCcC------CCCcEEEEecCchh
Q 005367 81 LDDLWER-----VDLKKIGVPL------PKNSAVVFTTRFVD 111 (700)
Q Consensus 81 lDdv~~~-----~~~~~l~~~~------~~gs~iiiTTr~~~ 111 (700)
+||++.. ..+......+ ..+..||+||....
T Consensus 90 lDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 90 IDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred EeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 9999853 2222222222 34778888887543
No 118
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.28 E-value=0.0044 Score=64.94 Aligned_cols=88 Identities=17% Similarity=0.116 Sum_probs=56.9
Q ss_pred cCcEEEEEcCCCchh--hhhhhc---CcCCCCcEEEEecCch-hhhhcccC-cceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWERV--DLKKIG---VPLPKNSAVVFTTRFV-DVCGRMEA-RRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~~--~~~~l~---~~~~~gs~iiiTTr~~-~~~~~~~~-~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
+++-++|||+++... ....+. ...+++..+|++|.+. .+...+.+ -..+.+.+++.++..+.+.+..+
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~----- 190 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG----- 190 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-----
Confidence 456688889998662 223232 2334477666666553 33333322 35789999999999988875432
Q ss_pred CCCChHHHHHHHHHHhCCCchHH
Q 005367 147 SHHSIPELAQTVAKECGGLPLAL 169 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~Plai 169 (700)
...+.+..+++.++|.|...
T Consensus 191 ---~~~~~a~~la~~s~G~~~~A 210 (394)
T PRK07940 191 ---VDPETARRAARASQGHIGRA 210 (394)
T ss_pred ---CCHHHHHHHHHHcCCCHHHH
Confidence 11566888999999999654
No 119
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.26 E-value=0.0066 Score=65.02 Aligned_cols=92 Identities=12% Similarity=0.101 Sum_probs=60.4
Q ss_pred cCcEEEEEcCCCch--hhhhhhcCc---CCCCcEEEEecCc-hhhhhccc-CcceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWER--VDLKKIGVP---LPKNSAVVFTTRF-VDVCGRME-ARRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~--~~~~~l~~~---~~~gs~iiiTTr~-~~~~~~~~-~~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
+++-++|+|+++.. +..+.+..- .++..++|++|.+ ..+...+. .-..+++..++.++..+.+.+.+..++..
T Consensus 115 ~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~ 194 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE 194 (491)
T ss_pred CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC
Confidence 45668999999755 234433332 3446666665543 33333222 23578999999999999999888665433
Q ss_pred CCCChHHHHHHHHHHhCCCchH
Q 005367 147 SHHSIPELAQTVAKECGGLPLA 168 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~Pla 168 (700)
. .++....|++.++|.+..
T Consensus 195 i---~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 195 H---DEESLKLIAENSSGSMRN 213 (491)
T ss_pred C---CHHHHHHHHHHcCCCHHH
Confidence 3 377888999999987753
No 120
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.25 E-value=0.0093 Score=56.68 Aligned_cols=168 Identities=13% Similarity=0.160 Sum_probs=99.1
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccCc-EEE
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTL-SKKK-FAL 79 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~r-~Ll 79 (700)
-|.|||.++|++.... ..-+...-+...+..+...+...+...+............+.....+.... +++| ..+
T Consensus 60 vGsGKTv~~Ral~~s~----~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v~l 135 (269)
T COG3267 60 VGSGKTVLRRALLASL----NEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPVVL 135 (269)
T ss_pred CCCchhHHHHHHHHhc----CCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 3899999999666655 122222223334556788888888888866322212222333333343333 3566 899
Q ss_pred EEcCCCch--hhhhhhcC---cCCCCc---EEEEecC--------chhhhhccc-CcceEeccCCChHhHHHHHHHHhcc
Q 005367 80 LLDDLWER--VDLKKIGV---PLPKNS---AVVFTTR--------FVDVCGRME-ARRTFKVECLSDEAAWELFREKVGE 142 (700)
Q Consensus 80 VlDdv~~~--~~~~~l~~---~~~~gs---~iiiTTr--------~~~~~~~~~-~~~~~~l~~L~~~~a~~l~~~~~~~ 142 (700)
++|+..+. .+++.++. .-..++ +|+..-. -....+.-. ....|++.|++.++...++..+..+
T Consensus 136 ~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~ 215 (269)
T COG3267 136 MVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEG 215 (269)
T ss_pred eehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhc
Confidence 99998655 23333321 111111 2332221 111111111 1223999999999999888888866
Q ss_pred cccCCCCChHHHHHHHHHHhCCCchHHHHHH
Q 005367 143 ETIESHHSIPELAQTVAKECGGLPLALITIG 173 (700)
Q Consensus 143 ~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 173 (700)
.....+--.++....|.....|.|.+|+.++
T Consensus 216 a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~ 246 (269)
T COG3267 216 AGLPEPLFSDDALLLIHEASQGIPRLINNLA 246 (269)
T ss_pred cCCCcccCChhHHHHHHHHhccchHHHHHHH
Confidence 5534444467888999999999999999886
No 121
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.22 E-value=0.0011 Score=67.94 Aligned_cols=85 Identities=16% Similarity=0.185 Sum_probs=54.6
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCc--cCHHHHHHHHHHHcCCCCCCCCCccHHHHHH----HHHHH-hc
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD--LQLEKIQETIRKKIGLCNDSWKNKSLEEKAQ----DIFKT-LS 73 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----~l~~~-l~ 73 (700)
++|+|||+|++.+++... .++|+..+||.+... .+..++++.+...+-...-.........+.. ..... -+
T Consensus 176 ~~g~GKTtL~~~i~~~I~--~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae~~~~~ 253 (415)
T TIGR00767 176 PPKAGKTVLLQKIAQAIT--RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEH 253 (415)
T ss_pred CCCCChhHHHHHHHHhhc--ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHHHHHHc
Confidence 479999999999999972 237999999987754 6899999999654432221111111111111 11111 25
Q ss_pred cCcEEEEEcCCCch
Q 005367 74 KKKFALLLDDLWER 87 (700)
Q Consensus 74 ~~r~LlVlDdv~~~ 87 (700)
+++++|++|.+...
T Consensus 254 GkdVVLlIDEitR~ 267 (415)
T TIGR00767 254 KKDVVILLDSITRL 267 (415)
T ss_pred CCCeEEEEEChhHH
Confidence 78999999999544
No 122
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.21 E-value=0.0072 Score=66.15 Aligned_cols=100 Identities=12% Similarity=0.098 Sum_probs=61.7
Q ss_pred cCcEEEEEcCCCchh--hhhhhcCc---CCCCcEEEEecCch-hhhhccc-CcceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWERV--DLKKIGVP---LPKNSAVVFTTRFV-DVCGRME-ARRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~~--~~~~l~~~---~~~gs~iiiTTr~~-~~~~~~~-~~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
+++-++|+|+++... ....+... .+....+|++|.+. .+...+. .-..+++..++.++..+.+.+.+..++..
T Consensus 118 ~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~ 197 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP 197 (527)
T ss_pred CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 566799999998653 23333332 33356666555433 2221111 12578999999999998888777543322
Q ss_pred CCCChHHHHHHHHHHhCCCc-hHHHHHHHHh
Q 005367 147 SHHSIPELAQTVAKECGGLP-LALITIGRAM 176 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~P-lai~~~~~~l 176 (700)
..++....|++.++|.+ .|++.+-..+
T Consensus 198 ---~~~~al~~la~~s~Gslr~al~lldqai 225 (527)
T PRK14969 198 ---FDATALQLLARAAAGSMRDALSLLDQAI 225 (527)
T ss_pred ---CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 23677789999999976 4555544333
No 123
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.20 E-value=0.0065 Score=67.05 Aligned_cols=96 Identities=14% Similarity=0.128 Sum_probs=61.2
Q ss_pred cCcEEEEEcCCCchh--hhhhhcCc---CCCCcEEEEecCchh-hhhcc-cCcceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWERV--DLKKIGVP---LPKNSAVVFTTRFVD-VCGRM-EARRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~~--~~~~l~~~---~~~gs~iiiTTr~~~-~~~~~-~~~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
+++-++|||+++... ....++.. .+...++|++|.+.. +...+ ..-..+++..++.++..+.+.+.+...++.
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~ 197 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA 197 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 456799999997653 23333332 234667776665432 21111 112467888999999999998888654433
Q ss_pred CCCChHHHHHHHHHHhCCCc-hHHHHH
Q 005367 147 SHHSIPELAQTVAKECGGLP-LALITI 172 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~P-lai~~~ 172 (700)
. .++....|++.++|.+ .|++.+
T Consensus 198 i---d~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 198 Y---EPPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred c---CHHHHHHHHHHhCCCHHHHHHHH
Confidence 2 3678899999999887 444444
No 124
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.18 E-value=0.0056 Score=64.54 Aligned_cols=137 Identities=15% Similarity=0.206 Sum_probs=75.1
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTL-SKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~Ll 79 (700)
++|+|||++|+++++.. ... |+.+.. . .+..... .........+.+.. .....+|
T Consensus 173 ppGtGKT~lAkaia~~~---~~~-----~i~v~~----~----~l~~~~~--------g~~~~~i~~~f~~a~~~~p~Il 228 (389)
T PRK03992 173 PPGTGKTLLAKAVAHET---NAT-----FIRVVG----S----ELVQKFI--------GEGARLVRELFELAREKAPSII 228 (389)
T ss_pred CCCCChHHHHHHHHHHh---CCC-----EEEeeh----H----HHhHhhc--------cchHHHHHHHHHHHHhcCCeEE
Confidence 58999999999999986 222 222211 1 1222111 01112223333322 3456899
Q ss_pred EEcCCCchh------------h----hhhhc---CcCCC--CcEEEEecCchhhhhcc-----cCcceEeccCCChHhHH
Q 005367 80 LLDDLWERV------------D----LKKIG---VPLPK--NSAVVFTTRFVDVCGRM-----EARRTFKVECLSDEAAW 133 (700)
Q Consensus 80 VlDdv~~~~------------~----~~~l~---~~~~~--gs~iiiTTr~~~~~~~~-----~~~~~~~l~~L~~~~a~ 133 (700)
+||+++... + +..+. ..+.. +..||.||...+..... .-+..++++..+.++-.
T Consensus 229 fiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~ 308 (389)
T PRK03992 229 FIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRL 308 (389)
T ss_pred EEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHH
Confidence 999997541 1 11121 11111 45677788765443221 12467999999999999
Q ss_pred HHHHHHhcccccCCCCChHHHHHHHHHHhCCC
Q 005367 134 ELFREKVGEETIESHHSIPELAQTVAKECGGL 165 (700)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 165 (700)
++|..++.......... ...+++.+.|.
T Consensus 309 ~Il~~~~~~~~~~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 309 EILKIHTRKMNLADDVD----LEELAELTEGA 336 (389)
T ss_pred HHHHHHhccCCCCCcCC----HHHHHHHcCCC
Confidence 99998875443222222 45566666664
No 125
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.17 E-value=0.0062 Score=67.39 Aligned_cols=99 Identities=15% Similarity=0.124 Sum_probs=62.9
Q ss_pred ccCcEEEEEcCCCch--hhhhhhcCc---CCCCcEEEEecCc-hhhhhccc-CcceEeccCCChHhHHHHHHHHhccccc
Q 005367 73 SKKKFALLLDDLWER--VDLKKIGVP---LPKNSAVVFTTRF-VDVCGRME-ARRTFKVECLSDEAAWELFREKVGEETI 145 (700)
Q Consensus 73 ~~~r~LlVlDdv~~~--~~~~~l~~~---~~~gs~iiiTTr~-~~~~~~~~-~~~~~~l~~L~~~~a~~l~~~~~~~~~~ 145 (700)
.+++-++|||+++.. +....++.- .+...++|.+|.+ ..+...+. .-..|.+.+++.++..+.+.+.+..++.
T Consensus 117 ~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i 196 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI 196 (647)
T ss_pred cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 356779999999765 334444333 3335565555544 33332222 1367999999999999999887644332
Q ss_pred CCCCChHHHHHHHHHHhCCCch-HHHHHHH
Q 005367 146 ESHHSIPELAQTVAKECGGLPL-ALITIGR 174 (700)
Q Consensus 146 ~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~~ 174 (700)
...++....|++.++|.+. |+..+-.
T Consensus 197 ---~~e~~aL~~Ia~~s~Gs~R~Al~lldq 223 (647)
T PRK07994 197 ---PFEPRALQLLARAADGSMRDALSLTDQ 223 (647)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2236777899999999775 4444433
No 126
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.17 E-value=0.011 Score=60.49 Aligned_cols=92 Identities=9% Similarity=0.102 Sum_probs=58.3
Q ss_pred cCcEEEEEcCCCch--hhhhhhcCc---CCCCcEEEEecCchhh-hhcccC-cceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWER--VDLKKIGVP---LPKNSAVVFTTRFVDV-CGRMEA-RRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~--~~~~~l~~~---~~~gs~iiiTTr~~~~-~~~~~~-~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
+++-++|||+++.. .....+..- .|++..+|+||.+.+. ...+.+ -..+.+.+++.+++.+.+.+......
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~~-- 182 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPESD-- 182 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccCC--
Confidence 34445678999865 333333332 3447777777766543 333222 25689999999999998876542211
Q ss_pred CCCChHHHHHHHHHHhCCCchHHHHH
Q 005367 147 SHHSIPELAQTVAKECGGLPLALITI 172 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~Plai~~~ 172 (700)
++.+..+++.++|.|.....+
T Consensus 183 -----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 183 -----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -----hHHHHHHHHHcCCCHHHHHHH
Confidence 455677889999999654333
No 127
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.13 E-value=0.015 Score=60.99 Aligned_cols=98 Identities=12% Similarity=0.139 Sum_probs=62.9
Q ss_pred cCcEEEEEcCCCch--hhhhhhcCc---CCCCcEEEEecCchh-hhhccc-CcceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWER--VDLKKIGVP---LPKNSAVVFTTRFVD-VCGRME-ARRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~--~~~~~l~~~---~~~gs~iiiTTr~~~-~~~~~~-~~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
+++-++|+|+++.. .....+... .++...+|++|.+.. +...+. ....+++.++++++..+.+...+...+..
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~ 195 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK 195 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 45568999998655 333333332 234666666765544 222221 23578999999999999998877544422
Q ss_pred CCCChHHHHHHHHHHhCCCchHHHHHHH
Q 005367 147 SHHSIPELAQTVAKECGGLPLALITIGR 174 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~Plai~~~~~ 174 (700)
. .++.+..+++.++|.|..+.....
T Consensus 196 i---~~~a~~~l~~~~~g~~~~a~~~le 220 (355)
T TIGR02397 196 I---EDEALELIARAADGSLRDALSLLD 220 (355)
T ss_pred C---CHHHHHHHHHHcCCChHHHHHHHH
Confidence 2 268888999999998866554443
No 128
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.13 E-value=0.011 Score=61.46 Aligned_cols=92 Identities=10% Similarity=0.049 Sum_probs=59.3
Q ss_pred cCcEEEEEcCCCchh--hhhhhc---CcCCCCcEEEEecCchh-hhhcccC-cceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWERV--DLKKIG---VPLPKNSAVVFTTRFVD-VCGRMEA-RRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~~--~~~~l~---~~~~~gs~iiiTTr~~~-~~~~~~~-~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
+++-++|+|+++... ....+. ...+++..+|++|.+.+ +...+.+ -..+.+.+++.++..+.+.+......
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-- 217 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-- 217 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC--
Confidence 466799999997652 233332 22344666777776543 3222222 35789999999999999987643211
Q ss_pred CCCChHHHHHHHHHHhCCCchHHHHH
Q 005367 147 SHHSIPELAQTVAKECGGLPLALITI 172 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~Plai~~~ 172 (700)
.+....+++.++|.|.....+
T Consensus 218 -----~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 218 -----DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred -----HHHHHHHHHHcCCCHHHHHHH
Confidence 333378899999999765443
No 129
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.12 E-value=0.0051 Score=65.16 Aligned_cols=97 Identities=13% Similarity=0.092 Sum_probs=62.3
Q ss_pred ccCcEEEEEcCCCch--hhhhhhcCcC---CCCcEEEEec-CchhhhhcccC-cceEeccCCChHhHHHHHHHHhccccc
Q 005367 73 SKKKFALLLDDLWER--VDLKKIGVPL---PKNSAVVFTT-RFVDVCGRMEA-RRTFKVECLSDEAAWELFREKVGEETI 145 (700)
Q Consensus 73 ~~~r~LlVlDdv~~~--~~~~~l~~~~---~~gs~iiiTT-r~~~~~~~~~~-~~~~~l~~L~~~~a~~l~~~~~~~~~~ 145 (700)
.++.-++|||+++.. +.++.++..+ +....+|.+| ....+...+.. -..|.+..++.++..+.+.+.+..++.
T Consensus 119 ~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi 198 (484)
T PRK14956 119 GGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV 198 (484)
T ss_pred cCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC
Confidence 356679999999865 3455554443 2244444444 43333333222 246999999999999988887755442
Q ss_pred CCCCChHHHHHHHHHHhCCCc-hHHHHH
Q 005367 146 ESHHSIPELAQTVAKECGGLP-LALITI 172 (700)
Q Consensus 146 ~~~~~~~~~~~~i~~~~~g~P-lai~~~ 172 (700)
. -.++....|++.++|.+ -|+..+
T Consensus 199 ~---~e~eAL~~Ia~~S~Gd~RdAL~lL 223 (484)
T PRK14956 199 Q---YDQEGLFWIAKKGDGSVRDMLSFM 223 (484)
T ss_pred C---CCHHHHHHHHHHcCChHHHHHHHH
Confidence 2 23778899999999987 444444
No 130
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.10 E-value=0.013 Score=60.37 Aligned_cols=92 Identities=15% Similarity=0.144 Sum_probs=59.0
Q ss_pred CcEEEEEcCCCchh--h---hhhhcCcCCCCcEEEEecCch-hhhhcc-cCcceEeccCCChHhHHHHHHHHhcccccCC
Q 005367 75 KKFALLLDDLWERV--D---LKKIGVPLPKNSAVVFTTRFV-DVCGRM-EARRTFKVECLSDEAAWELFREKVGEETIES 147 (700)
Q Consensus 75 ~r~LlVlDdv~~~~--~---~~~l~~~~~~gs~iiiTTr~~-~~~~~~-~~~~~~~l~~L~~~~a~~l~~~~~~~~~~~~ 147 (700)
.+-++|+|+++... . +..+....++.+++|+++... .+.+.. .....+++.++++++....+...+...+...
T Consensus 102 ~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i 181 (319)
T PRK00440 102 PFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEI 181 (319)
T ss_pred CceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCC
Confidence 35689999986542 2 333333344467777766432 221211 1234689999999999999988886544322
Q ss_pred CCChHHHHHHHHHHhCCCchHH
Q 005367 148 HHSIPELAQTVAKECGGLPLAL 169 (700)
Q Consensus 148 ~~~~~~~~~~i~~~~~g~Plai 169 (700)
.++.+..+++.++|.+.-+
T Consensus 182 ---~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 182 ---TDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred ---CHHHHHHHHHHcCCCHHHH
Confidence 3788899999999987553
No 131
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.08 E-value=0.0099 Score=68.10 Aligned_cols=94 Identities=14% Similarity=0.204 Sum_probs=60.5
Q ss_pred ccCcEEEEEcCCCch--hhhhhhcC---cCCCCcEEEEecCchh-hhhcccC-cceEeccCCChHhHHHHHHHHhccccc
Q 005367 73 SKKKFALLLDDLWER--VDLKKIGV---PLPKNSAVVFTTRFVD-VCGRMEA-RRTFKVECLSDEAAWELFREKVGEETI 145 (700)
Q Consensus 73 ~~~r~LlVlDdv~~~--~~~~~l~~---~~~~gs~iiiTTr~~~-~~~~~~~-~~~~~l~~L~~~~a~~l~~~~~~~~~~ 145 (700)
.+++-++|||+++.. .....|+. -.+....+|++|.+.+ +...+.. -..|++..++.++..+.+.+.+..+++
T Consensus 118 ~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv 197 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV 197 (824)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 356668999999866 23333333 3344666666554433 3333322 367899999999999888877644332
Q ss_pred CCCCChHHHHHHHHHHhCCCchHH
Q 005367 146 ESHHSIPELAQTVAKECGGLPLAL 169 (700)
Q Consensus 146 ~~~~~~~~~~~~i~~~~~g~Plai 169 (700)
. ...+....|++.++|.+..+
T Consensus 198 ~---id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 198 P---VEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred C---CCHHHHHHHHHHcCCCHHHH
Confidence 2 23677789999999977433
No 132
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.08 E-value=0.019 Score=62.20 Aligned_cols=95 Identities=11% Similarity=0.138 Sum_probs=62.0
Q ss_pred cCcEEEEEcCCCch--hhhhhhcCc---CCCCcEEEEecCchh-hhhccc-CcceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWER--VDLKKIGVP---LPKNSAVVFTTRFVD-VCGRME-ARRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~--~~~~~l~~~---~~~gs~iiiTTr~~~-~~~~~~-~~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
+++-++|+|+++.. +....++.. .++..++|++|.++. +...+. ....+++.+++.++..+.+.+.+...+..
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~ 195 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS 195 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 45669999999766 233333332 355777776666532 211111 23578999999999999988777554422
Q ss_pred CCCChHHHHHHHHHHhCCCchHHHH
Q 005367 147 SHHSIPELAQTVAKECGGLPLALIT 171 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~Plai~~ 171 (700)
..++.+..|++.++|.+.-+..
T Consensus 196 ---i~~~Al~~Ia~~s~GdlR~aln 217 (535)
T PRK08451 196 ---YEPEALEILARSGNGSLRDTLT 217 (535)
T ss_pred ---CCHHHHHHHHHHcCCcHHHHHH
Confidence 2378889999999998844433
No 133
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.06 E-value=0.013 Score=64.74 Aligned_cols=93 Identities=14% Similarity=0.161 Sum_probs=60.2
Q ss_pred cCcEEEEEcCCCch--hhhhhhcCcC---CCCcEEEEecCc-hhhhhccc-CcceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWER--VDLKKIGVPL---PKNSAVVFTTRF-VDVCGRME-ARRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~--~~~~~l~~~~---~~gs~iiiTTr~-~~~~~~~~-~~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
++.-++|||+++.. +....+..-+ +...++|++|.+ ..+...+. .-..+++..++.++..+.+.+.+...+..
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ 202 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP 202 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 35568999999866 3344444333 335566655543 33322221 23679999999999999998887654433
Q ss_pred CCCChHHHHHHHHHHhCCCchHH
Q 005367 147 SHHSIPELAQTVAKECGGLPLAL 169 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~Plai 169 (700)
. ..+....|++.++|.+.-+
T Consensus 203 i---e~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 203 A---EPQALRLLARAARGSMRDA 222 (618)
T ss_pred C---CHHHHHHHHHHcCCCHHHH
Confidence 2 3678889999999876433
No 134
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.03 E-value=8.8e-05 Score=62.75 Aligned_cols=92 Identities=26% Similarity=0.350 Sum_probs=77.8
Q ss_pred ccccccceeeeeccccccCCC-CC-CCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccccccccc
Q 005367 324 VRGWEMGRRLSLMKNSIKNLP-TI-PTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQ 401 (700)
Q Consensus 324 ~~~~~~l~~l~l~~~~~~~l~-~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~ 401 (700)
+....++...++++|.++++| .| ..++.+++|++++|.+.+.+.. +..++.|+.|+++.| .+...|.-+.++.+|-
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFN-PLNAEPRVIAPLIKLD 126 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccC-ccccchHHHHHHHhHH
Confidence 334467888899999999888 33 4567899999999999999988 889999999999999 5777788888899999
Q ss_pred eeccccCcccccchhh
Q 005367 402 LLDISYTRVRELPEEL 417 (700)
Q Consensus 402 ~L~l~~~~l~~lp~~~ 417 (700)
+|+..+|.+.++|-.+
T Consensus 127 ~Lds~~na~~eid~dl 142 (177)
T KOG4579|consen 127 MLDSPENARAEIDVDL 142 (177)
T ss_pred HhcCCCCccccCcHHH
Confidence 9999999888887653
No 135
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.02 E-value=0.0089 Score=65.57 Aligned_cols=100 Identities=14% Similarity=0.198 Sum_probs=64.8
Q ss_pred cCcEEEEEcCCCch--hhhhhhcCcC---CCCcEEEEecCc-hhhhhccc-CcceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWER--VDLKKIGVPL---PKNSAVVFTTRF-VDVCGRME-ARRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~--~~~~~l~~~~---~~gs~iiiTTr~-~~~~~~~~-~~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
+++-++|||+++.. +....+...+ ++...+|++|.+ ..+...+. .-..+++..++.++..+.+.+.+...+..
T Consensus 118 g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~ 197 (624)
T PRK14959 118 GRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD 197 (624)
T ss_pred CCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC
Confidence 56679999999766 3344444433 224555555544 33332221 12478999999999999888877544322
Q ss_pred CCCChHHHHHHHHHHhCCC-chHHHHHHHHh
Q 005367 147 SHHSIPELAQTVAKECGGL-PLALITIGRAM 176 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~-Plai~~~~~~l 176 (700)
...+.+..|++.++|. -.|++.+...+
T Consensus 198 ---id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 198 ---YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred ---CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2378888999999995 47777776544
No 136
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.01 E-value=0.0078 Score=63.78 Aligned_cols=93 Identities=11% Similarity=0.147 Sum_probs=59.6
Q ss_pred cCcEEEEEcCCCch--hhhhhhcCc---CCCCcEEEEec-Cchhhhhccc-CcceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWER--VDLKKIGVP---LPKNSAVVFTT-RFVDVCGRME-ARRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~--~~~~~l~~~---~~~gs~iiiTT-r~~~~~~~~~-~~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
+++-++|+|+++.. ++++.+... .++...+|++| +...+...+. ....+++.++++++..+.+.+.+...+..
T Consensus 126 ~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~ 205 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGIS 205 (397)
T ss_pred CCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 45668999999755 344444333 33356655544 4333333221 12578999999999988888877443322
Q ss_pred CCCChHHHHHHHHHHhCCCchHH
Q 005367 147 SHHSIPELAQTVAKECGGLPLAL 169 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~Plai 169 (700)
-.++.+..+++.++|.+.-+
T Consensus 206 ---i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 206 ---VDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred ---CCHHHHHHHHHHcCCCHHHH
Confidence 33788999999999977543
No 137
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.98 E-value=0.016 Score=57.30 Aligned_cols=163 Identities=17% Similarity=0.154 Sum_probs=99.5
Q ss_pred CCCcHHHHHHHHHhhcccCCC---CCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhcc-CcE
Q 005367 2 GGVGKTTLLTQINNKFVDNPT---DFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSK-KKF 77 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~---~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~r~ 77 (700)
+|.|||+++++++..+....+ .--.|+.|.+....+...+...|+.+++.+... ..+.......+.+.++. +--
T Consensus 70 snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~--~~~~~~~~~~~~~llr~~~vr 147 (302)
T PF05621_consen 70 SNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRP--RDRVAKLEQQVLRLLRRLGVR 147 (302)
T ss_pred CCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCC--CCCHHHHHHHHHHHHHHcCCc
Confidence 689999999999988743221 123678888989999999999999999987642 33444444445555544 556
Q ss_pred EEEEcCCCch---------hhhhhhcCcCCC---CcEEEEecCchhhhhccc-----CcceEeccCCCh-HhHHHHHHHH
Q 005367 78 ALLLDDLWER---------VDLKKIGVPLPK---NSAVVFTTRFVDVCGRME-----ARRTFKVECLSD-EAAWELFREK 139 (700)
Q Consensus 78 LlVlDdv~~~---------~~~~~l~~~~~~---gs~iiiTTr~~~~~~~~~-----~~~~~~l~~L~~-~~a~~l~~~~ 139 (700)
+||||.+.+. +.+..+ ..++. =+-|.|-|++.--+-..+ ....+.++.-.. ++..+|+...
T Consensus 148 mLIIDE~H~lLaGs~~~qr~~Ln~L-K~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~ 226 (302)
T PF05621_consen 148 MLIIDEFHNLLAGSYRKQREFLNAL-KFLGNELQIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASF 226 (302)
T ss_pred EEEeechHHHhcccHHHHHHHHHHH-HHHhhccCCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHH
Confidence 9999999765 112222 22222 244556665432221111 124556665554 4455555444
Q ss_pred hcccc--cCCCCChHHHHHHHHHHhCCCch
Q 005367 140 VGEET--IESHHSIPELAQTVAKECGGLPL 167 (700)
Q Consensus 140 ~~~~~--~~~~~~~~~~~~~i~~~~~g~Pl 167 (700)
...-+ ....-...+++..|...++|+.-
T Consensus 227 e~~LPLr~~S~l~~~~la~~i~~~s~G~iG 256 (302)
T PF05621_consen 227 ERALPLRKPSNLASPELARRIHERSEGLIG 256 (302)
T ss_pred HHhCCCCCCCCCCCHHHHHHHHHHcCCchH
Confidence 32111 12223457899999999999863
No 138
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.95 E-value=0.0029 Score=66.90 Aligned_cols=137 Identities=14% Similarity=0.174 Sum_probs=74.2
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHH-HHhccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIF-KTLSKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~r~Ll 79 (700)
++|+|||++|+++++.. ...| +.+..++ +...+. .. ....+..+. ....+.+.++
T Consensus 225 PPGTGKT~LAraIA~el---~~~f---i~V~~se----------L~~k~~-------Ge-~~~~vr~lF~~A~~~~P~IL 280 (438)
T PTZ00361 225 PPGTGKTLLAKAVANET---SATF---LRVVGSE----------LIQKYL-------GD-GPKLVRELFRVAEENAPSIV 280 (438)
T ss_pred CCCCCHHHHHHHHHHhh---CCCE---EEEecch----------hhhhhc-------ch-HHHHHHHHHHHHHhCCCcEE
Confidence 58999999999999986 3333 1221111 111111 00 111222222 2223567899
Q ss_pred EEcCCCchh----------------hhhhhcCc---C--CCCcEEEEecCchhhhhcc-----cCcceEeccCCChHhHH
Q 005367 80 LLDDLWERV----------------DLKKIGVP---L--PKNSAVVFTTRFVDVCGRM-----EARRTFKVECLSDEAAW 133 (700)
Q Consensus 80 VlDdv~~~~----------------~~~~l~~~---~--~~gs~iiiTTr~~~~~~~~-----~~~~~~~l~~L~~~~a~ 133 (700)
+||+++... .+..+... + ..+-.||.||...+..... ..+..++++..+.++..
T Consensus 281 fIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~ 360 (438)
T PTZ00361 281 FIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKR 360 (438)
T ss_pred eHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHH
Confidence 999975321 01111111 1 1256788888766554332 22467899999999999
Q ss_pred HHHHHHhcccccCCCCChHHHHHHHHHHhCCC
Q 005367 134 ELFREKVGEETIESHHSIPELAQTVAKECGGL 165 (700)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 165 (700)
++|..++.......... ...++..+.|+
T Consensus 361 ~Il~~~~~k~~l~~dvd----l~~la~~t~g~ 388 (438)
T PTZ00361 361 RIFEIHTSKMTLAEDVD----LEEFIMAKDEL 388 (438)
T ss_pred HHHHHHHhcCCCCcCcC----HHHHHHhcCCC
Confidence 99998875543222222 34444455444
No 139
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.95 E-value=0.0098 Score=62.51 Aligned_cols=137 Identities=15% Similarity=0.163 Sum_probs=74.3
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHH-HhccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFK-TLSKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~r~Ll 79 (700)
++|+|||++|+++++.. ...| +.+.. ..+...... . .......+.. .....+.+|
T Consensus 187 ppGTGKT~LAkalA~~l---~~~f---i~i~~----------s~l~~k~~g-------e-~~~~lr~lf~~A~~~~P~IL 242 (398)
T PTZ00454 187 PPGTGKTMLAKAVAHHT---TATF---IRVVG----------SEFVQKYLG-------E-GPRMVRDVFRLARENAPSII 242 (398)
T ss_pred CCCCCHHHHHHHHHHhc---CCCE---EEEeh----------HHHHHHhcc-------h-hHHHHHHHHHHHHhcCCeEE
Confidence 58999999999999986 3222 12211 111222110 0 1112222222 224577999
Q ss_pred EEcCCCchh----------------hhhhhcCc---CC--CCcEEEEecCchhhhhc-c----cCcceEeccCCChHhHH
Q 005367 80 LLDDLWERV----------------DLKKIGVP---LP--KNSAVVFTTRFVDVCGR-M----EARRTFKVECLSDEAAW 133 (700)
Q Consensus 80 VlDdv~~~~----------------~~~~l~~~---~~--~gs~iiiTTr~~~~~~~-~----~~~~~~~l~~L~~~~a~ 133 (700)
+||+++... .+..+... +. .+..||.||...+..+. + .-+..++++..+.++..
T Consensus 243 fIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~ 322 (398)
T PTZ00454 243 FIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKR 322 (398)
T ss_pred EEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHH
Confidence 999986420 11122111 11 25568888876655432 1 22467899999999988
Q ss_pred HHHHHHhcccccCCCCChHHHHHHHHHHhCCC
Q 005367 134 ELFREKVGEETIESHHSIPELAQTVAKECGGL 165 (700)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 165 (700)
++|..+....+.....+ ...+++...|+
T Consensus 323 ~Il~~~~~~~~l~~dvd----~~~la~~t~g~ 350 (398)
T PTZ00454 323 LIFQTITSKMNLSEEVD----LEDFVSRPEKI 350 (398)
T ss_pred HHHHHHHhcCCCCcccC----HHHHHHHcCCC
Confidence 88887765433222222 34556666555
No 140
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.94 E-value=0.024 Score=63.21 Aligned_cols=91 Identities=13% Similarity=0.135 Sum_probs=59.6
Q ss_pred cCcEEEEEcCCCch--hhhhhhcC---cCCCCcEEEE-ecCchhhhhccc-CcceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWER--VDLKKIGV---PLPKNSAVVF-TTRFVDVCGRME-ARRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~--~~~~~l~~---~~~~gs~iii-TTr~~~~~~~~~-~~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
+++-++|+|+++.. +..+.+.. -.+.+..+|+ ||+...+...+. ....+++.++++++....+.+.+...+..
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~ 199 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT 199 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 35568899998765 23444433 3344666555 444444443332 23579999999999999998877554433
Q ss_pred CCCChHHHHHHHHHHhCCCch
Q 005367 147 SHHSIPELAQTVAKECGGLPL 167 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~Pl 167 (700)
.+ .+.+..|++.++|-..
T Consensus 200 i~---~~al~~La~~s~gdlr 217 (614)
T PRK14971 200 AE---PEALNVIAQKADGGMR 217 (614)
T ss_pred CC---HHHHHHHHHHcCCCHH
Confidence 22 6788999999999654
No 141
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.94 E-value=0.0093 Score=64.19 Aligned_cols=126 Identities=16% Similarity=0.212 Sum_probs=69.1
Q ss_pred CCCCcHHHHHHHHHhhcccC--CCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-----c
Q 005367 1 MGGVGKTTLLTQINNKFVDN--PTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTL-----S 73 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l-----~ 73 (700)
++|+|||++|+++++..... ........|+++..+ .++... ....+..+..+.+.. .
T Consensus 224 PPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~--------eLl~ky--------vGete~~ir~iF~~Ar~~a~~ 287 (512)
T TIGR03689 224 PPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP--------ELLNKY--------VGETERQIRLIFQRAREKASD 287 (512)
T ss_pred CCCCcHHHHHHHHHHhhccccccccCCceeEEeccch--------hhcccc--------cchHHHHHHHHHHHHHHHhhc
Confidence 58999999999999987111 001223455554332 111111 011112222222222 2
Q ss_pred cCcEEEEEcCCCchh---------h-----hhhhcC---cCCC--CcEEEEecCchhhhhcc-----cCcceEeccCCCh
Q 005367 74 KKKFALLLDDLWERV---------D-----LKKIGV---PLPK--NSAVVFTTRFVDVCGRM-----EARRTFKVECLSD 129 (700)
Q Consensus 74 ~~r~LlVlDdv~~~~---------~-----~~~l~~---~~~~--gs~iiiTTr~~~~~~~~-----~~~~~~~l~~L~~ 129 (700)
+++++++||+++... + +..+.. .+.. +..||.||...+..+.. +-+..++++..+.
T Consensus 288 g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~ 367 (512)
T TIGR03689 288 GRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDA 367 (512)
T ss_pred CCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCH
Confidence 468999999997431 1 112222 2222 44566677665553321 2245699999999
Q ss_pred HhHHHHHHHHhcc
Q 005367 130 EAAWELFREKVGE 142 (700)
Q Consensus 130 ~~a~~l~~~~~~~ 142 (700)
++..++|..+...
T Consensus 368 e~r~~Il~~~l~~ 380 (512)
T TIGR03689 368 EAAADIFSKYLTD 380 (512)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988743
No 142
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.93 E-value=0.0092 Score=59.96 Aligned_cols=68 Identities=7% Similarity=-0.003 Sum_probs=39.8
Q ss_pred cEEEEEcCCCch-----------hhhhhhcCcC---CCCcEEEEecCchhhhhc--c------cCcceEeccCCChHhHH
Q 005367 76 KFALLLDDLWER-----------VDLKKIGVPL---PKNSAVVFTTRFVDVCGR--M------EARRTFKVECLSDEAAW 133 (700)
Q Consensus 76 r~LlVlDdv~~~-----------~~~~~l~~~~---~~gs~iiiTTr~~~~~~~--~------~~~~~~~l~~L~~~~a~ 133 (700)
+-+|+||++... +.++.+...+ ..+.+||+++........ . .....+++++++.+|-.
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~ 201 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELL 201 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHH
Confidence 368899999632 1223332222 224556666543222111 1 11457999999999999
Q ss_pred HHHHHHhccc
Q 005367 134 ELFREKVGEE 143 (700)
Q Consensus 134 ~l~~~~~~~~ 143 (700)
+++...+...
T Consensus 202 ~I~~~~l~~~ 211 (284)
T TIGR02880 202 VIAGLMLKEQ 211 (284)
T ss_pred HHHHHHHHHh
Confidence 9998887543
No 143
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.92 E-value=0.0012 Score=59.94 Aligned_cols=104 Identities=20% Similarity=0.271 Sum_probs=48.0
Q ss_pred eEEEccCCcccccCCcccccccccceeccccCcccccchhhh-cCCCCCEEecccccCc--cccchhhhcCCCccceeec
Q 005367 377 TVLKMSGNETLRQLPMGISKLVSLQLLDISYTRVRELPEELK-ALVNLRCLNLDWAGEL--VKVPQQLLSNFSRLRVLRM 453 (700)
Q Consensus 377 ~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~-~l~~L~~L~l~~~~~~--~~~p~~~~~~l~~L~~L~l 453 (700)
..+||++| .+..++ .+..++.|.+|.+..|+|+.+-..+. .+++|..|.+.+|+.. +.+.+ +..|++|+.|.+
T Consensus 45 d~iDLtdN-dl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p--La~~p~L~~Ltl 120 (233)
T KOG1644|consen 45 DAIDLTDN-DLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP--LASCPKLEYLTL 120 (233)
T ss_pred ceeccccc-chhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch--hccCCccceeee
Confidence 44455555 233332 34445555555555555554433332 3445555555554321 12222 445556666665
Q ss_pred cccCcccccCcccchHHHHhcCCCcceEEEEEec
Q 005367 454 FATGLISFYSWHENVAEELLGLKYLEVLEITFRR 487 (700)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 487 (700)
-+|.......+. ...+..+++|+.|++..-.
T Consensus 121 l~Npv~~k~~YR---~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 121 LGNPVEHKKNYR---LYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cCCchhcccCce---eEEEEecCcceEeehhhhh
Confidence 555443221111 1124556677777766433
No 144
>CHL00181 cbbX CbbX; Provisional
Probab=96.86 E-value=0.014 Score=58.59 Aligned_cols=125 Identities=10% Similarity=0.076 Sum_probs=65.1
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
.+|+|||++|+.+++... ..+.-...-|+.++ .. .+...+... . ... ...+.+.- ..-+|+
T Consensus 67 ~pGtGKT~lAr~la~~~~-~~g~~~~~~~~~v~----~~----~l~~~~~g~----~---~~~-~~~~l~~a--~ggVLf 127 (287)
T CHL00181 67 SPGTGKTTVALKMADILY-KLGYIKKGHLLTVT----RD----DLVGQYIGH----T---APK-TKEVLKKA--MGGVLF 127 (287)
T ss_pred CCCCCHHHHHHHHHHHHH-HcCCCCCCceEEec----HH----HHHHHHhcc----c---hHH-HHHHHHHc--cCCEEE
Confidence 489999999999988751 11111111133333 11 222222110 0 111 12222221 235999
Q ss_pred EcCCCch-----------hhhhhhcCcC---CCCcEEEEecCchhhhhcc--------cCcceEeccCCChHhHHHHHHH
Q 005367 81 LDDLWER-----------VDLKKIGVPL---PKNSAVVFTTRFVDVCGRM--------EARRTFKVECLSDEAAWELFRE 138 (700)
Q Consensus 81 lDdv~~~-----------~~~~~l~~~~---~~gs~iiiTTr~~~~~~~~--------~~~~~~~l~~L~~~~a~~l~~~ 138 (700)
||++... +..+.+...+ ..+.+||.++....+.... .-...+++++++.+|..+++.+
T Consensus 128 IDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~ 207 (287)
T CHL00181 128 IDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKI 207 (287)
T ss_pred EEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHH
Confidence 9999642 2233333322 2245666666543332111 1245799999999999999988
Q ss_pred Hhcccc
Q 005367 139 KVGEET 144 (700)
Q Consensus 139 ~~~~~~ 144 (700)
.+....
T Consensus 208 ~l~~~~ 213 (287)
T CHL00181 208 MLEEQQ 213 (287)
T ss_pred HHHHhc
Confidence 885543
No 145
>PRK04132 replication factor C small subunit; Provisional
Probab=96.85 E-value=0.033 Score=63.58 Aligned_cols=150 Identities=13% Similarity=0.073 Sum_probs=92.6
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCC-CEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDF-DYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~Ll 79 (700)
|.|+||||+|.+++++. -. +.+ ..++-+++++..+...+. .+.+.+....+ . -..+.-++
T Consensus 574 Ph~lGKTT~A~ala~~l-~g-~~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~---~-------------~~~~~KVv 634 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FG-ENWRHNFLELNASDERGINVIR-EKVKEFARTKP---I-------------GGASFKII 634 (846)
T ss_pred CCcccHHHHHHHHHHhh-hc-ccccCeEEEEeCCCcccHHHHH-HHHHHHHhcCC---c-------------CCCCCEEE
Confidence 46899999999999996 11 222 356777887755554333 33333211000 0 01245799
Q ss_pred EEcCCCchh--hhhhh---cCcCCCCcEEEEecCchhh-hhcccC-cceEeccCCChHhHHHHHHHHhcccccCCCCChH
Q 005367 80 LLDDLWERV--DLKKI---GVPLPKNSAVVFTTRFVDV-CGRMEA-RRTFKVECLSDEAAWELFREKVGEETIESHHSIP 152 (700)
Q Consensus 80 VlDdv~~~~--~~~~l---~~~~~~gs~iiiTTr~~~~-~~~~~~-~~~~~l~~L~~~~a~~l~~~~~~~~~~~~~~~~~ 152 (700)
|+|+++... +...+ ....+...++|.++.+..- ...+.+ -..+++.++++++..+.+.+.+..++... .+
T Consensus 635 IIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i---~~ 711 (846)
T PRK04132 635 FLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL---TE 711 (846)
T ss_pred EEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC---CH
Confidence 999998773 33333 3334457777776665432 222222 25789999999999888877764433222 26
Q ss_pred HHHHHHHHHhCCCc-hHHHHH
Q 005367 153 ELAQTVAKECGGLP-LALITI 172 (700)
Q Consensus 153 ~~~~~i~~~~~g~P-lai~~~ 172 (700)
+....|++.++|-+ .|++.+
T Consensus 712 e~L~~Ia~~s~GDlR~AIn~L 732 (846)
T PRK04132 712 EGLQAILYIAEGDMRRAINIL 732 (846)
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 78899999999977 444444
No 146
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.84 E-value=0.0071 Score=62.62 Aligned_cols=168 Identities=21% Similarity=0.197 Sum_probs=96.8
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCC--EEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEE
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFD--YVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFAL 79 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~Ll 79 (700)
.|.|||.|+.++++.. ..... .++++. .+....++...+.. ...+.+++.. .-=++
T Consensus 122 ~GlGKTHLl~Aign~~---~~~~~~a~v~y~~------se~f~~~~v~a~~~-----------~~~~~Fk~~y--~~dll 179 (408)
T COG0593 122 VGLGKTHLLQAIGNEA---LANGPNARVVYLT------SEDFTNDFVKALRD-----------NEMEKFKEKY--SLDLL 179 (408)
T ss_pred CCCCHHHHHHHHHHHH---HhhCCCceEEecc------HHHHHHHHHHHHHh-----------hhHHHHHHhh--ccCee
Confidence 5999999999999997 44443 344432 34444444444421 2223334443 23389
Q ss_pred EEcCCCchh-------hhhhhcCcC-CCCcEEEEecCc---------hhhhhcccCcceEeccCCChHhHHHHHHHHhcc
Q 005367 80 LLDDLWERV-------DLKKIGVPL-PKNSAVVFTTRF---------VDVCGRMEARRTFKVECLSDEAAWELFREKVGE 142 (700)
Q Consensus 80 VlDdv~~~~-------~~~~l~~~~-~~gs~iiiTTr~---------~~~~~~~~~~~~~~l~~L~~~~a~~l~~~~~~~ 142 (700)
++||++-.. ++-.+...+ ..|..||+|++. ..+..++...-.+++++.+++.....+.+.+..
T Consensus 180 lIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~ 259 (408)
T COG0593 180 LIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAED 259 (408)
T ss_pred eechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHh
Confidence 999996431 122222222 236789999853 223344455678999999999999999998866
Q ss_pred cccCCCCChHHHHHHHHHHhCCC----chHHHHHHHHhccC---CChHHHHHHHHHHHh
Q 005367 143 ETIESHHSIPELAQTVAKECGGL----PLALITIGRAMAYK---KTPEEWRYAIEVLRR 194 (700)
Q Consensus 143 ~~~~~~~~~~~~~~~i~~~~~g~----Plai~~~~~~l~~~---~~~~~~~~~l~~~~~ 194 (700)
.+...+ +++..-+++..... .-|+..+..+-... -+.+.-++++..+..
T Consensus 260 ~~~~i~---~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~ 315 (408)
T COG0593 260 RGIEIP---DEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLR 315 (408)
T ss_pred cCCCCC---HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhc
Confidence 554555 56666666665543 33443333222111 245555555555444
No 147
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.84 E-value=0.012 Score=60.64 Aligned_cols=93 Identities=9% Similarity=0.039 Sum_probs=57.7
Q ss_pred cCcEEEEEcCCCchh--hhhhhcC---cCCCCcEEE-EecCchhhhhcccC-cceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWERV--DLKKIGV---PLPKNSAVV-FTTRFVDVCGRMEA-RRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~~--~~~~l~~---~~~~gs~ii-iTTr~~~~~~~~~~-~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
+++-++|+|+++... ....+.. -.+.+..+| +|++...+...+.+ -..+.+.+++.++..+++.+.... .
T Consensus 140 g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-~-- 216 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-Q-- 216 (351)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-c--
Confidence 466799999998662 2333322 233355544 44443333322221 258999999999999999874311 1
Q ss_pred CCCChHHHHHHHHHHhCCCchHHHH
Q 005367 147 SHHSIPELAQTVAKECGGLPLALIT 171 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~Plai~~ 171 (700)
. ..++.+..+++.++|.|.....
T Consensus 217 -~-~~~~~~~~i~~~s~G~pr~Al~ 239 (351)
T PRK09112 217 -G-SDGEITEALLQRSKGSVRKALL 239 (351)
T ss_pred -C-CCHHHHHHHHHHcCCCHHHHHH
Confidence 1 2356678999999999975443
No 148
>PRK08116 hypothetical protein; Validated
Probab=96.83 E-value=0.0024 Score=63.41 Aligned_cols=90 Identities=26% Similarity=0.295 Sum_probs=50.9
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEEE
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALLL 81 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVl 81 (700)
+|+|||.||.++++.. ......+++++ ..+++..+...+... ......+ +.+.+.+-. ||||
T Consensus 123 ~GtGKThLa~aia~~l---~~~~~~v~~~~------~~~ll~~i~~~~~~~----~~~~~~~----~~~~l~~~d-lLvi 184 (268)
T PRK08116 123 VGTGKTYLAACIANEL---IEKGVPVIFVN------FPQLLNRIKSTYKSS----GKEDENE----IIRSLVNAD-LLIL 184 (268)
T ss_pred CCCCHHHHHHHHHHHH---HHcCCeEEEEE------HHHHHHHHHHHHhcc----ccccHHH----HHHHhcCCC-EEEE
Confidence 7999999999999997 22334566665 334455555444321 1112222 333344444 8999
Q ss_pred cCCCc--hhhh--hhhcCc----CCCCcEEEEecCc
Q 005367 82 DDLWE--RVDL--KKIGVP----LPKNSAVVFTTRF 109 (700)
Q Consensus 82 Ddv~~--~~~~--~~l~~~----~~~gs~iiiTTr~ 109 (700)
||+.. ..+| +.+... ...+..+||||..
T Consensus 185 DDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 185 DDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred ecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 99942 2222 222221 2346789999974
No 149
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.82 E-value=0.0072 Score=60.14 Aligned_cols=67 Identities=10% Similarity=0.116 Sum_probs=40.4
Q ss_pred cEEEEEcCCCch----------hhhhhhcCcCCC---CcEEEEecCchhh----------hhcccCcceEeccCCChHhH
Q 005367 76 KFALLLDDLWER----------VDLKKIGVPLPK---NSAVVFTTRFVDV----------CGRMEARRTFKVECLSDEAA 132 (700)
Q Consensus 76 r~LlVlDdv~~~----------~~~~~l~~~~~~---gs~iiiTTr~~~~----------~~~~~~~~~~~l~~L~~~~a 132 (700)
..+|+||+++.. +.++.+...+.. ...+|+++...+. ..++ ...+++++++.+|-
T Consensus 106 ~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf--~~~i~f~~~~~~el 183 (261)
T TIGR02881 106 GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRF--PISIDFPDYTVEEL 183 (261)
T ss_pred CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhcc--ceEEEECCCCHHHH
Confidence 358899999752 234444333322 3345555543222 1121 34689999999999
Q ss_pred HHHHHHHhcccc
Q 005367 133 WELFREKVGEET 144 (700)
Q Consensus 133 ~~l~~~~~~~~~ 144 (700)
.+++.+.+....
T Consensus 184 ~~Il~~~~~~~~ 195 (261)
T TIGR02881 184 MEIAERMVKERE 195 (261)
T ss_pred HHHHHHHHHHcC
Confidence 999988875443
No 150
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.81 E-value=0.00094 Score=63.40 Aligned_cols=84 Identities=26% Similarity=0.358 Sum_probs=49.0
Q ss_pred ccccceeeeeccccccCCCCCCCCCceeEEEecCC--CCcccccccccCCCcceEEEccCCcccccCC--cccccccccc
Q 005367 326 GWEMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRN--PLTTIAGGFFQSMPCLTVLKMSGNETLRQLP--MGISKLVSLQ 401 (700)
Q Consensus 326 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp--~~~~~l~~L~ 401 (700)
.+..++.+++.+..++.+..+..+++|+.|.++.| .+..-.+-...++++|++|++++| .+..+. ..+..+++|.
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLK 119 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcchh
Confidence 34566777777777777777777778888888877 333333333456677777777777 233210 1223344455
Q ss_pred eeccccCcc
Q 005367 402 LLDISYTRV 410 (700)
Q Consensus 402 ~L~l~~~~l 410 (700)
.|++..|..
T Consensus 120 ~Ldl~n~~~ 128 (260)
T KOG2739|consen 120 SLDLFNCSV 128 (260)
T ss_pred hhhcccCCc
Confidence 555555433
No 151
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.80 E-value=0.02 Score=62.56 Aligned_cols=96 Identities=16% Similarity=0.189 Sum_probs=59.1
Q ss_pred CcEEEEEcCCCch--hhhhhhcCc---CCCCcEEEEec-Cchhhhhcc-cCcceEeccCCChHhHHHHHHHHhcccccCC
Q 005367 75 KKFALLLDDLWER--VDLKKIGVP---LPKNSAVVFTT-RFVDVCGRM-EARRTFKVECLSDEAAWELFREKVGEETIES 147 (700)
Q Consensus 75 ~r~LlVlDdv~~~--~~~~~l~~~---~~~gs~iiiTT-r~~~~~~~~-~~~~~~~l~~L~~~~a~~l~~~~~~~~~~~~ 147 (700)
++-++|+|+++.. .....+..- .++...+|++| ....+...+ .....+++.+++.++....+.+.+...+...
T Consensus 119 ~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I 198 (605)
T PRK05896 119 KYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI 198 (605)
T ss_pred CcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC
Confidence 4457999999764 334444332 23355555444 333332222 1235789999999999998888775433222
Q ss_pred CCChHHHHHHHHHHhCCCc-hHHHHHH
Q 005367 148 HHSIPELAQTVAKECGGLP-LALITIG 173 (700)
Q Consensus 148 ~~~~~~~~~~i~~~~~g~P-lai~~~~ 173 (700)
.++.+..+++.++|.+ .|+..+-
T Consensus 199 ---s~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 199 ---EDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred ---CHHHHHHHHHHcCCcHHHHHHHHH
Confidence 2677889999999966 4444443
No 152
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.78 E-value=0.034 Score=58.48 Aligned_cols=91 Identities=11% Similarity=0.115 Sum_probs=56.8
Q ss_pred cCcEEEEEcCCCch--hhhhhhcC---cCCCCcEEEEec-Cchhhhhcc-cCcceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWER--VDLKKIGV---PLPKNSAVVFTT-RFVDVCGRM-EARRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~--~~~~~l~~---~~~~gs~iiiTT-r~~~~~~~~-~~~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
+++-++|+|+++.. ..++.+.. ..+....+|++| ....+...+ .....++..++++++....+.+.+...+..
T Consensus 107 ~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~ 186 (367)
T PRK14970 107 GKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK 186 (367)
T ss_pred CCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCC
Confidence 35568999998654 23444422 223345555555 332332222 123578999999999999998877554432
Q ss_pred CCCChHHHHHHHHHHhCCCch
Q 005367 147 SHHSIPELAQTVAKECGGLPL 167 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~Pl 167 (700)
.+ ++.+..+++.++|.+-
T Consensus 187 i~---~~al~~l~~~~~gdlr 204 (367)
T PRK14970 187 FE---DDALHIIAQKADGALR 204 (367)
T ss_pred CC---HHHHHHHHHhCCCCHH
Confidence 33 6888899999998654
No 153
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.78 E-value=0.025 Score=62.77 Aligned_cols=94 Identities=13% Similarity=0.146 Sum_probs=58.9
Q ss_pred cCcEEEEEcCCCchh--hhhhhcCc---CCCCcEEEE-ecCchhhhhccc-CcceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWERV--DLKKIGVP---LPKNSAVVF-TTRFVDVCGRME-ARRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~~--~~~~l~~~---~~~gs~iii-TTr~~~~~~~~~-~~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
+++-++|+|+++... ..+.+..- .++...+|+ |++...+...+. ....+++.+++.++....+.+.+...+..
T Consensus 126 ~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~ 205 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ 205 (620)
T ss_pred CCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC
Confidence 456688999987653 34444332 333455444 444444433322 24679999999999888888776443322
Q ss_pred CCCChHHHHHHHHHHhCCCch-HHH
Q 005367 147 SHHSIPELAQTVAKECGGLPL-ALI 170 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~Pl-ai~ 170 (700)
..++.+..+++.++|..- |+.
T Consensus 206 ---I~~eal~~La~~s~Gdlr~al~ 227 (620)
T PRK14954 206 ---IDADALQLIARKAQGSMRDAQS 227 (620)
T ss_pred ---CCHHHHHHHHHHhCCCHHHHHH
Confidence 237888999999999553 444
No 154
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.78 E-value=0.032 Score=59.88 Aligned_cols=96 Identities=13% Similarity=0.134 Sum_probs=59.6
Q ss_pred cCcEEEEEcCCCch--hhhhhhcC---cCCCCcEEEEecC-chhhhhccc-CcceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWER--VDLKKIGV---PLPKNSAVVFTTR-FVDVCGRME-ARRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~--~~~~~l~~---~~~~gs~iiiTTr-~~~~~~~~~-~~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
+++-++|+|+++.. +..+.+.. ..+++..+|++|. ...+...+. .-..+++.++++++..+.+.+.+...+..
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~ 199 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE 199 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 56678999998755 22333322 2233555665553 333332221 23578999999999998888776543322
Q ss_pred CCCChHHHHHHHHHHhCCCc-hHHHHH
Q 005367 147 SHHSIPELAQTVAKECGGLP-LALITI 172 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~P-lai~~~ 172 (700)
..++.+..+++.++|.+ .|++.+
T Consensus 200 ---i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 200 ---TSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred ---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 23788899999999965 444433
No 155
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.76 E-value=0.027 Score=62.96 Aligned_cols=97 Identities=15% Similarity=0.105 Sum_probs=60.3
Q ss_pred cCcEEEEEcCCCch--hhhhhhcCc---CCCCcEEE-EecCchhhhhccc-CcceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWER--VDLKKIGVP---LPKNSAVV-FTTRFVDVCGRME-ARRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~--~~~~~l~~~---~~~gs~ii-iTTr~~~~~~~~~-~~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
+++-++|+|+++.. ..+..+..- .|+...+| +|++...+...+. .-..+++.+++.++..+.+...+...+..
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~ 196 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENIS 196 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 56679999998755 334444332 23355544 4544444433222 23589999999999998888776443322
Q ss_pred CCCChHHHHHHHHHHhCCCc-hHHHHHH
Q 005367 147 SHHSIPELAQTVAKECGGLP-LALITIG 173 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~P-lai~~~~ 173 (700)
...+.+..+++.++|.+ .|+..+.
T Consensus 197 ---id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 197 ---YEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred ---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 22667889999999866 4444443
No 156
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.71 E-value=0.019 Score=55.32 Aligned_cols=65 Identities=20% Similarity=0.124 Sum_probs=46.4
Q ss_pred EEEEecCchhhhhccc--CcceEeccCCChHhHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCCchHH
Q 005367 102 AVVFTTRFVDVCGRME--ARRTFKVECLSDEAAWELFREKVGEETIESHHSIPELAQTVAKECGGLPLAL 169 (700)
Q Consensus 102 ~iiiTTr~~~~~~~~~--~~~~~~l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 169 (700)
-|=.|||--.+-.... -....+++..+.+|-.+...+.+..-+.... ++.+.+|++...|-|.-.
T Consensus 154 LIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~---~~~a~eIA~rSRGTPRIA 220 (332)
T COG2255 154 LIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEID---EEAALEIARRSRGTPRIA 220 (332)
T ss_pred EeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCC---hHHHHHHHHhccCCcHHH
Confidence 3446888544432221 2356789999999999999998854443333 789999999999999543
No 157
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=96.68 E-value=0.0093 Score=66.61 Aligned_cols=110 Identities=13% Similarity=0.004 Sum_probs=64.4
Q ss_pred HHHHHHHHHhccCcEEEEEcCCCch--hhhhhhcCcCCC---CcEEEE--ecCchhhh-hccc-CcceEeccCCChHhHH
Q 005367 63 EKAQDIFKTLSKKKFALLLDDLWER--VDLKKIGVPLPK---NSAVVF--TTRFVDVC-GRME-ARRTFKVECLSDEAAW 133 (700)
Q Consensus 63 ~~~~~l~~~l~~~r~LlVlDdv~~~--~~~~~l~~~~~~---gs~iii--TTr~~~~~-~~~~-~~~~~~l~~L~~~~a~ 133 (700)
..+..+...++++++.++-|+.|.. ..|+.++..+.. ...|+| ||++.... ..+. .-..+.+.+++.++..
T Consensus 280 ~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~ 359 (615)
T TIGR02903 280 LLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIA 359 (615)
T ss_pred HHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHH
Confidence 3466677777778888886665543 346666544443 233444 56644321 1111 1246789999999999
Q ss_pred HHHHHHhcccccCCCCChHHHHHHHHHHhCCCchHHHHHHHH
Q 005367 134 ELFREKVGEETIESHHSIPELAQTVAKECGGLPLALITIGRA 175 (700)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~ 175 (700)
+++.+.+...+... .++....|.+....-+.|++.++..
T Consensus 360 ~Il~~~a~~~~v~l---s~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 360 LIVLNAAEKINVHL---AAGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred HHHHHHHHHcCCCC---CHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 99998875433111 2455555555554446666666544
No 158
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.66 E-value=0.034 Score=61.51 Aligned_cols=96 Identities=11% Similarity=0.139 Sum_probs=61.5
Q ss_pred cCcEEEEEcCCCchh--hhhhhcC---cCCCCcEEEEec-Cchhhhhccc-CcceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWERV--DLKKIGV---PLPKNSAVVFTT-RFVDVCGRME-ARRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~~--~~~~l~~---~~~~gs~iiiTT-r~~~~~~~~~-~~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
.++-++|+|+++... ..+.+.. -.+++..+|++| ....+...+. .-..+++..++.++..+.+.+.+...+..
T Consensus 131 a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~ 210 (598)
T PRK09111 131 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE 210 (598)
T ss_pred CCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 455689999997553 3444332 234466666555 3333332222 22578999999999999998887554422
Q ss_pred CCCChHHHHHHHHHHhCCCchHHHHH
Q 005367 147 SHHSIPELAQTVAKECGGLPLALITI 172 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~Plai~~~ 172 (700)
. .++....|++.++|.+.-+...
T Consensus 211 i---~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 211 V---EDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred C---CHHHHHHHHHHcCCCHHHHHHH
Confidence 2 3688899999999988554433
No 159
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.63 E-value=0.056 Score=58.50 Aligned_cols=97 Identities=13% Similarity=0.112 Sum_probs=59.3
Q ss_pred cCcEEEEEcCCCch--hhhhhhcC---cCCCCcEEEEec-Cchhhhhcc-cCcceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWER--VDLKKIGV---PLPKNSAVVFTT-RFVDVCGRM-EARRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~--~~~~~l~~---~~~~gs~iiiTT-r~~~~~~~~-~~~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
+++-++|+|+++.. ...+.+.. -.++...+|++| +...+...+ .....+++.+++.++....+.+.+...+..
T Consensus 118 ~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~ 197 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE 197 (486)
T ss_pred CCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 46679999998755 23333322 223345555444 433332221 123578999999999998888877544322
Q ss_pred CCCChHHHHHHHHHHhCCCchHHHHHH
Q 005367 147 SHHSIPELAQTVAKECGGLPLALITIG 173 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~Plai~~~~ 173 (700)
..++.+..+++.++|.+..+....
T Consensus 198 ---id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 198 ---YEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred ---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 236788889999999765444433
No 160
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.62 E-value=0.048 Score=60.09 Aligned_cols=100 Identities=13% Similarity=0.168 Sum_probs=62.6
Q ss_pred cCcEEEEEcCCCch--hhhhhhcCc---CCCCcEEEEec-Cchhhhhccc-CcceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWER--VDLKKIGVP---LPKNSAVVFTT-RFVDVCGRME-ARRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~--~~~~~l~~~---~~~gs~iiiTT-r~~~~~~~~~-~~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
+++-++|+|+++.. .....++.- .+....+|++| ....+...+. ....+++..++.++..+.+.+.+...+..
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~ 196 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV 196 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 45668999998754 334443332 33355555544 4443333322 23679999999999998888877554422
Q ss_pred CCCChHHHHHHHHHHhCCCc-hHHHHHHHHh
Q 005367 147 SHHSIPELAQTVAKECGGLP-LALITIGRAM 176 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~P-lai~~~~~~l 176 (700)
..++....|++..+|-+ .|++.+-..+
T Consensus 197 ---i~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 197 ---VDDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred ---CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 23677888999999976 4555554433
No 161
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.58 E-value=0.00013 Score=69.15 Aligned_cols=78 Identities=22% Similarity=0.241 Sum_probs=38.1
Q ss_pred ccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCc--ccccccccceecc
Q 005367 328 EMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPM--GISKLVSLQLLDI 405 (700)
Q Consensus 328 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~--~~~~l~~L~~L~l 405 (700)
.++++|+..++.+.++.-..+++.|.+|.|+-|.|+.+.+ +..|+.|+.|.|+.| .+.++.+ .+.++++|+.|-+
T Consensus 19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhh
Confidence 3445555555555555544555555555555555554444 445555555555555 3333221 2334455555555
Q ss_pred ccC
Q 005367 406 SYT 408 (700)
Q Consensus 406 ~~~ 408 (700)
..|
T Consensus 96 ~EN 98 (388)
T KOG2123|consen 96 DEN 98 (388)
T ss_pred ccC
Confidence 444
No 162
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.55 E-value=0.0074 Score=53.43 Aligned_cols=81 Identities=22% Similarity=0.122 Sum_probs=44.6
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCc-EEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKK-FAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r-~Ll 79 (700)
++|+|||++|+.++... ......+++++.+........... ..... ... ...........+....+..+ .++
T Consensus 10 ~~G~GKTtl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 10 PPGSGKTTLARALAREL---GPPGGGVIYIDGEDILEEVLDQLL-LIIVG--GKK-ASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CCCCcHHHHHHHHHhcc---CCCCCCEEEECCEEccccCHHHHH-hhhhh--ccC-CCCCHHHHHHHHHHHHHhcCCCEE
Confidence 48999999999999998 333345677765544332222211 11111 111 12222233334444444444 999
Q ss_pred EEcCCCchh
Q 005367 80 LLDDLWERV 88 (700)
Q Consensus 80 VlDdv~~~~ 88 (700)
++|++....
T Consensus 83 iiDei~~~~ 91 (148)
T smart00382 83 ILDEITSLL 91 (148)
T ss_pred EEECCcccC
Confidence 999998774
No 163
>COG3899 Predicted ATPase [General function prediction only]
Probab=96.52 E-value=0.034 Score=64.56 Aligned_cols=205 Identities=15% Similarity=0.131 Sum_probs=120.0
Q ss_pred ccCcEEEEEcCCCchh--h---hhhhcCcCC--C--CcEEEEe--cCc--hhhhhcccCcceEeccCCChHhHHHHHHHH
Q 005367 73 SKKKFALLLDDLWERV--D---LKKIGVPLP--K--NSAVVFT--TRF--VDVCGRMEARRTFKVECLSDEAAWELFREK 139 (700)
Q Consensus 73 ~~~r~LlVlDdv~~~~--~---~~~l~~~~~--~--gs~iiiT--Tr~--~~~~~~~~~~~~~~l~~L~~~~a~~l~~~~ 139 (700)
++++..+|+||+.-.+ - ++.+....+ . ...|..+ .+. ..+.....+...+.+.||+..+...+....
T Consensus 152 ~~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~ 231 (849)
T COG3899 152 EEHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAAT 231 (849)
T ss_pred ccCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHH
Confidence 3468999999994221 1 222222111 1 1223322 221 223333345578999999999999999888
Q ss_pred hcccccCCCCChHHHHHHHHHHhCCCchHHHHHHHHhccC------CChHHHHHHHHHHHhhhhhccCcchhhccchhcc
Q 005367 140 VGEETIESHHSIPELAQTVAKECGGLPLALITIGRAMAYK------KTPEEWRYAIEVLRRSASEFADLGKEVYPLLKFS 213 (700)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~s 213 (700)
.+... ....+....|.++..|.|+-+..+-..+... .....|..-...... ......+...+..-
T Consensus 232 l~~~~----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~-----~~~~~~vv~~l~~r 302 (849)
T COG3899 232 LGCTK----LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI-----LATTDAVVEFLAAR 302 (849)
T ss_pred hCCcc----cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC-----chhhHHHHHHHHHH
Confidence 76533 3346888999999999999999998888663 234444443222211 11112345557788
Q ss_pred cCCCCccchhHHHhhhcCCCCCceeeHHHHHHHHHHcCCCCccccccchhhHHHHHHHHHhhhhccc-------ccC---
Q 005367 214 YDCLPNDAIRSCFLYCCLYPEDESIDKRDLIDCWICEGFLDEAKFGTQNQGYYIVGTLVHACLLEEV-------EED--- 283 (700)
Q Consensus 214 y~~L~~~~~~~~~l~~~~fp~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~~L~~~sli~~~-------~~~--- 283 (700)
.+.||. ..+..+-..+++-..++ .+.|...+. +.....+...++.|....++-.. ...
T Consensus 303 l~kL~~-~t~~Vl~~AA~iG~~F~--l~~La~l~~---------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~ 370 (849)
T COG3899 303 LQKLPG-TTREVLKAAACIGNRFD--LDTLAALAE---------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIAT 370 (849)
T ss_pred HhcCCH-HHHHHHHHHHHhCccCC--HHHHHHHHh---------hchHHHHHHHHHHhHhhceeccccccccccccchhh
Confidence 899998 89999988888876554 444444332 12234444555555555444211 111
Q ss_pred cEeehHHHHHHHHHH
Q 005367 284 QVKMHDVIRDMALWI 298 (700)
Q Consensus 284 ~~~~h~li~~~~~~~ 298 (700)
+-..|+.+|+.+...
T Consensus 371 Y~F~H~~vqqaaY~~ 385 (849)
T COG3899 371 YKFLHDRVQQAAYNL 385 (849)
T ss_pred HHhhHHHHHHHHhcc
Confidence 225677777766533
No 164
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.49 E-value=0.0016 Score=61.84 Aligned_cols=40 Identities=25% Similarity=0.378 Sum_probs=17.2
Q ss_pred CCCcceEEEccCC--cccccCCcccccccccceeccccCccc
Q 005367 372 SMPCLTVLKMSGN--ETLRQLPMGISKLVSLQLLDISYTRVR 411 (700)
Q Consensus 372 ~~~~L~~L~L~~~--~~~~~lp~~~~~l~~L~~L~l~~~~l~ 411 (700)
.+++|++|.++.| +....++..+..+++|++|++++|++.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 4444555555544 222333333333344444444444433
No 165
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.47 E-value=0.081 Score=59.08 Aligned_cols=98 Identities=12% Similarity=0.103 Sum_probs=62.1
Q ss_pred cCcEEEEEcCCCch--hhhhhhcCc---CCCCcEEEEecCc-hhhhhccc-CcceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWER--VDLKKIGVP---LPKNSAVVFTTRF-VDVCGRME-ARRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~--~~~~~l~~~---~~~gs~iiiTTr~-~~~~~~~~-~~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
.++-++|||+++.. +..+.+... .+....+|++|.+ ..+...+. ....+++..++.++....+.+.+...+..
T Consensus 119 ~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~ 198 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN 198 (585)
T ss_pred CCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 45679999999755 334444332 2335666665543 23322221 23578899999999998888887554422
Q ss_pred CCCChHHHHHHHHHHhCCCchHHHHHHH
Q 005367 147 SHHSIPELAQTVAKECGGLPLALITIGR 174 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~Plai~~~~~ 174 (700)
. .++.+..+++.++|.+..+...-.
T Consensus 199 i---~~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 199 L---EPGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred C---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2 367888999999998865544433
No 166
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.43 E-value=0.098 Score=57.67 Aligned_cols=93 Identities=14% Similarity=0.155 Sum_probs=59.5
Q ss_pred cCcEEEEEcCCCchh--hhhhhcCc---CCCCcEEEEecCc-hhhhhccc-CcceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWERV--DLKKIGVP---LPKNSAVVFTTRF-VDVCGRME-ARRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~~--~~~~l~~~---~~~gs~iiiTTr~-~~~~~~~~-~~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
+++-++|+|++.... +++.+... .++...+|.+|.+ ..+...+. .-..++..+++.++..+.+.+.+...+..
T Consensus 118 ~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~ 197 (563)
T PRK06647 118 SRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK 197 (563)
T ss_pred CCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 566689999997553 34444333 3335666555543 23322222 13468999999999998888877543322
Q ss_pred CCCChHHHHHHHHHHhCCCchHH
Q 005367 147 SHHSIPELAQTVAKECGGLPLAL 169 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~Plai 169 (700)
..++.+..|++.++|.+..+
T Consensus 198 ---id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 198 ---YEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred ---CCHHHHHHHHHHcCCCHHHH
Confidence 33788889999999977443
No 167
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.054 Score=55.95 Aligned_cols=69 Identities=14% Similarity=0.092 Sum_probs=49.3
Q ss_pred EEEecCchhhhhcc--c---CcceEeccCCChHhHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCCchHHHHHHHHhc
Q 005367 103 VVFTTRFVDVCGRM--E---ARRTFKVECLSDEAAWELFREKVGEETIESHHSIPELAQTVAKECGGLPLALITIGRAMA 177 (700)
Q Consensus 103 iiiTTr~~~~~~~~--~---~~~~~~l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~ 177 (700)
||.||..++-++.+ + .+..++++--+.+.-..|+.++.+... ...++.+|.+...+.-+.-..+|+.+=
T Consensus 341 ivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~------~h~L~~eie~l~~~~~~tPA~V~e~lm 414 (457)
T KOG0743|consen 341 IVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE------DHRLFDEIERLIEETEVTPAQVAEELM 414 (457)
T ss_pred EEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC------CcchhHHHHHHhhcCccCHHHHHHHHh
Confidence 55688877765432 2 356789999999999999999986532 256777787777777666666666653
No 168
>CHL00176 ftsH cell division protein; Validated
Probab=96.41 E-value=0.028 Score=62.77 Aligned_cols=138 Identities=14% Similarity=0.157 Sum_probs=76.8
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
++|+|||++|++++... ... |+.++. .++. .... ..........+........++|+
T Consensus 224 PpGTGKT~LAralA~e~---~~p-----~i~is~----s~f~----~~~~-------g~~~~~vr~lF~~A~~~~P~ILf 280 (638)
T CHL00176 224 PPGTGKTLLAKAIAGEA---EVP-----FFSISG----SEFV----EMFV-------GVGAARVRDLFKKAKENSPCIVF 280 (638)
T ss_pred CCCCCHHHHHHHHHHHh---CCC-----eeeccH----HHHH----HHhh-------hhhHHHHHHHHHHHhcCCCcEEE
Confidence 58999999999999876 222 222211 1111 1110 00112222233344456789999
Q ss_pred EcCCCchh----------------hhhhhcCc---CCC--CcEEEEecCchhhhhc-c----cCcceEeccCCChHhHHH
Q 005367 81 LDDLWERV----------------DLKKIGVP---LPK--NSAVVFTTRFVDVCGR-M----EARRTFKVECLSDEAAWE 134 (700)
Q Consensus 81 lDdv~~~~----------------~~~~l~~~---~~~--gs~iiiTTr~~~~~~~-~----~~~~~~~l~~L~~~~a~~ 134 (700)
||+++... .+..+... +.. +-.||.||...+..+. + +-+..+.++..+.++-.+
T Consensus 281 IDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~ 360 (638)
T CHL00176 281 IDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLD 360 (638)
T ss_pred EecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHH
Confidence 99996431 12222211 212 4556777776554332 1 224678999999999899
Q ss_pred HHHHHhcccccCCCCChHHHHHHHHHHhCCC
Q 005367 135 LFREKVGEETIESHHSIPELAQTVAKECGGL 165 (700)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 165 (700)
++..++.... .........+++.+.|.
T Consensus 361 IL~~~l~~~~----~~~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 361 ILKVHARNKK----LSPDVSLELIARRTPGF 387 (638)
T ss_pred HHHHHHhhcc----cchhHHHHHHHhcCCCC
Confidence 9988875422 11234566777777773
No 169
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.054 Score=56.71 Aligned_cols=136 Identities=21% Similarity=0.235 Sum_probs=78.4
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
++|+|||+||.+++... .|..+=-|+..+...+. .........+.+...-+..=-.+|
T Consensus 546 p~~sGKTaLAA~iA~~S-----~FPFvKiiSpe~miG~s-----------------EsaKc~~i~k~F~DAYkS~lsiiv 603 (744)
T KOG0741|consen 546 PPGSGKTALAAKIALSS-----DFPFVKIISPEDMIGLS-----------------ESAKCAHIKKIFEDAYKSPLSIIV 603 (744)
T ss_pred CCCCChHHHHHHHHhhc-----CCCeEEEeChHHccCcc-----------------HHHHHHHHHHHHHHhhcCcceEEE
Confidence 58999999999999885 67766555422211110 111111122222233345557999
Q ss_pred EcCCCchhhhhhhcCcC----------------CCCcEEEE--ecCchhhhhcccC----cceEeccCCCh-HhHHHHHH
Q 005367 81 LDDLWERVDLKKIGVPL----------------PKNSAVVF--TTRFVDVCGRMEA----RRTFKVECLSD-EAAWELFR 137 (700)
Q Consensus 81 lDdv~~~~~~~~l~~~~----------------~~gs~iii--TTr~~~~~~~~~~----~~~~~l~~L~~-~~a~~l~~ 137 (700)
+||+...-+|-.+.+.| |.|-|.+| ||-..+++..++- ...|.|+.++. ++..+.+.
T Consensus 604 vDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 604 VDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred EcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHH
Confidence 99998776655544332 22656444 6766777777642 46789999988 77777766
Q ss_pred HHhcccccCCCCChHHHHHHHHHHh
Q 005367 138 EKVGEETIESHHSIPELAQTVAKEC 162 (700)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~i~~~~ 162 (700)
..-. -.+...+..+.+...+|
T Consensus 684 ~~n~----fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 684 ELNI----FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred HccC----CCcchhHHHHHHHhccc
Confidence 5431 11223344555555544
No 170
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.037 Score=58.96 Aligned_cols=141 Identities=16% Similarity=0.213 Sum_probs=83.3
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
++|+|||-||+++++.. +-+ |+++..+ +++...- ..+..+....+++.-....+.|+
T Consensus 553 PPGCGKTLlAKAVANEa---g~N-----FisVKGP--------ELlNkYV-------GESErAVR~vFqRAR~saPCVIF 609 (802)
T KOG0733|consen 553 PPGCGKTLLAKAVANEA---GAN-----FISVKGP--------ELLNKYV-------GESERAVRQVFQRARASAPCVIF 609 (802)
T ss_pred CCCccHHHHHHHHhhhc---cCc-----eEeecCH--------HHHHHHh-------hhHHHHHHHHHHHhhcCCCeEEE
Confidence 68999999999999997 333 4555554 4444442 22233333333444346789999
Q ss_pred EcCCCch-------------hhhhhhcCcCC-----CCcEEEEecCchhhhhcc--c---CcceEeccCCChHhHHHHHH
Q 005367 81 LDDLWER-------------VDLKKIGVPLP-----KNSAVVFTTRFVDVCGRM--E---ARRTFKVECLSDEAAWELFR 137 (700)
Q Consensus 81 lDdv~~~-------------~~~~~l~~~~~-----~gs~iiiTTr~~~~~~~~--~---~~~~~~l~~L~~~~a~~l~~ 137 (700)
||.++.. ..+..++.-+. .|--||-.|..+++.+.. + -+....|+.-+.+|-..+++
T Consensus 610 FDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK 689 (802)
T KOG0733|consen 610 FDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILK 689 (802)
T ss_pred ecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHH
Confidence 9999644 11222222221 155677778777774332 2 25678888889999999988
Q ss_pred HHhc--ccccCCCCChHHHHHHHHHHhCCCc
Q 005367 138 EKVG--EETIESHHSIPELAQTVAKECGGLP 166 (700)
Q Consensus 138 ~~~~--~~~~~~~~~~~~~~~~i~~~~~g~P 166 (700)
..+- +.....+-.+++++.. .+|.|+-
T Consensus 690 ~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 690 TITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 8774 2222333334444432 3566664
No 171
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.28 E-value=0.046 Score=59.96 Aligned_cols=138 Identities=14% Similarity=0.127 Sum_probs=73.6
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
++|+|||++|++++... ...| +.++ ..++ ..... ..........+.......+.+|+
T Consensus 96 ppGtGKT~la~alA~~~---~~~~-----~~i~----~~~~----~~~~~-------g~~~~~l~~~f~~a~~~~p~Il~ 152 (495)
T TIGR01241 96 PPGTGKTLLAKAVAGEA---GVPF-----FSIS----GSDF----VEMFV-------GVGASRVRDLFEQAKKNAPCIIF 152 (495)
T ss_pred CCCCCHHHHHHHHHHHc---CCCe-----eecc----HHHH----HHHHh-------cccHHHHHHHHHHHHhcCCCEEE
Confidence 58999999999999886 2222 2211 1111 11110 01112222223333345678999
Q ss_pred EcCCCchh----------------hhhhhcCc---CCC--CcEEEEecCchhhhhc-c----cCcceEeccCCChHhHHH
Q 005367 81 LDDLWERV----------------DLKKIGVP---LPK--NSAVVFTTRFVDVCGR-M----EARRTFKVECLSDEAAWE 134 (700)
Q Consensus 81 lDdv~~~~----------------~~~~l~~~---~~~--gs~iiiTTr~~~~~~~-~----~~~~~~~l~~L~~~~a~~ 134 (700)
||+++... .+..+... +.. +-.||.||..++..+. + +-+..++++..+.++-.+
T Consensus 153 iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~ 232 (495)
T TIGR01241 153 IDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREE 232 (495)
T ss_pred EechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHH
Confidence 99996531 01112111 112 3456667766543221 1 234678999999988888
Q ss_pred HHHHHhcccccCCCCChHHHHHHHHHHhCCC
Q 005367 135 LFREKVGEETIESHHSIPELAQTVAKECGGL 165 (700)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 165 (700)
++..+....... .......+++.+.|.
T Consensus 233 il~~~l~~~~~~----~~~~l~~la~~t~G~ 259 (495)
T TIGR01241 233 ILKVHAKNKKLA----PDVDLKAVARRTPGF 259 (495)
T ss_pred HHHHHHhcCCCC----cchhHHHHHHhCCCC
Confidence 888777443211 123345777777764
No 172
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.25 E-value=0.036 Score=57.01 Aligned_cols=111 Identities=17% Similarity=0.209 Sum_probs=60.1
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHH--hccCcEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKT--LSKKKFA 78 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~--l~~~r~L 78 (700)
++|+|||++|+.+++.. .. .+..++... ..... ....+..+ ... +...+-+
T Consensus 51 ~~G~GKT~la~~l~~~~---~~---~~~~i~~~~-~~~~~-i~~~l~~~-------------------~~~~~~~~~~~v 103 (316)
T PHA02544 51 SPGTGKTTVAKALCNEV---GA---EVLFVNGSD-CRIDF-VRNRLTRF-------------------ASTVSLTGGGKV 103 (316)
T ss_pred cCCCCHHHHHHHHHHHh---Cc---cceEeccCc-ccHHH-HHHHHHHH-------------------HHhhcccCCCeE
Confidence 47999999999999875 21 223444433 22111 11111111 111 1134568
Q ss_pred EEEcCCCch---hh---hhhhcCcCCCCcEEEEecCchhhh-hcc-cCcceEeccCCChHhHHHHHHH
Q 005367 79 LLLDDLWER---VD---LKKIGVPLPKNSAVVFTTRFVDVC-GRM-EARRTFKVECLSDEAAWELFRE 138 (700)
Q Consensus 79 lVlDdv~~~---~~---~~~l~~~~~~gs~iiiTTr~~~~~-~~~-~~~~~~~l~~L~~~~a~~l~~~ 138 (700)
+|+|+++.. +. +..+....+.+.++|+||...... ..+ ..-..+.++..+.++..+++..
T Consensus 104 liiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 104 IIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 999999755 11 223333345578899888754321 111 1124677778888887766554
No 173
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.21 E-value=0.017 Score=50.40 Aligned_cols=117 Identities=20% Similarity=0.362 Sum_probs=40.8
Q ss_pred ccccccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCC-ccccccccc
Q 005367 324 VRGWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLP-MGISKLVSL 400 (700)
Q Consensus 324 ~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp-~~~~~l~~L 400 (700)
+..+++++.+.+.. .++.++ .|..+.+|+.+.+..+ +..+....|..++.|+.+.+.++ +..++ ..+..+++|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--ccccccccccccccc
Confidence 33444555555542 344444 3555555666665553 45555555555555666655442 22222 223445555
Q ss_pred ceeccccCcccccchh-hhcCCCCCEEecccccCccccchhhhcCCCcc
Q 005367 401 QLLDISYTRVRELPEE-LKALVNLRCLNLDWAGELVKVPQQLLSNFSRL 448 (700)
Q Consensus 401 ~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L 448 (700)
+.+.+..+ +..++.. +.++ +|+.+.+.. .+..++...+.++++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 55555443 3333222 3333 555555443 1233333334444443
No 174
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.19 E-value=0.15 Score=51.77 Aligned_cols=90 Identities=8% Similarity=0.000 Sum_probs=58.0
Q ss_pred cCcEEEEEcCCCchh--hhhhh---cCcCCCCcEEEEecCc-hhhhhcccC-cceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWERV--DLKKI---GVPLPKNSAVVFTTRF-VDVCGRMEA-RRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~~--~~~~l---~~~~~~gs~iiiTTr~-~~~~~~~~~-~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
+++-++|||+++... ....+ ..-.+++..+|++|.+ ..+...+.+ -..+.+.+++.+++.+.+... + ..
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~-~~-- 187 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQ-G-VS-- 187 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHc-C-CC--
Confidence 466799999998662 22233 2334457777776664 334433332 246889999999999888653 1 11
Q ss_pred CCCChHHHHHHHHHHhCCCchHHHHH
Q 005367 147 SHHSIPELAQTVAKECGGLPLALITI 172 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~Plai~~~ 172 (700)
++.+..++..++|.|.....+
T Consensus 188 -----~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 188 -----ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred -----hHHHHHHHHHcCCCHHHHHHH
Confidence 344678899999999765433
No 175
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.15 E-value=0.16 Score=56.68 Aligned_cols=96 Identities=19% Similarity=0.150 Sum_probs=58.2
Q ss_pred cCcEEEEEcCCCch--hhhhhhcCcC---CCCcEEEEecCc-hhhhhccc-CcceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWER--VDLKKIGVPL---PKNSAVVFTTRF-VDVCGRME-ARRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~--~~~~~l~~~~---~~gs~iiiTTr~-~~~~~~~~-~~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
+++-++|||+++.. +....+..-+ +....+|++|.+ ..+...+. .-..+++..++.++..+.+.+.+...+..
T Consensus 120 ~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~ 199 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE 199 (620)
T ss_pred CCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 45568999999865 3344443332 224545544443 33322222 12567888999999888887777543322
Q ss_pred CCCChHHHHHHHHHHhCCCchHHHHH
Q 005367 147 SHHSIPELAQTVAKECGGLPLALITI 172 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~Plai~~~ 172 (700)
. ..+.+..|++.++|.+..+..+
T Consensus 200 i---s~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 200 I---EPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred C---CHHHHHHHHHHcCCCHHHHHHH
Confidence 2 2577889999999977544433
No 176
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.15 E-value=0.045 Score=62.95 Aligned_cols=126 Identities=13% Similarity=0.215 Sum_probs=69.6
Q ss_pred CCCCcHHHHHHHHHhhcccCCC--CC-CEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhc-cCc
Q 005367 1 MGGVGKTTLLTQINNKFVDNPT--DF-DYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLS-KKK 76 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~--~f-~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~r 76 (700)
.+|+|||++|+.++++...... .+ +..+|.- +. ..+..... ..+..++.++.+.+.+. .++
T Consensus 211 ~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~----~~l~a~~~------~~g~~e~~l~~i~~~~~~~~~ 275 (731)
T TIGR02639 211 EPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DM----GSLLAGTK------YRGDFEERLKAVVSEIEKEPN 275 (731)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cH----HHHhhhcc------ccchHHHHHHHHHHHHhccCC
Confidence 4899999999999998722111 11 3344431 11 11111100 12345555665555553 467
Q ss_pred EEEEEcCCCchh-----------hhhhhcCcCCCCc-EEEEecCchhhhhc------c-cCcceEeccCCChHhHHHHHH
Q 005367 77 FALLLDDLWERV-----------DLKKIGVPLPKNS-AVVFTTRFVDVCGR------M-EARRTFKVECLSDEAAWELFR 137 (700)
Q Consensus 77 ~LlVlDdv~~~~-----------~~~~l~~~~~~gs-~iiiTTr~~~~~~~------~-~~~~~~~l~~L~~~~a~~l~~ 137 (700)
.+|++|+++..- .-+-++..+..|. ++|-+|...+.-.. + .....+++++++.++..+++.
T Consensus 276 ~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~ 355 (731)
T TIGR02639 276 AILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILK 355 (731)
T ss_pred eEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHH
Confidence 999999997331 1223333344443 44444443222111 1 123578999999999999998
Q ss_pred HHhc
Q 005367 138 EKVG 141 (700)
Q Consensus 138 ~~~~ 141 (700)
....
T Consensus 356 ~~~~ 359 (731)
T TIGR02639 356 GLKE 359 (731)
T ss_pred HHHH
Confidence 7653
No 177
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.13 E-value=0.00063 Score=64.73 Aligned_cols=95 Identities=24% Similarity=0.361 Sum_probs=75.6
Q ss_pred EEEcCCCCCCCCccccccccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccc-cccccCCCcceEEEccCCcccc
Q 005367 310 LVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIA-GGFFQSMPCLTVLKMSGNETLR 388 (700)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~ 388 (700)
+.+.|.++..| +-...|+.|+.|+++-|.++.+..+..|.+|..|.|..|.|.++. ...+.++|+|+.|.|..|+..+
T Consensus 24 LNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~ 102 (388)
T KOG2123|consen 24 LNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCG 102 (388)
T ss_pred hcccCCCccHH-HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCccc
Confidence 55677888877 667788999999999999999999999999999999999987763 3347899999999999997666
Q ss_pred cCCcc-----cccccccceecc
Q 005367 389 QLPMG-----ISKLVSLQLLDI 405 (700)
Q Consensus 389 ~lp~~-----~~~l~~L~~L~l 405 (700)
.-+.. +--+++|+.||=
T Consensus 103 ~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 103 EAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred ccchhHHHHHHHHcccchhccC
Confidence 54433 223556665553
No 178
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.11 E-value=0.17 Score=51.41 Aligned_cols=87 Identities=9% Similarity=0.050 Sum_probs=56.4
Q ss_pred cCcEEEEEcCCCchh--hhhhhc---CcCCCCcEEEEecCch-hhhhcccC-cceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWERV--DLKKIG---VPLPKNSAVVFTTRFV-DVCGRMEA-RRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~~--~~~~l~---~~~~~gs~iiiTTr~~-~~~~~~~~-~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
+++-++|+|+++... ....++ .-.|++..+|++|.+. .+...+.+ -..+.+.+++++++.+.+.......
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~~~--- 182 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSSAE--- 182 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhccC---
Confidence 566788899998662 333332 3334477777666654 34433332 2578999999999998887654211
Q ss_pred CCCChHHHHHHHHHHhCCCchH
Q 005367 147 SHHSIPELAQTVAKECGGLPLA 168 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~Pla 168 (700)
.+.+...++.++|.|..
T Consensus 183 -----~~~~~~~~~l~~g~p~~ 199 (325)
T PRK06871 183 -----ISEILTALRINYGRPLL 199 (325)
T ss_pred -----hHHHHHHHHHcCCCHHH
Confidence 23466778899999953
No 179
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.11 E-value=0.011 Score=55.36 Aligned_cols=104 Identities=20% Similarity=0.205 Sum_probs=55.4
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeC----Cc-----cCH----HHHHHHHHHHcCCCCCCCCCccHHHHHHH
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVS----KD-----LQL----EKIQETIRKKIGLCNDSWKNKSLEEKAQD 67 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~----~~-----~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 67 (700)
++|+|||.||.+.+-+. -..+.|+.++++.-. +. .+. ......+...+..-. .....+...+.
T Consensus 27 ~AGTGKT~LA~a~Al~~-v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~---~~~~~~~~~~~ 102 (205)
T PF02562_consen 27 PAGTGKTFLALAAALEL-VKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELF---GKEKLEELIQN 102 (205)
T ss_dssp -TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS----TTCHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHH-HHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHh---ChHhHHHHhhc
Confidence 58999999999998876 334889999888511 11 111 111222222222110 12223322221
Q ss_pred H------HHHhcc---CcEEEEEcCCCch--hhhhhhcCcCCCCcEEEEecC
Q 005367 68 I------FKTLSK---KKFALLLDDLWER--VDLKKIGVPLPKNSAVVFTTR 108 (700)
Q Consensus 68 l------~~~l~~---~r~LlVlDdv~~~--~~~~~l~~~~~~gs~iiiTTr 108 (700)
- ...+++ ....+|+|++.+. +++..+...++.||++|++--
T Consensus 103 ~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~g~~skii~~GD 154 (205)
T PF02562_consen 103 GKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRIGEGSKIIITGD 154 (205)
T ss_dssp TSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE-
T ss_pred CeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcccCCCcEEEEecC
Confidence 0 112344 3469999999766 688889889999999999875
No 180
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.08 E-value=0.029 Score=57.47 Aligned_cols=85 Identities=18% Similarity=0.235 Sum_probs=52.3
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCE-EEEEEeCCc-cCHHHHHHHHHHHcCCCCCCCCCcc---HHHHHHHHHHHh--c
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDY-VIWVVVSKD-LQLEKIQETIRKKIGLCNDSWKNKS---LEEKAQDIFKTL--S 73 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~-~~wv~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~l~~~l--~ 73 (700)
.+|+|||+|++++++... .++-+. ++|+-+.+. ..+.++.+.+...+..+........ .......+.+.+ +
T Consensus 141 ~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae~f~~~ 218 (380)
T PRK12608 141 PPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAKRLVEQ 218 (380)
T ss_pred CCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 379999999999998862 123344 366666665 4789999999887754331111111 111222223333 4
Q ss_pred cCcEEEEEcCCCch
Q 005367 74 KKKFALLLDDLWER 87 (700)
Q Consensus 74 ~~r~LlVlDdv~~~ 87 (700)
+++++||+|++...
T Consensus 219 GkdVVLvlDsltr~ 232 (380)
T PRK12608 219 GKDVVILLDSLTRL 232 (380)
T ss_pred CCCEEEEEeCcHHH
Confidence 78999999999544
No 181
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.07 E-value=0.014 Score=61.18 Aligned_cols=80 Identities=14% Similarity=0.100 Sum_probs=49.1
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHH-HHHHHHHHHh--ccCcE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLE-EKAQDIFKTL--SKKKF 77 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~l~~~l--~~~r~ 77 (700)
|+|+|||++|+++++.. .....++.+.||.+....+..+.+.-. ..... ...-.. ...+.+...- .++++
T Consensus 202 ppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~G~----rP~~v--gy~~~~G~f~~~~~~A~~~p~~~~ 274 (459)
T PRK11331 202 PPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQGY----RPNGV--GFRRKDGIFYNFCQQAKEQPEKKY 274 (459)
T ss_pred CCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhccc----CCCCC--CeEecCchHHHHHHHHHhcccCCc
Confidence 68999999999999987 444577889999988887776665322 11100 000000 1112222222 24689
Q ss_pred EEEEcCCCch
Q 005367 78 ALLLDDLWER 87 (700)
Q Consensus 78 LlVlDdv~~~ 87 (700)
+||||++...
T Consensus 275 vliIDEINRa 284 (459)
T PRK11331 275 VFIIDEINRA 284 (459)
T ss_pred EEEEehhhcc
Confidence 9999998644
No 182
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.00 E-value=0.056 Score=52.82 Aligned_cols=155 Identities=14% Similarity=0.169 Sum_probs=86.7
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCC-EEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh--ccCc-
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFD-YVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTL--SKKK- 76 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~~r- 76 (700)
++|+|||+-|++++... .-.+.|. .++=.+++...... +... ...+..........-. ..+.
T Consensus 65 PpGTGKTStalafar~L-~~~~~~~~rvl~lnaSderGis-vvr~------------Kik~fakl~~~~~~~~~~~~~~f 130 (346)
T KOG0989|consen 65 PPGTGKTSTALAFARAL-NCEQLFPCRVLELNASDERGIS-VVRE------------KIKNFAKLTVLLKRSDGYPCPPF 130 (346)
T ss_pred CCCCcHhHHHHHHHHHh-cCccccccchhhhccccccccc-chhh------------hhcCHHHHhhccccccCCCCCcc
Confidence 68999999999998886 2234453 33434444443322 0000 0001111111000000 0123
Q ss_pred EEEEEcCCCch--hhhhhhcCc---CCCCcEEEEecCchhhh-hcccC-cceEeccCCChHhHHHHHHHHhcccccCCCC
Q 005367 77 FALLLDDLWER--VDLKKIGVP---LPKNSAVVFTTRFVDVC-GRMEA-RRTFKVECLSDEAAWELFREKVGEETIESHH 149 (700)
Q Consensus 77 ~LlVlDdv~~~--~~~~~l~~~---~~~gs~iiiTTr~~~~~-~~~~~-~~~~~l~~L~~~~a~~l~~~~~~~~~~~~~~ 149 (700)
-.+|||+++.. +.|..+..- ++...+.|..+...+.. ..+.+ -..|..++|.+++...-+...+..+++..+
T Consensus 131 KiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d- 209 (346)
T KOG0989|consen 131 KIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDID- 209 (346)
T ss_pred eEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC-
Confidence 48999999877 456665443 44455655444332221 11111 146889999999999999988876654444
Q ss_pred ChHHHHHHHHHHhCCC-chHHHHH
Q 005367 150 SIPELAQTVAKECGGL-PLALITI 172 (700)
Q Consensus 150 ~~~~~~~~i~~~~~g~-Plai~~~ 172 (700)
.+..+.|++.++|- --|+.++
T Consensus 210 --~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 210 --DDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred --HHHHHHHHHHcCCcHHHHHHHH
Confidence 78899999999884 4555443
No 183
>PRK12377 putative replication protein; Provisional
Probab=95.94 E-value=0.014 Score=56.99 Aligned_cols=88 Identities=22% Similarity=0.203 Sum_probs=48.1
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
.+|+|||.||.++++.. ......+.++++. +++..+-..... .....+ +.+.+ .+--|||
T Consensus 109 ~~GtGKThLa~AIa~~l---~~~g~~v~~i~~~------~l~~~l~~~~~~------~~~~~~----~l~~l-~~~dLLi 168 (248)
T PRK12377 109 KPGTGKNHLAAAIGNRL---LAKGRSVIVVTVP------DVMSRLHESYDN------GQSGEK----FLQEL-CKVDLLV 168 (248)
T ss_pred CCCCCHHHHHHHHHHHH---HHcCCCeEEEEHH------HHHHHHHHHHhc------cchHHH----HHHHh-cCCCEEE
Confidence 36999999999999997 3333445666543 344444433321 111122 22222 3556999
Q ss_pred EcCCCch----hhhhhhcCc----CCCCcEEEEecC
Q 005367 81 LDDLWER----VDLKKIGVP----LPKNSAVVFTTR 108 (700)
Q Consensus 81 lDdv~~~----~~~~~l~~~----~~~gs~iiiTTr 108 (700)
|||+... .+.+.+... ....-.+||||.
T Consensus 169 IDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSN 204 (248)
T PRK12377 169 LDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTN 204 (248)
T ss_pred EcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999332 222222222 222456888887
No 184
>PRK08181 transposase; Validated
Probab=95.91 E-value=0.011 Score=58.32 Aligned_cols=88 Identities=18% Similarity=0.154 Sum_probs=46.9
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
++|+|||.||.++++.. ......++|+.+ .+++..+.... .....+...+. +. +-=|||
T Consensus 114 p~GtGKTHLa~Aia~~a---~~~g~~v~f~~~------~~L~~~l~~a~-------~~~~~~~~l~~----l~-~~dLLI 172 (269)
T PRK08181 114 PPGGGKSHLAAAIGLAL---IENGWRVLFTRT------TDLVQKLQVAR-------RELQLESAIAK----LD-KFDLLI 172 (269)
T ss_pred cCCCcHHHHHHHHHHHH---HHcCCceeeeeH------HHHHHHHHHHH-------hCCcHHHHHHH----Hh-cCCEEE
Confidence 47999999999999876 233345566653 34444443322 11222222222 22 334999
Q ss_pred EcCCCch----hhhhhhcCcC---CCCcEEEEecCc
Q 005367 81 LDDLWER----VDLKKIGVPL---PKNSAVVFTTRF 109 (700)
Q Consensus 81 lDdv~~~----~~~~~l~~~~---~~gs~iiiTTr~ 109 (700)
|||+... ...+.+...+ ..+..+||||+.
T Consensus 173 IDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~ 208 (269)
T PRK08181 173 LDDLAYVTKDQAETSVLFELISARYERRSILITANQ 208 (269)
T ss_pred EeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 9999533 1111222211 114568999874
No 185
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.88 E-value=0.013 Score=51.33 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=15.9
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+|||++|+.+++..
T Consensus 6 ~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 6 PPGTGKTTLARALAQYL 22 (132)
T ss_dssp STTSSHHHHHHHHHHHT
T ss_pred cCCCCeeHHHHHHHhhc
Confidence 48999999999999997
No 186
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.88 E-value=0.00083 Score=61.10 Aligned_cols=69 Identities=17% Similarity=0.323 Sum_probs=41.9
Q ss_pred CcCccccccEEEEeccccccceeecccccccccCCccccCCccEEeeecCcCccc--ccccccCCCCceEEeeeccccc
Q 005367 522 GLADLEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKH--LTFLVFAPNLKSISVCLCDDME 598 (700)
Q Consensus 522 ~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~l~~l~~L~~L~l~~~~~l~ 598 (700)
.+.+++.+++|.+.+|..+.+..+..+. ...++|+.|+|++|+.+++ +.++..+++|+.|.|.+.+.+.
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~--------~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLG--------GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhc--------ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhh
Confidence 3445566666777777766665555555 2456666666666666655 3456666666666666554433
No 187
>PRK06921 hypothetical protein; Provisional
Probab=95.86 E-value=0.0095 Score=59.08 Aligned_cols=28 Identities=32% Similarity=0.330 Sum_probs=21.1
Q ss_pred CCCcHHHHHHHHHhhcccCCCC-CCEEEEEEe
Q 005367 2 GGVGKTTLLTQINNKFVDNPTD-FDYVIWVVV 32 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~-f~~~~wv~~ 32 (700)
+|+|||.||.++++.. .+. ...++++.+
T Consensus 126 ~G~GKThLa~aia~~l---~~~~g~~v~y~~~ 154 (266)
T PRK06921 126 PGSGKTHLLTAAANEL---MRKKGVPVLYFPF 154 (266)
T ss_pred CCCcHHHHHHHHHHHH---hhhcCceEEEEEH
Confidence 7999999999999987 322 455667764
No 188
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.83 E-value=0.019 Score=54.73 Aligned_cols=166 Identities=16% Similarity=0.116 Sum_probs=106.6
Q ss_pred ccccceeeeeccccccC-----CC-CCCCCCceeEEEecCCCCc---c-c------ccccccCCCcceEEEccCCccccc
Q 005367 326 GWEMGRRLSLMKNSIKN-----LP-TIPTCPHLLTLFLNRNPLT---T-I------AGGFFQSMPCLTVLKMSGNETLRQ 389 (700)
Q Consensus 326 ~~~~l~~l~l~~~~~~~-----l~-~~~~~~~L~~L~l~~~~~~---~-~------~~~~~~~~~~L~~L~L~~~~~~~~ 389 (700)
.+..+..+++++|.+.. +. .+.+-.+|+..+++.--.. . + ....+-+||+|+..+||+|-....
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 35678888999988752 11 4566788888887754211 1 1 112245899999999999933333
Q ss_pred CCcc----cccccccceeccccCccccc-----c---------hhhhcCCCCCEEecccccCccccchh----hhcCCCc
Q 005367 390 LPMG----ISKLVSLQLLDISYTRVREL-----P---------EELKALVNLRCLNLDWAGELVKVPQQ----LLSNFSR 447 (700)
Q Consensus 390 lp~~----~~~l~~L~~L~l~~~~l~~l-----p---------~~~~~l~~L~~L~l~~~~~~~~~p~~----~~~~l~~ 447 (700)
.|+. ++.-..|.+|.+.+|.+.-+ . +....-+.|+......|. +.+.+.. .+.....
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR-lengs~~~~a~~l~sh~~ 186 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR-LENGSKELSAALLESHEN 186 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch-hccCcHHHHHHHHHhhcC
Confidence 4433 56678899999999876522 2 112356788888877763 4444432 2334468
Q ss_pred cceeeccccCcccccCcccchHHHHhcCCCcceEEEEEecchhhHh
Q 005367 448 LRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEITFRRFEAYQT 493 (700)
Q Consensus 448 L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 493 (700)
|+.+.+..|.+..-.. ..-....+..+.+|+.|++..|.++...+
T Consensus 187 lk~vki~qNgIrpegv-~~L~~~gl~y~~~LevLDlqDNtft~~gS 231 (388)
T COG5238 187 LKEVKIQQNGIRPEGV-TMLAFLGLFYSHSLEVLDLQDNTFTLEGS 231 (388)
T ss_pred ceeEEeeecCcCcchh-HHHHHHHHHHhCcceeeeccccchhhhhH
Confidence 8999999887743211 01123456788999999999998876554
No 189
>PRK04296 thymidine kinase; Provisional
Probab=95.79 E-value=0.01 Score=55.77 Aligned_cols=104 Identities=15% Similarity=0.025 Sum_probs=59.8
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEEE
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALLL 81 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVl 81 (700)
.|.||||+|..++.+. ......++.+. ..++.+.....++++++...+.......++....+.+ ..++.-+||+
T Consensus 11 ~GsGKTT~~l~~~~~~---~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~~dvviI 84 (190)
T PRK04296 11 MNSGKSTELLQRAYNY---EERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGEKIDCVLI 84 (190)
T ss_pred CCCHHHHHHHHHHHHH---HHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCCCCCEEEE
Confidence 5999999999999997 33334444442 1112222244456666543322122344555555555 2334459999
Q ss_pred cCCCch--hhhhhhcCc-CCCCcEEEEecCchh
Q 005367 82 DDLWER--VDLKKIGVP-LPKNSAVVFTTRFVD 111 (700)
Q Consensus 82 Ddv~~~--~~~~~l~~~-~~~gs~iiiTTr~~~ 111 (700)
|.+.-. +++.++... -+.|-.||+|.++.+
T Consensus 85 DEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 85 DEAQFLDKEQVVQLAEVLDDLGIPVICYGLDTD 117 (190)
T ss_pred EccccCCHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 998543 334444333 344889999998743
No 190
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.79 E-value=0.3 Score=54.08 Aligned_cols=92 Identities=15% Similarity=0.123 Sum_probs=57.1
Q ss_pred cCcEEEEEcCCCch--hhhhhhcCc---CCCCcEEEEec-Cchhhhhccc-CcceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWER--VDLKKIGVP---LPKNSAVVFTT-RFVDVCGRME-ARRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~--~~~~~l~~~---~~~gs~iiiTT-r~~~~~~~~~-~~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
+++-++|+|+++.. ..+..+..- .+....+|++| ....+...+. .-..++..+++.++..+.+...+...+..
T Consensus 118 ~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~ 197 (559)
T PRK05563 118 AKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIE 197 (559)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCC
Confidence 46678899999755 334444332 23355555444 4333322221 23568899999999999888877544322
Q ss_pred CCCChHHHHHHHHHHhCCCchH
Q 005367 147 SHHSIPELAQTVAKECGGLPLA 168 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~Pla 168 (700)
. .++.+..|++.++|-+..
T Consensus 198 i---~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 198 Y---EDEALRLIARAAEGGMRD 216 (559)
T ss_pred C---CHHHHHHHHHHcCCCHHH
Confidence 2 267788899999887643
No 191
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.74 E-value=0.15 Score=56.69 Aligned_cols=97 Identities=14% Similarity=0.115 Sum_probs=60.5
Q ss_pred cCcEEEEEcCCCchh--hhhhhcC---cCCCCcEEEEec-Cchhhhhccc-CcceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWERV--DLKKIGV---PLPKNSAVVFTT-RFVDVCGRME-ARRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~~--~~~~l~~---~~~~gs~iiiTT-r~~~~~~~~~-~~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
+++-++|||+++... ....+.. -.++...+|++| ....+...+. .-..+++..++.++....+...+...+..
T Consensus 118 ~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~ 197 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS 197 (576)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 455689999997552 3333332 234466665544 4444433322 23578899999999988888776544422
Q ss_pred CCCChHHHHHHHHHHhCCCc-hHHHHHH
Q 005367 147 SHHSIPELAQTVAKECGGLP-LALITIG 173 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~P-lai~~~~ 173 (700)
. .++....|++.++|.. .|+..+-
T Consensus 198 i---~~~al~~la~~a~G~lr~al~~Ld 222 (576)
T PRK14965 198 I---SDAALALVARKGDGSMRDSLSTLD 222 (576)
T ss_pred C---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2 3788889999999865 5555543
No 192
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.11 Score=48.91 Aligned_cols=136 Identities=14% Similarity=0.175 Sum_probs=76.9
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTL-SKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~Ll 79 (700)
++|.|||-||++++++. ..-||.++.. ++.+.+-... ..++.++.-.- +...-++
T Consensus 189 ppgtGktLlaraVahht--------~c~firvsgs--------elvqk~igeg--------srmvrelfvmarehapsii 244 (404)
T KOG0728|consen 189 PPGTGKTLLARAVAHHT--------DCTFIRVSGS--------ELVQKYIGEG--------SRMVRELFVMAREHAPSII 244 (404)
T ss_pred CCCCchhHHHHHHHhhc--------ceEEEEechH--------HHHHHHhhhh--------HHHHHHHHHHHHhcCCceE
Confidence 58999999999999997 3445556543 3333332111 12222222222 2456788
Q ss_pred EEcCCCch-------------hh----hhhh--cCcCCC--CcEEEEecCchhhhhcc-----cCcceEeccCCChHhHH
Q 005367 80 LLDDLWER-------------VD----LKKI--GVPLPK--NSAVVFTTRFVDVCGRM-----EARRTFKVECLSDEAAW 133 (700)
Q Consensus 80 VlDdv~~~-------------~~----~~~l--~~~~~~--gs~iiiTTr~~~~~~~~-----~~~~~~~l~~L~~~~a~ 133 (700)
+.|.+++. +. ++-+ ...|.. +-+||..|...++++.. +.++.++.++-+++.-.
T Consensus 245 fmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~ 324 (404)
T KOG0728|consen 245 FMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARL 324 (404)
T ss_pred eeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHH
Confidence 88888644 10 1111 123333 77888888777775442 23567888888877777
Q ss_pred HHHHHHhcccccCCCCChHHHHHHHHH
Q 005367 134 ELFREKVGEETIESHHSIPELAQTVAK 160 (700)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~i~~ 160 (700)
+.++-+.-.-+.....+++.++.++..
T Consensus 325 ~ilkihsrkmnl~rgi~l~kiaekm~g 351 (404)
T KOG0728|consen 325 DILKIHSRKMNLTRGINLRKIAEKMPG 351 (404)
T ss_pred HHHHHhhhhhchhcccCHHHHHHhCCC
Confidence 777665533333333445555554443
No 193
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.70 E-value=0.0099 Score=55.03 Aligned_cols=86 Identities=22% Similarity=0.243 Sum_probs=44.2
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
.+|+|||.||.++++.. ..+-..+.|+++ .+++..+-... ......... +.+. +-=|||
T Consensus 55 ~~G~GKThLa~ai~~~~---~~~g~~v~f~~~------~~L~~~l~~~~-------~~~~~~~~~----~~l~-~~dlLi 113 (178)
T PF01695_consen 55 PPGTGKTHLAVAIANEA---IRKGYSVLFITA------SDLLDELKQSR-------SDGSYEELL----KRLK-RVDLLI 113 (178)
T ss_dssp STTSSHHHHHHHHHHHH---HHTT--EEEEEH------HHHHHHHHCCH-------CCTTHCHHH----HHHH-TSSCEE
T ss_pred hHhHHHHHHHHHHHHHh---ccCCcceeEeec------Cceeccccccc-------cccchhhhc----Cccc-cccEec
Confidence 37999999999999887 223344566653 33444443221 122222222 2232 234888
Q ss_pred EcCCCchh--hh--hhhcCc----CCCCcEEEEecC
Q 005367 81 LDDLWERV--DL--KKIGVP----LPKNSAVVFTTR 108 (700)
Q Consensus 81 lDdv~~~~--~~--~~l~~~----~~~gs~iiiTTr 108 (700)
|||+-... +| +.+... .. ...+||||.
T Consensus 114 lDDlG~~~~~~~~~~~l~~ii~~R~~-~~~tIiTSN 148 (178)
T PF01695_consen 114 LDDLGYEPLSEWEAELLFEIIDERYE-RKPTIITSN 148 (178)
T ss_dssp EETCTSS---HHHHHCTHHHHHHHHH-T-EEEEEES
T ss_pred ccccceeeecccccccchhhhhHhhc-ccCeEeeCC
Confidence 99995441 11 111111 12 346888987
No 194
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.70 E-value=0.023 Score=50.92 Aligned_cols=106 Identities=15% Similarity=0.125 Sum_probs=53.5
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcC-C-----CC-CCCCCccHH-------HHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIG-L-----CN-DSWKNKSLE-------EKAQD 67 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~-~-----~~-~~~~~~~~~-------~~~~~ 67 (700)
.|.|||++|...+.+......+--.+-|+.......-.. +++++. . .. ......+.+ +..+.
T Consensus 11 ~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~----~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~~~~~ 86 (159)
T cd00561 11 NGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELK----ALERLPNIEIHRMGRGFFWTTENDEEDIAAAAEGWAF 86 (159)
T ss_pred CCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHH----HHHhCCCcEEEECCCCCccCCCChHHHHHHHHHHHHH
Confidence 599999999999998722221222222344322222222 333331 0 00 000001111 12222
Q ss_pred HHHHhccCc-EEEEEcCCCch--------hhhhhhcCcCCCCcEEEEecCchh
Q 005367 68 IFKTLSKKK-FALLLDDLWER--------VDLKKIGVPLPKNSAVVFTTRFVD 111 (700)
Q Consensus 68 l~~~l~~~r-~LlVlDdv~~~--------~~~~~l~~~~~~gs~iiiTTr~~~ 111 (700)
.++.+.... =|+|||++--. +++-++...-|++..+|+|.|+..
T Consensus 87 a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 87 AKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 333444433 59999998533 344444455566889999999733
No 195
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.12 Score=55.34 Aligned_cols=64 Identities=19% Similarity=0.227 Sum_probs=38.0
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
++|+|||.||++++... . +=++.++-+ +|...+ ...+.+.....+.+.-....++++
T Consensus 231 PPGCGKT~lA~AiAgel---~-----vPf~~isAp--------eivSGv-------SGESEkkiRelF~~A~~~aPcivF 287 (802)
T KOG0733|consen 231 PPGCGKTSLANAIAGEL---G-----VPFLSISAP--------EIVSGV-------SGESEKKIRELFDQAKSNAPCIVF 287 (802)
T ss_pred CCCccHHHHHHHHhhhc---C-----CceEeecch--------hhhccc-------CcccHHHHHHHHHHHhccCCeEEE
Confidence 68999999999999997 2 223332222 222222 122233333333444456889999
Q ss_pred EcCCCch
Q 005367 81 LDDLWER 87 (700)
Q Consensus 81 lDdv~~~ 87 (700)
||+++-.
T Consensus 288 iDeIDAI 294 (802)
T KOG0733|consen 288 IDEIDAI 294 (802)
T ss_pred eeccccc
Confidence 9999643
No 196
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.65 E-value=0.11 Score=60.58 Aligned_cols=149 Identities=11% Similarity=0.108 Sum_probs=79.1
Q ss_pred CCCCcHHHHHHHHHhhcccCCC---CCCEEEE-EEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhc--c
Q 005367 1 MGGVGKTTLLTQINNKFVDNPT---DFDYVIW-VVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLS--K 74 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~---~f~~~~w-v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~ 74 (700)
.+|+|||++|+.++++...... -....+| ++.+.- ... ....+.+++.++.+..... +
T Consensus 216 ~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l-------------~ag---~~~~ge~e~~lk~ii~e~~~~~ 279 (852)
T TIGR03345 216 EAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL-------------QAG---ASVKGEFENRLKSVIDEVKASP 279 (852)
T ss_pred CCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh-------------hcc---cccchHHHHHHHHHHHHHHhcC
Confidence 4899999999999998721110 1123333 222110 000 0023334444444444332 4
Q ss_pred CcEEEEEcCCCchh-------hhh---hhcCcCCCC-cEEEEecCchhhhhcc-------cCcceEeccCCChHhHHHHH
Q 005367 75 KKFALLLDDLWERV-------DLK---KIGVPLPKN-SAVVFTTRFVDVCGRM-------EARRTFKVECLSDEAAWELF 136 (700)
Q Consensus 75 ~r~LlVlDdv~~~~-------~~~---~l~~~~~~g-s~iiiTTr~~~~~~~~-------~~~~~~~l~~L~~~~a~~l~ 136 (700)
++.+|++|++.... ..+ -+++.+..| -++|-||...+.-..+ .....+.+++++.+++.+++
T Consensus 280 ~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL 359 (852)
T TIGR03345 280 QPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRML 359 (852)
T ss_pred CCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHH
Confidence 68999999986541 122 234444445 4455555543221111 12358999999999999997
Q ss_pred HHHhccccc-CCCCChHHHHHHHHHHhCCC
Q 005367 137 REKVGEETI-ESHHSIPELAQTVAKECGGL 165 (700)
Q Consensus 137 ~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~ 165 (700)
......... ..-...++....+++.+.+.
T Consensus 360 ~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 360 RGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred HHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 544422110 01122367777888877654
No 197
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=95.64 E-value=0.029 Score=56.39 Aligned_cols=132 Identities=18% Similarity=0.176 Sum_probs=81.2
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCC-CCCCCc----cHHHHHHHHHH--Hhcc
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCN-DSWKNK----SLEEKAQDIFK--TLSK 74 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~----~~~~~~~~l~~--~l~~ 74 (700)
+|+|||.+.+++++.. . ...+|+++-+-++...+...|+.+.+..+ +..... ...+.+..+.+ ...+
T Consensus 39 sgTGKT~~~r~~l~~~---n---~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~ 112 (438)
T KOG2543|consen 39 SGTGKTYLVRQLLRKL---N---LENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATN 112 (438)
T ss_pred CCCchhHHHHHHHhhc---C---CcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhc
Confidence 6999999999999986 2 24589999999999999999999996322 111111 11223333333 2223
Q ss_pred --CcEEEEEcCCCchhhhhhhcC--------cCCCCcEEEEecCc---hhhhhcccC--cceEeccCCChHhHHHHHHHH
Q 005367 75 --KKFALLLDDLWERVDLKKIGV--------PLPKNSAVVFTTRF---VDVCGRMEA--RRTFKVECLSDEAAWELFREK 139 (700)
Q Consensus 75 --~r~LlVlDdv~~~~~~~~l~~--------~~~~gs~iiiTTr~---~~~~~~~~~--~~~~~l~~L~~~~a~~l~~~~ 139 (700)
+.+.||+||++...+.+.... ..+...-+|+++-. +.-....+. ...+..+..+.+|..+++.+-
T Consensus 113 ~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 113 RDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred cCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 479999999987766544321 12224444444431 111111222 345678888999988888644
No 198
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.12 Score=56.67 Aligned_cols=114 Identities=15% Similarity=0.069 Sum_probs=67.9
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
++|+|||-+|++|+-.. ..-|+++..+ +++...- ..+.+.+.+.+.+.-.-+.|.|+
T Consensus 713 PPGTGKTLlAKAVATEc--------sL~FlSVKGP--------ELLNMYV-------GqSE~NVR~VFerAR~A~PCVIF 769 (953)
T KOG0736|consen 713 PPGTGKTLLAKAVATEC--------SLNFLSVKGP--------ELLNMYV-------GQSEENVREVFERARSAAPCVIF 769 (953)
T ss_pred CCCCchHHHHHHHHhhc--------eeeEEeecCH--------HHHHHHh-------cchHHHHHHHHHHhhccCCeEEE
Confidence 58999999999999998 5567777666 4444442 22333333333333344889999
Q ss_pred EcCCCchh-----------hhh----hhc---CcCCC----CcEEEEecCchhhhhcc--c---CcceEeccCCChHhHH
Q 005367 81 LDDLWERV-----------DLK----KIG---VPLPK----NSAVVFTTRFVDVCGRM--E---ARRTFKVECLSDEAAW 133 (700)
Q Consensus 81 lDdv~~~~-----------~~~----~l~---~~~~~----gs~iiiTTr~~~~~~~~--~---~~~~~~l~~L~~~~a~ 133 (700)
||.+++.. ..| .++ ..+.. +-=||=.|..+++.+.. + -+.-+.|++=+++++.
T Consensus 770 FDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk 849 (953)
T KOG0736|consen 770 FDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESK 849 (953)
T ss_pred eccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHH
Confidence 99997651 111 111 11221 22244466667775432 2 3567888888888775
Q ss_pred HHHH
Q 005367 134 ELFR 137 (700)
Q Consensus 134 ~l~~ 137 (700)
.-..
T Consensus 850 ~~vL 853 (953)
T KOG0736|consen 850 LRVL 853 (953)
T ss_pred HHHH
Confidence 5433
No 199
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.62 E-value=0.029 Score=53.98 Aligned_cols=29 Identities=28% Similarity=0.441 Sum_probs=24.6
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEe
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVV 32 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~ 32 (700)
..|.|||+++..+.... .+.|+.++++.-
T Consensus 21 ~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 21 KSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred CCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 37999999999999887 778888888753
No 200
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.12 Score=50.80 Aligned_cols=125 Identities=17% Similarity=0.203 Sum_probs=68.1
Q ss_pred CCCCcHHHHHHHHHhhccc-CCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCc--E
Q 005367 1 MGGVGKTTLLTQINNKFVD-NPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKK--F 77 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r--~ 77 (700)
+||+|||+|.+++|+...- ..+.|....-|.+..+.=+.+ .++. ..+....+-++|.+..+.+. +
T Consensus 185 PPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSK-------WFsE-----SgKlV~kmF~kI~ELv~d~~~lV 252 (423)
T KOG0744|consen 185 PPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSK-------WFSE-----SGKLVAKMFQKIQELVEDRGNLV 252 (423)
T ss_pred CCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHH-------HHhh-----hhhHHHHHHHHHHHHHhCCCcEE
Confidence 6999999999999999732 223444444444433321111 2221 23344555566666666555 4
Q ss_pred EEEEcCCCch------------------------hhhhhhcCcCCCCcEEEEecCc-hhhhhc-c--cCcceEeccCCCh
Q 005367 78 ALLLDDLWER------------------------VDLKKIGVPLPKNSAVVFTTRF-VDVCGR-M--EARRTFKVECLSD 129 (700)
Q Consensus 78 LlVlDdv~~~------------------------~~~~~l~~~~~~gs~iiiTTr~-~~~~~~-~--~~~~~~~l~~L~~ 129 (700)
.+.+|.|... .|+|.++.. ...+|.||-+ .+..+- + +.+....+++-+.
T Consensus 253 fvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~---~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~ 329 (423)
T KOG0744|consen 253 FVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRY---PNVLILATSNLTDSIDVAFVDRADIVFYVGPPTA 329 (423)
T ss_pred EEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccC---CCEEEEeccchHHHHHHHhhhHhhheeecCCccH
Confidence 5677888544 223333322 4555666543 111111 1 2245677888887
Q ss_pred HhHHHHHHHHh
Q 005367 130 EAAWELFREKV 140 (700)
Q Consensus 130 ~~a~~l~~~~~ 140 (700)
+.-.++++.+.
T Consensus 330 ~ai~~Ilksci 340 (423)
T KOG0744|consen 330 EAIYEILKSCI 340 (423)
T ss_pred HHHHHHHHHHH
Confidence 77777776554
No 201
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.50 E-value=0.014 Score=59.66 Aligned_cols=29 Identities=28% Similarity=0.249 Sum_probs=21.6
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEe
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVV 32 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~ 32 (700)
.+|+|||.||.++++.. ......|+++++
T Consensus 191 ~~GtGKThLa~aIa~~l---~~~g~~V~y~t~ 219 (329)
T PRK06835 191 NTGTGKTFLSNCIAKEL---LDRGKSVIYRTA 219 (329)
T ss_pred CCCCcHHHHHHHHHHHH---HHCCCeEEEEEH
Confidence 36999999999999987 233345666764
No 202
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.17 Score=55.13 Aligned_cols=138 Identities=14% Similarity=0.116 Sum_probs=82.2
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
++|+|||.||.+++... ..-+|++..+ +++.+.-. .+.+...+.+.+.-.-+.|+++
T Consensus 709 ppGcGKT~la~a~a~~~--------~~~fisvKGP--------ElL~KyIG-------aSEq~vR~lF~rA~~a~PCiLF 765 (952)
T KOG0735|consen 709 PPGCGKTLLASAIASNS--------NLRFISVKGP--------ELLSKYIG-------ASEQNVRDLFERAQSAKPCILF 765 (952)
T ss_pred CCCCcHHHHHHHHHhhC--------CeeEEEecCH--------HHHHHHhc-------ccHHHHHHHHHHhhccCCeEEE
Confidence 58999999999999998 4567777776 55555522 2233333333333345899999
Q ss_pred EcCCCch-------------hhhhhhcCcCCC-----CcEEEE-ecCchhhhhc--cc---CcceEeccCCChHhHHHHH
Q 005367 81 LDDLWER-------------VDLKKIGVPLPK-----NSAVVF-TTRFVDVCGR--ME---ARRTFKVECLSDEAAWELF 136 (700)
Q Consensus 81 lDdv~~~-------------~~~~~l~~~~~~-----gs~iii-TTr~~~~~~~--~~---~~~~~~l~~L~~~~a~~l~ 136 (700)
||..++. ..+..+...+.. |--|+. ||| +++.+. .+ -++.+.-+.-++.|-.+.+
T Consensus 766 FDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsR-pdliDpALLRpGRlD~~v~C~~P~~~eRl~il 844 (952)
T KOG0735|consen 766 FDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSR-PDLIDPALLRPGRLDKLVYCPLPDEPERLEIL 844 (952)
T ss_pred eccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCC-ccccCHhhcCCCccceeeeCCCCCcHHHHHHH
Confidence 9998755 113333222222 444444 556 444222 12 2456677777778888888
Q ss_pred HHHhcccccCCCCChHHHHHHHHHHhCCCc
Q 005367 137 REKVGEETIESHHSIPELAQTVAKECGGLP 166 (700)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 166 (700)
...+..-. -......+.++.+.+|.-
T Consensus 845 ~~ls~s~~----~~~~vdl~~~a~~T~g~t 870 (952)
T KOG0735|consen 845 QVLSNSLL----KDTDVDLECLAQKTDGFT 870 (952)
T ss_pred HHHhhccC----CccccchHHHhhhcCCCc
Confidence 77664322 111344566777777765
No 203
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.46 E-value=0.12 Score=59.64 Aligned_cols=138 Identities=19% Similarity=0.209 Sum_probs=75.4
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTL-SKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~Ll 79 (700)
++|+|||++|++++... ...| +.+. .+ +++... ... .+..+..+...- .....+|
T Consensus 495 ppGtGKT~lakalA~e~---~~~f---i~v~--~~--------~l~~~~-------vGe-se~~i~~~f~~A~~~~p~ii 550 (733)
T TIGR01243 495 PPGTGKTLLAKAVATES---GANF---IAVR--GP--------EILSKW-------VGE-SEKAIREIFRKARQAAPAII 550 (733)
T ss_pred CCCCCHHHHHHHHHHhc---CCCE---EEEe--hH--------HHhhcc-------cCc-HHHHHHHHHHHHHhcCCEEE
Confidence 58999999999999987 3222 2222 11 122221 111 122333333333 3467999
Q ss_pred EEcCCCchh--------------hhhhhcCc---CCC--CcEEEEecCchhhhhcc-----cCcceEeccCCChHhHHHH
Q 005367 80 LLDDLWERV--------------DLKKIGVP---LPK--NSAVVFTTRFVDVCGRM-----EARRTFKVECLSDEAAWEL 135 (700)
Q Consensus 80 VlDdv~~~~--------------~~~~l~~~---~~~--gs~iiiTTr~~~~~~~~-----~~~~~~~l~~L~~~~a~~l 135 (700)
+||+++... .+..+... +.. +-.||.||..++..+.. +-+..+.++..+.++-.++
T Consensus 551 fiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i 630 (733)
T TIGR01243 551 FFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEI 630 (733)
T ss_pred EEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHH
Confidence 999986431 11112111 111 44466677666554321 2256789999999988888
Q ss_pred HHHHhcccccCCCCChHHHHHHHHHHhCCCc
Q 005367 136 FREKVGEETIESHHSIPELAQTVAKECGGLP 166 (700)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 166 (700)
|..+......... .....+++.+.|.-
T Consensus 631 ~~~~~~~~~~~~~----~~l~~la~~t~g~s 657 (733)
T TIGR01243 631 FKIHTRSMPLAED----VDLEELAEMTEGYT 657 (733)
T ss_pred HHHHhcCCCCCcc----CCHHHHHHHcCCCC
Confidence 8766643321211 22456777777654
No 204
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.44 E-value=0.13 Score=55.44 Aligned_cols=141 Identities=17% Similarity=0.106 Sum_probs=74.2
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
++|+|||.+|++++... .-.| +-++.+ .+.... ...+...+.+.+...-...+++|+
T Consensus 267 PpGTGKTllAkaiA~e~---~~~~---~~l~~~----------~l~~~~-------vGese~~l~~~f~~A~~~~P~IL~ 323 (489)
T CHL00195 267 IQGTGKSLTAKAIANDW---QLPL---LRLDVG----------KLFGGI-------VGESESRMRQMIRIAEALSPCILW 323 (489)
T ss_pred CCCCcHHHHHHHHHHHh---CCCE---EEEEhH----------Hhcccc-------cChHHHHHHHHHHHHHhcCCcEEE
Confidence 58999999999999997 3222 222211 111111 111111222222222234789999
Q ss_pred EcCCCchhh--------------hhhhcCcC---CCCcEEEEecCchhhhhc-c----cCcceEeccCCChHhHHHHHHH
Q 005367 81 LDDLWERVD--------------LKKIGVPL---PKNSAVVFTTRFVDVCGR-M----EARRTFKVECLSDEAAWELFRE 138 (700)
Q Consensus 81 lDdv~~~~~--------------~~~l~~~~---~~gs~iiiTTr~~~~~~~-~----~~~~~~~l~~L~~~~a~~l~~~ 138 (700)
||+++.... +..+...+ ..+--||.||.+.+.... + +-+..+.++.-+.++-.++|..
T Consensus 324 IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~ 403 (489)
T CHL00195 324 IDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKI 403 (489)
T ss_pred ehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHH
Confidence 999974310 11111111 113345668876554221 1 2356789999999999999988
Q ss_pred HhcccccCCCCChHHHHHHHHHHhCCCc
Q 005367 139 KVGEETIESHHSIPELAQTVAKECGGLP 166 (700)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~i~~~~~g~P 166 (700)
+........ ........+++...|+-
T Consensus 404 ~l~~~~~~~--~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 404 HLQKFRPKS--WKKYDIKKLSKLSNKFS 429 (489)
T ss_pred HHhhcCCCc--ccccCHHHHHhhcCCCC
Confidence 875533111 11233566777766654
No 205
>PRK08118 topology modulation protein; Reviewed
Probab=95.42 E-value=0.029 Score=51.42 Aligned_cols=29 Identities=34% Similarity=0.599 Sum_probs=23.1
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIW 29 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~w 29 (700)
++|+||||||++++....-..-++|.++|
T Consensus 9 ~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 9 SGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred CCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999997222356788887
No 206
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.36 E-value=0.081 Score=48.12 Aligned_cols=34 Identities=29% Similarity=0.406 Sum_probs=26.2
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccC
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQ 37 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~ 37 (700)
.+|+|||++|.+++... ...-..++|++......
T Consensus 7 ~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 7 PTGSGKTTLALQLALNI---ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CCCCCHHHHHHHHHHHH---HhcCCEEEEEECCcchH
Confidence 47999999999999987 33456788888765543
No 207
>PRK06526 transposase; Provisional
Probab=95.30 E-value=0.023 Score=55.79 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+|||.||.+++...
T Consensus 106 p~GtGKThLa~al~~~a 122 (254)
T PRK06526 106 PPGTGKTHLAIGLGIRA 122 (254)
T ss_pred CCCCchHHHHHHHHHHH
Confidence 48999999999998876
No 208
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.25 E-value=0.033 Score=56.39 Aligned_cols=86 Identities=22% Similarity=0.286 Sum_probs=49.9
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEEE
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALLL 81 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVl 81 (700)
.|+|||.||.++++.. ...-..+.++++ .+++..+...+. ..+..+.++. + .+-=||||
T Consensus 165 ~G~GKThLa~Aia~~l---~~~g~~v~~~~~------~~l~~~lk~~~~-------~~~~~~~l~~----l-~~~dlLiI 223 (306)
T PRK08939 165 FGVGKSYLLAAIANEL---AKKGVSSTLLHF------PEFIRELKNSIS-------DGSVKEKIDA----V-KEAPVLML 223 (306)
T ss_pred CCCCHHHHHHHHHHHH---HHcCCCEEEEEH------HHHHHHHHHHHh-------cCcHHHHHHH----h-cCCCEEEE
Confidence 6999999999999998 333334556654 245555555542 1122222222 2 24558999
Q ss_pred cCCCch--hhhh--hhcCc-----CCCCcEEEEecC
Q 005367 82 DDLWER--VDLK--KIGVP-----LPKNSAVVFTTR 108 (700)
Q Consensus 82 Ddv~~~--~~~~--~l~~~-----~~~gs~iiiTTr 108 (700)
||+--. .+|. .+... ...+..+|+||.
T Consensus 224 DDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 224 DDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred ecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 999533 2332 23222 223677899987
No 209
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.24 E-value=0.032 Score=54.34 Aligned_cols=88 Identities=19% Similarity=0.239 Sum_probs=48.8
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEEE
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALLL 81 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVl 81 (700)
+|+|||.||.++++.. ......+++++ ..++...+-..+.. .....++ +.+.+. +-=+|||
T Consensus 108 ~GtGKThLa~aia~~l---~~~g~~v~~it------~~~l~~~l~~~~~~-----~~~~~~~----~l~~l~-~~dlLvI 168 (244)
T PRK07952 108 PGTGKNHLAAAICNEL---LLRGKSVLIIT------VADIMSAMKDTFSN-----SETSEEQ----LLNDLS-NVDLLVI 168 (244)
T ss_pred CCCCHHHHHHHHHHHH---HhcCCeEEEEE------HHHHHHHHHHHHhh-----ccccHHH----HHHHhc-cCCEEEE
Confidence 7999999999999987 33344566664 34444444444321 1112222 333344 3448888
Q ss_pred cCCCch--hhhhh--hcCc----CCCCcEEEEecC
Q 005367 82 DDLWER--VDLKK--IGVP----LPKNSAVVFTTR 108 (700)
Q Consensus 82 Ddv~~~--~~~~~--l~~~----~~~gs~iiiTTr 108 (700)
||+... .+|+. +... ......+||||.
T Consensus 169 DDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSN 203 (244)
T PRK07952 169 DEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTN 203 (244)
T ss_pred eCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCC
Confidence 999544 22331 1111 222566888887
No 210
>PRK07261 topology modulation protein; Provisional
Probab=95.24 E-value=0.043 Score=50.54 Aligned_cols=61 Identities=20% Similarity=0.372 Sum_probs=37.0
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
++|+||||||++++....-..-+.|.+.|-.. ....+.++....+...+.+.+ .|
T Consensus 8 ~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~--wI 62 (171)
T PRK07261 8 YSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN-----------------------WQERDDDDMIADISNFLLKHD--WI 62 (171)
T ss_pred CCCCCHHHHHHHHHHHhCCCeEecCCEEeccc-----------------------cccCCHHHHHHHHHHHHhCCC--EE
Confidence 58999999999998876111124455555211 012234455566666666666 67
Q ss_pred EcCCCc
Q 005367 81 LDDLWE 86 (700)
Q Consensus 81 lDdv~~ 86 (700)
+|+.-.
T Consensus 63 idg~~~ 68 (171)
T PRK07261 63 IDGNYS 68 (171)
T ss_pred EcCcch
Confidence 888743
No 211
>PRK10536 hypothetical protein; Provisional
Probab=95.23 E-value=0.057 Score=52.32 Aligned_cols=38 Identities=16% Similarity=0.248 Sum_probs=29.4
Q ss_pred hccCc---EEEEEcCCCch--hhhhhhcCcCCCCcEEEEecCc
Q 005367 72 LSKKK---FALLLDDLWER--VDLKKIGVPLPKNSAVVFTTRF 109 (700)
Q Consensus 72 l~~~r---~LlVlDdv~~~--~~~~~l~~~~~~gs~iiiTTr~ 109 (700)
++++. -++|+|.+.+. .+...+...++.++++|+|--.
T Consensus 170 mRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~g~~sk~v~~GD~ 212 (262)
T PRK10536 170 MRGRTFENAVVILDEAQNVTAAQMKMFLTRLGENVTVIVNGDI 212 (262)
T ss_pred hcCCcccCCEEEEechhcCCHHHHHHHHhhcCCCCEEEEeCCh
Confidence 45544 49999999876 5677777888899999998753
No 212
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=95.17 E-value=0.51 Score=48.61 Aligned_cols=65 Identities=8% Similarity=0.057 Sum_probs=40.9
Q ss_pred cCcEEEEEcCCCchh--hhhhhc---CcCCCCcEEEEecCchh-hhhcccC-cceEeccCCChHhHHHHHHH
Q 005367 74 KKKFALLLDDLWERV--DLKKIG---VPLPKNSAVVFTTRFVD-VCGRMEA-RRTFKVECLSDEAAWELFRE 138 (700)
Q Consensus 74 ~~r~LlVlDdv~~~~--~~~~l~---~~~~~gs~iiiTTr~~~-~~~~~~~-~~~~~l~~L~~~~a~~l~~~ 138 (700)
+++-++|+|+++... ....+. .-.|++..+|.+|.+.. +...+.+ -..+++.++++++..+.+..
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 456689999987652 233332 33444777776665433 3333322 35789999999999888764
No 213
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.14 E-value=0.23 Score=49.31 Aligned_cols=17 Identities=41% Similarity=0.511 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
.+|+|||++|++++...
T Consensus 29 ~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 29 PAGTGKTTLAMHVARKR 45 (262)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 48999999999999754
No 214
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.05 E-value=0.038 Score=51.66 Aligned_cols=17 Identities=35% Similarity=0.630 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
.+|+|||+|+++++++.
T Consensus 32 ~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 32 ESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -TTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999999998
No 215
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.94 E-value=0.28 Score=56.00 Aligned_cols=125 Identities=18% Similarity=0.258 Sum_probs=67.7
Q ss_pred CCCCcHHHHHHHHHhhcccCCCC---CCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhc-cCc
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTD---FDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLS-KKK 76 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~---f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~r 76 (700)
.+|+|||++|+.++++....... .+..+|.. +...+ .. +.. ..+..+...+.+...++ .+.
T Consensus 215 ppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la--G~~----~~Ge~e~rl~~l~~~l~~~~~ 279 (758)
T PRK11034 215 ESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA--GTK----YRGDFEKRFKALLKQLEQDTN 279 (758)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc--ccc----hhhhHHHHHHHHHHHHHhcCC
Confidence 47999999999999875222111 24444431 11111 10 000 12344555555544443 456
Q ss_pred EEEEEcCCCch----------hhhhh-hcCcCCCCcE-EEEecCchhhhhcc-------cCcceEeccCCChHhHHHHHH
Q 005367 77 FALLLDDLWER----------VDLKK-IGVPLPKNSA-VVFTTRFVDVCGRM-------EARRTFKVECLSDEAAWELFR 137 (700)
Q Consensus 77 ~LlVlDdv~~~----------~~~~~-l~~~~~~gs~-iiiTTr~~~~~~~~-------~~~~~~~l~~L~~~~a~~l~~ 137 (700)
.+|+||++... .+... ++..+..|.. +|-+|...+..+.+ +....+++++.+.+++.+++.
T Consensus 280 ~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~ 359 (758)
T PRK11034 280 SILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIIN 359 (758)
T ss_pred CEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHH
Confidence 89999999643 12222 2333333433 44444433321111 123579999999999999998
Q ss_pred HHh
Q 005367 138 EKV 140 (700)
Q Consensus 138 ~~~ 140 (700)
...
T Consensus 360 ~~~ 362 (758)
T PRK11034 360 GLK 362 (758)
T ss_pred HHH
Confidence 665
No 216
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.88 E-value=0.047 Score=49.97 Aligned_cols=119 Identities=13% Similarity=0.261 Sum_probs=61.5
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhcc--CcEEE
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSK--KKFAL 79 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~r~Ll 79 (700)
+|.|||++|.+++... ...++++.-....+. ++.+.|.+........+... +....+.+.+.+ +.-.+
T Consensus 8 ~~sGKS~~a~~~~~~~------~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~---E~~~~l~~~l~~~~~~~~V 77 (169)
T cd00544 8 ARSGKSRFAERLAAEL------GGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTI---ETPRDLVSALKELDPGDVV 77 (169)
T ss_pred CCCCHHHHHHHHHHhc------CCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEe---ecHHHHHHHHHhcCCCCEE
Confidence 6999999999998762 236666665555544 24444333222112222222 222333333321 23479
Q ss_pred EEcCCCch-----------------hhhhhhcCcCCC-CcEEEEecCchhhhhcccCcceEeccCCChHhHHHHHHHHhc
Q 005367 80 LLDDLWER-----------------VDLKKIGVPLPK-NSAVVFTTRFVDVCGRMEARRTFKVECLSDEAAWELFREKVG 141 (700)
Q Consensus 80 VlDdv~~~-----------------~~~~~l~~~~~~-gs~iiiTTr~~~~~~~~~~~~~~~l~~L~~~~a~~l~~~~~~ 141 (700)
++|.+..- ..+..+...+.. +..+|++|.+ +-.+....+..-+.|....+
T Consensus 78 LIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~~~~~~viVsnE------------vG~g~vp~~~~~r~f~d~lG 145 (169)
T cd00544 78 LIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRNKPGTLILVSNE------------VGLGVVPENALGRRFRDELG 145 (169)
T ss_pred EEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHcCCCcEEEEECC------------cCCCCCCCCHHHHHHHHHHH
Confidence 99987321 112223333322 6667777762 22445556666777777765
Q ss_pred c
Q 005367 142 E 142 (700)
Q Consensus 142 ~ 142 (700)
.
T Consensus 146 ~ 146 (169)
T cd00544 146 R 146 (169)
T ss_pred H
Confidence 4
No 217
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.88 E-value=0.079 Score=58.83 Aligned_cols=53 Identities=9% Similarity=0.178 Sum_probs=32.2
Q ss_pred ceEeccCCChHhHHHHHHHHhcccccCCCC----ChHHHHHHHHHHhCC-CchHHHHH
Q 005367 120 RTFKVECLSDEAAWELFREKVGEETIESHH----SIPELAQTVAKECGG-LPLALITI 172 (700)
Q Consensus 120 ~~~~l~~L~~~~a~~l~~~~~~~~~~~~~~----~~~~~~~~i~~~~~g-~Plai~~~ 172 (700)
..++.++++..+-.+.+.+.+..+...... ...+....|+..++| .-.||..+
T Consensus 267 ~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GDiRsAIn~L 324 (637)
T TIGR00602 267 SNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGDIRSAINSL 324 (637)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCChHHHHHHHH
Confidence 458999999999888777777443211111 124666677666666 44454444
No 218
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.81 E-value=0.21 Score=52.83 Aligned_cols=63 Identities=16% Similarity=0.105 Sum_probs=45.4
Q ss_pred CcEEEEEcCCCchhhhhhhcCcCCC-Cc-EEEEecCchhhhhc------ccCcceEeccCCChHhHHHHHH
Q 005367 75 KKFALLLDDLWERVDLKKIGVPLPK-NS-AVVFTTRFVDVCGR------MEARRTFKVECLSDEAAWELFR 137 (700)
Q Consensus 75 ~r~LlVlDdv~~~~~~~~l~~~~~~-gs-~iiiTTr~~~~~~~------~~~~~~~~l~~L~~~~a~~l~~ 137 (700)
++.+++||.|.....|+.....+-. |- +|+||+-+...... .+....+++-||+-.|-..+..
T Consensus 94 ~~~yifLDEIq~v~~W~~~lk~l~d~~~~~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~ 164 (398)
T COG1373 94 EKSYIFLDEIQNVPDWERALKYLYDRGNLDVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKG 164 (398)
T ss_pred CCceEEEecccCchhHHHHHHHHHccccceEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhcc
Confidence 7789999999999998887666544 22 68888766554321 1335678999999988776543
No 219
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=94.78 E-value=0.5 Score=48.61 Aligned_cols=87 Identities=13% Similarity=0.052 Sum_probs=56.1
Q ss_pred cCcEEEEEcCCCchh--hhhhhcC---cCCCCcEEEEecCchh-hhhcccC-cceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWERV--DLKKIGV---PLPKNSAVVFTTRFVD-VCGRMEA-RRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~~--~~~~l~~---~~~~gs~iiiTTr~~~-~~~~~~~-~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
+++-.+|+|+++... ....+++ --|++..+|.+|.+.+ +...+.+ -..+.+.+++++++.+.+.+..+ .
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~-~--- 182 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREVT-M--- 182 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHccC-C---
Confidence 567799999998663 3333323 2344666666665533 4444322 24689999999999988865421 1
Q ss_pred CCCChHHHHHHHHHHhCCCchH
Q 005367 147 SHHSIPELAQTVAKECGGLPLA 168 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~Pla 168 (700)
..+.+..+++.++|.|..
T Consensus 183 ----~~~~a~~~~~la~G~~~~ 200 (334)
T PRK07993 183 ----SQDALLAALRLSAGAPGA 200 (334)
T ss_pred ----CHHHHHHHHHHcCCCHHH
Confidence 144577889999999954
No 220
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=94.67 E-value=0.13 Score=50.78 Aligned_cols=49 Identities=22% Similarity=0.290 Sum_probs=34.3
Q ss_pred CCCCcHHHHHHHHHhhcc---cCCCCCCEEEEEEeCCccCHHHHHHHHHHHcC
Q 005367 1 MGGVGKTTLLTQINNKFV---DNPTDFDYVIWVVVSKDLQLEKIQETIRKKIG 50 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~---~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~ 50 (700)
.+|+|||+|+.+++-... ...+.-..++||+-...++.+.+. +|+++++
T Consensus 46 ~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 46 ESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp STTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred ecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 479999999999876541 112334679999988888877765 4666654
No 221
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=94.64 E-value=1.2 Score=45.20 Aligned_cols=105 Identities=11% Similarity=0.037 Sum_probs=62.7
Q ss_pred cCcEEEEEcCCCchh--hhhhhcC---cCCCCcEEEEecCc-hhhhhcccCc-ceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWERV--DLKKIGV---PLPKNSAVVFTTRF-VDVCGRMEAR-RTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~~--~~~~l~~---~~~~gs~iiiTTr~-~~~~~~~~~~-~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
+++-.+|+|+++... ....+.+ -.|++..+|.+|.+ ..+...+.+. ..+.+.+++++++.+.+.... .
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~---~-- 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG---I-- 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC---C--
Confidence 455689999998662 3333333 33446666666554 3444444332 478999999999999886431 0
Q ss_pred CCCChHHHHHHHHHHhCCCchHHHHHHHHhccCCChHHHHHHHHHHH
Q 005367 147 SHHSIPELAQTVAKECGGLPLALITIGRAMAYKKTPEEWRYAIEVLR 193 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~~~~~l~~~~ 193 (700)
. ....+++.++|.|.....+. . ....+.++..++.+.
T Consensus 182 -~-----~~~~~l~l~~G~p~~A~~~~---~-~~~~~~~~~~~~~l~ 218 (319)
T PRK06090 182 -T-----VPAYALKLNMGSPLKTLAMM---K-EGGLEKYHKLERQLV 218 (319)
T ss_pred -c-----hHHHHHHHcCCCHHHHHHHh---C-CCcHHHHHHHHHHHH
Confidence 0 23567899999998654332 2 233444444444443
No 222
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=94.63 E-value=0.078 Score=51.46 Aligned_cols=36 Identities=25% Similarity=0.301 Sum_probs=27.5
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHH
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEK 40 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 40 (700)
.+|+|||++|.+++... ......++||+.. ..+.+.
T Consensus 31 ~~GsGKT~l~~~la~~~---~~~~~~v~yi~~e-~~~~~r 66 (225)
T PRK09361 31 PPGSGKTNICLQLAVEA---AKNGKKVIYIDTE-GLSPER 66 (225)
T ss_pred CCCCCHHHHHHHHHHHH---HHCCCeEEEEECC-CCCHHH
Confidence 48999999999999887 3345788999877 444443
No 223
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=94.63 E-value=1 Score=45.85 Aligned_cols=91 Identities=13% Similarity=0.067 Sum_probs=55.9
Q ss_pred cCcEEEEEcCCCchh--hhhhhc---CcCCCCcEEEEecCch-hhhhcccC-cceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWERV--DLKKIG---VPLPKNSAVVFTTRFV-DVCGRMEA-RRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~~--~~~~l~---~~~~~gs~iiiTTr~~-~~~~~~~~-~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
+++-++|+|+++... ....+. .-.| ...+|++|.+. .+...+.+ -..+++.++++++..+.+.+......
T Consensus 123 ~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~-- 199 (314)
T PRK07399 123 APRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI-- 199 (314)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc--
Confidence 567799999997663 233332 2233 45555555443 33333322 35789999999999999987643211
Q ss_pred CCCChHHHHHHHHHHhCCCchHHHH
Q 005367 147 SHHSIPELAQTVAKECGGLPLALIT 171 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~Plai~~ 171 (700)
.......++..++|.|.....
T Consensus 200 ----~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 200 ----LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred ----chhHHHHHHHHcCCCHHHHHH
Confidence 112246889999999965433
No 224
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.59 E-value=0.26 Score=57.59 Aligned_cols=148 Identities=16% Similarity=0.184 Sum_probs=79.4
Q ss_pred CCCCcHHHHHHHHHhhcccCCC--C-CCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhc-cCc
Q 005367 1 MGGVGKTTLLTQINNKFVDNPT--D-FDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLS-KKK 76 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~--~-f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~r 76 (700)
.+|+|||++|+.++++...... . -+..+|.- +...+ .. +.. -.+.+++.++.+.+.+. .++
T Consensus 208 ~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l-----~~~~l----~a--g~~----~~ge~e~rl~~i~~~~~~~~~ 272 (821)
T CHL00095 208 EPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL-----DIGLL----LA--GTK----YRGEFEERLKRIFDEIQENNN 272 (821)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe-----eHHHH----hc--cCC----CccHHHHHHHHHHHHHHhcCC
Confidence 4899999999999998722111 1 13445431 11111 11 111 23445556665555544 467
Q ss_pred EEEEEcCCCchh---------h-hhhhcCcCCCC-cEEEEecCchhhhhc------c-cCcceEeccCCChHhHHHHHHH
Q 005367 77 FALLLDDLWERV---------D-LKKIGVPLPKN-SAVVFTTRFVDVCGR------M-EARRTFKVECLSDEAAWELFRE 138 (700)
Q Consensus 77 ~LlVlDdv~~~~---------~-~~~l~~~~~~g-s~iiiTTr~~~~~~~------~-~~~~~~~l~~L~~~~a~~l~~~ 138 (700)
.+|+||++.... + -.-+++.+..| -++|.+|...+..+. + .....++++..+.++...++..
T Consensus 273 ~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 273 IILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred eEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 999999995331 1 12233333333 556656655443221 1 2235688999999998888765
Q ss_pred Hhcc--cccCCCCChHHHHHHHHHHhCC
Q 005367 139 KVGE--ETIESHHSIPELAQTVAKECGG 164 (700)
Q Consensus 139 ~~~~--~~~~~~~~~~~~~~~i~~~~~g 164 (700)
.... .-.... ..++....+++.+++
T Consensus 353 l~~~~e~~~~v~-i~deal~~i~~ls~~ 379 (821)
T CHL00095 353 LRSRYEKHHNLS-ISDKALEAAAKLSDQ 379 (821)
T ss_pred HHHHHHHHcCCC-CCHHHHHHHHHHhhc
Confidence 4311 100111 235667777777654
No 225
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=94.59 E-value=0.59 Score=44.89 Aligned_cols=16 Identities=31% Similarity=0.708 Sum_probs=15.0
Q ss_pred CCCcHHHHHHHHHhhc
Q 005367 2 GGVGKTTLLTQINNKF 17 (700)
Q Consensus 2 gGiGKT~La~~~~~~~ 17 (700)
.|+|||++++++...+
T Consensus 61 rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 61 RGTGKSSLVKALLNEY 76 (249)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 6999999999999998
No 226
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=94.53 E-value=2.3 Score=44.43 Aligned_cols=249 Identities=16% Similarity=0.172 Sum_probs=137.8
Q ss_pred CCCCcHHHHH-HHHHhhcccCCCCCCEEEEEEeCC---ccCHHHHHHHHHHHcCCCC---------------------CC
Q 005367 1 MGGVGKTTLL-TQINNKFVDNPTDFDYVIWVVVSK---DLQLEKIQETIRKKIGLCN---------------------DS 55 (700)
Q Consensus 1 ~gGiGKT~La-~~~~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~~~~~~---------------------~~ 55 (700)
|-|.||+.|+ .++.++. + .+..|++.. ..+-..+++.++.++++-+ ..
T Consensus 25 PrGSGK~elV~d~~L~~r---~----~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~PvFsw~nSiss~IDLa~qGltGqK 97 (431)
T PF10443_consen 25 PRGSGKRELVMDHVLKDR---K----NVLVIDCDQIVKARGDAAFIKNLASQVGYFPVFSWMNSISSFIDLAVQGLTGQK 97 (431)
T ss_pred CCCCCccHHHHHHHHhCC---C----CEEEEEChHhhhccChHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhhccccc
Confidence 4699999999 6676664 2 277777554 2345667777777776422 11
Q ss_pred C-CCccHHHHHHHHHHH---------------------------h---ccCcEEEEEcCCCchh-----------hhhhh
Q 005367 56 W-KNKSLEEKAQDIFKT---------------------------L---SKKKFALLLDDLWERV-----------DLKKI 93 (700)
Q Consensus 56 ~-~~~~~~~~~~~l~~~---------------------------l---~~~r~LlVlDdv~~~~-----------~~~~l 93 (700)
. -..+.+...+.+.+. | ..+|=++||||..... +|...
T Consensus 98 aGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVIdnF~~k~~~~~~iy~~laeWAa~ 177 (431)
T PF10443_consen 98 AGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVIDNFLHKAEENDFIYDKLAEWAAS 177 (431)
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEEcchhccCcccchHHHHHHHHHHH
Confidence 0 112233222222211 1 1135689999995442 23322
Q ss_pred cCcCCCCcEEEEecCchhhhhc----c--cCcceEeccCCChHhHHHHHHHHhcccccC-------------C----CCC
Q 005367 94 GVPLPKNSAVVFTTRFVDVCGR----M--EARRTFKVECLSDEAAWELFREKVGEETIE-------------S----HHS 150 (700)
Q Consensus 94 ~~~~~~gs~iiiTTr~~~~~~~----~--~~~~~~~l~~L~~~~a~~l~~~~~~~~~~~-------------~----~~~ 150 (700)
... ..=-+||++|-+....+. + ...+.+.++..+++-|.++...+....... . .+.
T Consensus 178 Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (431)
T PF10443_consen 178 LVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEK 256 (431)
T ss_pred HHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhccccccccccccccccccccccccccc
Confidence 111 113557777766554433 3 234678999999999999999998543100 0 124
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHhccCCChHHHHHHHHHHHhhhhhccCcchhhccchhcccC-CC-----CccchhH
Q 005367 151 IPELAQTVAKECGGLPLALITIGRAMAYKKTPEEWRYAIEVLRRSASEFADLGKEVYPLLKFSYD-CL-----PNDAIRS 224 (700)
Q Consensus 151 ~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~sy~-~L-----~~~~~~~ 224 (700)
..+..+..++.+||==.-+..+++.++...++.. .++.+-.. ++..+.+..+. +- .+....+
T Consensus 257 ~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~---Av~~iI~q---------sa~eI~k~fl~~~~~~~~~~~Wt~~Q 324 (431)
T PF10443_consen 257 DLAELDECIEPLGGRLTDLEFLVRRIKSGESPEE---AVEEIISQ---------SASEIRKMFLLDDSDDAKSLKWTREQ 324 (431)
T ss_pred chHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHH---HHHHHHHH---------HHHHHHHHHhcCCCCcccCCCCCHHH
Confidence 5677788889999999999999999977654333 22232221 11111111111 00 1112333
Q ss_pred HHhhhcCCCCCceeeHHHHHHHHHHcCCCCccccccchhhHHHHHHHHHhhhhccc
Q 005367 225 CFLYCCLYPEDESIDKRDLIDCWICEGFLDEAKFGTQNQGYYIVGTLVHACLLEEV 280 (700)
Q Consensus 225 ~~l~~~~fp~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~~L~~~sli~~~ 280 (700)
.+..+-.+.+...+++.+++..-. ++ ...+..+..|....||...
T Consensus 325 aW~LIk~Ls~~~~v~Y~~ll~~~l----Fk-------~~~E~~L~aLe~aeLItv~ 369 (431)
T PF10443_consen 325 AWYLIKLLSKNDEVPYNELLLSPL----FK-------GNDETALRALEQAELITVT 369 (431)
T ss_pred HHHHHHHhccCCcCcHHHHHcccc----cC-------CCChHHHHHHHHCCcEEEE
Confidence 344444445555666665554211 11 1234468999999998775
No 227
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.53 E-value=0.11 Score=45.02 Aligned_cols=104 Identities=14% Similarity=0.310 Sum_probs=61.3
Q ss_pred CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCC-cccccccccceeccccCcccccchh-hhcCCC
Q 005367 345 TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLP-MGISKLVSLQLLDISYTRVRELPEE-LKALVN 422 (700)
Q Consensus 345 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~ 422 (700)
.|..+.+|+.+.+.. .+..+....|..+++|+.+.+.++ +..++ ..+..++.|+.+.+.. .+..++.. +..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 467888999999875 577788888889988999998875 44443 3467777899998866 55544443 556889
Q ss_pred CCEEecccccCccccchhhhcCCCccceeeccc
Q 005367 423 LRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFA 455 (700)
Q Consensus 423 L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~ 455 (700)
|+.+.+..+ +..++...+.++ +|+.+.+..
T Consensus 83 l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 83 LKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 999988643 456666557776 888887753
No 228
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.52 E-value=0.75 Score=54.00 Aligned_cols=31 Identities=29% Similarity=0.338 Sum_probs=22.4
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK 34 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~ 34 (700)
++|+|||++|+.++... .......+.++++.
T Consensus 603 p~GvGKt~lA~~La~~l---~~~~~~~i~~d~s~ 633 (852)
T TIGR03346 603 PTGVGKTELAKALAEFL---FDDEDAMVRIDMSE 633 (852)
T ss_pred CCCCCHHHHHHHHHHHh---cCCCCcEEEEechh
Confidence 47999999999999886 33334555566554
No 229
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=0.16 Score=48.32 Aligned_cols=90 Identities=17% Similarity=0.128 Sum_probs=53.9
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhcc-CcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSK-KKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~r~Ll 79 (700)
++|.|||.+|++++++. ..+||.+- -.++.++.-.. -..++.++.+.-+. |-+++
T Consensus 219 ppgtgktl~aravanrt--------dacfirvi--------gselvqkyvge--------garmvrelf~martkkacii 274 (435)
T KOG0729|consen 219 PPGTGKTLCARAVANRT--------DACFIRVI--------GSELVQKYVGE--------GARMVRELFEMARTKKACII 274 (435)
T ss_pred CCCCchhHHHHHHhccc--------CceEEeeh--------hHHHHHHHhhh--------hHHHHHHHHHHhcccceEEE
Confidence 58999999999999997 23445432 22444444221 23455555555555 45899
Q ss_pred EEcCCCch-------------h-h---hhh--hcCcCCC--CcEEEEecCchhhhh
Q 005367 80 LLDDLWER-------------V-D---LKK--IGVPLPK--NSAVVFTTRFVDVCG 114 (700)
Q Consensus 80 VlDdv~~~-------------~-~---~~~--l~~~~~~--gs~iiiTTr~~~~~~ 114 (700)
+||.++-. + + ++- .+..|.+ +-+|+..|..++.+.
T Consensus 275 ffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtld 330 (435)
T KOG0729|consen 275 FFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLD 330 (435)
T ss_pred EeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcC
Confidence 99988532 1 0 111 1244555 678888887777643
No 230
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=94.50 E-value=0.15 Score=49.89 Aligned_cols=85 Identities=14% Similarity=0.165 Sum_probs=47.0
Q ss_pred CCCCcHHHHHHHHHhhcccC---CCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCC----------CCCccHHHHHHH
Q 005367 1 MGGVGKTTLLTQINNKFVDN---PTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDS----------WKNKSLEEKAQD 67 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~----------~~~~~~~~~~~~ 67 (700)
.+|+|||++|.+++...... .+....++|++..+.++...+ .++++.++..... .......+....
T Consensus 27 ~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~l~~ 105 (235)
T cd01123 27 EFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYNSDHQLQLLEE 105 (235)
T ss_pred CCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCCHHHHHHHHHH
Confidence 47999999999998664111 112468999998887765443 4444444321100 011122233344
Q ss_pred HHHHhcc--CcEEEEEcCCCc
Q 005367 68 IFKTLSK--KKFALLLDDLWE 86 (700)
Q Consensus 68 l~~~l~~--~r~LlVlDdv~~ 86 (700)
+...+.+ +--++|+|.+..
T Consensus 106 l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 106 LEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHhhcCCeeEEEEeCcHH
Confidence 4444433 456888888743
No 231
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.49 E-value=0.048 Score=51.62 Aligned_cols=102 Identities=10% Similarity=0.096 Sum_probs=55.7
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHH-HHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE-KIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~Ll 79 (700)
+.|.||||++..++... .......+++- .++.... .....+..+... ..+.....+.++..+....=++
T Consensus 9 ptGSGKTTll~~ll~~~---~~~~~~~i~t~-e~~~E~~~~~~~~~i~q~~v------g~~~~~~~~~i~~aLr~~pd~i 78 (198)
T cd01131 9 PTGSGKSTTLAAMIDYI---NKNKTHHILTI-EDPIEFVHESKRSLINQREV------GLDTLSFENALKAALRQDPDVI 78 (198)
T ss_pred CCCCCHHHHHHHHHHHh---hhcCCcEEEEE-cCCccccccCccceeeeccc------CCCccCHHHHHHHHhcCCcCEE
Confidence 46999999999988776 22333333332 1221110 000011111111 1112334556677777667799
Q ss_pred EEcCCCchhhhhhhcCcCCCCcEEEEecCchhh
Q 005367 80 LLDDLWERVDLKKIGVPLPKNSAVVFTTRFVDV 112 (700)
Q Consensus 80 VlDdv~~~~~~~~l~~~~~~gs~iiiTTr~~~~ 112 (700)
++|.+.+.+.++........|..++.|+-..+.
T Consensus 79 i~gEird~e~~~~~l~~a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 79 LVGEMRDLETIRLALTAAETGHLVMSTLHTNSA 111 (198)
T ss_pred EEcCCCCHHHHHHHHHHHHcCCEEEEEecCCcH
Confidence 999998887766654554557667666654333
No 232
>PRK09183 transposase/IS protein; Provisional
Probab=94.48 E-value=0.038 Score=54.66 Aligned_cols=17 Identities=35% Similarity=0.446 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+|||+||..++...
T Consensus 110 p~GtGKThLa~al~~~a 126 (259)
T PRK09183 110 PSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999998775
No 233
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.36 E-value=1.8 Score=45.19 Aligned_cols=156 Identities=15% Similarity=0.240 Sum_probs=92.3
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHc--CCCCCCCCCccHHHHHHHHHHHhccC--cE
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKI--GLCNDSWKNKSLEEKAQDIFKTLSKK--KF 77 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~--r~ 77 (700)
+|.|||.+...++.+....... -.++++++.+-....+++..|...+ .... .....+....+.+...+. -+
T Consensus 184 PGtgkt~~l~rvl~~~~~~~~~-~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s----~~~~~~~~~~~~~h~~q~k~~~ 258 (529)
T KOG2227|consen 184 PGTGKTALLSRVLDSLSKSSKS-PVTVYINCTSLTEASAIFKKIFSSLLQDLVS----PGTGMQHLEKFEKHTKQSKFML 258 (529)
T ss_pred CCcchHHHHHHHHHhhhhhccc-ceeEEEeeccccchHHHHHHHHHHHHHHhcC----CchhHHHHHHHHHHHhcccceE
Confidence 7999999999999997211111 2568888887777888888888877 2221 222255666666666543 48
Q ss_pred EEEEcCCCchh-----hhhhhc--CcCCCCcEEEEec--Cchhh----hhcc-----cCcceEeccCCChHhHHHHHHHH
Q 005367 78 ALLLDDLWERV-----DLKKIG--VPLPKNSAVVFTT--RFVDV----CGRM-----EARRTFKVECLSDEAAWELFREK 139 (700)
Q Consensus 78 LlVlDdv~~~~-----~~~~l~--~~~~~gs~iiiTT--r~~~~----~~~~-----~~~~~~~l~~L~~~~a~~l~~~~ 139 (700)
++|+|..+... .+-.+. ..++ ++++|+-- ..-+. +..+ -....+..++.+.++-.+.+..+
T Consensus 259 llVlDEmD~L~tr~~~vLy~lFewp~lp-~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~r 337 (529)
T KOG2227|consen 259 LLVLDEMDHLITRSQTVLYTLFEWPKLP-NSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQR 337 (529)
T ss_pred EEEechhhHHhhcccceeeeehhcccCC-cceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHH
Confidence 99999987552 111111 1122 55555432 11111 1111 12467889999999999999999
Q ss_pred hcccccCCCCChHHHHHHHHHHhCCC
Q 005367 140 VGEETIESHHSIPELAQTVAKECGGL 165 (700)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~i~~~~~g~ 165 (700)
+.... ..+.....+..+++++.|.
T Consensus 338 l~~~~--t~~~~~~Aie~~ArKvaa~ 361 (529)
T KOG2227|consen 338 LSEES--TSIFLNAAIELCARKVAAP 361 (529)
T ss_pred Hhccc--ccccchHHHHHHHHHhccC
Confidence 85433 2222334555555555443
No 234
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.33 E-value=0.15 Score=49.41 Aligned_cols=82 Identities=15% Similarity=0.135 Sum_probs=47.4
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCC------CEEEEEEeCCccCHHHHHHHHHHHcCCCCCC-------CCCccHHHHHHH
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDF------DYVIWVVVSKDLQLEKIQETIRKKIGLCNDS-------WKNKSLEEKAQD 67 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f------~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~~~ 67 (700)
.+|+|||+||.+++... .... ..++|++....++...+. .+++........ ....+.++....
T Consensus 27 ~~GsGKT~l~~~ia~~~---~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 102 (226)
T cd01393 27 EFGSGKTQLCLQLAVEA---QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYNGEQQLEI 102 (226)
T ss_pred CCCCChhHHHHHHHHHh---hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCCHHHHHHH
Confidence 47999999999998875 2223 678999987776654443 333333211000 012334445444
Q ss_pred HHHHhc---c-CcEEEEEcCCCc
Q 005367 68 IFKTLS---K-KKFALLLDDLWE 86 (700)
Q Consensus 68 l~~~l~---~-~r~LlVlDdv~~ 86 (700)
+..... . +--++|+|.+..
T Consensus 103 l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 103 VEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred HHHHHHHhhcCCeeEEEEcCcch
Confidence 444432 2 445888888753
No 235
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=94.33 E-value=0.12 Score=49.38 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=29.4
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHH
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQE 43 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 43 (700)
.+|+|||++|.+++... .+....++||+... ++...+.+
T Consensus 20 ~~GsGKT~l~~~~~~~~---~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 20 PPGSGKTNICMILAVNA---ARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCCCHHHHHHHHHHHH---HhCCCeEEEEECCC-CCHHHHHH
Confidence 48999999999998886 34457899999876 55544433
No 236
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.32 E-value=0.8 Score=52.84 Aligned_cols=73 Identities=21% Similarity=0.205 Sum_probs=38.6
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhc-cCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLS-KKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~r~Ll 79 (700)
++|+|||+||+.+++.. . ...+.+++++..+.. .+.+.++.+..-..... ...+.+.++ ...-++
T Consensus 492 p~GvGKT~lA~~la~~l---~---~~~~~~d~se~~~~~----~~~~lig~~~gyvg~~~----~~~l~~~~~~~p~~Vv 557 (731)
T TIGR02639 492 PTGVGKTELAKQLAEAL---G---VHLERFDMSEYMEKH----TVSRLIGAPPGYVGFEQ----GGLLTEAVRKHPHCVL 557 (731)
T ss_pred CCCccHHHHHHHHHHHh---c---CCeEEEeCchhhhcc----cHHHHhcCCCCCcccch----hhHHHHHHHhCCCeEE
Confidence 57999999999999886 2 334556554432211 12222322211001111 112233333 345799
Q ss_pred EEcCCCch
Q 005367 80 LLDDLWER 87 (700)
Q Consensus 80 VlDdv~~~ 87 (700)
+||+++..
T Consensus 558 llDEieka 565 (731)
T TIGR02639 558 LLDEIEKA 565 (731)
T ss_pred EEechhhc
Confidence 99999765
No 237
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=94.31 E-value=0.84 Score=47.07 Aligned_cols=75 Identities=21% Similarity=0.157 Sum_probs=42.2
Q ss_pred HHHHHHHhc--cCcEEEEEcCCCch------hhhhhhcCcCCC-CcEEEEecCchhhhhcccC-----------------
Q 005367 65 AQDIFKTLS--KKKFALLLDDLWER------VDLKKIGVPLPK-NSAVVFTTRFVDVCGRMEA----------------- 118 (700)
Q Consensus 65 ~~~l~~~l~--~~r~LlVlDdv~~~------~~~~~l~~~~~~-gs~iiiTTr~~~~~~~~~~----------------- 118 (700)
...+...+. ++|.++|+||++.- +.++.++..+.- +..+|+..-...+...+..
T Consensus 160 ~~~~~~~l~~~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeK 239 (325)
T PF07693_consen 160 ISKIKKKLKESKKRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEK 239 (325)
T ss_pred HHHHHHhhhcCCceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHh
Confidence 334444443 48899999999864 224444333332 6666665543333332211
Q ss_pred --cceEeccCCChHhHHHHHHHH
Q 005367 119 --RRTFKVECLSDEAAWELFREK 139 (700)
Q Consensus 119 --~~~~~l~~L~~~~a~~l~~~~ 139 (700)
+..+.+++.+..+-.+++...
T Consensus 240 iiq~~~~lP~~~~~~~~~~~~~~ 262 (325)
T PF07693_consen 240 IIQVPFSLPPPSPSDLERYLNEL 262 (325)
T ss_pred hcCeEEEeCCCCHHHHHHHHHHH
Confidence 245777777777766666555
No 238
>PTZ00202 tuzin; Provisional
Probab=94.29 E-value=0.25 Score=51.44 Aligned_cols=127 Identities=15% Similarity=0.132 Sum_probs=70.6
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-----c-c
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTL-----S-K 74 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l-----~-~ 74 (700)
++|+|||||++.+.... . ...++++.. +..+++..++..++.+.. ....++.+.|.+.+ . +
T Consensus 294 ~~G~GKTTLlR~~~~~l---~---~~qL~vNpr---g~eElLr~LL~ALGV~p~----~~k~dLLrqIqeaLl~~~~e~G 360 (550)
T PTZ00202 294 FRGCGKSSLCRSAVRKE---G---MPAVFVDVR---GTEDTLRSVVKALGVPNV----EACGDLLDFISEACRRAKKMNG 360 (550)
T ss_pred CCCCCHHHHHHHHHhcC---C---ceEEEECCC---CHHHHHHHHHHHcCCCCc----ccHHHHHHHHHHHHHHHHHhCC
Confidence 57999999999999776 2 223333332 789999999999997432 22234444444433 2 4
Q ss_pred CcEEEEEc--CCCchh-hhhh-hcCcCCC-CcEEEEecCchhhh---hcccCcceEeccCCChHhHHHHHHHHh
Q 005367 75 KKFALLLD--DLWERV-DLKK-IGVPLPK-NSAVVFTTRFVDVC---GRMEARRTFKVECLSDEAAWELFREKV 140 (700)
Q Consensus 75 ~r~LlVlD--dv~~~~-~~~~-l~~~~~~-gs~iiiTTr~~~~~---~~~~~~~~~~l~~L~~~~a~~l~~~~~ 140 (700)
++.+||+- +-++.. ...+ +..+... -|.|++----+++- .....--.|-++.++-++|.+......
T Consensus 361 rtPVLII~lreg~~l~rvyne~v~la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 361 ETPLLVLKLREGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred CCEEEEEEecCCCcHHHHHHHHHHHHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 56666654 222221 1111 1111211 46666543221110 001112468899999999888766543
No 239
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.27 E-value=0.44 Score=55.91 Aligned_cols=146 Identities=12% Similarity=0.132 Sum_probs=74.6
Q ss_pred CCCCcHHHHHHHHHhhcccCCC---CCCEEEE-EEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhc--c
Q 005367 1 MGGVGKTTLLTQINNKFVDNPT---DFDYVIW-VVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLS--K 74 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~---~f~~~~w-v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~ 74 (700)
.+|+|||++|+.++++...... -....+| +++ . .+.... . -....+..++.+...+. +
T Consensus 202 ~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~------~----~l~a~~--~----~~g~~e~~l~~~l~~~~~~~ 265 (852)
T TIGR03346 202 EPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM------G----ALIAGA--K----YRGEFEERLKAVLNEVTKSE 265 (852)
T ss_pred CCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH------H----HHhhcc--h----hhhhHHHHHHHHHHHHHhcC
Confidence 4799999999999998621100 0122333 221 1 111000 0 12334445555554443 3
Q ss_pred CcEEEEEcCCCchh----------hhhhhcCcCCCC-cEEEEecCchhhhhcc-------cCcceEeccCCChHhHHHHH
Q 005367 75 KKFALLLDDLWERV----------DLKKIGVPLPKN-SAVVFTTRFVDVCGRM-------EARRTFKVECLSDEAAWELF 136 (700)
Q Consensus 75 ~r~LlVlDdv~~~~----------~~~~l~~~~~~g-s~iiiTTr~~~~~~~~-------~~~~~~~l~~L~~~~a~~l~ 136 (700)
++.+|+||++.... ..+-++..+..| -++|-+|...+.-..+ .....+.++..+.++..+++
T Consensus 266 ~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL 345 (852)
T TIGR03346 266 GQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISIL 345 (852)
T ss_pred CCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHH
Confidence 68999999997442 122333333334 3444445433331111 12346889999999999988
Q ss_pred HHHhcccccC-CCCChHHHHHHHHHHh
Q 005367 137 REKVGEETIE-SHHSIPELAQTVAKEC 162 (700)
Q Consensus 137 ~~~~~~~~~~-~~~~~~~~~~~i~~~~ 162 (700)
.......... .-....+....+++.+
T Consensus 346 ~~~~~~~e~~~~v~~~d~~i~~~~~ls 372 (852)
T TIGR03346 346 RGLKERYEVHHGVRITDPAIVAAATLS 372 (852)
T ss_pred HHHHHHhccccCCCCCHHHHHHHHHhc
Confidence 7665332211 1112344555555555
No 240
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.24 E-value=0.029 Score=29.25 Aligned_cols=17 Identities=35% Similarity=0.720 Sum_probs=10.0
Q ss_pred CCccEEEEcCCCCCCCCC
Q 005367 645 PRLKELEVRGCDSLEKLP 662 (700)
Q Consensus 645 ~~L~~L~i~~C~~L~~lp 662 (700)
++|+.|++++|. |+++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 467888888886 77766
No 241
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.23 E-value=0.08 Score=53.60 Aligned_cols=77 Identities=17% Similarity=0.066 Sum_probs=49.7
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCC---CCCccHHHHHHHHHHHhcc-Cc
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDS---WKNKSLEEKAQDIFKTLSK-KK 76 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~-~r 76 (700)
++|+|||+||.+++... ...-..++||+..+.++.. .+++++...+. ..+.+.++....+....++ .-
T Consensus 63 p~GsGKTtLal~~~~~~---~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~ 134 (325)
T cd00983 63 PESSGKTTLALHAIAEA---QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAV 134 (325)
T ss_pred CCCCCHHHHHHHHHHHH---HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCC
Confidence 47999999999998886 3345678899987776653 34444432111 1233455565555555543 45
Q ss_pred EEEEEcCCC
Q 005367 77 FALLLDDLW 85 (700)
Q Consensus 77 ~LlVlDdv~ 85 (700)
-++|+|.|.
T Consensus 135 ~lIVIDSva 143 (325)
T cd00983 135 DLIVVDSVA 143 (325)
T ss_pred CEEEEcchH
Confidence 789999885
No 242
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.14 E-value=0.026 Score=49.99 Aligned_cols=36 Identities=31% Similarity=0.311 Sum_probs=24.5
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHH
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQ 42 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 42 (700)
.+|+|||+||+.+++.. . ....-+.+....+..++.
T Consensus 7 ~~G~GKt~l~~~la~~~---~---~~~~~i~~~~~~~~~dl~ 42 (139)
T PF07728_consen 7 PPGTGKTTLARELAALL---G---RPVIRINCSSDTTEEDLI 42 (139)
T ss_dssp SSSSSHHHHHHHHHHHH---T---CEEEEEE-TTTSTHHHHH
T ss_pred CCCCCHHHHHHHHHHHh---h---cceEEEEeccccccccce
Confidence 47999999999999997 1 233345566666666553
No 243
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.11 E-value=0.0087 Score=54.65 Aligned_cols=63 Identities=14% Similarity=0.105 Sum_probs=40.8
Q ss_pred hhhccccCCCceeeecCcCc-cccccEEEEeccccccceeecccccccccCCccccCCccEEeeecCcCcccc
Q 005367 506 ALFLHEFDREESIDVAGLAD-LEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHL 577 (700)
Q Consensus 506 ~L~l~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 577 (700)
+|.+..|..+.+..+..+.+ .++|+.|+|++|+.+++-...++. .+++|+.|.+.+-+.+..+
T Consensus 129 ~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~---------~lknLr~L~l~~l~~v~~~ 192 (221)
T KOG3864|consen 129 SLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL---------KLKNLRRLHLYDLPYVANL 192 (221)
T ss_pred hheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH---------HhhhhHHHHhcCchhhhch
Confidence 33444444444444444444 478888888888887766666655 6888888888876655554
No 244
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=94.09 E-value=0.21 Score=49.22 Aligned_cols=83 Identities=14% Similarity=0.263 Sum_probs=49.1
Q ss_pred CCCcHHHHHHHHHhhcccCCCCC-CEEEEEEeCCcc-CHHHHHHHHHHHcCCC-----CCCCCCccHH-----HHHHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDF-DYVIWVVVSKDL-QLEKIQETIRKKIGLC-----NDSWKNKSLE-----EKAQDIF 69 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f-~~~~wv~~~~~~-~~~~~~~~i~~~~~~~-----~~~~~~~~~~-----~~~~~l~ 69 (700)
+|+|||+||.+++++. ..+| +.++++-+++.. ...++.+.+.+.-... ....+..-.. ...-.+.
T Consensus 78 ~G~GKTtLa~~i~~~i---~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~~a~~~A 154 (274)
T cd01133 78 AGVGKTVLIMELINNI---AKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVALTGLTMA 154 (274)
T ss_pred CCCChhHHHHHHHHHH---HhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 6999999999999997 3334 456666676665 4667777666532111 0111111111 1112234
Q ss_pred HHh---ccCcEEEEEcCCCch
Q 005367 70 KTL---SKKKFALLLDDLWER 87 (700)
Q Consensus 70 ~~l---~~~r~LlVlDdv~~~ 87 (700)
+.+ +++.+|+|+||+...
T Consensus 155 Eyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 155 EYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHhcCCeEEEEEeChhHH
Confidence 444 378999999998554
No 245
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.08 E-value=0.16 Score=49.73 Aligned_cols=102 Identities=11% Similarity=0.116 Sum_probs=59.5
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCC-----------------------CC--
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCN-----------------------DS-- 55 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~-----------------------~~-- 55 (700)
.+|+|||++|.+++... -+.-+.++||...+ +..++.+.+. +++... ..
T Consensus 29 ~pGsGKT~la~~~l~~~---~~~ge~~lyvs~ee--~~~~i~~~~~-~~g~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~ 102 (237)
T TIGR03877 29 GPGTGKSIFSQQFLWNG---LQMGEPGIYVALEE--HPVQVRRNMA-QFGWDVRKYEEEGKFAIVDAFTGGIGEAAEREK 102 (237)
T ss_pred CCCCCHHHHHHHHHHHH---HHcCCcEEEEEeeC--CHHHHHHHHH-HhCCCHHHHhhcCCEEEEecccccccccccccc
Confidence 48999999999988775 24567888888655 3444444432 222110 00
Q ss_pred ---CCCccHHHHHHHHHHHhcc-CcEEEEEcCCCchh---------hhhhhcCcCCC-CcEEEEecC
Q 005367 56 ---WKNKSLEEKAQDIFKTLSK-KKFALLLDDLWERV---------DLKKIGVPLPK-NSAVVFTTR 108 (700)
Q Consensus 56 ---~~~~~~~~~~~~l~~~l~~-~r~LlVlDdv~~~~---------~~~~l~~~~~~-gs~iiiTTr 108 (700)
....+.++....+.+..+. +.-.+|+|.+.... .+..+...+.. |..+|+|+.
T Consensus 103 ~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~l~~~~~~~~r~~l~~l~~~lk~~~~t~llt~~ 169 (237)
T TIGR03877 103 YVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTTLYITKPAMARSIVMQLKRVLSGLGCTSIFVSQ 169 (237)
T ss_pred ccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhHhhcCChHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 0224566677777766643 44579999986531 11222222223 788888864
No 246
>PRK05541 adenylylsulfate kinase; Provisional
Probab=94.07 E-value=0.15 Score=47.18 Aligned_cols=28 Identities=25% Similarity=0.541 Sum_probs=22.1
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVV 31 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~ 31 (700)
++|+||||+|+.++... ...+..+++++
T Consensus 15 ~~GsGKst~a~~l~~~l---~~~~~~~~~~~ 42 (176)
T PRK05541 15 LAGSGKTTIAKALYERL---KLKYSNVIYLD 42 (176)
T ss_pred CCCCCHHHHHHHHHHHH---HHcCCcEEEEe
Confidence 57999999999999988 44556666664
No 247
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.02 E-value=0.52 Score=53.33 Aligned_cols=138 Identities=14% Similarity=0.098 Sum_probs=73.0
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
++|+|||++|+.++... .-.| +.++.++ + ...+. ..........+...-....++|+
T Consensus 193 ~~G~GKt~~~~~~a~~~---~~~f---~~is~~~------~----~~~~~-------g~~~~~~~~~f~~a~~~~P~Iif 249 (644)
T PRK10733 193 PPGTGKTLLAKAIAGEA---KVPF---FTISGSD------F----VEMFV-------GVGASRVRDMFEQAKKAAPCIIF 249 (644)
T ss_pred CCCCCHHHHHHHHHHHc---CCCE---EEEehHH------h----HHhhh-------cccHHHHHHHHHHHHhcCCcEEE
Confidence 48999999999999886 3222 2222211 1 11110 01111222223333334678999
Q ss_pred EcCCCchh----------------hhhhhc---CcCCC--CcEEEEecCchhhhhcc-----cCcceEeccCCChHhHHH
Q 005367 81 LDDLWERV----------------DLKKIG---VPLPK--NSAVVFTTRFVDVCGRM-----EARRTFKVECLSDEAAWE 134 (700)
Q Consensus 81 lDdv~~~~----------------~~~~l~---~~~~~--gs~iiiTTr~~~~~~~~-----~~~~~~~l~~L~~~~a~~ 134 (700)
||+++... .+..+. ..+.. +..+|.||..++..... +-++.+.++..+.++-.+
T Consensus 250 IDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~ 329 (644)
T PRK10733 250 IDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQ 329 (644)
T ss_pred ehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHH
Confidence 99986541 111221 11222 44555688777654322 225678899888888888
Q ss_pred HHHHHhcccccCCCCChHHHHHHHHHHhCCC
Q 005367 135 LFREKVGEETIESHHSIPELAQTVAKECGGL 165 (700)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 165 (700)
++..+........... ...+++.+.|+
T Consensus 330 Il~~~~~~~~l~~~~d----~~~la~~t~G~ 356 (644)
T PRK10733 330 ILKVHMRRVPLAPDID----AAIIARGTPGF 356 (644)
T ss_pred HHHHHhhcCCCCCcCC----HHHHHhhCCCC
Confidence 8887775433222211 23456655553
No 248
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.99 E-value=0.68 Score=47.41 Aligned_cols=66 Identities=18% Similarity=0.177 Sum_probs=38.7
Q ss_pred cCcEEEEEcCCCchh--h---hhhhcCcCCCCcEEEEecCchh-hhhcccC-cceEeccCCChHhHHHHHHHH
Q 005367 74 KKKFALLLDDLWERV--D---LKKIGVPLPKNSAVVFTTRFVD-VCGRMEA-RRTFKVECLSDEAAWELFREK 139 (700)
Q Consensus 74 ~~r~LlVlDdv~~~~--~---~~~l~~~~~~gs~iiiTTr~~~-~~~~~~~-~~~~~l~~L~~~~a~~l~~~~ 139 (700)
+++-.+|+|+++... . +.......+.+..+|++|.+.+ +...+.. -..+.+.+++.+++.+.+.+.
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 344455668876542 2 2222222344676777776644 3333222 257889999999999888653
No 249
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=0.57 Score=44.39 Aligned_cols=130 Identities=15% Similarity=0.192 Sum_probs=68.1
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTL-SKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~Ll 79 (700)
++|+|||.||++++++. ...| |.+-. .++.++.-..+ ..++..+.+.- ++...++
T Consensus 197 ppg~gktml~kava~~t---~a~f-----irvvg--------sefvqkylgeg--------prmvrdvfrlakenapsii 252 (408)
T KOG0727|consen 197 PPGTGKTMLAKAVANHT---TAAF-----IRVVG--------SEFVQKYLGEG--------PRMVRDVFRLAKENAPSII 252 (408)
T ss_pred CCCCcHHHHHHHHhhcc---chhe-----eeecc--------HHHHHHHhccC--------cHHHHHHHHHHhccCCcEE
Confidence 58999999999999997 3333 32211 12333332211 12333333333 3567899
Q ss_pred EEcCCCchh------------hh----hhh---cCcCCC--CcEEEEecCchhhhhcc-----cCcceEeccCCChHhHH
Q 005367 80 LLDDLWERV------------DL----KKI---GVPLPK--NSAVVFTTRFVDVCGRM-----EARRTFKVECLSDEAAW 133 (700)
Q Consensus 80 VlDdv~~~~------------~~----~~l---~~~~~~--gs~iiiTTr~~~~~~~~-----~~~~~~~l~~L~~~~a~ 133 (700)
++|.++... ++ -++ ...|.+ +-+||..|...+..+.. +-++.++.+--+-.+-+
T Consensus 253 fideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkr 332 (408)
T KOG0727|consen 253 FIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKR 332 (408)
T ss_pred EeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhh
Confidence 999886431 11 111 223444 77888877665553221 22467777733444445
Q ss_pred HHHHHHhcccccCCCCChHHH
Q 005367 134 ELFREKVGEETIESHHSIPEL 154 (700)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~ 154 (700)
-.|...........+-+++++
T Consensus 333 lvf~titskm~ls~~vdle~~ 353 (408)
T KOG0727|consen 333 LVFSTITSKMNLSDEVDLEDL 353 (408)
T ss_pred hhHHhhhhcccCCcccCHHHH
Confidence 555555544443444444443
No 250
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=93.95 E-value=0.11 Score=49.00 Aligned_cols=81 Identities=19% Similarity=0.189 Sum_probs=49.9
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCc-cCHHHHHHHHHHHcCCCCCC-CCCccHHHHHHHHHHHhccC-cE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD-LQLEKIQETIRKKIGLCNDS-WKNKSLEEKAQDIFKTLSKK-KF 77 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~-r~ 77 (700)
+.|+||||.+.+++.+. ..+-..+..|+.... ....+.++..++.++.+.-. ....+..+......+..+.+ .=
T Consensus 9 ptGvGKTTt~aKLAa~~---~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~~~D 85 (196)
T PF00448_consen 9 PTGVGKTTTIAKLAARL---KLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKKGYD 85 (196)
T ss_dssp STTSSHHHHHHHHHHHH---HHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHTTSS
T ss_pred CCCCchHhHHHHHHHHH---hhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhcCCC
Confidence 57999999999999998 333556777776544 46788889999999865311 12223444444333333333 34
Q ss_pred EEEEcCC
Q 005367 78 ALLLDDL 84 (700)
Q Consensus 78 LlVlDdv 84 (700)
++++|=.
T Consensus 86 ~vlIDT~ 92 (196)
T PF00448_consen 86 LVLIDTA 92 (196)
T ss_dssp EEEEEE-
T ss_pred EEEEecC
Confidence 7888854
No 251
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.95 E-value=0.46 Score=55.54 Aligned_cols=31 Identities=29% Similarity=0.310 Sum_probs=21.4
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK 34 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~ 34 (700)
+.|+|||++|+.+++.. .+.....+.++++.
T Consensus 606 p~G~GKT~lA~aLa~~l---~~~~~~~i~id~se 636 (857)
T PRK10865 606 PTGVGKTELCKALANFM---FDSDDAMVRIDMSE 636 (857)
T ss_pred CCCCCHHHHHHHHHHHh---hcCCCcEEEEEhHH
Confidence 47999999999999876 22233445565543
No 252
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.92 E-value=0.51 Score=51.28 Aligned_cols=131 Identities=20% Similarity=0.227 Sum_probs=67.2
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTL-SKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~Ll 79 (700)
+||+|||++|++++... .-.|=.+ +.+ +++.... ..+ +..+..+++.- +-..+++
T Consensus 476 PPGC~KT~lAkalAne~---~~nFlsv-----kgp--------EL~sk~v-------GeS-Er~ir~iF~kAR~~aP~Ii 531 (693)
T KOG0730|consen 476 PPGCGKTLLAKALANEA---GMNFLSV-----KGP--------ELFSKYV-------GES-ERAIREVFRKARQVAPCII 531 (693)
T ss_pred CCCcchHHHHHHHhhhh---cCCeeec-----cCH--------HHHHHhc-------Cch-HHHHHHHHHHHhhcCCeEE
Confidence 68999999999999997 4444322 221 2222221 111 22222222222 2355788
Q ss_pred EEcCCCchhh-------------hhhhc---CcCCC-CcE-EEEecCchhhhhc--cc---CcceEeccCCChHhHHHHH
Q 005367 80 LLDDLWERVD-------------LKKIG---VPLPK-NSA-VVFTTRFVDVCGR--ME---ARRTFKVECLSDEAAWELF 136 (700)
Q Consensus 80 VlDdv~~~~~-------------~~~l~---~~~~~-gs~-iiiTTr~~~~~~~--~~---~~~~~~l~~L~~~~a~~l~ 136 (700)
.||.++...- +..++ ..+.. ... ||-.|..++..+. ++ .+..+.++.-+.+--.++|
T Consensus 532 FfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Il 611 (693)
T KOG0730|consen 532 FFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEIL 611 (693)
T ss_pred ehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHH
Confidence 8888764411 11111 12222 233 3334544444322 22 3567788777777778899
Q ss_pred HHHhcccccCCCCChHHHH
Q 005367 137 REKVGEETIESHHSIPELA 155 (700)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~ 155 (700)
+.++-.......-.+++++
T Consensus 612 k~~~kkmp~~~~vdl~~La 630 (693)
T KOG0730|consen 612 KQCAKKMPFSEDVDLEELA 630 (693)
T ss_pred HHHHhcCCCCccccHHHHH
Confidence 9888654433333333333
No 253
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=93.85 E-value=0.11 Score=52.59 Aligned_cols=78 Identities=14% Similarity=0.065 Sum_probs=49.9
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCC---CCCccHHHHHHHHHHHhc-cCc
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDS---WKNKSLEEKAQDIFKTLS-KKK 76 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~l~~~l~-~~r 76 (700)
.+|+|||+||.+++... ...-..++||+..+..+.. .+++++...+. ..+...++....+....+ +.-
T Consensus 63 ~~GsGKTtLaL~~~~~~---~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~ 134 (321)
T TIGR02012 63 PESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAV 134 (321)
T ss_pred CCCCCHHHHHHHHHHHH---HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCC
Confidence 47999999999988886 3345677899887766553 34555432111 123345556655555554 355
Q ss_pred EEEEEcCCCc
Q 005367 77 FALLLDDLWE 86 (700)
Q Consensus 77 ~LlVlDdv~~ 86 (700)
-++|+|.|..
T Consensus 135 ~lIVIDSv~a 144 (321)
T TIGR02012 135 DIIVVDSVAA 144 (321)
T ss_pred cEEEEcchhh
Confidence 7999999853
No 254
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.85 E-value=0.53 Score=46.11 Aligned_cols=135 Identities=14% Similarity=0.182 Sum_probs=69.5
Q ss_pred CCCCcHHHHHHHHHhhcccCCC---------CCCEEEEEEeCCcc-CHHHHHHHHHHHcCCCCCC----------C----
Q 005367 1 MGGVGKTTLLTQINNKFVDNPT---------DFDYVIWVVVSKDL-QLEKIQETIRKKIGLCNDS----------W---- 56 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~---------~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~----------~---- 56 (700)
+||+|||+||.+++........ .-..+++++..++. .+..-+..+...++..... .
T Consensus 9 ~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~~~~l~~ 88 (239)
T cd01125 9 PGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGRIQPISI 88 (239)
T ss_pred CCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccCCCceec
Confidence 5899999999999886532211 22346666666654 3555666666654311100 0
Q ss_pred CC---ccHHHHHHHHHHHh-ccCcEEEEEcCCC--------chhhhhhhcCcC-----CCCcEEEEecCchhh-h-----
Q 005367 57 KN---KSLEEKAQDIFKTL-SKKKFALLLDDLW--------ERVDLKKIGVPL-----PKNSAVVFTTRFVDV-C----- 113 (700)
Q Consensus 57 ~~---~~~~~~~~~l~~~l-~~~r~LlVlDdv~--------~~~~~~~l~~~~-----~~gs~iiiTTr~~~~-~----- 113 (700)
.. .........+.+.+ ..+.-++|+|-+. +..+...+...+ ..|..||+++-...- .
T Consensus 89 ~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~~~~~~~~ 168 (239)
T cd01125 89 AREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKGSAKDGDT 168 (239)
T ss_pred ccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCcccccCccc
Confidence 00 11222333333333 3466799999663 222222222211 127778877643211 0
Q ss_pred -hcc--------cCcceEeccCCChHhHHHH
Q 005367 114 -GRM--------EARRTFKVECLSDEAAWEL 135 (700)
Q Consensus 114 -~~~--------~~~~~~~l~~L~~~~a~~l 135 (700)
... .....+.+..++++|+.++
T Consensus 169 ~~~~rGssal~~~~r~~~~l~~~~~~~~~~~ 199 (239)
T cd01125 169 QEAARGASALVDGARWVRALTRMTSEEAEKM 199 (239)
T ss_pred ccccCcHHHHhcccceEEEEeeCCHHHHHhc
Confidence 000 1234678888888887764
No 255
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.82 E-value=0.034 Score=51.01 Aligned_cols=121 Identities=12% Similarity=0.177 Sum_probs=58.7
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCc-cHHHHHHHHHHHhccCcEEEE
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNK-SLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~r~LlV 80 (700)
+|.|||++|.+++.+. .. .++++.-.... -.+..+.+......-+..+..- ...++...+.....+ .-++|
T Consensus 10 ~~sGKS~~a~~l~~~~---~~---~~~~iat~~~~-~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~-~~~Vl 81 (170)
T PRK05800 10 ARSGKSRFAERLAAQS---GL---QVLYIATAQPF-DDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP-GRCVL 81 (170)
T ss_pred CCccHHHHHHHHHHHc---CC---CcEeCcCCCCC-hHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC-CCEEE
Confidence 7999999999999875 21 23445433333 3344455544332212111111 111233333332333 33788
Q ss_pred EcCCCch----------h----hhhhhcCcCCC-CcEEEEecCchhhhhcccCcceEeccCCChHhHHHHHHHHhcc
Q 005367 81 LDDLWER----------V----DLKKIGVPLPK-NSAVVFTTRFVDVCGRMEARRTFKVECLSDEAAWELFREKVGE 142 (700)
Q Consensus 81 lDdv~~~----------~----~~~~l~~~~~~-gs~iiiTTr~~~~~~~~~~~~~~~l~~L~~~~a~~l~~~~~~~ 142 (700)
+|.+... + .+..+...+.. +..+|+|+.. +-.+....+..-+.|...+|.
T Consensus 82 ID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~~~~tvVlVs~E------------vg~g~vp~~~~~r~~~d~lG~ 146 (170)
T PRK05800 82 VDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQLPAKIILVTNE------------VGMGIVPEYRLGRHFRDIAGR 146 (170)
T ss_pred ehhHHHHHHHHhcccchHHHHHHHHHHHHHHHcCCCCEEEEEcC------------CcccccCCCHHHHHHHHHHHH
Confidence 9987332 1 11222222222 6667777753 223444455566666666654
No 256
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.80 E-value=0.2 Score=45.56 Aligned_cols=109 Identities=16% Similarity=0.083 Sum_probs=55.5
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHH---HHcCCC--CCCCCC----ccHHHHHHHHHHHh
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIR---KKIGLC--NDSWKN----KSLEEKAQDIFKTL 72 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~---~~~~~~--~~~~~~----~~~~~~~~~l~~~l 72 (700)
.|.||||.|..++.+......+--.+-|+.......-...+..+. .+.+.. ...... ....+.....++.+
T Consensus 14 ~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~a~~~l 93 (173)
T TIGR00708 14 NGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKAAWQHAKEML 93 (173)
T ss_pred CCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHHHHHHHHHHH
Confidence 589999999999999721121112224554432222222322220 000110 000011 11222333344555
Q ss_pred ccCc-EEEEEcCCCch--------hhhhhhcCcCCCCcEEEEecCch
Q 005367 73 SKKK-FALLLDDLWER--------VDLKKIGVPLPKNSAVVFTTRFV 110 (700)
Q Consensus 73 ~~~r-~LlVlDdv~~~--------~~~~~l~~~~~~gs~iiiTTr~~ 110 (700)
...+ =++|||.+... +++-++...-|++..||+|-|+.
T Consensus 94 ~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 94 ADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred hcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 5444 59999998533 44445545566688999999974
No 257
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.79 E-value=0.5 Score=54.64 Aligned_cols=140 Identities=16% Similarity=0.116 Sum_probs=71.7
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
++|+|||+||+++++.. ...| +.++.. .+.... .....+.....+.....+...+|+
T Consensus 220 ppGtGKT~laraia~~~---~~~~---i~i~~~----------~i~~~~-------~g~~~~~l~~lf~~a~~~~p~il~ 276 (733)
T TIGR01243 220 PPGTGKTLLAKAVANEA---GAYF---ISINGP----------EIMSKY-------YGESEERLREIFKEAEENAPSIIF 276 (733)
T ss_pred CCCCChHHHHHHHHHHh---CCeE---EEEecH----------HHhccc-------ccHHHHHHHHHHHHHHhcCCcEEE
Confidence 47999999999999986 3222 223211 111111 011111222222233345668999
Q ss_pred EcCCCchh----------------hhhhhcCcCCC-CcEEEE-ecCchhhh-hcc----cCcceEeccCCChHhHHHHHH
Q 005367 81 LDDLWERV----------------DLKKIGVPLPK-NSAVVF-TTRFVDVC-GRM----EARRTFKVECLSDEAAWELFR 137 (700)
Q Consensus 81 lDdv~~~~----------------~~~~l~~~~~~-gs~iii-TTr~~~~~-~~~----~~~~~~~l~~L~~~~a~~l~~ 137 (700)
||+++... ++-.+...+.. +..+|| ||...+-. ..+ .-...++++..+.++-.+++.
T Consensus 277 iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~ 356 (733)
T TIGR01243 277 IDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILK 356 (733)
T ss_pred eehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHH
Confidence 99985431 11112222222 444555 55543321 111 123568888888888888887
Q ss_pred HHhcccccCCCCChHHHHHHHHHHhCCCch
Q 005367 138 EKVGEETIESHHSIPELAQTVAKECGGLPL 167 (700)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 167 (700)
.+....... .......+++.+.|.--
T Consensus 357 ~~~~~~~l~----~d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 357 VHTRNMPLA----EDVDLDKLAEVTHGFVG 382 (733)
T ss_pred HHhcCCCCc----cccCHHHHHHhCCCCCH
Confidence 555322211 12335677888877653
No 258
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.75 E-value=0.68 Score=54.19 Aligned_cols=124 Identities=16% Similarity=0.166 Sum_probs=65.8
Q ss_pred CCCCcHHHHHHHHHhhcccCCC----CCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh--cc
Q 005367 1 MGGVGKTTLLTQINNKFVDNPT----DFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTL--SK 74 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~ 74 (700)
.+|+|||++|+.++++...... .-..+++++++.- ..... ..+..++.++.+...+ .+
T Consensus 207 ~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l----------~ag~~------~~g~~e~~lk~~~~~~~~~~ 270 (857)
T PRK10865 207 EPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL----------VAGAK------YRGEFEERLKGVLNDLAKQE 270 (857)
T ss_pred CCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhh----------hhccc------hhhhhHHHHHHHHHHHHHcC
Confidence 4899999999999999721110 0122333332211 00000 1233444444444433 24
Q ss_pred CcEEEEEcCCCchh----------hhhhhcCcCCCC-cEEEEecCchhhhhc------c-cCcceEeccCCChHhHHHHH
Q 005367 75 KKFALLLDDLWERV----------DLKKIGVPLPKN-SAVVFTTRFVDVCGR------M-EARRTFKVECLSDEAAWELF 136 (700)
Q Consensus 75 ~r~LlVlDdv~~~~----------~~~~l~~~~~~g-s~iiiTTr~~~~~~~------~-~~~~~~~l~~L~~~~a~~l~ 136 (700)
++.+|++|++.... .-+-+++.+..| -++|-+|...+.... . .....+.++..+.++..+++
T Consensus 271 ~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL 350 (857)
T PRK10865 271 GNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 350 (857)
T ss_pred CCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHH
Confidence 68999999996552 122334444444 445555544443111 1 12236778888999999988
Q ss_pred HHHh
Q 005367 137 REKV 140 (700)
Q Consensus 137 ~~~~ 140 (700)
....
T Consensus 351 ~~l~ 354 (857)
T PRK10865 351 RGLK 354 (857)
T ss_pred HHHh
Confidence 6554
No 259
>PRK04328 hypothetical protein; Provisional
Probab=93.70 E-value=0.15 Score=50.20 Aligned_cols=102 Identities=10% Similarity=0.085 Sum_probs=58.1
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCC-----------------------C--
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCND-----------------------S-- 55 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----------------------~-- 55 (700)
.+|+|||+||.+++... -+.-+.++||+..+.. .++. +-+++++.... .
T Consensus 31 ~pGsGKT~l~~~fl~~~---~~~ge~~lyis~ee~~--~~i~-~~~~~~g~d~~~~~~~~~l~iid~~~~~~~~~~~~~~ 104 (249)
T PRK04328 31 GPGTGKSIFSQQFLWNG---LQMGEPGVYVALEEHP--VQVR-RNMRQFGWDVRKYEEEGKFAIVDAFTGGIGSAAKREK 104 (249)
T ss_pred CCCCCHHHHHHHHHHHH---HhcCCcEEEEEeeCCH--HHHH-HHHHHcCCCHHHHhhcCCEEEEecccccccccccccc
Confidence 47999999999988775 3446778888876543 2322 22333332100 0
Q ss_pred ---CCCccHHHHHHHHHHHhcc-CcEEEEEcCCCchh---------hhhhhcCcCCC-CcEEEEecC
Q 005367 56 ---WKNKSLEEKAQDIFKTLSK-KKFALLLDDLWERV---------DLKKIGVPLPK-NSAVVFTTR 108 (700)
Q Consensus 56 ---~~~~~~~~~~~~l~~~l~~-~r~LlVlDdv~~~~---------~~~~l~~~~~~-gs~iiiTTr 108 (700)
....+.++....+.+.++. +.-.+|+|.+.... .+..+...+.. |..+|+|+.
T Consensus 105 ~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~l~~~~~~~~r~~~~~l~~~lk~~g~t~llt~e 171 (249)
T PRK04328 105 YVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVSTLYLTKPAMARSIVMQLKRVLSGLGCTAIFVSQ 171 (249)
T ss_pred ccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhHhhcCChHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 0123455666677666654 44589999985331 11222222222 778888864
No 260
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.68 E-value=0.29 Score=50.44 Aligned_cols=110 Identities=14% Similarity=0.093 Sum_probs=63.7
Q ss_pred CCCCcHHHHHHHHHhhcccCCC------------------CCCEEEEEEeCCccC---HHHHHHHHHHHcCCCCCCCCCc
Q 005367 1 MGGVGKTTLLTQINNKFVDNPT------------------DFDYVIWVVVSKDLQ---LEKIQETIRKKIGLCNDSWKNK 59 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~------------------~f~~~~wv~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~ 59 (700)
++|+|||++|..+++....... ....+..++.+.... ..+.++.+.+.......
T Consensus 32 p~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~----- 106 (325)
T COG0470 32 PPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESPL----- 106 (325)
T ss_pred CCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhccCCC-----
Confidence 4799999999999998721110 224556665555544 35555555555543221
Q ss_pred cHHHHHHHHHHHhccCcEEEEEcCCCchhh-----hhhhcCcCCCCcEEEEecCchh-hhhcccC-cceEeccCCC
Q 005367 60 SLEEKAQDIFKTLSKKKFALLLDDLWERVD-----LKKIGVPLPKNSAVVFTTRFVD-VCGRMEA-RRTFKVECLS 128 (700)
Q Consensus 60 ~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~-----~~~l~~~~~~gs~iiiTTr~~~-~~~~~~~-~~~~~l~~L~ 128 (700)
.++.-++|+|+++.... +.....-.+....+|++|.... +...+.+ -..+++.+.+
T Consensus 107 -------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc~~i~f~~~~ 169 (325)
T COG0470 107 -------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRCQRIRFKPPS 169 (325)
T ss_pred -------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhcceeeecCCch
Confidence 35678999999987632 3333333455888888887433 2222222 2355666633
No 261
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.68 E-value=0.028 Score=31.68 Aligned_cols=17 Identities=41% Similarity=0.718 Sum_probs=7.3
Q ss_pred ceEEEccCCcccccCCcc
Q 005367 376 LTVLKMSGNETLRQLPMG 393 (700)
Q Consensus 376 L~~L~L~~~~~~~~lp~~ 393 (700)
|++|+|++| .++.+|..
T Consensus 2 L~~Ldls~n-~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPSS 18 (22)
T ss_dssp ESEEEETSS-EESEEGTT
T ss_pred ccEEECCCC-cCEeCChh
Confidence 444444444 33344433
No 262
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=93.67 E-value=0.15 Score=49.08 Aligned_cols=34 Identities=18% Similarity=0.118 Sum_probs=25.7
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccC
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQ 37 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~ 37 (700)
.+|+|||++|.+++... ...-..++|++....+.
T Consensus 27 ~~GsGKT~l~~~~a~~~---~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 27 PPGTGKTNIAIQLAVET---AGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCCCCHHHHHHHHHHHH---HhcCCeEEEEECCCCCH
Confidence 47999999999999886 33455778887655543
No 263
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.66 E-value=0.61 Score=51.04 Aligned_cols=148 Identities=16% Similarity=0.088 Sum_probs=79.6
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc--CHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL--QLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFA 78 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~L 78 (700)
..|+|||.||++++..+. ++....+.+|+++.-. ..+.+++.+-. .+.+.+.-..-+
T Consensus 439 ~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~-------------------vfse~~~~~PSi 497 (952)
T KOG0735|consen 439 PKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQKFLNN-------------------VFSEALWYAPSI 497 (952)
T ss_pred CCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHHHHHH-------------------HHHHHHhhCCcE
Confidence 369999999999999983 5556666777665432 23333332222 233445567889
Q ss_pred EEEcCCCch--------hhhh-----------hhcCcC-CCCcE--EEEecCchhhh-----hcccCcceEeccCCChHh
Q 005367 79 LLLDDLWER--------VDLK-----------KIGVPL-PKNSA--VVFTTRFVDVC-----GRMEARRTFKVECLSDEA 131 (700)
Q Consensus 79 lVlDdv~~~--------~~~~-----------~l~~~~-~~gs~--iiiTTr~~~~~-----~~~~~~~~~~l~~L~~~~ 131 (700)
+||||++-. .+|. ++-.-+ ..+.+ +|.|....... ..........+..+...+
T Consensus 498 IvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~ 577 (952)
T KOG0735|consen 498 IVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTR 577 (952)
T ss_pred EEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhH
Confidence 999999533 0111 111111 22454 33344322221 111124567888888877
Q ss_pred HHHHHHHHhcccccCCCCChHHHHHHHHHHhCCC-chHHHHH
Q 005367 132 AWELFREKVGEETIESHHSIPELAQTVAKECGGL-PLALITI 172 (700)
Q Consensus 132 a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~ 172 (700)
-.++++....... .....+..+-++.+|+|. |.-+.++
T Consensus 578 R~~IL~~~~s~~~---~~~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 578 RKEILTTIFSKNL---SDITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred HHHHHHHHHHhhh---hhhhhHHHHHHHHhcCCccchhHHHH
Confidence 6666655442211 122244455588888774 4444433
No 264
>PRK09354 recA recombinase A; Provisional
Probab=93.64 E-value=0.12 Score=52.69 Aligned_cols=78 Identities=15% Similarity=0.068 Sum_probs=51.5
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCC---CCCccHHHHHHHHHHHhcc-Cc
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDS---WKNKSLEEKAQDIFKTLSK-KK 76 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~-~r 76 (700)
++|+|||+||.+++... .+.-..++||+..+.++.. .+++++...+. ..+...++....+...++. .-
T Consensus 68 ~~GsGKTtLal~~~~~~---~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~ 139 (349)
T PRK09354 68 PESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAV 139 (349)
T ss_pred CCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCC
Confidence 47999999999998887 3445788999988877753 34555432111 1233455566555555543 45
Q ss_pred EEEEEcCCCc
Q 005367 77 FALLLDDLWE 86 (700)
Q Consensus 77 ~LlVlDdv~~ 86 (700)
-++|+|.|..
T Consensus 140 ~lIVIDSvaa 149 (349)
T PRK09354 140 DLIVVDSVAA 149 (349)
T ss_pred CEEEEeChhh
Confidence 6999999853
No 265
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.61 E-value=0.21 Score=51.18 Aligned_cols=78 Identities=23% Similarity=0.328 Sum_probs=47.9
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhc-cCcEEEE
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLS-KKKFALL 80 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~r~LlV 80 (700)
+|||||||..+++.+. .+.. .+.+|+..+.. +..+.-+++++.+.+.. .--.+.-...|.+.+. .+.-++|
T Consensus 102 PGIGKSTLLLQva~~l---A~~~-~vLYVsGEES~---~QiklRA~RL~~~~~~l-~l~aEt~~e~I~~~l~~~~p~lvV 173 (456)
T COG1066 102 PGIGKSTLLLQVAARL---AKRG-KVLYVSGEESL---QQIKLRADRLGLPTNNL-YLLAETNLEDIIAELEQEKPDLVV 173 (456)
T ss_pred CCCCHHHHHHHHHHHH---HhcC-cEEEEeCCcCH---HHHHHHHHHhCCCccce-EEehhcCHHHHHHHHHhcCCCEEE
Confidence 7999999999999998 3333 88888765543 33445566776544221 1111122333333343 4678999
Q ss_pred EcCCCch
Q 005367 81 LDDLWER 87 (700)
Q Consensus 81 lDdv~~~ 87 (700)
+|-+.+.
T Consensus 174 IDSIQT~ 180 (456)
T COG1066 174 IDSIQTL 180 (456)
T ss_pred Eecccee
Confidence 9998443
No 266
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=93.59 E-value=0.76 Score=46.98 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=16.0
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+|||.+|++++...
T Consensus 156 PPGcGKTllAraiA~el 172 (413)
T PLN00020 156 GKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 58999999999999997
No 267
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=93.54 E-value=0.03 Score=51.36 Aligned_cols=34 Identities=24% Similarity=0.205 Sum_probs=28.4
Q ss_pred CCCCcHHHHHHHHHhhcccCC-CCCCEEEEEEeCCccC
Q 005367 1 MGGVGKTTLLTQINNKFVDNP-TDFDYVIWVVVSKDLQ 37 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~-~~f~~~~wv~~~~~~~ 37 (700)
+.|+|||.||+++++.. . +.....+-++++.-..
T Consensus 11 psGvGKT~la~~la~~l---~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 11 PSGVGKTELAKALAELL---FVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp STTSSHHHHHHHHHHHH---T-SSCCEEEEEEGGGHCS
T ss_pred CCCCCHHHHHHHHHHHh---ccCCccchHHHhhhcccc
Confidence 57999999999999998 5 6777888888766555
No 268
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=93.48 E-value=0.29 Score=49.74 Aligned_cols=50 Identities=16% Similarity=0.147 Sum_probs=35.3
Q ss_pred CCCCcHHHHHHHHHhhccc---CCCCCCEEEEEEeCCccCHHHHHHHHHHHcCC
Q 005367 1 MGGVGKTTLLTQINNKFVD---NPTDFDYVIWVVVSKDLQLEKIQETIRKKIGL 51 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~ 51 (700)
.+|+|||+|+.+++-...- ..+.-..++||+..+.++.+.+.+ ++++++.
T Consensus 104 ~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 104 EFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred CCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 4799999999998754311 112335889999988888877654 5676654
No 269
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.46 E-value=0.59 Score=45.56 Aligned_cols=138 Identities=16% Similarity=0.219 Sum_probs=70.8
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHH-HcCCCCCCCCCccHHHHHHHHHHHh-ccCcEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRK-KIGLCNDSWKNKSLEEKAQDIFKTL-SKKKFA 78 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~L 78 (700)
++|+|||.||++|+-.. . .-|+++++. ++.. .++ .+ +.+++-+.+.- +++.-+
T Consensus 174 PPGTGKSYLAKAVATEA---n-----STFFSvSSS--------DLvSKWmG--------ES-EkLVknLFemARe~kPSI 228 (439)
T KOG0739|consen 174 PPGTGKSYLAKAVATEA---N-----STFFSVSSS--------DLVSKWMG--------ES-EKLVKNLFEMARENKPSI 228 (439)
T ss_pred CCCCcHHHHHHHHHhhc---C-----CceEEeehH--------HHHHHHhc--------cH-HHHHHHHHHHHHhcCCcE
Confidence 58999999999999987 1 223344333 1221 121 11 22333333332 468899
Q ss_pred EEEcCCCch---------hhhhhhcC-------cCCC---CcEEEEecCchhhhhcc---cCcceEeccCCChHhHHHHH
Q 005367 79 LLLDDLWER---------VDLKKIGV-------PLPK---NSAVVFTTRFVDVCGRM---EARRTFKVECLSDEAAWELF 136 (700)
Q Consensus 79 lVlDdv~~~---------~~~~~l~~-------~~~~---gs~iiiTTr~~~~~~~~---~~~~~~~l~~L~~~~a~~l~ 136 (700)
|++|.++.. +....++. ..+. |--|+=.|..+=++++. +-...+.++--+...-..+|
T Consensus 229 IFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF 308 (439)
T KOG0739|consen 229 IFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMF 308 (439)
T ss_pred EEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhh
Confidence 999999643 11222211 1122 33344456554444332 12344555444444445577
Q ss_pred HHHhcccccCCCCChHHHHHHHHHHhCCCc
Q 005367 137 REKVGEETIESHHSIPELAQTVAKECGGLP 166 (700)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 166 (700)
.-+++.-+ ..-.++..+++.++..|..
T Consensus 309 ~lhlG~tp---~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 309 KLHLGDTP---HVLTEQDFKELARKTEGYS 335 (439)
T ss_pred eeccCCCc---cccchhhHHHHHhhcCCCC
Confidence 76665432 2223566677777776653
No 270
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=93.36 E-value=0.11 Score=58.19 Aligned_cols=76 Identities=22% Similarity=0.337 Sum_probs=46.1
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcE-EE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKF-AL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~-Ll 79 (700)
+.|||||.||++++... .+.=+..+-+++++-... ..+.+-++.++ ..-..++ -..+-+..+++.| .+
T Consensus 529 PTGVGKTELAkaLA~~L---fg~e~aliR~DMSEy~Ek----HsVSrLIGaPP---GYVGyee-GG~LTEaVRr~PySVi 597 (786)
T COG0542 529 PTGVGKTELAKALAEAL---FGDEQALIRIDMSEYMEK----HSVSRLIGAPP---GYVGYEE-GGQLTEAVRRKPYSVI 597 (786)
T ss_pred CCcccHHHHHHHHHHHh---cCCCccceeechHHHHHH----HHHHHHhCCCC---CCceecc-ccchhHhhhcCCCeEE
Confidence 57999999999999997 443466676665543222 23334444332 2222222 3344455556665 88
Q ss_pred EEcCCCch
Q 005367 80 LLDDLWER 87 (700)
Q Consensus 80 VlDdv~~~ 87 (700)
.||.|+..
T Consensus 598 LlDEIEKA 605 (786)
T COG0542 598 LLDEIEKA 605 (786)
T ss_pred Eechhhhc
Confidence 89999765
No 271
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=93.32 E-value=0.76 Score=43.82 Aligned_cols=105 Identities=16% Similarity=0.129 Sum_probs=56.0
Q ss_pred cCcEEEEEcCCCch-------------hh----hh--hhcCcCCC--CcEEEEecCchhhhhcc-----cCcceEeccCC
Q 005367 74 KKKFALLLDDLWER-------------VD----LK--KIGVPLPK--NSAVVFTTRFVDVCGRM-----EARRTFKVECL 127 (700)
Q Consensus 74 ~~r~LlVlDdv~~~-------------~~----~~--~l~~~~~~--gs~iiiTTr~~~~~~~~-----~~~~~~~l~~L 127 (700)
....++++|.++-. +. ++ .....|.+ .-+||..|...+++... +-++.++.+--
T Consensus 263 kaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~P 342 (424)
T KOG0652|consen 263 KAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHP 342 (424)
T ss_pred cCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCC
Confidence 46799999987522 10 11 11244555 67788888777765332 23566777665
Q ss_pred ChHhHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCCchHHHHHHHHhcc
Q 005367 128 SDEAAWELFREKVGEETIESHHSIPELAQTVAKECGGLPLALITIGRAMAY 178 (700)
Q Consensus 128 ~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~ 178 (700)
+++.-.+++.-+.-..++...-+.+++++..-.--|.--.|+-+-|++++-
T Consensus 343 ne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiAL 393 (424)
T KOG0652|consen 343 NEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIAL 393 (424)
T ss_pred ChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHH
Confidence 555545555555544444455555555543322222223455555555543
No 272
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=93.30 E-value=0.35 Score=49.64 Aligned_cols=51 Identities=16% Similarity=0.107 Sum_probs=35.8
Q ss_pred CCCCcHHHHHHHHHhhccc---CCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCC
Q 005367 1 MGGVGKTTLLTQINNKFVD---NPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLC 52 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~ 52 (700)
.+|+|||+|+.+++-...- ..+.-..++||+....++++.+.+ ++++++..
T Consensus 134 ~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 134 EFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 3799999999998754311 122235889999999888887654 56666543
No 273
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=93.29 E-value=0.37 Score=49.42 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=34.0
Q ss_pred CCCCcHHHHHHHHHhhcccC---CCCCCEEEEEEeCCccCHHHHHHHHHHHcC
Q 005367 1 MGGVGKTTLLTQINNKFVDN---PTDFDYVIWVVVSKDLQLEKIQETIRKKIG 50 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~ 50 (700)
.+|+|||++|.+++...... ...-..++||+..+.++...+. ++++.++
T Consensus 110 ~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g 161 (317)
T PRK04301 110 EFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALG 161 (317)
T ss_pred CCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcC
Confidence 47999999999998775211 1112589999998888876654 4445554
No 274
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=93.19 E-value=0.27 Score=48.35 Aligned_cols=66 Identities=27% Similarity=0.355 Sum_probs=37.8
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
.+|+|||.||.+++++. .+..-.+.+++ ..+++..+...... ...+. .+...+ .+-=|||
T Consensus 113 ~~G~GKThLa~Ai~~~l---~~~g~sv~f~~------~~el~~~Lk~~~~~-------~~~~~---~l~~~l-~~~dlLI 172 (254)
T COG1484 113 PPGVGKTHLAIAIGNEL---LKAGISVLFIT------APDLLSKLKAAFDE-------GRLEE---KLLREL-KKVDLLI 172 (254)
T ss_pred CCCCcHHHHHHHHHHHH---HHcCCeEEEEE------HHHHHHHHHHHHhc-------CchHH---HHHHHh-hcCCEEE
Confidence 37999999999999998 33334555554 34445555555431 11111 111111 1223999
Q ss_pred EcCCCc
Q 005367 81 LDDLWE 86 (700)
Q Consensus 81 lDdv~~ 86 (700)
|||+--
T Consensus 173 iDDlG~ 178 (254)
T COG1484 173 IDDIGY 178 (254)
T ss_pred EecccC
Confidence 999954
No 275
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=93.05 E-value=2.3 Score=43.76 Aligned_cols=85 Identities=18% Similarity=0.163 Sum_probs=52.4
Q ss_pred cCcEEEEEcCCCchh--hhhhhcC---cCCCCcEEEEecCc-hhhhhcccC-cceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWERV--DLKKIGV---PLPKNSAVVFTTRF-VDVCGRMEA-RRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~~--~~~~l~~---~~~~gs~iiiTTr~-~~~~~~~~~-~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
+++-++|+|+++... ....+++ -.|++..+|.+|.+ ..+...+.+ -..+.+.+++.++..+.+... +. .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~~-~-- 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-GV-A-- 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-CC-C--
Confidence 455688999998662 3333333 23446666655544 444433322 257899999999999988764 11 1
Q ss_pred CCCChHHHHHHHHHHhCCCchHH
Q 005367 147 SHHSIPELAQTVAKECGGLPLAL 169 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~Plai 169 (700)
. ...++..++|.|...
T Consensus 207 -----~--~~~~l~~~~Gsp~~A 222 (342)
T PRK06964 207 -----D--ADALLAEAGGAPLAA 222 (342)
T ss_pred -----h--HHHHHHHcCCCHHHH
Confidence 1 223577889999654
No 276
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.05 E-value=0.26 Score=46.44 Aligned_cols=36 Identities=22% Similarity=0.249 Sum_probs=23.4
Q ss_pred CCCCcHHHHHHHHHhhcccCCCC-------CCEEEEEEeCCcc
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTD-------FDYVIWVVVSKDL 36 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~-------f~~~~wv~~~~~~ 36 (700)
.+|+|||+++.+++......... -..++|++.....
T Consensus 40 ~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 40 PPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp CSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred CCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 48999999999999887433322 2478899876663
No 277
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.03 E-value=0.83 Score=43.75 Aligned_cols=138 Identities=12% Similarity=0.144 Sum_probs=76.2
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTL-SKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~Ll 79 (700)
++|+|||.+|++++... +..| +-|.+ . + -|-+. .++-...++.+-++- +-..+++
T Consensus 159 ppGTGKTm~Akalane~---kvp~---l~vka--t----~---liGeh---------VGdgar~Ihely~rA~~~aPciv 214 (368)
T COG1223 159 PPGTGKTMMAKALANEA---KVPL---LLVKA--T----E---LIGEH---------VGDGARRIHELYERARKAAPCIV 214 (368)
T ss_pred CCCccHHHHHHHHhccc---CCce---EEech--H----H---HHHHH---------hhhHHHHHHHHHHHHHhcCCeEE
Confidence 58999999999999987 2222 11211 1 1 11111 111122222222222 2367999
Q ss_pred EEcCCCch--------------hhhhhhcCcC---CC--CcEEEEecCchhhhhcc-c--CcceEeccCCChHhHHHHHH
Q 005367 80 LLDDLWER--------------VDLKKIGVPL---PK--NSAVVFTTRFVDVCGRM-E--ARRTFKVECLSDEAAWELFR 137 (700)
Q Consensus 80 VlDdv~~~--------------~~~~~l~~~~---~~--gs~iiiTTr~~~~~~~~-~--~~~~~~l~~L~~~~a~~l~~ 137 (700)
++|.++-. +.+..++.-+ .. |-..|-.|.++++++.. + -...++..--+++|-.+++.
T Consensus 215 FiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile 294 (368)
T COG1223 215 FIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILE 294 (368)
T ss_pred EehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHH
Confidence 99988533 1122222111 12 66677778877776543 2 24567777778899999999
Q ss_pred HHhcccccCCCCChHHHHHHHHHHhCCCc
Q 005367 138 EKVGEETIESHHSIPELAQTVAKECGGLP 166 (700)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 166 (700)
.++..-+... +...+.++.+.+|+.
T Consensus 295 ~y~k~~Plpv----~~~~~~~~~~t~g~S 319 (368)
T COG1223 295 YYAKKFPLPV----DADLRYLAAKTKGMS 319 (368)
T ss_pred HHHHhCCCcc----ccCHHHHHHHhCCCC
Confidence 8885433222 233566667777663
No 278
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.97 E-value=0.27 Score=45.42 Aligned_cols=83 Identities=16% Similarity=0.122 Sum_probs=42.0
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCCC-CCCCCccHHHHHH-HHHHHhccCcE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIRKKIGLCN-DSWKNKSLEEKAQ-DIFKTLSKKKF 77 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~-~l~~~l~~~r~ 77 (700)
++|+||||+++.++... .+.-..++.++..... ...+.+...++..+.+. ......+..+... .+.....+..-
T Consensus 8 ~~G~GKTt~~~~la~~~---~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 84 (173)
T cd03115 8 LQGVGKTTTAAKLALYL---KKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREENFD 84 (173)
T ss_pred CCCCCHHHHHHHHHHHH---HHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHhCCCC
Confidence 58999999999999887 2222344555543322 23333444444444321 1112234444443 33333343444
Q ss_pred EEEEcCCCc
Q 005367 78 ALLLDDLWE 86 (700)
Q Consensus 78 LlVlDdv~~ 86 (700)
++|+|-.-.
T Consensus 85 ~viiDt~g~ 93 (173)
T cd03115 85 VVIVDTAGR 93 (173)
T ss_pred EEEEECccc
Confidence 666886543
No 279
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=92.96 E-value=0.21 Score=46.23 Aligned_cols=109 Identities=17% Similarity=0.101 Sum_probs=55.3
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHH--HH--cCCC--CCCCCC----ccHHHHHHHHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIR--KK--IGLC--NDSWKN----KSLEEKAQDIFKT 71 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~--~~--~~~~--~~~~~~----~~~~~~~~~l~~~ 71 (700)
.|-|||+.|..++.+.......--.+-|+.-....+-...+..+- .. .+.. ...... ....+.....++.
T Consensus 31 ~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~~~~~a~~~ 110 (191)
T PRK05986 31 NGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAAREGWEEAKRM 110 (191)
T ss_pred CCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHHHHHHHHHHH
Confidence 589999999999998732222223334444331222222222210 00 0110 000011 1111233334455
Q ss_pred hccCc-EEEEEcCCCch--------hhhhhhcCcCCCCcEEEEecCch
Q 005367 72 LSKKK-FALLLDDLWER--------VDLKKIGVPLPKNSAVVFTTRFV 110 (700)
Q Consensus 72 l~~~r-~LlVlDdv~~~--------~~~~~l~~~~~~gs~iiiTTr~~ 110 (700)
+...+ =++|||.+-.. +++-++...-|++.-||+|-|+.
T Consensus 111 l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 111 LADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 54444 59999998533 44444445556688999999974
No 280
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.79 E-value=0.28 Score=45.91 Aligned_cols=32 Identities=22% Similarity=0.133 Sum_probs=24.7
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCc
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD 35 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~ 35 (700)
.+|+|||++|.+++... .+.-..++|++..++
T Consensus 7 ~~G~GKT~l~~~~~~~~---~~~g~~v~~~s~e~~ 38 (187)
T cd01124 7 GPGTGKTTFALQFLYAG---LARGEPGLYVTLEES 38 (187)
T ss_pred CCCCCHHHHHHHHHHHH---HHCCCcEEEEECCCC
Confidence 48999999999998887 344567888876544
No 281
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=92.74 E-value=0.93 Score=49.86 Aligned_cols=121 Identities=17% Similarity=0.102 Sum_probs=69.4
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
++|+|||.||++++... +..|-.+-.- .+.... ...+.....+.+....+...+.|+
T Consensus 284 pPGtGKT~lAkava~~~---~~~fi~v~~~-------------~l~sk~-------vGesek~ir~~F~~A~~~~p~iiF 340 (494)
T COG0464 284 PPGTGKTLLAKAVALES---RSRFISVKGS-------------ELLSKW-------VGESEKNIRELFEKARKLAPSIIF 340 (494)
T ss_pred CCCCCHHHHHHHHHhhC---CCeEEEeeCH-------------HHhccc-------cchHHHHHHHHHHHHHcCCCcEEE
Confidence 68999999999999966 3344333211 111111 122222233333333346789999
Q ss_pred EcCCCchhh-------------hhhhcCc---CCC--CcEEEEecCchhhhhcc-----cCcceEeccCCChHhHHHHHH
Q 005367 81 LDDLWERVD-------------LKKIGVP---LPK--NSAVVFTTRFVDVCGRM-----EARRTFKVECLSDEAAWELFR 137 (700)
Q Consensus 81 lDdv~~~~~-------------~~~l~~~---~~~--gs~iiiTTr~~~~~~~~-----~~~~~~~l~~L~~~~a~~l~~ 137 (700)
||.++.... +..+... +.. +-.||-||..++..... +-+..+.++.-+.++..+.|.
T Consensus 341 iDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~ 420 (494)
T COG0464 341 IDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFK 420 (494)
T ss_pred EEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHH
Confidence 999964421 1122122 222 33345566655554321 225689999999999999999
Q ss_pred HHhcccc
Q 005367 138 EKVGEET 144 (700)
Q Consensus 138 ~~~~~~~ 144 (700)
.+.....
T Consensus 421 ~~~~~~~ 427 (494)
T COG0464 421 IHLRDKK 427 (494)
T ss_pred HHhcccC
Confidence 9986433
No 282
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.70 E-value=1.1 Score=48.71 Aligned_cols=139 Identities=14% Similarity=0.157 Sum_probs=79.7
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccC-cEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKK-KFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-r~Ll 79 (700)
++|+|||-+|++|+++. . ...+.++. -++++.+. ......+.+.+.+....+ +.++
T Consensus 226 ppg~Gkt~l~~aVa~e~---~---a~~~~i~~----------peli~k~~-------gEte~~LR~~f~~a~k~~~psii 282 (693)
T KOG0730|consen 226 PPGTGKTFLVRAVANEY---G---AFLFLING----------PELISKFP-------GETESNLRKAFAEALKFQVPSII 282 (693)
T ss_pred CCCCChHHHHHHHHHHh---C---ceeEeccc----------HHHHHhcc-------cchHHHHHHHHHHHhccCCCeeE
Confidence 58999999999999997 2 11222221 13444442 233445566666666677 8888
Q ss_pred EEcCCCch---------------hhhhhhcCcCCCCcE--EEEecCchhhhhc-c---cCcceEeccCCChHhHHHHHHH
Q 005367 80 LLDDLWER---------------VDLKKIGVPLPKNSA--VVFTTRFVDVCGR-M---EARRTFKVECLSDEAAWELFRE 138 (700)
Q Consensus 80 VlDdv~~~---------------~~~~~l~~~~~~gs~--iiiTTr~~~~~~~-~---~~~~~~~l~~L~~~~a~~l~~~ 138 (700)
.+|+++.. .++..+....++.++ ||-|||.++-..- . +.++.++++--+..+-.+.+..
T Consensus 283 ~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~ 362 (693)
T KOG0730|consen 283 FIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRV 362 (693)
T ss_pred eHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHH
Confidence 99888644 123334444444333 3346666554321 2 2345677777777766666665
Q ss_pred HhcccccCCCCChHHHHHHHHHHhCCCc
Q 005367 139 KVGEETIESHHSIPELAQTVAKECGGLP 166 (700)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~i~~~~~g~P 166 (700)
........ .......++..+.|.-
T Consensus 363 l~k~~~~~----~~~~l~~iA~~thGyv 386 (693)
T KOG0730|consen 363 LTKKMNLL----SDVDLEDIAVSTHGYV 386 (693)
T ss_pred HHHhcCCc----chhhHHHHHHHccchh
Confidence 55332211 2355666777777764
No 283
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.69 E-value=0.055 Score=30.43 Aligned_cols=19 Identities=26% Similarity=0.543 Sum_probs=10.5
Q ss_pred cceeccccCcccccchhhh
Q 005367 400 LQLLDISYTRVRELPEELK 418 (700)
Q Consensus 400 L~~L~l~~~~l~~lp~~~~ 418 (700)
|++|++++|+++.+|..++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5555666665555555443
No 284
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.49 E-value=1.1 Score=50.23 Aligned_cols=141 Identities=16% Similarity=0.166 Sum_probs=82.4
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTL-SKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~Ll 79 (700)
++|+|||-||++++-.. .+=|+.++.+ +..+.+.... ...+..+...- .+..+++
T Consensus 352 PPGTGKTLLAKAiAGEA--------gVPF~svSGS--------EFvE~~~g~~--------asrvr~lf~~ar~~aP~ii 407 (774)
T KOG0731|consen 352 PPGTGKTLLAKAIAGEA--------GVPFFSVSGS--------EFVEMFVGVG--------ASRVRDLFPLARKNAPSII 407 (774)
T ss_pred CCCCcHHHHHHHHhccc--------CCceeeechH--------HHHHHhcccc--------hHHHHHHHHHhhccCCeEE
Confidence 68999999999999997 2323333322 2233332111 12233333322 2467889
Q ss_pred EEcCCCchhh-----------------hhhhcC---cCCCC--cEEEEecCchhhhhcc-----cCcceEeccCCChHhH
Q 005367 80 LLDDLWERVD-----------------LKKIGV---PLPKN--SAVVFTTRFVDVCGRM-----EARRTFKVECLSDEAA 132 (700)
Q Consensus 80 VlDdv~~~~~-----------------~~~l~~---~~~~g--s~iiiTTr~~~~~~~~-----~~~~~~~l~~L~~~~a 132 (700)
.+|+++...- +..+.. .|..+ -.+|-+|+..++.+.. +-++.+.++.-+...-
T Consensus 408 fideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r 487 (774)
T KOG0731|consen 408 FIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGR 487 (774)
T ss_pred EecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhh
Confidence 9888864411 222211 12222 2334467777775432 2367888998899999
Q ss_pred HHHHHHHhcccccCCCCChHHHHHHHHHHhCCCchH
Q 005367 133 WELFREKVGEETIESHHSIPELAQTVAKECGGLPLA 168 (700)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 168 (700)
.++|.-++.... ...+..++.. |+...-|++=|
T Consensus 488 ~~i~~~h~~~~~--~~~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 488 ASILKVHLRKKK--LDDEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred HHHHHHHhhccC--CCcchhhHHH-HHhcCCCCcHH
Confidence 999998885433 2234456666 99999888744
No 285
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.44 E-value=0.3 Score=50.89 Aligned_cols=74 Identities=22% Similarity=0.356 Sum_probs=41.8
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCC---CCccHHHHHHHHHHHhccCcEE
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSW---KNKSLEEKAQDIFKTLSKKKFA 78 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~~r~L 78 (700)
+|+|||+|+.+++... ......++||+..+. ..+ +..-+++++...+.. ...+.++..+.+. +.+.-+
T Consensus 91 pG~GKStLllq~a~~~---a~~g~~VlYvs~EEs--~~q-i~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~---~~~~~l 161 (372)
T cd01121 91 PGIGKSTLLLQVAARL---AKRGGKVLYVSGEES--PEQ-IKLRADRLGISTENLYLLAETNLEDILASIE---ELKPDL 161 (372)
T ss_pred CCCCHHHHHHHHHHHH---HhcCCeEEEEECCcC--HHH-HHHHHHHcCCCcccEEEEccCcHHHHHHHHH---hcCCcE
Confidence 7999999999999887 333357888876543 232 233345555432211 1123333333332 234567
Q ss_pred EEEcCC
Q 005367 79 LLLDDL 84 (700)
Q Consensus 79 lVlDdv 84 (700)
+|+|.+
T Consensus 162 VVIDSI 167 (372)
T cd01121 162 VIIDSI 167 (372)
T ss_pred EEEcch
Confidence 888887
No 286
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.40 E-value=0.45 Score=46.26 Aligned_cols=102 Identities=21% Similarity=0.201 Sum_probs=56.8
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCC--------------------C--CCC
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCND--------------------S--WKN 58 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~--------------------~--~~~ 58 (700)
.+|+|||++|.+++... -..-+.++|++..... .++.+. +++++...+ . ...
T Consensus 28 ~~G~GKT~l~~~~~~~~---~~~g~~~~~is~e~~~--~~i~~~-~~~~g~~~~~~~~~~~l~i~d~~~~~~~~~~~~~~ 101 (229)
T TIGR03881 28 EPGTGKTIFCLHFAYKG---LRDGDPVIYVTTEESR--ESIIRQ-AAQFGMDFEKAIEEGKLVIIDALMKEKEDEWSLRE 101 (229)
T ss_pred CCCCChHHHHHHHHHHH---HhcCCeEEEEEccCCH--HHHHHH-HHHhCCCHHHHhhcCCEEEEEcccccccccccccc
Confidence 37999999999988765 2335678899865443 333222 333322100 0 012
Q ss_pred ccHHHHHHHHHHHhcc---CcEEEEEcCCCch-----hh----hhhhcCcCC-CCcEEEEecC
Q 005367 59 KSLEEKAQDIFKTLSK---KKFALLLDDLWER-----VD----LKKIGVPLP-KNSAVVFTTR 108 (700)
Q Consensus 59 ~~~~~~~~~l~~~l~~---~r~LlVlDdv~~~-----~~----~~~l~~~~~-~gs~iiiTTr 108 (700)
.+.++....+++..+. +.-.+|+|.+... .. ...+...+. .|..+|+|+.
T Consensus 102 ~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~ 164 (229)
T TIGR03881 102 LSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQ 164 (229)
T ss_pred CCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 3456666666665543 3458899988533 11 112222222 2888888876
No 287
>CHL00206 ycf2 Ycf2; Provisional
Probab=92.37 E-value=1.5 Score=54.07 Aligned_cols=17 Identities=18% Similarity=0.292 Sum_probs=15.9
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+|||.||+++|.+.
T Consensus 1638 PPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1638 SIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 58999999999999996
No 288
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=92.36 E-value=0.76 Score=41.80 Aligned_cols=54 Identities=11% Similarity=0.089 Sum_probs=29.2
Q ss_pred cCcEEEEEcCCCch--hhhhhhcC---cCCCCcEEEEecCchhh-hhcccC-cceEeccCC
Q 005367 74 KKKFALLLDDLWER--VDLKKIGV---PLPKNSAVVFTTRFVDV-CGRMEA-RRTFKVECL 127 (700)
Q Consensus 74 ~~r~LlVlDdv~~~--~~~~~l~~---~~~~gs~iiiTTr~~~~-~~~~~~-~~~~~l~~L 127 (700)
+++=.+||||++.. +....++. -.+.+..+|++|++.+- ...+.+ -..+.+.++
T Consensus 101 ~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp SSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE---
T ss_pred CCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCCC
Confidence 45679999999876 33344433 34558888888876553 332222 234555554
No 289
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=92.27 E-value=3.6 Score=41.47 Aligned_cols=90 Identities=18% Similarity=0.121 Sum_probs=54.9
Q ss_pred cCcEEEEEcCCCchhh--h---hhhcCcCCCCcEEEEecCc-hhhhhccc-CcceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWERVD--L---KKIGVPLPKNSAVVFTTRF-VDVCGRME-ARRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~~~--~---~~l~~~~~~gs~iiiTTr~-~~~~~~~~-~~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
+++-++|+|+++...+ . -....-.|+++.+|++|.+ ..+...+. ....+++.++++++..+.+... + ..
T Consensus 89 ~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~-~-~~-- 164 (299)
T PRK07132 89 SQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK-N-KE-- 164 (299)
T ss_pred CCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc-C-CC--
Confidence 4777899999876532 2 2233334557777765544 33333322 2467899999999998877653 1 11
Q ss_pred CCCChHHHHHHHHHHhCCCchHHHHH
Q 005367 147 SHHSIPELAQTVAKECGGLPLALITI 172 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~Plai~~~ 172 (700)
++.+..++...+|.-.|+..+
T Consensus 165 -----~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 165 -----KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred -----hhHHHHHHHHcCCHHHHHHHH
Confidence 455667777777744565554
No 290
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=92.18 E-value=0.62 Score=46.18 Aligned_cols=107 Identities=15% Similarity=0.057 Sum_probs=58.6
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCC------CCCccHHHHHHHHHHHhc-
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDS------WKNKSLEEKAQDIFKTLS- 73 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~l~~~l~- 73 (700)
..|.|||||.+.++... ......+++.-..-... +...+++..+....+. ...... .....+...+.
T Consensus 119 ~~g~GKttl~~~l~~~~----~~~~G~i~~~g~~v~~~-d~~~ei~~~~~~~~q~~~~~r~~v~~~~-~k~~~~~~~i~~ 192 (270)
T TIGR02858 119 PPQCGKTTLLRDLARIL----STGISQLGLRGKKVGIV-DERSEIAGCVNGVPQHDVGIRTDVLDGC-PKAEGMMMLIRS 192 (270)
T ss_pred CCCCCHHHHHHHHhCcc----CCCCceEEECCEEeecc-hhHHHHHHHhcccccccccccccccccc-hHHHHHHHHHHh
Confidence 47999999999999887 23344444431111101 1112333333211111 011111 11222333333
Q ss_pred cCcEEEEEcCCCchhhhhhhcCcCCCCcEEEEecCchhhh
Q 005367 74 KKKFALLLDDLWERVDLKKIGVPLPKNSAVVFTTRFVDVC 113 (700)
Q Consensus 74 ~~r~LlVlDdv~~~~~~~~l~~~~~~gs~iiiTTr~~~~~ 113 (700)
...=++|+|.+...+.+..+...+..|..||+||-+.++.
T Consensus 193 ~~P~villDE~~~~e~~~~l~~~~~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 193 MSPDVIVVDEIGREEDVEALLEALHAGVSIIATAHGRDVE 232 (270)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEechhHHH
Confidence 4778999999988877777666555688899999765553
No 291
>CHL00095 clpC Clp protease ATP binding subunit
Probab=92.13 E-value=0.39 Score=56.12 Aligned_cols=76 Identities=24% Similarity=0.273 Sum_probs=39.4
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccC-cEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKK-KFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-r~Ll 79 (700)
+.|+|||+||+.+++.. .+.-+..+-+++++-.+... +.+.++.+. .....++ ...+...++.+ ..++
T Consensus 547 p~GvGKt~lA~~LA~~l---~~~~~~~~~~d~s~~~~~~~----~~~l~g~~~---gyvg~~~-~~~l~~~~~~~p~~Vv 615 (821)
T CHL00095 547 PTGVGKTELTKALASYF---FGSEDAMIRLDMSEYMEKHT----VSKLIGSPP---GYVGYNE-GGQLTEAVRKKPYTVV 615 (821)
T ss_pred CCCCcHHHHHHHHHHHh---cCCccceEEEEchhcccccc----HHHhcCCCC---cccCcCc-cchHHHHHHhCCCeEE
Confidence 57999999999999886 33234455555544322111 112222211 1111111 11233334333 4699
Q ss_pred EEcCCCch
Q 005367 80 LLDDLWER 87 (700)
Q Consensus 80 VlDdv~~~ 87 (700)
+||+++..
T Consensus 616 llDeieka 623 (821)
T CHL00095 616 LFDEIEKA 623 (821)
T ss_pred EECChhhC
Confidence 99999765
No 292
>PRK06762 hypothetical protein; Provisional
Probab=92.12 E-value=1.9 Score=39.32 Aligned_cols=17 Identities=35% Similarity=0.630 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|++++.+.
T Consensus 10 ~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 10 NSGSGKTTIAKQLQERL 26 (166)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999999886
No 293
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=92.05 E-value=0.58 Score=51.45 Aligned_cols=122 Identities=18% Similarity=0.259 Sum_probs=63.9
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh---ccCcE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTL---SKKKF 77 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l---~~~r~ 77 (700)
+||+|||+|++.+++-. .+.|-. +.++.-.|-.++ -. +..--+-.+-.++.+.+ +.+.=
T Consensus 358 PPGVGKTSLgkSIA~al---~RkfvR---~sLGGvrDEAEI----RG--------HRRTYIGamPGrIiQ~mkka~~~NP 419 (782)
T COG0466 358 PPGVGKTSLGKSIAKAL---GRKFVR---ISLGGVRDEAEI----RG--------HRRTYIGAMPGKIIQGMKKAGVKNP 419 (782)
T ss_pred CCCCCchhHHHHHHHHh---CCCEEE---EecCccccHHHh----cc--------ccccccccCChHHHHHHHHhCCcCC
Confidence 68999999999999987 444422 223332222221 00 01111112222233333 34567
Q ss_pred EEEEcCCCch---------hhhhhhcCc-----CCC--------CcEE-EEecCc-hh-h-hhcccCcceEeccCCChHh
Q 005367 78 ALLLDDLWER---------VDLKKIGVP-----LPK--------NSAV-VFTTRF-VD-V-CGRMEARRTFKVECLSDEA 131 (700)
Q Consensus 78 LlVlDdv~~~---------~~~~~l~~~-----~~~--------gs~i-iiTTr~-~~-~-~~~~~~~~~~~l~~L~~~~ 131 (700)
+++||.++.. .++-+++.| |.. =|.| .|+|-| -+ + +...+.-.++++.+.+++|
T Consensus 420 v~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~E 499 (782)
T COG0466 420 VFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDE 499 (782)
T ss_pred eEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeeecCCChHH
Confidence 9999999644 112222222 111 2444 455543 11 1 1112334789999999999
Q ss_pred HHHHHHHHh
Q 005367 132 AWELFREKV 140 (700)
Q Consensus 132 a~~l~~~~~ 140 (700)
-.+.-+++.
T Consensus 500 Kl~IAk~~L 508 (782)
T COG0466 500 KLEIAKRHL 508 (782)
T ss_pred HHHHHHHhc
Confidence 888877776
No 294
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.03 E-value=0.98 Score=42.66 Aligned_cols=60 Identities=13% Similarity=0.238 Sum_probs=40.5
Q ss_pred HHHHHHHHHhccCcEEEEEcCCCchhhhhhhcCc-------CCCCcEEEEecCchhhhhcccCcceE
Q 005367 63 EKAQDIFKTLSKKKFALLLDDLWERVDLKKIGVP-------LPKNSAVVFTTRFVDVCGRMEARRTF 122 (700)
Q Consensus 63 ~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~l~~~-------~~~gs~iiiTTr~~~~~~~~~~~~~~ 122 (700)
-...++.+.+-=+.-+.|||.-++--+++.++.. -.+|+.++|.|-.+.++..+.++.+|
T Consensus 150 kKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 150 KKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 3344555555556779999998877666555332 22378888888888998887665554
No 295
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=91.87 E-value=0.32 Score=56.72 Aligned_cols=29 Identities=21% Similarity=0.184 Sum_probs=20.2
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEe
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVV 32 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~ 32 (700)
++|+|||.+|+++++.. .+..+..+-+++
T Consensus 604 p~GvGKT~lA~~La~~l---~~~~~~~~~~dm 632 (852)
T TIGR03345 604 PSGVGKTETALALAELL---YGGEQNLITINM 632 (852)
T ss_pred CCCCCHHHHHHHHHHHH---hCCCcceEEEeH
Confidence 57999999999998887 333334444443
No 296
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.81 E-value=0.0065 Score=56.48 Aligned_cols=87 Identities=16% Similarity=0.122 Sum_probs=67.7
Q ss_pred CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccccccccceeccccCcccccchhhhcCCCCC
Q 005367 345 TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQLLDISYTRVRELPEELKALVNLR 424 (700)
Q Consensus 345 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~ 424 (700)
.+..+...++||++.|.+..+... |+.+..|..|+++.| .+..+|..+++...++.+++..|..++.|.+.+..++++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPK 114 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcc
Confidence 456667778888888876666555 566777778888877 677788888888888888888888888888888888888
Q ss_pred EEecccccC
Q 005367 425 CLNLDWAGE 433 (700)
Q Consensus 425 ~L~l~~~~~ 433 (700)
.++..++..
T Consensus 115 ~~e~k~~~~ 123 (326)
T KOG0473|consen 115 KNEQKKTEF 123 (326)
T ss_pred hhhhccCcc
Confidence 888887753
No 297
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=91.70 E-value=1 Score=52.29 Aligned_cols=17 Identities=41% Similarity=0.507 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+|||++|+.++...
T Consensus 355 ppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 355 PPGVGKTSLGKSIAKAL 371 (775)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999999987
No 298
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=91.51 E-value=0.53 Score=46.30 Aligned_cols=87 Identities=14% Similarity=0.153 Sum_probs=51.6
Q ss_pred CCCcHHHHHHHHHhhcc-cCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCCC-----CCCCCccHHH-----HHHHHH
Q 005367 2 GGVGKTTLLTQINNKFV-DNPTDFDYVIWVVVSKDL-QLEKIQETIRKKIGLCN-----DSWKNKSLEE-----KAQDIF 69 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~-~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~-----~~~~~~~~~~-----~~~~l~ 69 (700)
+|+|||+|+.+++++.. ..+++-+.++++-+++.. ...++.+.+.+.-.... ...+..-... ..-.+.
T Consensus 78 ~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a~~~a~aiA 157 (276)
T cd01135 78 SGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIITPRMALTTA 157 (276)
T ss_pred CCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 69999999999988761 012345788888888776 46777777666432111 1111111111 111233
Q ss_pred HHh---ccCcEEEEEcCCCchh
Q 005367 70 KTL---SKKKFALLLDDLWERV 88 (700)
Q Consensus 70 ~~l---~~~r~LlVlDdv~~~~ 88 (700)
+.+ .++++|+|+||+....
T Consensus 158 Eyfrd~~g~~VLl~~D~ltr~A 179 (276)
T cd01135 158 EYLAYEKGKHVLVILTDMTNYA 179 (276)
T ss_pred HHHHhccCCeEEEEEcChhHHH
Confidence 443 3689999999996553
No 299
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=91.47 E-value=3.1 Score=45.83 Aligned_cols=134 Identities=17% Similarity=0.170 Sum_probs=83.6
Q ss_pred CCCcHHHHHHHHHhhccc-----CCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhc---
Q 005367 2 GGVGKTTLLTQINNKFVD-----NPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLS--- 73 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~-----~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~--- 73 (700)
+|+|||+.+..|.+.... .-..|++ +.|++-.-..+.++...|+.++.. ....+......+..+..
T Consensus 431 PGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l~~~~~~Y~~I~~~lsg-----~~~~~~~al~~L~~~f~~~k 504 (767)
T KOG1514|consen 431 PGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRLASPREIYEKIWEALSG-----ERVTWDAALEALNFRFTVPK 504 (767)
T ss_pred CCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceeecCHHHHHHHHHHhccc-----CcccHHHHHHHHHHhhccCC
Confidence 799999999999886421 1124544 457777777899999999999976 34556666666666664
Q ss_pred --cCcEEEEEcCCCch-----hhhhhhcCc-CCCCcEEEEec--Cchhhhhc-----cc---CcceEeccCCChHhHHHH
Q 005367 74 --KKKFALLLDDLWER-----VDLKKIGVP-LPKNSAVVFTT--RFVDVCGR-----ME---ARRTFKVECLSDEAAWEL 135 (700)
Q Consensus 74 --~~r~LlVlDdv~~~-----~~~~~l~~~-~~~gs~iiiTT--r~~~~~~~-----~~---~~~~~~l~~L~~~~a~~l 135 (700)
.+.+++++|+++.. +.+-.+... --++++++|-+ ..-+.-+. .. .-..+..++.++++-.+.
T Consensus 505 ~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~I 584 (767)
T KOG1514|consen 505 PKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEI 584 (767)
T ss_pred CCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHH
Confidence 35699999998654 223333332 22377765543 11111111 00 124667778888777777
Q ss_pred HHHHhc
Q 005367 136 FREKVG 141 (700)
Q Consensus 136 ~~~~~~ 141 (700)
+..+..
T Consensus 585 i~~RL~ 590 (767)
T KOG1514|consen 585 ISARLK 590 (767)
T ss_pred HHHhhc
Confidence 766653
No 300
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=91.43 E-value=0.71 Score=47.49 Aligned_cols=50 Identities=14% Similarity=0.147 Sum_probs=34.9
Q ss_pred CCCCcHHHHHHHHHhhccc---CCCCCCEEEEEEeCCccCHHHHHHHHHHHcCC
Q 005367 1 MGGVGKTTLLTQINNKFVD---NPTDFDYVIWVVVSKDLQLEKIQETIRKKIGL 51 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~ 51 (700)
.+|+|||++|.+++..... ..+.-..++||+....++.+.+ .+++++++.
T Consensus 131 ~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~ 183 (342)
T PLN03186 131 EFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGL 183 (342)
T ss_pred CCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCC
Confidence 3799999999998865311 1112237999999998888765 456777654
No 301
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=91.42 E-value=0.35 Score=42.03 Aligned_cols=92 Identities=13% Similarity=0.100 Sum_probs=46.4
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEEE
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALLL 81 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVl 81 (700)
||+||||+|.+++... ..-|+++++-..-.. +....... -....-+.+-+.+.+.-.+.+..+++=-
T Consensus 16 PG~GKstl~~~lae~~--------~~~~i~isd~vkEn~----l~~gyDE~-y~c~i~DEdkv~D~Le~~m~~Gg~IVDy 82 (176)
T KOG3347|consen 16 PGTGKSTLAERLAEKT--------GLEYIEISDLVKENN----LYEGYDEE-YKCHILDEDKVLDELEPLMIEGGNIVDY 82 (176)
T ss_pred CCCCchhHHHHHHHHh--------CCceEehhhHHhhhc----chhccccc-ccCccccHHHHHHHHHHHHhcCCcEEee
Confidence 7999999999999775 233555443222111 12222111 1113344555566666665555544433
Q ss_pred cCCCchhhhhhhcCcCCC---CcEEEEecCchhhhhcc
Q 005367 82 DDLWERVDLKKIGVPLPK---NSAVVFTTRFVDVCGRM 116 (700)
Q Consensus 82 Ddv~~~~~~~~l~~~~~~---gs~iiiTTr~~~~~~~~ 116 (700)
+.. ..||. .-.+++||-+..+-+++
T Consensus 83 HgC----------d~FperwfdlVvVLr~~~s~LY~RL 110 (176)
T KOG3347|consen 83 HGC----------DFFPERWFDLVVVLRTPNSVLYDRL 110 (176)
T ss_pred ccc----------CccchhheeEEEEEecCchHHHHHH
Confidence 332 23333 34456666655554444
No 302
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=91.25 E-value=0.38 Score=48.41 Aligned_cols=106 Identities=17% Similarity=0.199 Sum_probs=58.8
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEE----eCCc---------cCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVV----VSKD---------LQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDI 68 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~----~~~~---------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l 68 (700)
+|+|||.||.+..-.....++.|..++-.. +++. ..+.-..+.|...+..-... .... +..++.+
T Consensus 254 AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PWmq~i~DnLE~L~~~-~~~~-~~~l~~~ 331 (436)
T COG1875 254 AGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPWMQAIFDNLEVLFSP-NEPG-DRALEEI 331 (436)
T ss_pred CCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccchHHHHHhHHHHHhcc-cccc-hHHHHHH
Confidence 799999999886555433455665554332 2221 12223334444333211110 1111 2222222
Q ss_pred H--HH--------hcc---CcEEEEEcCCCch--hhhhhhcCcCCCCcEEEEecCc
Q 005367 69 F--KT--------LSK---KKFALLLDDLWER--VDLKKIGVPLPKNSAVVFTTRF 109 (700)
Q Consensus 69 ~--~~--------l~~---~r~LlVlDdv~~~--~~~~~l~~~~~~gs~iiiTTr~ 109 (700)
. .. .++ ..-++|+|.+.+. +++.-+....++|+||+.|---
T Consensus 332 l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTiltR~G~GsKIVl~gd~ 387 (436)
T COG1875 332 LSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTILTRAGEGSKIVLTGDP 387 (436)
T ss_pred HhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHHHhccCCCEEEEcCCH
Confidence 1 11 133 3468999999876 6788888888999999999864
No 303
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.16 E-value=2.5 Score=43.15 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=16.0
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+|||-||++|+...
T Consensus 253 PPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 253 PPGTGKTLLAKAVATEC 269 (491)
T ss_pred CCCCcHHHHHHHHHHhh
Confidence 68999999999999997
No 304
>PTZ00088 adenylate kinase 1; Provisional
Probab=91.13 E-value=0.32 Score=47.01 Aligned_cols=17 Identities=35% Similarity=0.423 Sum_probs=16.0
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.+++.+
T Consensus 14 ~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 14 APGVGKGTFAEILSKKE 30 (229)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999999997
No 305
>PTZ00035 Rad51 protein; Provisional
Probab=91.11 E-value=1 Score=46.38 Aligned_cols=50 Identities=18% Similarity=0.157 Sum_probs=33.3
Q ss_pred CCCCcHHHHHHHHHhhccc---CCCCCCEEEEEEeCCccCHHHHHHHHHHHcCC
Q 005367 1 MGGVGKTTLLTQINNKFVD---NPTDFDYVIWVVVSKDLQLEKIQETIRKKIGL 51 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~ 51 (700)
.+|+|||+|+.+++-.... ..+.-..++||+....++.+. +..++++++.
T Consensus 126 ~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~ 178 (337)
T PTZ00035 126 EFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGL 178 (337)
T ss_pred CCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCC
Confidence 3799999999998765410 112334678999877777766 4455666654
No 306
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=91.10 E-value=0.14 Score=44.03 Aligned_cols=17 Identities=29% Similarity=0.552 Sum_probs=15.9
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|++++++.
T Consensus 7 ~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 7 PPGSGKSTLAKELAERL 23 (121)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999999997
No 307
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=91.06 E-value=1.9 Score=46.59 Aligned_cols=90 Identities=12% Similarity=0.159 Sum_probs=59.5
Q ss_pred cCcEEEEEcCCCch--hhhhhhcCcC---CCCcEEEEecCchh-hhhcc-cCcceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWER--VDLKKIGVPL---PKNSAVVFTTRFVD-VCGRM-EARRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~--~~~~~l~~~~---~~gs~iiiTTr~~~-~~~~~-~~~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
++-=..|+|.|.-. ..+..++.-+ |+.-+.|..|++.. +-..+ ..-..|....++.++-...+...+..+++.
T Consensus 118 ~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~ 197 (515)
T COG2812 118 GRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGIN 197 (515)
T ss_pred ccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCc
Confidence 34458899999643 5566665543 33666665555433 21111 123679999999999999998888766544
Q ss_pred CCCChHHHHHHHHHHhCCCc
Q 005367 147 SHHSIPELAQTVAKECGGLP 166 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~P 166 (700)
.+ ++....|++..+|..
T Consensus 198 ~e---~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 198 IE---EDALSLIARAAEGSL 214 (515)
T ss_pred cC---HHHHHHHHHHcCCCh
Confidence 44 788888888888754
No 308
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.00 E-value=0.42 Score=52.43 Aligned_cols=64 Identities=22% Similarity=0.323 Sum_probs=46.9
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh--ccCcEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTL--SKKKFA 78 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~~r~L 78 (700)
++|+||||||.-++++. .| .|+=|++++..+...+-..|...+.... .+ .++..=
T Consensus 334 ppGlGKTTLAHViAkqa-----GY-sVvEINASDeRt~~~v~~kI~~avq~~s-----------------~l~adsrP~C 390 (877)
T KOG1969|consen 334 PPGLGKTTLAHVIAKQA-----GY-SVVEINASDERTAPMVKEKIENAVQNHS-----------------VLDADSRPVC 390 (877)
T ss_pred CCCCChhHHHHHHHHhc-----Cc-eEEEecccccccHHHHHHHHHHHHhhcc-----------------ccccCCCcce
Confidence 58999999999999986 33 5677889998888887777777664322 12 146667
Q ss_pred EEEcCCCch
Q 005367 79 LLLDDLWER 87 (700)
Q Consensus 79 lVlDdv~~~ 87 (700)
||+|.++-.
T Consensus 391 LViDEIDGa 399 (877)
T KOG1969|consen 391 LVIDEIDGA 399 (877)
T ss_pred EEEecccCC
Confidence 888888654
No 309
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=90.98 E-value=0.54 Score=43.82 Aligned_cols=17 Identities=35% Similarity=0.417 Sum_probs=15.9
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+++++++
T Consensus 7 ~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 7 GPGSGKGTQCAKIVENF 23 (183)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 58999999999999987
No 310
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=90.92 E-value=0.8 Score=44.54 Aligned_cols=111 Identities=14% Similarity=0.090 Sum_probs=67.5
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC-----ccCHHHHHHHHHHHcCCCCCC-----CCCccHHHHHHHHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK-----DLQLEKIQETIRKKIGLCNDS-----WKNKSLEEKAQDIFKT 71 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~l~~~ 71 (700)
+|+||||+|+.+..-. +.-.+.+++...+ .....+...++++.++.+... +.-..-+...-.+.+.
T Consensus 48 SG~GKSTlgr~i~~L~----~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARA 123 (268)
T COG4608 48 SGCGKSTLGRLILGLE----EPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARA 123 (268)
T ss_pred CCCCHHHHHHHHHcCc----CCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHH
Confidence 6999999999998876 2233344443211 233455677777777654311 1222333334457778
Q ss_pred hccCcEEEEEcCCCch------hhhhhhcCcCCC--CcEEEEecCchhhhhcc
Q 005367 72 LSKKKFALLLDDLWER------VDLKKIGVPLPK--NSAVVFTTRFVDVCGRM 116 (700)
Q Consensus 72 l~~~r~LlVlDdv~~~------~~~~~l~~~~~~--gs~iiiTTr~~~~~~~~ 116 (700)
|.-+.-++|.|.--+. .++-.+...++. |-..+..|-+-.++..+
T Consensus 124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhh
Confidence 8888999999976444 333333333333 77788888777776655
No 311
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=90.88 E-value=1 Score=44.58 Aligned_cols=81 Identities=15% Similarity=0.042 Sum_probs=49.1
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHH---HHHhccCcE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDI---FKTLSKKKF 77 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l---~~~l~~~r~ 77 (700)
+.|.|||++|-+++-.. ......++||+..+.++++......-..+..-. -..+.+.++....+ .....++--
T Consensus 68 ~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~-v~~~~~~e~q~~i~~~~~~~~~~~i~ 143 (279)
T COG0468 68 PESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAKQLGVDLLDNLL-VSQPDTGEQQLEIAEKLARSGAEKID 143 (279)
T ss_pred CCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHHHHHHhhhccee-EecCCCHHHHHHHHHHHHHhccCCCC
Confidence 47999999999988887 444558999999998888766443333121100 01233333333332 222233356
Q ss_pred EEEEcCCC
Q 005367 78 ALLLDDLW 85 (700)
Q Consensus 78 LlVlDdv~ 85 (700)
|+|+|.+.
T Consensus 144 LvVVDSva 151 (279)
T COG0468 144 LLVVDSVA 151 (279)
T ss_pred EEEEecCc
Confidence 99999884
No 312
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=90.83 E-value=0.83 Score=44.33 Aligned_cols=40 Identities=18% Similarity=0.190 Sum_probs=25.7
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHH
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETI 45 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 45 (700)
.+|+|||++|.+++... .+.-..+++++.. .+..++.+.+
T Consensus 32 ~~G~GKTtl~~~~~~~~---~~~g~~~~yi~~e--~~~~~~~~~~ 71 (230)
T PRK08533 32 DESTGKSILSQRLAYGF---LQNGYSVSYVSTQ--LTTTEFIKQM 71 (230)
T ss_pred CCCCCHHHHHHHHHHHH---HhCCCcEEEEeCC--CCHHHHHHHH
Confidence 47999999998887765 1222556777633 3445555555
No 313
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.81 E-value=1.6 Score=44.23 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=19.3
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDY 26 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~ 26 (700)
++|+|||-||++++.+. ...|-.
T Consensus 135 PpG~GKTmlAKA~Akea---ga~fIn 157 (386)
T KOG0737|consen 135 PPGTGKTMLAKAIAKEA---GANFIN 157 (386)
T ss_pred CCCchHHHHHHHHHHHc---CCCcce
Confidence 68999999999999998 555543
No 314
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=90.81 E-value=1.7 Score=39.75 Aligned_cols=80 Identities=15% Similarity=0.246 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHcCCCCCC----CCCccHHHHHHHHHHHhccCcEEEEEc----CCCchhhhh--hhcCcCCC-CcEEEEe
Q 005367 38 LEKIQETIRKKIGLCNDS----WKNKSLEEKAQDIFKTLSKKKFALLLD----DLWERVDLK--KIGVPLPK-NSAVVFT 106 (700)
Q Consensus 38 ~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~r~LlVlD----dv~~~~~~~--~l~~~~~~-gs~iiiT 106 (700)
..+...+.++..+..... ..-..-++..-.|.+.+-++.-+|+-| |++....|+ .+...+.. |..||++
T Consensus 114 i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~A 193 (223)
T COG2884 114 IRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMA 193 (223)
T ss_pred HHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEE
Confidence 444455555555543311 122333445556777788888899998 455443333 33333433 9999999
Q ss_pred cCchhhhhccc
Q 005367 107 TRFVDVCGRME 117 (700)
Q Consensus 107 Tr~~~~~~~~~ 117 (700)
|-+.++...+.
T Consensus 194 THd~~lv~~~~ 204 (223)
T COG2884 194 THDLELVNRMR 204 (223)
T ss_pred eccHHHHHhcc
Confidence 99988877653
No 315
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=90.78 E-value=1 Score=45.97 Aligned_cols=50 Identities=18% Similarity=0.192 Sum_probs=33.5
Q ss_pred CCCCcHHHHHHHHHhhcc---cCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCC
Q 005367 1 MGGVGKTTLLTQINNKFV---DNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGL 51 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~---~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~ 51 (700)
.+|+|||+|+.+++.... ...+.-..++||+..+.++... +.++++.++.
T Consensus 104 ~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~ 156 (316)
T TIGR02239 104 EFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGL 156 (316)
T ss_pred CCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCC
Confidence 379999999999886431 0111234679999888777765 4556666654
No 316
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.71 E-value=0.77 Score=47.64 Aligned_cols=80 Identities=19% Similarity=0.164 Sum_probs=46.4
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCc-cCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD-LQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~Ll 79 (700)
+.|+||||++.+++.... .+.....+..|..... ....+.+....+.++.+... .....+....+. .+.++ -++
T Consensus 145 ptGvGKTTtiakLA~~~~-~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~--~~~~~~l~~~l~-~l~~~-DlV 219 (374)
T PRK14722 145 PTGVGKTTTTAKLAARCV-MRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA--VKDGGDLQLALA-ELRNK-HMV 219 (374)
T ss_pred CCCCCHHHHHHHHHHHHH-HhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEe--cCCcccHHHHHH-HhcCC-CEE
Confidence 479999999999998861 1112345666664442 34566667777777765421 222223333333 33444 566
Q ss_pred EEcCCC
Q 005367 80 LLDDLW 85 (700)
Q Consensus 80 VlDdv~ 85 (700)
++|..-
T Consensus 220 LIDTaG 225 (374)
T PRK14722 220 LIDTIG 225 (374)
T ss_pred EEcCCC
Confidence 699874
No 317
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=90.70 E-value=1.3 Score=50.82 Aligned_cols=17 Identities=35% Similarity=0.550 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+|||++|++++...
T Consensus 496 P~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 496 PTGVGKTEVTVQLSKAL 512 (758)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 57999999999999886
No 318
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=90.67 E-value=0.73 Score=48.91 Aligned_cols=83 Identities=17% Similarity=0.156 Sum_probs=43.1
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCCCCCC-CCccHHHHHHHHHHHhccCcE-
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIRKKIGLCNDSW-KNKSLEEKAQDIFKTLSKKKF- 77 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~r~- 77 (700)
++|+||||.|.+++.... .+.-..+.-|++.... ...+.+....++.+.+.-.. ...+..+......+....+.+
T Consensus 107 ~~GsGKTTtaakLA~~l~--~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~~~~D 184 (428)
T TIGR00959 107 LQGSGKTTTCGKLAYYLK--KKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKENGFD 184 (428)
T ss_pred CCCCcHHHHHHHHHHHHH--HhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHhcCCC
Confidence 479999999999988851 1122345555544322 23444555566665442111 122333444333333333444
Q ss_pred EEEEcCCC
Q 005367 78 ALLLDDLW 85 (700)
Q Consensus 78 LlVlDdv~ 85 (700)
++|+|-.-
T Consensus 185 vVIIDTaG 192 (428)
T TIGR00959 185 VVIVDTAG 192 (428)
T ss_pred EEEEeCCC
Confidence 77777653
No 319
>PRK05973 replicative DNA helicase; Provisional
Probab=90.51 E-value=1.1 Score=43.48 Aligned_cols=32 Identities=16% Similarity=0.062 Sum_probs=24.2
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCc
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD 35 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~ 35 (700)
.+|+|||++|.+++... ...-..+++++..+.
T Consensus 72 ~PG~GKT~lalqfa~~~---a~~Ge~vlyfSlEes 103 (237)
T PRK05973 72 RPGHGKTLLGLELAVEA---MKSGRTGVFFTLEYT 103 (237)
T ss_pred CCCCCHHHHHHHHHHHH---HhcCCeEEEEEEeCC
Confidence 37999999999998886 234566777776555
No 320
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=90.49 E-value=1.3 Score=47.09 Aligned_cols=80 Identities=21% Similarity=0.160 Sum_probs=44.2
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCc-cCHHHHHHHHHHHcCCCCCCC-CCccHHHHHHHHHHHhccCcEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD-LQLEKIQETIRKKIGLCNDSW-KNKSLEEKAQDIFKTLSKKKFA 78 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~r~L 78 (700)
++|+||||.|.+++... ...-..+.-|++... ....+.+..++++++.+.... ...+..+......+..... -+
T Consensus 103 ~~GsGKTTtaakLA~~L---~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~~~~-Dv 178 (437)
T PRK00771 103 LQGSGKTTTAAKLARYF---KKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFKKA-DV 178 (437)
T ss_pred CCCCcHHHHHHHHHHHH---HHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHhhcC-CE
Confidence 47999999999999887 222224444554332 234555667777776543211 1223333333333333333 56
Q ss_pred EEEcCC
Q 005367 79 LLLDDL 84 (700)
Q Consensus 79 lVlDdv 84 (700)
+|+|-.
T Consensus 179 VIIDTA 184 (437)
T PRK00771 179 IIVDTA 184 (437)
T ss_pred EEEECC
Confidence 778866
No 321
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=90.43 E-value=0.91 Score=44.02 Aligned_cols=39 Identities=28% Similarity=0.371 Sum_probs=28.9
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQE 43 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 43 (700)
||+||||+|..++... ...-..++-|++....+......
T Consensus 11 GGvGKTT~a~nLA~~l---a~~G~~VlliD~DpQ~s~~~w~~ 49 (231)
T PRK13849 11 GGAGKTTALMGLCAAL---ASDGKRVALFEADENRPLTRWKE 49 (231)
T ss_pred CCccHHHHHHHHHHHH---HhCCCcEEEEeCCCCCCHHHHHH
Confidence 8999999999998887 23334667778777777666543
No 322
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=90.38 E-value=0.88 Score=46.54 Aligned_cols=50 Identities=18% Similarity=0.170 Sum_probs=34.3
Q ss_pred CCCCcHHHHHHHHHhhcccC---CCCCCEEEEEEeCCccCHHHHHHHHHHHcCC
Q 005367 1 MGGVGKTTLLTQINNKFVDN---PTDFDYVIWVVVSKDLQLEKIQETIRKKIGL 51 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~ 51 (700)
.+|+|||+++.+++...... ...-..++||+..+.++...+. ++++.++.
T Consensus 103 ~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 103 EFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 47999999999998875210 1111389999998888877654 44555543
No 323
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=90.33 E-value=1 Score=42.43 Aligned_cols=100 Identities=19% Similarity=0.167 Sum_probs=56.3
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCC--EEEEEEeCCccCHHHH-----HHHHHHHcCCCCCCCCCccHHHHHHHHHHHhc
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFD--YVIWVVVSKDLQLEKI-----QETIRKKIGLCNDSWKNKSLEEKAQDIFKTLS 73 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 73 (700)
++|+|||||.|.+++-.+...+.|- .+.-|+-++. ...- +..+..++.+.+ .....+-+...++..
T Consensus 145 pP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersE--Iag~~~gvpq~~~g~R~dVld---~cpk~~gmmmaIrsm-- 217 (308)
T COG3854 145 PPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSE--IAGCLNGVPQHGRGRRMDVLD---PCPKAEGMMMAIRSM-- 217 (308)
T ss_pred CCCCChHHHHHHHHHHhhccccccCCceEEEEeccch--hhccccCCchhhhhhhhhhcc---cchHHHHHHHHHHhc--
Confidence 5899999999999998765555553 3343432221 1110 112222222211 111122222222222
Q ss_pred cCcEEEEEcCCCchhhhhhhcCcCCCCcEEEEecC
Q 005367 74 KKKFALLLDDLWERVDLKKIGVPLPKNSAVVFTTR 108 (700)
Q Consensus 74 ~~r~LlVlDdv~~~~~~~~l~~~~~~gs~iiiTTr 108 (700)
..=.+|.|.+-+.++...+..++..|-++|.|.-
T Consensus 218 -~PEViIvDEIGt~~d~~A~~ta~~~GVkli~TaH 251 (308)
T COG3854 218 -SPEVIIVDEIGTEEDALAILTALHAGVKLITTAH 251 (308)
T ss_pred -CCcEEEEeccccHHHHHHHHHHHhcCcEEEEeec
Confidence 4568899999999888887777777888777764
No 324
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=90.29 E-value=1.2 Score=44.63 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=29.9
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHH
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKK 48 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 48 (700)
.+|+|||++|.+++.... .++-..++|++...+ ..++...+...
T Consensus 38 ~~G~GKT~l~~~~~~~~~--~~~g~~vl~iS~E~~--~~~~~~r~~~~ 81 (271)
T cd01122 38 GTGVGKTTFLREYALDLI--TQHGVRVGTISLEEP--VVRTARRLLGQ 81 (271)
T ss_pred CCCCCHHHHHHHHHHHHH--HhcCceEEEEEcccC--HHHHHHHHHHH
Confidence 479999999999988862 222567889987664 34444444443
No 325
>PRK10867 signal recognition particle protein; Provisional
Probab=90.22 E-value=0.77 Score=48.79 Aligned_cols=48 Identities=21% Similarity=0.256 Sum_probs=28.1
Q ss_pred CCCCcHHHHHHHHHhhcccCCCC-CCEEEEEEeCCcc-CHHHHHHHHHHHcCC
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTD-FDYVIWVVVSKDL-QLEKIQETIRKKIGL 51 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~-f~~~~wv~~~~~~-~~~~~~~~i~~~~~~ 51 (700)
++|+||||.|.+++... ... -..+..|++.... ...+.+...+++.+.
T Consensus 108 ~~GsGKTTtaakLA~~l---~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv 157 (433)
T PRK10867 108 LQGAGKTTTAGKLAKYL---KKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGV 157 (433)
T ss_pred CCCCcHHHHHHHHHHHH---HHhcCCcEEEEEccccchHHHHHHHHHHhhcCC
Confidence 47999999999998877 232 3345555543322 223344455555543
No 326
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=90.22 E-value=0.62 Score=41.84 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=16.1
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+||+||||+|+.++.++
T Consensus 4 ~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 4 PPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHhc
Confidence 58999999999999998
No 327
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=90.19 E-value=3 Score=45.58 Aligned_cols=55 Identities=9% Similarity=0.116 Sum_probs=34.5
Q ss_pred cceEeccCCChHhHHHHHHHHhccc-----ccCCCCChHHHHHHHHHHh-CCCchHHHHHH
Q 005367 119 RRTFKVECLSDEAAWELFREKVGEE-----TIESHHSIPELAQTVAKEC-GGLPLALITIG 173 (700)
Q Consensus 119 ~~~~~l~~L~~~~a~~l~~~~~~~~-----~~~~~~~~~~~~~~i~~~~-~g~Plai~~~~ 173 (700)
...+...+.+..--.+.+.+.+..+ +....+...++.+.|++.+ |-+--||..+=
T Consensus 205 i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s~GDIRsAIn~LQ 265 (519)
T PF03215_consen 205 ITRIKFNPIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAESSNGDIRSAINNLQ 265 (519)
T ss_pred ceEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHHhcCchHHHHHHHHH
Confidence 3567888888877666666665433 1122334456678888887 55777765543
No 328
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=90.18 E-value=1.2 Score=44.16 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=25.4
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL 36 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~ 36 (700)
.+|+|||++|.+++... .+.-+.+++++..++.
T Consensus 44 ~pGtGKT~l~~qf~~~~---a~~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 44 VSDTGKSLMVEQFAVTQ---ASRGNPVLFVTVESPA 76 (259)
T ss_pred CCCCCHHHHHHHHHHHH---HhCCCcEEEEEecCCc
Confidence 47999999999998876 2345688888876544
No 329
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=90.16 E-value=0.95 Score=44.13 Aligned_cols=79 Identities=13% Similarity=0.170 Sum_probs=48.5
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCC------------------CCCccHH
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDS------------------WKNKSLE 62 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~------------------~~~~~~~ 62 (700)
.+|+|||++|.+++... .+.-..++|+...+. ..++.+.+ .+++..... ......+
T Consensus 33 ~~GsGKt~l~~~~~~~~---~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~~~~ 106 (234)
T PRK06067 33 DHGTGKSVLSQQFVYGA---LKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGFEWNSTLAN 106 (234)
T ss_pred CCCCChHHHHHHHHHHH---HhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccccccCcchHH
Confidence 37999999999998775 234678899987654 44444443 333321110 0122335
Q ss_pred HHHHHHHHHhcc-CcEEEEEcCCC
Q 005367 63 EKAQDIFKTLSK-KKFALLLDDLW 85 (700)
Q Consensus 63 ~~~~~l~~~l~~-~r~LlVlDdv~ 85 (700)
.....+.+.+.. +.-++|+|.+.
T Consensus 107 ~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 107 KLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred HHHHHHHHHHHhcCCCEEEEecHH
Confidence 566666666654 55689999875
No 330
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.11 E-value=1.6 Score=45.83 Aligned_cols=50 Identities=16% Similarity=0.156 Sum_probs=28.3
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCC
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIRKKIGLC 52 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~ 52 (700)
++|+||||+|.+++..+. .... ..+..++..... .....+...++..+.+
T Consensus 231 ptGvGKTTtaaKLA~~~~-~~~G-~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp 281 (432)
T PRK12724 231 PTGSGKTTSIAKLAAKYF-LHMG-KSVSLYTTDNYRIAAIEQLKRYADTMGMP 281 (432)
T ss_pred CCCCCHHHHHHHHHHHHH-HhcC-CeEEEecccchhhhHHHHHHHHHHhcCCC
Confidence 479999999999997651 1112 244445433322 2334445555555553
No 331
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=90.11 E-value=1.4 Score=43.30 Aligned_cols=67 Identities=9% Similarity=0.184 Sum_probs=39.4
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-----ccCc
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTL-----SKKK 76 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~~r 76 (700)
+|+||...|+.++++.-...-+=+. ..........+ ....+++...+++.++ ..+|
T Consensus 119 tGTGKN~Va~iiA~n~~~~Gl~S~~---------------V~~fvat~hFP----~~~~ie~Yk~eL~~~v~~~v~~C~r 179 (344)
T KOG2170|consen 119 TGTGKNYVAEIIAENLYRGGLRSPF---------------VHHFVATLHFP----HASKIEDYKEELKNRVRGTVQACQR 179 (344)
T ss_pred CCCchhHHHHHHHHHHHhccccchh---------------HHHhhhhccCC----ChHHHHHHHHHHHHHHHHHHHhcCC
Confidence 6999999999999997222211111 12222222222 3444444444444444 2489
Q ss_pred EEEEEcCCCch
Q 005367 77 FALLLDDLWER 87 (700)
Q Consensus 77 ~LlVlDdv~~~ 87 (700)
-|+|||+++..
T Consensus 180 slFIFDE~DKm 190 (344)
T KOG2170|consen 180 SLFIFDEVDKL 190 (344)
T ss_pred ceEEechhhhc
Confidence 99999999876
No 332
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.06 E-value=1.9 Score=44.76 Aligned_cols=79 Identities=18% Similarity=0.133 Sum_probs=42.8
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhc-cCcEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLS-KKKFA 78 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~r~L 78 (700)
++|+||||++.+++... ...-..+..+++.... ...+.+...++..+.+.. ...+..++.+.+...-. .+-=+
T Consensus 249 ptGvGKTTTiaKLA~~L---~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~--v~~d~~~L~~aL~~lk~~~~~Dv 323 (436)
T PRK11889 249 PTGVGKTTTLAKMAWQF---HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVI--AVRDEAAMTRALTYFKEEARVDY 323 (436)
T ss_pred CCCCcHHHHHHHHHHHH---HHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEE--ecCCHHHHHHHHHHHHhccCCCE
Confidence 47999999999999887 2222345556554332 233344455555554421 12344444444433321 12347
Q ss_pred EEEcCC
Q 005367 79 LLLDDL 84 (700)
Q Consensus 79 lVlDdv 84 (700)
+++|-.
T Consensus 324 VLIDTa 329 (436)
T PRK11889 324 ILIDTA 329 (436)
T ss_pred EEEeCc
Confidence 788865
No 333
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=90.02 E-value=0.6 Score=42.83 Aligned_cols=31 Identities=23% Similarity=0.128 Sum_probs=21.6
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCc
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD 35 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~ 35 (700)
||+||||+|..++...+ ..-..+.-|+....
T Consensus 9 gG~GKTt~a~~LA~~la---~~g~~vllvD~D~q 39 (169)
T cd02037 9 GGVGKSTVAVNLALALA---KLGYKVGLLDADIY 39 (169)
T ss_pred CcCChhHHHHHHHHHHH---HcCCcEEEEeCCCC
Confidence 89999999999999873 22234555654433
No 334
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=90.01 E-value=0.61 Score=47.17 Aligned_cols=79 Identities=14% Similarity=0.050 Sum_probs=45.8
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCC---CCCccHHHHHHHHHHHhcc-Cc
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDS---WKNKSLEEKAQDIFKTLSK-KK 76 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~-~r 76 (700)
..|+|||+||..+.... .+.-..++||+..+..+..- ++++++..+. ..+...++....+.+.++. .-
T Consensus 61 ~~ssGKttLaL~~ia~~---q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e~lirsg~~ 132 (322)
T PF00154_consen 61 PESSGKTTLALHAIAEA---QKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAEQLIRSGAV 132 (322)
T ss_dssp STTSSHHHHHHHHHHHH---HHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHHHHHHTTSE
T ss_pred CCCCchhhhHHHHHHhh---hcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHHHHhhcccc
Confidence 36899999999998876 33457889999888776533 3334332111 0234456666666666654 34
Q ss_pred EEEEEcCCCch
Q 005367 77 FALLLDDLWER 87 (700)
Q Consensus 77 ~LlVlDdv~~~ 87 (700)
-++|+|-|...
T Consensus 133 ~lVVvDSv~al 143 (322)
T PF00154_consen 133 DLVVVDSVAAL 143 (322)
T ss_dssp SEEEEE-CTT-
T ss_pred cEEEEecCccc
Confidence 58999988544
No 335
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=89.98 E-value=0.16 Score=29.87 Aligned_cols=17 Identities=35% Similarity=0.925 Sum_probs=14.1
Q ss_pred CCCccEEEEcCCCCCCC
Q 005367 644 LPRLKELEVRGCDSLEK 660 (700)
Q Consensus 644 ~~~L~~L~i~~C~~L~~ 660 (700)
+|+|++|++++|+++++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 47888889999988876
No 336
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=89.96 E-value=6.6 Score=40.01 Aligned_cols=49 Identities=20% Similarity=0.165 Sum_probs=36.3
Q ss_pred eEeccCCChHhHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCCchHH
Q 005367 121 TFKVECLSDEAAWELFREKVGEETIESHHSIPELAQTVAKECGGLPLAL 169 (700)
Q Consensus 121 ~~~l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 169 (700)
.++|++++.+|+..++.-+....-.......+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999888755443333445667777777779999543
No 337
>PRK14974 cell division protein FtsY; Provisional
Probab=89.90 E-value=1.6 Score=44.71 Aligned_cols=83 Identities=16% Similarity=0.105 Sum_probs=44.1
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCc-cCHHHHHHHHHHHcCCCCCC-CCCccHHHHH-HHHHHHhccCcE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD-LQLEKIQETIRKKIGLCNDS-WKNKSLEEKA-QDIFKTLSKKKF 77 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~-~~l~~~l~~~r~ 77 (700)
++|+||||++.+++.... ...+ .++.+..... ......+...++.++.+.-. ....+....+ +.+...-.+..=
T Consensus 148 ~~GvGKTTtiakLA~~l~--~~g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~~~D 224 (336)
T PRK14974 148 VNGTGKTTTIAKLAYYLK--KNGF-SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGID 224 (336)
T ss_pred CCCCCHHHHHHHHHHHHH--HcCC-eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999988762 1223 3444543321 23444566677777654311 1222332322 233332223333
Q ss_pred EEEEcCCCc
Q 005367 78 ALLLDDLWE 86 (700)
Q Consensus 78 LlVlDdv~~ 86 (700)
++++|-.-.
T Consensus 225 vVLIDTaGr 233 (336)
T PRK14974 225 VVLIDTAGR 233 (336)
T ss_pred EEEEECCCc
Confidence 999997743
No 338
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=89.83 E-value=1.5 Score=40.88 Aligned_cols=17 Identities=35% Similarity=0.413 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.++..+
T Consensus 11 ~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 11 GPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999999876
No 339
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=89.71 E-value=1.3 Score=44.24 Aligned_cols=82 Identities=20% Similarity=0.151 Sum_probs=44.7
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCCCC-CCCCccHHHH-HHHHHHHhccCcE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIRKKIGLCND-SWKNKSLEEK-AQDIFKTLSKKKF 77 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~-~~~~~~~~~~-~~~l~~~l~~~r~ 77 (700)
++|+||||.+.+++... ...-..+..+++.... .....+...++..+.+.- .....+.... ...+.....+..=
T Consensus 80 ~~G~GKTTt~akLA~~l---~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~~~~D 156 (272)
T TIGR00064 80 VNGVGKTTTIAKLANKL---KKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNID 156 (272)
T ss_pred CCCCcHHHHHHHHHHHH---HhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHHCCCC
Confidence 58999999999999887 3333466677654322 223444455566553311 0011222222 2334333344456
Q ss_pred EEEEcCCC
Q 005367 78 ALLLDDLW 85 (700)
Q Consensus 78 LlVlDdv~ 85 (700)
++|+|-.-
T Consensus 157 ~ViIDT~G 164 (272)
T TIGR00064 157 VVLIDTAG 164 (272)
T ss_pred EEEEeCCC
Confidence 88888663
No 340
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=89.59 E-value=0.51 Score=43.58 Aligned_cols=17 Identities=35% Similarity=0.577 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
.+|.||||+|++++.+.
T Consensus 8 ~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 8 PPGAGKSTLAKKLAKKL 24 (178)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 48999999999999996
No 341
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=89.43 E-value=4.8 Score=40.88 Aligned_cols=17 Identities=35% Similarity=0.597 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
.+|+|||++|++++...
T Consensus 72 ~pGtGKTtla~~lA~~l 88 (327)
T TIGR01650 72 YHGTGKSTHIEQIAARL 88 (327)
T ss_pred CCCChHHHHHHHHHHHH
Confidence 47999999999999987
No 342
>PRK11823 DNA repair protein RadA; Provisional
Probab=89.42 E-value=0.54 Score=50.55 Aligned_cols=31 Identities=29% Similarity=0.463 Sum_probs=23.9
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCc
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD 35 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~ 35 (700)
+|+|||+|+.+++.... +.-..++|++..+.
T Consensus 89 pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ees 119 (446)
T PRK11823 89 PGIGKSTLLLQVAARLA---AAGGKVLYVSGEES 119 (446)
T ss_pred CCCCHHHHHHHHHHHHH---hcCCeEEEEEcccc
Confidence 79999999999999872 33457888876543
No 343
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=89.36 E-value=3.2 Score=44.18 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+|||-|||+++-..
T Consensus 345 PPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 345 PPGTGKTLLARAVAGEA 361 (752)
T ss_pred CCCCchhHHHHHhhccc
Confidence 58999999999999886
No 344
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=89.31 E-value=2.1 Score=45.21 Aligned_cols=51 Identities=20% Similarity=0.178 Sum_probs=30.3
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC-ccCHHHHHHHHHHHcCCC
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK-DLQLEKIQETIRKKIGLC 52 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~~~~~ 52 (700)
+.|+||||++++++.+. ......+.+..+.... .....+.+....+.++.+
T Consensus 199 pnG~GKTTtlakLA~~~-~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp 250 (420)
T PRK14721 199 PTGVGKTTTTAKLAARA-VIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVS 250 (420)
T ss_pred CCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCc
Confidence 46999999999998764 1122234455554333 234455566666666654
No 345
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=89.29 E-value=0.85 Score=51.81 Aligned_cols=77 Identities=16% Similarity=0.091 Sum_probs=51.4
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCC---CCCccHHHHHHHHHHHhcc-Cc
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDS---WKNKSLEEKAQDIFKTLSK-KK 76 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~-~r 76 (700)
.+|+|||+||.+++... ...-..++||+..+.++. ..+++++...+. ......+.....+...+++ +-
T Consensus 68 ~~GsGKTtLal~~~~~a---~~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~~ 139 (790)
T PRK09519 68 PESSGKTTVALHAVANA---QAAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGAL 139 (790)
T ss_pred CCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCCC
Confidence 37999999999987765 234467899998777774 366777654321 1233445555556665544 55
Q ss_pred EEEEEcCCC
Q 005367 77 FALLLDDLW 85 (700)
Q Consensus 77 ~LlVlDdv~ 85 (700)
-|+|+|.+.
T Consensus 140 ~LVVIDSI~ 148 (790)
T PRK09519 140 DIVVIDSVA 148 (790)
T ss_pred eEEEEcchh
Confidence 799999985
No 346
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=89.26 E-value=2.2 Score=47.10 Aligned_cols=122 Identities=17% Similarity=0.237 Sum_probs=64.6
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhc---cCcE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLS---KKKF 77 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~---~~r~ 77 (700)
++|||||++|+.|+.-. .+.| |-++++.-.+..++ -. +..--+.++-.++.++|+ ...=
T Consensus 446 PPGVGKTSI~kSIA~AL---nRkF---fRfSvGG~tDvAeI----kG--------HRRTYVGAMPGkiIq~LK~v~t~NP 507 (906)
T KOG2004|consen 446 PPGVGKTSIAKSIARAL---NRKF---FRFSVGGMTDVAEI----KG--------HRRTYVGAMPGKIIQCLKKVKTENP 507 (906)
T ss_pred CCCCCcccHHHHHHHHh---CCce---EEEeccccccHHhh----cc--------cceeeeccCChHHHHHHHhhCCCCc
Confidence 68999999999999987 3332 22333443333332 00 011112223333444443 3556
Q ss_pred EEEEcCCCch---------hhhhhhcCcCCC-------------CcEEEE-ec-Cchhhh--hcccCcceEeccCCChHh
Q 005367 78 ALLLDDLWER---------VDLKKIGVPLPK-------------NSAVVF-TT-RFVDVC--GRMEARRTFKVECLSDEA 131 (700)
Q Consensus 78 LlVlDdv~~~---------~~~~~l~~~~~~-------------gs~iii-TT-r~~~~~--~~~~~~~~~~l~~L~~~~ 131 (700)
|+.||.|+.. .++-+++.|=+. =|+|++ -| ...+.- ...+.-..|++.+...+|
T Consensus 508 liLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eE 587 (906)
T KOG2004|consen 508 LILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEE 587 (906)
T ss_pred eEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhhhhheeeccCccHHH
Confidence 8999999644 122222222111 366664 33 221110 001223689999999999
Q ss_pred HHHHHHHHh
Q 005367 132 AWELFREKV 140 (700)
Q Consensus 132 a~~l~~~~~ 140 (700)
-++.-.++.
T Consensus 588 Kv~IA~~yL 596 (906)
T KOG2004|consen 588 KVKIAERYL 596 (906)
T ss_pred HHHHHHHhh
Confidence 888877776
No 347
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=89.01 E-value=0.91 Score=50.66 Aligned_cols=106 Identities=17% Similarity=0.235 Sum_probs=55.2
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCC-CCCCCccHHHHHHHHHHHhcc------
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCN-DSWKNKSLEEKAQDIFKTLSK------ 74 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~------ 74 (700)
+|+||||+++++........+.-...+.+.+....-...+.+.+...+..-. .............-+.+.|+-
T Consensus 176 pGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrlLg~~~~~~~ 255 (615)
T PRK10875 176 PGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRLLGAQPGSQR 255 (615)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHHhCcCCCccc
Confidence 7999999999988765221111124566665555444555544443331100 000000000112233333321
Q ss_pred ------Cc---EEEEEcCCCch--hhhhhhcCcCCCCcEEEEec
Q 005367 75 ------KK---FALLLDDLWER--VDLKKIGVPLPKNSAVVFTT 107 (700)
Q Consensus 75 ------~r---~LlVlDdv~~~--~~~~~l~~~~~~gs~iiiTT 107 (700)
.. -++|+|.++=. .....+..++++++++|+--
T Consensus 256 ~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~~~~rlIlvG 299 (615)
T PRK10875 256 LRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALPPHARVIFLG 299 (615)
T ss_pred hhhccccCCCCCeEEEChHhcccHHHHHHHHHhcccCCEEEEec
Confidence 11 28999998644 44666777788888887754
No 348
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=88.87 E-value=0.44 Score=49.38 Aligned_cols=97 Identities=11% Similarity=0.077 Sum_probs=53.3
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHH-HHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE-KIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~Ll 79 (700)
+.|.||||+.+.+.... .......++.- .++.... .-...+..+.. .........+.++..++...=.+
T Consensus 130 ~tGSGKTT~l~al~~~i---~~~~~~~i~ti-Edp~E~~~~~~~~~i~q~e------vg~~~~~~~~~l~~~lr~~pd~i 199 (343)
T TIGR01420 130 PTGSGKSTTLASMIDYI---NKNAAGHIITI-EDPIEYVHRNKRSLINQRE------VGLDTLSFANALRAALREDPDVI 199 (343)
T ss_pred CCCCCHHHHHHHHHHhh---CcCCCCEEEEE-cCChhhhccCccceEEccc------cCCCCcCHHHHHHHhhccCCCEE
Confidence 46999999999988876 33333444432 2221110 00000011110 11112345566777888888899
Q ss_pred EEcCCCchhhhhhhcCcCCCCcEEEEec
Q 005367 80 LLDDLWERVDLKKIGVPLPKNSAVVFTT 107 (700)
Q Consensus 80 VlDdv~~~~~~~~l~~~~~~gs~iiiTT 107 (700)
++|.+.+.+.+.........|-.|+.|.
T Consensus 200 ~vgEird~~~~~~~l~aa~tGh~v~~T~ 227 (343)
T TIGR01420 200 LIGEMRDLETVELALTAAETGHLVFGTL 227 (343)
T ss_pred EEeCCCCHHHHHHHHHHHHcCCcEEEEE
Confidence 9999998877665434434465544444
No 349
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=88.80 E-value=2.7 Score=46.42 Aligned_cols=43 Identities=14% Similarity=0.049 Sum_probs=26.3
Q ss_pred CcEEEEe-cCchhhh-hccc-CcceEeccCCChHhHHHHHHHHhcc
Q 005367 100 NSAVVFT-TRFVDVC-GRME-ARRTFKVECLSDEAAWELFREKVGE 142 (700)
Q Consensus 100 gs~iiiT-Tr~~~~~-~~~~-~~~~~~l~~L~~~~a~~l~~~~~~~ 142 (700)
..++|.+ |++.+-. .... ....+.+.+++.+|-.+++.+.+..
T Consensus 233 d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k 278 (531)
T TIGR02902 233 DFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEK 278 (531)
T ss_pred ceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHHH
Confidence 4566654 4443321 1111 1246789999999988888887744
No 350
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=88.59 E-value=0.79 Score=48.90 Aligned_cols=84 Identities=15% Similarity=0.192 Sum_probs=51.1
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCC-----CCCCCCccHH-----HHHHHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIRKKIGLC-----NDSWKNKSLE-----EKAQDIFK 70 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~-----~~~~~~~~~~-----~~~~~l~~ 70 (700)
+|+|||+|+.+++.... +++-+.++++-+++.. ...++.+.+...-... ....+..... ...-.+.+
T Consensus 152 ~G~GKt~Ll~~~~~~~~--~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~~a~tiAE 229 (461)
T PRK12597 152 AGVGKTVLMMELIFNIS--KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVLTGLTIAE 229 (461)
T ss_pred CCCChhHHHHHHHHHHH--hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 69999999999998872 2256788888777665 4677777776542211 0111111111 11122344
Q ss_pred Hh---ccCcEEEEEcCCCch
Q 005367 71 TL---SKKKFALLLDDLWER 87 (700)
Q Consensus 71 ~l---~~~r~LlVlDdv~~~ 87 (700)
.+ +++.+|+++|++...
T Consensus 230 yfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 230 YLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHhcCCceEEEeccchHH
Confidence 44 378999999999655
No 351
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=88.55 E-value=0.21 Score=42.62 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDY 26 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~ 26 (700)
.+|+|||++|++++... ...|..
T Consensus 7 ~PG~GKT~la~~lA~~~---~~~f~R 29 (131)
T PF07726_consen 7 VPGVGKTTLAKALARSL---GLSFKR 29 (131)
T ss_dssp ---HHHHHHHHHHHHHT---T--EEE
T ss_pred CCccHHHHHHHHHHHHc---CCceeE
Confidence 37999999999999998 566654
No 352
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=88.52 E-value=1.2 Score=42.99 Aligned_cols=31 Identities=19% Similarity=0.203 Sum_probs=24.6
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCc
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD 35 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~ 35 (700)
+|+|||++|.+++... -+.-..++|++...+
T Consensus 25 ~G~GKt~~~~~~~~~~---~~~g~~~~y~s~e~~ 55 (224)
T TIGR03880 25 YGTGKTTFSLQFLYQG---LKNGEKAMYISLEER 55 (224)
T ss_pred CCCCHHHHHHHHHHHH---HhCCCeEEEEECCCC
Confidence 7999999999998876 334578888887664
No 353
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=88.34 E-value=1.3 Score=42.28 Aligned_cols=42 Identities=31% Similarity=0.552 Sum_probs=31.7
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc-CHHHHHHHHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIRKK 48 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~ 48 (700)
+|+|||+|+.++++.. .-+.++++-+++.. ...++.+++...
T Consensus 24 ~g~GKt~Ll~~i~~~~-----~~d~~V~~~iGer~~Ev~~~~~~~~~~ 66 (215)
T PF00006_consen 24 AGVGKTVLLQEIANNQ-----DADVVVYALIGERGREVTEFIEELKGE 66 (215)
T ss_dssp TTSSHHHHHHHHHHHC-----TTTEEEEEEESECHHHHHHHHHHHHHT
T ss_pred cccccchhhHHHHhcc-----cccceeeeeccccchhHHHHHHHHhhc
Confidence 7999999999999997 34555778777654 577777777554
No 354
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=88.24 E-value=1.6 Score=51.12 Aligned_cols=186 Identities=17% Similarity=0.116 Sum_probs=92.6
Q ss_pred CCCcHHHHHHHHHhhcccCCC-CCCEEEEEEeCC----ccCHH--HHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhcc
Q 005367 2 GGVGKTTLLTQINNKFVDNPT-DFDYVIWVVVSK----DLQLE--KIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSK 74 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~-~f~~~~wv~~~~----~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 74 (700)
+|.||||....++-....... .=+..+++.... ..... .+..-+...+... .............+..
T Consensus 231 pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~------~~~~~~~~~~~e~l~~ 304 (824)
T COG5635 231 PGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQ------GIAKQLIEAHQELLKT 304 (824)
T ss_pred CCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhcc------CCcchhhHHHHHHHhc
Confidence 799999999998877632221 123334443221 11111 2223333333221 1122222333677889
Q ss_pred CcEEEEEcCCCchhh---------hhhhcCcCCCCcEEEEecCchhhhhcccCcceEeccCCChHhHHHHHHHH-----h
Q 005367 75 KKFALLLDDLWERVD---------LKKIGVPLPKNSAVVFTTRFVDVCGRMEARRTFKVECLSDEAAWELFREK-----V 140 (700)
Q Consensus 75 ~r~LlVlDdv~~~~~---------~~~l~~~~~~gs~iiiTTr~~~~~~~~~~~~~~~l~~L~~~~a~~l~~~~-----~ 140 (700)
+++|+.+|.++.... +..+..-++ ..++|+|+|....-.....-..+++..+.++.-....... .
T Consensus 305 g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~~-~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~~~~~~~~ 383 (824)
T COG5635 305 GKLLLLLDGLDELEPKNQRALIREINKFLQEYP-DAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILYQWLDAFI 383 (824)
T ss_pred cchhhHhhccchhhhhhHHHHHHHHHHHhhhcc-CCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHHHHHHHHH
Confidence 999999999987621 223322233 8999999984322221222345667777766544333311 1
Q ss_pred ---cccccCC----CCChHHHHHHHHHHhCCCchHHHHHHHHhccC-----CChHHHHHHHHHHHh
Q 005367 141 ---GEETIES----HHSIPELAQTVAKECGGLPLALITIGRAMAYK-----KTPEEWRYAIEVLRR 194 (700)
Q Consensus 141 ---~~~~~~~----~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~-----~~~~~~~~~l~~~~~ 194 (700)
++..... ...+......-++.....|+++.+.+..-... ...+-|....+.+-.
T Consensus 384 ~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~ 449 (824)
T COG5635 384 EDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLG 449 (824)
T ss_pred HhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHh
Confidence 1111000 00011112233444478899999988444311 245556665555544
No 355
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=88.17 E-value=2.5 Score=39.11 Aligned_cols=107 Identities=16% Similarity=0.169 Sum_probs=53.1
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCC-------------CCccHHHHHHH
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSW-------------KNKSLEEKAQD 67 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~-------------~~~~~~~~~~~ 67 (700)
..|.|||||++.++..... ....++++-. +.......+.+.++...+.. .-..-+...-.
T Consensus 36 ~nGsGKStLl~~l~G~~~~----~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv~ 108 (178)
T cd03247 36 RSGSGKSTLLQLLTGDLKP----QQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRLA 108 (178)
T ss_pred CCCCCHHHHHHHHhccCCC----CCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHHHHH
Confidence 3699999999999987622 2333444321 11111112222222111110 01111222223
Q ss_pred HHHHhccCcEEEEEcCCCchh------hhhhhcCcCCCCcEEEEecCchhhhh
Q 005367 68 IFKTLSKKKFALLLDDLWERV------DLKKIGVPLPKNSAVVFTTRFVDVCG 114 (700)
Q Consensus 68 l~~~l~~~r~LlVlDdv~~~~------~~~~l~~~~~~gs~iiiTTr~~~~~~ 114 (700)
+.+.+-.+.=++++|+-.+.- .+..+...+..+..||++|.+.+...
T Consensus 109 laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 109 LARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 455566777889999875441 12222222233778888888777654
No 356
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=88.13 E-value=1.4 Score=41.49 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=26.9
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHH
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 39 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 39 (700)
|+|+||||=+..+++.. -...+-+++.=.++++...+.
T Consensus 56 pPG~GKTTsi~~LAr~L-LG~~~ke~vLELNASdeRGID 93 (333)
T KOG0991|consen 56 PPGTGKTTSILCLAREL-LGDSYKEAVLELNASDERGID 93 (333)
T ss_pred CCCCchhhHHHHHHHHH-hChhhhhHhhhccCccccccH
Confidence 79999999888888886 233355677766666665443
No 357
>PRK13695 putative NTPase; Provisional
Probab=88.10 E-value=0.63 Score=42.98 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCchhh-----hhhhcCcCCCCcEEEEecCchhh
Q 005367 75 KKFALLLDDLWERVD-----LKKIGVPLPKNSAVVFTTRFVDV 112 (700)
Q Consensus 75 ~r~LlVlDdv~~~~~-----~~~l~~~~~~gs~iiiTTr~~~~ 112 (700)
+.-++|+|.++..+. .+.+...+..|..+|+|+.+..+
T Consensus 96 ~~~~lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~~~ 138 (174)
T PRK13695 96 EADVIIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRRSV 138 (174)
T ss_pred CCCEEEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECchhh
Confidence 445689998765422 23333334447888888887554
No 358
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=88.06 E-value=2 Score=48.71 Aligned_cols=80 Identities=18% Similarity=0.158 Sum_probs=45.8
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~Ll 79 (700)
+.|+||||.+.+++..+. ..+....+..+...... ...+.++...+.++.+.. ...+.+++.+.+. .+.++ =++
T Consensus 193 pnGvGKTTTiaKLA~~~~-~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~--~~~~~~~l~~al~-~~~~~-D~V 267 (767)
T PRK14723 193 PTGVGKTTTTAKLAARCV-AREGADQLALLTTDSFRIGALEQLRIYGRILGVPVH--AVKDAADLRFALA-ALGDK-HLV 267 (767)
T ss_pred CCCCcHHHHHHHHHhhHH-HHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc--ccCCHHHHHHHHH-HhcCC-CEE
Confidence 479999999999998762 12222456666544322 355666677777765442 2234455444443 33433 367
Q ss_pred EEcCCC
Q 005367 80 LLDDLW 85 (700)
Q Consensus 80 VlDdv~ 85 (700)
++|=.-
T Consensus 268 LIDTAG 273 (767)
T PRK14723 268 LIDTVG 273 (767)
T ss_pred EEeCCC
Confidence 777553
No 359
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=88.03 E-value=0.9 Score=48.91 Aligned_cols=31 Identities=29% Similarity=0.451 Sum_probs=23.1
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCc
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD 35 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~ 35 (700)
+|+|||||+.+++.... ..-..++||+..+.
T Consensus 103 pGsGKTTL~lq~a~~~a---~~g~kvlYvs~EEs 133 (454)
T TIGR00416 103 PGIGKSTLLLQVACQLA---KNQMKVLYVSGEES 133 (454)
T ss_pred CCCCHHHHHHHHHHHHH---hcCCcEEEEECcCC
Confidence 79999999999988762 22246888876543
No 360
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=88.01 E-value=0.56 Score=44.26 Aligned_cols=94 Identities=18% Similarity=0.181 Sum_probs=45.5
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh------cc
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTL------SK 74 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l------~~ 74 (700)
.+|+|||++++.+...+. ..- ..+.+.+........ +.+..+... ..+..........- ..
T Consensus 26 ~aGtGKT~~l~~~~~~~~---~~g-~~v~~~apT~~Aa~~----L~~~~~~~a-----~Ti~~~l~~~~~~~~~~~~~~~ 92 (196)
T PF13604_consen 26 PAGTGKTTLLKALAEALE---AAG-KRVIGLAPTNKAAKE----LREKTGIEA-----QTIHSFLYRIPNGDDEGRPELP 92 (196)
T ss_dssp STTSTHHHHHHHHHHHHH---HTT---EEEEESSHHHHHH----HHHHHTS-E-----EEHHHHTTEECCEECCSSCC-T
T ss_pred CCCCCHHHHHHHHHHHHH---hCC-CeEEEECCcHHHHHH----HHHhhCcch-----hhHHHHHhcCCcccccccccCC
Confidence 489999999999888772 222 333333333322332 333332211 11110000000000 13
Q ss_pred CcEEEEEcCCCch--hhhhhhcCcCCC-CcEEEEec
Q 005367 75 KKFALLLDDLWER--VDLKKIGVPLPK-NSAVVFTT 107 (700)
Q Consensus 75 ~r~LlVlDdv~~~--~~~~~l~~~~~~-gs~iiiTT 107 (700)
++-++|+|+++-. .++..+...... |.++|+.-
T Consensus 93 ~~~vliVDEasmv~~~~~~~ll~~~~~~~~klilvG 128 (196)
T PF13604_consen 93 KKDVLIVDEASMVDSRQLARLLRLAKKSGAKLILVG 128 (196)
T ss_dssp STSEEEESSGGG-BHHHHHHHHHHS-T-T-EEEEEE
T ss_pred cccEEEEecccccCHHHHHHHHHHHHhcCCEEEEEC
Confidence 3459999999765 457777666666 78877654
No 361
>PRK08233 hypothetical protein; Provisional
Probab=87.99 E-value=1.2 Score=41.24 Aligned_cols=17 Identities=41% Similarity=0.665 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
.+|+||||+|++++...
T Consensus 11 ~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 11 VSGGGKTTLTERLTHKL 27 (182)
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 47999999999999887
No 362
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=87.95 E-value=0.33 Score=41.96 Aligned_cols=17 Identities=29% Similarity=0.644 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+++..+.
T Consensus 6 ~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 6 IPGSGKTTIAKELAERL 22 (129)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999999984
No 363
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.92 E-value=0.029 Score=52.33 Aligned_cols=92 Identities=22% Similarity=0.165 Sum_probs=75.7
Q ss_pred ccccccccCCCcceEEEccCCcccccCCcccccccccceeccccCcccccchhhhcCCCCCEEecccccCccccchhhhc
Q 005367 364 TIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQLLDISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLS 443 (700)
Q Consensus 364 ~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~ 443 (700)
.++-.-+..++..++||++.| ....+-..++.+..|..|+++.|.+.-+|+.++.+..+++++...| .....|.. .+
T Consensus 32 ~~~v~ei~~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s-~~ 108 (326)
T KOG0473|consen 32 EIPVREIASFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKS-QK 108 (326)
T ss_pred ccchhhhhccceeeeehhhhh-HHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCcc-cc
Confidence 333333567788899999999 5555666788889999999999999999999999999999998866 56788887 88
Q ss_pred CCCccceeeccccCc
Q 005367 444 NFSRLRVLRMFATGL 458 (700)
Q Consensus 444 ~l~~L~~L~l~~~~~ 458 (700)
+.+.++.++...|.+
T Consensus 109 k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEF 123 (326)
T ss_pred ccCCcchhhhccCcc
Confidence 999999999887764
No 364
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=87.84 E-value=2.3 Score=38.88 Aligned_cols=106 Identities=15% Similarity=0.141 Sum_probs=51.2
Q ss_pred CCCcHHHHHHHHHhhcccCCCC--C---CEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCc
Q 005367 2 GGVGKTTLLTQINNKFVDNPTD--F---DYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKK 76 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~--f---~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r 76 (700)
.|.|||||++.++.......+. + ..+.++.-......... .+.+...... .-..-+...-.+.+.+..+.
T Consensus 36 nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv----~~nl~~~~~~-~LS~G~~~rv~laral~~~p 110 (166)
T cd03223 36 SGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTL----REQLIYPWDD-VLSGGEQQRLAFARLLLHKP 110 (166)
T ss_pred CCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccH----HHHhhccCCC-CCCHHHHHHHHHHHHHHcCC
Confidence 6999999999999875222221 1 12333321111111122 2222110011 12222333334556666677
Q ss_pred EEEEEcCCCch------hhhhhhcCcCCCCcEEEEecCchhhhh
Q 005367 77 FALLLDDLWER------VDLKKIGVPLPKNSAVVFTTRFVDVCG 114 (700)
Q Consensus 77 ~LlVlDdv~~~------~~~~~l~~~~~~gs~iiiTTr~~~~~~ 114 (700)
=++++|+-... ..+..+...+ +..||++|.+.+...
T Consensus 111 ~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 111 KFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred CEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 78888876433 2222222222 567888887766543
No 365
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=87.82 E-value=1.7 Score=40.32 Aligned_cols=109 Identities=18% Similarity=0.214 Sum_probs=55.5
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC--ccCHHH------HHHHHHHHcCCCCC---CCC-CccHHHHHHHH
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK--DLQLEK------IQETIRKKIGLCND---SWK-NKSLEEKAQDI 68 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~--~~~~~~------~~~~i~~~~~~~~~---~~~-~~~~~~~~~~l 68 (700)
..|.|||||++.++... ......++++-.+ ..+... ...++++.++.... ... -..-+...-.+
T Consensus 33 ~nGsGKStLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~l 108 (180)
T cd03214 33 PNGAGKSTLLKTLAGLL----KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQRVLL 108 (180)
T ss_pred CCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHH
Confidence 36999999999998875 2233444443111 111111 11124555544321 001 11122222335
Q ss_pred HHHhccCcEEEEEcCCCch------hhhhhhcCcCCC--CcEEEEecCchhhh
Q 005367 69 FKTLSKKKFALLLDDLWER------VDLKKIGVPLPK--NSAVVFTTRFVDVC 113 (700)
Q Consensus 69 ~~~l~~~r~LlVlDdv~~~------~~~~~l~~~~~~--gs~iiiTTr~~~~~ 113 (700)
.+.+....-++++|+-... ..+..+...+.. |..||++|.+.+..
T Consensus 109 aral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 109 ARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 5666677789999977533 222222222322 67888888776654
No 366
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=87.72 E-value=2.7 Score=41.07 Aligned_cols=153 Identities=16% Similarity=0.201 Sum_probs=73.3
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTL-SKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~Ll 79 (700)
.+|+|||-||+++++.. ..-| .+..-.++++...... ..++..+++.- .+..-++
T Consensus 227 ~PGTGKTLLAKAVANqT---SATF-------------lRvvGseLiQkylGdG--------pklvRqlF~vA~e~apSIv 282 (440)
T KOG0726|consen 227 EPGTGKTLLAKAVANQT---SATF-------------LRVVGSELIQKYLGDG--------PKLVRELFRVAEEHAPSIV 282 (440)
T ss_pred CCCCchhHHHHHHhccc---chhh-------------hhhhhHHHHHHHhccc--------hHHHHHHHHHHHhcCCceE
Confidence 37999999999999986 2222 1222334444432111 12333333322 3567888
Q ss_pred EEcCCCch------------hh-----hhhh--cCcCCC--CcEEEEecCchhhhhc--cc---CcceEeccCCChHhHH
Q 005367 80 LLDDLWER------------VD-----LKKI--GVPLPK--NSAVVFTTRFVDVCGR--ME---ARRTFKVECLSDEAAW 133 (700)
Q Consensus 80 VlDdv~~~------------~~-----~~~l--~~~~~~--gs~iiiTTr~~~~~~~--~~---~~~~~~l~~L~~~~a~ 133 (700)
++|.++-. .+ ++-+ ...|.. .-+||..|...+.++. ++ .++.++.+.-+...-.
T Consensus 283 FiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~Tkk 362 (440)
T KOG0726|consen 283 FIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKK 362 (440)
T ss_pred EeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhc
Confidence 88988532 00 1111 233433 4667776654443322 12 2445555555554445
Q ss_pred HHHHHHhcccccCCCCChHHHHHHHHHHhCCCchHHHHHHHHhc
Q 005367 134 ELFREKVGEETIESHHSIPELAQTVAKECGGLPLALITIGRAMA 177 (700)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~ 177 (700)
++|.-+..+-+....-.++++...=-...|---.||-.=|+.++
T Consensus 363 kIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllA 406 (440)
T KOG0726|consen 363 KIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLA 406 (440)
T ss_pred eeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHH
Confidence 56655544333333333444433322233333455555555553
No 367
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=87.64 E-value=0.48 Score=47.03 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
.||.||||+|+++....
T Consensus 9 ~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 9 LPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -TTSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 48999999999999987
No 368
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=87.63 E-value=1.6 Score=46.45 Aligned_cols=79 Identities=20% Similarity=0.176 Sum_probs=44.0
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccC-HHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQ-LEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~Ll 79 (700)
++|+||||++.+++.... .......+..|+...... ....+....+.++.+.. ...+..+....+.+ +. ..=++
T Consensus 229 ptGvGKTTt~~kLA~~~~-~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--~~~~~~~l~~~l~~-~~-~~DlV 303 (424)
T PRK05703 229 PTGVGKTTTLAKLAARYA-LLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--VVYDPKELAKALEQ-LR-DCDVI 303 (424)
T ss_pred CCCCCHHHHHHHHHHHHH-HhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE--ccCCHHhHHHHHHH-hC-CCCEE
Confidence 589999999999988771 012335667777544322 22334444555554432 22233444444443 22 35688
Q ss_pred EEcCC
Q 005367 80 LLDDL 84 (700)
Q Consensus 80 VlDdv 84 (700)
|+|..
T Consensus 304 lIDt~ 308 (424)
T PRK05703 304 LIDTA 308 (424)
T ss_pred EEeCC
Confidence 88965
No 369
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=87.62 E-value=0.8 Score=44.36 Aligned_cols=81 Identities=23% Similarity=0.236 Sum_probs=47.8
Q ss_pred CCCCcHHHHHHHHHhhcccCCCC-CCEEEEEEeCCccCHHHHHHHHHHHcCCC-------------CCCCC-----CccH
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTD-FDYVIWVVVSKDLQLEKIQETIRKKIGLC-------------NDSWK-----NKSL 61 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~~~~~-------------~~~~~-----~~~~ 61 (700)
.+|+|||++|.+++... -.. -+.++||...++. ..+.+.+. .++.. +.... ..+.
T Consensus 27 ~~GsGKT~l~~q~l~~~---~~~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~~~~~~~~ 100 (226)
T PF06745_consen 27 PPGSGKTTLALQFLYNG---LKNFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPERIGWSPNDL 100 (226)
T ss_dssp STTSSHHHHHHHHHHHH---HHHHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGST-TSCCH
T ss_pred CCCCCcHHHHHHHHHHh---hhhcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEecccccccccccCH
Confidence 47999999999988775 344 5688888865543 33333322 33211 00001 4566
Q ss_pred HHHHHHHHHHhcc-CcEEEEEcCCCch
Q 005367 62 EEKAQDIFKTLSK-KKFALLLDDLWER 87 (700)
Q Consensus 62 ~~~~~~l~~~l~~-~r~LlVlDdv~~~ 87 (700)
++....+.+.++. +...+|+|.+...
T Consensus 101 ~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 101 EELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp HHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 7777777777654 4578999987443
No 370
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=87.56 E-value=1.6 Score=46.71 Aligned_cols=85 Identities=14% Similarity=0.204 Sum_probs=50.9
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCCC------------CCCCCccHH-----H
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIRKKIGLCN------------DSWKNKSLE-----E 63 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~------------~~~~~~~~~-----~ 63 (700)
+|+|||+|+.+++.... +.+-+.++++-+++.. ...++.+.+...-.... ...+..-.. -
T Consensus 170 ~GvGKs~L~~~~~~~~~--~~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~~~R~~a~~ 247 (494)
T CHL00060 170 AGVGKTVLIMELINNIA--KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGL 247 (494)
T ss_pred CCCChhHHHHHHHHHHH--HhcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCCHHHHHHHHH
Confidence 69999999999888841 1223788888887776 47777777776221110 010111111 1
Q ss_pred HHHHHHHHhc--c-CcEEEEEcCCCchh
Q 005367 64 KAQDIFKTLS--K-KKFALLLDDLWERV 88 (700)
Q Consensus 64 ~~~~l~~~l~--~-~r~LlVlDdv~~~~ 88 (700)
..-.+.+.++ + +.+||++||+....
T Consensus 248 ~A~tiAEyfrd~g~~~VLll~DslTR~A 275 (494)
T CHL00060 248 TALTMAEYFRDVNKQDVLLFIDNIFRFV 275 (494)
T ss_pred HHHHHHHHHHHcCCCCEEEEcccchHHH
Confidence 1222455552 3 48999999996653
No 371
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=87.48 E-value=0.99 Score=47.73 Aligned_cols=86 Identities=14% Similarity=0.184 Sum_probs=49.7
Q ss_pred CCCcHHHHHHHHHhhcc-------c---CCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCC------CCCCCccHHH--
Q 005367 2 GGVGKTTLLTQINNKFV-------D---NPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCN------DSWKNKSLEE-- 63 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~-------~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~-- 63 (700)
+|+|||+|+.+++.... + .++.-..++++-+++.....+.+...+..-+.-. ...+......
T Consensus 150 sGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd~p~~~R~~ 229 (466)
T TIGR01040 150 AGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLANDPTIERII 229 (466)
T ss_pred CCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHH
Confidence 69999999999988762 0 0111126677777777666666666666554111 1111111111
Q ss_pred ---HHHHHHHHh---ccCcEEEEEcCCCch
Q 005367 64 ---KAQDIFKTL---SKKKFALLLDDLWER 87 (700)
Q Consensus 64 ---~~~~l~~~l---~~~r~LlVlDdv~~~ 87 (700)
..-.+.+.+ +++.+|+++||+...
T Consensus 230 a~~~a~tiAEyfr~~~G~~VLl~~DslTr~ 259 (466)
T TIGR01040 230 TPRLALTTAEYLAYQCEKHVLVILTDMSSY 259 (466)
T ss_pred HHhhhHHHHHHHHHhcCCcEEEeccChHHH
Confidence 111233444 468999999999655
No 372
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=87.47 E-value=2.7 Score=44.81 Aligned_cols=84 Identities=14% Similarity=0.241 Sum_probs=49.8
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCCC-----CCCCCccHH-----HHHHHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIRKKIGLCN-----DSWKNKSLE-----EKAQDIFK 70 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~-----~~~~~~~~~-----~~~~~l~~ 70 (700)
+|+|||+|+.+++..... ++-+.++++-+++.. ...++++.+...-.... ...+..-.. ...-.+.+
T Consensus 153 ~GvGKt~Ll~~i~~~~~~--~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~~a~tiAE 230 (463)
T PRK09280 153 AGVGKTVLIQELINNIAK--EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVALTGLTMAE 230 (463)
T ss_pred CCCChhHHHHHHHHHHHh--cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 699999999998877621 122567777776665 47777777766432110 111111111 11122444
Q ss_pred Hh---ccCcEEEEEcCCCch
Q 005367 71 TL---SKKKFALLLDDLWER 87 (700)
Q Consensus 71 ~l---~~~r~LlVlDdv~~~ 87 (700)
.+ +++.+||++|++...
T Consensus 231 yfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 231 YFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHhcCCceEEEecchHHH
Confidence 44 578999999999655
No 373
>PHA02518 ParA-like protein; Provisional
Probab=87.26 E-value=0.74 Score=43.96 Aligned_cols=38 Identities=26% Similarity=0.281 Sum_probs=27.9
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQ 42 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 42 (700)
||+||||+|..++... ...-..+.-|+.....+.....
T Consensus 10 GGvGKTT~a~~la~~l---a~~g~~vlliD~D~q~~~~~~~ 47 (211)
T PHA02518 10 GGAGKTTVATNLASWL---HADGHKVLLVDLDPQGSSTDWA 47 (211)
T ss_pred CCCCHHHHHHHHHHHH---HhCCCeEEEEeCCCCCChHHHH
Confidence 8999999999998877 2333467778877666665543
No 374
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=87.26 E-value=1.3 Score=48.98 Aligned_cols=103 Identities=19% Similarity=0.143 Sum_probs=56.6
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCC----------------C--C---CCCcc
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCN----------------D--S---WKNKS 60 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~----------------~--~---~~~~~ 60 (700)
+|+|||++|.+++.... .++-+.++||+..++. +++.+.+. .++... . . ....+
T Consensus 40 pGsGKT~l~~qf~~~~~--~~~ge~~lyis~ee~~--~~i~~~~~-~~g~d~~~~~~~g~l~~~~~~~~~~~~~~~~~~~ 114 (509)
T PRK09302 40 AGTGKTLFALQFLVNGI--KRFDEPGVFVTFEESP--EDIIRNVA-SFGWDLQKLIDEGKLFILDASPDPSEQEEAGEYD 114 (509)
T ss_pred CCCCHHHHHHHHHHHHH--HhcCCCEEEEEccCCH--HHHHHHHH-HcCCCHHHHhhCCeEEEEecCccccccccccccc
Confidence 79999999999987751 2225788999876643 33333322 222210 0 0 01123
Q ss_pred HHHHHHHHHHHhcc-CcEEEEEcCCCchh-----------hhhhhcCcCCC-CcEEEEecCc
Q 005367 61 LEEKAQDIFKTLSK-KKFALLLDDLWERV-----------DLKKIGVPLPK-NSAVVFTTRF 109 (700)
Q Consensus 61 ~~~~~~~l~~~l~~-~r~LlVlDdv~~~~-----------~~~~l~~~~~~-gs~iiiTTr~ 109 (700)
.++....+...... +.-.+|+|.+.... .+..+...+.. |..+|+|+..
T Consensus 115 ~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~d~~~~~r~~l~~L~~~Lk~~g~TvLlt~~~ 176 (509)
T PRK09302 115 LEALFIRIEYAIDKIGAKRVVLDSIEALFSGFSNEAVVRRELRRLFAWLKQKGVTAVITGER 176 (509)
T ss_pred HHHHHHHHHHHHHhhCCCEEEECCHHHHHhhccCHHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 45555556555543 44579999996421 12222222222 7888888753
No 375
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=87.24 E-value=2.1 Score=42.97 Aligned_cols=79 Identities=23% Similarity=0.218 Sum_probs=41.7
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~Ll 79 (700)
++|+||||++.+++..... +..-..+..|+..... .....+....+.++.+.. ...+..++.+.+. .+.+ .=++
T Consensus 202 ptGvGKTTt~~kLa~~~~~-~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l~~~l~-~~~~-~d~v 276 (282)
T TIGR03499 202 PTGVGKTTTLAKLAARFVL-EHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--VARDPKELRKALD-RLRD-KDLI 276 (282)
T ss_pred CCCCCHHHHHHHHHHHHHH-HcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--ccCCHHHHHHHHH-HccC-CCEE
Confidence 4799999999999888721 1112356666654432 233344444555554432 1223334433333 3333 3577
Q ss_pred EEcCC
Q 005367 80 LLDDL 84 (700)
Q Consensus 80 VlDdv 84 (700)
++|..
T Consensus 277 liDt~ 281 (282)
T TIGR03499 277 LIDTA 281 (282)
T ss_pred EEeCC
Confidence 77753
No 376
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=87.14 E-value=1.4 Score=41.79 Aligned_cols=16 Identities=31% Similarity=0.708 Sum_probs=14.5
Q ss_pred CCCcHHHHHHHHHhhc
Q 005367 2 GGVGKTTLLTQINNKF 17 (700)
Q Consensus 2 gGiGKT~La~~~~~~~ 17 (700)
-|+|||+|++++...+
T Consensus 94 RGtGKSSLVKA~~~e~ 109 (287)
T COG2607 94 RGTGKSSLVKALLNEY 109 (287)
T ss_pred CCCChHHHHHHHHHHH
Confidence 3899999999999988
No 377
>PRK12678 transcription termination factor Rho; Provisional
Probab=87.01 E-value=0.95 Score=48.99 Aligned_cols=84 Identities=23% Similarity=0.234 Sum_probs=42.4
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEE-EEEeCCc-cCHHHHHHHHHHHcCCCCCCCCCccH----HHHHHHHHHHh--
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVI-WVVVSKD-LQLEKIQETIRKKIGLCNDSWKNKSL----EEKAQDIFKTL-- 72 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~-wv~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~l~~~l-- 72 (700)
.+|+|||+|+..|++.... .+-++.+ .+-+.+. ..+.++...+-..+-... ....... ..+.-.+.+++
T Consensus 424 pp~aGKTtLL~~IAn~i~~--n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT-~D~p~~~~~~~a~~ai~~Ae~fre 500 (672)
T PRK12678 424 PPKAGKTTILQNIANAITT--NNPECHLMVVLVDERPEEVTDMQRSVKGEVIAST-FDRPPSDHTTVAELAIERAKRLVE 500 (672)
T ss_pred CCCCCHHHHHHHHHHHHhh--cCCCeEEEEEEEeCchhhHHHHHHhccceEEEEC-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999987522 2223333 3334443 345554333311111111 0011111 12222233444
Q ss_pred ccCcEEEEEcCCCch
Q 005367 73 SKKKFALLLDDLWER 87 (700)
Q Consensus 73 ~~~r~LlVlDdv~~~ 87 (700)
.++.+||++|++...
T Consensus 501 ~G~dVlillDSlTR~ 515 (672)
T PRK12678 501 LGKDVVVLLDSITRL 515 (672)
T ss_pred cCCCEEEEEeCchHH
Confidence 578999999998654
No 378
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.90 E-value=2.1 Score=39.26 Aligned_cols=48 Identities=17% Similarity=0.152 Sum_probs=29.3
Q ss_pred HHHHhccCcEEEEEcCCCch------hhhhhhcCcCCCCcEEEEecCchhhhhc
Q 005367 68 IFKTLSKKKFALLLDDLWER------VDLKKIGVPLPKNSAVVFTTRFVDVCGR 115 (700)
Q Consensus 68 l~~~l~~~r~LlVlDdv~~~------~~~~~l~~~~~~gs~iiiTTr~~~~~~~ 115 (700)
+.+.+..+.-++++|+-... ..+..+...+..+..||++|.+.+....
T Consensus 107 la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 107 IARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 45556667779999976433 2233333333346778888887666543
No 379
>PRK14526 adenylate kinase; Provisional
Probab=86.82 E-value=2.5 Score=40.32 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.++..+
T Consensus 8 ~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 8 PPGSGKGTIAKILSNEL 24 (211)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999999876
No 380
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=86.79 E-value=1 Score=40.00 Aligned_cols=38 Identities=18% Similarity=0.364 Sum_probs=28.0
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCC
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLC 52 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~ 52 (700)
++|+||||+|+.++++. . +. ..+.-.++++|++..+..
T Consensus 8 ~pGsG~TTva~~lAe~~---g--l~---------~vsaG~iFR~~A~e~gms 45 (179)
T COG1102 8 LPGSGKTTVARELAEHL---G--LK---------LVSAGTIFREMARERGMS 45 (179)
T ss_pred CCCCChhHHHHHHHHHh---C--Cc---------eeeccHHHHHHHHHcCCC
Confidence 58999999999999998 1 11 123345678888888764
No 381
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=86.69 E-value=11 Score=37.83 Aligned_cols=63 Identities=11% Similarity=0.087 Sum_probs=36.2
Q ss_pred cCcEEEEEcCCCchh--hhhhhcCc---CCCCcEEEEecCch-hhhhcccCc-ceEeccCCChHhHHHHHH
Q 005367 74 KKKFALLLDDLWERV--DLKKIGVP---LPKNSAVVFTTRFV-DVCGRMEAR-RTFKVECLSDEAAWELFR 137 (700)
Q Consensus 74 ~~r~LlVlDdv~~~~--~~~~l~~~---~~~gs~iiiTTr~~-~~~~~~~~~-~~~~l~~L~~~~a~~l~~ 137 (700)
+++-.+|+|+++... ....+.+- .|++..+|.+|.+. .+...+.+. ..+.+.. +.++..+.+.
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 566799999998763 34444333 34466666666543 444444332 3566665 5666555554
No 382
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=86.68 E-value=0.6 Score=41.37 Aligned_cols=17 Identities=53% Similarity=0.731 Sum_probs=15.9
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
|+|+||||++.++++..
T Consensus 13 ~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 13 RPGVGKTTLVLKIAEKL 29 (179)
T ss_pred CCCccHHHHHHHHHHHH
Confidence 79999999999999887
No 383
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=86.56 E-value=4.5 Score=44.46 Aligned_cols=139 Identities=13% Similarity=0.125 Sum_probs=68.7
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
++|+|||.||++++-.. .-.| +..+.+ +..+.+-... .....+...+..++-.++++
T Consensus 191 pPGTGKTLLAkAvAgEA---~VPF-----f~iSGS--------~FVemfVGvG-------AsRVRdLF~qAkk~aP~IIF 247 (596)
T COG0465 191 PPGTGKTLLAKAVAGEA---GVPF-----FSISGS--------DFVEMFVGVG-------ASRVRDLFEQAKKNAPCIIF 247 (596)
T ss_pred CCCCCcHHHHHHHhccc---CCCc-----eeccch--------hhhhhhcCCC-------cHHHHHHHHHhhccCCCeEE
Confidence 58999999999999987 2222 111111 1122221111 11222333444456678999
Q ss_pred EcCCCchh------------h----hhhh---cCcCCC--CcEEEEecCchhhhhcc-----cCcceEeccCCChHhHHH
Q 005367 81 LDDLWERV------------D----LKKI---GVPLPK--NSAVVFTTRFVDVCGRM-----EARRTFKVECLSDEAAWE 134 (700)
Q Consensus 81 lDdv~~~~------------~----~~~l---~~~~~~--gs~iiiTTr~~~~~~~~-----~~~~~~~l~~L~~~~a~~ 134 (700)
+|.++... + +.++ ...|.. |-.||..|..++|.+.. +-++.+.++.-+...-.+
T Consensus 248 IDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~ 327 (596)
T COG0465 248 IDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQ 327 (596)
T ss_pred EehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHH
Confidence 99886441 1 1222 122333 22333345556665332 234566666666666666
Q ss_pred HHHHHhcccccCCCCChHHHHHHHHHHhCCCc
Q 005367 135 LFREKVGEETIESHHSIPELAQTVAKECGGLP 166 (700)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 166 (700)
.++-++-.......-+.. .|++..-|.-
T Consensus 328 IlkvH~~~~~l~~~Vdl~----~iAr~tpGfs 355 (596)
T COG0465 328 ILKVHAKNKPLAEDVDLK----KIARGTPGFS 355 (596)
T ss_pred HHHHHhhcCCCCCcCCHH----HHhhhCCCcc
Confidence 666555333322222222 2777776654
No 384
>PRK00889 adenylylsulfate kinase; Provisional
Probab=86.54 E-value=2.5 Score=39.02 Aligned_cols=17 Identities=35% Similarity=0.677 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|++++...
T Consensus 12 ~~GsGKST~a~~la~~l 28 (175)
T PRK00889 12 LSGAGKTTIARALAEKL 28 (175)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999999987
No 385
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=86.43 E-value=2.5 Score=38.88 Aligned_cols=48 Identities=13% Similarity=0.119 Sum_probs=28.2
Q ss_pred HHHHHhccCcEEEEEcCCCch------hhhhhhcCcC-CCCcEEEEecCchhhhh
Q 005367 67 DIFKTLSKKKFALLLDDLWER------VDLKKIGVPL-PKNSAVVFTTRFVDVCG 114 (700)
Q Consensus 67 ~l~~~l~~~r~LlVlDdv~~~------~~~~~l~~~~-~~gs~iiiTTr~~~~~~ 114 (700)
.+.+.+..+.=++++|+-... ..+..+...+ ..|..||++|.+.+...
T Consensus 106 ~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 106 GLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 345556666678899977543 2222222222 23778888888776654
No 386
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=86.32 E-value=0.54 Score=42.07 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=22.4
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVV 31 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~ 31 (700)
++|.||||||+++.++. ......+.+++
T Consensus 10 lsGsGKtTlA~~L~~~L---~~~g~~~~~LD 37 (156)
T PF01583_consen 10 LSGSGKTTLARALERRL---FARGIKVYLLD 37 (156)
T ss_dssp STTSSHHHHHHHHHHHH---HHTTS-EEEEE
T ss_pred CCCCCHHHHHHHHHHHH---HHcCCcEEEec
Confidence 57999999999999998 55556777776
No 387
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=86.24 E-value=7.7 Score=41.30 Aligned_cols=52 Identities=13% Similarity=0.124 Sum_probs=28.6
Q ss_pred HHHHHHHhccCcEEEEEcCC----Cchhh---hhhhcCcCCCCcEEEEecCchhhhhcc
Q 005367 65 AQDIFKTLSKKKFALLLDDL----WERVD---LKKIGVPLPKNSAVVFTTRFVDVCGRM 116 (700)
Q Consensus 65 ~~~l~~~l~~~r~LlVlDdv----~~~~~---~~~l~~~~~~gs~iiiTTr~~~~~~~~ 116 (700)
.-.+.+.+=+..+|+|||.= +...+ .+.+...=..|+.+|+.|-.+++...+
T Consensus 480 RIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~ 538 (580)
T COG4618 480 RIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASV 538 (580)
T ss_pred HHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhc
Confidence 33466677788999999954 33311 222211111266666656556666544
No 388
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=86.23 E-value=2.5 Score=41.05 Aligned_cols=49 Identities=16% Similarity=0.169 Sum_probs=31.4
Q ss_pred HHHHHHHhccCcEEEEEcCC----C--chhhhhhhcCcCCC-CcEEEEecCchhhh
Q 005367 65 AQDIFKTLSKKKFALLLDDL----W--ERVDLKKIGVPLPK-NSAVVFTTRFVDVC 113 (700)
Q Consensus 65 ~~~l~~~l~~~r~LlVlDdv----~--~~~~~~~l~~~~~~-gs~iiiTTr~~~~~ 113 (700)
.-.+.+.|.++.=|+|||.= + ...++-.+...+.. |..||+.|-+-...
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v 202 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLV 202 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHh
Confidence 33467788888999999943 2 22334444343333 88999999775543
No 389
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=86.22 E-value=4.5 Score=41.34 Aligned_cols=41 Identities=22% Similarity=0.315 Sum_probs=31.6
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc-CHHHHHHHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIRK 47 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~ 47 (700)
.|+|||+|+.++++.. +-+.++++-+++.. .+.+++.++-+
T Consensus 166 ~G~GKT~L~~~Iak~~-----~~dvvVyv~iGERg~Ev~e~l~ef~~ 207 (369)
T cd01134 166 FGCGKTVIQQSLSKYS-----NSDIVIYVGCGERGNEMTEVLEEFPE 207 (369)
T ss_pred CCCChHHHHHHHHhCC-----CCCEEEEEEeCCChHHHHHHHHHHHh
Confidence 6999999999999875 33578888887765 47777777654
No 390
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=86.20 E-value=5.8 Score=42.80 Aligned_cols=80 Identities=19% Similarity=0.189 Sum_probs=41.9
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCc-cCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD-LQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~Ll 79 (700)
+.|+||||++.+++..+. .+.....+..|..... ....+.+....+.++.+... .....+....+ ..+.++ -.+
T Consensus 264 pnGvGKTTTiaKLA~~~~-~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~--~~~~~Dl~~aL-~~L~d~-d~V 338 (484)
T PRK06995 264 PTGVGKTTTTAKLAARCV-MRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHA--VKDAADLRLAL-SELRNK-HIV 338 (484)
T ss_pred CCCccHHHHHHHHHHHHH-HhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeec--cCCchhHHHHH-HhccCC-CeE
Confidence 469999999999998762 1222234556654432 23445556666666554311 11222222222 233333 466
Q ss_pred EEcCCC
Q 005367 80 LLDDLW 85 (700)
Q Consensus 80 VlDdv~ 85 (700)
++|-.-
T Consensus 339 LIDTaG 344 (484)
T PRK06995 339 LIDTIG 344 (484)
T ss_pred EeCCCC
Confidence 777654
No 391
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=86.17 E-value=0.89 Score=44.82 Aligned_cols=17 Identities=35% Similarity=0.690 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|++++...
T Consensus 7 ~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 7 LPGVGKSTFSKELAKKL 23 (249)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999999887
No 392
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=86.11 E-value=2.8 Score=41.06 Aligned_cols=43 Identities=14% Similarity=0.207 Sum_probs=29.3
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHH
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRK 47 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 47 (700)
.+|+|||++|.+++.+.. .+.-..++|++... +..++...++.
T Consensus 21 ~~G~GKT~~~~~~~~~~~--~~~g~~vly~s~E~--~~~~~~~r~~~ 63 (242)
T cd00984 21 RPSMGKTAFALNIAENIA--KKQGKPVLFFSLEM--SKEQLLQRLLA 63 (242)
T ss_pred CCCCCHHHHHHHHHHHHH--HhCCCceEEEeCCC--CHHHHHHHHHH
Confidence 479999999999988862 22245778887655 44455555543
No 393
>COG3910 Predicted ATPase [General function prediction only]
Probab=86.08 E-value=4.3 Score=37.17 Aligned_cols=122 Identities=12% Similarity=0.138 Sum_probs=58.8
Q ss_pred CCCcHHHHHHHHHhhcc----cCCCCC-----------------------CEEEEEEeCCccCHHHHHHHHHHHcCCCCC
Q 005367 2 GGVGKTTLLTQINNKFV----DNPTDF-----------------------DYVIWVVVSKDLQLEKIQETIRKKIGLCND 54 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~----~~~~~f-----------------------~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~ 54 (700)
.|+|||||..+++--.. -..+.| ...+|..+.+-.+...-+.+.....+...+
T Consensus 46 NGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~~g~FlRAEs~yn~as~~De~~~e~~~~~~ 125 (233)
T COG3910 46 NGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIGFFLRAESFYNVASYLDEADGEANYGGR 125 (233)
T ss_pred CCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhcCCCCcceEEehhHHHHHHHHHHhhhhhcccCCc
Confidence 49999999999876531 011111 122333333333444444444433332222
Q ss_pred CCCCccHHHH-HHHHHHHhccCcEEEEEcCCCch----hhhhh---hcCcCCCCcEEEEecCchhhhhcccCcceEecc
Q 005367 55 SWKNKSLEEK-AQDIFKTLSKKKFALLLDDLWER----VDLKK---IGVPLPKNSAVVFTTRFVDVCGRMEARRTFKVE 125 (700)
Q Consensus 55 ~~~~~~~~~~-~~~l~~~l~~~r~LlVlDdv~~~----~~~~~---l~~~~~~gs~iiiTTr~~~~~~~~~~~~~~~l~ 125 (700)
+....+.-+. ...+..++ ++.-+.|+|.=... .|++- +......|++|||.|-.+-+.. +.....|++.
T Consensus 126 sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlA-iP~A~I~~~~ 202 (233)
T COG3910 126 SLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLA-IPGAEIYEIS 202 (233)
T ss_pred chhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhhee-CCCcEEEEEe
Confidence 2222222222 33333333 45567888976433 23332 2223445999999998766543 3333444443
No 394
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=86.08 E-value=1.6 Score=50.18 Aligned_cols=74 Identities=18% Similarity=0.199 Sum_probs=49.1
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCc-EEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKK-FAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r-~Ll 79 (700)
+-|+|||.||++++.-. .+..+..+-|+.++-.. +.+.++.+ ..-.-.+....+.+.++++. ..|
T Consensus 599 pdgvGKt~lAkaLA~~~---Fgse~~~IriDmse~~e-------vskligsp----~gyvG~e~gg~LteavrrrP~sVV 664 (898)
T KOG1051|consen 599 PDGVGKTELAKALAEYV---FGSEENFIRLDMSEFQE-------VSKLIGSP----PGYVGKEEGGQLTEAVKRRPYSVV 664 (898)
T ss_pred CCchhHHHHHHHHHHHH---cCCccceEEechhhhhh-------hhhccCCC----cccccchhHHHHHHHHhcCCceEE
Confidence 46999999999999998 77777778776554322 33333332 12223344556677777665 588
Q ss_pred EEcCCCchh
Q 005367 80 LLDDLWERV 88 (700)
Q Consensus 80 VlDdv~~~~ 88 (700)
.||||+..+
T Consensus 665 LfdeIEkAh 673 (898)
T KOG1051|consen 665 LFEEIEKAH 673 (898)
T ss_pred EEechhhcC
Confidence 889997663
No 395
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=86.05 E-value=1.4 Score=46.69 Aligned_cols=84 Identities=21% Similarity=0.296 Sum_probs=50.8
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCCC-----CCCCCccHH-----HHHHHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIRKKIGLCN-----DSWKNKSLE-----EKAQDIFK 70 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~-----~~~~~~~~~-----~~~~~l~~ 70 (700)
+|+|||+|+.+++.... +.+-+.++++-+++.. ...++.+.+...-.... ...+..... ...-.+.+
T Consensus 147 ~G~GKt~l~~~~~~~~~--~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~~a~tiAE 224 (449)
T TIGR03305 147 AGVGKTVLLTEMIHNMV--GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGHTALTMAE 224 (449)
T ss_pred CCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 69999999999988862 2334788888887766 46667766665321110 111111111 11122334
Q ss_pred Hh---ccCcEEEEEcCCCch
Q 005367 71 TL---SKKKFALLLDDLWER 87 (700)
Q Consensus 71 ~l---~~~r~LlVlDdv~~~ 87 (700)
.+ +++++|+|+||+...
T Consensus 225 yfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 225 YFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHhcCCceEEEecChHHH
Confidence 43 468999999999665
No 396
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=85.98 E-value=2.7 Score=44.03 Aligned_cols=81 Identities=19% Similarity=0.192 Sum_probs=47.7
Q ss_pred CCCCcHHHHHHHHHhhcccCC-CCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNP-TDFDYVIWVVVSKDL-QLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFA 78 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~-~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~L 78 (700)
+.|+||||.+.+++..+.... .+-..+..|++.... .....+...++.++.+.. .....++....+.+. ++.-+
T Consensus 182 ptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~L~~~--~~~Dl 257 (388)
T PRK12723 182 PTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEEITQS--KDFDL 257 (388)
T ss_pred CCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHHHHHh--CCCCE
Confidence 479999999999998872211 233466666655432 233446666666766432 223344444444433 45568
Q ss_pred EEEcCCC
Q 005367 79 LLLDDLW 85 (700)
Q Consensus 79 lVlDdv~ 85 (700)
+|+|-+-
T Consensus 258 VLIDTaG 264 (388)
T PRK12723 258 VLVDTIG 264 (388)
T ss_pred EEEcCCC
Confidence 8899773
No 397
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.85 E-value=1.3 Score=41.10 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=27.1
Q ss_pred HHHHhccCcEEEEEcCCCch------hhhhhhcCcC-CC-CcEEEEecCchhhhh
Q 005367 68 IFKTLSKKKFALLLDDLWER------VDLKKIGVPL-PK-NSAVVFTTRFVDVCG 114 (700)
Q Consensus 68 l~~~l~~~r~LlVlDdv~~~------~~~~~l~~~~-~~-gs~iiiTTr~~~~~~ 114 (700)
+.+.+..+.=++++|+-... ..+..+...+ .. |..||++|.+.+...
T Consensus 111 la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 111 LARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 45556667788999976433 2222222222 22 577888887765544
No 398
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=85.85 E-value=3.3 Score=38.86 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.++.++
T Consensus 7 ~pGsGKst~a~~La~~~ 23 (194)
T cd01428 7 PPGSGKGTQAERLAKKY 23 (194)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 58999999999999986
No 399
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=85.77 E-value=3.3 Score=42.49 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|.||||+|+.+.+..
T Consensus 7 l~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 7 LPAAGKSTLARSLSATL 23 (340)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999999886
No 400
>PRK06217 hypothetical protein; Validated
Probab=85.72 E-value=1 Score=41.94 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|.||||+|++++...
T Consensus 9 ~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 9 ASGSGTTTLGAALAERL 25 (183)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 47999999999999986
No 401
>PRK03839 putative kinase; Provisional
Probab=85.69 E-value=0.49 Score=43.95 Aligned_cols=17 Identities=41% Similarity=0.577 Sum_probs=16.1
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
|+|+||||+|++++++.
T Consensus 8 ~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 8 TPGVGKTTVSKLLAEKL 24 (180)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 68999999999999997
No 402
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=85.63 E-value=3.1 Score=43.09 Aligned_cols=80 Identities=16% Similarity=0.056 Sum_probs=47.9
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccCcEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTL-SKKKFA 78 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~L 78 (700)
+.|+||||++..++... ...-..+.+|++.... .....++..++.++.+.. ...+..+..+.+...- .+..=+
T Consensus 214 ptGvGKTTt~akLA~~l---~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al~~l~~~~~~D~ 288 (407)
T PRK12726 214 QTGVGKTTTLVKLGWQL---LKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELEEAVQYMTYVNCVDH 288 (407)
T ss_pred CCCCCHHHHHHHHHHHH---HHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHHHHHHhcCCCCE
Confidence 46999999999999876 2223467777765443 345566666776665432 2234455544443332 134467
Q ss_pred EEEcCCC
Q 005367 79 LLLDDLW 85 (700)
Q Consensus 79 lVlDdv~ 85 (700)
+++|-.-
T Consensus 289 VLIDTAG 295 (407)
T PRK12726 289 ILIDTVG 295 (407)
T ss_pred EEEECCC
Confidence 8888663
No 403
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=85.51 E-value=2.7 Score=48.63 Aligned_cols=21 Identities=0% Similarity=0.268 Sum_probs=17.8
Q ss_pred ceEeccCCChHhHHHHHHHHh
Q 005367 120 RTFKVECLSDEAAWELFREKV 140 (700)
Q Consensus 120 ~~~~l~~L~~~~a~~l~~~~~ 140 (700)
..+++.+++++|-.++..++.
T Consensus 486 ~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 486 EVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred eeeecCCCCHHHHHHHHHHhh
Confidence 578999999999888877776
No 404
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=85.50 E-value=3.5 Score=43.60 Aligned_cols=82 Identities=23% Similarity=0.267 Sum_probs=47.6
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCCC-----CCCCCccHH-----HHHHHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIRKKIGLCN-----DSWKNKSLE-----EKAQDIFK 70 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~-----~~~~~~~~~-----~~~~~l~~ 70 (700)
.|+|||||++.++... ..+.++.+-+++.. ...++.+.++..-+... ...+..-.. ...-.+.+
T Consensus 171 sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~A~tiAE 245 (444)
T PRK08972 171 SGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCETATTIAE 245 (444)
T ss_pred CCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 6999999999998764 23566667676665 45666666654422110 111111111 11112333
Q ss_pred Hh--ccCcEEEEEcCCCchh
Q 005367 71 TL--SKKKFALLLDDLWERV 88 (700)
Q Consensus 71 ~l--~~~r~LlVlDdv~~~~ 88 (700)
.+ +++.+|+++||+....
T Consensus 246 yfrd~G~~VLl~~DslTR~A 265 (444)
T PRK08972 246 YFRDQGLNVLLLMDSLTRYA 265 (444)
T ss_pred HHHHcCCCEEEEEcChHHHH
Confidence 33 5799999999996553
No 405
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=85.45 E-value=2.1 Score=38.33 Aligned_cols=17 Identities=29% Similarity=0.659 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
.+|+||||+|+.+....
T Consensus 7 ~~GsGKSTla~~L~~~l 23 (149)
T cd02027 7 LSGSGKSTIARALEEKL 23 (149)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999999986
No 406
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=85.30 E-value=1.6 Score=41.66 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.++.++
T Consensus 7 ~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 7 PPGSGKGTQAKRIAEKY 23 (210)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 58999999999999887
No 407
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=85.26 E-value=1.8 Score=39.37 Aligned_cols=103 Identities=21% Similarity=0.211 Sum_probs=52.9
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc--CHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL--QLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFA 78 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~L 78 (700)
..|.|||||.+.++-.. ......++++..... +..+ ...+.++... +-..-+...-.+.+.+-.+.-+
T Consensus 34 ~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~---~~~~~i~~~~---qLS~G~~qrl~laral~~~p~i 103 (163)
T cd03216 34 ENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRD---ARRAGIAMVY---QLSVGERQMVEIARALARNARL 103 (163)
T ss_pred CCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHH---HHhcCeEEEE---ecCHHHHHHHHHHHHHhcCCCE
Confidence 36999999999998875 233455555422111 1111 1112222211 1112222333455566667788
Q ss_pred EEEcCCCch------hhhhhhcCcC-CCCcEEEEecCchhhh
Q 005367 79 LLLDDLWER------VDLKKIGVPL-PKNSAVVFTTRFVDVC 113 (700)
Q Consensus 79 lVlDdv~~~------~~~~~l~~~~-~~gs~iiiTTr~~~~~ 113 (700)
+++|+-... ..+..+...+ ..|..||++|.+.+.+
T Consensus 104 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 104 LILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 889987543 1122222222 2377888888876643
No 408
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=85.14 E-value=0.81 Score=42.98 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=25.9
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKI 41 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 41 (700)
||+||||+|..++... ...-..++-|+..........
T Consensus 8 GG~GKTt~a~~la~~l---a~~g~~VlliD~D~~~~~~~~ 44 (195)
T PF01656_consen 8 GGVGKTTIAANLAQAL---ARKGKKVLLIDLDPQAPNLSI 44 (195)
T ss_dssp TTSSHHHHHHHHHHHH---HHTTS-EEEEEESTTSHHHHH
T ss_pred CCccHHHHHHHHHhcc---ccccccccccccCcccccHHH
Confidence 8999999999999998 335556666776554444433
No 409
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=85.09 E-value=2.3 Score=45.48 Aligned_cols=91 Identities=14% Similarity=0.156 Sum_probs=50.6
Q ss_pred CCCcHHHHHHHHHhhcccCCCCC--CEEEEEEeCCcc-CHHHHHHHHHHHcCCCC-----CCCCCccHHH-----HHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDF--DYVIWVVVSKDL-QLEKIQETIRKKIGLCN-----DSWKNKSLEE-----KAQDI 68 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f--~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~-----~~~~~~~~~~-----~~~~l 68 (700)
.|+|||+|+.++++.. ...+.+ ..++++-+++.. ...++++.+...-.... ...+...... ..-.+
T Consensus 150 ~G~GKs~L~~~ia~~~-~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a~~~a~ti 228 (458)
T TIGR01041 150 SGLPHNELAAQIARQA-TVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVTPRMALTA 228 (458)
T ss_pred CCCCHHHHHHHHHHhh-cccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 6999999999998876 211111 256667776665 46667776664332110 1111111111 11123
Q ss_pred HHHh---ccCcEEEEEcCCCchh-hhhhh
Q 005367 69 FKTL---SKKKFALLLDDLWERV-DLKKI 93 (700)
Q Consensus 69 ~~~l---~~~r~LlVlDdv~~~~-~~~~l 93 (700)
.+.+ +++++||++||+.... +..++
T Consensus 229 AEyfr~d~G~~VLli~DslTR~A~A~REI 257 (458)
T TIGR01041 229 AEYLAFEKDMHVLVILTDMTNYCEALREI 257 (458)
T ss_pred HHHHHHccCCcEEEEEcChhHHHHHHHHH
Confidence 4444 4688999999996653 34443
No 410
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=85.05 E-value=2 Score=39.35 Aligned_cols=75 Identities=17% Similarity=0.094 Sum_probs=38.3
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEEE
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALLL 81 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVl 81 (700)
.|+||+.+|+.+.+.. ...-..-+-|++..- +.+.+..+++-.-............ ..+.+ -.+--|+|
T Consensus 31 ~GtGK~~lA~~IH~~s---~r~~~pfi~vnc~~~-~~~~~e~~LFG~~~~~~~~~~~~~~----G~l~~---A~~GtL~L 99 (168)
T PF00158_consen 31 TGTGKELLARAIHNNS---PRKNGPFISVNCAAL-PEELLESELFGHEKGAFTGARSDKK----GLLEQ---ANGGTLFL 99 (168)
T ss_dssp TTSSHHHHHHHHHHCS---TTTTS-EEEEETTTS--HHHHHHHHHEBCSSSSTTTSSEBE----HHHHH---TTTSEEEE
T ss_pred CCCcHHHHHHHHHHhh---hcccCCeEEEehhhh-hcchhhhhhhccccccccccccccC----Cceee---ccceEEee
Confidence 6999999999999875 333344455665533 3344444444432211100011111 11111 24457889
Q ss_pred cCCCch
Q 005367 82 DDLWER 87 (700)
Q Consensus 82 Ddv~~~ 87 (700)
|++++.
T Consensus 100 d~I~~L 105 (168)
T PF00158_consen 100 DEIEDL 105 (168)
T ss_dssp ETGGGS
T ss_pred cchhhh
Confidence 999876
No 411
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=84.98 E-value=2.2 Score=39.06 Aligned_cols=17 Identities=35% Similarity=0.475 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+|||||+++++.+.
T Consensus 12 PSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 12 PSGVGKSTLVKALLEDD 28 (191)
T ss_pred CCCCCHHHHHHHHHhhc
Confidence 58999999999999884
No 412
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=84.87 E-value=2.7 Score=45.50 Aligned_cols=80 Identities=18% Similarity=0.183 Sum_probs=40.9
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~Ll 79 (700)
.+|+||||++.+++.... .+.....+..++..... .....+....+.++.... ...+..++...+. .+. ..-+|
T Consensus 358 PtGvGKTTtaakLAa~la-~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL~-~l~-~~DLV 432 (559)
T PRK12727 358 PTGAGKTTTIAKLAQRFA-AQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLLE-RLR-DYKLV 432 (559)
T ss_pred CCCCCHHHHHHHHHHHHH-HhcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHHHHH-Hhc-cCCEE
Confidence 479999999999988761 12223445566543322 223333333444443221 1122233333333 333 35588
Q ss_pred EEcCCC
Q 005367 80 LLDDLW 85 (700)
Q Consensus 80 VlDdv~ 85 (700)
|+|..-
T Consensus 433 LIDTaG 438 (559)
T PRK12727 433 LIDTAG 438 (559)
T ss_pred EecCCC
Confidence 888773
No 413
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=84.81 E-value=0.6 Score=41.31 Aligned_cols=17 Identities=29% Similarity=0.546 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|++++...
T Consensus 7 ~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 7 PPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHC
Confidence 58999999999999886
No 414
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=84.79 E-value=1.8 Score=40.83 Aligned_cols=69 Identities=14% Similarity=0.170 Sum_probs=39.9
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCc
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKK 76 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r 76 (700)
+|.||||+|++++... +...-.+ ++. +.+....-.....+......+....-+++...+.+...++++.
T Consensus 17 SgSGKTTva~~l~~~~---~~~~~~~--I~~-D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~ 85 (218)
T COG0572 17 SGSGKTTVAKELSEQL---GVEKVVV--ISL-DDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP 85 (218)
T ss_pred CCCCHHHHHHHHHHHh---CcCcceE--eec-cccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence 6999999999999998 4342222 211 1111122222333344444444456677777777777777776
No 415
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=84.73 E-value=0.69 Score=35.02 Aligned_cols=17 Identities=24% Similarity=0.499 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
.+|+||||+|+++.+..
T Consensus 7 ~~gsGKst~~~~l~~~l 23 (69)
T cd02019 7 GSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999999985
No 416
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=84.72 E-value=1.9 Score=38.34 Aligned_cols=91 Identities=21% Similarity=0.164 Sum_probs=46.9
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEEE
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALLL 81 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVl 81 (700)
.|.|||||++.++.... .....+|++.. ..+....+ -..-+...-.+.+.+..+.-++++
T Consensus 35 nGsGKStLl~~l~G~~~----~~~G~i~~~~~-------------~~i~~~~~---lS~G~~~rv~laral~~~p~illl 94 (144)
T cd03221 35 NGAGKSTLLKLIAGELE----PDEGIVTWGST-------------VKIGYFEQ---LSGGEKMRLALAKLLLENPNLLLL 94 (144)
T ss_pred CCCCHHHHHHHHcCCCC----CCceEEEECCe-------------EEEEEEcc---CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 69999999999988762 23444444311 01111000 111122222345555566678899
Q ss_pred cCCCch------hhhhhhcCcCCCCcEEEEecCchhhhh
Q 005367 82 DDLWER------VDLKKIGVPLPKNSAVVFTTRFVDVCG 114 (700)
Q Consensus 82 Ddv~~~------~~~~~l~~~~~~gs~iiiTTr~~~~~~ 114 (700)
|+-... ..+.++...+ +..||++|.+.+...
T Consensus 95 DEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 95 DEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred eCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 976433 2222222222 457888887666543
No 417
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=84.69 E-value=4.5 Score=43.32 Aligned_cols=83 Identities=11% Similarity=0.198 Sum_probs=45.1
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEE-EEEEeCCcc-CHHHHHHHHHHHcCCCC-----CCCCCccHHHHH-----HHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYV-IWVVVSKDL-QLEKIQETIRKKIGLCN-----DSWKNKSLEEKA-----QDIF 69 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~-----~~l~ 69 (700)
.|+|||+||....-+. ..-+.+ +++-+++.. ...++.+.+.+.-.... ...+........ -.+.
T Consensus 150 ~g~GKt~Lal~~I~~q----~~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~ap~~a~aiA 225 (485)
T CHL00059 150 RQTGKTAVATDTILNQ----KGQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLAPYTGAALA 225 (485)
T ss_pred CCCCHHHHHHHHHHhc----ccCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHHHHHHHhhHH
Confidence 6999999976533332 233555 777777655 46667666665432111 111111111111 1122
Q ss_pred HHh--ccCcEEEEEcCCCchh
Q 005367 70 KTL--SKKKFALLLDDLWERV 88 (700)
Q Consensus 70 ~~l--~~~r~LlVlDdv~~~~ 88 (700)
+.+ +++.+|+|+||+....
T Consensus 226 Eyfr~~G~~VLlv~DdlTr~A 246 (485)
T CHL00059 226 EYFMYRGRHTLIIYDDLSKQA 246 (485)
T ss_pred HHHHHcCCCEEEEEcChhHHH
Confidence 222 4789999999997663
No 418
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=84.61 E-value=0.86 Score=45.25 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=26.7
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEK 40 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 40 (700)
||+||||+|-.++...+. .+...+.-|+.....+.+.
T Consensus 12 GGvGKTT~a~nLa~~La~--~~~~kVLliDlDpQ~s~t~ 48 (259)
T COG1192 12 GGVGKTTTAVNLAAALAK--RGGKKVLLIDLDPQGSLTS 48 (259)
T ss_pred CCccHHHHHHHHHHHHHH--hcCCcEEEEeCCCcchhhH
Confidence 899999999999998821 2226778888666554443
No 419
>PRK00279 adk adenylate kinase; Reviewed
Probab=84.45 E-value=2.1 Score=40.99 Aligned_cols=17 Identities=35% Similarity=0.423 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.++.++
T Consensus 8 ~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 8 PPGAGKGTQAKFIAEKY 24 (215)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999999987
No 420
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=84.42 E-value=4.1 Score=40.23 Aligned_cols=87 Identities=14% Similarity=0.206 Sum_probs=45.5
Q ss_pred CCCcHHHHH-HHHHhhcccCCCCCCEE-EEEEeCCcc-CHHHHHHHHHHHcCCCC-----CCCCCccHHH-----HHHHH
Q 005367 2 GGVGKTTLL-TQINNKFVDNPTDFDYV-IWVVVSKDL-QLEKIQETIRKKIGLCN-----DSWKNKSLEE-----KAQDI 68 (700)
Q Consensus 2 gGiGKT~La-~~~~~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~~~~~~-----~~~~~~~~~~-----~~~~l 68 (700)
+|+|||+|| ..+++.. .-+.+ +++-+++.. ...++.+.+.+.-.... ...+..-... ..-.+
T Consensus 78 ~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~~~a~ai 152 (274)
T cd01132 78 RQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYTGCAM 152 (274)
T ss_pred CCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHHHHHHHH
Confidence 579999996 4455442 23444 556666654 56777777765432110 1101111110 11122
Q ss_pred HHHh--ccCcEEEEEcCCCchh-hhhhh
Q 005367 69 FKTL--SKKKFALLLDDLWERV-DLKKI 93 (700)
Q Consensus 69 ~~~l--~~~r~LlVlDdv~~~~-~~~~l 93 (700)
.+.+ +++.+|+|+||+.... .+.++
T Consensus 153 AE~fr~~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 153 GEYFMDNGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHHHCCCCEEEEEcChHHHHHHHHHH
Confidence 2222 4789999999996553 34444
No 421
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=84.39 E-value=0.72 Score=45.94 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+|||++++.+....
T Consensus 41 ~~GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 41 PSGTGKTSLIQNFLSSL 57 (272)
T ss_dssp STTSSHHHHHHHHHHCS
T ss_pred CCCCchhHHHHhhhccC
Confidence 47999999999998775
No 422
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=84.37 E-value=4.9 Score=36.46 Aligned_cols=17 Identities=24% Similarity=0.644 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+++....
T Consensus 6 ~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 6 VAGSGKSTIASALAHRL 22 (163)
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 57999999999999986
No 423
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=84.35 E-value=1.2 Score=42.36 Aligned_cols=37 Identities=24% Similarity=0.296 Sum_probs=28.6
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKI 41 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 41 (700)
||.||||++..++... -.+-..+.-|++.......+.
T Consensus 11 GGaGKTT~~~~LAs~l---a~~G~~V~lIDaDpn~pl~~W 47 (231)
T PF07015_consen 11 GGAGKTTAAMALASEL---AARGARVALIDADPNQPLAKW 47 (231)
T ss_pred CCCcHHHHHHHHHHHH---HHCCCeEEEEeCCCCCcHHHH
Confidence 8999999999999998 444457777777666666655
No 424
>PRK00625 shikimate kinase; Provisional
Probab=84.29 E-value=0.65 Score=42.71 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=16.0
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
|+|+||||+|+.++++.
T Consensus 8 ~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 8 LPTVGKTSFGKALAKFL 24 (173)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 78999999999999986
No 425
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.19 E-value=3.4 Score=38.00 Aligned_cols=106 Identities=17% Similarity=0.248 Sum_probs=53.7
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCC---CCCccH---------HHHHHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDS---WKNKSL---------EEKAQDIF 69 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~---------~~~~~~l~ 69 (700)
.|.|||||++.++... ......++++-....... ..+.+.++...+. ...... +...-.+.
T Consensus 35 nGsGKStLl~~l~G~~----~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv~la 107 (173)
T cd03230 35 NGAGKTTLIKIILGLL----KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRLALA 107 (173)
T ss_pred CCCCHHHHHHHHhCCC----CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHHHHHHHHHH
Confidence 6999999999998875 223455555321111110 1122222211111 011111 11222456
Q ss_pred HHhccCcEEEEEcCCCchh------hhhhhcCcC-CCCcEEEEecCchhhhh
Q 005367 70 KTLSKKKFALLLDDLWERV------DLKKIGVPL-PKNSAVVFTTRFVDVCG 114 (700)
Q Consensus 70 ~~l~~~r~LlVlDdv~~~~------~~~~l~~~~-~~gs~iiiTTr~~~~~~ 114 (700)
+.+..+.=++++|+-...- .+..+...+ ..|..||++|.+.+...
T Consensus 108 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 108 QALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 6667788899999875442 222222222 23678888888766544
No 426
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=84.08 E-value=0.96 Score=46.96 Aligned_cols=90 Identities=16% Similarity=0.262 Sum_probs=48.2
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEEE
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALLL 81 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVl 81 (700)
.|.|||.|+-.+|+..+ +.+ . ...+.-....++-+.+.... ...+.+..+.+.+.++..||.|
T Consensus 71 vG~GKT~Lmd~f~~~lp-~~~--k--------~R~HFh~Fm~~vh~~l~~~~------~~~~~l~~va~~l~~~~~lLcf 133 (362)
T PF03969_consen 71 VGRGKTMLMDLFYDSLP-IKR--K--------RRVHFHEFMLDVHSRLHQLR------GQDDPLPQVADELAKESRLLCF 133 (362)
T ss_pred CCCchhHHHHHHHHhCC-ccc--c--------ccccccHHHHHHHHHHHHHh------CCCccHHHHHHHHHhcCCEEEE
Confidence 59999999999999972 211 1 12222233333333332110 1123344555666777789999
Q ss_pred cCC--Cchhh---hhhhcCc-CCCCcEEEEecC
Q 005367 82 DDL--WERVD---LKKIGVP-LPKNSAVVFTTR 108 (700)
Q Consensus 82 Ddv--~~~~~---~~~l~~~-~~~gs~iiiTTr 108 (700)
|.+ .|..+ +..+... +..|..+|.||.
T Consensus 134 DEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN 166 (362)
T PF03969_consen 134 DEFQVTDIADAMILKRLFEALFKRGVVLVATSN 166 (362)
T ss_pred eeeeccchhHHHHHHHHHHHHHHCCCEEEecCC
Confidence 976 33333 2233222 333666666665
No 427
>PLN02459 probable adenylate kinase
Probab=83.93 E-value=3.8 Score=40.17 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.+++.+
T Consensus 37 ~PGsGK~T~a~~la~~~ 53 (261)
T PLN02459 37 CPGVGKGTYASRLSKLL 53 (261)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999999987
No 428
>PRK04040 adenylate kinase; Provisional
Probab=83.76 E-value=2.7 Score=39.25 Aligned_cols=17 Identities=47% Similarity=0.684 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+++.+++..
T Consensus 10 ~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 10 VPGVGKTTVLNKALEKL 26 (188)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999999987
No 429
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=83.71 E-value=2.9 Score=41.56 Aligned_cols=53 Identities=26% Similarity=0.349 Sum_probs=38.1
Q ss_pred CCCCcHHHHHHHHHhhcccCCC-------CCCEEEEEEeCCc-cCHHHHHHHHHHHcCCCC
Q 005367 1 MGGVGKTTLLTQINNKFVDNPT-------DFDYVIWVVVSKD-LQLEKIQETIRKKIGLCN 53 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~-------~f~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~ 53 (700)
.||+|||+|+..++-.....++ .-..+++|++... .++..-++.+..+++.+.
T Consensus 97 dsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsP 157 (402)
T COG3598 97 DSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSP 157 (402)
T ss_pred CCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCCh
Confidence 4899999999887655432222 3347788887664 468888888999888765
No 430
>PRK01184 hypothetical protein; Provisional
Probab=83.59 E-value=6.8 Score=36.40 Aligned_cols=16 Identities=31% Similarity=0.495 Sum_probs=12.7
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+ ++++.
T Consensus 9 ~~GsGKsT~a~-~~~~~ 24 (184)
T PRK01184 9 MPGSGKGEFSK-IAREM 24 (184)
T ss_pred CCCCCHHHHHH-HHHHc
Confidence 58999999987 56654
No 431
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=83.46 E-value=4.9 Score=43.27 Aligned_cols=82 Identities=16% Similarity=0.201 Sum_probs=47.5
Q ss_pred CCCcHHHHHH-HHHhhcccCCCCCCE-EEEEEeCCcc-CHHHHHHHHHHHcCCCC-----CCCCCccHHHH-----HHHH
Q 005367 2 GGVGKTTLLT-QINNKFVDNPTDFDY-VIWVVVSKDL-QLEKIQETIRKKIGLCN-----DSWKNKSLEEK-----AQDI 68 (700)
Q Consensus 2 gGiGKT~La~-~~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~-----~~~l 68 (700)
.|+|||+||. ++++.. .-+. ++++-+++.. ...++.+.+.+.-.... ...+..-.... .-.+
T Consensus 171 ~g~GKT~Lal~~I~~q~-----~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~~ap~~a~ai 245 (497)
T TIGR03324 171 RQTGKTAIAIDTILNQK-----GRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIAPYAATSI 245 (497)
T ss_pred CCCCHHHHHHHHHHHhc-----CCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4999999975 666653 3354 6777777775 46777777766532211 11111111111 1113
Q ss_pred HHHh--ccCcEEEEEcCCCchh
Q 005367 69 FKTL--SKKKFALLLDDLWERV 88 (700)
Q Consensus 69 ~~~l--~~~r~LlVlDdv~~~~ 88 (700)
.+.+ +++.+|+|+||+....
T Consensus 246 AEyfrd~G~~VLlv~DdlTr~A 267 (497)
T TIGR03324 246 GEHFMEQGRDVLIVYDDLTQHA 267 (497)
T ss_pred HHHHHhCCCCEEEEEcChhHHH
Confidence 3333 5789999999997653
No 432
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=83.46 E-value=3 Score=44.29 Aligned_cols=82 Identities=20% Similarity=0.176 Sum_probs=43.1
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHc-----CCCCCCCCCccHH----HHHHHHHHHh
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKI-----GLCNDSWKNKSLE----EKAQDIFKTL 72 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~-----~~~~~~~~~~~~~----~~~~~l~~~l 72 (700)
.|+|||||++.++... .....++++......+...+....+... ....+.....-.. ...-.+.+.+
T Consensus 174 SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a~~iAEyf 249 (450)
T PRK06002 174 SGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTATAIAEYF 249 (450)
T ss_pred CCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 6999999999888664 2233556655434445554444333322 1111111111111 1111233333
Q ss_pred --ccCcEEEEEcCCCch
Q 005367 73 --SKKKFALLLDDLWER 87 (700)
Q Consensus 73 --~~~r~LlVlDdv~~~ 87 (700)
+++.+|+++||+...
T Consensus 250 rd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 250 RDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHcCCCEEEeccchHHH
Confidence 478999999999655
No 433
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=83.37 E-value=2.2 Score=45.39 Aligned_cols=85 Identities=13% Similarity=0.241 Sum_probs=49.8
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCCC-----CCCCCccHHH-----HHHHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIRKKIGLCN-----DSWKNKSLEE-----KAQDIFK 70 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~-----~~~~~~~~~~-----~~~~l~~ 70 (700)
+|+|||+|+.+++.... .++-+.++++-+++.. ...++++.+...-.... ...+...... ..-.+.+
T Consensus 152 ~G~GKt~L~~~~~~~~~--~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~tiAE 229 (461)
T TIGR01039 152 AGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVALTGLTMAE 229 (461)
T ss_pred CCCChHHHHHHHHHHHH--hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 69999999999987752 1223467777776665 46777777754321110 1111111111 1222444
Q ss_pred Hh---ccCcEEEEEcCCCchh
Q 005367 71 TL---SKKKFALLLDDLWERV 88 (700)
Q Consensus 71 ~l---~~~r~LlVlDdv~~~~ 88 (700)
.+ +++.+|||+||+....
T Consensus 230 yfrd~~G~~VLll~DslTR~A 250 (461)
T TIGR01039 230 YFRDEQGQDVLLFIDNIFRFT 250 (461)
T ss_pred HHHHhcCCeeEEEecchhHHH
Confidence 44 4689999999996653
No 434
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=83.37 E-value=3.8 Score=35.44 Aligned_cols=30 Identities=17% Similarity=0.057 Sum_probs=21.2
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVV 31 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~ 31 (700)
..|.|||+.+..++.+.. .......++|+.
T Consensus 8 ~~G~GKT~~~~~~~~~~~-~~~~~~~~lv~~ 37 (144)
T cd00046 8 PTGSGKTLAALLPILELL-DSLKGGQVLVLA 37 (144)
T ss_pred CCCCchhHHHHHHHHHHH-hcccCCCEEEEc
Confidence 479999999999888862 223456666664
No 435
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=83.30 E-value=1.8 Score=47.34 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=46.6
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCC-------------CCCCccHHHHHHH
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCND-------------SWKNKSLEEKAQD 67 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-------------~~~~~~~~~~~~~ 67 (700)
.+|+|||+||.+++... .++-+.++++...++ ..++...+ +.++...+ .+.....++.+..
T Consensus 271 ~~G~GKt~l~~~f~~~~---~~~ge~~~y~s~eEs--~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~~~~ 344 (484)
T TIGR02655 271 ATGTGKTLLVSKFLENA---CANKERAILFAYEES--RAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESAGLEDHLQI 344 (484)
T ss_pred CCCCCHHHHHHHHHHHH---HHCCCeEEEEEeeCC--HHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccCChHHHHHH
Confidence 48999999999999987 344567777765443 33333332 44433210 1122234566666
Q ss_pred HHHHhcc-CcEEEEEcCCC
Q 005367 68 IFKTLSK-KKFALLLDDLW 85 (700)
Q Consensus 68 l~~~l~~-~r~LlVlDdv~ 85 (700)
+.+.+++ +.-.+|+|.+.
T Consensus 345 i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 345 IKSEIADFKPARIAIDSLS 363 (484)
T ss_pred HHHHHHHcCCCEEEEcCHH
Confidence 6666644 44567777764
No 436
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=83.05 E-value=3.4 Score=38.15 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
..|.|||||++.++.-.
T Consensus 33 ~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 33 PNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCChHHHHHHHHHcCC
Confidence 36999999999998875
No 437
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=83.04 E-value=3.6 Score=45.41 Aligned_cols=79 Identities=15% Similarity=0.153 Sum_probs=47.9
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCC-------------CCCCCccHHHHHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCN-------------DSWKNKSLEEKAQDI 68 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~-------------~~~~~~~~~~~~~~l 68 (700)
+|+|||++|.+++... ...-+.++||...+. ..++.+.+ ++++... ........++....+
T Consensus 282 ~G~GKT~l~~~~~~~~---~~~g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~~~~i 355 (509)
T PRK09302 282 TGTGKTLLASKFAEAA---CRRGERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEKGLLKIICARPESYGLEDHLIII 355 (509)
T ss_pred CCCCHHHHHHHHHHHH---HhCCCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhcCCceeecCCcccCCHHHHHHHH
Confidence 7999999999999876 445678899976654 33443333 3443211 111223445556666
Q ss_pred HHHhcc-CcEEEEEcCCCc
Q 005367 69 FKTLSK-KKFALLLDDLWE 86 (700)
Q Consensus 69 ~~~l~~-~r~LlVlDdv~~ 86 (700)
.+.+.. +.-++|+|.+..
T Consensus 356 ~~~i~~~~~~~vVIDslt~ 374 (509)
T PRK09302 356 KREIEEFKPSRVAIDPLSA 374 (509)
T ss_pred HHHHHHcCCCEEEEcCHHH
Confidence 665543 445788888743
No 438
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=82.98 E-value=4.3 Score=43.00 Aligned_cols=82 Identities=24% Similarity=0.246 Sum_probs=43.6
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCC-----CCCCCccHHH-----HHHHHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCN-----DSWKNKSLEE-----KAQDIFKT 71 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~-----~~~~l~~~ 71 (700)
.|+|||+|++.++... +....++...........++.+..+..-+... ...+...... ..-.+.+.
T Consensus 149 sG~GKTtLl~~I~~~~----~~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~~a~~iAEy 224 (418)
T TIGR03498 149 SGVGKSTLLSMLARNT----DADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYTATAIAEY 224 (418)
T ss_pred CCCChHHHHHHHhCCC----CCCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 6999999999888775 22233333333334446666655544322110 1111111111 11123444
Q ss_pred h--ccCcEEEEEcCCCch
Q 005367 72 L--SKKKFALLLDDLWER 87 (700)
Q Consensus 72 l--~~~r~LlVlDdv~~~ 87 (700)
+ +++.+|+|+||+...
T Consensus 225 frd~G~~Vll~~DslTr~ 242 (418)
T TIGR03498 225 FRDQGKDVLLLMDSVTRF 242 (418)
T ss_pred HHHcCCCEEEeccchhHH
Confidence 4 478999999999655
No 439
>PRK08149 ATP synthase SpaL; Validated
Probab=82.97 E-value=3.8 Score=43.42 Aligned_cols=81 Identities=16% Similarity=0.232 Sum_probs=45.2
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCC-----CCCCCCccHH-----HHHHHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIRKKIGLC-----NDSWKNKSLE-----EKAQDIFK 70 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~-----~~~~~~~~~~-----~~~~~l~~ 70 (700)
+|+|||||+..++... ..+.++...+.... +...+........... ....+..... ...-.+.+
T Consensus 160 sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~~a~tiAE 234 (428)
T PRK08149 160 AGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAALVATTVAE 234 (428)
T ss_pred CCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHHHHHHHHH
Confidence 6999999999998765 23444444444443 4666666666543211 1111111111 11222333
Q ss_pred Hh--ccCcEEEEEcCCCch
Q 005367 71 TL--SKKKFALLLDDLWER 87 (700)
Q Consensus 71 ~l--~~~r~LlVlDdv~~~ 87 (700)
.+ +++++||++||+...
T Consensus 235 ~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 235 YFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHcCCCEEEEccchHHH
Confidence 33 479999999999655
No 440
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=82.93 E-value=5.6 Score=42.28 Aligned_cols=81 Identities=19% Similarity=0.213 Sum_probs=46.0
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCCC-----CCCCCccHH-----HHHHHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIRKKIGLCN-----DSWKNKSLE-----EKAQDIFK 70 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~-----~~~~~~~~~-----~~~~~l~~ 70 (700)
.|+|||+|+++++... ..+.++++-+++.. ...++.+..+..-+... ...+..... ...-.+.+
T Consensus 167 sG~GKTtLL~~I~~~~-----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~~a~tiAE 241 (442)
T PRK08927 167 SGVGKSVLLSMLARNA-----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAYLTLAIAE 241 (442)
T ss_pred CCCCHHHHHHHHHhcc-----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 6999999999999775 23455666666654 45566655554322110 111111111 11112333
Q ss_pred Hh--ccCcEEEEEcCCCch
Q 005367 71 TL--SKKKFALLLDDLWER 87 (700)
Q Consensus 71 ~l--~~~r~LlVlDdv~~~ 87 (700)
.+ +++.+|+++||+...
T Consensus 242 yfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 242 YFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHCCCcEEEEEeCcHHH
Confidence 33 478999999999655
No 441
>PTZ00185 ATPase alpha subunit; Provisional
Probab=82.91 E-value=5.2 Score=43.02 Aligned_cols=86 Identities=13% Similarity=0.086 Sum_probs=46.5
Q ss_pred CCCcHHHHH-HHHHhhcc----cCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCC------CCCCCccHHHH-----H
Q 005367 2 GGVGKTTLL-TQINNKFV----DNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCN------DSWKNKSLEEK-----A 65 (700)
Q Consensus 2 gGiGKT~La-~~~~~~~~----~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~-----~ 65 (700)
.|+|||+|| -.+.+... ...+.-+.++++-+++..+-...+...++.-+.-. ...+..-.... .
T Consensus 198 ~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~r~~Apy~a 277 (574)
T PTZ00185 198 RQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGLQYLAPYSG 277 (574)
T ss_pred CCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHHHHHHHHHH
Confidence 599999997 55566531 01134567788888887754433555555443111 11111111111 1
Q ss_pred HHHHHHh--ccCcEEEEEcCCCch
Q 005367 66 QDIFKTL--SKKKFALLLDDLWER 87 (700)
Q Consensus 66 ~~l~~~l--~~~r~LlVlDdv~~~ 87 (700)
-.+.+.+ +++.+|+|+||+...
T Consensus 278 ~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 278 VTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHcCCCEEEEEcCchHH
Confidence 1122222 478999999999765
No 442
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=82.75 E-value=0.85 Score=38.12 Aligned_cols=17 Identities=29% Similarity=0.587 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
.+|+|||++|..++.+.
T Consensus 6 ~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 6 PPGIGKSTLAKELAKDL 22 (107)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999988886
No 443
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=82.69 E-value=2.9 Score=38.69 Aligned_cols=17 Identities=35% Similarity=0.489 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+.|+||||||+.++...
T Consensus 9 ~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 9 PSGVGKSTLVKALLEED 25 (180)
T ss_pred CCCCCHHHHHHHHHccC
Confidence 47999999999999875
No 444
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=82.52 E-value=7.7 Score=37.09 Aligned_cols=79 Identities=11% Similarity=0.134 Sum_probs=47.0
Q ss_pred HHHHHHHHHHcCCCCCC-----CCCccHHHHHHHHHHHhccCcEEEEEcCC----C--chhhhhhhcCcC-CC-CcEEEE
Q 005367 39 EKIQETIRKKIGLCNDS-----WKNKSLEEKAQDIFKTLSKKKFALLLDDL----W--ERVDLKKIGVPL-PK-NSAVVF 105 (700)
Q Consensus 39 ~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~l~~~l~~~r~LlVlDdv----~--~~~~~~~l~~~~-~~-gs~iii 105 (700)
......+++.++..... ..-..-+...-.+.+.|-...-+|+-|.= + +.+.+..+...+ .. |..||+
T Consensus 119 ~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~ 198 (226)
T COG1136 119 KRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIM 198 (226)
T ss_pred HHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEE
Confidence 34455566665554211 12223334455677888888888998843 2 223444443443 22 778999
Q ss_pred ecCchhhhhccc
Q 005367 106 TTRFVDVCGRME 117 (700)
Q Consensus 106 TTr~~~~~~~~~ 117 (700)
.|-+..++..++
T Consensus 199 VTHd~~lA~~~d 210 (226)
T COG1136 199 VTHDPELAKYAD 210 (226)
T ss_pred EcCCHHHHHhCC
Confidence 999999988764
No 445
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=82.49 E-value=7.2 Score=37.38 Aligned_cols=51 Identities=20% Similarity=0.245 Sum_probs=32.3
Q ss_pred HHHHHHHhccCcEEEEEcCCCch------hh-hhhhcCcCCC--CcEEEEecCchhhhhcc
Q 005367 65 AQDIFKTLSKKKFALLLDDLWER------VD-LKKIGVPLPK--NSAVVFTTRFVDVCGRM 116 (700)
Q Consensus 65 ~~~l~~~l~~~r~LlVlDdv~~~------~~-~~~l~~~~~~--gs~iiiTTr~~~~~~~~ 116 (700)
.-.|.+.|.-+.-+||+|..-+. .+ |+-+ ..+.. +-.+|+.|-+..++..+
T Consensus 149 RiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL-~~l~~~~~lt~l~IsHdl~~v~~~ 208 (252)
T COG1124 149 RIAIARALIPEPKLLILDEPTSALDVSVQAQILNLL-LELKKERGLTYLFISHDLALVEHM 208 (252)
T ss_pred HHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHH-HHHHHhcCceEEEEeCcHHHHHHH
Confidence 33566777778889999987544 22 3322 22222 67788888887776554
No 446
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.42 E-value=6.3 Score=40.87 Aligned_cols=81 Identities=23% Similarity=0.272 Sum_probs=50.2
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCCC-----CCCCCccHH-----HHHHHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIRKKIGLCN-----DSWKNKSLE-----EKAQDIFK 70 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~-----~~~~~~~~~-----~~~~~l~~ 70 (700)
+|+|||||.-++++.. .+|.++-.-+++.. .+.++++..+..-+... +..+..... ...-.+.+
T Consensus 172 sGVGKStLLgMiar~t-----~aDv~ViaLIGERGREVrEFIE~~Lg~egl~rsViVvATSD~s~l~R~~aa~~At~IAE 246 (441)
T COG1157 172 SGVGKSTLLGMIARNT-----EADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESALMRLKAAFTATTIAE 246 (441)
T ss_pred CCCcHHHHHHHHhccc-----cCCEEEEEEeeccchhHHHHHHHhcchhhccceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 6999999999999975 66666555555554 57777776666553321 111222111 12223445
Q ss_pred Hh--ccCcEEEEEcCCCch
Q 005367 71 TL--SKKKFALLLDDLWER 87 (700)
Q Consensus 71 ~l--~~~r~LlVlDdv~~~ 87 (700)
.. +++++||++|-+..-
T Consensus 247 yFRDqG~~VLL~mDSlTRf 265 (441)
T COG1157 247 YFRDQGKRVLLIMDSLTRF 265 (441)
T ss_pred HHHhCCCeEEEEeecHHHH
Confidence 54 479999999999544
No 447
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=82.35 E-value=3.4 Score=43.62 Aligned_cols=82 Identities=20% Similarity=0.214 Sum_probs=47.9
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccC-HHHHHHHHHHHcCCCC-----CCCCCccHH-----HHHHHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQ-LEKIQETIRKKIGLCN-----DSWKNKSLE-----EKAQDIFK 70 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~~~~~~-----~~~~~~~~~-----~~~~~l~~ 70 (700)
+|+|||+|+.++++.. .-+.++++-+++... ...+.+.+.+.-.... ...+..... -..-.+.+
T Consensus 149 aGvgk~~L~~~ia~~~-----~~~v~Vfa~iGeR~rE~~ef~~~~~~~~~l~rtvlv~~~adep~~~R~~~~~~AltiAE 223 (436)
T PRK02118 149 SGEPYNALLARIALQA-----EADIIILGGMGLTFDDYLFFKDTFENAGALDRTVMFIHTASDPPVECLLVPDMALAVAE 223 (436)
T ss_pred CCCCHHHHHHHHHHhh-----CCCeEEEEEeccchhHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 6999999999999886 225677888877653 5555555554432211 110111111 11112333
Q ss_pred Hh---ccCcEEEEEcCCCchh
Q 005367 71 TL---SKKKFALLLDDLWERV 88 (700)
Q Consensus 71 ~l---~~~r~LlVlDdv~~~~ 88 (700)
.+ .++.+|+++||+....
T Consensus 224 yfrd~g~~~VLli~DdlTr~a 244 (436)
T PRK02118 224 KFALEGKKKVLVLLTDMTNFA 244 (436)
T ss_pred HHHhcCCCCEEEeccCchHHH
Confidence 33 3488999999997663
No 448
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=82.33 E-value=6.8 Score=41.49 Aligned_cols=50 Identities=18% Similarity=0.137 Sum_probs=35.4
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCC
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCN 53 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~ 53 (700)
+.|.|||.+|..+...+ -..|...+-+-+...+=..+....+.+-++.+.
T Consensus 37 PTGLGKT~IA~~V~~~~---l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~ 86 (542)
T COG1111 37 PTGLGKTFIAAMVIANR---LRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPE 86 (542)
T ss_pred cCCccHHHHHHHHHHHH---HHhcCCeEEEecCCchHHHHHHHHHHHHhCCCh
Confidence 57999999999998865 445555444445666667777777777777654
No 449
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=82.33 E-value=2.8 Score=44.92 Aligned_cols=86 Identities=14% Similarity=0.122 Sum_probs=49.0
Q ss_pred CCCcHHHHHHHHHhhcccC-CCCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCCC-----CCCCCccHHH-----HHHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDN-PTDFDYVIWVVVSKDL-QLEKIQETIRKKIGLCN-----DSWKNKSLEE-----KAQDIF 69 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~-~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~-----~~~~~~~~~~-----~~~~l~ 69 (700)
.|+|||+|+.++++...-. ++.--.++++-+++.. ...++++.+...-.... ...+...... ..-.+.
T Consensus 152 ~G~GKs~L~~~ia~~~~~d~~~~~~v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~tiA 231 (460)
T PRK04196 152 SGLPHNELAAQIARQAKVLGEEENFAVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERILTPRMALTAA 231 (460)
T ss_pred CCCCccHHHHHHHHhhhhccCCCceEEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 6999999999998885111 1111156777777765 47777777766432110 1111111111 111244
Q ss_pred HHh---ccCcEEEEEcCCCch
Q 005367 70 KTL---SKKKFALLLDDLWER 87 (700)
Q Consensus 70 ~~l---~~~r~LlVlDdv~~~ 87 (700)
+.+ +++++|||+||+...
T Consensus 232 Eyfr~d~G~~VLli~DslTR~ 252 (460)
T PRK04196 232 EYLAFEKGMHVLVILTDMTNY 252 (460)
T ss_pred HHHHHhcCCcEEEEEcChHHH
Confidence 444 358999999999655
No 450
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=82.31 E-value=1.3 Score=44.15 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=26.3
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEK 40 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 40 (700)
||+||||+|..++.-.+ ..-..+.-|++..+.+...
T Consensus 10 GGvGKTT~~~nLA~~La---~~G~kVlliD~Dpq~n~~~ 45 (270)
T cd02040 10 GGIGKSTTTQNLSAALA---EMGKKVMIVGCDPKADSTR 45 (270)
T ss_pred CcCCHHHHHHHHHHHHH---hCCCeEEEEEcCCCCCchh
Confidence 89999999999998883 2334677777766655443
No 451
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=82.18 E-value=3.4 Score=36.19 Aligned_cols=41 Identities=22% Similarity=0.331 Sum_probs=29.0
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCC
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGL 51 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~ 51 (700)
+|+||||++.+++++. . .-|+. ++.+++.+-...|.+-+-+
T Consensus 4 sG~GKStvg~~lA~~l---g-----~~fid-GDdlHp~aNi~KM~~GiPL 44 (161)
T COG3265 4 SGSGKSTVGSALAERL---G-----AKFID-GDDLHPPANIEKMSAGIPL 44 (161)
T ss_pred CccCHHHHHHHHHHHc---C-----Cceec-ccccCCHHHHHHHhCCCCC
Confidence 6999999999999998 2 34443 4556666666666665544
No 452
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=82.18 E-value=2.1 Score=46.74 Aligned_cols=79 Identities=16% Similarity=0.110 Sum_probs=44.8
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCC-------------C--------CCCc
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCND-------------S--------WKNK 59 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-------------~--------~~~~ 59 (700)
.+|+|||++|.+++.+-. .+.-+.++||...+ +..++.+. ++.++...+ . ....
T Consensus 29 ~pGsGKT~la~qfl~~g~--~~~ge~~lyvs~eE--~~~~l~~~-~~~~G~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~ 103 (484)
T TIGR02655 29 TSGTGKTLFSIQFLYNGI--IHFDEPGVFVTFEE--SPQDIIKN-ARSFGWDLQKLVDEGKLFILDASPDPEGQDVVGGF 103 (484)
T ss_pred CCCCCHHHHHHHHHHHHH--HhCCCCEEEEEEec--CHHHHHHH-HHHcCCCHHHHhhcCceEEEecCchhccccccccC
Confidence 489999999999977641 22246888888753 33333333 233322110 0 0123
Q ss_pred cHHHHHHHHHHHhc-cCcEEEEEcCC
Q 005367 60 SLEEKAQDIFKTLS-KKKFALLLDDL 84 (700)
Q Consensus 60 ~~~~~~~~l~~~l~-~~r~LlVlDdv 84 (700)
+.+...+.+.+.+. +++-.+|||-+
T Consensus 104 ~l~~~l~~i~~~ls~g~~qRVvIDSl 129 (484)
T TIGR02655 104 DLSALIERINYAIRKYKAKRVSIDSV 129 (484)
T ss_pred CHHHHHHHHHHHHHHhCCcEEEEeeh
Confidence 44556666666664 35567888954
No 453
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=82.17 E-value=7 Score=36.02 Aligned_cols=104 Identities=18% Similarity=0.161 Sum_probs=51.8
Q ss_pred CCCCcHHHHHHHHHhhcccC--CC---CC--CEEEEEEeCCccCHHHHHHHHHHHcCCCCC--CC--CCcc-HHHHHHHH
Q 005367 1 MGGVGKTTLLTQINNKFVDN--PT---DF--DYVIWVVVSKDLQLEKIQETIRKKIGLCND--SW--KNKS-LEEKAQDI 68 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~--~~---~f--~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~--~~--~~~~-~~~~~~~l 68 (700)
+.|+|||||.+.++.+.-++ .. .| ..+.|+. + .+.++.++.... .. ..-+ -+...-.+
T Consensus 29 ~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~--q--------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~l 98 (176)
T cd03238 29 VSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFID--Q--------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKL 98 (176)
T ss_pred CCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEh--H--------HHHHHHcCCCccccCCCcCcCCHHHHHHHHH
Confidence 46999999999986431000 00 11 1233432 1 456666765321 10 1111 12222234
Q ss_pred HHHhccC--cEEEEEcCCCch------hhhhhhcCcC-CCCcEEEEecCchhhhh
Q 005367 69 FKTLSKK--KFALLLDDLWER------VDLKKIGVPL-PKNSAVVFTTRFVDVCG 114 (700)
Q Consensus 69 ~~~l~~~--r~LlVlDdv~~~------~~~~~l~~~~-~~gs~iiiTTr~~~~~~ 114 (700)
.+.+..+ .-++++|+-... ..+......+ ..|..||++|.+.+...
T Consensus 99 aral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 99 ASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 5555556 678888976433 1122221222 23778888888776654
No 454
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=82.15 E-value=2 Score=47.80 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=22.8
Q ss_pred EEEEcCCCch--hhhhhhcCcCCCCcEEEEec
Q 005367 78 ALLLDDLWER--VDLKKIGVPLPKNSAVVFTT 107 (700)
Q Consensus 78 LlVlDdv~~~--~~~~~l~~~~~~gs~iiiTT 107 (700)
+||+|.++-. ..+..+...++++.++|+.-
T Consensus 262 vlIiDEaSMvd~~l~~~ll~al~~~~rlIlvG 293 (586)
T TIGR01447 262 VLVVDEASMVDLPLMAKLLKALPPNTKLILLG 293 (586)
T ss_pred EEEEcccccCCHHHHHHHHHhcCCCCEEEEEC
Confidence 8999999754 45666777788888888765
No 455
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=81.90 E-value=6.2 Score=42.82 Aligned_cols=87 Identities=15% Similarity=0.230 Sum_probs=48.2
Q ss_pred CCCcHHHHH-HHHHhhcccCCCCCCEE-EEEEeCCcc-CHHHHHHHHHHHcCCCC-----CCCCCccHHHH-----HHHH
Q 005367 2 GGVGKTTLL-TQINNKFVDNPTDFDYV-IWVVVSKDL-QLEKIQETIRKKIGLCN-----DSWKNKSLEEK-----AQDI 68 (700)
Q Consensus 2 gGiGKT~La-~~~~~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~-----~~~l 68 (700)
.|+|||+|| -++++.. ..+.+ +++-+++.. ...++.+.+...-.... ...+..-.... .-.+
T Consensus 170 ~g~GKt~Lal~~i~~~~-----~~dv~~V~~~IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r~~a~~~a~ai 244 (501)
T TIGR00962 170 RQTGKTAVAIDTIINQK-----DSDVYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQYLAPYTGCTM 244 (501)
T ss_pred CCCCccHHHHHHHHhhc-----CCCeEEEEEEccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 499999997 4455543 34564 778777765 46777777766432110 11111111111 1112
Q ss_pred HHHh--ccCcEEEEEcCCCchh-hhhhh
Q 005367 69 FKTL--SKKKFALLLDDLWERV-DLKKI 93 (700)
Q Consensus 69 ~~~l--~~~r~LlVlDdv~~~~-~~~~l 93 (700)
.+.+ +++.+|+|+||+.... .+.++
T Consensus 245 AEyfrd~G~~VLlv~Ddltr~A~A~REi 272 (501)
T TIGR00962 245 AEYFRDNGKHALIIYDDLSKHAVAYRQI 272 (501)
T ss_pred HHHHHHcCCCEEEEecchHHHHHHHHHH
Confidence 2333 4789999999997663 34443
No 456
>PRK14531 adenylate kinase; Provisional
Probab=81.86 E-value=3.1 Score=38.70 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|.||||+|+.++..+
T Consensus 10 ~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 10 PPGAGKGTQAARLCAAH 26 (183)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999999997
No 457
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=81.83 E-value=7.6 Score=37.48 Aligned_cols=48 Identities=15% Similarity=0.159 Sum_probs=28.7
Q ss_pred HHHHhccCcEEEEEcCCCchhh-------hhhhcCcCCCCcEEEEecCchhhhhc
Q 005367 68 IFKTLSKKKFALLLDDLWERVD-------LKKIGVPLPKNSAVVFTTRFVDVCGR 115 (700)
Q Consensus 68 l~~~l~~~r~LlVlDdv~~~~~-------~~~l~~~~~~gs~iiiTTr~~~~~~~ 115 (700)
+.+.+-.+.-++++|+-.+.-+ ++.+......|..||++|.+.+.+..
T Consensus 153 laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~ 207 (224)
T cd03220 153 FAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKR 207 (224)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 5555666778999997754422 22222222236778888887665543
No 458
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=81.77 E-value=26 Score=34.58 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=14.8
Q ss_pred CCCcHHHHHHHHHhhc
Q 005367 2 GGVGKTTLLTQINNKF 17 (700)
Q Consensus 2 gGiGKT~La~~~~~~~ 17 (700)
+|.||||+|+++.+..
T Consensus 8 SGSGKTTv~~~l~~~l 23 (277)
T cd02029 8 SGAGTTTVKRAFEHIF 23 (277)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 6999999999999887
No 459
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=81.61 E-value=6 Score=40.41 Aligned_cols=81 Identities=15% Similarity=0.170 Sum_probs=40.6
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHH--HHHHHHHHHcCCCCCC-CCCccHH-HHHHHHHHHhccCc
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE--KIQETIRKKIGLCNDS-WKNKSLE-EKAQDIFKTLSKKK 76 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~i~~~~~~~~~~-~~~~~~~-~~~~~l~~~l~~~r 76 (700)
++|+||||++.+++... ...-..+..+... .+... +.+.......+.+.-. ....+.. ...+.+.....++-
T Consensus 122 pnGsGKTTt~~kLA~~l---~~~g~~V~Li~~D-~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~~~~~ 197 (318)
T PRK10416 122 VNGVGKTTTIGKLAHKY---KAQGKKVLLAAGD-TFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKARGI 197 (318)
T ss_pred CCCCcHHHHHHHHHHHH---HhcCCeEEEEecC-ccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHHhCCC
Confidence 57999999999999987 2222345555543 23221 2222334444332100 0111221 22233444444455
Q ss_pred EEEEEcCCC
Q 005367 77 FALLLDDLW 85 (700)
Q Consensus 77 ~LlVlDdv~ 85 (700)
=++|+|-.-
T Consensus 198 D~ViIDTaG 206 (318)
T PRK10416 198 DVLIIDTAG 206 (318)
T ss_pred CEEEEeCCC
Confidence 688888663
No 460
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=81.59 E-value=1.2 Score=45.25 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=23.3
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEK 40 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 40 (700)
||+||||+|.+++-..++ .-..+.-++.....+..+
T Consensus 10 GGVGKTT~aaA~A~~~A~---~G~rtLlvS~Dpa~~L~d 45 (305)
T PF02374_consen 10 GGVGKTTVAAALALALAR---RGKRTLLVSTDPAHSLSD 45 (305)
T ss_dssp TTSSHHHHHHHHHHHHHH---TTS-EEEEESSTTTHHHH
T ss_pred CCCCcHHHHHHHHHHHhh---CCCCeeEeecCCCccHHH
Confidence 899999999999888743 234466665444333333
No 461
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=81.50 E-value=6 Score=42.78 Aligned_cols=82 Identities=20% Similarity=0.244 Sum_probs=45.4
Q ss_pred CCCcHHHHH-HHHHhhcccCCCCCCEE-EEEEeCCcc-CHHHHHHHHHHHcCCCC-----CCCCCccHHHHH-----HHH
Q 005367 2 GGVGKTTLL-TQINNKFVDNPTDFDYV-IWVVVSKDL-QLEKIQETIRKKIGLCN-----DSWKNKSLEEKA-----QDI 68 (700)
Q Consensus 2 gGiGKT~La-~~~~~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~-----~~l 68 (700)
+|+|||+|| .++.+.. .-|.+ +++-+++.. ...++.+.+...-.... ............ -.+
T Consensus 171 ~g~GKt~Lal~~i~~~~-----~~dv~~V~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atsd~~~~~r~~ap~~a~ai 245 (502)
T PRK13343 171 RQTGKTAIAIDAIINQK-----DSDVICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQYLAPFAGCAI 245 (502)
T ss_pred CCCCccHHHHHHHHhhc-----CCCEEEEEEEeccChHHHHHHHHHHHhcCccceeEEEEecccccHHHHHHHHHHHHHH
Confidence 699999996 4455432 34554 777777765 46666666655422110 111111111111 123
Q ss_pred HHHh--ccCcEEEEEcCCCchh
Q 005367 69 FKTL--SKKKFALLLDDLWERV 88 (700)
Q Consensus 69 ~~~l--~~~r~LlVlDdv~~~~ 88 (700)
.+.+ +++.+|+|+||+....
T Consensus 246 AEyfrd~G~~VLlv~DdlTr~A 267 (502)
T PRK13343 246 AEYFRDQGQDALIVYDDLSKHA 267 (502)
T ss_pred HHHHHhCCCCEEEEecchHHHH
Confidence 3333 4789999999997663
No 462
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=81.29 E-value=1.9 Score=42.07 Aligned_cols=29 Identities=24% Similarity=0.232 Sum_probs=20.5
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEe
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVV 32 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~ 32 (700)
|+|.||||+++.+.+.. ......++-|+.
T Consensus 4 paGSGKTT~~~~~~~~~---~~~~~~~~~vNL 32 (238)
T PF03029_consen 4 PAGSGKTTFCKGLSEWL---ESNGRDVYIVNL 32 (238)
T ss_dssp STTSSHHHHHHHHHHHH---TTT-S-EEEEE-
T ss_pred CCCCCHHHHHHHHHHHH---HhccCCceEEEc
Confidence 79999999999999988 333344555553
No 463
>COG1158 Rho Transcription termination factor [Transcription]
Probab=81.28 E-value=7.4 Score=38.95 Aligned_cols=83 Identities=19% Similarity=0.264 Sum_probs=49.5
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEE--eCCccCHHHHHHHHHHHcCCCC-CCCCCccHHHHHH----HHHHHhc
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVV--VSKDLQLEKIQETIRKKIGLCN-DSWKNKSLEEKAQ----DIFKTLS 73 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~--~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~----~l~~~l~ 73 (700)
++-.|||+|.+.+++-. ..++-++..||- ...+..++++++.+-..+-.+. ++ +....-.++. +-++..+
T Consensus 181 PPkaGKT~lLq~IA~aI--t~N~Pe~~LiVLLIDERPEEVTdmqrsV~geViaSTFDe-pp~~HvqVAE~viEkAKRlVE 257 (422)
T COG1158 181 PPKAGKTTLLQNIANAI--TTNHPECELIVLLIDERPEEVTDMQRSVKGEVVASTFDE-PPSRHVQVAEMVIEKAKRLVE 257 (422)
T ss_pred CCCCCchHHHHHHHHHH--hcCCCceEEEEEEecCCchHHHHHHHhhcceEEeecCCC-cchhhHHHHHHHHHHHHHHHH
Confidence 46789999999999997 356778888874 4445567777776654332111 11 1222222222 2222233
Q ss_pred -cCcEEEEEcCCCc
Q 005367 74 -KKKFALLLDDLWE 86 (700)
Q Consensus 74 -~~r~LlVlDdv~~ 86 (700)
++.+.+.+|-+..
T Consensus 258 ~~kDVVILLDSITR 271 (422)
T COG1158 258 HGKDVVILLDSITR 271 (422)
T ss_pred cCCcEEEEehhHHH
Confidence 5678888888743
No 464
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=81.16 E-value=1.5 Score=36.25 Aligned_cols=17 Identities=41% Similarity=0.657 Sum_probs=15.4
Q ss_pred CCCcHHHHHHHHHhhcc
Q 005367 2 GGVGKTTLLTQINNKFV 18 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~ 18 (700)
||+||||+|..++....
T Consensus 9 gG~Gkst~~~~la~~~~ 25 (104)
T cd02042 9 GGVGKTTTAVNLAAALA 25 (104)
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 89999999999988873
No 465
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=81.15 E-value=11 Score=39.96 Aligned_cols=111 Identities=19% Similarity=0.220 Sum_probs=58.2
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCC------CCCCCccH----HHHHHHHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCN------DSWKNKSL----EEKAQDIFKT 71 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~----~~~~~~l~~~ 71 (700)
.|+|||+|+..++... . ....++.+.........+.+...+..-+... ........ ....-.+.+.
T Consensus 165 sG~GKTtLl~~Ia~~~---~-~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEy 240 (432)
T PRK06793 165 SGVGKSTLLGMIAKNA---K-ADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEY 240 (432)
T ss_pred CCCChHHHHHHHhccC---C-CCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 6999999999999876 1 2223444333333566666665555432111 11111111 1112223333
Q ss_pred h--ccCcEEEEEcCCCchhh-hhhh---cCcCC-CCcEEEEecCchhhhhcc
Q 005367 72 L--SKKKFALLLDDLWERVD-LKKI---GVPLP-KNSAVVFTTRFVDVCGRM 116 (700)
Q Consensus 72 l--~~~r~LlVlDdv~~~~~-~~~l---~~~~~-~gs~iiiTTr~~~~~~~~ 116 (700)
+ +++..|+|+|+.....+ ..++ ....| .|....+.|..+.+++++
T Consensus 241 fr~~G~~VLlilDslTr~a~A~reisl~~~e~p~~G~~~~~~s~l~~L~ERa 292 (432)
T PRK06793 241 FRDQGNNVLLMMDSVTRFADARRSVDIAVKELPIGGKTLLMESYMKKLLERS 292 (432)
T ss_pred HHHcCCcEEEEecchHHHHHHHHHHHHHhcCCCCCCeeeeeeccchhHHHHh
Confidence 3 47899999999976633 2222 12223 255566666656665554
No 466
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=80.94 E-value=1.2 Score=26.03 Aligned_cols=19 Identities=32% Similarity=0.496 Sum_probs=10.8
Q ss_pred cccceeccccCcccccchh
Q 005367 398 VSLQLLDISYTRVRELPEE 416 (700)
Q Consensus 398 ~~L~~L~l~~~~l~~lp~~ 416 (700)
++|++|++++|++..+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4555666666666555544
No 467
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=80.94 E-value=1.2 Score=26.03 Aligned_cols=19 Identities=32% Similarity=0.496 Sum_probs=10.8
Q ss_pred cccceeccccCcccccchh
Q 005367 398 VSLQLLDISYTRVRELPEE 416 (700)
Q Consensus 398 ~~L~~L~l~~~~l~~lp~~ 416 (700)
++|++|++++|++..+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4555666666666555544
No 468
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=80.94 E-value=3.7 Score=40.50 Aligned_cols=81 Identities=10% Similarity=0.060 Sum_probs=57.6
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEE-EeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWV-VVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~Ll 79 (700)
++|+|||+-++.++... ...|+ ..+..+....++..+....... ....+.+....+...+++..-++
T Consensus 102 ~~g~gKt~a~~~y~~s~--------p~~~l~~~~p~~~a~~~i~~i~~~~~~~----~~~~~~d~~~~~~~~l~~~~~~i 169 (297)
T COG2842 102 YAGLGKTQAAKNYAPSN--------PNALLIEADPSYTALVLILIICAAAFGA----TDGTINDLTERLMIRLRDTVRLI 169 (297)
T ss_pred cccchhHHHHHhhcccC--------ccceeecCChhhHHHHHHHHHHHHHhcc----cchhHHHHHHHHHHHHccCccee
Confidence 47999999999999987 45555 4555566666666666655443 45566677777777778888899
Q ss_pred EEcCCCch--hhhhhh
Q 005367 80 LLDDLWER--VDLKKI 93 (700)
Q Consensus 80 VlDdv~~~--~~~~~l 93 (700)
+.|+.+.. +.++.+
T Consensus 170 ivDEA~~L~~~ale~l 185 (297)
T COG2842 170 IVDEADRLPYRALEEL 185 (297)
T ss_pred eeehhhccChHHHHHH
Confidence 99998766 345555
No 469
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=80.93 E-value=3.1 Score=42.21 Aligned_cols=96 Identities=15% Similarity=0.248 Sum_probs=58.6
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCCC--------CCCCCc-----cHHHHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIRKKIGLCN--------DSWKNK-----SLEEKAQD 67 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~--------~~~~~~-----~~~~~~~~ 67 (700)
+|+|||-+.+++.++.+ +.+--..+|.-+++.- ...++..+|.+.--... .+++.. -..-...+
T Consensus 156 AGVGKTVl~~ELI~Nia--~~h~g~SVFaGvGERtREGndLy~Em~es~vl~ktalv~gQMNEpPGaR~RValtGlT~AE 233 (468)
T COG0055 156 AGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARMRVALTGLTMAE 233 (468)
T ss_pred CCccceeeHHHHHHHHH--HHcCCeEEEEeccccccchHHHHHHHHhcCCCCceeEEEeecCCCCcceeeehhhhhhHHH
Confidence 69999999999998873 3455667788777654 56777777776642211 111111 11122333
Q ss_pred HHHHhccCcEEEEEcCCCch----hhhhhhcCcCCC
Q 005367 68 IFKTLSKKKFALLLDDLWER----VDLKKIGVPLPK 99 (700)
Q Consensus 68 l~~~l~~~r~LlVlDdv~~~----~~~~~l~~~~~~ 99 (700)
..+--.++.+|+++||+..- .++..++...|.
T Consensus 234 yfRD~~gqdVLlFIDNIfRftQAGsEVSalLGr~PS 269 (468)
T COG0055 234 YFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPS 269 (468)
T ss_pred HhhcccCCeEEEEehhhhHHhhcchHHHHHhccCcc
Confidence 34444578899999999655 235555555444
No 470
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=80.92 E-value=4.1 Score=34.80 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
.+|+|||.+|+.+++..
T Consensus 61 ~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 61 WTGTGKNFVSRLIAEHL 77 (127)
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 37999999999999983
No 471
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=80.80 E-value=1.9 Score=42.97 Aligned_cols=33 Identities=21% Similarity=0.444 Sum_probs=24.1
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQL 38 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 38 (700)
||+||||+|..++...+ +.- .+.-|++....+.
T Consensus 11 GGvGKTT~a~nLA~~La---~~G-rVLliD~Dpq~~~ 43 (264)
T PRK13231 11 GGIGKSTTVSNMAAAYS---NDH-RVLVIGCDPKADT 43 (264)
T ss_pred CCCcHHHHHHHHhcccC---CCC-EEEEEeEccCccc
Confidence 89999999999999883 223 5767776555433
No 472
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=80.75 E-value=1.8 Score=44.03 Aligned_cols=41 Identities=27% Similarity=0.375 Sum_probs=28.1
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHH
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQET 44 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 44 (700)
.|||||||+|.+.+-..+... ..+.-|......+..+.+..
T Consensus 10 KGGVGKTT~aaA~A~~lA~~g---~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 10 KGGVGKTTIAAATAVKLAESG---KKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred CCcccHHHHHHHHHHHHHHcC---CcEEEEEeCCCCchHhhhcc
Confidence 499999999999888773222 44777766666565555444
No 473
>PRK14527 adenylate kinase; Provisional
Probab=80.75 E-value=1.8 Score=40.65 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|.||||+|+.++..+
T Consensus 14 ~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 14 PPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999999887
No 474
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=80.74 E-value=2.5 Score=41.95 Aligned_cols=93 Identities=15% Similarity=0.099 Sum_probs=51.3
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEEE
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALLL 81 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVl 81 (700)
.|.||||+++++.... ...-..++.|.......... ..++.... ... ......++..++...=.+++
T Consensus 89 tGSGKTT~l~all~~i---~~~~~~iitiEdp~E~~~~~-----~~q~~v~~--~~~---~~~~~~l~~~lR~~PD~i~v 155 (264)
T cd01129 89 TGSGKTTTLYSALSEL---NTPEKNIITVEDPVEYQIPG-----INQVQVNE--KAG---LTFARGLRAILRQDPDIIMV 155 (264)
T ss_pred CCCcHHHHHHHHHhhh---CCCCCeEEEECCCceecCCC-----ceEEEeCC--cCC---cCHHHHHHHHhccCCCEEEe
Confidence 6999999999988776 22222344442221111100 01121111 011 23555667777778889999
Q ss_pred cCCCchhhhhhhcCcCCCCcEEEEecC
Q 005367 82 DDLWERVDLKKIGVPLPKNSAVVFTTR 108 (700)
Q Consensus 82 Ddv~~~~~~~~l~~~~~~gs~iiiTTr 108 (700)
+++.+.+....+......|-. ++||=
T Consensus 156 gEiR~~e~a~~~~~aa~tGh~-v~tTl 181 (264)
T cd01129 156 GEIRDAETAEIAVQAALTGHL-VLSTL 181 (264)
T ss_pred ccCCCHHHHHHHHHHHHcCCc-EEEEe
Confidence 999999866554444444544 56664
No 475
>PRK06936 type III secretion system ATPase; Provisional
Probab=80.72 E-value=7.1 Score=41.47 Aligned_cols=81 Identities=22% Similarity=0.290 Sum_probs=46.8
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCC-----CCCCCCccHHHH-----HHHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIRKKIGLC-----NDSWKNKSLEEK-----AQDIFK 70 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~-----~~~l~~ 70 (700)
.|+|||||...++... .-+.++++-+++.. ...++.+..+..-+.. ....+..-.... .-.+.+
T Consensus 171 sG~GKStLl~~Ia~~~-----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~a~tiAE 245 (439)
T PRK06936 171 AGGGKSTLLASLIRSA-----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAE 245 (439)
T ss_pred CCCChHHHHHHHhcCC-----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 6999999999999886 23567777777765 4555555544321111 011111111111 111333
Q ss_pred Hh--ccCcEEEEEcCCCch
Q 005367 71 TL--SKKKFALLLDDLWER 87 (700)
Q Consensus 71 ~l--~~~r~LlVlDdv~~~ 87 (700)
.+ +++++|+++|++...
T Consensus 246 yfrd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 246 YFRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHHcCCCEEEeccchhHH
Confidence 33 579999999999655
No 476
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=80.59 E-value=57 Score=32.18 Aligned_cols=112 Identities=16% Similarity=0.278 Sum_probs=69.2
Q ss_pred EEEEcCCCch--h---hhhhhcCcCCCCcEEEEe----cCchhhhhcccCc-ceEeccCCChHhHHHHHHHHhcccccCC
Q 005367 78 ALLLDDLWER--V---DLKKIGVPLPKNSAVVFT----TRFVDVCGRMEAR-RTFKVECLSDEAAWELFREKVGEETIES 147 (700)
Q Consensus 78 LlVlDdv~~~--~---~~~~l~~~~~~gs~iiiT----Tr~~~~~~~~~~~-~~~~l~~L~~~~a~~l~~~~~~~~~~~~ 147 (700)
.+|+-.+++. + .+..-...+...+|+|+. ||-.+ .+.+. -.++++..+++|....+.+.+..++...
T Consensus 130 vvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~SriIe---pIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~l 206 (351)
T KOG2035|consen 130 VVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRIIE---PIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQL 206 (351)
T ss_pred EEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccchh---HHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccC
Confidence 5666666544 1 122222334457887763 33211 11211 3579999999999999999987777555
Q ss_pred CCChHHHHHHHHHHhCCC-chHHHHHHH-HhccC--------CChHHHHHHHHHHHhh
Q 005367 148 HHSIPELAQTVAKECGGL-PLALITIGR-AMAYK--------KTPEEWRYAIEVLRRS 195 (700)
Q Consensus 148 ~~~~~~~~~~i~~~~~g~-Plai~~~~~-~l~~~--------~~~~~~~~~l~~~~~~ 195 (700)
+ .+++.+|+++++|. -.||-+.-. .+.+. -+.-+|..++++....
T Consensus 207 p---~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 207 P---KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred c---HHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCCCCccHHHHHHHHHHH
Confidence 5 89999999999885 444443321 11111 1466899888877654
No 477
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=80.47 E-value=1.1 Score=40.13 Aligned_cols=17 Identities=24% Similarity=0.526 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+++....
T Consensus 7 ~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 7 VSGSGKSTVGKALAERL 23 (150)
T ss_pred CCCCCHHHHHHHHHhhc
Confidence 58999999999998885
No 478
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=80.38 E-value=8 Score=36.77 Aligned_cols=59 Identities=10% Similarity=0.055 Sum_probs=33.9
Q ss_pred HHHHhccCcEEEEEcCCCch------hhhhhhcCcC-CCCcEEEEecCchhhhhcccCcceEeccCCCh
Q 005367 68 IFKTLSKKKFALLLDDLWER------VDLKKIGVPL-PKNSAVVFTTRFVDVCGRMEARRTFKVECLSD 129 (700)
Q Consensus 68 l~~~l~~~r~LlVlDdv~~~------~~~~~l~~~~-~~gs~iiiTTr~~~~~~~~~~~~~~~l~~L~~ 129 (700)
+.+.+..+.-++++|+-... ..+..+...+ ..|..||++|.+.+.... ...+.++..+.
T Consensus 138 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~~~~ 203 (207)
T PRK13539 138 LARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGPFAA 203 (207)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecCccC
Confidence 44445556779999976433 2222222222 237788888887665443 56677766443
No 479
>PRK00131 aroK shikimate kinase; Reviewed
Probab=80.26 E-value=1.1 Score=41.20 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=16.0
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+++++..
T Consensus 12 ~~GsGKstla~~La~~l 28 (175)
T PRK00131 12 FMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 68999999999999997
No 480
>PRK14532 adenylate kinase; Provisional
Probab=80.25 E-value=1.1 Score=41.82 Aligned_cols=17 Identities=18% Similarity=0.122 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.++..+
T Consensus 8 ~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 8 PPAAGKGTQAKRLVEER 24 (188)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 58999999999999887
No 481
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=80.23 E-value=7.3 Score=34.28 Aligned_cols=16 Identities=38% Similarity=0.677 Sum_probs=14.9
Q ss_pred CCCcHHHHHHHHHhhc
Q 005367 2 GGVGKTTLLTQINNKF 17 (700)
Q Consensus 2 gGiGKT~La~~~~~~~ 17 (700)
||+|||++|..++..+
T Consensus 9 gg~gkt~~~~~~a~~~ 24 (139)
T cd02038 9 GGVGKTNISANLALAL 24 (139)
T ss_pred CCCcHHHHHHHHHHHH
Confidence 8999999999998887
No 482
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=80.23 E-value=3.5 Score=47.33 Aligned_cols=96 Identities=14% Similarity=0.070 Sum_probs=49.9
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHH-----HHHHh--c
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQD-----IFKTL--S 73 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----l~~~l--~ 73 (700)
.+|+||||+++.+........ . ...+++.+....-.. .|.+..+.+. ..+...... ..... .
T Consensus 346 gpGTGKTt~l~~i~~~~~~~~-~-~~~v~l~ApTg~AA~----~L~e~~g~~a-----~Tih~lL~~~~~~~~~~~~~~~ 414 (720)
T TIGR01448 346 GPGTGKTTITRAIIELAEELG-G-LLPVGLAAPTGRAAK----RLGEVTGLTA-----STIHRLLGYGPDTFRHNHLEDP 414 (720)
T ss_pred CCCCCHHHHHHHHHHHHHHcC-C-CceEEEEeCchHHHH----HHHHhcCCcc-----ccHHHHhhccCCccchhhhhcc
Confidence 389999999999988772211 1 134555544432222 2222222211 001100000 00000 1
Q ss_pred cCcEEEEEcCCCchh--hhhhhcCcCCCCcEEEEec
Q 005367 74 KKKFALLLDDLWERV--DLKKIGVPLPKNSAVVFTT 107 (700)
Q Consensus 74 ~~r~LlVlDdv~~~~--~~~~l~~~~~~gs~iiiTT 107 (700)
...-+||+|.+.-.. .+..+...++.|.++|+--
T Consensus 415 ~~~~llIvDEaSMvd~~~~~~Ll~~~~~~~rlilvG 450 (720)
T TIGR01448 415 IDCDLLIVDESSMMDTWLALSLLAALPDHARLLLVG 450 (720)
T ss_pred ccCCEEEEeccccCCHHHHHHHHHhCCCCCEEEEEC
Confidence 234699999997653 4566666777788887754
No 483
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=80.17 E-value=1.1 Score=41.68 Aligned_cols=17 Identities=35% Similarity=0.567 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
|=|+||||||++++++.
T Consensus 12 ~IG~GKSTLa~~La~~l 28 (216)
T COG1428 12 MIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccccCHHHHHHHHHHHh
Confidence 45999999999999998
No 484
>PRK06696 uridine kinase; Validated
Probab=80.13 E-value=7.6 Score=37.45 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
.+|+||||+|+++++..
T Consensus 30 ~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 30 ITASGKTTFADELAEEI 46 (223)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999999987
No 485
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=80.10 E-value=2.7 Score=48.49 Aligned_cols=114 Identities=21% Similarity=0.194 Sum_probs=57.2
Q ss_pred cCcEEEEEcCCCchh---h---h-hhhcCcC-CCCcEEEEecCchhhhhcccCcceEeccCCC-hHhHHHHHHHHhcccc
Q 005367 74 KKKFALLLDDLWERV---D---L-KKIGVPL-PKNSAVVFTTRFVDVCGRMEARRTFKVECLS-DEAAWELFREKVGEET 144 (700)
Q Consensus 74 ~~r~LlVlDdv~~~~---~---~-~~l~~~~-~~gs~iiiTTr~~~~~~~~~~~~~~~l~~L~-~~~a~~l~~~~~~~~~ 144 (700)
..+-|+++|..-.-. + + ..+...+ ..|+.+|+||-..++.........+.-..+. +++.... .-+. ..+
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~p-~Ykl-~~G 478 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLSP-TYKL-LKG 478 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCce-EEEE-CCC
Confidence 478999999985431 1 1 1121222 2388999999987774332111111111111 1111110 0001 001
Q ss_pred cCCCCChHHHHHHHHHHhCCCchHHHHHHHHhccCCChHHHHHHHHHHHhh
Q 005367 145 IESHHSIPELAQTVAKECGGLPLALITIGRAMAYKKTPEEWRYAIEVLRRS 195 (700)
Q Consensus 145 ~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~~~~~l~~~~~~ 195 (700)
.+ -...|-.|++++ |+|-.+.--|..+.. .....+..+++.+...
T Consensus 479 ---~~-g~S~a~~iA~~~-Glp~~ii~~A~~~~~-~~~~~~~~li~~L~~~ 523 (771)
T TIGR01069 479 ---IP-GESYAFEIAQRY-GIPHFIIEQAKTFYG-EFKEEINVLIEKLSAL 523 (771)
T ss_pred ---CC-CCcHHHHHHHHh-CcCHHHHHHHHHHHH-hhHHHHHHHHHHHHHH
Confidence 11 145788888888 577766666666644 3445666666666554
No 486
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=80.03 E-value=1.7 Score=43.47 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=23.0
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQL 38 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 38 (700)
||+||||+|..++...+ +.-..+.-|+.....+.
T Consensus 11 GGVGKTT~~~nLA~~la---~~G~kVLliD~Dpq~~~ 44 (270)
T PRK13185 11 GGIGKSTTSSNLSAAFA---KLGKKVLQIGCDPKHDS 44 (270)
T ss_pred CCCCHHHHHHHHHHHHH---HCCCeEEEEeccCCcch
Confidence 89999999999988873 22234555665544443
No 487
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=80.02 E-value=3.8 Score=38.10 Aligned_cols=31 Identities=26% Similarity=0.422 Sum_probs=18.1
Q ss_pred EEEEcCCCchh------hhhhhcCcCCCCcEEEEecC
Q 005367 78 ALLLDDLWERV------DLKKIGVPLPKNSAVVFTTR 108 (700)
Q Consensus 78 LlVlDdv~~~~------~~~~l~~~~~~gs~iiiTTr 108 (700)
++|+|++.... .+..+....+.+.++++.|-
T Consensus 132 ~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~sa 168 (201)
T smart00487 132 LVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSA 168 (201)
T ss_pred EEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEec
Confidence 89999986653 24444444444555555543
No 488
>PF13245 AAA_19: Part of AAA domain
Probab=79.98 E-value=2.3 Score=32.87 Aligned_cols=17 Identities=35% Similarity=0.358 Sum_probs=11.7
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
.+|.|||+++.+.....
T Consensus 18 ~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 18 PPGTGKTTTLAARIAEL 34 (76)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 48999996655554444
No 489
>PHA00729 NTP-binding motif containing protein
Probab=79.84 E-value=1.2 Score=42.59 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
.+|+|||+||.+++++.
T Consensus 25 ~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 25 KQGSGKTTYALKVARDV 41 (226)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 48999999999999985
No 490
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=79.81 E-value=8.8 Score=39.53 Aligned_cols=115 Identities=15% Similarity=0.163 Sum_probs=58.4
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhc--cCcEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLS--KKKFA 78 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~r~L 78 (700)
++|+|||..|+.++.+. ..|+.+-- ..++ .+-.......++.+..|-. ++..|
T Consensus 392 PPGTGKTm~ArelAr~S-----GlDYA~mT----GGDV----------------APlG~qaVTkiH~lFDWakkS~rGLl 446 (630)
T KOG0742|consen 392 PPGTGKTMFARELARHS-----GLDYAIMT----GGDV----------------APLGAQAVTKIHKLFDWAKKSRRGLL 446 (630)
T ss_pred CCCCCchHHHHHHHhhc-----CCceehhc----CCCc----------------cccchHHHHHHHHHHHHHhhcccceE
Confidence 68999999999999886 23332211 0000 0112222334455556553 46688
Q ss_pred EEEcCCCch--------------hhhhhhcCcCCCCcE---EEEecCchhhhhccc---CcceEeccCCChHhHHHHHHH
Q 005367 79 LLLDDLWER--------------VDLKKIGVPLPKNSA---VVFTTRFVDVCGRME---ARRTFKVECLSDEAAWELFRE 138 (700)
Q Consensus 79 lVlDdv~~~--------------~~~~~l~~~~~~gs~---iiiTTr~~~~~~~~~---~~~~~~l~~L~~~~a~~l~~~ 138 (700)
|++|..+-- ..+..++-.-+..|+ .++.|..+.-.++.. .+..++.+---+||-.+|+..
T Consensus 447 lFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~l 526 (630)
T KOG0742|consen 447 LFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNL 526 (630)
T ss_pred EEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHH
Confidence 888877411 123444333333333 334454443333332 234556555556666666665
Q ss_pred Hh
Q 005367 139 KV 140 (700)
Q Consensus 139 ~~ 140 (700)
+.
T Consensus 527 Yl 528 (630)
T KOG0742|consen 527 YL 528 (630)
T ss_pred HH
Confidence 55
No 491
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=79.80 E-value=3.2 Score=41.05 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|.|||-+|++|+...
T Consensus 174 ppGtGKTlla~~Vaa~m 190 (388)
T KOG0651|consen 174 PPGTGKTLLARAVAATM 190 (388)
T ss_pred CCCCchhHHHHHHHHhc
Confidence 47999999999999997
No 492
>PRK09099 type III secretion system ATPase; Provisional
Probab=79.79 E-value=5.1 Score=42.71 Aligned_cols=83 Identities=22% Similarity=0.233 Sum_probs=45.8
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCC-----CCCCCccHHH-----HHHHHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCN-----DSWKNKSLEE-----KAQDIFKT 71 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~-----~~~~l~~~ 71 (700)
.|+|||+|++.++... . .-..+++..-........+.+.+...-.... ...+...... ..-.+.+.
T Consensus 172 sG~GKTtLl~~ia~~~---~-~d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~~a~tiAEy 247 (441)
T PRK09099 172 AGVGKSTLMGMFARGT---Q-CDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAYVATAIAEY 247 (441)
T ss_pred CCCCHHHHHHHHhCCC---C-CCeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 6999999999998775 1 1234555544445556666666655422110 1111111111 11123333
Q ss_pred h--ccCcEEEEEcCCCchh
Q 005367 72 L--SKKKFALLLDDLWERV 88 (700)
Q Consensus 72 l--~~~r~LlVlDdv~~~~ 88 (700)
+ +++.+|+++||+....
T Consensus 248 frd~G~~VLl~~DslTr~A 266 (441)
T PRK09099 248 FRDRGLRVLLMMDSLTRFA 266 (441)
T ss_pred HHHcCCCEEEeccchhHHH
Confidence 3 4789999999996653
No 493
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=79.61 E-value=11 Score=38.38 Aligned_cols=81 Identities=25% Similarity=0.253 Sum_probs=43.8
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeC-CccCHHHHHHHHHHHcCCC-----CCCCCCccHH-----HHHHHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVS-KDLQLEKIQETIRKKIGLC-----NDSWKNKSLE-----EKAQDIFK 70 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~-----~~~~~l~~ 70 (700)
.|+|||+|.+.++... . -+.....-++ ...+..++.......-... ....+..... ...-.+.+
T Consensus 78 sG~GKTtLl~~Ia~~~---~--~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~~a~~~AE 152 (326)
T cd01136 78 SGVGKSTLLGMIARGT---T--ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAYTATAIAE 152 (326)
T ss_pred CCCChHHHHHHHhCCC---C--CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 6999999999998775 1 2333334333 3445666666665543211 0111111111 11112333
Q ss_pred Hh--ccCcEEEEEcCCCch
Q 005367 71 TL--SKKKFALLLDDLWER 87 (700)
Q Consensus 71 ~l--~~~r~LlVlDdv~~~ 87 (700)
.+ +++.+|+++||+...
T Consensus 153 yfr~~g~~Vll~~Dsltr~ 171 (326)
T cd01136 153 YFRDQGKDVLLLMDSLTRF 171 (326)
T ss_pred HHHHcCCCeEEEeccchHH
Confidence 33 478999999998555
No 494
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=79.53 E-value=5.3 Score=42.32 Aligned_cols=48 Identities=17% Similarity=0.021 Sum_probs=27.3
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHcCC
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIRKKIGL 51 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~ 51 (700)
++|+||||+|.+++... .+.-..+..|++.... .....++...++.+.
T Consensus 108 ~~GvGKTTtaaKLA~~l---~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~v 156 (429)
T TIGR01425 108 LQGSGKTTTCTKLAYYY---QRKGFKPCLVCADTFRAGAFDQLKQNATKARI 156 (429)
T ss_pred CCCCCHHHHHHHHHHHH---HHCCCCEEEEcCcccchhHHHHHHHHhhccCC
Confidence 47999999999999877 2222345555543222 233333444544443
No 495
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=79.44 E-value=9.8 Score=42.65 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=33.2
Q ss_pred cceEeccCCChHhHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCCch
Q 005367 119 RRTFKVECLSDEAAWELFREKVGEETIESHHSIPELAQTVAKECGGLPL 167 (700)
Q Consensus 119 ~~~~~l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 167 (700)
.+.++++.++++|-.++|+-+..... -+.+...+.+++++.|+-+
T Consensus 555 ~~ei~~~~lse~qRl~iLq~y~~~~~----~n~~v~~k~~a~~t~gfs~ 599 (953)
T KOG0736|consen 555 LHEIEVPALSEEQRLEILQWYLNHLP----LNQDVNLKQLARKTSGFSF 599 (953)
T ss_pred hhhccCCCCCHHHHHHHHHHHHhccc----cchHHHHHHHHHhcCCCCH
Confidence 36789999999999999988875433 3335566678888887653
No 496
>PRK05922 type III secretion system ATPase; Validated
Probab=79.37 E-value=6.3 Score=41.81 Aligned_cols=82 Identities=13% Similarity=0.206 Sum_probs=43.1
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCCC-----CCCCCccHH-----HHHHHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIRKKIGLCN-----DSWKNKSLE-----EKAQDIFK 70 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~-----~~~~~~~~~-----~~~~~l~~ 70 (700)
.|+|||||.+.++... ..+....+-+++.. .....+.+......... ...+..-.. ...-.+.+
T Consensus 166 nG~GKSTLL~~Ia~~~-----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~~a~tiAE 240 (434)
T PRK05922 166 PGSGKSSLLSTIAKGS-----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRAAMTIAE 240 (434)
T ss_pred CCCChHHHHHHHhccC-----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 6999999999998775 22333333334433 34455544444332211 110111111 11122334
Q ss_pred Hh--ccCcEEEEEcCCCchh
Q 005367 71 TL--SKKKFALLLDDLWERV 88 (700)
Q Consensus 71 ~l--~~~r~LlVlDdv~~~~ 88 (700)
.+ +++++|+++||+....
T Consensus 241 yfrd~G~~VLl~~DslTR~A 260 (434)
T PRK05922 241 YFRDQGHRVLFIMDSLSRWI 260 (434)
T ss_pred HHHHcCCCEEEeccchhHHH
Confidence 44 4799999999996653
No 497
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=79.30 E-value=1.2 Score=41.03 Aligned_cols=17 Identities=12% Similarity=0.317 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+++....
T Consensus 10 ~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 10 GSSAGKSSIARALQSVL 26 (175)
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 58999999999999886
No 498
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=79.22 E-value=1.7 Score=43.20 Aligned_cols=44 Identities=25% Similarity=0.307 Sum_probs=32.1
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcC
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIG 50 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~ 50 (700)
.+|+|||++|.+++... .++.+.++||...+. ...+.+.+.+ ++
T Consensus 31 ~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~--~~~l~~~~~~-~g 74 (260)
T COG0467 31 PPGTGKTIFALQFLYEG---AREGEPVLYVSTEES--PEELLENARS-FG 74 (260)
T ss_pred CCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCC--HHHHHHHHHH-cC
Confidence 37999999999999998 566899999986544 4444444433 54
No 499
>PRK14529 adenylate kinase; Provisional
Probab=79.08 E-value=3.7 Score=39.43 Aligned_cols=83 Identities=22% Similarity=0.205 Sum_probs=42.2
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEE--EeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhcc-CcE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWV--VVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSK-KKF 77 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~r~ 77 (700)
++|+||||+|+.++..+ . ..+.+..-.+ .+..........+.++.+-... ..+.....+.+++.+ ...
T Consensus 8 ~PGsGK~T~a~~La~~~-~-~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lv-------pdei~~~lv~~~l~~~~~~ 78 (223)
T PRK14529 8 PNGSGKGTQGALVKKKY-D-LAHIESGAIFREHIGGGTELGKKAKEYIDRGDLV-------PDDITIPMILETLKQDGKN 78 (223)
T ss_pred CCCCCHHHHHHHHHHHH-C-CCCcccchhhhhhccCCChHHHHHHHHHhccCcc-------hHHHHHHHHHHHHhccCCC
Confidence 58999999999999987 1 1222211111 1222222333444444433222 223334445555533 134
Q ss_pred EEEEcCCCch-hhhhh
Q 005367 78 ALLLDDLWER-VDLKK 92 (700)
Q Consensus 78 LlVlDdv~~~-~~~~~ 92 (700)
=+|||+.-.. +|.+.
T Consensus 79 g~iLDGfPRt~~Qa~~ 94 (223)
T PRK14529 79 GWLLDGFPRNKVQAEK 94 (223)
T ss_pred cEEEeCCCCCHHHHHH
Confidence 5899998543 34433
No 500
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=79.01 E-value=2 Score=39.65 Aligned_cols=31 Identities=26% Similarity=0.267 Sum_probs=22.6
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK 34 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~ 34 (700)
.||+||||+|..++... .+.-..+.-|+...
T Consensus 8 kgG~GKtt~a~~la~~l---~~~g~~vllvD~D~ 38 (179)
T cd02036 8 KGGVGKTTTTANLGTAL---AQLGYKVVLIDADL 38 (179)
T ss_pred CCCCCHHHHHHHHHHHH---HhCCCeEEEEeCCC
Confidence 38999999999999987 33334566666543
Done!