Query 005367
Match_columns 700
No_of_seqs 250 out of 3097
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 23:20:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005367.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005367hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.7E-38 5.8E-43 350.2 21.2 283 1-302 160-471 (549)
2 1vt4_I APAF-1 related killer D 100.0 9.3E-33 3.2E-37 307.1 14.3 257 1-295 158-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.7E-31 5.8E-36 326.4 23.6 280 1-301 155-451 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 4.7E-29 1.6E-33 279.3 20.8 274 1-298 155-448 (591)
5 4fmz_A Internalin; leucine ric 99.9 7.5E-25 2.6E-29 228.5 18.1 287 325-662 41-327 (347)
6 4fmz_A Internalin; leucine ric 99.9 6E-24 2E-28 221.6 20.9 299 307-656 46-344 (347)
7 2id5_A Lingo-1, leucine rich r 99.9 2.4E-23 8.3E-28 226.9 25.0 309 309-655 15-330 (477)
8 3vq2_A TLR4, TOLL-like recepto 99.9 1.4E-23 4.7E-28 236.2 22.7 146 309-458 15-165 (606)
9 4eco_A Uncharacterized protein 99.9 8.3E-25 2.8E-29 246.2 12.3 331 316-675 194-597 (636)
10 2z81_A CD282 antigen, TOLL-lik 99.9 5.2E-24 1.8E-28 236.7 18.2 147 310-459 10-161 (549)
11 4ecn_A Leucine-rich repeat pro 99.9 2E-24 6.9E-29 247.1 14.2 330 317-676 437-838 (876)
12 2z63_A TOLL-like receptor 4, v 99.9 1.5E-23 5E-28 234.3 20.6 338 309-664 32-512 (570)
13 3bz5_A Internalin-J, INLJ; leu 99.9 1.9E-23 6.5E-28 224.9 20.6 347 307-697 44-394 (457)
14 3v47_A TOLL-like receptor 5B a 99.9 2E-23 6.9E-28 226.3 20.5 329 308-664 13-389 (455)
15 1o6v_A Internalin A; bacterial 99.9 4.1E-23 1.4E-27 224.1 22.8 302 308-655 49-363 (466)
16 3vq2_A TLR4, TOLL-like recepto 99.9 2E-23 6.9E-28 234.8 20.0 124 308-432 35-164 (606)
17 4eco_A Uncharacterized protein 99.9 6.7E-24 2.3E-28 238.8 15.7 295 343-663 198-530 (636)
18 3t6q_A CD180 antigen; protein- 99.9 4.4E-23 1.5E-27 232.1 22.0 326 308-656 15-411 (606)
19 3rgz_A Protein brassinosteroid 99.9 8.2E-24 2.8E-28 243.7 15.5 307 324-662 219-531 (768)
20 3o6n_A APL1; leucine-rich repe 99.9 5.4E-23 1.8E-27 217.9 19.6 300 326-675 43-349 (390)
21 3t6q_A CD180 antigen; protein- 99.9 7.5E-23 2.5E-27 230.2 21.4 44 616-661 444-491 (606)
22 3o6n_A APL1; leucine-rich repe 99.9 4.9E-23 1.7E-27 218.3 18.4 298 307-656 47-350 (390)
23 4ecn_A Leucine-rich repeat pro 99.9 3E-23 1E-27 237.5 17.1 291 343-662 440-769 (876)
24 3rgz_A Protein brassinosteroid 99.9 1.8E-23 6.2E-28 240.8 14.5 298 308-632 226-549 (768)
25 1o6v_A Internalin A; bacterial 99.9 1.6E-22 5.4E-27 219.5 21.0 304 307-664 70-393 (466)
26 3bz5_A Internalin-J, INLJ; leu 99.9 5.5E-23 1.9E-27 221.3 17.0 315 322-691 36-353 (457)
27 1ziw_A TOLL-like receptor 3; i 99.9 1.1E-22 3.9E-27 231.9 20.4 266 308-594 7-306 (680)
28 2z7x_B TOLL-like receptor 1, v 99.9 1.7E-22 5.8E-27 222.9 20.6 142 308-458 3-150 (520)
29 3oja_B Anopheles plasmodium-re 99.9 1.4E-22 4.9E-27 226.7 18.5 298 327-674 50-354 (597)
30 3oja_B Anopheles plasmodium-re 99.9 1.2E-22 3.9E-27 227.4 17.2 298 307-656 53-356 (597)
31 3j0a_A TOLL-like receptor 5; m 99.9 1.7E-21 5.8E-26 226.8 25.2 173 308-489 7-187 (844)
32 2ft3_A Biglycan; proteoglycan, 99.9 3.4E-22 1.1E-26 206.8 16.4 296 328-656 33-331 (332)
33 2z63_A TOLL-like receptor 4, v 99.9 4.7E-22 1.6E-26 222.0 18.0 327 307-658 54-531 (570)
34 2id5_A Lingo-1, leucine rich r 99.9 1.7E-21 5.8E-26 212.3 21.0 291 307-632 34-331 (477)
35 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.2E-20 4E-25 210.0 27.3 142 308-458 34-181 (562)
36 2z81_A CD282 antigen, TOLL-lik 99.9 1E-21 3.6E-26 218.2 18.1 150 307-458 28-184 (549)
37 3v47_A TOLL-like receptor 5B a 99.9 2.4E-21 8.1E-26 209.9 19.9 308 331-661 13-362 (455)
38 1xku_A Decorin; proteoglycan, 99.9 3.3E-21 1.1E-25 199.2 19.7 295 328-655 31-329 (330)
39 3j0a_A TOLL-like receptor 5; m 99.9 5E-21 1.7E-25 222.8 22.7 320 307-664 26-399 (844)
40 1ziw_A TOLL-like receptor 3; i 99.9 3E-21 1E-25 220.2 18.7 149 308-458 28-183 (680)
41 2z7x_B TOLL-like receptor 1, v 99.9 6.7E-21 2.3E-25 210.1 20.4 144 331-488 3-150 (520)
42 4g8a_A TOLL-like receptor 4; l 99.9 6.5E-21 2.2E-25 215.7 19.7 144 311-458 37-185 (635)
43 1ogq_A PGIP-2, polygalacturona 99.8 2.7E-21 9.3E-26 197.8 12.1 129 329-458 51-186 (313)
44 4fcg_A Uncharacterized protein 99.8 5.8E-21 2E-25 196.6 14.2 90 349-440 80-169 (328)
45 2z80_A TOLL-like receptor 2, v 99.8 1.3E-20 4.5E-25 196.6 16.1 175 309-492 35-214 (353)
46 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 4.8E-20 1.7E-24 205.0 20.3 322 307-664 54-491 (562)
47 1ogq_A PGIP-2, polygalacturona 99.8 1.2E-20 4E-25 193.1 12.9 256 350-664 50-310 (313)
48 4g8a_A TOLL-like receptor 4; l 99.8 1.2E-19 4.1E-24 205.3 20.7 127 306-433 53-185 (635)
49 4fcg_A Uncharacterized protein 99.8 1.1E-19 3.6E-24 187.1 15.4 226 372-652 79-308 (328)
50 3zyj_A Leucine-rich repeat-con 99.8 1.6E-19 5.5E-24 194.2 17.3 238 309-595 47-290 (440)
51 3zyi_A Leucine-rich repeat-con 99.8 1.6E-19 5.4E-24 195.0 17.0 238 309-595 58-301 (452)
52 2z80_A TOLL-like receptor 2, v 99.8 3.9E-19 1.3E-23 185.5 18.0 273 328-656 31-312 (353)
53 1xku_A Decorin; proteoglycan, 99.8 1.1E-18 3.7E-23 180.3 21.1 284 308-631 34-329 (330)
54 2ft3_A Biglycan; proteoglycan, 99.8 5.1E-19 1.7E-23 182.9 18.6 283 308-632 36-331 (332)
55 1jl5_A Outer protein YOPM; leu 99.8 1.2E-18 4.1E-23 187.3 20.7 277 310-662 96-373 (454)
56 3g06_A SSPH2 (leucine-rich rep 99.8 2.6E-18 8.8E-23 190.4 22.7 254 307-632 42-295 (622)
57 2z66_A Variable lymphocyte rec 99.8 4.3E-19 1.5E-23 181.2 13.5 169 310-487 12-186 (306)
58 1jl5_A Outer protein YOPM; leu 99.8 3.2E-18 1.1E-22 184.0 19.4 285 307-662 113-412 (454)
59 2z66_A Variable lymphocyte rec 99.8 3.3E-18 1.1E-22 174.6 17.6 148 331-487 10-161 (306)
60 1ozn_A Reticulon 4 receptor; N 99.8 8.4E-19 2.9E-23 177.1 13.0 146 310-458 16-165 (285)
61 3zyi_A Leucine-rich repeat-con 99.8 2.2E-18 7.4E-23 186.1 16.8 243 330-632 56-301 (452)
62 3zyj_A Leucine-rich repeat-con 99.8 2.6E-18 8.7E-23 184.9 16.4 242 330-632 45-290 (440)
63 1ozn_A Reticulon 4 receptor; N 99.8 1.4E-18 4.7E-23 175.5 11.0 219 331-596 14-237 (285)
64 3o53_A Protein LRIM1, AGAP0063 99.8 1.8E-19 6.1E-24 184.8 4.1 125 348-488 32-156 (317)
65 3g06_A SSPH2 (leucine-rich rep 99.7 2.8E-17 9.7E-22 182.0 19.5 256 328-656 40-295 (622)
66 3o53_A Protein LRIM1, AGAP0063 99.7 6.5E-18 2.2E-22 173.2 10.5 271 351-667 11-284 (317)
67 3oja_A Leucine-rich immune mol 99.7 1.7E-18 5.8E-23 188.0 6.5 210 329-595 35-248 (487)
68 1z7x_W Ribonuclease inhibitor; 99.7 5.2E-19 1.8E-23 191.8 0.6 334 308-660 31-412 (461)
69 1wwl_A Monocyte differentiatio 99.7 1.4E-18 4.9E-23 177.6 2.7 159 326-492 41-217 (312)
70 3ogk_B Coronatine-insensitive 99.7 4.7E-18 1.6E-22 190.5 6.6 310 326-661 190-528 (592)
71 3oja_A Leucine-rich immune mol 99.7 1.4E-16 4.6E-21 173.0 15.5 238 347-653 31-270 (487)
72 1h6u_A Internalin H; cell adhe 99.7 5.5E-17 1.9E-21 165.3 10.5 148 324-487 37-184 (308)
73 2z62_A TOLL-like receptor 4, v 99.7 9.2E-17 3.2E-21 161.2 11.7 219 310-572 12-235 (276)
74 2o6q_A Variable lymphocyte rec 99.7 3.4E-16 1.2E-20 156.3 14.8 194 308-538 19-216 (270)
75 1h6u_A Internalin H; cell adhe 99.7 1.4E-16 4.8E-21 162.3 12.1 166 307-489 43-208 (308)
76 3ogk_B Coronatine-insensitive 99.7 1.9E-17 6.6E-22 185.5 5.7 319 326-676 162-524 (592)
77 2xwt_C Thyrotropin receptor; s 99.7 4.3E-16 1.5E-20 152.6 14.2 103 351-456 32-140 (239)
78 2ast_B S-phase kinase-associat 99.7 4.6E-17 1.6E-21 168.5 7.6 230 374-662 70-309 (336)
79 1p9a_G Platelet glycoprotein I 99.7 2.5E-16 8.4E-21 158.8 12.4 201 324-572 6-206 (290)
80 1z7x_W Ribonuclease inhibitor; 99.7 1.8E-18 6.1E-23 187.6 -4.0 314 324-659 24-383 (461)
81 2z62_A TOLL-like receptor 4, v 99.7 5.2E-16 1.8E-20 155.7 14.3 215 333-594 12-234 (276)
82 2o6q_A Variable lymphocyte rec 99.7 7.6E-16 2.6E-20 153.9 14.4 198 329-572 17-216 (270)
83 3rfs_A Internalin B, repeat mo 99.7 1.8E-16 6E-21 158.6 9.7 157 322-488 35-193 (272)
84 2ast_B S-phase kinase-associat 99.7 2.1E-17 7.3E-22 171.1 3.0 131 350-487 70-206 (336)
85 2p1m_B Transport inhibitor res 99.6 2.6E-17 8.7E-22 184.6 1.8 82 325-406 153-243 (594)
86 2xwt_C Thyrotropin receptor; s 99.6 1.2E-15 4.1E-20 149.4 12.9 103 531-658 134-239 (239)
87 3rfs_A Internalin B, repeat mo 99.6 1.4E-15 4.8E-20 152.0 13.5 189 307-513 43-233 (272)
88 4ay9_X Follicle-stimulating ho 99.6 1.4E-15 4.8E-20 158.0 13.6 236 309-593 13-255 (350)
89 1wwl_A Monocyte differentiatio 99.6 7.5E-17 2.6E-21 164.8 2.8 244 349-655 42-306 (312)
90 1p9a_G Platelet glycoprotein I 99.6 2.3E-15 8E-20 151.6 12.1 172 308-491 13-187 (290)
91 3m19_A Variable lymphocyte rec 99.6 5.1E-15 1.8E-19 146.0 14.2 173 308-490 17-193 (251)
92 2p1m_B Transport inhibitor res 99.6 8E-17 2.7E-21 180.6 -0.1 307 324-657 180-518 (594)
93 1h6t_A Internalin B; cell adhe 99.6 4.2E-15 1.4E-19 149.9 11.6 152 323-490 41-192 (291)
94 4ezg_A Putative uncharacterize 99.6 4.9E-15 1.7E-19 140.2 11.3 154 325-490 41-195 (197)
95 4ay9_X Follicle-stimulating ho 99.6 1.6E-14 5.6E-19 149.9 15.7 237 353-653 12-254 (350)
96 2ca6_A RAN GTPase-activating p 99.6 4E-16 1.4E-20 164.7 1.9 141 347-489 29-200 (386)
97 3m19_A Variable lymphocyte rec 99.6 1.8E-14 6.2E-19 142.1 12.8 175 328-538 14-190 (251)
98 4glp_A Monocyte differentiatio 99.5 1.4E-15 4.7E-20 155.3 4.3 32 561-593 272-303 (310)
99 1m9s_A Internalin B; cell inva 99.5 2E-14 7E-19 159.0 12.6 103 324-431 39-141 (605)
100 1m9s_A Internalin B; cell inva 99.5 1.6E-14 5.5E-19 159.8 11.0 166 308-490 46-211 (605)
101 3e6j_A Variable lymphocyte rec 99.5 1.1E-13 3.6E-18 134.3 14.5 147 310-460 24-173 (229)
102 1h6t_A Internalin B; cell adhe 99.5 1.2E-13 4.1E-18 139.2 15.2 167 307-490 48-214 (291)
103 4ezg_A Putative uncharacterize 99.5 7E-14 2.4E-18 132.3 12.6 148 307-459 46-194 (197)
104 2o6s_A Variable lymphocyte rec 99.5 3.6E-14 1.2E-18 135.6 10.6 145 310-458 12-160 (208)
105 1xeu_A Internalin C; cellular 99.5 7.1E-14 2.4E-18 138.6 12.5 160 314-491 28-187 (263)
106 3goz_A Leucine-rich repeat-con 99.5 1.2E-14 4E-19 151.9 7.0 260 334-632 4-295 (362)
107 2ca6_A RAN GTPase-activating p 99.5 1.8E-15 6.2E-20 159.7 0.7 172 317-490 21-230 (386)
108 4glp_A Monocyte differentiatio 99.5 3.1E-14 1.1E-18 145.2 7.5 173 307-489 93-285 (310)
109 2v9t_B SLIT homolog 2 protein 99.5 2.7E-13 9.4E-18 130.5 13.2 147 309-459 15-165 (220)
110 2v70_A SLIT-2, SLIT homolog 2 99.5 3E-13 1E-17 130.1 12.1 145 310-458 16-165 (220)
111 3goz_A Leucine-rich repeat-con 99.4 2.6E-14 9E-19 149.2 4.2 176 312-490 5-210 (362)
112 1xeu_A Internalin C; cellular 99.4 4.2E-14 1.4E-18 140.2 5.2 168 326-539 17-184 (263)
113 2xot_A Amphoterin-induced prot 99.4 3.4E-13 1.1E-17 140.6 12.3 172 308-489 21-202 (361)
114 2v9t_B SLIT homolog 2 protein 99.4 5.3E-13 1.8E-17 128.4 10.9 151 331-489 14-165 (220)
115 2o6s_A Variable lymphocyte rec 99.4 9.4E-13 3.2E-17 125.7 11.7 165 331-513 10-176 (208)
116 2v70_A SLIT-2, SLIT homolog 2 99.4 1.1E-12 3.6E-17 126.3 11.1 150 331-489 14-166 (220)
117 2ell_A Acidic leucine-rich nuc 99.4 1.4E-12 4.7E-17 119.9 10.7 128 328-458 24-159 (168)
118 3e6j_A Variable lymphocyte rec 99.4 1.7E-12 5.9E-17 125.7 10.8 150 330-489 21-172 (229)
119 3cvr_A Invasion plasmid antige 99.4 1.9E-12 6.5E-17 141.6 11.5 134 307-460 61-194 (571)
120 1a9n_A U2A', U2A'; complex (nu 99.3 1.5E-12 5.1E-17 120.6 8.7 140 344-490 13-154 (176)
121 2je0_A Acidic leucine-rich nuc 99.3 1.9E-12 6.6E-17 116.2 9.1 124 328-454 17-148 (149)
122 2ell_A Acidic leucine-rich nuc 99.3 7.1E-12 2.4E-16 115.0 12.4 133 305-439 24-164 (168)
123 1a9n_A U2A', U2A'; complex (nu 99.3 2.1E-12 7.2E-17 119.6 7.2 132 323-458 14-152 (176)
124 1w5s_A Origin recognition comp 99.3 2.7E-11 9.4E-16 128.8 16.4 264 1-280 60-371 (412)
125 2xot_A Amphoterin-induced prot 99.3 5.9E-12 2E-16 131.2 10.4 154 307-461 41-204 (361)
126 2qen_A Walker-type ATPase; unk 99.3 6.9E-11 2.4E-15 122.6 18.1 263 1-296 39-349 (350)
127 3cvr_A Invasion plasmid antige 99.3 1.3E-11 4.3E-16 135.1 11.7 156 307-490 82-244 (571)
128 2je0_A Acidic leucine-rich nuc 99.3 2E-11 6.9E-16 109.5 10.6 124 305-429 17-148 (149)
129 1w8a_A SLIT protein; signaling 99.2 2.7E-11 9.3E-16 113.7 11.1 128 331-460 11-140 (192)
130 1w8a_A SLIT protein; signaling 99.2 4.4E-11 1.5E-15 112.3 11.1 125 308-435 11-140 (192)
131 2wfh_A SLIT homolog 2 protein 99.2 4.8E-11 1.7E-15 112.0 11.2 126 331-460 13-140 (193)
132 2o6r_A Variable lymphocyte rec 99.2 7.9E-11 2.7E-15 109.0 12.3 128 330-460 9-138 (177)
133 2fna_A Conserved hypothetical 99.2 2.7E-10 9.3E-15 118.4 16.4 264 1-295 38-356 (357)
134 2wfh_A SLIT homolog 2 protein 99.2 1.2E-10 4.2E-15 109.2 12.2 119 310-431 15-136 (193)
135 4b8c_D Glucose-repressible alc 99.2 1.1E-11 3.6E-16 140.8 5.2 109 346-458 220-328 (727)
136 2o6r_A Variable lymphocyte rec 99.1 2.3E-10 8E-15 105.8 12.2 125 309-436 11-139 (177)
137 1dce_A Protein (RAB geranylger 99.1 2.4E-11 8.3E-16 133.6 5.4 150 320-482 401-566 (567)
138 4b8c_D Glucose-repressible alc 99.1 1.8E-11 6.3E-16 138.9 4.0 121 317-439 213-334 (727)
139 1ds9_A Outer arm dynein; leuci 99.1 3.4E-12 1.1E-16 120.7 -3.5 133 345-482 43-180 (198)
140 1dce_A Protein (RAB geranylger 99.1 2E-10 6.8E-15 126.3 9.9 121 329-453 442-567 (567)
141 1ds9_A Outer arm dynein; leuci 99.0 4.4E-12 1.5E-16 119.9 -5.1 134 316-452 36-180 (198)
142 3sb4_A Hypothetical leucine ri 99.0 8.9E-10 3E-14 113.1 11.2 257 327-651 48-327 (329)
143 2r9u_A Variable lymphocyte rec 99.0 2E-09 6.9E-14 98.9 10.0 99 331-431 15-115 (174)
144 2r9u_A Variable lymphocyte rec 98.9 2.6E-09 8.9E-14 98.2 10.3 108 308-418 15-125 (174)
145 2qby_B CDC6 homolog 3, cell di 98.9 2.9E-08 9.9E-13 104.2 18.9 259 1-280 53-339 (384)
146 2v1u_A Cell division control p 98.9 2.5E-08 8.5E-13 104.8 18.4 262 1-280 52-351 (387)
147 3g39_A Variable lymphocyte rec 98.9 3.9E-09 1.3E-13 96.7 10.4 99 331-431 12-112 (170)
148 4fdw_A Leucine rich hypothetic 98.9 4.2E-08 1.5E-12 102.8 19.6 120 328-455 113-235 (401)
149 3g39_A Variable lymphocyte rec 98.9 4.3E-09 1.5E-13 96.4 10.0 105 351-460 10-116 (170)
150 4fdw_A Leucine rich hypothetic 98.9 3.7E-08 1.3E-12 103.3 18.1 149 323-487 131-282 (401)
151 1fnn_A CDC6P, cell division co 98.9 1.2E-07 4.2E-12 99.5 20.4 257 1-280 52-351 (389)
152 3sb4_A Hypothetical leucine ri 98.8 6.4E-09 2.2E-13 106.6 8.3 56 327-383 100-157 (329)
153 2qby_A CDC6 homolog 1, cell di 98.7 8.3E-08 2.8E-12 100.7 11.6 259 1-279 53-347 (386)
154 2ifg_A High affinity nerve gro 98.6 5.9E-08 2E-12 100.2 9.6 97 334-431 14-113 (347)
155 4fs7_A Uncharacterized protein 98.6 3E-07 1E-11 96.7 13.7 280 323-653 66-374 (394)
156 3un9_A NLR family member X1; l 98.6 3.1E-09 1.1E-13 110.4 -1.7 160 328-491 72-254 (372)
157 1njg_A DNA polymerase III subu 98.6 5.3E-07 1.8E-11 87.8 14.1 100 74-176 125-231 (250)
158 4fs7_A Uncharacterized protein 98.6 5.4E-07 1.9E-11 94.7 14.6 267 339-653 58-351 (394)
159 3un9_A NLR family member X1; l 98.5 1.3E-08 4.5E-13 105.6 0.9 140 349-491 71-226 (372)
160 2ifg_A High affinity nerve gro 98.5 1.5E-07 5.1E-12 97.2 8.7 101 310-412 13-117 (347)
161 4gt6_A Cell surface protein; l 98.5 2.5E-06 8.7E-11 89.5 17.9 118 521-667 259-389 (394)
162 2chg_A Replication factor C sm 98.5 1.8E-06 6.1E-11 82.6 14.3 154 1-175 46-206 (226)
163 3e4g_A ATP synthase subunit S, 98.5 8E-08 2.7E-12 86.6 4.2 87 561-660 61-154 (176)
164 3e4g_A ATP synthase subunit S, 98.4 8.3E-08 2.8E-12 86.5 2.7 66 559-636 83-154 (176)
165 1hqc_A RUVB; extended AAA-ATPa 98.1 2.4E-05 8.1E-10 79.6 14.2 143 1-176 46-214 (324)
166 1sxj_B Activator 1 37 kDa subu 98.1 9.4E-06 3.2E-10 82.6 11.0 152 1-173 50-210 (323)
167 2ra8_A Uncharacterized protein 98.1 4.2E-06 1.4E-10 86.0 8.1 114 368-490 166-293 (362)
168 4gt6_A Cell surface protein; l 98.0 8.3E-05 2.8E-09 77.9 16.1 103 521-653 282-386 (394)
169 4h09_A Hypothetical leucine ri 98.0 0.00017 6E-09 75.0 17.2 124 324-455 42-167 (379)
170 2ra8_A Uncharacterized protein 97.9 1.1E-05 3.7E-10 82.9 6.8 137 348-489 170-320 (362)
171 1iqp_A RFCS; clamp loader, ext 97.9 3.8E-05 1.3E-09 78.1 9.5 100 74-176 109-215 (327)
172 3bos_A Putative DNA replicatio 97.8 1.2E-05 4.1E-10 77.8 5.3 140 1-173 60-217 (242)
173 1io0_A Tropomodulin; LRR prote 97.8 7.7E-06 2.6E-10 75.6 3.6 95 394-491 61-166 (185)
174 3te6_A Regulatory protein SIR3 97.8 0.00017 5.7E-09 72.0 12.8 139 1-142 53-213 (318)
175 2z4s_A Chromosomal replication 97.8 0.00011 3.7E-09 77.8 12.1 151 1-172 138-305 (440)
176 1jr3_A DNA polymerase III subu 97.7 0.0003 1E-08 72.9 13.4 98 74-174 118-222 (373)
177 3rw6_A Nuclear RNA export fact 97.7 6.7E-06 2.3E-10 80.0 0.6 80 371-452 167-257 (267)
178 1io0_A Tropomodulin; LRR prote 97.7 1.8E-05 6E-10 73.2 3.3 112 346-459 32-164 (185)
179 2chq_A Replication factor C sm 97.7 0.00026 8.8E-09 71.6 11.9 97 74-173 101-204 (319)
180 1d2n_A N-ethylmaleimide-sensit 97.6 0.00074 2.5E-08 66.5 14.7 162 1-194 72-263 (272)
181 1sxj_A Activator 1 95 kDa subu 97.6 0.00025 8.6E-09 76.8 11.8 176 1-190 85-272 (516)
182 1l8q_A Chromosomal replication 97.6 0.00033 1.1E-08 71.0 11.3 142 1-168 45-203 (324)
183 3pfi_A Holliday junction ATP-d 97.5 0.0022 7.4E-08 65.4 16.6 70 101-173 155-227 (338)
184 3pvs_A Replication-associated 97.5 0.00069 2.3E-08 71.5 12.4 145 1-172 58-214 (447)
185 1a5t_A Delta prime, HOLB; zinc 97.4 0.0017 5.9E-08 65.9 14.2 91 74-172 107-204 (334)
186 3rw6_A Nuclear RNA export fact 97.4 0.00016 5.4E-09 70.3 6.0 78 348-427 168-257 (267)
187 3uk6_A RUVB-like 2; hexameric 97.4 0.00057 1.9E-08 70.7 10.7 49 120-171 252-301 (368)
188 2qz4_A Paraplegin; AAA+, SPG7, 97.4 0.0035 1.2E-07 61.1 15.7 147 1-172 47-221 (262)
189 1xwi_A SKD1 protein; VPS4B, AA 97.4 0.0043 1.5E-07 62.5 16.6 147 1-173 53-223 (322)
190 3h4m_A Proteasome-activating n 97.3 0.0012 4.3E-08 65.3 11.4 166 1-194 59-260 (285)
191 4b4t_J 26S protease regulatory 97.3 0.004 1.4E-07 63.7 15.0 138 1-166 190-354 (405)
192 1sxj_D Activator 1 41 kDa subu 97.2 0.0014 4.8E-08 67.2 11.4 96 74-172 132-234 (353)
193 3eie_A Vacuolar protein sortin 97.2 0.0031 1.1E-07 63.6 13.4 146 1-173 59-228 (322)
194 2qp9_X Vacuolar protein sortin 97.2 0.0037 1.3E-07 64.0 13.5 146 1-173 92-261 (355)
195 1sxj_E Activator 1 40 kDa subu 97.1 0.0034 1.2E-07 64.3 12.3 98 73-173 132-237 (354)
196 2zan_A Vacuolar protein sortin 97.0 0.0073 2.5E-07 63.8 14.7 148 1-173 175-345 (444)
197 3d8b_A Fidgetin-like protein 1 97.0 0.005 1.7E-07 63.1 13.0 147 1-174 125-296 (357)
198 3b9p_A CG5977-PA, isoform A; A 97.0 0.012 4.1E-07 58.5 15.4 146 1-173 62-233 (297)
199 3vfd_A Spastin; ATPase, microt 97.0 0.013 4.3E-07 60.9 15.6 146 1-173 156-326 (389)
200 3syl_A Protein CBBX; photosynt 97.0 0.0039 1.3E-07 62.5 11.3 67 75-143 130-220 (309)
201 3u61_B DNA polymerase accessor 96.9 0.0045 1.5E-07 62.5 11.7 146 1-173 56-217 (324)
202 1jbk_A CLPB protein; beta barr 96.8 0.00069 2.4E-08 62.5 4.2 120 1-136 51-194 (195)
203 4b4t_L 26S protease subunit RP 96.8 0.0062 2.1E-07 63.3 11.7 138 1-166 223-387 (437)
204 4b4t_H 26S protease regulatory 96.8 0.0085 2.9E-07 62.2 12.1 137 1-166 251-415 (467)
205 4b4t_M 26S protease regulatory 96.8 0.0053 1.8E-07 63.8 10.5 138 1-166 223-387 (434)
206 4b4t_I 26S protease regulatory 96.8 0.0058 2E-07 62.8 10.6 138 1-166 224-388 (437)
207 1sxj_C Activator 1 40 kDa subu 96.8 0.01 3.5E-07 60.3 12.5 91 75-168 110-207 (340)
208 3cf0_A Transitional endoplasmi 96.7 0.013 4.4E-07 58.4 12.6 141 1-168 57-223 (301)
209 4b4t_K 26S protease regulatory 96.7 0.0045 1.6E-07 64.2 9.2 138 1-166 214-379 (428)
210 2gno_A DNA polymerase III, gam 96.6 0.0072 2.5E-07 60.1 9.7 119 1-140 26-152 (305)
211 2w58_A DNAI, primosome compone 96.5 0.002 6.9E-08 60.0 4.8 88 1-109 62-158 (202)
212 4h09_A Hypothetical leucine ri 96.3 0.013 4.4E-07 60.6 10.1 103 346-453 236-340 (379)
213 1lv7_A FTSH; alpha/beta domain 96.2 0.043 1.5E-06 53.1 12.6 143 1-170 53-222 (257)
214 2r62_A Cell division protease 96.2 0.0076 2.6E-07 58.9 7.1 89 74-166 102-218 (268)
215 3cf2_A TER ATPase, transitiona 96.1 0.022 7.6E-07 63.9 11.1 139 1-166 246-407 (806)
216 2kjq_A DNAA-related protein; s 96.0 0.0027 9.3E-08 55.8 2.6 30 1-33 44-73 (149)
217 3ec2_A DNA replication protein 95.9 0.0037 1.3E-07 57.0 3.2 89 1-109 46-142 (180)
218 2ce7_A Cell division protein F 95.9 0.055 1.9E-06 57.1 12.5 139 1-166 57-221 (476)
219 3hu3_A Transitional endoplasmi 95.9 0.037 1.3E-06 58.9 11.3 144 1-171 246-413 (489)
220 1in4_A RUVB, holliday junction 95.7 0.11 3.9E-06 52.3 13.7 50 120-172 173-222 (334)
221 1g5t_A COB(I)alamin adenosyltr 95.5 0.0068 2.3E-07 55.2 3.1 105 2-110 37-163 (196)
222 1pgv_A TMD-1, tropomodulin TMD 95.5 0.011 3.6E-07 54.2 4.2 118 371-489 38-170 (197)
223 3t15_A Ribulose bisphosphate c 95.3 0.17 5.8E-06 49.9 12.7 17 1-17 44-60 (293)
224 1ofh_A ATP-dependent HSL prote 95.2 0.045 1.5E-06 54.6 8.6 19 120-138 195-213 (310)
225 3n70_A Transport activator; si 95.1 0.022 7.5E-07 49.6 5.1 17 1-17 32-48 (145)
226 1r6b_X CLPA protein; AAA+, N-t 94.9 0.68 2.3E-05 52.5 18.2 124 1-140 215-362 (758)
227 4fcw_A Chaperone protein CLPB; 94.9 0.037 1.3E-06 55.3 6.8 31 1-34 55-85 (311)
228 2b8t_A Thymidine kinase; deoxy 94.8 0.0067 2.3E-07 57.0 0.8 103 2-110 21-126 (223)
229 3pxg_A Negative regulator of g 94.8 0.072 2.5E-06 56.5 9.0 120 1-142 209-340 (468)
230 2x8a_A Nuclear valosin-contain 94.8 0.32 1.1E-05 47.4 12.9 117 1-141 52-192 (274)
231 2c9o_A RUVB-like 1; hexameric 94.8 0.19 6.6E-06 53.1 12.2 89 77-171 297-408 (456)
232 1qvr_A CLPB protein; coiled co 94.7 0.058 2E-06 62.1 8.5 146 1-162 199-368 (854)
233 1ixz_A ATP-dependent metallopr 94.7 0.49 1.7E-05 45.4 14.0 138 1-166 57-221 (254)
234 2vhj_A Ntpase P4, P4; non- hyd 94.6 0.012 4E-07 58.2 2.1 62 1-87 131-194 (331)
235 1iy2_A ATP-dependent metallopr 94.4 0.3 1E-05 47.6 11.9 138 1-166 81-245 (278)
236 2p65_A Hypothetical protein PF 94.3 0.045 1.5E-06 49.7 5.3 17 1-17 51-67 (187)
237 2bjv_A PSP operon transcriptio 94.2 0.077 2.6E-06 51.5 7.0 31 1-34 37-67 (265)
238 2dhr_A FTSH; AAA+ protein, hex 94.1 0.43 1.5E-05 50.6 13.1 135 1-166 72-236 (499)
239 3pxi_A Negative regulator of g 93.9 0.094 3.2E-06 59.6 7.9 114 1-140 529-675 (758)
240 2qgz_A Helicase loader, putati 93.7 0.017 5.9E-07 57.6 1.3 17 1-17 160-176 (308)
241 2z43_A DNA repair and recombin 93.6 0.2 7E-06 50.2 8.9 85 1-86 115-214 (324)
242 3io5_A Recombination and repai 93.5 0.11 3.8E-06 51.0 6.5 81 1-87 36-123 (333)
243 2cvh_A DNA repair and recombin 93.5 0.18 6E-06 47.2 7.9 79 1-86 28-116 (220)
244 3hr8_A Protein RECA; alpha and 93.5 0.12 4.1E-06 52.2 6.9 79 1-87 69-151 (356)
245 3pxi_A Negative regulator of g 93.5 0.35 1.2E-05 54.9 11.6 67 74-142 266-340 (758)
246 3rfe_A Platelet glycoprotein I 93.3 0.12 4E-06 43.9 5.6 53 332-385 12-66 (130)
247 3lw7_A Adenylate kinase relate 93.3 0.66 2.3E-05 41.2 11.2 68 68-136 69-138 (179)
248 1n0w_A DNA repair protein RAD5 93.3 0.23 7.9E-06 47.2 8.5 85 1-86 32-130 (243)
249 3cf2_A TER ATPase, transitiona 93.3 0.12 4.2E-06 57.9 7.3 137 1-165 519-682 (806)
250 3rfe_A Platelet glycoprotein I 93.2 0.11 3.9E-06 44.0 5.4 14 400-413 33-46 (130)
251 1xp8_A RECA protein, recombina 93.2 0.16 5.5E-06 51.7 7.5 77 1-85 82-162 (366)
252 1v5w_A DMC1, meiotic recombina 93.1 0.3 1E-05 49.3 9.4 50 1-51 130-182 (343)
253 1ojl_A Transcriptional regulat 93.1 0.12 4.2E-06 51.2 6.3 17 1-17 33-49 (304)
254 2w0m_A SSO2452; RECA, SSPF, un 93.0 0.11 3.8E-06 49.1 5.7 104 1-110 31-168 (235)
255 1u94_A RECA protein, recombina 92.8 0.16 5.4E-06 51.5 6.7 77 1-85 71-151 (356)
256 1ypw_A Transitional endoplasmi 92.5 0.43 1.5E-05 54.3 10.4 119 1-143 246-388 (806)
257 3m6a_A ATP-dependent protease 92.3 0.3 1E-05 52.8 8.5 37 101-140 225-266 (543)
258 1pgv_A TMD-1, tropomodulin TMD 92.2 0.081 2.8E-06 48.3 3.2 86 397-485 40-135 (197)
259 3co5_A Putative two-component 91.7 0.095 3.2E-06 45.4 3.0 16 2-17 36-51 (143)
260 1jr3_D DNA polymerase III, del 91.6 1.4 4.9E-05 44.2 12.4 99 73-174 74-186 (343)
261 4a74_A DNA repair and recombin 91.6 0.38 1.3E-05 45.2 7.5 49 1-50 33-84 (231)
262 2zr9_A Protein RECA, recombina 91.5 0.32 1.1E-05 49.1 7.1 78 1-86 69-150 (349)
263 2i1q_A DNA repair and recombin 91.4 0.33 1.1E-05 48.6 7.1 50 1-51 106-168 (322)
264 2r44_A Uncharacterized protein 90.7 0.42 1.4E-05 48.0 7.2 22 121-142 179-200 (331)
265 1r6b_X CLPA protein; AAA+, N-t 90.4 0.2 6.9E-06 56.9 5.0 28 1-34 496-523 (758)
266 1qvr_A CLPB protein; coiled co 89.8 0.63 2.2E-05 53.4 8.4 31 1-34 596-626 (854)
267 3bh0_A DNAB-like replicative h 89.8 1 3.5E-05 44.7 9.0 43 1-48 76-118 (315)
268 2ehv_A Hypothetical protein PH 89.0 0.27 9.4E-06 46.9 4.0 15 1-15 38-52 (251)
269 3sr0_A Adenylate kinase; phosp 87.6 0.85 2.9E-05 42.0 6.2 77 1-93 8-93 (206)
270 2orw_A Thymidine kinase; TMTK, 86.9 0.032 1.1E-06 50.8 -3.9 36 74-109 75-112 (184)
271 2ck3_D ATP synthase subunit be 86.9 1.3 4.3E-05 46.2 7.5 45 2-48 162-207 (482)
272 4eun_A Thermoresistant glucoki 86.9 3.1 0.00011 37.9 9.7 17 1-17 37-53 (200)
273 1ypw_A Transitional endoplasmi 86.5 0.15 5.3E-06 57.9 0.5 118 1-142 519-663 (806)
274 3lda_A DNA repair protein RAD5 86.4 1.5 5.1E-05 45.1 7.8 50 1-51 186-238 (400)
275 3umf_A Adenylate kinase; rossm 86.4 1.7 5.8E-05 40.4 7.5 17 1-17 37-53 (217)
276 3t61_A Gluconokinase; PSI-biol 86.1 1.7 5.7E-05 39.8 7.4 17 1-17 26-42 (202)
277 3cmu_A Protein RECA, recombina 86.0 1.1 3.9E-05 55.2 7.6 77 1-85 1435-1515(2050)
278 1q57_A DNA primase/helicase; d 85.9 1.5 5.3E-05 46.7 8.0 44 1-48 250-293 (503)
279 3ice_A Transcription terminati 85.7 0.42 1.4E-05 48.3 3.1 85 1-87 182-273 (422)
280 4a1f_A DNAB helicase, replicat 85.7 1.7 5.6E-05 43.5 7.5 43 1-48 54-96 (338)
281 2dr3_A UPF0273 protein PH0284; 85.6 1 3.4E-05 42.7 5.8 32 1-35 31-62 (247)
282 2r8r_A Sensor protein; KDPD, P 85.6 0.51 1.8E-05 43.9 3.5 97 1-109 14-126 (228)
283 1fx0_B ATP synthase beta chain 85.4 0.93 3.2E-05 47.4 5.7 45 2-48 174-219 (498)
284 1j8m_F SRP54, signal recogniti 84.6 1.8 6.3E-05 42.4 7.2 81 1-84 106-189 (297)
285 1qhx_A CPT, protein (chloramph 84.5 0.4 1.4E-05 43.0 2.2 17 1-17 11-27 (178)
286 3cwq_A Para family chromosome 84.3 0.71 2.4E-05 42.7 3.9 37 2-42 10-46 (209)
287 3bgw_A DNAB-like replicative h 84.1 1.6 5.5E-05 45.6 6.9 33 1-36 205-237 (444)
288 2px0_A Flagellar biosynthesis 83.9 2.4 8.1E-05 41.6 7.7 77 1-83 113-190 (296)
289 1sky_E F1-ATPase, F1-ATP synth 83.8 1.1 3.8E-05 46.7 5.4 45 1-47 159-204 (473)
290 2c95_A Adenylate kinase 1; tra 83.6 1.7 6E-05 39.3 6.3 17 1-17 17-33 (196)
291 1vma_A Cell division protein F 82.4 1.8 6.1E-05 42.6 6.1 81 1-84 112-195 (306)
292 4dzz_A Plasmid partitioning pr 82.4 0.68 2.3E-05 42.5 2.9 36 2-40 11-46 (206)
293 1pzn_A RAD51, DNA repair and r 81.9 2.8 9.7E-05 42.2 7.5 86 1-87 139-243 (349)
294 3kb2_A SPBC2 prophage-derived 81.8 0.58 2E-05 41.5 2.1 17 1-17 9-25 (173)
295 3kjh_A CO dehydrogenase/acetyl 81.3 1.1 3.8E-05 42.6 4.1 36 2-40 9-44 (254)
296 3vr4_D V-type sodium ATPase su 80.9 1.5 5E-05 45.4 4.9 83 2-87 160-260 (465)
297 2ffh_A Protein (FFH); SRP54, s 80.9 2.6 8.8E-05 43.6 6.8 80 1-84 106-189 (425)
298 3jvv_A Twitching mobility prot 80.7 0.26 8.8E-06 49.9 -0.8 50 64-113 185-234 (356)
299 3trf_A Shikimate kinase, SK; a 80.1 0.72 2.5E-05 41.5 2.2 17 1-17 13-29 (185)
300 2q6t_A DNAB replication FORK h 79.9 4 0.00014 42.6 8.1 43 1-47 208-250 (444)
301 1ly1_A Polynucleotide kinase; 79.9 0.74 2.5E-05 41.2 2.2 15 1-15 10-24 (181)
302 3cmu_A Protein RECA, recombina 79.8 2.7 9.2E-05 52.0 7.4 78 1-86 391-472 (2050)
303 3vaa_A Shikimate kinase, SK; s 79.4 0.79 2.7E-05 42.0 2.2 17 1-17 33-49 (199)
304 2xxa_A Signal recognition part 79.3 3.6 0.00012 42.7 7.4 47 1-50 108-156 (433)
305 1via_A Shikimate kinase; struc 79.3 0.81 2.8E-05 40.8 2.2 17 1-17 12-28 (175)
306 3gmt_A Adenylate kinase; ssgci 79.1 1.6 5.6E-05 40.7 4.2 17 1-17 16-32 (230)
307 1nks_A Adenylate kinase; therm 78.7 0.83 2.8E-05 41.4 2.1 17 1-17 9-25 (194)
308 1kht_A Adenylate kinase; phosp 77.9 0.94 3.2E-05 40.9 2.2 17 1-17 11-27 (192)
309 1cp2_A CP2, nitrogenase iron p 77.6 1.3 4.3E-05 42.8 3.2 32 2-36 10-41 (269)
310 2rhm_A Putative kinase; P-loop 77.6 0.95 3.2E-05 41.0 2.2 17 1-17 13-29 (193)
311 1kag_A SKI, shikimate kinase I 77.5 0.99 3.4E-05 40.0 2.2 17 1-17 12-28 (173)
312 3mfy_A V-type ATP synthase alp 77.2 4.1 0.00014 43.1 6.9 40 2-46 236-276 (588)
313 2j9r_A Thymidine kinase; TK1, 77.1 1.1 3.7E-05 41.3 2.3 101 2-111 37-139 (214)
314 3iij_A Coilin-interacting nucl 76.9 1 3.5E-05 40.3 2.2 17 1-17 19-35 (180)
315 3oaa_A ATP synthase subunit al 76.9 8.3 0.00029 40.2 9.1 82 2-87 171-266 (513)
316 3iqw_A Tail-anchored protein t 76.8 1.9 6.5E-05 43.1 4.3 35 2-39 25-59 (334)
317 1zp6_A Hypothetical protein AT 76.7 1 3.5E-05 40.8 2.1 17 1-17 17-33 (191)
318 2plr_A DTMP kinase, probable t 76.6 2.2 7.6E-05 39.1 4.5 17 1-17 12-28 (213)
319 3k9g_A PF-32 protein; ssgcid, 76.5 1.8 6.2E-05 41.6 3.9 36 2-41 37-72 (267)
320 4akg_A Glutathione S-transfera 76.4 7.7 0.00027 49.7 10.4 126 1-140 1275-1431(2695)
321 1zuh_A Shikimate kinase; alpha 76.2 1.1 3.9E-05 39.5 2.2 17 1-17 15-31 (168)
322 2eyu_A Twitching motility prot 76.1 2 6.9E-05 41.2 4.1 48 65-112 88-135 (261)
323 3cmw_A Protein RECA, recombina 76.1 3.1 0.00011 50.7 6.4 79 1-87 391-473 (1706)
324 2ze6_A Isopentenyl transferase 76.1 1.1 3.7E-05 42.9 2.2 17 1-17 9-25 (253)
325 3gqb_B V-type ATP synthase bet 76.0 2.8 9.7E-05 43.3 5.3 85 2-87 156-263 (464)
326 2jaq_A Deoxyguanosine kinase; 75.3 1.2 4.1E-05 40.7 2.2 17 1-17 8-24 (205)
327 2iyv_A Shikimate kinase, SK; t 75.3 1.2 4.1E-05 40.0 2.2 17 1-17 10-26 (184)
328 3kl4_A SRP54, signal recogniti 75.2 5.1 0.00018 41.4 7.1 48 1-51 105-153 (433)
329 3cmw_A Protein RECA, recombina 75.2 2.8 9.6E-05 51.0 5.8 77 1-85 1439-1519(1706)
330 3l0o_A Transcription terminati 74.9 0.47 1.6E-05 47.9 -0.8 33 2-35 184-216 (427)
331 3cm0_A Adenylate kinase; ATP-b 74.9 1.2 4.2E-05 40.0 2.1 17 1-17 12-28 (186)
332 3ea0_A ATPase, para family; al 74.8 2.1 7.3E-05 40.4 3.9 31 2-35 14-45 (245)
333 1e6c_A Shikimate kinase; phosp 74.4 1.3 4.6E-05 39.1 2.2 17 1-17 10-26 (173)
334 2qor_A Guanylate kinase; phosp 74.3 1.3 4.6E-05 40.6 2.2 17 1-17 20-36 (204)
335 2pt7_A CAG-ALFA; ATPase, prote 74.2 4.8 0.00016 40.1 6.4 95 1-109 179-274 (330)
336 1y63_A LMAJ004144AAA protein; 74.2 1.3 4.6E-05 39.8 2.2 16 1-16 18-33 (184)
337 3dm5_A SRP54, signal recogniti 74.2 8.3 0.00028 39.9 8.3 17 1-17 108-124 (443)
338 2qe7_A ATP synthase subunit al 74.1 5.4 0.00018 41.7 6.8 81 2-87 171-266 (502)
339 3e70_C DPA, signal recognition 74.0 6.4 0.00022 39.1 7.3 48 1-51 137-185 (328)
340 3zq6_A Putative arsenical pump 74.0 2 6.9E-05 42.8 3.6 37 2-41 23-59 (324)
341 1ls1_A Signal recognition part 74.0 5.3 0.00018 39.0 6.6 80 1-84 106-189 (295)
342 2vli_A Antibiotic resistance p 73.9 1 3.6E-05 40.3 1.4 17 1-17 13-29 (183)
343 3uie_A Adenylyl-sulfate kinase 73.5 1.4 4.8E-05 40.3 2.2 17 1-17 33-49 (200)
344 2afh_E Nitrogenase iron protei 73.4 1.5 5.2E-05 42.8 2.5 32 2-36 11-42 (289)
345 1tev_A UMP-CMP kinase; ploop, 73.3 1.4 4.8E-05 39.8 2.1 17 1-17 11-27 (196)
346 2pt5_A Shikimate kinase, SK; a 73.3 1.5 5.1E-05 38.6 2.2 17 1-17 8-24 (168)
347 2cdn_A Adenylate kinase; phosp 73.2 1.4 4.9E-05 40.2 2.1 17 1-17 28-44 (201)
348 1w36_D RECD, exodeoxyribonucle 73.0 5.1 0.00017 43.8 6.8 31 77-107 264-296 (608)
349 2yvu_A Probable adenylyl-sulfa 73.0 1.5 5.1E-05 39.5 2.2 17 1-17 21-37 (186)
350 2fz4_A DNA repair protein RAD2 72.9 5.3 0.00018 37.5 6.1 99 1-108 116-227 (237)
351 1knq_A Gluconate kinase; ALFA/ 72.9 1.5 5.1E-05 39.0 2.2 17 1-17 16-32 (175)
352 3end_A Light-independent proto 72.4 1.8 6.3E-05 42.6 2.9 33 2-37 50-82 (307)
353 2bwj_A Adenylate kinase 5; pho 72.4 1.6 5.4E-05 39.7 2.2 17 1-17 20-36 (199)
354 3a4m_A L-seryl-tRNA(SEC) kinas 72.3 1.5 5.3E-05 42.0 2.2 17 1-17 12-28 (260)
355 3dl0_A Adenylate kinase; phosp 72.3 1.5 5.3E-05 40.5 2.2 17 1-17 8-24 (216)
356 2xj4_A MIPZ; replication, cell 72.2 2 6.8E-05 41.9 3.0 37 2-41 14-51 (286)
357 3fb4_A Adenylate kinase; psych 72.1 1.5 5.2E-05 40.5 2.1 17 1-17 8-24 (216)
358 1aky_A Adenylate kinase; ATP:A 72.1 1.6 5.3E-05 40.7 2.1 17 1-17 12-28 (220)
359 1ex7_A Guanylate kinase; subst 72.1 1.3 4.6E-05 39.9 1.6 17 1-17 9-25 (186)
360 2pbr_A DTMP kinase, thymidylat 72.0 3 0.0001 37.6 4.0 17 1-17 8-24 (195)
361 1fx0_A ATP synthase alpha chai 72.0 4.1 0.00014 42.7 5.4 81 2-87 172-267 (507)
362 2z0h_A DTMP kinase, thymidylat 72.0 3 0.0001 37.7 4.0 17 1-17 8-24 (197)
363 2oze_A ORF delta'; para, walke 71.9 2.1 7.2E-05 42.0 3.2 33 2-37 46-78 (298)
364 1gvn_B Zeta; postsegregational 71.8 1.5 5E-05 42.9 1.9 17 1-17 41-57 (287)
365 1zd8_A GTP:AMP phosphotransfer 71.8 1.6 5.6E-05 40.8 2.2 17 1-17 15-31 (227)
366 3e1s_A Exodeoxyribonuclease V, 71.6 2.6 9E-05 45.6 4.1 31 77-107 281-313 (574)
367 3q9l_A Septum site-determining 71.3 2.3 7.7E-05 40.6 3.2 36 2-40 12-48 (260)
368 2bdt_A BH3686; alpha-beta prot 71.2 1.7 5.8E-05 39.2 2.1 16 1-16 10-25 (189)
369 3zvl_A Bifunctional polynucleo 71.1 5.8 0.0002 41.0 6.4 17 1-17 266-282 (416)
370 1zak_A Adenylate kinase; ATP:A 71.1 1.7 5.7E-05 40.5 2.1 17 1-17 13-29 (222)
371 1kgd_A CASK, peripheral plasma 70.8 1.8 6.1E-05 38.8 2.2 17 1-17 13-29 (180)
372 1wcv_1 SOJ, segregation protei 70.6 1.5 5.2E-05 41.9 1.7 31 2-35 16-46 (257)
373 3io3_A DEHA2D07832P; chaperone 70.4 2.8 9.5E-05 42.1 3.7 34 2-36 27-60 (348)
374 2r6a_A DNAB helicase, replicat 70.1 5 0.00017 42.1 5.7 42 1-46 211-252 (454)
375 3be4_A Adenylate kinase; malar 70.1 1.8 6.3E-05 40.1 2.1 17 1-17 13-29 (217)
376 1ukz_A Uridylate kinase; trans 70.0 1.9 6.4E-05 39.4 2.2 17 1-17 23-39 (203)
377 2r9v_A ATP synthase subunit al 69.9 4.6 0.00016 42.3 5.2 81 2-87 184-279 (515)
378 2ph1_A Nucleotide-binding prot 69.5 3 0.0001 40.0 3.6 32 2-36 28-59 (262)
379 3ug7_A Arsenical pump-driving 69.5 2.3 7.8E-05 42.9 2.8 30 2-34 35-64 (349)
380 1e4v_A Adenylate kinase; trans 69.4 1.9 6.5E-05 39.9 2.1 17 1-17 8-24 (214)
381 1qf9_A UMP/CMP kinase, protein 69.3 2 6.8E-05 38.7 2.2 17 1-17 14-30 (194)
382 2ewv_A Twitching motility prot 69.3 0.78 2.7E-05 46.8 -0.7 47 65-111 199-245 (372)
383 1g3q_A MIND ATPase, cell divis 69.3 2.7 9.2E-05 39.4 3.1 30 2-34 12-41 (237)
384 2woo_A ATPase GET3; tail-ancho 68.9 3 0.0001 41.5 3.6 31 2-35 28-58 (329)
385 2wwf_A Thymidilate kinase, put 68.8 2 7E-05 39.4 2.2 17 1-17 18-34 (212)
386 1ak2_A Adenylate kinase isoenz 68.5 2.1 7.1E-05 40.3 2.1 17 1-17 24-40 (233)
387 1zu4_A FTSY; GTPase, signal re 68.3 4.5 0.00015 40.1 4.6 29 1-32 113-141 (320)
388 3fkq_A NTRC-like two-domain pr 68.3 2 6.9E-05 43.7 2.2 34 2-38 153-186 (373)
389 2xb4_A Adenylate kinase; ATP-b 68.3 2.1 7.2E-05 39.9 2.1 17 1-17 8-24 (223)
390 2bbw_A Adenylate kinase 4, AK4 68.0 2.1 7.3E-05 40.6 2.1 17 1-17 35-51 (246)
391 1yrb_A ATP(GTP)binding protein 68.0 3.8 0.00013 39.0 4.0 17 1-17 22-38 (262)
392 3tau_A Guanylate kinase, GMP k 67.9 2.2 7.6E-05 39.2 2.2 17 1-17 16-32 (208)
393 2yhs_A FTSY, cell division pro 67.8 7.8 0.00027 40.6 6.4 17 1-17 301-317 (503)
394 2c61_A A-type ATP synthase non 67.8 3 0.0001 43.3 3.3 86 2-87 161-261 (469)
395 3pg5_A Uncharacterized protein 67.8 2.3 7.9E-05 43.1 2.4 37 2-41 11-47 (361)
396 2v54_A DTMP kinase, thymidylat 67.6 2.3 7.9E-05 38.8 2.2 17 1-17 12-28 (204)
397 1nn5_A Similar to deoxythymidy 67.5 2.3 7.7E-05 39.2 2.2 17 1-17 17-33 (215)
398 2woj_A ATPase GET3; tail-ancho 67.2 4.4 0.00015 40.8 4.4 38 2-40 27-64 (354)
399 3tlx_A Adenylate kinase 2; str 67.2 2.3 7.8E-05 40.3 2.1 17 1-17 37-53 (243)
400 2if2_A Dephospho-COA kinase; a 67.1 2.3 8E-05 38.8 2.2 16 1-17 9-24 (204)
401 1hyq_A MIND, cell division inh 66.8 3.1 0.00011 39.8 3.1 30 2-34 12-41 (263)
402 1ye8_A Protein THEP1, hypothet 66.8 2.4 8.1E-05 37.9 2.1 17 1-17 8-24 (178)
403 1tue_A Replication protein E1; 66.6 2 7E-05 39.2 1.5 17 1-17 66-82 (212)
404 1cke_A CK, MSSA, protein (cyti 66.1 2.5 8.4E-05 39.4 2.1 17 1-17 13-29 (227)
405 2j41_A Guanylate kinase; GMP, 65.7 2.6 8.7E-05 38.5 2.1 17 1-17 14-30 (207)
406 2p5t_B PEZT; postsegregational 65.6 1.9 6.6E-05 41.1 1.3 17 1-17 40-56 (253)
407 3hws_A ATP-dependent CLP prote 65.5 2.8 9.6E-05 42.4 2.6 17 1-17 59-75 (363)
408 3tr0_A Guanylate kinase, GMP k 65.4 2.7 9.1E-05 38.4 2.2 17 1-17 15-31 (205)
409 3vr4_A V-type sodium ATPase ca 65.3 5.1 0.00017 42.6 4.4 40 2-46 241-281 (600)
410 3hjn_A DTMP kinase, thymidylat 65.3 4.7 0.00016 36.7 3.8 16 2-17 9-24 (197)
411 4eaq_A DTMP kinase, thymidylat 65.2 4.2 0.00014 38.0 3.6 17 1-17 34-50 (229)
412 3crm_A TRNA delta(2)-isopenten 64.9 4.4 0.00015 40.0 3.7 17 1-17 13-29 (323)
413 1m7g_A Adenylylsulfate kinase; 64.7 2.7 9.2E-05 38.7 2.1 17 1-17 33-49 (211)
414 4hlc_A DTMP kinase, thymidylat 64.6 4.3 0.00015 37.2 3.4 23 2-27 11-33 (205)
415 2j37_W Signal recognition part 64.4 16 0.00054 38.6 8.1 30 1-33 109-138 (504)
416 2pez_A Bifunctional 3'-phospho 63.9 3 0.0001 37.1 2.2 17 1-17 13-29 (179)
417 4gp7_A Metallophosphoesterase; 63.9 2.5 8.5E-05 37.5 1.6 14 1-14 17-30 (171)
418 1jjv_A Dephospho-COA kinase; P 63.8 2.8 9.6E-05 38.3 2.0 15 1-15 10-24 (206)
419 3ney_A 55 kDa erythrocyte memb 63.2 3.2 0.00011 37.7 2.2 17 1-17 27-43 (197)
420 3c8u_A Fructokinase; YP_612366 63.1 2.8 9.6E-05 38.5 1.9 17 1-17 30-46 (208)
421 3a00_A Guanylate kinase, GMP k 63.1 3.1 0.00011 37.4 2.1 17 1-17 9-25 (186)
422 2orv_A Thymidine kinase; TP4A 63.0 3.1 0.00011 38.7 2.1 96 3-109 29-125 (234)
423 1rj9_A FTSY, signal recognitio 63.0 10 0.00036 37.0 6.1 17 1-17 110-126 (304)
424 1uf9_A TT1252 protein; P-loop, 62.9 3.2 0.00011 37.7 2.2 16 1-16 16-31 (203)
425 1um8_A ATP-dependent CLP prote 62.9 3.4 0.00012 42.1 2.6 17 1-17 80-96 (376)
426 2qt1_A Nicotinamide riboside k 62.2 3.2 0.00011 38.0 2.1 17 1-17 29-45 (207)
427 3nwj_A ATSK2; P loop, shikimat 62.2 3.2 0.00011 39.4 2.1 17 1-17 56-72 (250)
428 1ltq_A Polynucleotide kinase; 62.1 3.2 0.00011 40.6 2.2 17 1-17 10-26 (301)
429 2grj_A Dephospho-COA kinase; T 62.1 3.4 0.00012 37.5 2.2 17 1-17 20-36 (192)
430 1xx6_A Thymidine kinase; NESG, 62.1 0.99 3.4E-05 41.0 -1.4 100 2-110 17-118 (191)
431 3r20_A Cytidylate kinase; stru 62.0 3.3 0.00011 38.8 2.1 17 1-17 17-33 (233)
432 3llm_A ATP-dependent RNA helic 61.9 17 0.00057 33.9 7.1 86 1-87 84-188 (235)
433 4edh_A DTMP kinase, thymidylat 61.9 7.6 0.00026 35.8 4.6 17 1-17 14-30 (213)
434 2zts_A Putative uncharacterize 61.8 2.9 0.0001 39.4 1.8 40 1-44 38-77 (251)
435 4akg_A Glutathione S-transfera 61.6 30 0.001 44.5 11.1 37 1-43 653-689 (2695)
436 3fwy_A Light-independent proto 61.4 4.4 0.00015 40.0 3.0 30 2-34 57-86 (314)
437 3ez2_A Plasmid partition prote 61.4 4.5 0.00016 41.5 3.3 36 2-37 118-156 (398)
438 2ck3_A ATP synthase subunit al 60.7 11 0.00036 39.6 5.8 86 2-87 171-274 (510)
439 1nlf_A Regulatory protein REPA 60.3 5.2 0.00018 38.7 3.3 35 1-35 38-79 (279)
440 1byi_A Dethiobiotin synthase; 60.3 3.7 0.00013 38.1 2.2 16 2-17 11-26 (224)
441 1gtv_A TMK, thymidylate kinase 60.2 2.1 7.2E-05 39.4 0.4 16 2-17 9-24 (214)
442 1cr0_A DNA primase/helicase; R 60.1 7.3 0.00025 38.0 4.4 44 1-48 43-86 (296)
443 1xjc_A MOBB protein homolog; s 60.0 4 0.00014 36.0 2.2 17 1-17 12-28 (169)
444 4e22_A Cytidylate kinase; P-lo 60.0 3.8 0.00013 39.0 2.2 17 1-17 35-51 (252)
445 3ake_A Cytidylate kinase; CMP 59.7 3.8 0.00013 37.4 2.1 17 1-17 10-26 (208)
446 2qmh_A HPR kinase/phosphorylas 59.6 3.6 0.00012 37.3 1.8 17 1-17 42-58 (205)
447 1lvg_A Guanylate kinase, GMP k 59.4 4 0.00014 37.1 2.2 17 1-17 12-28 (198)
448 1uj2_A Uridine-cytidine kinase 59.3 3.9 0.00013 38.8 2.2 17 1-17 30-46 (252)
449 3asz_A Uridine kinase; cytidin 59.1 4 0.00014 37.5 2.1 17 1-17 14-30 (211)
450 1g41_A Heat shock protein HSLU 58.2 4.2 0.00014 42.1 2.3 17 1-17 58-74 (444)
451 3ch4_B Pmkase, phosphomevalona 57.9 14 0.00049 33.5 5.5 21 78-98 105-125 (202)
452 1rz3_A Hypothetical protein rb 57.7 4.4 0.00015 36.9 2.2 17 1-17 30-46 (201)
453 3a8t_A Adenylate isopentenyltr 57.6 4.2 0.00014 40.4 2.1 17 1-17 48-64 (339)
454 3igf_A ALL4481 protein; two-do 57.0 3.3 0.00011 41.9 1.3 34 2-39 11-44 (374)
455 1znw_A Guanylate kinase, GMP k 57.0 4.4 0.00015 37.1 2.0 17 1-17 28-44 (207)
456 1vht_A Dephospho-COA kinase; s 56.4 4.7 0.00016 37.2 2.2 15 1-15 12-26 (218)
457 3exa_A TRNA delta(2)-isopenten 56.3 4.9 0.00017 39.4 2.3 17 1-17 11-27 (322)
458 3b5x_A Lipid A export ATP-bind 56.0 40 0.0014 36.4 9.8 17 1-17 377-393 (582)
459 3d3q_A TRNA delta(2)-isopenten 55.8 4.8 0.00017 40.0 2.2 17 1-17 15-31 (340)
460 1z6g_A Guanylate kinase; struc 55.6 4.8 0.00016 37.3 2.0 17 1-17 31-47 (218)
461 3nbx_X ATPase RAVA; AAA+ ATPas 55.5 4 0.00014 43.2 1.6 17 1-17 49-65 (500)
462 1htw_A HI0065; nucleotide-bind 55.5 5 0.00017 35.0 2.0 16 2-17 42-57 (158)
463 2ga8_A Hypothetical 39.9 kDa p 55.2 5.1 0.00017 40.1 2.2 17 1-17 32-48 (359)
464 1g8p_A Magnesium-chelatase 38 55.1 3.4 0.00012 41.4 1.0 17 1-17 53-69 (350)
465 3tqf_A HPR(Ser) kinase; transf 54.9 5.6 0.00019 35.1 2.2 17 1-17 24-40 (181)
466 1ihu_A Arsenical pump-driving 54.9 6.2 0.00021 42.9 3.1 33 2-37 17-49 (589)
467 3foz_A TRNA delta(2)-isopenten 54.9 5.3 0.00018 39.1 2.2 17 1-17 18-34 (316)
468 2hf9_A Probable hydrogenase ni 54.4 5.1 0.00017 37.1 2.1 16 2-17 47-62 (226)
469 2i3b_A HCR-ntpase, human cance 54.2 5.7 0.00019 35.8 2.2 17 1-17 9-25 (189)
470 1s96_A Guanylate kinase, GMP k 54.0 5.3 0.00018 37.0 2.1 17 1-17 24-40 (219)
471 2lz0_A Uncharacterized protein 53.8 14 0.00049 29.1 4.3 39 345-384 15-53 (100)
472 2jeo_A Uridine-cytidine kinase 53.5 5.5 0.00019 37.6 2.1 17 1-17 33-49 (245)
473 2ce2_X GTPase HRAS; signaling 53.5 5.5 0.00019 34.3 2.0 16 2-17 12-27 (166)
474 1odf_A YGR205W, hypothetical 3 53.4 5.6 0.00019 38.7 2.2 17 1-17 39-55 (290)
475 1g8f_A Sulfate adenylyltransfe 53.1 5.5 0.00019 42.1 2.2 17 1-17 403-419 (511)
476 3la6_A Tyrosine-protein kinase 53.0 11 0.00039 36.4 4.3 31 2-35 102-132 (286)
477 2ocp_A DGK, deoxyguanosine kin 52.9 5.9 0.0002 37.3 2.2 17 1-17 10-26 (241)
478 1np6_A Molybdopterin-guanine d 52.7 6.3 0.00021 35.0 2.2 17 1-17 14-30 (174)
479 2dyk_A GTP-binding protein; GT 52.5 6.1 0.00021 33.9 2.1 17 1-17 9-25 (161)
480 3v9p_A DTMP kinase, thymidylat 52.2 6.9 0.00024 36.5 2.5 17 1-17 33-49 (227)
481 4tmk_A Protein (thymidylate ki 51.8 11 0.00039 34.6 3.9 17 1-17 11-27 (213)
482 3lv8_A DTMP kinase, thymidylat 51.7 11 0.00038 35.3 3.9 29 1-31 35-63 (236)
483 3aez_A Pantothenate kinase; tr 51.5 6 0.00021 39.0 2.1 31 1-32 98-128 (312)
484 2f6r_A COA synthase, bifunctio 51.5 6 0.00021 38.3 2.1 15 1-15 83-97 (281)
485 1oix_A RAS-related protein RAB 51.0 6.6 0.00023 35.2 2.2 17 1-17 37-53 (191)
486 3bfv_A CAPA1, CAPB2, membrane 50.6 6.9 0.00024 37.6 2.3 31 2-35 92-122 (271)
487 3fdi_A Uncharacterized protein 50.4 9.4 0.00032 34.7 3.1 17 1-17 14-30 (201)
488 1u0j_A DNA replication protein 49.4 7.1 0.00024 37.3 2.1 17 1-17 112-128 (267)
489 3con_A GTPase NRAS; structural 49.4 6.9 0.00023 34.9 2.0 16 2-17 30-45 (190)
490 2zej_A Dardarin, leucine-rich 48.9 6.2 0.00021 35.1 1.6 16 1-16 10-25 (184)
491 2wji_A Ferrous iron transport 48.7 7.3 0.00025 33.9 2.0 17 1-17 11-27 (165)
492 3cio_A ETK, tyrosine-protein k 48.4 9.9 0.00034 37.1 3.1 30 2-34 114-143 (299)
493 2wsm_A Hydrogenase expression/ 48.4 7.7 0.00026 35.7 2.2 17 1-17 38-54 (221)
494 2axn_A 6-phosphofructo-2-kinas 48.2 7.2 0.00025 41.6 2.2 17 1-17 43-59 (520)
495 2f9l_A RAB11B, member RAS onco 48.2 7.6 0.00026 35.0 2.1 17 1-17 13-29 (199)
496 2wjg_A FEOB, ferrous iron tran 48.0 7.6 0.00026 34.5 2.1 16 1-16 15-30 (188)
497 1z2a_A RAS-related protein RAB 48.0 7.8 0.00027 33.5 2.1 16 2-17 14-29 (168)
498 1bif_A 6-phosphofructo-2-kinas 47.5 7.5 0.00026 40.9 2.2 17 1-17 47-63 (469)
499 3qf4_A ABC transporter, ATP-bi 47.3 46 0.0016 35.9 8.5 17 1-17 377-393 (587)
500 3tqc_A Pantothenate kinase; bi 47.3 7.9 0.00027 38.2 2.2 17 1-17 100-116 (321)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.7e-38 Score=350.20 Aligned_cols=283 Identities=14% Similarity=0.153 Sum_probs=224.0
Q ss_pred CCCCcHHHHHHHHHh--hcccCCCCCCEEEEEEeCCcc--CHHHHHHHHHHHcCCCCC-----CCCCccHHHHHHHHHHH
Q 005367 1 MGGVGKTTLLTQINN--KFVDNPTDFDYVIWVVVSKDL--QLEKIQETIRKKIGLCND-----SWKNKSLEEKAQDIFKT 71 (700)
Q Consensus 1 ~gGiGKT~La~~~~~--~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~l~~~ 71 (700)
|||+||||||+++|+ +. .++.+|+.++||++++.. +...++..|+++++.... .....+.+.+...+++.
T Consensus 160 ~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~ 238 (549)
T 2a5y_B 160 RAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNA 238 (549)
T ss_dssp STTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHH
Confidence 899999999999997 33 457899999999998875 789999999999976421 11233456778899999
Q ss_pred hccC-cEEEEEcCCCchhhhhhhcCcCCCCcEEEEecCchhhhhccc-CcceEeccCCChHhHHHHHHHHhcccccCCCC
Q 005367 72 LSKK-KFALLLDDLWERVDLKKIGVPLPKNSAVVFTTRFVDVCGRME-ARRTFKVECLSDEAAWELFREKVGEETIESHH 149 (700)
Q Consensus 72 l~~~-r~LlVlDdv~~~~~~~~l~~~~~~gs~iiiTTr~~~~~~~~~-~~~~~~l~~L~~~~a~~l~~~~~~~~~~~~~~ 149 (700)
|+++ |+||||||||+.+++ .+.. .+||+||||||+..++..+. ....|+|++|++++|++||.++++... ..+
T Consensus 239 L~~~kr~LlVLDdv~~~~~~-~~~~--~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~ 313 (549)
T 2a5y_B 239 LIDRPNTLFVFDDVVQEETI-RWAQ--ELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMP--VGE 313 (549)
T ss_dssp HTTSTTEEEEEEEECCHHHH-HHHH--HTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC----C
T ss_pred HcCCCcEEEEEECCCCchhh-cccc--cCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCC--Cch
Confidence 9996 999999999998865 2211 15999999999999988765 346799999999999999999987643 246
Q ss_pred ChHHHHHHHHHHhCCCchHHHHHHHHhccCCChHHHHHHHHHHHhhhhhccCcchhhccchhcccCCCCccchhHHHh--
Q 005367 150 SIPELAQTVAKECGGLPLALITIGRAMAYKKTPEEWRYAIEVLRRSASEFADLGKEVYPLLKFSYDCLPNDAIRSCFL-- 227 (700)
Q Consensus 150 ~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~~~~~l-- 227 (700)
..++.+.+|+++|+|+||||+++|+.++.+ . |... +.+....+... ..++..++.+||+.||+ +++.||+
T Consensus 314 ~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~~l~~~~--~~~i~~~l~~Sy~~L~~-~lk~~f~~L 385 (549)
T 2a5y_B 314 KEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNNKLESRG--LVGVECITPYSYKSLAM-ALQRCVEVL 385 (549)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHHHHHHHC--SSTTCCCSSSSSSSHHH-HHHHHHHTS
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHHHhhccc--HHHHHHHHhcccccccH-HHHHHHhcc
Confidence 778899999999999999999999999764 2 4333 44444333322 24799999999999999 8999999
Q ss_pred ---------hhcCCCCCceeeHHHHHHHHHHc--CCCCccc--cccchhhHHHHHHHHHhhhhcccc---cCcEeehHHH
Q 005367 228 ---------YCCLYPEDESIDKRDLIDCWICE--GFLDEAK--FGTQNQGYYIVGTLVHACLLEEVE---EDQVKMHDVI 291 (700)
Q Consensus 228 ---------~~~~fp~~~~i~~~~l~~~w~~~--g~~~~~~--~~~~~~~~~~~~~L~~~sli~~~~---~~~~~~h~li 291 (700)
|||+||+++.|+ +..|+++ |++.... ...++.++ ++++|++++|++... ..+|.||+++
T Consensus 386 s~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv 460 (549)
T 2a5y_B 386 SDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHII 460 (549)
T ss_dssp CHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHH
T ss_pred chhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHH
Confidence 999999999999 8899999 8897654 33444454 999999999998763 4579999999
Q ss_pred HHHHHHHHhhh
Q 005367 292 RDMALWITCEI 302 (700)
Q Consensus 292 ~~~~~~~~~~~ 302 (700)
|+|++.++...
T Consensus 461 ~~~a~~~~~~~ 471 (549)
T 2a5y_B 461 HMFLKHVVDAQ 471 (549)
T ss_dssp HHHHHTTSCTH
T ss_pred HHHHHHHHHHH
Confidence 99999877653
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.98 E-value=9.3e-33 Score=307.12 Aligned_cols=257 Identities=17% Similarity=0.230 Sum_probs=203.2
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCE-EEEEEeCCccCHHHHHHHHHHHcCCCC-----CC----CCCccHHHHHHHHHH
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDY-VIWVVVSKDLQLEKIQETIRKKIGLCN-----DS----WKNKSLEEKAQDIFK 70 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~~~~~~-----~~----~~~~~~~~~~~~l~~ 70 (700)
|||+||||||++++++. ++..+|+. ++|+++++..+...++..+++.+.... .. ....+.++....+++
T Consensus 158 mGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~ 236 (1221)
T 1vt4_I 158 VLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236 (1221)
T ss_dssp STTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcCcccccccccccCCCCCHHHHHHHHHH
Confidence 89999999999999875 34567875 999999999888888777777542110 00 011234455666666
Q ss_pred Hh---ccCcEEEEEcCCCchhhhhhhcCcCCCCcEEEEecCchhhhhcccCcceEecc------CCChHhHHHHHHHHhc
Q 005367 71 TL---SKKKFALLLDDLWERVDLKKIGVPLPKNSAVVFTTRFVDVCGRMEARRTFKVE------CLSDEAAWELFREKVG 141 (700)
Q Consensus 71 ~l---~~~r~LlVlDdv~~~~~~~~l~~~~~~gs~iiiTTr~~~~~~~~~~~~~~~l~------~L~~~~a~~l~~~~~~ 141 (700)
.+ .++|+||||||||+.++|+.+. +||+||||||++.++..+.....|+|+ +|+++||++||.+..+
T Consensus 237 lL~~l~~KRvLLVLDDVwd~eqLe~f~----pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g 312 (1221)
T 1vt4_I 237 LLKSKPYENCLLVLLNVQNAKAWNAFN----LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312 (1221)
T ss_dssp HHHHSTTSSCEEEEESCCCHHHHHHHH----SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHC
T ss_pred HHHhhcCCCEEEEEeCcChHHHHHhhC----CCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHcC
Confidence 55 6799999999999999998763 699999999999988654434467777 9999999999999853
Q ss_pred ccccCCCCChHHHHHHHHHHhCCCchHHHHHHHHhccCC-ChHHHHHHHHHHHhhhhhccCcchhhccchhcccCCCCcc
Q 005367 142 EETIESHHSIPELAQTVAKECGGLPLALITIGRAMAYKK-TPEEWRYAIEVLRRSASEFADLGKEVYPLLKFSYDCLPND 220 (700)
Q Consensus 142 ~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~ 220 (700)
.. ..+...++ |+|+|+||+++|+.|+.+. +.+.|... ....+..++..||+.|++
T Consensus 313 ~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~-------------~~~~I~aaLelSYd~Lp~- 368 (1221)
T 1vt4_I 313 CR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV-------------NCDKLTTIIESSLNVLEP- 368 (1221)
T ss_dssp CC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC-------------SCHHHHHHHHHHHHHSCT-
T ss_pred CC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC-------------ChhHHHHHHHHHHHhCCH-
Confidence 21 13344443 9999999999999998863 66777652 125899999999999999
Q ss_pred ch-hHHHhhhcCCCCCceeeHHHHHHHHHHcCCCCccccccchhhHHHHHHHHHhhhhccc-ccCcEeehHHHHHHH
Q 005367 221 AI-RSCFLYCCLYPEDESIDKRDLIDCWICEGFLDEAKFGTQNQGYYIVGTLVHACLLEEV-EEDQVKMHDVIRDMA 295 (700)
Q Consensus 221 ~~-~~~~l~~~~fp~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~~L~~~sli~~~-~~~~~~~h~li~~~~ 295 (700)
+. |.||++||+||+++.|+.+.+...|+++| .+.++.++++|+++||++.. ....|.||++++++.
T Consensus 369 eelK~cFL~LAIFPed~~I~~elLa~LW~aeG---------eedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI---------KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC---------SHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC---------HHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 78 99999999999999999999999997766 24578899999999999976 467899999998854
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=1.7e-31 Score=326.37 Aligned_cols=280 Identities=21% Similarity=0.261 Sum_probs=226.7
Q ss_pred CCCCcHHHHHHHHHhhcccCCC-CCCEEEEEEeCCcc--CHHHHHHHHHHHcCCCCC--CCCCccHHHHHHHHHHHhccC
Q 005367 1 MGGVGKTTLLTQINNKFVDNPT-DFDYVIWVVVSKDL--QLEKIQETIRKKIGLCND--SWKNKSLEEKAQDIFKTLSKK 75 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~-~f~~~~wv~~~~~~--~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~ 75 (700)
|||+||||||++++++...... +++.++||+++... +....+..++..+..... .......++....++..+.++
T Consensus 155 ~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 234 (1249)
T 3sfz_A 155 MAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRK 234 (1249)
T ss_dssp STTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSS
T ss_pred CCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhcc
Confidence 8999999999999998532233 66899999998843 345556777777754331 224567788888999999877
Q ss_pred --cEEEEEcCCCchhhhhhhcCcCCCCcEEEEecCchhhhhc-ccCcceEeccC-CChHhHHHHHHHHhcccccCCCCCh
Q 005367 76 --KFALLLDDLWERVDLKKIGVPLPKNSAVVFTTRFVDVCGR-MEARRTFKVEC-LSDEAAWELFREKVGEETIESHHSI 151 (700)
Q Consensus 76 --r~LlVlDdv~~~~~~~~l~~~~~~gs~iiiTTr~~~~~~~-~~~~~~~~l~~-L~~~~a~~l~~~~~~~~~~~~~~~~ 151 (700)
|+||||||||+.++|+.+ ++|++||||||++.++.. ......+++++ |+++||++||...++.. .+..
T Consensus 235 ~~~~LlvlDd~~~~~~~~~~----~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~----~~~~ 306 (1249)
T 3sfz_A 235 HPRSLLILDDVWDPWVLKAF----DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK----KEDL 306 (1249)
T ss_dssp SCSCEEEEESCCCHHHHTTT----CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC----STTC
T ss_pred CCCEEEEEecCCCHHHHHhh----cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC----hhhC
Confidence 999999999999888776 569999999999999854 45567899996 99999999999988543 2445
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHhccCCChHHHHHHHHHHHhhhhhcc-----CcchhhccchhcccCCCCccchhHHH
Q 005367 152 PELAQTVAKECGGLPLALITIGRAMAYKKTPEEWRYAIEVLRRSASEFA-----DLGKEVYPLLKFSYDCLPNDAIRSCF 226 (700)
Q Consensus 152 ~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~l~~sy~~L~~~~~~~~~ 226 (700)
++.+.+|+++|+|+||||+++|++|+... ..|..+++.+........ .....+..++.+||+.|++ +.|.||
T Consensus 307 ~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~ 383 (1249)
T 3sfz_A 307 PAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYY 383 (1249)
T ss_dssp CTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHH
T ss_pred cHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCH-HHHHHH
Confidence 67899999999999999999999998754 468888888876532211 1114789999999999999 899999
Q ss_pred hhhcCCCCCceeeHHHHHHHHHHcCCCCccccccchhhHHHHHHHHHhhhhcccccC---cEeehHHHHHHHHHHHhh
Q 005367 227 LYCCLYPEDESIDKRDLIDCWICEGFLDEAKFGTQNQGYYIVGTLVHACLLEEVEED---QVKMHDVIRDMALWITCE 301 (700)
Q Consensus 227 l~~~~fp~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~~L~~~sli~~~~~~---~~~~h~li~~~~~~~~~~ 301 (700)
+|||+||+++.|+...++..|.++ .+.++.++++|++++|++....+ +|.||+++|+|++....+
T Consensus 384 ~~l~~f~~~~~i~~~~~~~~~~~~----------~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~ 451 (1249)
T 3sfz_A 384 TDLSILQKDVKVPTKVLCVLWDLE----------TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRS 451 (1249)
T ss_dssp HHGGGSCTTCCEEHHHHHHHHTCC----------HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGG
T ss_pred HHhCccCCCCeeCHHHHHHHhCCC----------HHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhH
Confidence 999999999999999999999433 36778899999999999877444 499999999999988654
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.96 E-value=4.7e-29 Score=279.34 Aligned_cols=274 Identities=21% Similarity=0.286 Sum_probs=210.6
Q ss_pred CCCCcHHHHHHHHHhhcccC-CCCC-CEEEEEEeCCccCHHHHH---HHHHHHcCCC--CCCCCCccHHHHHHHHHHHhc
Q 005367 1 MGGVGKTTLLTQINNKFVDN-PTDF-DYVIWVVVSKDLQLEKIQ---ETIRKKIGLC--NDSWKNKSLEEKAQDIFKTLS 73 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~---~~i~~~~~~~--~~~~~~~~~~~~~~~l~~~l~ 73 (700)
|||+||||||++++++. .. ..+| +.++|++++.. +...+. ..++..++.. .......+.+.....+...+.
T Consensus 155 ~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 232 (591)
T 1z6t_A 155 MAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILML 232 (591)
T ss_dssp CTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESC-CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCC-chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHc
Confidence 79999999999999875 22 4567 68999998765 333333 3334455421 112245567778888888887
Q ss_pred c--CcEEEEEcCCCchhhhhhhcCcCCCCcEEEEecCchhhhhcccCcceEec---cCCChHhHHHHHHHHhcccccCCC
Q 005367 74 K--KKFALLLDDLWERVDLKKIGVPLPKNSAVVFTTRFVDVCGRMEARRTFKV---ECLSDEAAWELFREKVGEETIESH 148 (700)
Q Consensus 74 ~--~r~LlVlDdv~~~~~~~~l~~~~~~gs~iiiTTr~~~~~~~~~~~~~~~l---~~L~~~~a~~l~~~~~~~~~~~~~ 148 (700)
+ +++||||||+|+..+++.+ ++|++||||||+..++..+. ...+++ ++|+.+||++||.+.++...
T Consensus 233 ~~~~~~LLVLDdv~~~~~l~~l----~~~~~ilvTsR~~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~---- 303 (591)
T 1z6t_A 233 RKHPRSLLILDDVWDSWVLKAF----DSQCQILLTTRDKSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKK---- 303 (591)
T ss_dssp HTCTTCEEEEEEECCHHHHHTT----CSSCEEEEEESCGGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG----
T ss_pred cCCCCeEEEEeCCCCHHHHHHh----cCCCeEEEECCCcHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCc----
Confidence 6 7899999999998777654 66999999999988876543 345555 58999999999999986522
Q ss_pred CChHHHHHHHHHHhCCCchHHHHHHHHhccCCChHHHHHHHHHHHhhhhhc-----cCcchhhccchhcccCCCCccchh
Q 005367 149 HSIPELAQTVAKECGGLPLALITIGRAMAYKKTPEEWRYAIEVLRRSASEF-----ADLGKEVYPLLKFSYDCLPNDAIR 223 (700)
Q Consensus 149 ~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~l~~sy~~L~~~~~~ 223 (700)
....+.+.+|+++|+|+|+||.++|++++... ..|..+++.+....... ......+..++..||+.|++ +.+
T Consensus 304 ~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~ 380 (591)
T 1z6t_A 304 ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIK 380 (591)
T ss_dssp GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTH
T ss_pred ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCH-HHH
Confidence 22256789999999999999999999998753 46888888876543211 11224788999999999999 899
Q ss_pred HHHhhhcCCCCCceeeHHHHHHHHHHcCCCCccccccchhhHHHHHHHHHhhhhcccc---cCcEeehHHHHHHHHHH
Q 005367 224 SCFLYCCLYPEDESIDKRDLIDCWICEGFLDEAKFGTQNQGYYIVGTLVHACLLEEVE---EDQVKMHDVIRDMALWI 298 (700)
Q Consensus 224 ~~~l~~~~fp~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~~L~~~sli~~~~---~~~~~~h~li~~~~~~~ 298 (700)
.||+++|+||+++.|+...+...|..+ .+.+..++..|++++|+.... ...|.||++++++++..
T Consensus 381 ~~l~~la~f~~~~~i~~~~l~~l~~~~----------~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 381 DYYTDLSILQKDVKVPTKVLCILWDME----------TEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp HHHHHGGGCCTTCCEEHHHHHHHHTCC----------HHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred HHHHHccccCCCCccCHHHHHHHhccC----------HHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 999999999999999999999988432 245778899999999998652 34799999999999877
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=7.5e-25 Score=228.46 Aligned_cols=287 Identities=17% Similarity=0.174 Sum_probs=163.6
Q ss_pred cccccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccccccccceec
Q 005367 325 RGWEMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQLLD 404 (700)
Q Consensus 325 ~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~ 404 (700)
..+++++.|++.++.+..++.+..+++|++|++++|.++..++ +..+++|++|++++| .++.++ .+..+++|++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEE
T ss_pred hhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEE
Confidence 3455666666666666666666666666666666666665554 566666666666666 444443 466666666666
Q ss_pred cccCcccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcceEEEE
Q 005367 405 ISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEIT 484 (700)
Q Consensus 405 l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 484 (700)
+++|.+..++. +..+++|+.|++++|......+. +..+++|+.|++++|.+.... .+..+++|+.|+++
T Consensus 117 l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~--------~~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 117 LNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVT--------PIANLTDLYSLSLN 185 (347)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCG--------GGGGCTTCSEEECT
T ss_pred CcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCch--------hhccCCCCCEEEcc
Confidence 66666666554 56666666666666654444443 566666666666666543211 15566666666666
Q ss_pred EecchhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEeccccccceeecccccccccCCccccCCcc
Q 005367 485 FRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLE 564 (700)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~ 564 (700)
+|.+.....+ ...++|+.+++.++...... .+..+++|++|++++|.... ++. . ..+++|+
T Consensus 186 ~n~l~~~~~~----~~l~~L~~L~l~~n~l~~~~---~~~~~~~L~~L~l~~n~l~~-~~~--~---------~~l~~L~ 246 (347)
T 4fmz_A 186 YNQIEDISPL----ASLTSLHYFTAYVNQITDIT---PVANMTRLNSLKIGNNKITD-LSP--L---------ANLSQLT 246 (347)
T ss_dssp TSCCCCCGGG----GGCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECCSSCCCC-CGG--G---------TTCTTCC
T ss_pred CCcccccccc----cCCCccceeecccCCCCCCc---hhhcCCcCCEEEccCCccCC-Ccc--h---------hcCCCCC
Confidence 6665554431 22335666666655422211 14455666666666654222 111 1 2466667
Q ss_pred EEeeecCcCcccccccccCCCCceEEeeeccccccccccccCCCCCCccCCCCCCCCccceeeccCcccccccccCCCCC
Q 005367 565 EVTVRFCRKLKHLTFLVFAPNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPFAKLQRLRLEGLGRLKSIYWKPLPL 644 (700)
Q Consensus 565 ~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~ 644 (700)
+|++++| .+..++.+..+++|+.|++++| .++++ ..+..+++|+.|++++|.-....+.....+
T Consensus 247 ~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~--------------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 310 (347)
T 4fmz_A 247 WLEIGTN-QISDINAVKDLTKLKMLNVGSN-QISDI--------------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGL 310 (347)
T ss_dssp EEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCC--------------GGGGGCTTCSEEECCSSCCCGGGHHHHHTC
T ss_pred EEECCCC-ccCCChhHhcCCCcCEEEccCC-ccCCC--------------hhhcCCCCCCEEECcCCcCCCcChhHhhcc
Confidence 7777665 4455556666666777766665 23322 124456666666666653222222223346
Q ss_pred CCccEEEEcCCCCCCCCC
Q 005367 645 PRLKELEVRGCDSLEKLP 662 (700)
Q Consensus 645 ~~L~~L~i~~C~~L~~lp 662 (700)
++|++|++++|+ ++.++
T Consensus 311 ~~L~~L~L~~n~-l~~~~ 327 (347)
T 4fmz_A 311 TNLTTLFLSQNH-ITDIR 327 (347)
T ss_dssp TTCSEEECCSSS-CCCCG
T ss_pred ccCCEEEccCCc-ccccc
Confidence 666677766664 55544
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=6e-24 Score=221.64 Aligned_cols=299 Identities=15% Similarity=0.159 Sum_probs=240.4
Q ss_pred cceEEEcCCCCCCCCccccccccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcc
Q 005367 307 EGFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNET 386 (700)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 386 (700)
-..+.+.+..+..+| .+..+++|+.|++++|.++.++.+..+++|++|++++|.++..+ .+..+++|++|++++| .
T Consensus 46 L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~--~~~~l~~L~~L~l~~n-~ 121 (347)
T 4fmz_A 46 ITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLNED-N 121 (347)
T ss_dssp CSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECTTS-C
T ss_pred ccEEEEeCCccccch-hhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch--HHcCCCcCCEEECcCC-c
Confidence 356778888888885 48889999999999999999998999999999999999988764 3889999999999999 5
Q ss_pred cccCCcccccccccceeccccCcccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCccc
Q 005367 387 LRQLPMGISKLVSLQLLDISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHE 466 (700)
Q Consensus 387 ~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 466 (700)
+..++. +..+++|++|++++|.....+..+..+++|++|++++|. +...+. +..+++|+.|++++|.+...
T Consensus 122 i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~~~----- 192 (347)
T 4fmz_A 122 ISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQIEDI----- 192 (347)
T ss_dssp CCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCCCCC-----
T ss_pred ccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCccccc-----
Confidence 677765 889999999999999655444568999999999999985 445554 77999999999999987432
Q ss_pred chHHHHhcCCCcceEEEEEecchhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEeccccccceeec
Q 005367 467 NVAEELLGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGLKID 546 (700)
Q Consensus 467 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~ 546 (700)
+ .+..+++|+.|++++|.+.....+ ...++|+.|++++|..... + .+..+++|++|++++|. +..+ .
T Consensus 193 --~-~~~~l~~L~~L~l~~n~l~~~~~~----~~~~~L~~L~l~~n~l~~~-~--~~~~l~~L~~L~l~~n~-l~~~--~ 259 (347)
T 4fmz_A 193 --S-PLASLTSLHYFTAYVNQITDITPV----ANMTRLNSLKIGNNKITDL-S--PLANLSQLTWLEIGTNQ-ISDI--N 259 (347)
T ss_dssp --G-GGGGCTTCCEEECCSSCCCCCGGG----GGCTTCCEEECCSSCCCCC-G--GGTTCTTCCEEECCSSC-CCCC--G
T ss_pred --c-cccCCCccceeecccCCCCCCchh----hcCCcCCEEEccCCccCCC-c--chhcCCCCCEEECCCCc-cCCC--h
Confidence 1 278899999999999988776552 3345899999999864332 2 27778999999999986 3322 2
Q ss_pred ccccccccCCccccCCccEEeeecCcCcccccccccCCCCceEEeeeccccccccccccCCCCCCccCCCCCCCCcccee
Q 005367 547 YKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLTFLVFAPNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPFAKLQRL 626 (700)
Q Consensus 547 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 626 (700)
.. ..+++|++|++++| .+..++.+..+++|+.|++++|. +++... ..+..+++|+.|
T Consensus 260 ~~---------~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~------------~~l~~l~~L~~L 316 (347)
T 4fmz_A 260 AV---------KDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQ-LGNEDM------------EVIGGLTNLTTL 316 (347)
T ss_dssp GG---------TTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCGGGH------------HHHHTCTTCSEE
T ss_pred hH---------hcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCc-CCCcCh------------hHhhccccCCEE
Confidence 22 36899999999998 67778889999999999999985 333322 345678999999
Q ss_pred eccCcccccccccCCCCCCCccEEEEcCCC
Q 005367 627 RLEGLGRLKSIYWKPLPLPRLKELEVRGCD 656 (700)
Q Consensus 627 ~l~~c~~l~~l~~~~~~~~~L~~L~i~~C~ 656 (700)
++++|+ ++.++. ...+++|++|++++|+
T Consensus 317 ~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 317 FLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp ECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred EccCCc-cccccC-hhhhhccceeehhhhc
Confidence 999975 666544 5568999999999984
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=2.4e-23 Score=226.93 Aligned_cols=309 Identities=21% Similarity=0.238 Sum_probs=209.3
Q ss_pred eEEEcCCCCCCCCccccccccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcc
Q 005367 309 FLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNET 386 (700)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 386 (700)
.+...+.++..+|..+. ++++.|++++|.++.++ .|..+++|++|++++|.++...+..|.++++|++|+|++| .
T Consensus 15 ~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~ 91 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-R 91 (477)
T ss_dssp EEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-C
T ss_pred EEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-c
Confidence 45566788888988775 68999999999999885 6899999999999999999998888999999999999999 5
Q ss_pred cccCCc-ccccccccceeccccCccccc-chhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCc
Q 005367 387 LRQLPM-GISKLVSLQLLDISYTRVREL-PEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSW 464 (700)
Q Consensus 387 ~~~lp~-~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 464 (700)
++.+|. .++.+++|++|++++|++..+ +..+..+++|++|++++|.. ..++...+.++++|+.|++++|.+...
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~--- 167 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL-VYISHRAFSGLNSLEQLTLEKCNLTSI--- 167 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTC-CEECTTSSTTCTTCCEEEEESCCCSSC---
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcc-ceeChhhccCCCCCCEEECCCCcCccc---
Confidence 677765 478899999999999999854 56788999999999999854 445444488999999999999877432
Q ss_pred ccchHHHHhcCCCcceEEEEEecchhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEecccccccee
Q 005367 465 HENVAEELLGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGLK 544 (700)
Q Consensus 465 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~ 544 (700)
.+..+..+++|+.|++++|.+...... .....++|+.|+++++......+...+ ...+|++|++++|. +..++
T Consensus 168 ---~~~~l~~l~~L~~L~l~~n~i~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~-l~~~~ 240 (477)
T 2id5_A 168 ---PTEALSHLHGLIVLRLRHLNINAIRDY--SFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCN-LTAVP 240 (477)
T ss_dssp ---CHHHHTTCTTCCEEEEESCCCCEECTT--CSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSC-CCSCC
T ss_pred ---ChhHhcccCCCcEEeCCCCcCcEeChh--hcccCcccceeeCCCCccccccCcccc-cCccccEEECcCCc-ccccC
Confidence 345688999999999998877654321 111223556666666554444432222 22366666666554 22222
Q ss_pred ecccccccccCCccccCCccEEeeecCcCccccc--ccccCCCCceEEeeeccccccccccccCCCCCCccCCCCCCCCc
Q 005367 545 IDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLT--FLVFAPNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPFAK 622 (700)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (700)
...+. .+++|++|+++++. +..++ .+..+++|+.|+|+++ .++.+.. ..+..+++
T Consensus 241 ~~~~~---------~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~------------~~~~~l~~ 297 (477)
T 2id5_A 241 YLAVR---------HLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGG-QLAVVEP------------YAFRGLNY 297 (477)
T ss_dssp HHHHT---------TCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSS-CCSEECT------------TTBTTCTT
T ss_pred HHHhc---------CccccCeeECCCCc-CCccChhhccccccCCEEECCCC-ccceECH------------HHhcCccc
Confidence 22222 35666666666653 33332 2555666666666654 2333221 24455666
Q ss_pred cceeeccCcccccccccC-CCCCCCccEEEEcCC
Q 005367 623 LQRLRLEGLGRLKSIYWK-PLPLPRLKELEVRGC 655 (700)
Q Consensus 623 L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~i~~C 655 (700)
|+.|+|+++ .++.++.. ...+++|++|+++++
T Consensus 298 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 298 LRVLNVSGN-QLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp CCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSS
T ss_pred CCEEECCCC-cCceeCHhHcCCCcccCEEEccCC
Confidence 666666654 44444432 233566666666554
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=1.4e-23 Score=236.21 Aligned_cols=146 Identities=23% Similarity=0.287 Sum_probs=95.1
Q ss_pred eEEEcCCCCCCCCccccccccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcc
Q 005367 309 FLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNET 386 (700)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 386 (700)
.+...+.++..+|..+. ++++.|++++|.++.++ .+..+++|++|++++|.++.+++..|.++++|++|+|++|.
T Consensus 15 ~~~c~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~- 91 (606)
T 3vq2_A 15 TYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP- 91 (606)
T ss_dssp EEECTTSCCSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-
T ss_pred ceEccCCCcccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc-
Confidence 34455666777766554 56777777777776665 36677777777777777766666666677777777777773
Q ss_pred cccC-CcccccccccceeccccCcccccc-hhhhcCCCCCEEecccccCcc-ccchhhhcCCCccceeeccccCc
Q 005367 387 LRQL-PMGISKLVSLQLLDISYTRVRELP-EELKALVNLRCLNLDWAGELV-KVPQQLLSNFSRLRVLRMFATGL 458 (700)
Q Consensus 387 ~~~l-p~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~-~~p~~~~~~l~~L~~L~l~~~~~ 458 (700)
++.+ |..++++++|++|++++|.+..++ ..++++++|++|++++|.... .+|.. ++++++|++|++++|.+
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCC
T ss_pred ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcc
Confidence 3333 666677777777777777766554 446667777777777664432 34554 66677777777766654
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=8.3e-25 Score=246.20 Aligned_cols=331 Identities=14% Similarity=0.163 Sum_probs=205.7
Q ss_pred CCCCCCccccccccceeeeeccccccC------------------CC-CCC--CCCceeEEEecCCCCcccccccccCCC
Q 005367 316 GLTEAPADVRGWEMGRRLSLMKNSIKN------------------LP-TIP--TCPHLLTLFLNRNPLTTIAGGFFQSMP 374 (700)
Q Consensus 316 ~~~~~~~~~~~~~~l~~l~l~~~~~~~------------------l~-~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~ 374 (700)
.+..+|..+.++++|+.|++++|.++. +| .+. .+++|++|++++|.+.+..|..+.+++
T Consensus 194 ~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 273 (636)
T 4eco_A 194 NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273 (636)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS
T ss_pred CCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCC
Confidence 344467778888888888888888887 77 556 788888888888887777777788888
Q ss_pred cceEEEccCCcccc--cCCcccccc------cccceeccccCcccccch--hhhcCCCCCEEecccccCccccchhhhcC
Q 005367 375 CLTVLKMSGNETLR--QLPMGISKL------VSLQLLDISYTRVRELPE--ELKALVNLRCLNLDWAGELVKVPQQLLSN 444 (700)
Q Consensus 375 ~L~~L~L~~~~~~~--~lp~~~~~l------~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~p~~~~~~ 444 (700)
+|++|++++|..++ .+|..++.+ ++|++|++++|+++.+|. .++.+++|+.|++++|...+.+| . +++
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~ 351 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGS 351 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEE
T ss_pred CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCC
Confidence 88888888885244 577777765 888888888888888887 78888888888888886555777 3 777
Q ss_pred CCccceeeccccCcccccCcccchHHHHhcCCC-cceEEEEEecchhhHhhhhcccccccchhhhccccCCCc-------
Q 005367 445 FSRLRVLRMFATGLISFYSWHENVAEELLGLKY-LEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREE------- 516 (700)
Q Consensus 445 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------- 516 (700)
+++|+.|++++|.+. ..+..+..+++ |++|++++|.+..++....... ..+|+.|+++++....
T Consensus 352 l~~L~~L~L~~N~l~-------~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~-l~~L~~L~Ls~N~l~~~~p~~l~ 423 (636)
T 4eco_A 352 EIKLASLNLAYNQIT-------EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKS-VSVMSAIDFSYNEIGSVDGKNFD 423 (636)
T ss_dssp EEEESEEECCSSEEE-------ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTC-SSCEEEEECCSSCTTTTTTCSSC
T ss_pred CCCCCEEECCCCccc-------cccHhhhhhcccCcEEEccCCcCcccchhhhhcc-cCccCEEECcCCcCCCcchhhhc
Confidence 888888888877663 23444666776 7777777776664443211110 1144555555443211
Q ss_pred -----------------------eeeecCcCccccccEEEEeccccccceeecccccccccCCccccCCccEEeeecCcC
Q 005367 517 -----------------------SIDVAGLADLEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEVTVRFCRK 573 (700)
Q Consensus 517 -----------------------~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 573 (700)
..+...+..+++|+.|++++|... .++....... .+....+++|++|++++|.
T Consensus 424 ~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~--~~~~~~l~~L~~L~Ls~N~- 499 (636)
T 4eco_A 424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDE--NENFKNTYLLTSIDLRFNK- 499 (636)
T ss_dssp TTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEET--TEECTTGGGCCEEECCSSC-
T ss_pred ccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccc--cccccccCCccEEECcCCc-
Confidence 111111222455555555554422 2222211100 0000112377777777763
Q ss_pred ccccc-ccc--cCCCCceEEeeeccccccccccccCCCCCCccCCCCCCCCccceeeccC------cccccccccCCCCC
Q 005367 574 LKHLT-FLV--FAPNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPFAKLQRLRLEG------LGRLKSIYWKPLPL 644 (700)
Q Consensus 574 l~~l~-~l~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------c~~l~~l~~~~~~~ 644 (700)
+..+| .+. .+++|+.|+++++. ++.+ | ..+..+++|+.|++++ +.-...++.....+
T Consensus 500 l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~i---------p----~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l 565 (636)
T 4eco_A 500 LTKLSDDFRATTLPYLVGIDLSYNS-FSKF---------P----TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC 565 (636)
T ss_dssp CCBCCGGGSTTTCTTCCEEECCSSC-CSSC---------C----CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGC
T ss_pred CCccChhhhhccCCCcCEEECCCCC-CCCc---------C----hhhhcCCCCCEEECCCCcccccCcccccChHHHhcC
Confidence 33444 344 67777888777753 3322 2 3455677888888754 22344555555567
Q ss_pred CCccEEEEcCCCCCCCCCCCCCCc--ceEeecc
Q 005367 645 PRLKELEVRGCDSLEKLPLDSNGR--RILIRGH 675 (700)
Q Consensus 645 ~~L~~L~i~~C~~L~~lp~~~~~~--~~~i~~~ 675 (700)
++|++|++++| +++.+|...... .+.++++
T Consensus 566 ~~L~~L~Ls~N-~l~~ip~~~~~~L~~L~Ls~N 597 (636)
T 4eco_A 566 PSLTQLQIGSN-DIRKVNEKITPNISVLDIKDN 597 (636)
T ss_dssp SSCCEEECCSS-CCCBCCSCCCTTCCEEECCSC
T ss_pred CCCCEEECCCC-cCCccCHhHhCcCCEEECcCC
Confidence 88888888777 447777543322 5555554
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=5.2e-24 Score=236.75 Aligned_cols=147 Identities=22% Similarity=0.299 Sum_probs=120.6
Q ss_pred EEEcCCCCCCCCccccccccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCccc
Q 005367 310 LVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETL 387 (700)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 387 (700)
+...+.++..+|..+. ++++.|++++|.++.++ .+..+++|++|++++|.++..++..|..+++|++|++++| .+
T Consensus 10 c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l 86 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HL 86 (549)
T ss_dssp EECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CC
T ss_pred EECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-cc
Confidence 5556778888888765 78999999999988775 5788999999999999988888877889999999999999 45
Q ss_pred ccCCc-ccccccccceeccccCcccc--cchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcc
Q 005367 388 RQLPM-GISKLVSLQLLDISYTRVRE--LPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLI 459 (700)
Q Consensus 388 ~~lp~-~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~ 459 (700)
+.++. .++.+++|++|++++|.+.. .|..++.+++|++|++++|...+.+|...++++++|++|++++|.+.
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 55554 48889999999999998884 46678889999999999887677777555888899999999888764
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=2e-24 Score=247.10 Aligned_cols=330 Identities=14% Similarity=0.157 Sum_probs=225.7
Q ss_pred CCCCCccccccccceeeeeccccccC------------------CC-CCC--CCCceeEEEecCCCCcccccccccCCCc
Q 005367 317 LTEAPADVRGWEMGRRLSLMKNSIKN------------------LP-TIP--TCPHLLTLFLNRNPLTTIAGGFFQSMPC 375 (700)
Q Consensus 317 ~~~~~~~~~~~~~l~~l~l~~~~~~~------------------l~-~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 375 (700)
+..+|..+.++++|+.|++++|.+.. +| .+. .+++|++|++++|.+.+..|..+.++++
T Consensus 437 L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~ 516 (876)
T 4ecn_A 437 ITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE 516 (876)
T ss_dssp EEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSS
T ss_pred ccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCC
Confidence 33388899999999999999999998 77 455 8999999999999988877788999999
Q ss_pred ceEEEccCCcccc--cCCccccccc-------ccceeccccCcccccch--hhhcCCCCCEEecccccCccccchhhhcC
Q 005367 376 LTVLKMSGNETLR--QLPMGISKLV-------SLQLLDISYTRVRELPE--ELKALVNLRCLNLDWAGELVKVPQQLLSN 444 (700)
Q Consensus 376 L~~L~L~~~~~~~--~lp~~~~~l~-------~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~p~~~~~~ 444 (700)
|++|+|++|..++ .+|..++.++ +|++|++++|++..+|. .++++++|+.|++++|.. ..+| . +++
T Consensus 517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l-~~lp-~-~~~ 593 (876)
T 4ecn_A 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV-RHLE-A-FGT 593 (876)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCC-CBCC-C-CCT
T ss_pred CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCc-ccch-h-hcC
Confidence 9999999996244 5787777666 99999999999999998 899999999999999865 4788 3 889
Q ss_pred CCccceeeccccCcccccCcccchHHHHhcCCC-cceEEEEEecchhhHhhhhcccccccchhhhccccCCCcee-----
Q 005367 445 FSRLRVLRMFATGLISFYSWHENVAEELLGLKY-LEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESI----- 518 (700)
Q Consensus 445 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----- 518 (700)
+++|+.|++++|.+.. .+..+..+++ |+.|++++|.+..++....... ..+|+.|+++++......
T Consensus 594 L~~L~~L~Ls~N~l~~-------lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~-~~~L~~L~Ls~N~l~g~ip~l~~ 665 (876)
T 4ecn_A 594 NVKLTDLKLDYNQIEE-------IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKS-VYVMGSVDFSYNKIGSEGRNISC 665 (876)
T ss_dssp TSEESEEECCSSCCSC-------CCTTSCEECTTCCEEECCSSCCCSCCSCCCTTC-SSCEEEEECCSSCTTTTSSSCSS
T ss_pred CCcceEEECcCCcccc-------chHHHhhccccCCEEECcCCCCCcCchhhhccc-cCCCCEEECcCCcCCCccccchh
Confidence 9999999999988742 3445777888 9999999888775543221111 113666666655422111
Q ss_pred -----------------------eecCcCccccccEEEEeccccccceeecccccccccCCccccCCccEEeeecCcCcc
Q 005367 519 -----------------------DVAGLADLEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEVTVRFCRKLK 575 (700)
Q Consensus 519 -----------------------~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 575 (700)
+...+..+++|+.|++++|. +..++...... ..+....+++|+.|+|++| .+.
T Consensus 666 ~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~--~~~~l~nl~~L~~L~Ls~N-~L~ 741 (876)
T 4ecn_A 666 SMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL-MTSIPENSLKP--KDGNYKNTYLLTTIDLRFN-KLT 741 (876)
T ss_dssp CTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC-CSCCCTTSSSC--TTSCCTTGGGCCEEECCSS-CCC
T ss_pred hhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc-CCccChHHhcc--ccccccccCCccEEECCCC-CCc
Confidence 10111134455555555543 22222211110 0000112347888888887 444
Q ss_pred ccc-ccc--cCCCCceEEeeeccccccccccccCCCCCCccCCCCCCCCccceeeccC------cccccccccCCCCCCC
Q 005367 576 HLT-FLV--FAPNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPFAKLQRLRLEG------LGRLKSIYWKPLPLPR 646 (700)
Q Consensus 576 ~l~-~l~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------c~~l~~l~~~~~~~~~ 646 (700)
.+| .+. .+++|+.|+|+++. ++.+ | ..+..+++|+.|+|++ +.-...+|.....+++
T Consensus 742 ~lp~~l~~~~l~~L~~L~Ls~N~-L~~l---------p----~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~ 807 (876)
T 4ecn_A 742 SLSDDFRATTLPYLSNMDVSYNC-FSSF---------P----TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS 807 (876)
T ss_dssp CCCGGGSTTTCTTCCEEECCSSC-CSSC---------C----CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSS
T ss_pred cchHHhhhccCCCcCEEEeCCCC-CCcc---------c----hhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCC
Confidence 554 344 77888888888753 3322 2 3556788888888876 3334455655666888
Q ss_pred ccEEEEcCCCCCCCCCCCCCCc--ceEeecch
Q 005367 647 LKELEVRGCDSLEKLPLDSNGR--RILIRGHE 676 (700)
Q Consensus 647 L~~L~i~~C~~L~~lp~~~~~~--~~~i~~~~ 676 (700)
|++|++++| ++..+|...... .+.+++|+
T Consensus 808 L~~L~Ls~N-~L~~Ip~~l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 808 LIQLQIGSN-DIRKVDEKLTPQLYILDIADNP 838 (876)
T ss_dssp CCEEECCSS-CCCBCCSCCCSSSCEEECCSCT
T ss_pred CCEEECCCC-CCCccCHhhcCCCCEEECCCCC
Confidence 888888888 458888654322 56666654
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=1.5e-23 Score=234.28 Aligned_cols=338 Identities=17% Similarity=0.125 Sum_probs=179.6
Q ss_pred eEEEcCCCCCCCCc-cccccccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCc
Q 005367 309 FLVYAGSGLTEAPA-DVRGWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNE 385 (700)
Q Consensus 309 ~~~~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 385 (700)
.+.+.++.+..++. .+.++++|+.|++++|.++.++ .|..+++|++|++++|.++..++..|.++++|++|++++|
T Consensus 32 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n- 110 (570)
T 2z63_A 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET- 110 (570)
T ss_dssp EEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-
T ss_pred EEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc-
Confidence 34455555554432 4555666666666666665554 3556666666666666666665555666666666666666
Q ss_pred ccccCCc-ccccccccceeccccCcccc--cchhhhcCCCCCEEecccccCccccchhhhcCCCcc----ceeeccccCc
Q 005367 386 TLRQLPM-GISKLVSLQLLDISYTRVRE--LPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRL----RVLRMFATGL 458 (700)
Q Consensus 386 ~~~~lp~-~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L----~~L~l~~~~~ 458 (700)
.++.++. .++.+++|++|++++|.+.. +|..++++++|++|++++|.. ..++...++.+++| +.|++++|.+
T Consensus 111 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~~~~~L~l~~n~l 189 (570)
T 2z63_A 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPM 189 (570)
T ss_dssp CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC-CEECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcc-ceecHHHccchhccchhhhhcccCCCCc
Confidence 3444443 46666666666666666653 566666666666666666643 22322223333333 3444444332
Q ss_pred cccc---------------------------------------------------------------------------C
Q 005367 459 ISFY---------------------------------------------------------------------------S 463 (700)
Q Consensus 459 ~~~~---------------------------------------------------------------------------~ 463 (700)
.... .
T Consensus 190 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~ 269 (570)
T 2z63_A 190 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269 (570)
T ss_dssp CEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTE
T ss_pred eecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchh
Confidence 1110 0
Q ss_pred cccchHHHHhcCCCcceEEEEEecchhhHhhhhcc---------------------------------------cccccc
Q 005367 464 WHENVAEELLGLKYLEVLEITFRRFEAYQTFLSSQ---------------------------------------KLRSCT 504 (700)
Q Consensus 464 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~---------------------------------------~~~~~L 504 (700)
.....+..+..+++|+.|++++|.+..++...... ...++|
T Consensus 270 ~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L 349 (570)
T 2z63_A 270 YLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSL 349 (570)
T ss_dssp EESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTC
T ss_pred hhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCC
Confidence 00111233445566677776666554333211100 123456
Q ss_pred hhhhccccCCCceee-ecCcCccccccEEEEeccccccceeeccccc--------------cccc--CCccccCCccEEe
Q 005367 505 QALFLHEFDREESID-VAGLADLEQLNTLIFYSCDWIKGLKIDYKDM--------------VQKS--RQPYVFRSLEEVT 567 (700)
Q Consensus 505 ~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~--------------~~~~--~~~~~~~~L~~L~ 567 (700)
+.|+++++....... ...+..+++|++|++++|... .++.. +.. .... .....+++|++|+
T Consensus 350 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 427 (570)
T 2z63_A 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427 (570)
T ss_dssp CEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEE
T ss_pred CEEeCcCCccCccccccccccccCccCEEECCCCccc-ccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEe
Confidence 666666654222111 133455678888888776532 22222 110 0000 1123455566666
Q ss_pred eecCcCccccc-ccccCCCCceEEeeeccccccccccccCCCCCCccCCCCCCCCccceeeccCccccccc-ccCCCCCC
Q 005367 568 VRFCRKLKHLT-FLVFAPNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPFAKLQRLRLEGLGRLKSI-YWKPLPLP 645 (700)
Q Consensus 568 l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~ 645 (700)
+++|......+ .++.+++|+.|++++|...... +| ..+..+++|+.|++++| .++.+ +.....++
T Consensus 428 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------~p----~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~ 494 (570)
T 2z63_A 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF--------LP----DIFTELRNLTFLDLSQC-QLEQLSPTAFNSLS 494 (570)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE--------EC----SCCTTCTTCCEEECTTS-CCCEECTTTTTTCT
T ss_pred CcCCcccccchhhhhcCCcCcEEECcCCcCcccc--------ch----hhhhcccCCCEEECCCC-ccccCChhhhhccc
Confidence 66653222222 3455666666666665322111 12 46678899999999987 45555 44556789
Q ss_pred CccEEEEcCCCCCCCCCCC
Q 005367 646 RLKELEVRGCDSLEKLPLD 664 (700)
Q Consensus 646 ~L~~L~i~~C~~L~~lp~~ 664 (700)
+|++|++++| +++.+|..
T Consensus 495 ~L~~L~l~~n-~l~~~~~~ 512 (570)
T 2z63_A 495 SLQVLNMASN-QLKSVPDG 512 (570)
T ss_dssp TCCEEECCSS-CCSCCCTT
T ss_pred CCCEEeCCCC-cCCCCCHH
Confidence 9999999988 67777643
No 13
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=1.9e-23 Score=224.90 Aligned_cols=347 Identities=15% Similarity=0.106 Sum_probs=248.8
Q ss_pred cceEEEcCCCCCCCCccccccccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcc
Q 005367 307 EGFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNET 386 (700)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 386 (700)
-..+.+.++.+..+| .+..+++|+.|++++|.++.++ +..+++|++|++++|.+++.+ +..+++|++|++++| .
T Consensus 44 L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N-~ 117 (457)
T 3bz5_A 44 LTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTN-K 117 (457)
T ss_dssp CCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSS-C
T ss_pred CCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCC-c
Confidence 356777888888886 6888999999999999999986 889999999999999988863 788999999999999 5
Q ss_pred cccCCcccccccccceeccccCcccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCccc
Q 005367 387 LRQLPMGISKLVSLQLLDISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHE 466 (700)
Q Consensus 387 ~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 466 (700)
++.+| ++.+++|++|++++|+++.++ ++.+++|+.|++++|..++.++ ++.+++|+.|++++|.+...
T Consensus 118 l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l----- 185 (457)
T 3bz5_A 118 LTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITEL----- 185 (457)
T ss_dssp CSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCC-----
T ss_pred CCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCcccee-----
Confidence 66665 888999999999999998874 7889999999999987666663 67889999999999887442
Q ss_pred chHHHHhcCCCcceEEEEEecchhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEeccccccceeec
Q 005367 467 NVAEELLGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGLKID 546 (700)
Q Consensus 467 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~ 546 (700)
+ +..+++|+.|++++|.+...+ ....++|+.|+++++.-. ..+ +..+++|+.|++++|. +..+++.
T Consensus 186 --~--l~~l~~L~~L~l~~N~l~~~~-----l~~l~~L~~L~Ls~N~l~-~ip---~~~l~~L~~L~l~~N~-l~~~~~~ 251 (457)
T 3bz5_A 186 --D--VSQNKLLNRLNCDTNNITKLD-----LNQNIQLTFLDCSSNKLT-EID---VTPLTQLTYFDCSVNP-LTELDVS 251 (457)
T ss_dssp --C--CTTCTTCCEEECCSSCCSCCC-----CTTCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSC-CSCCCCT
T ss_pred --c--cccCCCCCEEECcCCcCCeec-----cccCCCCCEEECcCCccc-ccC---ccccCCCCEEEeeCCc-CCCcCHH
Confidence 1 678899999999999887752 233468899999988633 333 6678899999998886 3333322
Q ss_pred ccccccccCCccccCCccEEeeecCcCcccccccccCCCCceEEeeeccccccccccccCCCCCCccCCCCCCCCcccee
Q 005367 547 YKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLTFLVFAPNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPFAKLQRL 626 (700)
Q Consensus 547 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 626 (700)
......... ....+|+.|++++|.....+| .+.+++|+.|++++|..+..++.. .+.+....+.++++|+.|
T Consensus 252 ~l~~L~~L~--l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~-----~~~L~~L~l~~~~~L~~L 323 (457)
T 3bz5_A 252 TLSKLTTLH--CIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQ-----AAGITELDLSQNPKLVYL 323 (457)
T ss_dssp TCTTCCEEE--CTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECT-----TCCCSCCCCTTCTTCCEE
T ss_pred HCCCCCEEe--ccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceeccC-----CCcceEechhhcccCCEE
Confidence 111000000 011245566666665555555 567899999999999877776542 122222356778899999
Q ss_pred eccCcccccccccCCCCCCCccEEEEcCCCCCCCCCCCCCCc--ceEeecchhhh--hcCccccccccccccccc
Q 005367 627 RLEGLGRLKSIYWKPLPLPRLKELEVRGCDSLEKLPLDSNGR--RILIRGHEDWW--RRLQWEDEATQNAFRLCF 697 (700)
Q Consensus 627 ~l~~c~~l~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~--~~~i~~~~~~~--~~l~~~~~~~~~~~~~~~ 697 (700)
+++++ .++.++ ...+++|+.|+++++ +++.+|...... .-.+.++++.. ..+.+..|...+.+|..+
T Consensus 324 ~L~~N-~l~~l~--l~~l~~L~~L~l~~N-~l~~l~~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 324 YLNNT-ELTELD--VSHNTKLKSLSCVNA-HIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp ECTTC-CCSCCC--CTTCTTCSEEECCSS-CCCBCTTGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTTC
T ss_pred ECCCC-cccccc--cccCCcCcEEECCCC-CCCCccccccccccCCcEEecceeeecCccccccCcEEEEcChhH
Confidence 99875 666664 556899999999775 555554222111 22333332221 345667777777777665
No 14
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=2e-23 Score=226.25 Aligned_cols=329 Identities=19% Similarity=0.151 Sum_probs=215.2
Q ss_pred ceEEEcCCCCCCCCccccccccceeeeeccccccCCC--CCCCCCceeEEEecCCCCc-ccccccccCCCcceEEEccCC
Q 005367 308 GFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLT-TIAGGFFQSMPCLTVLKMSGN 384 (700)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~L~~~ 384 (700)
..+...+.++..+|. +. +++++|++++|.++.++ .+..+++|++|++++|.+. .+++..|.++++|++|+|++|
T Consensus 13 ~~~~c~~~~l~~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 13 YNAICINRGLHQVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TEEECCSSCCSSCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred cccCcCCCCcccCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 345566778888876 33 78999999999988774 5888999999999999876 455666888999999999999
Q ss_pred cccccCCcccccccccceeccccCcccc-cchh--hhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccc
Q 005367 385 ETLRQLPMGISKLVSLQLLDISYTRVRE-LPEE--LKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISF 461 (700)
Q Consensus 385 ~~~~~lp~~~~~l~~L~~L~l~~~~l~~-lp~~--~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~ 461 (700)
......|..++++++|++|++++|++.. .+.. ++.+++|++|++++|......|...++++++|+.|++++|.+...
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 5444457788899999999999998884 4444 788999999999988654444555578889999999998876432
Q ss_pred cCcccc----------------------------hHHHHhcCCCcceEEEEEecchhhH-hhhhcccccccchhhhcccc
Q 005367 462 YSWHEN----------------------------VAEELLGLKYLEVLEITFRRFEAYQ-TFLSSQKLRSCTQALFLHEF 512 (700)
Q Consensus 462 ~~~~~~----------------------------~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~ 512 (700)
....-. ....+..+++|++|++++|.+.... ..........+|+.|.+.++
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence 111000 0011223456777777776654321 11111111235566666554
Q ss_pred CCCce---------eeecCcCc--cccccEEEEeccccccceeecccccccccCCccccCCccEEeeecCcCccccc-cc
Q 005367 513 DREES---------IDVAGLAD--LEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLT-FL 580 (700)
Q Consensus 513 ~~~~~---------~~~~~l~~--l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~l 580 (700)
..... .....+.. .++|+.|++++|... ...+..+. .+++|++|++++|..-...+ .+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~---------~l~~L~~L~Ls~n~l~~~~~~~~ 319 (455)
T 3v47_A 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFS---------HFTDLEQLTLAQNEINKIDDNAF 319 (455)
T ss_dssp TTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCC-EECTTTTT---------TCTTCCEEECTTSCCCEECTTTT
T ss_pred cccccccchhhhccCcccccccccccCceEEEecCcccc-ccchhhcc---------cCCCCCEEECCCCcccccChhHh
Confidence 32111 00011111 257888888777633 23333333 57888888888874333323 57
Q ss_pred ccCCCCceEEeeeccccccccccccCCCCCCccCCCCCCCCccceeeccCccccccc-ccCCCCCCCccEEEEcCCCCCC
Q 005367 581 VFAPNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPFAKLQRLRLEGLGRLKSI-YWKPLPLPRLKELEVRGCDSLE 659 (700)
Q Consensus 581 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~i~~C~~L~ 659 (700)
+.+++|+.|+++++ .++.+.. ..+..+++|++|+++++ .++.+ +.....+++|++|++++| +++
T Consensus 320 ~~l~~L~~L~Ls~N-~l~~~~~------------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 384 (455)
T 3v47_A 320 WGLTHLLKLNLSQN-FLGSIDS------------RMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLK 384 (455)
T ss_dssp TTCTTCCEEECCSS-CCCEECG------------GGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCS
T ss_pred cCcccCCEEECCCC-ccCCcCh------------hHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccc
Confidence 77888888888886 3444322 35567788888888876 45554 444556788888888876 677
Q ss_pred CCCCC
Q 005367 660 KLPLD 664 (700)
Q Consensus 660 ~lp~~ 664 (700)
.+|..
T Consensus 385 ~~~~~ 389 (455)
T 3v47_A 385 SVPDG 389 (455)
T ss_dssp CCCTT
T ss_pred cCCHh
Confidence 77753
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=4.1e-23 Score=224.10 Aligned_cols=302 Identities=17% Similarity=0.227 Sum_probs=171.1
Q ss_pred ceEEEcCCCCCCCCccccccccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCccc
Q 005367 308 GFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETL 387 (700)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 387 (700)
..+.+.+..+..+| .+..+++|+.|++++|.++.++.+..+++|++|++++|.+...++ +..+++|++|++++| .+
T Consensus 49 ~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n-~l 124 (466)
T 1o6v_A 49 TTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN-QI 124 (466)
T ss_dssp CEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CC
T ss_pred cEEecCCCCCccCc-chhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCC-CC
Confidence 45666777777775 477788888888888888888778888888888888888877766 778888888888888 56
Q ss_pred ccCCcccccccccceeccccCcccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccc
Q 005367 388 RQLPMGISKLVSLQLLDISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHEN 467 (700)
Q Consensus 388 ~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 467 (700)
+.++. ++.+++|++|++++|.+..++ .+..+++|+.|+++++ ....+. ++++++|+.|++++|.+...
T Consensus 125 ~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~~--~~~~~~--~~~l~~L~~L~l~~n~l~~~------ 192 (466)
T 1o6v_A 125 TDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQ--VTDLKP--LANLTTLERLDISSNKVSDI------ 192 (466)
T ss_dssp CCCGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEES--CCCCGG--GTTCTTCCEEECCSSCCCCC------
T ss_pred CCChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCCc--ccCchh--hccCCCCCEEECcCCcCCCC------
Confidence 66654 778888888888888877665 3666666666666532 223332 55666666666666654321
Q ss_pred hHHHHhcCCCcceEEEEEecchhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEeccccccceeecc
Q 005367 468 VAEELLGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGLKIDY 547 (700)
Q Consensus 468 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~ 547 (700)
..+..+++|++|++++|.+.....+ ...++|+.|+++++... .. ..+..+++|+.|++++|.... ..+
T Consensus 193 --~~l~~l~~L~~L~l~~n~l~~~~~~----~~l~~L~~L~l~~n~l~-~~--~~l~~l~~L~~L~l~~n~l~~-~~~-- 260 (466)
T 1o6v_A 193 --SVLAKLTNLESLIATNNQISDITPL----GILTNLDELSLNGNQLK-DI--GTLASLTNLTDLDLANNQISN-LAP-- 260 (466)
T ss_dssp --GGGGGCTTCSEEECCSSCCCCCGGG----GGCTTCCEEECCSSCCC-CC--GGGGGCTTCSEEECCSSCCCC-CGG--
T ss_pred --hhhccCCCCCEEEecCCcccccccc----cccCCCCEEECCCCCcc-cc--hhhhcCCCCCEEECCCCcccc-chh--
Confidence 1244555555555555554433321 11234444544444311 11 123334444444444433111 000
Q ss_pred ccc-------------ccccCCccccCCccEEeeecCcCcccccccccCCCCceEEeeeccccccccccccCCCCCCccC
Q 005367 548 KDM-------------VQKSRQPYVFRSLEEVTVRFCRKLKHLTFLVFAPNLKSISVCLCDDMEEIISAGEFDDIPEMTG 614 (700)
Q Consensus 548 ~~~-------------~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 614 (700)
... ....++...+++|++|++++| .+..++.++.+++|+.|++++|. +++..
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~~------------- 325 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFNN-ISDIS------------- 325 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSSC-CSCCG-------------
T ss_pred hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCCc-CCCch-------------
Confidence 000 000000123555666666554 34444445556666666665542 22221
Q ss_pred CCCCCCCccceeeccCcccccccccCCCCCCCccEEEEcCC
Q 005367 615 IISSPFAKLQRLRLEGLGRLKSIYWKPLPLPRLKELEVRGC 655 (700)
Q Consensus 615 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~C 655 (700)
.+..+++|+.|++++| .++.++ ....+++|++|++++|
T Consensus 326 -~~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 326 -PVSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHN 363 (466)
T ss_dssp -GGGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSS
T ss_pred -hhccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCC
Confidence 1345566666666654 344432 2334566666666665
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=2e-23 Score=234.85 Aligned_cols=124 Identities=21% Similarity=0.304 Sum_probs=76.4
Q ss_pred ceEEEcCCCCCCCCc-cccccccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCC
Q 005367 308 GFLVYAGSGLTEAPA-DVRGWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGN 384 (700)
Q Consensus 308 ~~~~~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~ 384 (700)
..+.+.++.+..++. .+.++++|++|++++|.++.++ .|..+++|++|++++|.++...+..|.++++|++|++++|
T Consensus 35 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 114 (606)
T 3vq2_A 35 KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS
T ss_pred CEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCC
Confidence 445555655555543 5666666666666666666653 3566666666666666666665555666666666666666
Q ss_pred cccccCC-cccccccccceeccccCccc--ccchhhhcCCCCCEEeccccc
Q 005367 385 ETLRQLP-MGISKLVSLQLLDISYTRVR--ELPEELKALVNLRCLNLDWAG 432 (700)
Q Consensus 385 ~~~~~lp-~~~~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~ 432 (700)
.+..++ ..++.+++|++|++++|.+. .+|..++++++|++|++++|.
T Consensus 115 -~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 115 -KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp -CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred -ccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 333333 45666666666666666665 356666666666666666653
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=6.7e-24 Score=238.78 Aligned_cols=295 Identities=14% Similarity=0.147 Sum_probs=202.4
Q ss_pred CC-CCCCCCceeEEEecCCCCccc-----------------cccccc--CCCcceEEEccCCcccccCCcccccccccce
Q 005367 343 LP-TIPTCPHLLTLFLNRNPLTTI-----------------AGGFFQ--SMPCLTVLKMSGNETLRQLPMGISKLVSLQL 402 (700)
Q Consensus 343 l~-~~~~~~~L~~L~l~~~~~~~~-----------------~~~~~~--~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~ 402 (700)
+| .+..+++|++|++++|.+++. .|..+. ++++|++|++++|...+.+|..++++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 44 477899999999999999883 444477 9999999999999778889999999999999
Q ss_pred eccccCc-cc--ccchhhhcC------CCCCEEecccccCccccch--hhhcCCCccceeeccccCcccccCcccchHHH
Q 005367 403 LDISYTR-VR--ELPEELKAL------VNLRCLNLDWAGELVKVPQ--QLLSNFSRLRVLRMFATGLISFYSWHENVAEE 471 (700)
Q Consensus 403 L~l~~~~-l~--~lp~~~~~l------~~L~~L~l~~~~~~~~~p~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 471 (700)
|++++|+ ++ .+|..++.+ ++|++|++++|... .+|. . ++++++|+.|++++|.+.. ..+ .
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~-l~~l~~L~~L~L~~N~l~g------~ip-~ 348 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS-LQKMKKLGMLECLYNQLEG------KLP-A 348 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH-HTTCTTCCEEECCSCCCEE------ECC-C
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh-hccCCCCCEEeCcCCcCcc------chh-h
Confidence 9999998 87 489888876 99999999998654 8887 5 8999999999999988742 234 6
Q ss_pred HhcCCCcceEEEEEecchhhHhhhhccccccc-chhhhccccCCCceeeecCcCc--cccccEEEEeccccccceeeccc
Q 005367 472 LLGLKYLEVLEITFRRFEAYQTFLSSQKLRSC-TQALFLHEFDREESIDVAGLAD--LEQLNTLIFYSCDWIKGLKIDYK 548 (700)
Q Consensus 472 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~l~~--l~~L~~L~l~~~~~l~~~~~~~~ 548 (700)
+..+++|+.|++++|.+..++.. ....++ |+.|+++++... ..+ ..+.. +++|+.|++++|...... +..+
T Consensus 349 ~~~l~~L~~L~L~~N~l~~lp~~---l~~l~~~L~~L~Ls~N~l~-~lp-~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~l 422 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQITEIPAN---FCGFTEQVENLSFAHNKLK-YIP-NIFDAKSVSVMSAIDFSYNEIGSVD-GKNF 422 (636)
T ss_dssp CEEEEEESEEECCSSEEEECCTT---SEEECTTCCEEECCSSCCS-SCC-SCCCTTCSSCEEEEECCSSCTTTTT-TCSS
T ss_pred hCCCCCCCEEECCCCccccccHh---hhhhcccCcEEEccCCcCc-ccc-hhhhhcccCccCEEECcCCcCCCcc-hhhh
Confidence 78889999999999988755433 222345 999999998743 333 23333 458999999888643321 1111
Q ss_pred ccccccCCccccCCccEEeeecCcCcccccc--cccCCCCceEEeeeccccccccccccCCCCCCccCCCCCCCCcccee
Q 005367 549 DMVQKSRQPYVFRSLEEVTVRFCRKLKHLTF--LVFAPNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPFAKLQRL 626 (700)
Q Consensus 549 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 626 (700)
. ........+++|++|++++| .+..+|. +..+++|+.|+++++. ++.+......... .....+++|+.|
T Consensus 423 ~--~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~-----~~~~~l~~L~~L 493 (636)
T 4eco_A 423 D--PLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDEN-----ENFKNTYLLTSI 493 (636)
T ss_dssp C--TTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETT-----EECTTGGGCCEE
T ss_pred c--ccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCC-CCCcCHHHhcccc-----ccccccCCccEE
Confidence 1 00011124568888888887 4445553 4457888888888853 4443221000000 011223366777
Q ss_pred eccCcccccccccCCC--CCCCccEEEEcCCCCCCCCCC
Q 005367 627 RLEGLGRLKSIYWKPL--PLPRLKELEVRGCDSLEKLPL 663 (700)
Q Consensus 627 ~l~~c~~l~~l~~~~~--~~~~L~~L~i~~C~~L~~lp~ 663 (700)
+++++ .++.++.... .+++|++|++++| +++.+|.
T Consensus 494 ~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~ 530 (636)
T 4eco_A 494 DLRFN-KLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPT 530 (636)
T ss_dssp ECCSS-CCCBCCGGGSTTTCTTCCEEECCSS-CCSSCCC
T ss_pred ECcCC-cCCccChhhhhccCCCcCEEECCCC-CCCCcCh
Confidence 77664 4556655544 5667777777665 4555553
No 18
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=4.4e-23 Score=232.08 Aligned_cols=326 Identities=16% Similarity=0.086 Sum_probs=210.0
Q ss_pred ceEEEcCCCCCCCCccccccccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCc
Q 005367 308 GFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNE 385 (700)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 385 (700)
..+...+.++..+|..+. ..++.|++++|.++.++ .|..+++|++|++++|.+..+.+..|.++++|++|+|++|.
T Consensus 15 ~~~~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp TEEECTTSCCSSCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred ceEECCCCCcccCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence 345567788889988776 58999999999999885 68999999999999999999888889999999999999995
Q ss_pred ccccCCcccccccccceeccccCccccc-chhhhcCCCCCEEecccccCccccc-hhhhcCCCccceeeccccCcccccC
Q 005367 386 TLRQLPMGISKLVSLQLLDISYTRVREL-PEELKALVNLRCLNLDWAGELVKVP-QQLLSNFSRLRVLRMFATGLISFYS 463 (700)
Q Consensus 386 ~~~~lp~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~~l~~L~~L~l~~~~~~~~~~ 463 (700)
.....|..++.+++|++|++++|++..+ +..++.+++|++|++++|.. ..++ +. +..+++|+.|++++|.+..
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l-~~~~~~~-~~~l~~L~~L~L~~n~l~~--- 167 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI-SSIKLPK-GFPTEKLKVLDFQNNAIHY--- 167 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCC-CCCCCCT-TCCCTTCCEEECCSSCCCE---
T ss_pred ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcc-cccCccc-ccCCcccCEEEcccCcccc---
Confidence 5555677899999999999999999976 56688999999999999864 4432 22 4569999999999987743
Q ss_pred cccchHHHHhcCCCcc--eEEEEEecchhhHhhhhccc------------------------------------------
Q 005367 464 WHENVAEELLGLKYLE--VLEITFRRFEAYQTFLSSQK------------------------------------------ 499 (700)
Q Consensus 464 ~~~~~~~~l~~l~~L~--~L~l~~~~~~~~~~~~~~~~------------------------------------------ 499 (700)
..+..++.+++|+ .|++++|.+...........
T Consensus 168 ---~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~ 244 (606)
T 3t6q_A 168 ---LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244 (606)
T ss_dssp ---ECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCC
T ss_pred ---cChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccC
Confidence 2466788888888 67777776644322111000
Q ss_pred -------ccccchhhhccccCCCceeeecCcCccccccEEEEeccccccceeecccccccccCCccccCCccEEeeecCc
Q 005367 500 -------LRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEVTVRFCR 572 (700)
Q Consensus 500 -------~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 572 (700)
....|+.|++.++. +.......+..+++|++|++++|. +..++. .+ ..+++|++|++++|.
T Consensus 245 ~~~~~~l~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~-~l---------~~l~~L~~L~l~~n~ 312 (606)
T 3t6q_A 245 PAVFEGLCEMSVESINLQKHY-FFNISSNTFHCFSGLQELDLTATH-LSELPS-GL---------VGLSTLKKLVLSANK 312 (606)
T ss_dssp GGGGGGGGGSEEEEEECTTCC-CSSCCTTTTTTCTTCSEEECTTSC-CSCCCS-SC---------CSCTTCCEEECTTCC
T ss_pred hhHhchhhcCceeEEEeecCc-cCccCHHHhccccCCCEEeccCCc-cCCCCh-hh---------cccccCCEEECccCC
Confidence 00034444444443 222222345667777777777765 322222 11 235666666666653
Q ss_pred Cccccc-ccccCCCCceEEeeeccccccccccc--cC----------CCCCCcc--CCCCCCCCccceeeccCccccccc
Q 005367 573 KLKHLT-FLVFAPNLKSISVCLCDDMEEIISAG--EF----------DDIPEMT--GIISSPFAKLQRLRLEGLGRLKSI 637 (700)
Q Consensus 573 ~l~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~--~~----------~~~~~~~--~~~~~~~~~L~~L~l~~c~~l~~l 637 (700)
.....+ .++.+++|+.|+++++.....+.... .. ..+.... ...+..+++|++|++++|. +..+
T Consensus 313 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~ 391 (606)
T 3t6q_A 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSL 391 (606)
T ss_dssp CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEE
T ss_pred cCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcC
Confidence 222212 35556666666666553222221100 00 0000000 1245566777777777653 3333
Q ss_pred -ccCCCCCCCccEEEEcCCC
Q 005367 638 -YWKPLPLPRLKELEVRGCD 656 (700)
Q Consensus 638 -~~~~~~~~~L~~L~i~~C~ 656 (700)
+.....+++|++|++++|.
T Consensus 392 ~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 392 KTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp CTTTTTTCTTCSEEECTTCC
T ss_pred CHHHhcCCccCCeEECCCCc
Confidence 3333446777777776663
No 19
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=8.2e-24 Score=243.73 Aligned_cols=307 Identities=18% Similarity=0.150 Sum_probs=144.6
Q ss_pred ccccccceeeeeccccccCC-C-CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccccc-ccc
Q 005367 324 VRGWEMGRRLSLMKNSIKNL-P-TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKL-VSL 400 (700)
Q Consensus 324 ~~~~~~l~~l~l~~~~~~~l-~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l-~~L 400 (700)
+..+++|+.|++++|.+... | .+..+++|++|++++|.+.+..+.. .+++|++|++++|...+.+|..+..+ ++|
T Consensus 219 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L 296 (768)
T 3rgz_A 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTL 296 (768)
T ss_dssp CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTC
T ss_pred cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcC
Confidence 44444444444444444321 1 3444444444444444444333321 44444444444443222444444432 555
Q ss_pred ceeccccCccc-ccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHhcCC-Cc
Q 005367 401 QLLDISYTRVR-ELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLK-YL 478 (700)
Q Consensus 401 ~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~-~L 478 (700)
++|++++|++. .+|..++.+++|+.|++++|...+.+|...++++++|+.|++++|.+.. ..+..+..++ +|
T Consensus 297 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~------~~p~~l~~l~~~L 370 (768)
T 3rgz_A 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG------ELPESLTNLSASL 370 (768)
T ss_dssp SEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEE------CCCTTHHHHTTTC
T ss_pred CEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCc------cccHHHHhhhcCC
Confidence 55555555554 4444555555555555555543334444334555555555555544321 1222333343 45
Q ss_pred ceEEEEEecchhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEeccccccceeecccccccccCCcc
Q 005367 479 EVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPY 558 (700)
Q Consensus 479 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 558 (700)
+.|+++.|.+.+...-.......++|+.|++.+|...... ...+..+++|+.|++++|.... ..+..+.
T Consensus 371 ~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~--------- 439 (768)
T 3rgz_A 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI-PPTLSNCSELVSLHLSFNYLSG-TIPSSLG--------- 439 (768)
T ss_dssp SEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEEC-CGGGGGCTTCCEEECCSSEEES-CCCGGGG---------
T ss_pred cEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccccc-CHHHhcCCCCCEEECcCCcccC-cccHHHh---------
Confidence 5555555444321100000001234555555555422121 1345556666666666654222 1222222
Q ss_pred ccCCccEEeeecCcCccccc-ccccCCCCceEEeeeccccccccccccCCCCCCccCCCCCCCCccceeeccCccccccc
Q 005367 559 VFRSLEEVTVRFCRKLKHLT-FLVFAPNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPFAKLQRLRLEGLGRLKSI 637 (700)
Q Consensus 559 ~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l 637 (700)
.+++|+.|++++|.....+| .++.+++|+.|++++|.....+ | ..+..+++|++|++++|.-...+
T Consensus 440 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~---------p----~~l~~l~~L~~L~L~~N~l~~~~ 506 (768)
T 3rgz_A 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI---------P----SGLSNCTNLNWISLSNNRLTGEI 506 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC---------C----GGGGGCTTCCEEECCSSCCCSCC
T ss_pred cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcC---------C----HHHhcCCCCCEEEccCCccCCcC
Confidence 35666666666664332333 3556666666666665322111 1 24556667777777766444455
Q ss_pred ccCCCCCCCccEEEEcCCCCCCCCC
Q 005367 638 YWKPLPLPRLKELEVRGCDSLEKLP 662 (700)
Q Consensus 638 ~~~~~~~~~L~~L~i~~C~~L~~lp 662 (700)
+.....+++|++|++++|.-...+|
T Consensus 507 p~~~~~l~~L~~L~L~~N~l~~~~p 531 (768)
T 3rgz_A 507 PKWIGRLENLAILKLSNNSFSGNIP 531 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCEEECC
T ss_pred ChHHhcCCCCCEEECCCCcccCcCC
Confidence 5555556777777777664333444
No 20
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=5.4e-23 Score=217.93 Aligned_cols=300 Identities=15% Similarity=0.177 Sum_probs=226.1
Q ss_pred ccccceeeeeccccccCCCC--CCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccC-Ccccccccccce
Q 005367 326 GWEMGRRLSLMKNSIKNLPT--IPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQL-PMGISKLVSLQL 402 (700)
Q Consensus 326 ~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~ 402 (700)
.+++++.+++.++.++.+|. +..+++|++|++++|.++..++..+..+++|++|++++|. ++.+ |..++.+++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCE
Confidence 45789999999999999885 6788999999999999988888778999999999999994 5554 556888999999
Q ss_pred eccccCcccccchh-hhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcceE
Q 005367 403 LDISYTRVRELPEE-LKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVL 481 (700)
Q Consensus 403 L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L 481 (700)
|++++|++..+|.. ++.+++|++|++++|.. ..++...++++++|+.|++++|.+... .+..+++|+.|
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~---------~~~~l~~L~~L 191 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHV---------DLSLIPSLFHA 191 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTSSCTTCCEEECCSSCCSBC---------CGGGCTTCSEE
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCcc-CccChhhccCCCCCCEEECCCCcCCcc---------cccccccccee
Confidence 99999999988877 48899999999998854 455554488899999999998887442 25678899999
Q ss_pred EEEEecchhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEeccccccceeecccccccccCCccccC
Q 005367 482 EITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFR 561 (700)
Q Consensus 482 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 561 (700)
++++|.+..+. ....|+.|+++++.. ...+. ...++|+.|++++|.... . .++ ..++
T Consensus 192 ~l~~n~l~~~~-------~~~~L~~L~l~~n~l-~~~~~---~~~~~L~~L~l~~n~l~~-~--~~l---------~~l~ 248 (390)
T 3o6n_A 192 NVSYNLLSTLA-------IPIAVEELDASHNSI-NVVRG---PVNVELTILKLQHNNLTD-T--AWL---------LNYP 248 (390)
T ss_dssp ECCSSCCSEEE-------CCSSCSEEECCSSCC-CEEEC---CCCSSCCEEECCSSCCCC-C--GGG---------GGCT
T ss_pred ecccccccccC-------CCCcceEEECCCCee-eeccc---cccccccEEECCCCCCcc-c--HHH---------cCCC
Confidence 99888765432 334788888888753 22221 224789999998876332 1 222 3588
Q ss_pred CccEEeeecCcCccc-ccccccCCCCceEEeeeccccccccccccCCCCCCccCCCCCCCCccceeeccCcccccccccC
Q 005367 562 SLEEVTVRFCRKLKH-LTFLVFAPNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPFAKLQRLRLEGLGRLKSIYWK 640 (700)
Q Consensus 562 ~L~~L~l~~~~~l~~-l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~ 640 (700)
+|++|++++|..-.. ...++.+++|+.|+++++ .++.+. .....+++|++|++++| .++.++..
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-------------~~~~~l~~L~~L~L~~n-~l~~~~~~ 313 (390)
T 3o6n_A 249 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALN-------------LYGQPIPTLKVLDLSHN-HLLHVERN 313 (390)
T ss_dssp TCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEE-------------CSSSCCTTCCEEECCSS-CCCCCGGG
T ss_pred CccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccC-------------cccCCCCCCCEEECCCC-cceecCcc
Confidence 999999999843332 235788999999999986 444432 24467889999999986 67777766
Q ss_pred CCCCCCccEEEEcCCCCCCCCCCCCCCc--ceEeecc
Q 005367 641 PLPLPRLKELEVRGCDSLEKLPLDSNGR--RILIRGH 675 (700)
Q Consensus 641 ~~~~~~L~~L~i~~C~~L~~lp~~~~~~--~~~i~~~ 675 (700)
...+++|++|++++| +++.+|...... .+.+.++
T Consensus 314 ~~~l~~L~~L~L~~N-~i~~~~~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 314 QPQFDRLENLYLDHN-SIVTLKLSTHHTLKNLTLSHN 349 (390)
T ss_dssp HHHHTTCSEEECCSS-CCCCCCCCTTCCCSEEECCSS
T ss_pred ccccCcCCEEECCCC-ccceeCchhhccCCEEEcCCC
Confidence 666899999999988 478877544333 6666643
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=7.5e-23 Score=230.23 Aligned_cols=44 Identities=27% Similarity=0.335 Sum_probs=25.1
Q ss_pred CCCCCCccceeeccCcccccc--cc--cCCCCCCCccEEEEcCCCCCCCC
Q 005367 616 ISSPFAKLQRLRLEGLGRLKS--IY--WKPLPLPRLKELEVRGCDSLEKL 661 (700)
Q Consensus 616 ~~~~~~~L~~L~l~~c~~l~~--l~--~~~~~~~~L~~L~i~~C~~L~~l 661 (700)
.+..+++|++|++++|. +.. ++ .....+++|++|++++| +++.+
T Consensus 444 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~ 491 (606)
T 3t6q_A 444 LFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFC-DLSSI 491 (606)
T ss_dssp TTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTS-CCCEE
T ss_pred HHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCC-ccCcc
Confidence 45566777777777653 222 11 12334677777777777 45444
No 22
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=4.9e-23 Score=218.30 Aligned_cols=298 Identities=18% Similarity=0.213 Sum_probs=238.6
Q ss_pred cceEEEcCCCCCCCCcc-ccccccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccC
Q 005367 307 EGFLVYAGSGLTEAPAD-VRGWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSG 383 (700)
Q Consensus 307 ~~~~~~~~~~~~~~~~~-~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 383 (700)
-+.+.+.++.+..+|.. +..+++|+.|++++|.++.++ .+..+++|++|++++|.++..++..+..+++|++|++++
T Consensus 47 l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 126 (390)
T 3o6n_A 47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126 (390)
T ss_dssp CSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCC
Confidence 45677888888888875 578899999999999999886 689999999999999999999998899999999999999
Q ss_pred CcccccCCcc-cccccccceeccccCcccccch-hhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccc
Q 005367 384 NETLRQLPMG-ISKLVSLQLLDISYTRVRELPE-ELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISF 461 (700)
Q Consensus 384 ~~~~~~lp~~-~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~ 461 (700)
| .++.+|.. ++.+++|++|++++|++..++. .+..+++|+.|++++|.. ...+ ++.+++|+.|++++|.+..
T Consensus 127 n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~---~~~l~~L~~L~l~~n~l~~- 200 (390)
T 3o6n_A 127 N-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD---LSLIPSLFHANVSYNLLST- 200 (390)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC-SBCC---GGGCTTCSEEECCSSCCSE-
T ss_pred C-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcC-Cccc---cccccccceeecccccccc-
Confidence 9 67788766 5889999999999999996654 588999999999999854 4443 5578999999999887643
Q ss_pred cCcccchHHHHhcCCCcceEEEEEecchhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEecccccc
Q 005367 462 YSWHENVAEELLGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIK 541 (700)
Q Consensus 462 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~ 541 (700)
+...++|++|++++|.+..++. ....+|+.|+++++.... . ..+..+++|++|++++|. +.
T Consensus 201 ----------~~~~~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~n~l~~-~--~~l~~l~~L~~L~Ls~n~-l~ 261 (390)
T 3o6n_A 201 ----------LAIPIAVEELDASHNSINVVRG-----PVNVELTILKLQHNNLTD-T--AWLLNYPGLVEVDLSYNE-LE 261 (390)
T ss_dssp ----------EECCSSCSEEECCSSCCCEEEC-----CCCSSCCEEECCSSCCCC-C--GGGGGCTTCSEEECCSSC-CC
T ss_pred ----------cCCCCcceEEECCCCeeeeccc-----cccccccEEECCCCCCcc-c--HHHcCCCCccEEECCCCc-CC
Confidence 2345689999999998876532 234589999999986433 2 457778999999999986 44
Q ss_pred ceeecccccccccCCccccCCccEEeeecCcCccccc-ccccCCCCceEEeeeccccccccccccCCCCCCccCCCCCCC
Q 005367 542 GLKIDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLT-FLVFAPNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPF 620 (700)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 620 (700)
...+..+. .+++|++|++++| .+..++ ....+++|+.|++++| .++.+. ..+..+
T Consensus 262 ~~~~~~~~---------~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~-------------~~~~~l 317 (390)
T 3o6n_A 262 KIMYHPFV---------KMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVE-------------RNQPQF 317 (390)
T ss_dssp EEESGGGT---------TCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCG-------------GGHHHH
T ss_pred CcChhHcc---------ccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceecC-------------cccccc
Confidence 44444443 5899999999998 555555 3567999999999997 444432 245678
Q ss_pred CccceeeccCcccccccccCCCCCCCccEEEEcCCC
Q 005367 621 AKLQRLRLEGLGRLKSIYWKPLPLPRLKELEVRGCD 656 (700)
Q Consensus 621 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~C~ 656 (700)
++|++|+++++ .++.++ ...+++|++|++++++
T Consensus 318 ~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 318 DRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp TTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred CcCCEEECCCC-ccceeC--chhhccCCEEEcCCCC
Confidence 99999999986 566665 4568999999999873
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=3e-23 Score=237.46 Aligned_cols=291 Identities=15% Similarity=0.123 Sum_probs=200.8
Q ss_pred CC-CCCCCCceeEEEecCCCCcc------------------ccccccc--CCCcceEEEccCCcccccCCcccccccccc
Q 005367 343 LP-TIPTCPHLLTLFLNRNPLTT------------------IAGGFFQ--SMPCLTVLKMSGNETLRQLPMGISKLVSLQ 401 (700)
Q Consensus 343 l~-~~~~~~~L~~L~l~~~~~~~------------------~~~~~~~--~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~ 401 (700)
+| .+..+++|++|+|++|.+++ +++. +. ++++|++|+|++|...+.+|..++.+++|+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~-l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE-LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChh-hhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 44 46788999999999999888 4444 55 899999999999977888999999999999
Q ss_pred eeccccCc-ccc--cchhhhcCC-------CCCEEecccccCccccch-hhhcCCCccceeeccccCcccccCcccchHH
Q 005367 402 LLDISYTR-VRE--LPEELKALV-------NLRCLNLDWAGELVKVPQ-QLLSNFSRLRVLRMFATGLISFYSWHENVAE 470 (700)
Q Consensus 402 ~L~l~~~~-l~~--lp~~~~~l~-------~L~~L~l~~~~~~~~~p~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 470 (700)
+|++++|+ ++. +|..++.++ +|+.|++++|... .+|. ..++++++|+.|++++|.+.. .+
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~-------lp- 589 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRH-------LE- 589 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCB-------CC-
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCccc-------ch-
Confidence 99999997 874 888777766 9999999998654 8887 238899999999999988742 23
Q ss_pred HHhcCCCcceEEEEEecchhhHhhhhccccccc-chhhhccccCCCceeeecCcCcc--ccccEEEEeccccccceeecc
Q 005367 471 ELLGLKYLEVLEITFRRFEAYQTFLSSQKLRSC-TQALFLHEFDREESIDVAGLADL--EQLNTLIFYSCDWIKGLKIDY 547 (700)
Q Consensus 471 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~l~~~~~~~ 547 (700)
.++.+++|+.|++++|.+..++.. ....++ |+.|+++++... ..+ ..+..+ ++|+.|++++|...... +..
T Consensus 590 ~~~~L~~L~~L~Ls~N~l~~lp~~---l~~l~~~L~~L~Ls~N~L~-~lp-~~~~~~~~~~L~~L~Ls~N~l~g~i-p~l 663 (876)
T 4ecn_A 590 AFGTNVKLTDLKLDYNQIEEIPED---FCAFTDQVEGLGFSHNKLK-YIP-NIFNAKSVYVMGSVDFSYNKIGSEG-RNI 663 (876)
T ss_dssp CCCTTSEESEEECCSSCCSCCCTT---SCEECTTCCEEECCSSCCC-SCC-SCCCTTCSSCEEEEECCSSCTTTTS-SSC
T ss_pred hhcCCCcceEEECcCCccccchHH---HhhccccCCEEECcCCCCC-cCc-hhhhccccCCCCEEECcCCcCCCcc-ccc
Confidence 678899999999999988755432 222345 999999988743 333 233333 45999999888643311 111
Q ss_pred cccccccCCccccCCccEEeeecCcCcccccc--cccCCCCceEEeeeccccccccccccCCCCCCccCCCCCCCCccce
Q 005367 548 KDMVQKSRQPYVFRSLEEVTVRFCRKLKHLTF--LVFAPNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPFAKLQR 625 (700)
Q Consensus 548 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 625 (700)
.. ......+++|+.|++++|. +..+|. +..+++|+.|+|+++ .++.+......... ....++++|+.
T Consensus 664 ~~----~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~-----~~l~nl~~L~~ 732 (876)
T 4ecn_A 664 SC----SMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKD-----GNYKNTYLLTT 732 (876)
T ss_dssp SS----CTTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTT-----SCCTTGGGCCE
T ss_pred hh----hhccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCC-cCCccChHHhcccc-----ccccccCCccE
Confidence 00 0011234588888888874 445553 347888888888885 34443221110000 01234457777
Q ss_pred eeccCcccccccccCCC--CCCCccEEEEcCCCCCCCCC
Q 005367 626 LRLEGLGRLKSIYWKPL--PLPRLKELEVRGCDSLEKLP 662 (700)
Q Consensus 626 L~l~~c~~l~~l~~~~~--~~~~L~~L~i~~C~~L~~lp 662 (700)
|+|++| .++.++.... .+++|+.|++++| +++.+|
T Consensus 733 L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp 769 (876)
T 4ecn_A 733 IDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFP 769 (876)
T ss_dssp EECCSS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSCC
T ss_pred EECCCC-CCccchHHhhhccCCCcCEEEeCCC-CCCccc
Confidence 777775 5556665554 6777777777766 555565
No 24
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=1.8e-23 Score=240.85 Aligned_cols=298 Identities=20% Similarity=0.147 Sum_probs=175.0
Q ss_pred ceEEEcCCCCC-CCCccccccccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccC-CCcceEEEccCCc
Q 005367 308 GFLVYAGSGLT-EAPADVRGWEMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQS-MPCLTVLKMSGNE 385 (700)
Q Consensus 308 ~~~~~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~L~~~~ 385 (700)
..+.+.++.+. .+|..+..+++|+.|++++|.+........+++|++|++++|.+++..+..+.. +++|++|++++|.
T Consensus 226 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~ 305 (768)
T 3rgz_A 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH 305 (768)
T ss_dssp CEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE
T ss_pred CEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc
Confidence 34556666655 346677778888888888887764433337777888888887776444444444 4777888888775
Q ss_pred ccccCCcccccccccceeccccCccc-ccchh-hhcCCCCCEEecccccCccccchhhhcCCC-ccceeeccccCccccc
Q 005367 386 TLRQLPMGISKLVSLQLLDISYTRVR-ELPEE-LKALVNLRCLNLDWAGELVKVPQQLLSNFS-RLRVLRMFATGLISFY 462 (700)
Q Consensus 386 ~~~~lp~~~~~l~~L~~L~l~~~~l~-~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~-~L~~L~l~~~~~~~~~ 462 (700)
..+.+|..++.+++|++|++++|++. .+|.. +..+++|++|++++|...+.+|.. +.+++ +|+.|++++|.+....
T Consensus 306 l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~~L~~L~Ls~N~l~~~~ 384 (768)
T 3rgz_A 306 FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES-LTNLSASLLTLDLSSNNFSGPI 384 (768)
T ss_dssp EEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT-HHHHTTTCSEEECCSSEEEEEC
T ss_pred CCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH-HHhhhcCCcEEEccCCCcCCCc
Confidence 44566777777777777777777776 67765 777777777777777655456655 44554 6666666666542110
Q ss_pred C--------------------cccchHHHHhcCCCcceEEEEEecchhhHhhhhcccccccchhhhccccCCCceeeecC
Q 005367 463 S--------------------WHENVAEELLGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAG 522 (700)
Q Consensus 463 ~--------------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 522 (700)
. .....+..+..+++|+.|++++|.+.+... ......++|+.|++.++......+ ..
T Consensus 385 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~p-~~ 461 (768)
T 3rgz_A 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP--SSLGSLSKLRDLKLWLNMLEGEIP-QE 461 (768)
T ss_dssp CTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC--GGGGGCTTCCEEECCSSCCCSCCC-GG
T ss_pred ChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCccc--HHHhcCCCCCEEECCCCcccCcCC-HH
Confidence 0 001233445556666666666655542110 111122356666666654322222 34
Q ss_pred cCccccccEEEEeccccccceeecccccccccCCccccCCccEEeeecCcCccccc-ccccCCCCceEEeeecccccccc
Q 005367 523 LADLEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLT-FLVFAPNLKSISVCLCDDMEEII 601 (700)
Q Consensus 523 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~l~~~~ 601 (700)
+..+++|+.|++++|..... .+..+ ..+++|++|++++|.....+| +++.+++|++|++++|.....+
T Consensus 462 ~~~l~~L~~L~L~~N~l~~~-~p~~l---------~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~- 530 (768)
T 3rgz_A 462 LMYVKTLETLILDFNDLTGE-IPSGL---------SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI- 530 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSC-CCGGG---------GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEEC-
T ss_pred HcCCCCceEEEecCCcccCc-CCHHH---------hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcC-
Confidence 45556666666666553322 22222 246677777777765443333 4667777777777776432222
Q ss_pred ccccCCCCCCccCCCCCCCCccceeeccCcc
Q 005367 602 SAGEFDDIPEMTGIISSPFAKLQRLRLEGLG 632 (700)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 632 (700)
| ..+..+++|+.|++++|.
T Consensus 531 --------p----~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 531 --------P----AELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp --------C----GGGGGCTTCCEEECCSSE
T ss_pred --------C----HHHcCCCCCCEEECCCCc
Confidence 1 245566777777777654
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=1.6e-22 Score=219.49 Aligned_cols=304 Identities=17% Similarity=0.213 Sum_probs=206.1
Q ss_pred cceEEEcCCCCCCCCccccccccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcc
Q 005367 307 EGFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNET 386 (700)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 386 (700)
-..+.+.++.+..+|. +..+++|+.|++++|.+..++.+..+++|++|++++|.++..++ +..+++|++|++++| .
T Consensus 70 L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n-~ 145 (466)
T 1o6v_A 70 LTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN-T 145 (466)
T ss_dssp CCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEE-E
T ss_pred CCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCC-c
Confidence 3556677777777765 77778888888888888777777788888888888887776654 677888888888877 3
Q ss_pred cccCCc--------------------ccccccccceeccccCcccccchhhhcCCCCCEEecccccCccccchhhhcCCC
Q 005367 387 LRQLPM--------------------GISKLVSLQLLDISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFS 446 (700)
Q Consensus 387 ~~~lp~--------------------~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~ 446 (700)
+..++. .++.+++|++|++++|.+..++ .+..+++|++|++++|.. ...+. ++.++
T Consensus 146 l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l-~~~~~--~~~l~ 221 (466)
T 1o6v_A 146 ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQI-SDITP--LGILT 221 (466)
T ss_dssp ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCC-CCCGG--GGGCT
T ss_pred cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCcc-ccccc--ccccC
Confidence 444431 2445566666666666666553 356666666666666643 33332 45566
Q ss_pred ccceeeccccCcccccCcccchHHHHhcCCCcceEEEEEecchhhHhhhhcccccccchhhhccccCCCceeeecCcCcc
Q 005367 447 RLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADL 526 (700)
Q Consensus 447 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l 526 (700)
+|+.|++++|.+... ..+..+++|+.|++++|.+.....+ ...++|+.|+++++...... .+..+
T Consensus 222 ~L~~L~l~~n~l~~~--------~~l~~l~~L~~L~l~~n~l~~~~~~----~~l~~L~~L~l~~n~l~~~~---~~~~l 286 (466)
T 1o6v_A 222 NLDELSLNGNQLKDI--------GTLASLTNLTDLDLANNQISNLAPL----SGLTKLTELKLGANQISNIS---PLAGL 286 (466)
T ss_dssp TCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCCCGGG----TTCTTCSEEECCSSCCCCCG---GGTTC
T ss_pred CCCEEECCCCCcccc--------hhhhcCCCCCEEECCCCccccchhh----hcCCCCCEEECCCCccCccc---cccCC
Confidence 677777766655321 2356677777777777776655442 23346777777776532222 25567
Q ss_pred ccccEEEEeccccccceeecccccccccCCccccCCccEEeeecCcCcccccccccCCCCceEEeeeccccccccccccC
Q 005367 527 EQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLTFLVFAPNLKSISVCLCDDMEEIISAGEF 606 (700)
Q Consensus 527 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~ 606 (700)
++|+.|++++|.. ..+++ ...+++|++|++++| .+...+.++.+++|+.|++++| .++++
T Consensus 287 ~~L~~L~L~~n~l-~~~~~-----------~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~------ 346 (466)
T 1o6v_A 287 TALTNLELNENQL-EDISP-----------ISNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFYNN-KVSDV------ 346 (466)
T ss_dssp TTCSEEECCSSCC-SCCGG-----------GGGCTTCSEEECCSS-CCSCCGGGGGCTTCCEEECCSS-CCCCC------
T ss_pred CccCeEEcCCCcc-cCchh-----------hcCCCCCCEEECcCC-cCCCchhhccCccCCEeECCCC-ccCCc------
Confidence 7888888877753 32211 236899999999998 5666666899999999999997 44443
Q ss_pred CCCCCccCCCCCCCCccceeeccCcccccccccCCCCCCCccEEEEcCCCCCCCCCCC
Q 005367 607 DDIPEMTGIISSPFAKLQRLRLEGLGRLKSIYWKPLPLPRLKELEVRGCDSLEKLPLD 664 (700)
Q Consensus 607 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~ 664 (700)
..+..+++|+.|++++| .+..++. ...+++|++|++++| .++.+|..
T Consensus 347 --------~~l~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n-~~~~~p~~ 393 (466)
T 1o6v_A 347 --------SSLANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLNDQ-AWTNAPVN 393 (466)
T ss_dssp --------GGGTTCTTCCEEECCSS-CCCBCGG-GTTCTTCCEEECCCE-EEECCCBC
T ss_pred --------hhhccCCCCCEEeCCCC-ccCccch-hhcCCCCCEEeccCC-cccCCchh
Confidence 24668899999999987 4555443 567899999999988 46665543
No 26
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=5.5e-23 Score=221.31 Aligned_cols=315 Identities=17% Similarity=0.155 Sum_probs=234.8
Q ss_pred ccccccccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccccccccc
Q 005367 322 ADVRGWEMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQ 401 (700)
Q Consensus 322 ~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~ 401 (700)
..+..+++++.|++++|.++.+|.+..+++|++|++++|.+++++ +..+++|++|++++| .++.++ ++.+++|+
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~ 109 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSN-KLTNLD--VTPLTKLT 109 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSS-CCSCCC--CTTCTTCC
T ss_pred cChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCC-CCceee--cCCCCcCC
Confidence 466778999999999999999999999999999999999998874 789999999999999 566665 88999999
Q ss_pred eeccccCcccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcceE
Q 005367 402 LLDISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVL 481 (700)
Q Consensus 402 ~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L 481 (700)
+|++++|+++.+| ++.+++|++|++++|.. ..++ ++++++|+.|++++|..... . .+..+++|+.|
T Consensus 110 ~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l-~~l~---l~~l~~L~~L~l~~n~~~~~------~--~~~~l~~L~~L 175 (457)
T 3bz5_A 110 YLNCDTNKLTKLD--VSQNPLLTYLNCARNTL-TEID---VSHNTQLTELDCHLNKKITK------L--DVTPQTQLTTL 175 (457)
T ss_dssp EEECCSSCCSCCC--CTTCTTCCEEECTTSCC-SCCC---CTTCTTCCEEECTTCSCCCC------C--CCTTCTTCCEE
T ss_pred EEECCCCcCCeec--CCCCCcCCEEECCCCcc-ceec---cccCCcCCEEECCCCCcccc------c--ccccCCcCCEE
Confidence 9999999999886 88999999999999854 4453 67899999999999854332 1 36788999999
Q ss_pred EEEEecchhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEeccccccceeecccccccccCCccccC
Q 005367 482 EITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFR 561 (700)
Q Consensus 482 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 561 (700)
++++|.+..++ ....++|+.|++.++.- ... .+..+++|+.|++++|. +..++ . ..++
T Consensus 176 ~ls~n~l~~l~-----l~~l~~L~~L~l~~N~l-~~~---~l~~l~~L~~L~Ls~N~-l~~ip---~---------~~l~ 233 (457)
T 3bz5_A 176 DCSFNKITELD-----VSQNKLLNRLNCDTNNI-TKL---DLNQNIQLTFLDCSSNK-LTEID---V---------TPLT 233 (457)
T ss_dssp ECCSSCCCCCC-----CTTCTTCCEEECCSSCC-SCC---CCTTCTTCSEEECCSSC-CSCCC---C---------TTCT
T ss_pred ECCCCccceec-----cccCCCCCEEECcCCcC-Cee---ccccCCCCCEEECcCCc-ccccC---c---------cccC
Confidence 99999988754 23345889999988763 333 36778999999999886 33332 2 2589
Q ss_pred CccEEeeecCcCcccccccccCCCCceEEeeecccccccccccc--CCCCCCccCCCCCCCCccceeeccCccccccccc
Q 005367 562 SLEEVTVRFCRKLKHLTFLVFAPNLKSISVCLCDDMEEIISAGE--FDDIPEMTGIISSPFAKLQRLRLEGLGRLKSIYW 639 (700)
Q Consensus 562 ~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 639 (700)
+|+.|+++++ .+..++ ++.+++|+.|++++. .++.+..... .+.+ ..+.+++|+.|++++|..+..++.
T Consensus 234 ~L~~L~l~~N-~l~~~~-~~~l~~L~~L~l~~n-~L~~L~l~~n~~~~~~------~~~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 234 QLTYFDCSVN-PLTELD-VSTLSKLTTLHCIQT-DLLEIDLTHNTQLIYF------QAEGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp TCSEEECCSS-CCSCCC-CTTCTTCCEEECTTC-CCSCCCCTTCTTCCEE------ECTTCTTCCCCCCTTCTTCCEEEC
T ss_pred CCCEEEeeCC-cCCCcC-HHHCCCCCEEeccCC-CCCEEECCCCccCCcc------cccccccCCEEECCCCcccceecc
Confidence 9999999998 555555 667777777776652 3443322111 1112 245789999999999988887764
Q ss_pred CCCCCCCccEEEEcCCCCCCCCCCCCCCc-ceEeecchhhhhcCccccccccc
Q 005367 640 KPLPLPRLKELEVRGCDSLEKLPLDSNGR-RILIRGHEDWWRRLQWEDEATQN 691 (700)
Q Consensus 640 ~~~~~~~L~~L~i~~C~~L~~lp~~~~~~-~~~i~~~~~~~~~l~~~~~~~~~ 691 (700)
..++|+.|++++|++|+.+....+.. .+.+..|+.+ +.|+..+|.+.+
T Consensus 305 ---~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~l~~l~~L-~~L~l~~N~l~~ 353 (457)
T 3bz5_A 305 ---QAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKL-KSLSCVNAHIQD 353 (457)
T ss_dssp ---TTCCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTC-SEEECCSSCCCB
T ss_pred ---CCCcceEechhhcccCCEEECCCCcccccccccCCcC-cEEECCCCCCCC
Confidence 34666666677777666666555444 3345555554 445555544443
No 27
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=1.1e-22 Score=231.95 Aligned_cols=266 Identities=17% Similarity=0.178 Sum_probs=181.6
Q ss_pred ceEEEcCCCCCCCCccccccccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCc
Q 005367 308 GFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNE 385 (700)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 385 (700)
..+...+.++..+|..+. +++++|++++|.++.++ .+..+++|++|++++|.++...+..+.++++|++|+|++|
T Consensus 7 ~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n- 83 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN- 83 (680)
T ss_dssp SEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-
T ss_pred CeeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-
Confidence 346667778888887765 78999999999998887 4788899999999999988888888889999999999998
Q ss_pred ccccCCc-ccccccccceeccccCcccccc-hhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccC
Q 005367 386 TLRQLPM-GISKLVSLQLLDISYTRVRELP-EELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYS 463 (700)
Q Consensus 386 ~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 463 (700)
.++.+|. .++.+++|++|++++|++..++ ..++++++|++|++++|......|. .++++++|++|++++|.+...
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~-- 160 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQAL-- 160 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC-SSSCCTTCCEEECCSSCCCCB--
T ss_pred ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCch-hhcccccCCEEEccCCccccc--
Confidence 5667765 5888999999999999888766 4688899999999998865443343 378889999999988876332
Q ss_pred cccchHHHHh--cCCCcceEEEEEecchhhHhh--hhccc-----------------------ccccchhhhccccCCCc
Q 005367 464 WHENVAEELL--GLKYLEVLEITFRRFEAYQTF--LSSQK-----------------------LRSCTQALFLHEFDREE 516 (700)
Q Consensus 464 ~~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~--~~~~~-----------------------~~~~L~~L~l~~~~~~~ 516 (700)
.+..+. .+++|+.|++++|.+...... ..... ..++|+.|+++++. +.
T Consensus 161 ----~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~-l~ 235 (680)
T 1ziw_A 161 ----KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ-LS 235 (680)
T ss_dssp ----CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSC-CC
T ss_pred ----CHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCc-cc
Confidence 233332 457788888887765433211 00000 01355666666654 22
Q ss_pred eeeecCcCccc--cccEEEEeccccccceeecccccccccCCccccCCccEEeeecCcCccccc-ccccCCCCceEEeee
Q 005367 517 SIDVAGLADLE--QLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLT-FLVFAPNLKSISVCL 593 (700)
Q Consensus 517 ~~~~~~l~~l~--~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~ 593 (700)
......+..++ +|+.|++++|. +..+.+..+. .+++|++|++++|......+ .++.+++|+.|++++
T Consensus 236 ~~~~~~~~~l~~~~L~~L~Ls~n~-l~~~~~~~~~---------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (680)
T 1ziw_A 236 TTSNTTFLGLKWTNLTMLDLSYNN-LNVVGNDSFA---------WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305 (680)
T ss_dssp EECTTTTGGGGGSCCCEEECTTSC-CCEECTTTTT---------TCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTT
T ss_pred ccChhHhhccCcCCCCEEECCCCC-cCccCccccc---------CcccccEeeCCCCccCccChhhhcCCCCccEEeccc
Confidence 22223444443 37788877765 3333333332 46777777777764322222 466677777777765
Q ss_pred c
Q 005367 594 C 594 (700)
Q Consensus 594 ~ 594 (700)
+
T Consensus 306 ~ 306 (680)
T 1ziw_A 306 S 306 (680)
T ss_dssp C
T ss_pred h
Confidence 3
No 28
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=1.7e-22 Score=222.86 Aligned_cols=142 Identities=20% Similarity=0.235 Sum_probs=116.7
Q ss_pred ceEEEcCCCCCCCCccccccccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCc
Q 005367 308 GFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNE 385 (700)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 385 (700)
..+...++++..+|..+. +++++|++++|.++.++ .+..+++|++|++++|.++...+..|.++++|++|+|++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N- 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN- 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-
Confidence 457778888889988776 89999999999999887 5888999999999999999888888999999999999999
Q ss_pred ccccCCcccccccccceeccccCcccc--cchhhhcCCCCCEEecccccCccccchhhhcCCCcc--ceeeccccCc
Q 005367 386 TLRQLPMGISKLVSLQLLDISYTRVRE--LPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRL--RVLRMFATGL 458 (700)
Q Consensus 386 ~~~~lp~~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L--~~L~l~~~~~ 458 (700)
.++.+|.. .+++|++|++++|++.. +|..++.+++|++|++++|.... . .+..+++| +.|++++|.+
T Consensus 80 ~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~-~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 80 KLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---S-SVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---G-GGGGGTTSCEEEEEEEECTT
T ss_pred ceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---h-hccccccceeeEEEeecccc
Confidence 66778766 78999999999999884 67889999999999999885432 1 14555666 7777776655
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1.4e-22 Score=226.65 Aligned_cols=298 Identities=15% Similarity=0.180 Sum_probs=182.2
Q ss_pred cccceeeeeccccccCCCC--CCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccC-Cccccccccccee
Q 005367 327 WEMGRRLSLMKNSIKNLPT--IPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQL-PMGISKLVSLQLL 403 (700)
Q Consensus 327 ~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L 403 (700)
+++++.+++.++.+..+|. +..+++|++|++++|.++..++..|..+++|++|+|++|. ++.+ |..++.+++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEE
Confidence 4567777777777777764 5667777777777777777776667777777777777774 4444 3446777777777
Q ss_pred ccccCcccccchh-hhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcceEE
Q 005367 404 DISYTRVRELPEE-LKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLE 482 (700)
Q Consensus 404 ~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 482 (700)
++++|.+..+|.. ++.+++|++|++++|.. ..+++..++++++|+.|++++|.+... .++.+++|+.|+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~---------~~~~l~~L~~L~ 198 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHV---------DLSLIPSLFHAN 198 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTTTCTTCCEEECTTSCCSBC---------CGGGCTTCSEEE
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcC-CCCChhhhhcCCcCcEEECcCCCCCCc---------Chhhhhhhhhhh
Confidence 7777777777665 46777777777777743 344443367777777777777766432 145567777777
Q ss_pred EEEecchhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEeccccccceeecccccccccCCccccCC
Q 005367 483 ITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRS 562 (700)
Q Consensus 483 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 562 (700)
+++|.+..+. ...+|+.|+++++.. ...+. . ..++|+.|++++|.... +.++ ..+++
T Consensus 199 l~~n~l~~l~-------~~~~L~~L~ls~n~l-~~~~~-~--~~~~L~~L~L~~n~l~~---~~~l---------~~l~~ 255 (597)
T 3oja_B 199 VSYNLLSTLA-------IPIAVEELDASHNSI-NVVRG-P--VNVELTILKLQHNNLTD---TAWL---------LNYPG 255 (597)
T ss_dssp CCSSCCSEEE-------CCTTCSEEECCSSCC-CEEEC-S--CCSCCCEEECCSSCCCC---CGGG---------GGCTT
T ss_pred cccCcccccc-------CCchhheeeccCCcc-ccccc-c--cCCCCCEEECCCCCCCC---Chhh---------ccCCC
Confidence 7766654432 233566666666642 22221 1 12567777777665322 1222 24677
Q ss_pred ccEEeeecCcCcccc-cccccCCCCceEEeeeccccccccccccCCCCCCccCCCCCCCCccceeeccCcccccccccCC
Q 005367 563 LEEVTVRFCRKLKHL-TFLVFAPNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPFAKLQRLRLEGLGRLKSIYWKP 641 (700)
Q Consensus 563 L~~L~l~~~~~l~~l-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~ 641 (700)
|+.|++++|...... ..++.+++|+.|+|+++ .++.+. .....+++|+.|+|++| .+..++...
T Consensus 256 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~-------------~~~~~l~~L~~L~Ls~N-~l~~i~~~~ 320 (597)
T 3oja_B 256 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALN-------------LYGQPIPTLKVLDLSHN-HLLHVERNQ 320 (597)
T ss_dssp CSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEE-------------CSSSCCTTCCEEECCSS-CCCCCGGGH
T ss_pred CCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCC-------------cccccCCCCcEEECCCC-CCCccCccc
Confidence 777777776432222 24667777777777764 333331 23355677777777765 455665555
Q ss_pred CCCCCccEEEEcCCCCCCCCCCCCCCc--ceEeec
Q 005367 642 LPLPRLKELEVRGCDSLEKLPLDSNGR--RILIRG 674 (700)
Q Consensus 642 ~~~~~L~~L~i~~C~~L~~lp~~~~~~--~~~i~~ 674 (700)
..+++|++|++++| +++.+|...... .+.+.+
T Consensus 321 ~~l~~L~~L~L~~N-~l~~~~~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 321 PQFDRLENLYLDHN-SIVTLKLSTHHTLKNLTLSH 354 (597)
T ss_dssp HHHTTCSEEECCSS-CCCCCCCCTTCCCSEEECCS
T ss_pred ccCCCCCEEECCCC-CCCCcChhhcCCCCEEEeeC
Confidence 55677777777776 456665433222 455544
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1.2e-22 Score=227.42 Aligned_cols=298 Identities=19% Similarity=0.222 Sum_probs=236.2
Q ss_pred cceEEEcCCCCCCCCcc-ccccccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccC
Q 005367 307 EGFLVYAGSGLTEAPAD-VRGWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSG 383 (700)
Q Consensus 307 ~~~~~~~~~~~~~~~~~-~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 383 (700)
-..+.+.++.+..+|.. +..+++|+.|++++|.+..++ .+..+++|++|++++|.++..++..|+.+++|++|+|++
T Consensus 53 l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 132 (597)
T 3oja_B 53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 132 (597)
T ss_dssp CSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeC
Confidence 35677888888888765 577899999999999999887 689999999999999999999999899999999999999
Q ss_pred CcccccCCcc-cccccccceeccccCcccccch-hhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccc
Q 005367 384 NETLRQLPMG-ISKLVSLQLLDISYTRVRELPE-ELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISF 461 (700)
Q Consensus 384 ~~~~~~lp~~-~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~ 461 (700)
| .++.+|.. ++.+++|++|++++|.+..++. .++.+++|+.|++++|. +..++ ++.+++|+.|++++|.+..
T Consensus 133 n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---~~~l~~L~~L~l~~n~l~~- 206 (597)
T 3oja_B 133 N-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNLLST- 206 (597)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC---GGGCTTCSEEECCSSCCSE-
T ss_pred C-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC---hhhhhhhhhhhcccCcccc-
Confidence 9 67777765 5899999999999999996654 58999999999999985 44444 4578999999999887643
Q ss_pred cCcccchHHHHhcCCCcceEEEEEecchhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEecccccc
Q 005367 462 YSWHENVAEELLGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIK 541 (700)
Q Consensus 462 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~ 541 (700)
+...++|+.|++++|.+..+.. ....+|+.|+++++.... ...+..+++|+.|++++|. +.
T Consensus 207 ----------l~~~~~L~~L~ls~n~l~~~~~-----~~~~~L~~L~L~~n~l~~---~~~l~~l~~L~~L~Ls~N~-l~ 267 (597)
T 3oja_B 207 ----------LAIPIAVEELDASHNSINVVRG-----PVNVELTILKLQHNNLTD---TAWLLNYPGLVEVDLSYNE-LE 267 (597)
T ss_dssp ----------EECCTTCSEEECCSSCCCEEEC-----SCCSCCCEEECCSSCCCC---CGGGGGCTTCSEEECCSSC-CC
T ss_pred ----------ccCCchhheeeccCCccccccc-----ccCCCCCEEECCCCCCCC---ChhhccCCCCCEEECCCCc-cC
Confidence 3445689999999988765543 223579999999886433 2457778999999999887 44
Q ss_pred ceeecccccccccCCccccCCccEEeeecCcCccccc-ccccCCCCceEEeeeccccccccccccCCCCCCccCCCCCCC
Q 005367 542 GLKIDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLT-FLVFAPNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPF 620 (700)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 620 (700)
...+..+. .+++|+.|+|++| .+..++ .+..+++|+.|+|++|. ++.++ ..+..+
T Consensus 268 ~~~~~~~~---------~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~-------------~~~~~l 323 (597)
T 3oja_B 268 KIMYHPFV---------KMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVE-------------RNQPQF 323 (597)
T ss_dssp EEESGGGT---------TCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSC-CCCCG-------------GGHHHH
T ss_pred CCCHHHhc---------CccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCC-CCccC-------------cccccC
Confidence 44444443 5899999999997 455555 45678999999999974 33332 245678
Q ss_pred CccceeeccCcccccccccCCCCCCCccEEEEcCCC
Q 005367 621 AKLQRLRLEGLGRLKSIYWKPLPLPRLKELEVRGCD 656 (700)
Q Consensus 621 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~C~ 656 (700)
++|+.|+|++| .+..++ ...+++|++|++++++
T Consensus 324 ~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 324 DRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp TTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred CCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCC
Confidence 99999999986 566665 4568999999999875
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=1.7e-21 Score=226.79 Aligned_cols=173 Identities=19% Similarity=0.236 Sum_probs=135.5
Q ss_pred ceEEEcCCCCCCCCccccccccceeeeeccccccCCC--CCCCCCceeEEEecCCC-CcccccccccCCCcceEEEccCC
Q 005367 308 GFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNP-LTTIAGGFFQSMPCLTVLKMSGN 384 (700)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~L~~~ 384 (700)
..+...+.++..+|. ..++++.|++++|.++.++ .+..+++|++|++++|. +..+.+..|.++++|++|+|++|
T Consensus 7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred eEEEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 456677889999987 3479999999999998875 68999999999999995 44555777899999999999999
Q ss_pred cccccCCcccccccccceeccccCcccc-cchh--hhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccc
Q 005367 385 ETLRQLPMGISKLVSLQLLDISYTRVRE-LPEE--LKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISF 461 (700)
Q Consensus 385 ~~~~~lp~~~~~l~~L~~L~l~~~~l~~-lp~~--~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~ 461 (700)
......|..++.+++|++|++++|++.. .|.. ++++++|++|++++|...+..+...++++++|+.|++++|.+...
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 5544558889999999999999999984 5655 889999999999998654444433488999999999999877432
Q ss_pred cCcccchHHHHhcC--CCcceEEEEEecch
Q 005367 462 YSWHENVAEELLGL--KYLEVLEITFRRFE 489 (700)
Q Consensus 462 ~~~~~~~~~~l~~l--~~L~~L~l~~~~~~ 489 (700)
. +..+..+ ++|+.|+++.|.+.
T Consensus 164 ~------~~~l~~l~~~~L~~L~L~~n~l~ 187 (844)
T 3j0a_A 164 C------EHELEPLQGKTLSFFSLAANSLY 187 (844)
T ss_dssp C------SGGGHHHHHCSSCCCEECCSBSC
T ss_pred C------HHHcccccCCccceEECCCCccc
Confidence 1 1223333 56777777766554
No 32
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=3.4e-22 Score=206.81 Aligned_cols=296 Identities=17% Similarity=0.113 Sum_probs=212.2
Q ss_pred ccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccccccccceecccc
Q 005367 328 EMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQLLDISY 407 (700)
Q Consensus 328 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~ 407 (700)
.+++.++++++.++.+|.- -.++|++|++++|.++..++..+.++++|++|++++|......|..++.+++|++|++++
T Consensus 33 c~l~~l~~~~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKE-ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EETTEEECCSSCCSSCCSC-CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred ccCCEEECCCCCccccCCC-CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 3688889999888888842 247899999999998888887788999999999999943333477788899999999999
Q ss_pred CcccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcceEEEEEec
Q 005367 408 TRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEITFRR 487 (700)
Q Consensus 408 ~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 487 (700)
|++..+|..+. ++|++|++++|. +..++...+.++++|+.|++++|.+... ...+..+..+ +|+.|++++|.
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~l-~L~~L~l~~n~ 183 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENS----GFEPGAFDGL-KLNYLRISEAK 183 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGG----GSCTTSSCSC-CCSCCBCCSSB
T ss_pred CcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccC----CCCcccccCC-ccCEEECcCCC
Confidence 99998887665 799999999885 4566766688899999999998877431 1123334555 88999999888
Q ss_pred chhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEeccccccceeecccccccccCCccccCCccEEe
Q 005367 488 FEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEVT 567 (700)
Q Consensus 488 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~ 567 (700)
+..++.. ..++|+.|+++++. +.......+..+++|+.|++++|. +..+.+..+. .+++|++|+
T Consensus 184 l~~l~~~-----~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~---------~l~~L~~L~ 247 (332)
T 2ft3_A 184 LTGIPKD-----LPETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLS---------FLPTLRELH 247 (332)
T ss_dssp CSSCCSS-----SCSSCSCCBCCSSC-CCCCCTTSSTTCTTCSCCBCCSSC-CCCCCTTGGG---------GCTTCCEEE
T ss_pred CCccCcc-----ccCCCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCc-CCcCChhHhh---------CCCCCCEEE
Confidence 7765432 23588899998875 344444567788999999999876 4433333333 589999999
Q ss_pred eecCcCccccc-ccccCCCCceEEeeeccccccccccccCCCCCCccCCCCCCCCccceeeccCcccc--cccccCCCCC
Q 005367 568 VRFCRKLKHLT-FLVFAPNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPFAKLQRLRLEGLGRL--KSIYWKPLPL 644 (700)
Q Consensus 568 l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l--~~l~~~~~~~ 644 (700)
+++| .+..+| .++.+++|+.|+++++ .++.+........ .....++.|+.|++.+++-. ...+.....+
T Consensus 248 L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~------~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l 319 (332)
T 2ft3_A 248 LDNN-KLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPV------GFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319 (332)
T ss_dssp CCSS-CCCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCS------SCCSSSCCBSEEECCSSSSCGGGSCGGGGTTB
T ss_pred CCCC-cCeecChhhhcCccCCEEECCCC-CCCccChhHcccc------ccccccccccceEeecCcccccccCccccccc
Confidence 9998 455655 5889999999999985 4665543211110 01123678999999987532 2222234457
Q ss_pred CCccEEEEcCCC
Q 005367 645 PRLKELEVRGCD 656 (700)
Q Consensus 645 ~~L~~L~i~~C~ 656 (700)
++|+.|+++++.
T Consensus 320 ~~L~~l~l~~n~ 331 (332)
T 2ft3_A 320 TDRLAIQFGNYK 331 (332)
T ss_dssp CCSTTEEC----
T ss_pred chhhhhhccccc
Confidence 889999998875
No 33
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=4.7e-22 Score=222.04 Aligned_cols=327 Identities=16% Similarity=0.119 Sum_probs=214.4
Q ss_pred cceEEEcCCCCCCCC-ccccccccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccC
Q 005367 307 EGFLVYAGSGLTEAP-ADVRGWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSG 383 (700)
Q Consensus 307 ~~~~~~~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 383 (700)
-..+.+.++.+..++ ..+.++++|+.|++++|.++.++ .|..+++|++|++++|.++.+++..++++++|++|++++
T Consensus 54 L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~ 133 (570)
T 2z63_A 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133 (570)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCS
T ss_pred ceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCC
Confidence 456777888888775 46889999999999999999886 689999999999999999988876689999999999999
Q ss_pred Ccccc-cCCcccccccccceeccccCccccc-chhhhcCCCC----CEEecccccCccccch------------------
Q 005367 384 NETLR-QLPMGISKLVSLQLLDISYTRVREL-PEELKALVNL----RCLNLDWAGELVKVPQ------------------ 439 (700)
Q Consensus 384 ~~~~~-~lp~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L----~~L~l~~~~~~~~~p~------------------ 439 (700)
|.... .+|..++++++|++|++++|++..+ +..++.+.+| +.+++++|.... +++
T Consensus 134 n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~-~~~~~~~~~~L~~L~l~~n~~ 212 (570)
T 2z63_A 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFD 212 (570)
T ss_dssp SCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE-ECTTTTTTCEEEEEEEESCCS
T ss_pred CccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCcee-cCHHHhccCcceeEecccccc
Confidence 94333 4788999999999999999999965 4567888888 899998874321 111
Q ss_pred ---------------------------------------------------------------hhhcCCCccceeecccc
Q 005367 440 ---------------------------------------------------------------QLLSNFSRLRVLRMFAT 456 (700)
Q Consensus 440 ---------------------------------------------------------------~~~~~l~~L~~L~l~~~ 456 (700)
..++.+++|+.|++++|
T Consensus 213 ~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 292 (570)
T 2z63_A 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292 (570)
T ss_dssp CTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESC
T ss_pred cccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCc
Confidence 11233455666666555
Q ss_pred CcccccCccc---------------chHH--------------------HHhcCCCcceEEEEEecchhhHhhhhccccc
Q 005367 457 GLISFYSWHE---------------NVAE--------------------ELLGLKYLEVLEITFRRFEAYQTFLSSQKLR 501 (700)
Q Consensus 457 ~~~~~~~~~~---------------~~~~--------------------~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 501 (700)
.+........ ..+. ....+++|+.|++++|.+.............
T Consensus 293 ~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 372 (570)
T 2z63_A 293 TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372 (570)
T ss_dssp EECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTC
T ss_pred cchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccccccccccc
Confidence 4322110000 0000 0023444555555444433221000111112
Q ss_pred ccchhhhccccCC-----------------------CceeeecCcCccccccEEEEeccccccceeecccccccccCCcc
Q 005367 502 SCTQALFLHEFDR-----------------------EESIDVAGLADLEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPY 558 (700)
Q Consensus 502 ~~L~~L~l~~~~~-----------------------~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 558 (700)
++|+.|+++++.. ....+...+..+++|++|++++|.... ..+.. ..
T Consensus 373 ~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~---------~~ 442 (570)
T 2z63_A 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNGI---------FN 442 (570)
T ss_dssp SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE-CCTTT---------TT
T ss_pred CccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccc-cchhh---------hh
Confidence 3455555555432 111111234445566666665554222 11222 23
Q ss_pred ccCCccEEeeecCcCc-ccc-cccccCCCCceEEeeeccccccccccccCCCCCCccCCCCCCCCccceeeccCcccccc
Q 005367 559 VFRSLEEVTVRFCRKL-KHL-TFLVFAPNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPFAKLQRLRLEGLGRLKS 636 (700)
Q Consensus 559 ~~~~L~~L~l~~~~~l-~~l-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 636 (700)
.+++|++|++++|... ..+ ..++.+++|+.|++++|. ++.+.. ..+..+++|++|++++| .++.
T Consensus 443 ~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~------------~~~~~l~~L~~L~l~~n-~l~~ 508 (570)
T 2z63_A 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSP------------TAFNSLSSLQVLNMASN-QLKS 508 (570)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECT------------TTTTTCTTCCEEECCSS-CCSC
T ss_pred cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccCCh------------hhhhcccCCCEEeCCCC-cCCC
Confidence 5899999999998643 233 468899999999999974 444422 46778999999999986 6666
Q ss_pred cccC-CCCCCCccEEEEcCCCCC
Q 005367 637 IYWK-PLPLPRLKELEVRGCDSL 658 (700)
Q Consensus 637 l~~~-~~~~~~L~~L~i~~C~~L 658 (700)
++.. ...+++|++|++++++--
T Consensus 509 ~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 509 VPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCHHHhhcccCCcEEEecCCccc
Confidence 6543 456899999999998533
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=1.7e-21 Score=212.34 Aligned_cols=291 Identities=18% Similarity=0.172 Sum_probs=229.2
Q ss_pred cceEEEcCCCCCCCC-ccccccccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccC
Q 005367 307 EGFLVYAGSGLTEAP-ADVRGWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSG 383 (700)
Q Consensus 307 ~~~~~~~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 383 (700)
-..+.+.++.+..++ ..+..+++|+.|++++|.++.++ .|..+++|++|++++|.++.+++..|.++++|++|+|++
T Consensus 34 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 113 (477)
T 2id5_A 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISE 113 (477)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTT
T ss_pred CcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCC
Confidence 456778888888774 57889999999999999999874 689999999999999999999988899999999999999
Q ss_pred CcccccCCcccccccccceeccccCccccc-chhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCccccc
Q 005367 384 NETLRQLPMGISKLVSLQLLDISYTRVREL-PEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFY 462 (700)
Q Consensus 384 ~~~~~~lp~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~ 462 (700)
|......|..+..+++|++|++++|.+..+ +..+..+++|+.|++++|. +..++...+.++++|+.|++.+|.+...
T Consensus 114 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~- 191 (477)
T 2id5_A 114 NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAI- 191 (477)
T ss_dssp SCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCCEE-
T ss_pred CccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCcEe-
Confidence 955555577899999999999999999855 4568899999999999985 5667766689999999999999887442
Q ss_pred CcccchHHHHhcCCCcceEEEEEecchh-hHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEecccccc
Q 005367 463 SWHENVAEELLGLKYLEVLEITFRRFEA-YQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIK 541 (700)
Q Consensus 463 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~ 541 (700)
.+..+..+++|+.|++++|.... +... .....+|+.|+++++. +...+...+..+++|+.|++++|. +.
T Consensus 192 -----~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~ 261 (477)
T 2id5_A 192 -----RDYSFKRLYRLKVLEISHWPYLDTMTPN---CLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNP-IS 261 (477)
T ss_dssp -----CTTCSCSCTTCCEEEEECCTTCCEECTT---TTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSC-CC
T ss_pred -----ChhhcccCcccceeeCCCCccccccCcc---cccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCc-CC
Confidence 22346788999999999876432 1111 1112379999999885 444443457788999999999887 44
Q ss_pred ceeecccccccccCCccccCCccEEeeecCcCcccc--cccccCCCCceEEeeeccccccccccccCCCCCCccCCCCCC
Q 005367 542 GLKIDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHL--TFLVFAPNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSP 619 (700)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 619 (700)
.++...+. .+++|++|+++++. +..+ ..+..+++|+.|+|+++ .++.+.. ..+..
T Consensus 262 ~~~~~~~~---------~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~------------~~~~~ 318 (477)
T 2id5_A 262 TIEGSMLH---------ELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGN-QLTTLEE------------SVFHS 318 (477)
T ss_dssp EECTTSCT---------TCTTCCEEECCSSC-CSEECTTTBTTCTTCCEEECCSS-CCSCCCG------------GGBSC
T ss_pred ccChhhcc---------ccccCCEEECCCCc-cceECHHHhcCcccCCEEECCCC-cCceeCH------------hHcCC
Confidence 44443333 68999999999984 4443 35789999999999996 4554432 35678
Q ss_pred CCccceeeccCcc
Q 005367 620 FAKLQRLRLEGLG 632 (700)
Q Consensus 620 ~~~L~~L~l~~c~ 632 (700)
+++|+.|++++++
T Consensus 319 l~~L~~L~l~~N~ 331 (477)
T 2id5_A 319 VGNLETLILDSNP 331 (477)
T ss_dssp GGGCCEEECCSSC
T ss_pred CcccCEEEccCCC
Confidence 8999999999754
No 35
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=1.2e-20 Score=209.97 Aligned_cols=142 Identities=27% Similarity=0.324 Sum_probs=121.7
Q ss_pred ceEEEcCCCCCCCCccccccccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCc
Q 005367 308 GFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNE 385 (700)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 385 (700)
..+...++++..+|..+. ++++.|++++|.++.++ .+..+++|++|++++|.++.+.+..|.++++|++|++++|
T Consensus 34 ~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N- 110 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN- 110 (562)
T ss_dssp CEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-
T ss_pred cEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-
Confidence 567788899999998775 89999999999999987 6899999999999999999998888999999999999999
Q ss_pred ccccCCcccccccccceeccccCcccccc--hhhhcCCCCCEEecccccCccccchhhhcCCCcc--ceeeccccCc
Q 005367 386 TLRQLPMGISKLVSLQLLDISYTRVRELP--EELKALVNLRCLNLDWAGELVKVPQQLLSNFSRL--RVLRMFATGL 458 (700)
Q Consensus 386 ~~~~lp~~~~~l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L--~~L~l~~~~~ 458 (700)
.++.+|.. .+++|++|++++|++..++ ..++++++|++|++++|.... .. +..+++| +.|++++|.+
T Consensus 111 ~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 111 RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-TT---TGGGTTSCEEEEEEEESSC
T ss_pred cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-Cc---hhhhhhceeeEEEeecccc
Confidence 57788876 8999999999999998654 789999999999999985432 22 4444555 8899888766
No 36
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=1e-21 Score=218.15 Aligned_cols=150 Identities=19% Similarity=0.213 Sum_probs=117.1
Q ss_pred cceEEEcCCCCCCC-CccccccccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccC
Q 005367 307 EGFLVYAGSGLTEA-PADVRGWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSG 383 (700)
Q Consensus 307 ~~~~~~~~~~~~~~-~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 383 (700)
-..+.+.++.+..+ |..+.++++|++|++++|.+..++ .+..+++|++|++++|.++..++..+.++++|++|++++
T Consensus 28 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 107 (549)
T 2z81_A 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 107 (549)
T ss_dssp CCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTT
T ss_pred ccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCC
Confidence 35577777777766 457888899999999999988876 488899999999999999888888788999999999999
Q ss_pred Ccccc--cCCcccccccccceeccccCc-ccccc-hhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCc
Q 005367 384 NETLR--QLPMGISKLVSLQLLDISYTR-VRELP-EELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGL 458 (700)
Q Consensus 384 ~~~~~--~lp~~~~~l~~L~~L~l~~~~-l~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~ 458 (700)
| .++ ..|..++.+++|++|++++|. +..+| ..+..+++|++|++++|...+..|.. ++++++|++|+++.|..
T Consensus 108 n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 108 N-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHLSES 184 (549)
T ss_dssp C-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSBS
T ss_pred C-cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEecccCcc
Confidence 9 444 346678889999999999987 55666 46888889999999888655445554 66666666666665543
No 37
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=2.4e-21 Score=209.91 Aligned_cols=308 Identities=15% Similarity=0.148 Sum_probs=213.4
Q ss_pred eeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccC-CcccccccccceeccccCc
Q 005367 331 RRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQL-PMGISKLVSLQLLDISYTR 409 (700)
Q Consensus 331 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~l~~~~ 409 (700)
+.++..++.++.+|.+ .++|++|++++|.++...+..+.++++|++|++++|.....+ +..+..+++|++|++++|+
T Consensus 13 ~~~~c~~~~l~~lp~l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 13 YNAICINRGLHQVPEL--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp TEEECCSSCCSSCCCC--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred cccCcCCCCcccCCCC--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 3466677788888873 389999999999999998888999999999999999554455 5568999999999999999
Q ss_pred cccc-chhhhcCCCCCEEecccccCccccch-hhhcCCCccceeeccccCcccccCcccchHHH-HhcCCCcceEEEEEe
Q 005367 410 VREL-PEELKALVNLRCLNLDWAGELVKVPQ-QLLSNFSRLRVLRMFATGLISFYSWHENVAEE-LLGLKYLEVLEITFR 486 (700)
Q Consensus 410 l~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~ 486 (700)
+..+ |..++.+++|++|++++|...+..+. ..++++++|++|++++|.+... .+.. +..+++|++|++++|
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI------QPASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSC------CCCGGGGGCTTCCEEECTTC
T ss_pred cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCcc------CcccccCCCCcccEEeCCCC
Confidence 9955 77899999999999999965443332 3378899999999999987442 1222 678999999999999
Q ss_pred cchhhHhhhhcccccccchhhhccccCCCceeee-------cCcCccccccEEEEeccccccc----------------e
Q 005367 487 RFEAYQTFLSSQKLRSCTQALFLHEFDREESIDV-------AGLADLEQLNTLIFYSCDWIKG----------------L 543 (700)
Q Consensus 487 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-------~~l~~l~~L~~L~l~~~~~l~~----------------~ 543 (700)
.+..........-....++.|++.++........ ..+..+++|++|++++|..... +
T Consensus 165 ~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L 244 (455)
T 3v47_A 165 KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL 244 (455)
T ss_dssp CBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEE
T ss_pred cccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeE
Confidence 8765432111111123566666666543221110 1122346677777776642211 1
Q ss_pred eeccccc-------------ccccCCccccCCccEEeeecCcCccccc-ccccCCCCceEEeeeccccccccccccCCCC
Q 005367 544 KIDYKDM-------------VQKSRQPYVFRSLEEVTVRFCRKLKHLT-FLVFAPNLKSISVCLCDDMEEIISAGEFDDI 609 (700)
Q Consensus 544 ~~~~~~~-------------~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 609 (700)
....... ..........++|++|++++|.....++ .++.+++|+.|+++++. ++.+..
T Consensus 245 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~------- 316 (455)
T 3v47_A 245 ILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDD------- 316 (455)
T ss_dssp ECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECT-------
T ss_pred eeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccCh-------
Confidence 1000000 0000000124689999999985444433 48899999999999864 444422
Q ss_pred CCccCCCCCCCCccceeeccCcccccccc-cCCCCCCCccEEEEcCCCCCCCC
Q 005367 610 PEMTGIISSPFAKLQRLRLEGLGRLKSIY-WKPLPLPRLKELEVRGCDSLEKL 661 (700)
Q Consensus 610 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~~~~L~~L~i~~C~~L~~l 661 (700)
..+..+++|++|++++| .++.++ .....+++|++|++++| +++.+
T Consensus 317 -----~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~ 362 (455)
T 3v47_A 317 -----NAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYN-HIRAL 362 (455)
T ss_dssp -----TTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSS-CCCEE
T ss_pred -----hHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCC-ccccc
Confidence 46778999999999987 556653 34556899999999988 55655
No 38
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=3.3e-21 Score=199.20 Aligned_cols=295 Identities=18% Similarity=0.138 Sum_probs=200.3
Q ss_pred ccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccccccccceecccc
Q 005367 328 EMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQLLDISY 407 (700)
Q Consensus 328 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~ 407 (700)
.+++.++++++.++.+|.- -.++|++|++++|.++.+++..+..+++|++|++++|......|..++.+++|++|++++
T Consensus 31 c~l~~l~~~~~~l~~lp~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp EETTEEECTTSCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCCeEEEecCCCccccCcc-CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 3677788888888877741 236888888888888888877788888888888888843333477788888888888888
Q ss_pred CcccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcceEEEEEec
Q 005367 408 TRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEITFRR 487 (700)
Q Consensus 408 ~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 487 (700)
|+++.+|..+. ++|++|++++|. +..++...+.++++|+.|++++|.+... ...+..+..+++|+.|++++|.
T Consensus 110 n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 110 NQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSS----GIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp SCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGG----GBCTTGGGGCTTCCEEECCSSC
T ss_pred CcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCcc----CcChhhccCCCCcCEEECCCCc
Confidence 88888877654 688888888874 4556655578888888888888776431 1223456778888888888887
Q ss_pred chhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEeccccccceeecccccccccCCccccCCccEEe
Q 005367 488 FEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEVT 567 (700)
Q Consensus 488 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~ 567 (700)
+..++.. ..++|+.|+++++. +.......+..+++|+.|++++|. +..+....+. .+++|++|+
T Consensus 183 l~~l~~~-----~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~---------~l~~L~~L~ 246 (330)
T 1xku_A 183 ITTIPQG-----LPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLA---------NTPHLRELH 246 (330)
T ss_dssp CCSCCSS-----CCTTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSC-CCEECTTTGG---------GSTTCCEEE
T ss_pred cccCCcc-----ccccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCc-CceeChhhcc---------CCCCCCEEE
Confidence 7654432 22577888887775 444444567778889999998876 3333333333 578899999
Q ss_pred eecCcCccccc-ccccCCCCceEEeeeccccccccccccCCCCCCccCCCCCCCCccceeeccCccccccc---ccCCCC
Q 005367 568 VRFCRKLKHLT-FLVFAPNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPFAKLQRLRLEGLGRLKSI---YWKPLP 643 (700)
Q Consensus 568 l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l---~~~~~~ 643 (700)
+++| .+..+| .+..+++|++|+++++ .++.+........ .....++.|+.|++.+.+ +..+ +.....
T Consensus 247 L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~------~~~~~~~~l~~l~l~~N~-~~~~~i~~~~f~~ 317 (330)
T 1xku_A 247 LNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPP------GYNTKKASYSGVSLFSNP-VQYWEIQPSTFRC 317 (330)
T ss_dssp CCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCS------SCCTTSCCCSEEECCSSS-SCGGGSCGGGGTT
T ss_pred CCCC-cCccCChhhccCCCcCEEECCCC-cCCccChhhcCCc------ccccccccccceEeecCc-ccccccCcccccc
Confidence 9987 444554 5788889999999885 4555433211110 011235778888888754 3222 222344
Q ss_pred CCCccEEEEcCC
Q 005367 644 LPRLKELEVRGC 655 (700)
Q Consensus 644 ~~~L~~L~i~~C 655 (700)
+++|+.|+++++
T Consensus 318 ~~~l~~l~L~~N 329 (330)
T 1xku_A 318 VYVRAAVQLGNY 329 (330)
T ss_dssp CCCGGGEEC---
T ss_pred ccceeEEEeccc
Confidence 678888888765
No 39
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.86 E-value=5e-21 Score=222.81 Aligned_cols=320 Identities=18% Similarity=0.153 Sum_probs=220.5
Q ss_pred cceEEEcCCCCCCC-Cccccccccceeeeecccc-ccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEcc
Q 005367 307 EGFLVYAGSGLTEA-PADVRGWEMGRRLSLMKNS-IKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMS 382 (700)
Q Consensus 307 ~~~~~~~~~~~~~~-~~~~~~~~~l~~l~l~~~~-~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~ 382 (700)
-..+.+.++.+..+ |..+.++++|+.|++++|. +..++ .|..+++|++|+|++|.+....+..|.++++|++|+|+
T Consensus 26 l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 105 (844)
T 3j0a_A 26 TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLY 105 (844)
T ss_dssp CCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECT
T ss_pred cCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCc
Confidence 45677888887775 5789999999999999994 44553 68999999999999999999988889999999999999
Q ss_pred CCcccccCCcc--cccccccceeccccCccccc--chhhhcCCCCCEEecccccCccccchhhhcCC--Cccceeecccc
Q 005367 383 GNETLRQLPMG--ISKLVSLQLLDISYTRVREL--PEELKALVNLRCLNLDWAGELVKVPQQLLSNF--SRLRVLRMFAT 456 (700)
Q Consensus 383 ~~~~~~~lp~~--~~~l~~L~~L~l~~~~l~~l--p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l--~~L~~L~l~~~ 456 (700)
+|......|.. ++.+++|++|++++|.+..+ +..++++++|++|++++|......+.. +..+ ++|+.|+++.|
T Consensus 106 ~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~-l~~l~~~~L~~L~L~~n 184 (844)
T 3j0a_A 106 FCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-LEPLQGKTLSFFSLAAN 184 (844)
T ss_dssp TCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG-GHHHHHCSSCCCEECCS
T ss_pred CCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH-cccccCCccceEECCCC
Confidence 99554445654 88999999999999999855 357899999999999998654444444 5555 78999999988
Q ss_pred CcccccCcccchHHHHhcCC------CcceEEEEEecchhhH--hhhhcc------------------------------
Q 005367 457 GLISFYSWHENVAEELLGLK------YLEVLEITFRRFEAYQ--TFLSSQ------------------------------ 498 (700)
Q Consensus 457 ~~~~~~~~~~~~~~~l~~l~------~L~~L~l~~~~~~~~~--~~~~~~------------------------------ 498 (700)
.+.... +..++.++ .|+.|++++|.+.... .+....
T Consensus 185 ~l~~~~------~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~ 258 (844)
T 3j0a_A 185 SLYSRV------SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258 (844)
T ss_dssp BSCCCC------CCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT
T ss_pred cccccc------ccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChh
Confidence 764321 11223333 3888888877543211 111000
Q ss_pred ----cccccchhhhccccCCCceeeecCcCccccccEEEEeccccccceeecccccccccCCccccCCccEEeeecCcCc
Q 005367 499 ----KLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEVTVRFCRKL 574 (700)
Q Consensus 499 ----~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 574 (700)
-...+|+.|+++++. +.......+..+++|+.|++++|. +..+.+..+. .+++|++|++++|. +
T Consensus 259 ~f~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~---------~l~~L~~L~Ls~N~-l 326 (844)
T 3j0a_A 259 TFAGLARSSVRHLDLSHGF-VFSLNSRVFETLKDLKVLNLAYNK-INKIADEAFY---------GLDNLQVLNLSYNL-L 326 (844)
T ss_dssp TTTTTTTSCCCEEECTTCC-CCEECSCCSSSCCCCCEEEEESCC-CCEECTTTTT---------TCSSCCEEEEESCC-C
T ss_pred hhhccccCCccEEECCCCc-ccccChhhhhcCCCCCEEECCCCc-CCCCChHHhc---------CCCCCCEEECCCCC-C
Confidence 002356666666654 233333456667788888887765 3322232222 57788888888774 3
Q ss_pred ccc--cccccCCCCceEEeeeccccccccccccCCCCCCccCCCCCCCCccceeeccCcccccccccCCCCCCCccEEEE
Q 005367 575 KHL--TFLVFAPNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPFAKLQRLRLEGLGRLKSIYWKPLPLPRLKELEV 652 (700)
Q Consensus 575 ~~l--~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i 652 (700)
..+ ..++.+++|+.|+++++ .++.+.. ..+..+++|+.|+++++ .++.++. +++|+.|++
T Consensus 327 ~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~------------~~~~~l~~L~~L~Ls~N-~l~~i~~----~~~L~~L~l 388 (844)
T 3j0a_A 327 GELYSSNFYGLPKVAYIDLQKN-HIAIIQD------------QTFKFLEKLQTLDLRDN-ALTTIHF----IPSIPDIFL 388 (844)
T ss_dssp SCCCSCSCSSCTTCCEEECCSC-CCCCCCS------------SCSCSCCCCCEEEEETC-CSCCCSS----CCSCSEEEE
T ss_pred CccCHHHhcCCCCCCEEECCCC-CCCccCh------------hhhcCCCCCCEEECCCC-CCCcccC----CCCcchhcc
Confidence 333 24677888888888875 3443322 35667788888888875 4554432 677888887
Q ss_pred cCCCCCCCCCCC
Q 005367 653 RGCDSLEKLPLD 664 (700)
Q Consensus 653 ~~C~~L~~lp~~ 664 (700)
+++ +++.+|..
T Consensus 389 ~~N-~l~~l~~~ 399 (844)
T 3j0a_A 389 SGN-KLVTLPKI 399 (844)
T ss_dssp ESC-CCCCCCCC
T ss_pred CCC-Cccccccc
Confidence 776 55566643
No 40
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=3e-21 Score=220.19 Aligned_cols=149 Identities=22% Similarity=0.213 Sum_probs=93.1
Q ss_pred ceEEEcCCCCCCCCc-cccccccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCC
Q 005367 308 GFLVYAGSGLTEAPA-DVRGWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGN 384 (700)
Q Consensus 308 ~~~~~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~ 384 (700)
..+.+.++.+..+|. .+.++++|+.|++++|.+..++ .+..+++|++|++++|.++.+++..|.++++|++|++++|
T Consensus 28 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n 107 (680)
T 1ziw_A 28 TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 107 (680)
T ss_dssp SEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred cEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCC
Confidence 445666666666654 4666777777777777766654 2456677777777777776666666667777777777777
Q ss_pred cccccCC-cccccccccceeccccCccccc-chhhhcCCCCCEEecccccCccccchhhhc--CCCccceeeccccCc
Q 005367 385 ETLRQLP-MGISKLVSLQLLDISYTRVREL-PEELKALVNLRCLNLDWAGELVKVPQQLLS--NFSRLRVLRMFATGL 458 (700)
Q Consensus 385 ~~~~~lp-~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~--~l~~L~~L~l~~~~~ 458 (700)
.++.++ ..++.+++|++|++++|.+... |..++++++|++|++++|.. ...+...++ .+++|+.|++++|.+
T Consensus 108 -~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 108 -SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI-QALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp -CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC-CCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred -ccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcc-cccCHHHhhccccccccEEECCCCcc
Confidence 344443 4566677777777777766633 34456677777777776643 333332222 446677777766654
No 41
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=6.7e-21 Score=210.06 Aligned_cols=144 Identities=19% Similarity=0.199 Sum_probs=117.6
Q ss_pred eeeeeccccccCCCC-CCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccccccccceeccccCc
Q 005367 331 RRLSLMKNSIKNLPT-IPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQLLDISYTR 409 (700)
Q Consensus 331 ~~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 409 (700)
+.++++++.++.+|. +. ++|++|++++|.++..++..+..+++|++|+|++|...+..|..++.+++|++|++++|+
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 578999999999994 33 899999999999999998889999999999999995444447789999999999999999
Q ss_pred ccccchhhhcCCCCCEEecccccCcc-ccchhhhcCCCccceeeccccCcccccCcccchHHHHhcCCCc--ceEEEEEe
Q 005367 410 VRELPEELKALVNLRCLNLDWAGELV-KVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYL--EVLEITFR 486 (700)
Q Consensus 410 l~~lp~~~~~l~~L~~L~l~~~~~~~-~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L--~~L~l~~~ 486 (700)
++.+|.. .+++|++|++++|.... .+|.. ++++++|++|++++|.+... .+..+++| +.|++++|
T Consensus 81 l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~~---------~~~~l~~L~L~~L~l~~n 148 (520)
T 2z7x_B 81 LVKISCH--PTVNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTTHLEKS---------SVLPIAHLNISKVLLVLG 148 (520)
T ss_dssp CCEEECC--CCCCCSEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEESSCCGG---------GGGGGTTSCEEEEEEEEC
T ss_pred eeecCcc--ccCCccEEeccCCccccccchhh-hccCCcceEEEecCcccchh---------hccccccceeeEEEeecc
Confidence 9999877 89999999999996544 35555 89999999999999887431 23344444 55555555
Q ss_pred cc
Q 005367 487 RF 488 (700)
Q Consensus 487 ~~ 488 (700)
.+
T Consensus 149 ~l 150 (520)
T 2z7x_B 149 ET 150 (520)
T ss_dssp TT
T ss_pred cc
Confidence 44
No 42
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=6.5e-21 Score=215.72 Aligned_cols=144 Identities=26% Similarity=0.346 Sum_probs=109.3
Q ss_pred EEcCCCCCCCCccccccccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccc
Q 005367 311 VYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLR 388 (700)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 388 (700)
...+.++..+|..+. +.+++|++++|.++.++ .|..+++|++|+|++|.++.+++..|.++++|++|+|++| .++
T Consensus 37 ~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~ 113 (635)
T 4g8a_A 37 QCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQ 113 (635)
T ss_dssp ECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCC
T ss_pred ECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCC
Confidence 345667788887765 57888888888888877 5788888888888888888888877888888888888888 566
Q ss_pred cCCc-ccccccccceeccccCcccccchh-hhcCCCCCEEecccccCcc-ccchhhhcCCCccceeeccccCc
Q 005367 389 QLPM-GISKLVSLQLLDISYTRVRELPEE-LKALVNLRCLNLDWAGELV-KVPQQLLSNFSRLRVLRMFATGL 458 (700)
Q Consensus 389 ~lp~-~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~-~~p~~~~~~l~~L~~L~l~~~~~ 458 (700)
.+|. .|.++++|++|++++|+++.+|.. ++++++|++|++++|.... ..|.. ++++++|++|++++|.+
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCccc
Confidence 6654 477888888888888888877654 7788888888888875432 23443 67788888888887764
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=2.7e-21 Score=197.84 Aligned_cols=129 Identities=21% Similarity=0.293 Sum_probs=64.5
Q ss_pred cceeeeeccccccC---CC-CCCCCCceeEEEecC-CCCcccccccccCCCcceEEEccCCcccccCCccccccccccee
Q 005367 329 MGRRLSLMKNSIKN---LP-TIPTCPHLLTLFLNR-NPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQLL 403 (700)
Q Consensus 329 ~l~~l~l~~~~~~~---l~-~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L 403 (700)
+++.|+++++.+.. +| .+..+++|++|++++ |.+.+..+..+..+++|++|++++|...+.+|..++.+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 45555555555542 33 344555555555553 44444444445555555555555553223445555555555555
Q ss_pred ccccCccc-ccchhhhcCCCCCEEecccccCccccchhhhcCCC-ccceeeccccCc
Q 005367 404 DISYTRVR-ELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFS-RLRVLRMFATGL 458 (700)
Q Consensus 404 ~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~-~L~~L~l~~~~~ 458 (700)
++++|.+. .+|..+..+++|++|++++|...+.+|.. ++.++ +|+.|++++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCee
Confidence 55555555 44555555555555555555433344443 44444 555555554443
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=5.8e-21 Score=196.60 Aligned_cols=90 Identities=23% Similarity=0.380 Sum_probs=70.0
Q ss_pred CCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccccccccceeccccCcccccchhhhcCCCCCEEec
Q 005367 349 CPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQLLDISYTRVRELPEELKALVNLRCLNL 428 (700)
Q Consensus 349 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l 428 (700)
..+++.|++++|.++.+++. +..+++|++|+|++| .++.+|..++.+++|++|++++|.+..+|..++.+++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChh-hhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 35677778888877766655 556888888888888 4557887788888888888888888888888888888888888
Q ss_pred ccccCccccchh
Q 005367 429 DWAGELVKVPQQ 440 (700)
Q Consensus 429 ~~~~~~~~~p~~ 440 (700)
++|...+.+|..
T Consensus 158 ~~n~~~~~~p~~ 169 (328)
T 4fcg_A 158 RACPELTELPEP 169 (328)
T ss_dssp EEETTCCCCCSC
T ss_pred CCCCCccccChh
Confidence 887777777664
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=1.3e-20 Score=196.63 Aligned_cols=175 Identities=22% Similarity=0.308 Sum_probs=126.6
Q ss_pred eEEEcCCCCCCCCccccccccceeeeeccccccCCCC--CCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcc
Q 005367 309 FLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLPT--IPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNET 386 (700)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 386 (700)
.+...+.++..+|..+. ++++.|++++|.++.++. +..+++|++|++++|.++...+..+.++++|++|++++| .
T Consensus 35 ~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~ 111 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-Y 111 (353)
T ss_dssp EEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-C
T ss_pred EeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-c
Confidence 35556677777777655 478888888888877763 777888888888888877777766778888888888888 5
Q ss_pred cccCCcc-cccccccceeccccCcccccch--hhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccC
Q 005367 387 LRQLPMG-ISKLVSLQLLDISYTRVRELPE--ELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYS 463 (700)
Q Consensus 387 ~~~lp~~-~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 463 (700)
++.+|.. ++.+++|++|++++|++..+|. .+..+++|++|++++|..+..++...++++++|++|++++|.+...
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-- 189 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY-- 189 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE--
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc--
Confidence 5666654 6778888888888888877776 5677888888888877555666554477778888888877765331
Q ss_pred cccchHHHHhcCCCcceEEEEEecchhhH
Q 005367 464 WHENVAEELLGLKYLEVLEITFRRFEAYQ 492 (700)
Q Consensus 464 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 492 (700)
.+..+..+++|++|++++|.+...+
T Consensus 190 ----~~~~l~~l~~L~~L~l~~n~l~~~~ 214 (353)
T 2z80_A 190 ----EPKSLKSIQNVSHLILHMKQHILLL 214 (353)
T ss_dssp ----CTTTTTTCSEEEEEEEECSCSTTHH
T ss_pred ----CHHHHhccccCCeecCCCCccccch
Confidence 2445667777778877777665444
No 46
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.84 E-value=4.8e-20 Score=204.98 Aligned_cols=322 Identities=20% Similarity=0.166 Sum_probs=221.3
Q ss_pred cceEEEcCCCCCCCC-ccccccccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccC
Q 005367 307 EGFLVYAGSGLTEAP-ADVRGWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSG 383 (700)
Q Consensus 307 ~~~~~~~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 383 (700)
-..+.+.++.+..+| ..+.++++|+.|++++|.++.++ .|..+++|++|++++|.++.++.. .+++|++|++++
T Consensus 54 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~ 130 (562)
T 3a79_B 54 TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC---PMASLRHLDLSF 130 (562)
T ss_dssp CCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC---CCTTCSEEECCS
T ss_pred cCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc---ccccCCEEECCC
Confidence 456788888888886 57899999999999999999885 588999999999999999877665 799999999999
Q ss_pred CcccccC--CcccccccccceeccccCcccccchhhhcCCCC--CEEecccccC--ccccchh-----------------
Q 005367 384 NETLRQL--PMGISKLVSLQLLDISYTRVRELPEELKALVNL--RCLNLDWAGE--LVKVPQQ----------------- 440 (700)
Q Consensus 384 ~~~~~~l--p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L--~~L~l~~~~~--~~~~p~~----------------- 440 (700)
| .++.+ |..++++++|++|++++|++... .+..+++| +.|++++|.. ....|..
T Consensus 131 N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~ 207 (562)
T 3a79_B 131 N-DFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS 207 (562)
T ss_dssp S-CCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSS
T ss_pred C-CccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCcc
Confidence 9 45554 47899999999999999988752 44556666 9999988754 2222211
Q ss_pred --------hhcCCCccceeeccccCcccc----------------------cCcc----cchHHHHhcCCCcceEEEEEe
Q 005367 441 --------LLSNFSRLRVLRMFATGLISF----------------------YSWH----ENVAEELLGLKYLEVLEITFR 486 (700)
Q Consensus 441 --------~~~~l~~L~~L~l~~~~~~~~----------------------~~~~----~~~~~~l~~l~~L~~L~l~~~ 486 (700)
.+.++++|+.+++++|..... .... ...+. ....++|++|++++|
T Consensus 208 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~-~~~~~~L~~L~l~~n 286 (562)
T 3a79_B 208 LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ-FFWPRPVEYLNIYNL 286 (562)
T ss_dssp CCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHH-HHTTSSEEEEEEEEE
T ss_pred chhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHH-hhhcccccEEEEecc
Confidence 122345556665555421000 0000 00111 112235666666666
Q ss_pred cch-hhHhhh-----------------------------hc---------------------ccccccchhhhccccCCC
Q 005367 487 RFE-AYQTFL-----------------------------SS---------------------QKLRSCTQALFLHEFDRE 515 (700)
Q Consensus 487 ~~~-~~~~~~-----------------------------~~---------------------~~~~~~L~~L~l~~~~~~ 515 (700)
.+. .++... .. ....++|+.|+++++...
T Consensus 287 ~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~ 366 (562)
T 3a79_B 287 TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT 366 (562)
T ss_dssp EECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCC
T ss_pred EeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccc
Confidence 543 111100 00 033457888888887633
Q ss_pred ceeeecCcCccccccEEEEeccccccceee--cccccccccCCccccCCccEEeeecCcCccccc--ccccCCCCceEEe
Q 005367 516 ESIDVAGLADLEQLNTLIFYSCDWIKGLKI--DYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLT--FLVFAPNLKSISV 591 (700)
Q Consensus 516 ~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l 591 (700)
. .....+..+++|+.|++++|. +..++. ..+ ..+++|+.|++++|.....+| .+..+++|+.|++
T Consensus 367 ~-~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~---------~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l 435 (562)
T 3a79_B 367 D-SVFQGCSTLKRLQTLILQRNG-LKNFFKVALMT---------KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435 (562)
T ss_dssp T-TTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTT---------TTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEEC
T ss_pred c-chhhhhcccCCCCEEECCCCC-cCCcccchhhh---------cCCCCCCEEECCCCcCCCccChhhhcCcccCCEEEC
Confidence 3 223567788999999999876 332211 112 358999999999985433254 3778999999999
Q ss_pred eeccccccccccccCCCCCCccCCCCCCC-CccceeeccCcccccccccCCCCCCCccEEEEcCCCCCCCCCCC
Q 005367 592 CLCDDMEEIISAGEFDDIPEMTGIISSPF-AKLQRLRLEGLGRLKSIYWKPLPLPRLKELEVRGCDSLEKLPLD 664 (700)
Q Consensus 592 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~ 664 (700)
+++. ++.. ....+ ++|++|+++++ .++.++.....+++|++|+++++ +++.+|..
T Consensus 436 ~~n~-l~~~---------------~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~ 491 (562)
T 3a79_B 436 SSNM-LTGS---------------VFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDG 491 (562)
T ss_dssp CSSC-CCGG---------------GGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTT
T ss_pred CCCC-CCcc---------------hhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHH
Confidence 9975 3322 11233 68999999986 78889887778999999999998 78899865
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=1.2e-20 Score=193.12 Aligned_cols=256 Identities=16% Similarity=0.141 Sum_probs=184.0
Q ss_pred CceeEEEecCCCCcc--cccccccCCCcceEEEccC-CcccccCCcccccccccceeccccCccc-ccchhhhcCCCCCE
Q 005367 350 PHLLTLFLNRNPLTT--IAGGFFQSMPCLTVLKMSG-NETLRQLPMGISKLVSLQLLDISYTRVR-ELPEELKALVNLRC 425 (700)
Q Consensus 350 ~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~L~~-~~~~~~lp~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~ 425 (700)
.+++.|+++++.+.+ ..+..+..+++|++|++++ |...+.+|..++.+++|++|++++|++. .+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 589999999999987 6666789999999999995 7555678999999999999999999998 88989999999999
Q ss_pred EecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHhcCC-CcceEEEEEecchhhHhhhhcccccccc
Q 005367 426 LNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLK-YLEVLEITFRRFEAYQTFLSSQKLRSCT 504 (700)
Q Consensus 426 L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L 504 (700)
|++++|...+.+|.. ++++++|++|++++|.+.. ..+..+..++ +|+.|++++|.+.+...
T Consensus 130 L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~------~~p~~l~~l~~~L~~L~L~~N~l~~~~~----------- 191 (313)
T 1ogq_A 130 LDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISG------AIPDSYGSFSKLFTSMTISRNRLTGKIP----------- 191 (313)
T ss_dssp EECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEE------ECCGGGGCCCTTCCEEECCSSEEEEECC-----------
T ss_pred EeCCCCccCCcCChH-HhcCCCCCeEECcCCcccC------cCCHHHhhhhhcCcEEECcCCeeeccCC-----------
Confidence 999999766577776 8899999999999988742 3456678887 89999999887652110
Q ss_pred hhhhccccCCCceeeecCcCccccccEEEEeccccccceeecccccccccCCccccCCccEEeeecCcCcccccccccCC
Q 005367 505 QALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLTFLVFAP 584 (700)
Q Consensus 505 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~ 584 (700)
..+..++ |+.|++++|.... ..+..+. .+++|+.|+++++.....++.+..++
T Consensus 192 ----------------~~~~~l~-L~~L~Ls~N~l~~-~~~~~~~---------~l~~L~~L~L~~N~l~~~~~~~~~l~ 244 (313)
T 1ogq_A 192 ----------------PTFANLN-LAFVDLSRNMLEG-DASVLFG---------SDKNTQKIHLAKNSLAFDLGKVGLSK 244 (313)
T ss_dssp ----------------GGGGGCC-CSEEECCSSEEEE-CCGGGCC---------TTSCCSEEECCSSEECCBGGGCCCCT
T ss_pred ----------------hHHhCCc-ccEEECcCCcccC-cCCHHHh---------cCCCCCEEECCCCceeeecCcccccC
Confidence 1222333 7777776664222 2222222 46777777777765444455566777
Q ss_pred CCceEEeeeccccccccccccCCCCCCccCCCCCCCCccceeeccCcccccccccCCCCCCCccEEEEcCCCCCCCCCCC
Q 005367 585 NLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPFAKLQRLRLEGLGRLKSIYWKPLPLPRLKELEVRGCDSLEKLPLD 664 (700)
Q Consensus 585 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~ 664 (700)
+|++|+++++. ++..+ | ..+..+++|+.|+++++.-...+|.. ..+++|+.|++++++.+...|..
T Consensus 245 ~L~~L~Ls~N~-l~~~~--------p----~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~~ 310 (313)
T 1ogq_A 245 NLNGLDLRNNR-IYGTL--------P----QGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLP 310 (313)
T ss_dssp TCCEEECCSSC-CEECC--------C----GGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTTSS
T ss_pred CCCEEECcCCc-ccCcC--------C----hHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCCCC
Confidence 77777777753 22211 1 34566777777777775433355543 55777777777777777666644
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.83 E-value=1.2e-19 Score=205.33 Aligned_cols=127 Identities=24% Similarity=0.302 Sum_probs=112.6
Q ss_pred ccceEEEcCCCCCCCCc-cccccccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEcc
Q 005367 306 KEGFLVYAGSGLTEAPA-DVRGWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMS 382 (700)
Q Consensus 306 ~~~~~~~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~ 382 (700)
.-..+.+.++.+..+|. .+.++++|++|++++|.++.++ .|..+++|++|+|++|.++.+++..|.++++|++|+|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 34678889999998874 6899999999999999999987 48999999999999999999999989999999999999
Q ss_pred CCcccccCCc-ccccccccceeccccCccc--ccchhhhcCCCCCEEecccccC
Q 005367 383 GNETLRQLPM-GISKLVSLQLLDISYTRVR--ELPEELKALVNLRCLNLDWAGE 433 (700)
Q Consensus 383 ~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~ 433 (700)
+| .++.+|. .++++++|++|++++|.+. ..|..++.+++|++|++++|..
T Consensus 133 ~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 133 ET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp TS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 99 5666664 5899999999999999987 5678889999999999998853
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=1.1e-19 Score=187.12 Aligned_cols=226 Identities=22% Similarity=0.285 Sum_probs=135.9
Q ss_pred CCCcceEEEccCCcccccCCcccccccccceeccccCcccccchhhhcCCCCCEEecccccCccccchhhhcCCCcccee
Q 005367 372 SMPCLTVLKMSGNETLRQLPMGISKLVSLQLLDISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVL 451 (700)
Q Consensus 372 ~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L 451 (700)
...+++.|+|++| .++.+|..++.+++|++|++++|.+..+|..++.+++|++|++++|.. ..+|.. ++++++|+.|
T Consensus 79 ~~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l-~~lp~~-l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPL-RALPAS-IASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCC-CCCCGG-GGGCTTCCEE
T ss_pred cccceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCcc-ccCcHH-HhcCcCCCEE
Confidence 4578999999999 677899999999999999999999999999999999999999999854 578876 8889999999
Q ss_pred eccccCcccccCcc---cchHHHHhcCCCcceEEEEEecchhhHhhhhcccccccchhhhccccCCCceeeecCcCcccc
Q 005367 452 RMFATGLISFYSWH---ENVAEELLGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQ 528 (700)
Q Consensus 452 ~l~~~~~~~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~ 528 (700)
++++|......... ......+..+++|++|++++|.+..++ ..+..+++
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp----------------------------~~l~~l~~ 207 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP----------------------------ASIANLQN 207 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCC----------------------------GGGGGCTT
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcch----------------------------HhhcCCCC
Confidence 99887653321100 000011233555666666655433211 11333455
Q ss_pred ccEEEEeccccccceeecccccccccCCccccCCccEEeeecCcCccccc-ccccCCCCceEEeeeccccccccccccCC
Q 005367 529 LNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLT-FLVFAPNLKSISVCLCDDMEEIISAGEFD 607 (700)
Q Consensus 529 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~ 607 (700)
|++|++++|... .++.. + ..+++|++|++++|.....+| .++.+++|+.|++++|.....++
T Consensus 208 L~~L~L~~N~l~-~l~~~-l---------~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p------ 270 (328)
T 4fcg_A 208 LKSLKIRNSPLS-ALGPA-I---------HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP------ 270 (328)
T ss_dssp CCEEEEESSCCC-CCCGG-G---------GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC------
T ss_pred CCEEEccCCCCC-cCchh-h---------ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc------
Confidence 555555554422 11111 1 134555555555554444433 24555555555555554333321
Q ss_pred CCCCccCCCCCCCCccceeeccCcccccccccCCCCCCCccEEEE
Q 005367 608 DIPEMTGIISSPFAKLQRLRLEGLGRLKSIYWKPLPLPRLKELEV 652 (700)
Q Consensus 608 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i 652 (700)
..+..+++|+.|+|++|+.+..+|.....+++|+.+.+
T Consensus 271 -------~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 271 -------LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308 (328)
T ss_dssp -------TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEEC
T ss_pred -------hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeC
Confidence 13344555555555555555555554444555555544
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=194.25 Aligned_cols=238 Identities=23% Similarity=0.298 Sum_probs=180.9
Q ss_pred eEEEcCCCCCCCCccccccccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcc
Q 005367 309 FLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNET 386 (700)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 386 (700)
.+...+.++..+|..+. ++++.|++++|.++.++ .|..+++|++|++++|.++.+.+..|.++++|++|+|++| .
T Consensus 47 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~ 123 (440)
T 3zyj_A 47 KVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-R 123 (440)
T ss_dssp EEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-C
T ss_pred EEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-c
Confidence 35566778888988776 68999999999998876 6889999999999999999988888999999999999999 5
Q ss_pred cccCCc-ccccccccceeccccCcccccch-hhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCc
Q 005367 387 LRQLPM-GISKLVSLQLLDISYTRVRELPE-ELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSW 464 (700)
Q Consensus 387 ~~~lp~-~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 464 (700)
++.+|. .+..+++|++|++++|++..++. .+..+++|+.|++++|..+..++...+.++++|+.|++++|.+....
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-- 201 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-- 201 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--
Confidence 666664 58889999999999999997765 57889999999999987888888766889999999999998875421
Q ss_pred ccchHHHHhcCCCcceEEEEEecchhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEecccccccee
Q 005367 465 HENVAEELLGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGLK 544 (700)
Q Consensus 465 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~ 544 (700)
.+..+++|+.|++++|.+..+. ...+..+++|+.|++++|. +..+.
T Consensus 202 ------~~~~l~~L~~L~Ls~N~l~~~~---------------------------~~~~~~l~~L~~L~L~~n~-l~~~~ 247 (440)
T 3zyj_A 202 ------NLTPLIKLDELDLSGNHLSAIR---------------------------PGSFQGLMHLQKLWMIQSQ-IQVIE 247 (440)
T ss_dssp ------CCTTCSSCCEEECTTSCCCEEC---------------------------TTTTTTCTTCCEEECTTCC-CCEEC
T ss_pred ------ccCCCcccCEEECCCCccCccC---------------------------hhhhccCccCCEEECCCCc-eeEEC
Confidence 3667788888888777654321 1345556777777776665 33333
Q ss_pred ecccccccccCCccccCCccEEeeecCcCcccccc--cccCCCCceEEeeecc
Q 005367 545 IDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLTF--LVFAPNLKSISVCLCD 595 (700)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--l~~l~~L~~L~l~~~~ 595 (700)
+..+. .+++|++|+|++| .+..++. +..+++|+.|+|++++
T Consensus 248 ~~~~~---------~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 248 RNAFD---------NLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTSST---------TCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred hhhhc---------CCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 33332 4677777777776 4444442 5667777777776654
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=1.6e-19 Score=195.05 Aligned_cols=238 Identities=22% Similarity=0.288 Sum_probs=178.0
Q ss_pred eEEEcCCCCCCCCccccccccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcc
Q 005367 309 FLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNET 386 (700)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 386 (700)
.+...+.++..+|..+. ++++.|++++|.++.++ .|..+++|+.|++++|.++.+.+..|.++++|++|+|++| .
T Consensus 58 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~ 134 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-W 134 (452)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-C
T ss_pred EEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-c
Confidence 35566778888887765 68999999999998875 6889999999999999999988888999999999999999 5
Q ss_pred cccCCc-ccccccccceeccccCcccccch-hhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCc
Q 005367 387 LRQLPM-GISKLVSLQLLDISYTRVRELPE-ELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSW 464 (700)
Q Consensus 387 ~~~lp~-~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 464 (700)
++.+|. .+..+++|++|++++|++..+|. .+..+++|+.|++++|..+..++...+.++++|+.|++++|.+...
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--- 211 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--- 211 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC---
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc---
Confidence 666654 48889999999999999997776 5788999999999998888888877688999999999999887542
Q ss_pred ccchHHHHhcCCCcceEEEEEecchhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEecccccccee
Q 005367 465 HENVAEELLGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGLK 544 (700)
Q Consensus 465 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~ 544 (700)
..+..+++|+.|++++|.+..... ..+.++++|+.|++++|. +..+.
T Consensus 212 -----~~~~~l~~L~~L~Ls~N~l~~~~~---------------------------~~~~~l~~L~~L~L~~n~-l~~~~ 258 (452)
T 3zyi_A 212 -----PNLTPLVGLEELEMSGNHFPEIRP---------------------------GSFHGLSSLKKLWVMNSQ-VSLIE 258 (452)
T ss_dssp -----CCCTTCTTCCEEECTTSCCSEECG---------------------------GGGTTCTTCCEEECTTSC-CCEEC
T ss_pred -----ccccccccccEEECcCCcCcccCc---------------------------ccccCccCCCEEEeCCCc-CceEC
Confidence 136677888888888776554321 234455666666666654 23222
Q ss_pred ecccccccccCCccccCCccEEeeecCcCcccccc--cccCCCCceEEeeecc
Q 005367 545 IDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLTF--LVFAPNLKSISVCLCD 595 (700)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--l~~l~~L~~L~l~~~~ 595 (700)
+..+. .+++|+.|+|++| .+..++. +..+++|+.|+|++++
T Consensus 259 ~~~~~---------~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 259 RNAFD---------GLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTTTT---------TCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred HHHhc---------CCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 22222 4566777777665 3444432 4566667777666643
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=3.9e-19 Score=185.46 Aligned_cols=273 Identities=21% Similarity=0.232 Sum_probs=196.7
Q ss_pred ccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccC-Ccccccccccceeccc
Q 005367 328 EMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQL-PMGISKLVSLQLLDIS 406 (700)
Q Consensus 328 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~l~ 406 (700)
+.....+.+++.++.+|. .-.++|++|++++|.++.+++..+.++++|++|++++| .++.+ |..++.+++|++|+++
T Consensus 31 ~~~~~c~~~~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp CTTSEEECCSTTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECC
T ss_pred CCCeEeeCCCCCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECC
Confidence 334457778889999984 23369999999999999998877999999999999999 45554 5679999999999999
Q ss_pred cCcccccchh-hhcCCCCCEEecccccCccccch-hhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcceEEEE
Q 005367 407 YTRVRELPEE-LKALVNLRCLNLDWAGELVKVPQ-QLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEIT 484 (700)
Q Consensus 407 ~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 484 (700)
+|+++.+|.. ++.+++|++|++++|. +..+|. ..++++++|+.|++++|.... .-.+..+..+++|++|+++
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~-----~~~~~~~~~l~~L~~L~l~ 182 (353)
T 2z80_A 109 YNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFT-----KIQRKDFAGLTFLEELEID 182 (353)
T ss_dssp SSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCC-----EECTTTTTTCCEEEEEEEE
T ss_pred CCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCcccc-----ccCHHHccCCCCCCEEECC
Confidence 9999988877 8899999999999985 456776 448899999999999884222 1123457788999999999
Q ss_pred EecchhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEeccccccceeecccccccccCCccccCCcc
Q 005367 485 FRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLE 564 (700)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~ 564 (700)
+|.+.... ...+..+++|++|+++++.. ..++..... .+++|+
T Consensus 183 ~n~l~~~~---------------------------~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~---------~~~~L~ 225 (353)
T 2z80_A 183 ASDLQSYE---------------------------PKSLKSIQNVSHLILHMKQH-ILLLEIFVD---------VTSSVE 225 (353)
T ss_dssp ETTCCEEC---------------------------TTTTTTCSEEEEEEEECSCS-TTHHHHHHH---------HTTTEE
T ss_pred CCCcCccC---------------------------HHHHhccccCCeecCCCCcc-ccchhhhhh---------hccccc
Confidence 88754321 13455677888888887763 322222221 367888
Q ss_pred EEeeecCcCccccc-----ccccCCCCceEEeeeccccccccccccCCCCCCccCCCCCCCCccceeeccCccccccccc
Q 005367 565 EVTVRFCRKLKHLT-----FLVFAPNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPFAKLQRLRLEGLGRLKSIYW 639 (700)
Q Consensus 565 ~L~l~~~~~l~~l~-----~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 639 (700)
+|++++|. +...+ .....+.++.+++.++. +.+.. ...+| ..+..+++|+.|+++++ .++.++.
T Consensus 226 ~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~-l~~~~----l~~l~----~~l~~l~~L~~L~Ls~N-~l~~i~~ 294 (353)
T 2z80_A 226 CLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVK-ITDES----LFQVM----KLLNQISGLLELEFSRN-QLKSVPD 294 (353)
T ss_dssp EEEEESCB-CTTCCCC------CCCCCCEEEEESCB-CCHHH----HHHHH----HHHHTCTTCCEEECCSS-CCCCCCT
T ss_pred EEECCCCc-cccccccccccccccchhhcccccccc-ccCcc----hhhhH----HHHhcccCCCEEECCCC-CCCccCH
Confidence 88888874 33322 23356677788877753 22210 01112 23557788999999885 6777776
Q ss_pred CC-CCCCCccEEEEcCCC
Q 005367 640 KP-LPLPRLKELEVRGCD 656 (700)
Q Consensus 640 ~~-~~~~~L~~L~i~~C~ 656 (700)
.. ..+++|++|++++++
T Consensus 295 ~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 295 GIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp TTTTTCTTCCEEECCSSC
T ss_pred HHHhcCCCCCEEEeeCCC
Confidence 54 568889999998884
No 53
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=1.1e-18 Score=180.27 Aligned_cols=284 Identities=17% Similarity=0.148 Sum_probs=212.2
Q ss_pred ceEEEcCCCCCCCCccccccccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCc
Q 005367 308 GFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNE 385 (700)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 385 (700)
+.+...+.++..+|..+. +.++.|++++|.++.++ .+..+++|++|++++|.++...+..+..+++|++|++++|
T Consensus 34 ~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n- 110 (330)
T 1xku_A 34 RVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN- 110 (330)
T ss_dssp TEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-
T ss_pred eEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-
Confidence 346667778888887665 68999999999999987 4899999999999999999998888999999999999999
Q ss_pred ccccCCcccccccccceeccccCcccccch-hhhcCCCCCEEecccccCcc-ccchhhhcCCCccceeeccccCcccccC
Q 005367 386 TLRQLPMGISKLVSLQLLDISYTRVRELPE-ELKALVNLRCLNLDWAGELV-KVPQQLLSNFSRLRVLRMFATGLISFYS 463 (700)
Q Consensus 386 ~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~-~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 463 (700)
.++.+|..+. ++|++|++++|++..++. .+..+++|+.|++++|.... ......+.++++|+.|++++|.+.....
T Consensus 111 ~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~ 188 (330)
T 1xku_A 111 QLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ 188 (330)
T ss_dssp CCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS
T ss_pred cCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc
Confidence 6778887765 799999999999997765 48899999999999986532 1333348899999999999998754321
Q ss_pred cccchHHHHhcCCCcceEEEEEecchhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEeccccccce
Q 005367 464 WHENVAEELLGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGL 543 (700)
Q Consensus 464 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~ 543 (700)
.+ .++|++|++++|.+..... ......++|+.|+++++. +.......+..+++|+.|++++|.. ..+
T Consensus 189 -------~~--~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l-~~l 255 (330)
T 1xku_A 189 -------GL--PPSLTELHLDGNKITKVDA--ASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKL-VKV 255 (330)
T ss_dssp -------SC--CTTCSEEECTTSCCCEECT--GGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSSCC-SSC
T ss_pred -------cc--cccCCEEECCCCcCCccCH--HHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCCcC-ccC
Confidence 11 2789999999998766531 111234589999999886 4444445677889999999999863 333
Q ss_pred eecccccccccCCccccCCccEEeeecCcCcccccc--cc------cCCCCceEEeeeccccccccccccCCCCCCccCC
Q 005367 544 KIDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLTF--LV------FAPNLKSISVCLCDDMEEIISAGEFDDIPEMTGI 615 (700)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--l~------~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 615 (700)
+ .++ ..+++|++|++++| .++.++. +. ..+.|+.|++++++.....+ ...
T Consensus 256 p-~~l---------~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i-----------~~~ 313 (330)
T 1xku_A 256 P-GGL---------ADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI-----------QPS 313 (330)
T ss_dssp C-TTT---------TTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGS-----------CGG
T ss_pred C-hhh---------ccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCccccccc-----------Ccc
Confidence 2 222 35899999999998 4555542 21 34789999999865321110 113
Q ss_pred CCCCCCccceeeccCc
Q 005367 616 ISSPFAKLQRLRLEGL 631 (700)
Q Consensus 616 ~~~~~~~L~~L~l~~c 631 (700)
.+.+++.|+.++++++
T Consensus 314 ~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 314 TFRCVYVRAAVQLGNY 329 (330)
T ss_dssp GGTTCCCGGGEEC---
T ss_pred ccccccceeEEEeccc
Confidence 5667888899988864
No 54
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=5.1e-19 Score=182.88 Aligned_cols=283 Identities=18% Similarity=0.202 Sum_probs=212.1
Q ss_pred ceEEEcCCCCCCCCccccccccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCc
Q 005367 308 GFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNE 385 (700)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 385 (700)
..+...+.++..+|..+. ++++.|++++|.++.++ .+..+++|++|++++|.++...+..+..+++|++|++++|
T Consensus 36 ~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n- 112 (332)
T 2ft3_A 36 RVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN- 112 (332)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-
T ss_pred CEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-
Confidence 446677888888988774 79999999999999886 5899999999999999999998888999999999999999
Q ss_pred ccccCCcccccccccceeccccCcccccchh-hhcCCCCCEEecccccCcc-ccchhhhcCCCccceeeccccCcccccC
Q 005367 386 TLRQLPMGISKLVSLQLLDISYTRVRELPEE-LKALVNLRCLNLDWAGELV-KVPQQLLSNFSRLRVLRMFATGLISFYS 463 (700)
Q Consensus 386 ~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~-~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 463 (700)
.++.+|..+. ++|++|++++|++..+|.. +..+++|+.|++++|.... ..+...++.+ +|+.|++++|.+....
T Consensus 113 ~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~- 188 (332)
T 2ft3_A 113 HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIP- 188 (332)
T ss_dssp CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC-
T ss_pred cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccC-
Confidence 6778887766 8999999999999987764 8899999999999986532 1333336677 9999999999875421
Q ss_pred cccchHHHHhcCCCcceEEEEEecchhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEeccccccce
Q 005367 464 WHENVAEELLGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGL 543 (700)
Q Consensus 464 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~ 543 (700)
..+ .++|++|++++|.+..... ......++|+.|+++++. +.......+..+++|+.|++++|. +..+
T Consensus 189 ------~~~--~~~L~~L~l~~n~i~~~~~--~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~l 256 (332)
T 2ft3_A 189 ------KDL--PETLNELHLDHNKIQAIEL--EDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNK-LSRV 256 (332)
T ss_dssp ------SSS--CSSCSCCBCCSSCCCCCCT--TSSTTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCSSC-CCBC
T ss_pred ------ccc--cCCCCEEECCCCcCCccCH--HHhcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCCCc-Ceec
Confidence 111 2789999999998876542 112234589999999885 333333457788999999999886 3333
Q ss_pred eecccccccccCCccccCCccEEeeecCcCcccccc--cc------cCCCCceEEeeeccccc-cccccccCCCCCCccC
Q 005367 544 KIDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLTF--LV------FAPNLKSISVCLCDDME-EIISAGEFDDIPEMTG 614 (700)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--l~------~l~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~~ 614 (700)
+.. + ..+++|++|+++++ .++.++. +. ..++|+.|++++++... ++..
T Consensus 257 p~~-l---------~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~------------ 313 (332)
T 2ft3_A 257 PAG-L---------PDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP------------ 313 (332)
T ss_dssp CTT-G---------GGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG------------
T ss_pred Chh-h---------hcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCc------------
Confidence 322 2 35899999999997 4555542 22 25789999999876321 1111
Q ss_pred CCCCCCCccceeeccCcc
Q 005367 615 IISSPFAKLQRLRLEGLG 632 (700)
Q Consensus 615 ~~~~~~~~L~~L~l~~c~ 632 (700)
..+.++++|+.|+++++.
T Consensus 314 ~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 314 ATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGGTTBCCSTTEEC----
T ss_pred ccccccchhhhhhccccc
Confidence 356788899999998764
No 55
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.80 E-value=1.2e-18 Score=187.27 Aligned_cols=277 Identities=23% Similarity=0.257 Sum_probs=140.4
Q ss_pred EEEcCCCCCCCCccccccccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCccccc
Q 005367 310 LVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQ 389 (700)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 389 (700)
+.+.++.+..+|.. +++++.|++++|.++.++.+. ++|++|++++|.++.++ . +..+++|++|++++| .++.
T Consensus 96 L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~lp-~-~~~l~~L~~L~l~~N-~l~~ 167 (454)
T 1jl5_A 96 LVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLP-E-LQNSSFLKIIDVDNN-SLKK 167 (454)
T ss_dssp EECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCC-C-CTTCTTCCEEECCSS-CCSC
T ss_pred EEccCCcCCccccc---cCCCcEEECCCCccCcccCCC--CCCCEEECcCCCCCCCc-c-cCCCCCCCEEECCCC-cCcc
Confidence 34444444444432 134555555555554444322 45555555555555433 2 555555555555555 3444
Q ss_pred CCcccccccccceeccccCcccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchH
Q 005367 390 LPMGISKLVSLQLLDISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVA 469 (700)
Q Consensus 390 lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 469 (700)
+|..+ .+|++|++++|++..+| .++.+++|+.|++++|. +..+|.. .++|+.|++++|.+.. .+
T Consensus 168 lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~----~~~L~~L~l~~n~l~~-------lp 231 (454)
T 1jl5_A 168 LPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPDL----PLSLESIVAGNNILEE-------LP 231 (454)
T ss_dssp CCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCCC----CTTCCEEECCSSCCSS-------CC
T ss_pred cCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc-CCcCCCC----cCcccEEECcCCcCCc-------cc
Confidence 44332 35555555555555554 35555555555555553 2233331 1355555555554431 11
Q ss_pred HHHhcCCCcceEEEEEecchhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEeccccccceeecccc
Q 005367 470 EELLGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGLKIDYKD 549 (700)
Q Consensus 470 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~ 549 (700)
.++.+++|+.|++++|.+..++. ...+|+.|+++++.-.. .+ . .+++|+.|++++|. +..++ .
T Consensus 232 -~~~~l~~L~~L~l~~N~l~~l~~------~~~~L~~L~l~~N~l~~-l~--~--~~~~L~~L~ls~N~-l~~l~--~-- 294 (454)
T 1jl5_A 232 -ELQNLPFLTTIYADNNLLKTLPD------LPPSLEALNVRDNYLTD-LP--E--LPQSLTFLDVSENI-FSGLS--E-- 294 (454)
T ss_dssp -CCTTCTTCCEEECCSSCCSSCCS------CCTTCCEEECCSSCCSC-CC--C--CCTTCCEEECCSSC-CSEES--C--
T ss_pred -ccCCCCCCCEEECCCCcCCcccc------cccccCEEECCCCcccc-cC--c--ccCcCCEEECcCCc-cCccc--C--
Confidence 25566667777776666554332 12466666666654211 11 1 12566666666654 22110 0
Q ss_pred cccccCCccccCCccEEeeecCcCcccccccccC-CCCceEEeeeccccccccccccCCCCCCccCCCCCCCCccceeec
Q 005367 550 MVQKSRQPYVFRSLEEVTVRFCRKLKHLTFLVFA-PNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPFAKLQRLRL 628 (700)
Q Consensus 550 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 628 (700)
..++|+.|++++| .+..++ .+ ++|+.|+++++. ++.+ | ..+++|++|++
T Consensus 295 ---------~~~~L~~L~l~~N-~l~~i~---~~~~~L~~L~Ls~N~-l~~l---------p-------~~~~~L~~L~L 344 (454)
T 1jl5_A 295 ---------LPPNLYYLNASSN-EIRSLC---DLPPSLEELNVSNNK-LIEL---------P-------ALPPRLERLIA 344 (454)
T ss_dssp ---------CCTTCCEEECCSS-CCSEEC---CCCTTCCEEECCSSC-CSCC---------C-------CCCTTCCEEEC
T ss_pred ---------cCCcCCEEECcCC-cCCccc---CCcCcCCEEECCCCc-cccc---------c-------ccCCcCCEEEC
Confidence 1256666666665 333322 22 467777776642 3322 1 12567777777
Q ss_pred cCcccccccccCCCCCCCccEEEEcCCCCCCCCC
Q 005367 629 EGLGRLKSIYWKPLPLPRLKELEVRGCDSLEKLP 662 (700)
Q Consensus 629 ~~c~~l~~l~~~~~~~~~L~~L~i~~C~~L~~lp 662 (700)
++| .++.++. .+++|++|+++++ +++.+|
T Consensus 345 ~~N-~l~~lp~---~l~~L~~L~L~~N-~l~~l~ 373 (454)
T 1jl5_A 345 SFN-HLAEVPE---LPQNLKQLHVEYN-PLREFP 373 (454)
T ss_dssp CSS-CCSCCCC---CCTTCCEEECCSS-CCSSCC
T ss_pred CCC-ccccccc---hhhhccEEECCCC-CCCcCC
Confidence 765 5566654 4577777777776 455544
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=2.6e-18 Score=190.38 Aligned_cols=254 Identities=24% Similarity=0.229 Sum_probs=184.8
Q ss_pred cceEEEcCCCCCCCCccccccccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcc
Q 005367 307 EGFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNET 386 (700)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 386 (700)
...+.+.++++..+|..+. ++|+.|++++|.++.+|. .+++|++|++++|.++.++. .+++|++|++++| .
T Consensus 42 l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N-~ 112 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSN-P 112 (622)
T ss_dssp CCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSC-C
T ss_pred CcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCC-c
Confidence 4567888899999988776 799999999999999887 67999999999999887665 6789999999999 6
Q ss_pred cccCCcccccccccceeccccCcccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCccc
Q 005367 387 LRQLPMGISKLVSLQLLDISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHE 466 (700)
Q Consensus 387 ~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 466 (700)
++.+|. .+++|++|++++|+++.+|.. +++|++|++++|. +..+|. .+++|+.|++++|.+...
T Consensus 113 l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~----~~~~L~~L~L~~N~l~~l----- 176 (622)
T 3g06_A 113 LTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPA----LPSELCKLWAYNNQLTSL----- 176 (622)
T ss_dssp CCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSCC-----
T ss_pred CCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCC----ccCCCCEEECCCCCCCCC-----
Confidence 777776 568899999999999988864 4899999999884 455654 357899999998887542
Q ss_pred chHHHHhcCCCcceEEEEEecchhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEeccccccceeec
Q 005367 467 NVAEELLGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGLKID 546 (700)
Q Consensus 467 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~ 546 (700)
+ ..+++|+.|++++|.+..++. ..++|+.|.+.++... ..+ . .+++|+.|++++|. +..++
T Consensus 177 --~---~~~~~L~~L~Ls~N~l~~l~~------~~~~L~~L~L~~N~l~-~l~--~--~~~~L~~L~Ls~N~-L~~lp-- 237 (622)
T 3g06_A 177 --P---MLPSGLQELSVSDNQLASLPT------LPSELYKLWAYNNRLT-SLP--A--LPSGLKELIVSGNR-LTSLP-- 237 (622)
T ss_dssp --C---CCCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCS-SCC--C--CCTTCCEEECCSSC-CSCCC--
T ss_pred --c---ccCCCCcEEECCCCCCCCCCC------ccchhhEEECcCCccc-ccC--C--CCCCCCEEEccCCc-cCcCC--
Confidence 1 446889999999888765443 2346777777766422 111 1 13677777777664 33222
Q ss_pred ccccccccCCccccCCccEEeeecCcCcccccccccCCCCceEEeeeccccccccccccCCCCCCccCCCCCCCCcccee
Q 005367 547 YKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLTFLVFAPNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPFAKLQRL 626 (700)
Q Consensus 547 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 626 (700)
..+++|++|++++| .++.+|. .+++|+.|++++| .++.+ | ..+..+++|+.|
T Consensus 238 -----------~~l~~L~~L~Ls~N-~L~~lp~--~~~~L~~L~Ls~N-~L~~l---------p----~~l~~l~~L~~L 289 (622)
T 3g06_A 238 -----------VLPSELKELMVSGN-RLTSLPM--LPSGLLSLSVYRN-QLTRL---------P----ESLIHLSSETTV 289 (622)
T ss_dssp -----------CCCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS-CCCSC---------C----GGGGGSCTTCEE
T ss_pred -----------CCCCcCcEEECCCC-CCCcCCc--ccccCcEEeCCCC-CCCcC---------C----HHHhhccccCEE
Confidence 13567777777776 5556655 5677777777775 33333 2 245667777777
Q ss_pred eccCcc
Q 005367 627 RLEGLG 632 (700)
Q Consensus 627 ~l~~c~ 632 (700)
+|++++
T Consensus 290 ~L~~N~ 295 (622)
T 3g06_A 290 NLEGNP 295 (622)
T ss_dssp ECCSCC
T ss_pred EecCCC
Confidence 777654
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=4.3e-19 Score=181.25 Aligned_cols=169 Identities=22% Similarity=0.296 Sum_probs=99.3
Q ss_pred EEEcCCCCCCCCccccccccceeeeeccccccCCCC--CCCCCceeEEEecCCCCcccc--cccccCCCcceEEEccCCc
Q 005367 310 LVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLPT--IPTCPHLLTLFLNRNPLTTIA--GGFFQSMPCLTVLKMSGNE 385 (700)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~L~~~~ 385 (700)
+...+.++..+|..+. ++++.|++++|.++.++. +..+++|++|++++|.++... +..+..+++|++|++++|
T Consensus 12 l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n- 88 (306)
T 2z66_A 12 IRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN- 88 (306)
T ss_dssp EECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-
T ss_pred EEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-
Confidence 4445556666666543 567777777777776663 566777777777777665432 223445677777777777
Q ss_pred ccccCCcccccccccceeccccCcccccch--hhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccC
Q 005367 386 TLRQLPMGISKLVSLQLLDISYTRVRELPE--ELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYS 463 (700)
Q Consensus 386 ~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 463 (700)
.+..+|..+..+++|++|++++|++..++. .+..+++|++|++++|......+. .+.++++|+.|++++|.+...
T Consensus 89 ~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~-- 165 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQEN-- 165 (306)
T ss_dssp SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT-TTTTCTTCCEEECTTCEEGGG--
T ss_pred ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh-hcccCcCCCEEECCCCccccc--
Confidence 455566666667777777777776665543 466667777777776643333333 356666677776666554220
Q ss_pred cccchHHHHhcCCCcceEEEEEec
Q 005367 464 WHENVAEELLGLKYLEVLEITFRR 487 (700)
Q Consensus 464 ~~~~~~~~l~~l~~L~~L~l~~~~ 487 (700)
..+..+..+++|+.|++++|.
T Consensus 166 ---~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 166 ---FLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ---EECSCCTTCTTCCEEECTTSC
T ss_pred ---cchhHHhhCcCCCEEECCCCC
Confidence 112233444555555554443
No 58
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.78 E-value=3.2e-18 Score=183.97 Aligned_cols=285 Identities=21% Similarity=0.212 Sum_probs=194.5
Q ss_pred cceEEEcCCCCCCCCccccccccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcc
Q 005367 307 EGFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNET 386 (700)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 386 (700)
-..+.+.++.+..+|... ++|+.|++++|.++.+|.+..+++|++|++++|.+++++.. ..+|++|++++| .
T Consensus 113 L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n-~ 184 (454)
T 1jl5_A 113 LKSLLVDNNNLKALSDLP---PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNN-Q 184 (454)
T ss_dssp CCEEECCSSCCSCCCSCC---TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSS-C
T ss_pred CcEEECCCCccCcccCCC---CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCC-c
Confidence 355667777777765422 68999999999999999999999999999999998875542 358999999999 6
Q ss_pred cccCCcccccccccceeccccCcccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCccc
Q 005367 387 LRQLPMGISKLVSLQLLDISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHE 466 (700)
Q Consensus 387 ~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 466 (700)
++.+| .++.+++|++|++++|++..+|... ++|+.|++++|. +..+|. ++++++|+.|++++|.+.....
T Consensus 185 l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~-l~~lp~--~~~l~~L~~L~l~~N~l~~l~~--- 254 (454)
T 1jl5_A 185 LEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNI-LEELPE--LQNLPFLTTIYADNNLLKTLPD--- 254 (454)
T ss_dssp CSSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSC-CSSCCC--CTTCTTCCEEECCSSCCSSCCS---
T ss_pred CCcCc-cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCc-CCcccc--cCCCCCCCEEECCCCcCCcccc---
Confidence 67777 6899999999999999998877543 589999999985 457774 8899999999999988754211
Q ss_pred chHHHHhcCCCcceEEEEEecchhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEeccccccceeec
Q 005367 467 NVAEELLGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGLKID 546 (700)
Q Consensus 467 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~ 546 (700)
.+++|+.|++++|.+..++.. .++|+.|+++++.- ...+ .+ .++|+.|++++|.. ..+
T Consensus 255 -------~~~~L~~L~l~~N~l~~l~~~------~~~L~~L~ls~N~l-~~l~--~~--~~~L~~L~l~~N~l-~~i--- 312 (454)
T 1jl5_A 255 -------LPPSLEALNVRDNYLTDLPEL------PQSLTFLDVSENIF-SGLS--EL--PPNLYYLNASSNEI-RSL--- 312 (454)
T ss_dssp -------CCTTCCEEECCSSCCSCCCCC------CTTCCEEECCSSCC-SEES--CC--CTTCCEEECCSSCC-SEE---
T ss_pred -------cccccCEEECCCCcccccCcc------cCcCCEEECcCCcc-Cccc--Cc--CCcCCEEECcCCcC-Ccc---
Confidence 247899999999988765432 35888999988752 2211 12 26899999987753 211
Q ss_pred ccccccccCCccccCCccEEeeecCcCcccccccccCCCCceEEeeeccccccccccccCCCCCCccCCCCCCCCcccee
Q 005367 547 YKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLTFLVFAPNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPFAKLQRL 626 (700)
Q Consensus 547 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 626 (700)
. ...++|++|+++++ .+..+|.. +++|+.|++++| .++.+ | . .+++|++|
T Consensus 313 --~--------~~~~~L~~L~Ls~N-~l~~lp~~--~~~L~~L~L~~N-~l~~l---------p-----~--~l~~L~~L 362 (454)
T 1jl5_A 313 --C--------DLPPSLEELNVSNN-KLIELPAL--PPRLERLIASFN-HLAEV---------P-----E--LPQNLKQL 362 (454)
T ss_dssp --C--------CCCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSS-CCSCC---------C-----C--CCTTCCEE
T ss_pred --c--------CCcCcCCEEECCCC-cccccccc--CCcCCEEECCCC-ccccc---------c-----c--hhhhccEE
Confidence 1 01358899999887 45555532 688999999886 33322 2 1 46789999
Q ss_pred eccCccccc--ccccCCCCC-------------CCccEEEEcCCCCCCCCC
Q 005367 627 RLEGLGRLK--SIYWKPLPL-------------PRLKELEVRGCDSLEKLP 662 (700)
Q Consensus 627 ~l~~c~~l~--~l~~~~~~~-------------~~L~~L~i~~C~~L~~lp 662 (700)
+++++.-.. .+|.....+ ++|++|+++++ +++.+|
T Consensus 363 ~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N-~l~~~~ 412 (454)
T 1jl5_A 363 HVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN-PLREFP 412 (454)
T ss_dssp ECCSSCCSSCCCCCTTCCEEECCC---------------------------
T ss_pred ECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCC-cCCccc
Confidence 998753222 344333333 78999999887 455443
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=3.3e-18 Score=174.64 Aligned_cols=148 Identities=22% Similarity=0.258 Sum_probs=109.0
Q ss_pred eeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccC---Ccccccccccceecccc
Q 005367 331 RRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQL---PMGISKLVSLQLLDISY 407 (700)
Q Consensus 331 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l---p~~~~~l~~L~~L~l~~ 407 (700)
+.++..++.++.+|. .-.++|++|++++|.++.+++..+.++++|++|++++| .++.. +..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCC
Confidence 356777778888884 23378999999999998888887889999999999998 44433 55667788999999999
Q ss_pred CcccccchhhhcCCCCCEEecccccCccccch-hhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcceEEEEEe
Q 005367 408 TRVRELPEELKALVNLRCLNLDWAGELVKVPQ-QLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEITFR 486 (700)
Q Consensus 408 ~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 486 (700)
|.+..+|..+..+++|++|++++|.. ..++. ..+.++++|+.|++++|.+... .+..+..+++|++|++++|
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~L~l~~n 160 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTRVA------FNGIFNGLSSLEVLKMAGN 160 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEE-ESSTTTTTTTTCTTCCEEECTTSCCEEC------STTTTTTCTTCCEEECTTC
T ss_pred CccccChhhcCCCCCCCEEECCCCcc-cccccchhhhhccCCCEEECCCCcCCcc------chhhcccCcCCCEEECCCC
Confidence 98888888888899999999988753 44443 3477888888888887765321 2223445556666665554
Q ss_pred c
Q 005367 487 R 487 (700)
Q Consensus 487 ~ 487 (700)
.
T Consensus 161 ~ 161 (306)
T 2z66_A 161 S 161 (306)
T ss_dssp E
T ss_pred c
Confidence 4
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=8.4e-19 Score=177.05 Aligned_cols=146 Identities=25% Similarity=0.432 Sum_probs=83.0
Q ss_pred EEEcCCCCCCCCccccccccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCccc
Q 005367 310 LVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETL 387 (700)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 387 (700)
+...+.++..+|..+. ++++.|++++|.++.++ .+..+++|++|++++|.++...+..+..+++|++|++++|..+
T Consensus 16 ~~c~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l 93 (285)
T 1ozn_A 16 TSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93 (285)
T ss_dssp EECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred EEcCcCCcccCCcCCC--CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc
Confidence 3344555555554432 46666666666666555 3556666666666666666655555666666666666666434
Q ss_pred ccC-CcccccccccceeccccCccccc-chhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCc
Q 005367 388 RQL-PMGISKLVSLQLLDISYTRVREL-PEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGL 458 (700)
Q Consensus 388 ~~l-p~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~ 458 (700)
+.+ |..+..+++|++|++++|++..+ |..+..+++|++|++++|. +..++...++++++|+.|++++|.+
T Consensus 94 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l 165 (285)
T 1ozn_A 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRI 165 (285)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcc
Confidence 444 44555666666666666666644 3345556666666666553 3344443355566666666665544
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=2.2e-18 Score=186.10 Aligned_cols=243 Identities=16% Similarity=0.170 Sum_probs=186.6
Q ss_pred ceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccccccccceeccccCc
Q 005367 330 GRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQLLDISYTR 409 (700)
Q Consensus 330 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 409 (700)
...++..+..++.+|. .-.++++.|++++|.++.+.+..|.++++|++|+|++|......+..+.++++|++|++++|+
T Consensus 56 ~~~v~c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SCEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcEEEECCCCcCccCC-CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 4567777778888884 223799999999999999988889999999999999994433445778999999999999999
Q ss_pred ccccchh-hhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcceEEEEEecc
Q 005367 410 VRELPEE-LKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEITFRRF 488 (700)
Q Consensus 410 l~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 488 (700)
++.+|.. +..+++|++|++++|. +..++...+.++++|+.|++++|+.... -....+..+++|+.|++++|.+
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~-----i~~~~~~~l~~L~~L~L~~n~l 208 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEY-----ISEGAFEGLFNLKYLNLGMCNI 208 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCE-----ECTTTTTTCTTCCEEECTTSCC
T ss_pred CCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccc-----cChhhccCCCCCCEEECCCCcc
Confidence 9988765 7889999999999985 5677776689999999999998543221 1122466788888888887754
Q ss_pred hhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEeccccccceeecccccccccCCccccCCccEEee
Q 005367 489 EAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEVTV 568 (700)
Q Consensus 489 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l 568 (700)
..+ ..+..+++|+.|++++|. +..+.+..+. .+++|++|++
T Consensus 209 ~~~-----------------------------~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~---------~l~~L~~L~L 249 (452)
T 3zyi_A 209 KDM-----------------------------PNLTPLVGLEELEMSGNH-FPEIRPGSFH---------GLSSLKKLWV 249 (452)
T ss_dssp SSC-----------------------------CCCTTCTTCCEEECTTSC-CSEECGGGGT---------TCTTCCEEEC
T ss_pred ccc-----------------------------ccccccccccEEECcCCc-CcccCccccc---------CccCCCEEEe
Confidence 332 135567899999999886 4444444443 5899999999
Q ss_pred ecCcCcccc--cccccCCCCceEEeeeccccccccccccCCCCCCccCCCCCCCCccceeeccCcc
Q 005367 569 RFCRKLKHL--TFLVFAPNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPFAKLQRLRLEGLG 632 (700)
Q Consensus 569 ~~~~~l~~l--~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 632 (700)
++|. +..+ ..+..+++|+.|+|+++ .++.+.. ..+..+++|+.|+|++++
T Consensus 250 ~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~------------~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 250 MNSQ-VSLIERNAFDGLASLVELNLAHN-NLSSLPH------------DLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCT------------TSSTTCTTCCEEECCSSC
T ss_pred CCCc-CceECHHHhcCCCCCCEEECCCC-cCCccCh------------HHhccccCCCEEEccCCC
Confidence 9984 4443 34788999999999996 4554433 456788999999998743
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=2.6e-18 Score=184.86 Aligned_cols=242 Identities=17% Similarity=0.245 Sum_probs=187.7
Q ss_pred ceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccC-CcccccccccceeccccC
Q 005367 330 GRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQL-PMGISKLVSLQLLDISYT 408 (700)
Q Consensus 330 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~l~~~ 408 (700)
...++..+..++.+|. .-.++++.|++++|.++.+.+..|.++++|++|+|++|. ++.+ +..+..+++|++|++++|
T Consensus 45 ~~~v~c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCC
Confidence 4567777788888884 223789999999999999998889999999999999994 5554 467899999999999999
Q ss_pred cccccch-hhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcceEEEEEec
Q 005367 409 RVRELPE-ELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEITFRR 487 (700)
Q Consensus 409 ~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 487 (700)
+++.+|. .+..+++|++|++++|. +..++...+.++++|+.|++++|+.... -....+..+++|+.|++++|.
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~-----i~~~~~~~l~~L~~L~L~~n~ 196 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSY-----ISEGAFEGLSNLRYLNLAMCN 196 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCE-----ECTTTTTTCSSCCEEECTTSC
T ss_pred cCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcce-----eCcchhhcccccCeecCCCCc
Confidence 9998876 48899999999999985 5677776689999999999998653221 112246778889999888775
Q ss_pred chhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEeccccccceeecccccccccCCccccCCccEEe
Q 005367 488 FEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEVT 567 (700)
Q Consensus 488 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~ 567 (700)
+..+ ..+.++++|+.|++++|. +..+.+..+. .+++|++|+
T Consensus 197 l~~~-----------------------------~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~---------~l~~L~~L~ 237 (440)
T 3zyj_A 197 LREI-----------------------------PNLTPLIKLDELDLSGNH-LSAIRPGSFQ---------GLMHLQKLW 237 (440)
T ss_dssp CSSC-----------------------------CCCTTCSSCCEEECTTSC-CCEECTTTTT---------TCTTCCEEE
T ss_pred Cccc-----------------------------cccCCCcccCEEECCCCc-cCccChhhhc---------cCccCCEEE
Confidence 4422 135667899999999885 5544444443 689999999
Q ss_pred eecCcCccccc--ccccCCCCceEEeeeccccccccccccCCCCCCccCCCCCCCCccceeeccCcc
Q 005367 568 VRFCRKLKHLT--FLVFAPNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPFAKLQRLRLEGLG 632 (700)
Q Consensus 568 l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 632 (700)
++++ .+..++ .+..+++|+.|+|+++ .++.+.. ..+..+++|+.|+|++++
T Consensus 238 L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~------------~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 238 MIQS-QIQVIERNAFDNLQSLVEINLAHN-NLTLLPH------------DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CTTC-CCCEECTTSSTTCTTCCEEECTTS-CCCCCCT------------TTTSSCTTCCEEECCSSC
T ss_pred CCCC-ceeEEChhhhcCCCCCCEEECCCC-CCCccCh------------hHhccccCCCEEEcCCCC
Confidence 9998 444443 4788999999999996 4554433 456788999999998643
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=1.4e-18 Score=175.49 Aligned_cols=219 Identities=18% Similarity=0.218 Sum_probs=167.5
Q ss_pred eeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccC-CcccccccccceeccccCc
Q 005367 331 RRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQL-PMGISKLVSLQLLDISYTR 409 (700)
Q Consensus 331 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~l~~~~ 409 (700)
+.++..++.++.+|. ...++|+.|++++|.++..++..+..+++|++|++++|. ++.+ |..++.+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCC
Confidence 567778888888874 345799999999999999988889999999999999994 5544 7789999999999999997
Q ss_pred -cccc-chhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcceEEEEEec
Q 005367 410 -VREL-PEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEITFRR 487 (700)
Q Consensus 410 -l~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 487 (700)
+..+ |..+..+++|++|++++|.. ..++...+.++++|++|++++|.+... .+..+..+++|+.|++++|.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~L~l~~n~ 164 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQAL------PDDTFRDLGNLTHLFLHGNR 164 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECCSSCCCCC------CTTTTTTCTTCCEEECCSSC
T ss_pred CccccCHHHhcCCcCCCEEECCCCcC-CEECHhHhhCCcCCCEEECCCCccccc------CHhHhccCCCccEEECCCCc
Confidence 8876 66788999999999999864 455444488999999999999887432 12336778889999888776
Q ss_pred chhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEeccccccceeecccccccccCCccccCCccEEe
Q 005367 488 FEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEVT 567 (700)
Q Consensus 488 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~ 567 (700)
+..+. ...+..+++|++|++++|. +....+..+. .+++|++|+
T Consensus 165 l~~~~---------------------------~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~---------~l~~L~~L~ 207 (285)
T 1ozn_A 165 ISSVP---------------------------ERAFRGLHSLDRLLLHQNR-VAHVHPHAFR---------DLGRLMTLY 207 (285)
T ss_dssp CCEEC---------------------------TTTTTTCTTCCEEECCSSC-CCEECTTTTT---------TCTTCCEEE
T ss_pred ccccC---------------------------HHHhcCccccCEEECCCCc-ccccCHhHcc---------CcccccEee
Confidence 44322 1235667888888888876 3333333333 578899999
Q ss_pred eecCcCccccc--ccccCCCCceEEeeeccc
Q 005367 568 VRFCRKLKHLT--FLVFAPNLKSISVCLCDD 596 (700)
Q Consensus 568 l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~ 596 (700)
+++| .+..++ .+..+++|+.|++++++-
T Consensus 208 l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 208 LFAN-NLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp CCSS-CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred CCCC-cCCcCCHHHcccCcccCEEeccCCCc
Confidence 9887 444554 377888899999888653
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.76 E-value=1.8e-19 Score=184.83 Aligned_cols=125 Identities=17% Similarity=0.187 Sum_probs=59.9
Q ss_pred CCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccccccccceeccccCcccccchhhhcCCCCCEEe
Q 005367 348 TCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQLLDISYTRVRELPEELKALVNLRCLN 427 (700)
Q Consensus 348 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~ 427 (700)
.+++|+.|++++|.++..++..+..+++|++|+|++| .++..+. +..+++|++|++++|+++.++ .+++|++|+
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~ 105 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELL----VGPSIETLH 105 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCSSEEEEEE----ECTTCCEEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcCCcccccc----CCCCcCEEE
Confidence 3445555555555555555444555555555555555 2333322 455555555555555555443 224555555
Q ss_pred cccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcceEEEEEecc
Q 005367 428 LDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEITFRRF 488 (700)
Q Consensus 428 l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 488 (700)
+++|. +..++.. .+++|+.|++++|.+... .+..+..+++|+.|++++|.+
T Consensus 106 l~~n~-l~~~~~~---~~~~L~~L~l~~N~l~~~------~~~~~~~l~~L~~L~Ls~N~l 156 (317)
T 3o53_A 106 AANNN-ISRVSCS---RGQGKKNIYLANNKITML------RDLDEGCRSRVQYLDLKLNEI 156 (317)
T ss_dssp CCSSC-CSEEEEC---CCSSCEEEECCSSCCCSG------GGBCTGGGSSEEEEECTTSCC
T ss_pred CCCCc-cCCcCcc---ccCCCCEEECCCCCCCCc------cchhhhccCCCCEEECCCCCC
Confidence 55553 2233221 244555555555544221 111234455555555555443
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.74 E-value=2.8e-17 Score=182.05 Aligned_cols=256 Identities=22% Similarity=0.198 Sum_probs=199.4
Q ss_pred ccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccccccccceecccc
Q 005367 328 EMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQLLDISY 407 (700)
Q Consensus 328 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~ 407 (700)
..++.++++++.++.+|.... ++|+.|++++|.++.++. .+++|++|+|++| .++.+|. .+++|++|++++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECS
T ss_pred CCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcC
Confidence 468899999999999985222 899999999999987766 5789999999999 5778886 679999999999
Q ss_pred CcccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcceEEEEEec
Q 005367 408 TRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEITFRR 487 (700)
Q Consensus 408 ~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 487 (700)
|+++.+|. .+++|+.|++++|. +..+|. .+++|++|++++|.+.... ..+++|+.|++++|.
T Consensus 111 N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~----~l~~L~~L~Ls~N~l~~l~----------~~~~~L~~L~L~~N~ 172 (622)
T 3g06_A 111 NPLTHLPA---LPSGLCKLWIFGNQ-LTSLPV----LPPGLQELSVSDNQLASLP----------ALPSELCKLWAYNNQ 172 (622)
T ss_dssp CCCCCCCC---CCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSCCC----------CCCTTCCEEECCSSC
T ss_pred CcCCCCCC---CCCCcCEEECCCCC-CCcCCC----CCCCCCEEECcCCcCCCcC----------CccCCCCEEECCCCC
Confidence 99999887 67899999999885 566776 3489999999999875421 135789999999998
Q ss_pred chhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEeccccccceeecccccccccCCccccCCccEEe
Q 005367 488 FEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEVT 567 (700)
Q Consensus 488 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~ 567 (700)
+..++ ...++|+.|+++++.. ...+ . .+++|+.|++++|. +..++ ..+++|++|+
T Consensus 173 l~~l~------~~~~~L~~L~Ls~N~l-~~l~--~--~~~~L~~L~L~~N~-l~~l~-------------~~~~~L~~L~ 227 (622)
T 3g06_A 173 LTSLP------MLPSGLQELSVSDNQL-ASLP--T--LPSELYKLWAYNNR-LTSLP-------------ALPSGLKELI 227 (622)
T ss_dssp CSCCC------CCCTTCCEEECCSSCC-SCCC--C--CCTTCCEEECCSSC-CSSCC-------------CCCTTCCEEE
T ss_pred CCCCc------ccCCCCcEEECCCCCC-CCCC--C--ccchhhEEECcCCc-ccccC-------------CCCCCCCEEE
Confidence 87755 3346888999888753 2221 1 24789999998875 33221 1357899999
Q ss_pred eecCcCcccccccccCCCCceEEeeeccccccccccccCCCCCCccCCCCCCCCccceeeccCcccccccccCCCCCCCc
Q 005367 568 VRFCRKLKHLTFLVFAPNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPFAKLQRLRLEGLGRLKSIYWKPLPLPRL 647 (700)
Q Consensus 568 l~~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L 647 (700)
+++| .++.+| ..+++|+.|+++++ .++.+ | . .+++|+.|++++| .++.+|.....+++|
T Consensus 228 Ls~N-~L~~lp--~~l~~L~~L~Ls~N-~L~~l---------p-----~--~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L 286 (622)
T 3g06_A 228 VSGN-RLTSLP--VLPSELKELMVSGN-RLTSL---------P-----M--LPSGLLSLSVYRN-QLTRLPESLIHLSSE 286 (622)
T ss_dssp CCSS-CCSCCC--CCCTTCCEEECCSS-CCSCC---------C-----C--CCTTCCEEECCSS-CCCSCCGGGGGSCTT
T ss_pred ccCC-ccCcCC--CCCCcCcEEECCCC-CCCcC---------C-----c--ccccCcEEeCCCC-CCCcCCHHHhhcccc
Confidence 9987 666666 66789999999986 44432 2 1 5688999999986 777888777778999
Q ss_pred cEEEEcCCC
Q 005367 648 KELEVRGCD 656 (700)
Q Consensus 648 ~~L~i~~C~ 656 (700)
+.|++++|+
T Consensus 287 ~~L~L~~N~ 295 (622)
T 3g06_A 287 TTVNLEGNP 295 (622)
T ss_dssp CEEECCSCC
T ss_pred CEEEecCCC
Confidence 999999885
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.73 E-value=6.5e-18 Score=173.17 Aligned_cols=271 Identities=17% Similarity=0.098 Sum_probs=190.6
Q ss_pred ceeEEEecCCCCcccccccccCCCcceEEEccCCcccccC-CcccccccccceeccccCcccccchhhhcCCCCCEEecc
Q 005367 351 HLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQL-PMGISKLVSLQLLDISYTRVRELPEELKALVNLRCLNLD 429 (700)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~ 429 (700)
.++..+++.+.+...+...+..+++|++|+|++| .++.+ |..++.+++|++|++++|.+...+. +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence 4566677777777777777778889999999999 55555 4678999999999999999986665 8899999999999
Q ss_pred cccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcceEEEEEecchhhHhhhhcccccccchhhhc
Q 005367 430 WAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFL 509 (700)
Q Consensus 430 ~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 509 (700)
+|. +..++ ..++|+.|++++|.+.... ...+++|++|++++|.+....... ....++|+.|++
T Consensus 89 ~n~-l~~l~-----~~~~L~~L~l~~n~l~~~~---------~~~~~~L~~L~l~~N~l~~~~~~~--~~~l~~L~~L~L 151 (317)
T 3o53_A 89 NNY-VQELL-----VGPSIETLHAANNNISRVS---------CSRGQGKKNIYLANNKITMLRDLD--EGCRSRVQYLDL 151 (317)
T ss_dssp SSE-EEEEE-----ECTTCCEEECCSSCCSEEE---------ECCCSSCEEEECCSSCCCSGGGBC--TGGGSSEEEEEC
T ss_pred CCc-ccccc-----CCCCcCEEECCCCccCCcC---------ccccCCCCEEECCCCCCCCccchh--hhccCCCCEEEC
Confidence 985 44444 3489999999999875431 124688999999999887754321 122457888888
Q ss_pred cccCCCceeeecCc-CccccccEEEEeccccccceeecccccccccCCccccCCccEEeeecCcCcccccccccCCCCce
Q 005367 510 HEFDREESIDVAGL-ADLEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLTFLVFAPNLKS 588 (700)
Q Consensus 510 ~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~ 588 (700)
+++. +.......+ ..+++|+.|++++|. +..++ .. ..+++|++|++++|..-...+.+..+++|+.
T Consensus 152 s~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~-~~----------~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~ 218 (317)
T 3o53_A 152 KLNE-IDTVNFAELAASSDTLEHLNLQYNF-IYDVK-GQ----------VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTW 218 (317)
T ss_dssp TTSC-CCEEEGGGGGGGTTTCCEEECTTSC-CCEEE-CC----------CCCTTCCEEECCSSCCCEECGGGGGGTTCSE
T ss_pred CCCC-CCcccHHHHhhccCcCCEEECCCCc-Ccccc-cc----------cccccCCEEECCCCcCCcchhhhcccCcccE
Confidence 8875 333333344 357888888888876 33221 11 1378888888888743333345778888888
Q ss_pred EEeeeccccccccccccCCCCCCccCCCCCCCCccceeeccCcccc-cccccCCCCCCCccEEEEcCCCCCCCCCCCCCC
Q 005367 589 ISVCLCDDMEEIISAGEFDDIPEMTGIISSPFAKLQRLRLEGLGRL-KSIYWKPLPLPRLKELEVRGCDSLEKLPLDSNG 667 (700)
Q Consensus 589 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l-~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~ 667 (700)
|+++++ .++.+. ..+..+++|+.|++++++-. ..++.....+++|+.|++++|+.++..+.....
T Consensus 219 L~L~~N-~l~~l~-------------~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~ 284 (317)
T 3o53_A 219 ISLRNN-KLVLIE-------------KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284 (317)
T ss_dssp EECTTS-CCCEEC-------------TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCCS
T ss_pred EECcCC-cccchh-------------hHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhccC
Confidence 888885 444432 24567788888888876433 233434455788888888877777765544433
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=1.7e-18 Score=188.02 Aligned_cols=210 Identities=17% Similarity=0.142 Sum_probs=107.7
Q ss_pred cceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccccccccceeccc
Q 005367 329 MGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQLLDIS 406 (700)
Q Consensus 329 ~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~ 406 (700)
+|+.|++++|.+..++ .+..+++|++|++++|.+++.++ +..+++|++|+|++| .++.+|. .++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEE----CTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCC----CCCcCEEECc
Confidence 5566666666555554 35555666666666665554443 555566666666665 3333331 2555666666
Q ss_pred cCcccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHh-cCCCcceEEEEE
Q 005367 407 YTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELL-GLKYLEVLEITF 485 (700)
Q Consensus 407 ~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~ 485 (700)
+|.+..++.. .+++|+.|++++|...+..|.. ++++++|+.|++++|.+... .+..+. .+++|+.|++++
T Consensus 108 ~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~------~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 108 NNNISRVSCS--RGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTV------NFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp SSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBC-GGGGSSEEEEECTTSCCCEE------EGGGGGGGTTTCCEEECTT
T ss_pred CCcCCCCCcc--ccCCCCEEECCCCCCCCCCchh-hcCCCCCCEEECCCCCCCCc------ChHHHhhhCCcccEEecCC
Confidence 6655544332 3455666666555432222222 45555566666655554321 122222 445555555554
Q ss_pred ecchhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEeccccccceeecccccccccCCccccCCccE
Q 005367 486 RRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEE 565 (700)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~ 565 (700)
|.+... .....+++|+.|++++|. +..+++. + ..+++|+.
T Consensus 179 N~l~~~-----------------------------~~~~~l~~L~~L~Ls~N~-l~~~~~~-~---------~~l~~L~~ 218 (487)
T 3oja_A 179 NFIYDV-----------------------------KGQVVFAKLKTLDLSSNK-LAFMGPE-F---------QSAAGVTW 218 (487)
T ss_dssp SCCCEE-----------------------------ECCCCCTTCCEEECCSSC-CCEECGG-G---------GGGTTCSE
T ss_pred Cccccc-----------------------------cccccCCCCCEEECCCCC-CCCCCHh-H---------cCCCCccE
Confidence 443221 112235667777776665 3333332 1 24667777
Q ss_pred EeeecCcCccccc-ccccCCCCceEEeeecc
Q 005367 566 VTVRFCRKLKHLT-FLVFAPNLKSISVCLCD 595 (700)
Q Consensus 566 L~l~~~~~l~~l~-~l~~l~~L~~L~l~~~~ 595 (700)
|++++|. +..+| .++.+++|+.|++++++
T Consensus 219 L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 219 ISLRNNK-LVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp EECTTSC-CCEECTTCCCCTTCCEEECTTCC
T ss_pred EEecCCc-CcccchhhccCCCCCEEEcCCCC
Confidence 7777763 33333 45666777777776654
No 68
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.72 E-value=5.2e-19 Score=191.82 Aligned_cols=334 Identities=16% Similarity=0.126 Sum_probs=219.6
Q ss_pred ceEEEcCCCCC-----CCCccccccccceeeeeccccccCCC------CCCCCC-ceeEEEecCCCCcc----ccccccc
Q 005367 308 GFLVYAGSGLT-----EAPADVRGWEMGRRLSLMKNSIKNLP------TIPTCP-HLLTLFLNRNPLTT----IAGGFFQ 371 (700)
Q Consensus 308 ~~~~~~~~~~~-----~~~~~~~~~~~l~~l~l~~~~~~~l~------~~~~~~-~L~~L~l~~~~~~~----~~~~~~~ 371 (700)
..+.+.++.+. .++..+..+++|+.|++++|.+.... .+.... +|++|++++|.++. ..+..+.
T Consensus 31 ~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 110 (461)
T 1z7x_W 31 QVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR 110 (461)
T ss_dssp SEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTT
T ss_pred cEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHc
Confidence 45666666655 34556777789999999999876521 222222 79999999999875 3366688
Q ss_pred CCCcceEEEccCCcccccCCccc-----ccccccceeccccCcccc-----cchhhhcCCCCCEEecccccCccccchhh
Q 005367 372 SMPCLTVLKMSGNETLRQLPMGI-----SKLVSLQLLDISYTRVRE-----LPEELKALVNLRCLNLDWAGELVKVPQQL 441 (700)
Q Consensus 372 ~~~~L~~L~L~~~~~~~~lp~~~-----~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~~~p~~~ 441 (700)
.+++|++|++++|......+..+ ...++|++|++++|+++. ++..+..+++|++|++++|......+...
T Consensus 111 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 190 (461)
T 1z7x_W 111 TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVL 190 (461)
T ss_dssp SCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHH
T ss_pred cCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHH
Confidence 99999999999995322222222 225679999999998873 45667788999999999986433222221
Q ss_pred ----hcCCCccceeeccccCcccccCcccchHHHHhcCCCcceEEEEEecchhhH--hhhhc-ccccccchhhhccccCC
Q 005367 442 ----LSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEITFRRFEAYQ--TFLSS-QKLRSCTQALFLHEFDR 514 (700)
Q Consensus 442 ----~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~-~~~~~~L~~L~l~~~~~ 514 (700)
....++|++|++++|.+... .....+..+..+++|++|++++|.+.... .+... ....++|+.|++++|.
T Consensus 191 ~~~l~~~~~~L~~L~L~~n~l~~~--~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~- 267 (461)
T 1z7x_W 191 CQGLKDSPCQLEALKLESCGVTSD--NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG- 267 (461)
T ss_dssp HHHHHHSCCCCCEEECTTSCCBTT--HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-
T ss_pred HHHHhcCCCCceEEEccCCCCcHH--HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-
Confidence 12467999999999877432 11234667788999999999999876542 22111 1124689999999984
Q ss_pred Cceeee----cCcCccccccEEEEeccccccceeecccccccccCCccccCCccEEeeecCcCcccc------cccccCC
Q 005367 515 EESIDV----AGLADLEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHL------TFLVFAP 584 (700)
Q Consensus 515 ~~~~~~----~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l------~~l~~l~ 584 (700)
++.... ..+..+++|++|++++|. +.+.....+.. ... ...++|++|++++|. +... ..+..++
T Consensus 268 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~--~l~--~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~ 341 (461)
T 1z7x_W 268 ITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCE--TLL--EPGCQLESLWVKSCS-FTAACCSHFSSVLAQNR 341 (461)
T ss_dssp CCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHH--HHT--STTCCCCEEECTTSC-CBGGGHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHHHH--Hhc--cCCccceeeEcCCCC-CchHHHHHHHHHHhhCC
Confidence 444321 234557899999999886 33222222210 000 123699999999985 3332 2466789
Q ss_pred CCceEEeeeccccccccccccCCCCCCccCCCCCCCCccceeeccCccccc-----ccccCCCCCCCccEEEEcCCCCCC
Q 005367 585 NLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPFAKLQRLRLEGLGRLK-----SIYWKPLPLPRLKELEVRGCDSLE 659 (700)
Q Consensus 585 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-----~l~~~~~~~~~L~~L~i~~C~~L~ 659 (700)
+|+.|+++++ .+++.....-.. ......++|++|++++| .++ .++.....+++|++|++++| +++
T Consensus 342 ~L~~L~Ls~n-~i~~~~~~~l~~-------~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~ 411 (461)
T 1z7x_W 342 FLLELQISNN-RLEDAGVRELCQ-------GLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN-CLG 411 (461)
T ss_dssp SCCEEECCSS-BCHHHHHHHHHH-------HHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS-SCC
T ss_pred CccEEEccCC-ccccccHHHHHH-------HHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCC-CCC
Confidence 9999999997 455432200000 01113679999999997 455 45544445899999999998 454
Q ss_pred C
Q 005367 660 K 660 (700)
Q Consensus 660 ~ 660 (700)
.
T Consensus 412 ~ 412 (461)
T 1z7x_W 412 D 412 (461)
T ss_dssp H
T ss_pred H
Confidence 3
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.71 E-value=1.4e-18 Score=177.63 Aligned_cols=159 Identities=16% Similarity=0.114 Sum_probs=102.4
Q ss_pred ccccceeeeeccccccCCCC-CCCCCceeEEEecCCCCcc-ccccccc-------CCCcceEEEccCCcccccCCccc--
Q 005367 326 GWEMGRRLSLMKNSIKNLPT-IPTCPHLLTLFLNRNPLTT-IAGGFFQ-------SMPCLTVLKMSGNETLRQLPMGI-- 394 (700)
Q Consensus 326 ~~~~l~~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~-~~~~~~~-------~~~~L~~L~L~~~~~~~~lp~~~-- 394 (700)
..++++.+++.+|.+ .+|. +.. .|+.|++++|.+.. ..+..+. ++++|++|++++|...+.+|..+
T Consensus 41 ~~~~L~~l~l~~n~l-~~p~~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-ADLGQFTD--IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEEECTTHHHHCCTT-CCCHHHHH--HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred cCCCceeEeeccccc-ccHHHHHH--HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 345677777777777 5552 222 27777777777633 2222232 57778888888885444666665
Q ss_pred ccccccceeccccCcccccchhhhcC-----CCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchH
Q 005367 395 SKLVSLQLLDISYTRVRELPEELKAL-----VNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVA 469 (700)
Q Consensus 395 ~~l~~L~~L~l~~~~l~~lp~~~~~l-----~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 469 (700)
+.+++|++|++++|++...|..++.+ ++|++|++++|.. ..++...++++++|++|++++|.+... ...+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~ 192 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS-LNFSCEQVRVFPALSTLDLSDNPELGE----RGLI 192 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSC-CCCCTTTCCCCSSCCEEECCSCTTCHH----HHHH
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCC-ccchHHHhccCCCCCEEECCCCCcCcc----hHHH
Confidence 77788888888888877667666666 7888888887754 445533477788888888887765221 1123
Q ss_pred HHH--hcCCCcceEEEEEecchhhH
Q 005367 470 EEL--LGLKYLEVLEITFRRFEAYQ 492 (700)
Q Consensus 470 ~~l--~~l~~L~~L~l~~~~~~~~~ 492 (700)
..+ ..+++|++|++++|.+...+
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~ 217 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPS 217 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHH
T ss_pred HHHHhccCCCCCEEECCCCcCcchH
Confidence 344 67778888888777766443
No 70
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.71 E-value=4.7e-18 Score=190.53 Aligned_cols=310 Identities=15% Similarity=0.136 Sum_probs=176.6
Q ss_pred ccccceeeeeccccccCCC------CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCccc---ccCCccccc
Q 005367 326 GWEMGRRLSLMKNSIKNLP------TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETL---RQLPMGISK 396 (700)
Q Consensus 326 ~~~~l~~l~l~~~~~~~l~------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~---~~lp~~~~~ 396 (700)
.+++|+.|++++|.+..+. .+..+++|++|++++|.+...+ ..+..+++|+.|+++..... ...+..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 3455555555555554221 1234556666666665554433 33555566666665533111 123344556
Q ss_pred ccccceeccccCcccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHhcCC
Q 005367 397 LVSLQLLDISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLK 476 (700)
Q Consensus 397 l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~ 476 (700)
+++|+.|+++++....+|..+..+++|++|++++|..........+.++++|++|++.+ .+. ....+.....++
T Consensus 269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~-----~~~l~~~~~~~~ 342 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIG-----DRGLEVLAQYCK 342 (592)
T ss_dssp CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGH-----HHHHHHHHHHCT
T ss_pred cccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccC-----HHHHHHHHHhCC
Confidence 66677776666555567777777888888888887632222223357788888888872 221 122333446778
Q ss_pred CcceEEEEE----------ecchhhHhhhhcccccccchhhhccccCCCceeeecCcCc-cccccEEEEec---cccccc
Q 005367 477 YLEVLEITF----------RRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLAD-LEQLNTLIFYS---CDWIKG 542 (700)
Q Consensus 477 ~L~~L~l~~----------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-l~~L~~L~l~~---~~~l~~ 542 (700)
+|++|+++. +.......+......+++|+.|.+ .+..++...+..+.. +++|+.|++++ |..+++
T Consensus 343 ~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~ 421 (592)
T 3ogk_B 343 QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITD 421 (592)
T ss_dssp TCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSS
T ss_pred CCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccC
Confidence 888888883 222222222222223457788877 444455544444544 77888888874 334443
Q ss_pred eeecccccccccCCccccCCccEEeeecCcC-ccc--cccc-ccCCCCceEEeeeccccccccccccCCCCCCccCCCCC
Q 005367 543 LKIDYKDMVQKSRQPYVFRSLEEVTVRFCRK-LKH--LTFL-VFAPNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISS 618 (700)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~--l~~l-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 618 (700)
.+.+... ..-...+++|++|++++|.+ +.. +..+ ..+++|+.|++++|. +++... + ....
T Consensus 422 ~p~~~~~----~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~-------~----~~~~ 485 (592)
T 3ogk_B 422 LPLDNGV----RSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGL-------M----EFSR 485 (592)
T ss_dssp CCCHHHH----HHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHH-------H----HHHT
T ss_pred chHHHHH----HHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHH-------H----HHHh
Confidence 2211000 00013478899999987653 222 2233 348889999998875 433211 1 2345
Q ss_pred CCCccceeeccCcccccc--cccCCCCCCCccEEEEcCCCCCCCC
Q 005367 619 PFAKLQRLRLEGLGRLKS--IYWKPLPLPRLKELEVRGCDSLEKL 661 (700)
Q Consensus 619 ~~~~L~~L~l~~c~~l~~--l~~~~~~~~~L~~L~i~~C~~L~~l 661 (700)
++++|++|+|++|. ++. ++.....+++|++|++++|. ++.-
T Consensus 486 ~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~ 528 (592)
T 3ogk_B 486 GCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMT 528 (592)
T ss_dssp CCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTT
T ss_pred cCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHH
Confidence 78999999999987 443 22223357999999999997 7654
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=1.4e-16 Score=173.02 Aligned_cols=238 Identities=17% Similarity=0.106 Sum_probs=176.1
Q ss_pred CCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccccccccceeccccCcccccchhhhcCCCCCEE
Q 005367 347 PTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQLLDISYTRVRELPEELKALVNLRCL 426 (700)
Q Consensus 347 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L 426 (700)
..+++|+.|++++|.++..++..|..+++|++|+|++| .++..++ ++.+++|++|++++|.+..+|. .++|+.|
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L 104 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETL 104 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEE
Confidence 45679999999999999998888999999999999999 4554443 8899999999999999987764 3899999
Q ss_pred ecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcceEEEEEecchhhHhhhhcccccccchh
Q 005367 427 NLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQA 506 (700)
Q Consensus 427 ~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 506 (700)
++++|.. ..++.. .+++|+.|++++|.+... .+..++.+++|+.|++++|.+.+..
T Consensus 105 ~L~~N~l-~~~~~~---~l~~L~~L~L~~N~l~~~------~~~~~~~l~~L~~L~Ls~N~l~~~~-------------- 160 (487)
T 3oja_A 105 HAANNNI-SRVSCS---RGQGKKNIYLANNKITML------RDLDEGCRSRVQYLDLKLNEIDTVN-------------- 160 (487)
T ss_dssp ECCSSCC-CCEEEC---CCSSCEEEECCSSCCCSG------GGBCGGGGSSEEEEECTTSCCCEEE--------------
T ss_pred ECcCCcC-CCCCcc---ccCCCCEEECCCCCCCCC------CchhhcCCCCCCEEECCCCCCCCcC--------------
Confidence 9999854 445442 568899999999887442 2334567888888888777654321
Q ss_pred hhccccCCCceeeecCcC-ccccccEEEEeccccccceeecccccccccCCccccCCccEEeeecCcCcccccccccCCC
Q 005367 507 LFLHEFDREESIDVAGLA-DLEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLTFLVFAPN 585 (700)
Q Consensus 507 L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~ 585 (700)
...+. .+++|+.|++++|. +..++. . ..+++|+.|++++|..-..++.+..+++
T Consensus 161 -------------~~~l~~~l~~L~~L~Ls~N~-l~~~~~--~---------~~l~~L~~L~Ls~N~l~~~~~~~~~l~~ 215 (487)
T 3oja_A 161 -------------FAELAASSDTLEHLNLQYNF-IYDVKG--Q---------VVFAKLKTLDLSSNKLAFMGPEFQSAAG 215 (487)
T ss_dssp -------------GGGGGGGTTTCCEEECTTSC-CCEEEC--C---------CCCTTCCEEECCSSCCCEECGGGGGGTT
T ss_pred -------------hHHHhhhCCcccEEecCCCc-cccccc--c---------ccCCCCCEEECCCCCCCCCCHhHcCCCC
Confidence 12233 57899999999887 333211 1 2488999999999854343456888999
Q ss_pred CceEEeeeccccccccccccCCCCCCccCCCCCCCCccceeeccCcccc-cccccCCCCCCCccEEEEc
Q 005367 586 LKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPFAKLQRLRLEGLGRL-KSIYWKPLPLPRLKELEVR 653 (700)
Q Consensus 586 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l-~~l~~~~~~~~~L~~L~i~ 653 (700)
|+.|+++++ .++.++ ..+..+++|+.|++++++-. ..++.....+++|+.++++
T Consensus 216 L~~L~Ls~N-~l~~lp-------------~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 216 VTWISLRNN-KLVLIE-------------KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CSEEECTTS-CCCEEC-------------TTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred ccEEEecCC-cCcccc-------------hhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 999999985 344432 25677899999999986544 2444444567888888876
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=5.5e-17 Score=165.30 Aligned_cols=148 Identities=23% Similarity=0.360 Sum_probs=100.1
Q ss_pred ccccccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCccccccccccee
Q 005367 324 VRGWEMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQLL 403 (700)
Q Consensus 324 ~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L 403 (700)
...+++++.|++.++.++.++.+..+++|++|++++|.++..++ +..+++|++|++++| .++.++ .+..+++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEE
T ss_pred HHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEE
Confidence 44567788888888888777777778888888888887777665 677788888888887 455554 57777777777
Q ss_pred ccccCcccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcceEEE
Q 005367 404 DISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEI 483 (700)
Q Consensus 404 ~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 483 (700)
++++|++..++. +..+++|++|++++|. +..++. ++++++|+.|++++|.+... +. +..+++|+.|++
T Consensus 113 ~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~~-------~~-l~~l~~L~~L~l 180 (308)
T 1h6u_A 113 DLTSTQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP--LAGLTNLQYLSIGNAQVSDL-------TP-LANLSKLTTLKA 180 (308)
T ss_dssp ECTTSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECCSSCCCCC-------GG-GTTCTTCCEEEC
T ss_pred ECCCCCCCCchh-hcCCCCCCEEECCCCc-cCcCcc--ccCCCCccEEEccCCcCCCC-------hh-hcCCCCCCEEEC
Confidence 777777776654 6777777777777764 344444 56677777777776655321 11 444555555555
Q ss_pred EEec
Q 005367 484 TFRR 487 (700)
Q Consensus 484 ~~~~ 487 (700)
++|.
T Consensus 181 ~~n~ 184 (308)
T 1h6u_A 181 DDNK 184 (308)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 4443
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=9.2e-17 Score=161.18 Aligned_cols=219 Identities=22% Similarity=0.260 Sum_probs=155.7
Q ss_pred EEEcCCCCCCCCccccccccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCccc
Q 005367 310 LVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETL 387 (700)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 387 (700)
+...+.++..+|..+. +.++.|++++|.++.++ .+..+++|++|++++|.++.+++..+..+++|++|++++|...
T Consensus 12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 4445667777887665 57999999999998877 5788999999999999988888877889999999999999433
Q ss_pred ccCCcccccccccceeccccCcccccch-hhhcCCCCCEEecccccCcc-ccchhhhcCCCccceeeccccCcccccCcc
Q 005367 388 RQLPMGISKLVSLQLLDISYTRVRELPE-ELKALVNLRCLNLDWAGELV-KVPQQLLSNFSRLRVLRMFATGLISFYSWH 465 (700)
Q Consensus 388 ~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~-~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~ 465 (700)
...+..+..+++|++|++++|++..++. .++.+++|++|++++|.... .+|.. ++++++|++|++++|.+....
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~--- 165 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY--- 165 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEEC---
T ss_pred ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCCCCcCC---
Confidence 3344678889999999999998887665 58889999999999885433 24555 788899999999988774421
Q ss_pred cchHHHHhcCCCcc-eEEEEEecchhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEecccccccee
Q 005367 466 ENVAEELLGLKYLE-VLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGLK 544 (700)
Q Consensus 466 ~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~ 544 (700)
......+..++.|. .|++++|.+..+.. ..+ ...+|+.|++++|. +..++
T Consensus 166 ~~~~~~l~~L~~l~l~L~ls~n~l~~~~~---------------------------~~~-~~~~L~~L~L~~n~-l~~~~ 216 (276)
T 2z62_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQP---------------------------GAF-KEIRLKELALDTNQ-LKSVP 216 (276)
T ss_dssp GGGGHHHHTCTTCCEEEECCSSCCCEECT---------------------------TSS-CSCCEEEEECCSSC-CSCCC
T ss_pred HHHhhhhhhccccceeeecCCCcccccCc---------------------------ccc-CCCcccEEECCCCc-eeecC
Confidence 11223333444443 56666655433221 112 22378888888776 44443
Q ss_pred ecccccccccCCccccCCccEEeeecCc
Q 005367 545 IDYKDMVQKSRQPYVFRSLEEVTVRFCR 572 (700)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 572 (700)
...+. .+++|++|++++++
T Consensus 217 ~~~~~---------~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 217 DGIFD---------RLTSLQKIWLHTNP 235 (276)
T ss_dssp TTTTT---------TCCSCCEEECCSSC
T ss_pred HhHhc---------ccccccEEEccCCc
Confidence 33322 57888999998764
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=3.4e-16 Score=156.35 Aligned_cols=194 Identities=24% Similarity=0.420 Sum_probs=140.9
Q ss_pred ceEEEcCCCCCCCCccccccccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCc
Q 005367 308 GFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNE 385 (700)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 385 (700)
..+...+.++..+|..+. +.++.|++++|.++.++ .+..+++|++|++++|.++.+++..|..+++|++|++++|
T Consensus 19 ~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n- 95 (270)
T 2o6q_A 19 NSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN- 95 (270)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS-
T ss_pred CEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC-
Confidence 345666777777877665 57888888888888877 4778888888888888888888777788888888888888
Q ss_pred ccccCCc-ccccccccceeccccCcccccchh-hhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccC
Q 005367 386 TLRQLPM-GISKLVSLQLLDISYTRVRELPEE-LKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYS 463 (700)
Q Consensus 386 ~~~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 463 (700)
.++.+|. .+..+++|++|++++|++..++.. +..+++|++|++++|. +..+|...++.+++|+.|++++|.+...
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~-- 172 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRV-- 172 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCC--
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcEe--
Confidence 4555543 467788888888888888866543 6788888888888874 4566665577888888888888776432
Q ss_pred cccchHHHHhcCCCcceEEEEEecchhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEeccc
Q 005367 464 WHENVAEELLGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCD 538 (700)
Q Consensus 464 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 538 (700)
.+..+..+++|+.|++++|.+..++ ...+..+++|+.|++++++
T Consensus 173 ----~~~~~~~l~~L~~L~L~~N~l~~~~---------------------------~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 173 ----PEGAFDKLTELKTLKLDNNQLKRVP---------------------------EGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp ----CTTTTTTCTTCCEEECCSSCCSCCC---------------------------TTTTTTCTTCCEEECCSSC
T ss_pred ----ChhHhccCCCcCEEECCCCcCCcCC---------------------------HHHhccccCCCEEEecCCC
Confidence 1123566777888877776544322 1235567788888887765
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.67 E-value=1.4e-16 Score=162.27 Aligned_cols=166 Identities=20% Similarity=0.314 Sum_probs=114.7
Q ss_pred cceEEEcCCCCCCCCccccccccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcc
Q 005367 307 EGFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNET 386 (700)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 386 (700)
-..+.+.+..+..+| .+..+++|+.|++++|.+..++.+..+++|+.|++++|.++..+ .+..+++|++|++++| .
T Consensus 43 L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n-~ 118 (308)
T 1h6u_A 43 ITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTST-Q 118 (308)
T ss_dssp CCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECTTS-C
T ss_pred cCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch--hhcCCCCCCEEECCCC-C
Confidence 345666677777764 56777778888888777777777777777888888877776653 2667777888888777 4
Q ss_pred cccCCcccccccccceeccccCcccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCccc
Q 005367 387 LRQLPMGISKLVSLQLLDISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHE 466 (700)
Q Consensus 387 ~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 466 (700)
++.++ .+..+++|++|++++|.+..++. +..+++|+.|++++|. +..++. +.++++|+.|++++|.+...
T Consensus 119 l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~~----- 188 (308)
T 1h6u_A 119 ITDVT-PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLKADDNKISDI----- 188 (308)
T ss_dssp CCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCC-----
T ss_pred CCCch-hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh--hcCCCCCCEEECCCCccCcC-----
Confidence 55555 37777778888888777776654 6777778888887774 344554 66777788888777766332
Q ss_pred chHHHHhcCCCcceEEEEEecch
Q 005367 467 NVAEELLGLKYLEVLEITFRRFE 489 (700)
Q Consensus 467 ~~~~~l~~l~~L~~L~l~~~~~~ 489 (700)
+ .+..+++|+.|++++|.+.
T Consensus 189 --~-~l~~l~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 189 --S-PLASLPNLIEVHLKNNQIS 208 (308)
T ss_dssp --G-GGGGCTTCCEEECTTSCCC
T ss_pred --h-hhcCCCCCCEEEccCCccC
Confidence 1 1566666777766665543
No 76
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.67 E-value=1.9e-17 Score=185.50 Aligned_cols=319 Identities=14% Similarity=0.108 Sum_probs=204.9
Q ss_pred ccccceeeeeccccccCCC------CCCCCCceeEEEecCCCCcc----cccccccCCCcceEEEccCCcccccCCcccc
Q 005367 326 GWEMGRRLSLMKNSIKNLP------TIPTCPHLLTLFLNRNPLTT----IAGGFFQSMPCLTVLKMSGNETLRQLPMGIS 395 (700)
Q Consensus 326 ~~~~l~~l~l~~~~~~~l~------~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~ 395 (700)
.+++|+.|++.+|.+.... .+..+++|+.|++++|.++. ..+..+..+++|+.|++++| .+..+|..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHHh
Confidence 5577788888877654332 12356778888888777652 23334557778888888887 4555666677
Q ss_pred cccccceeccccCcc----cccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHH
Q 005367 396 KLVSLQLLDISYTRV----RELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEE 471 (700)
Q Consensus 396 ~l~~L~~L~l~~~~l----~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 471 (700)
.+++|++|++++... ...+..+..+++|+.|+++++ ....+|.. +..+++|++|++++|.+.. ......
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~-~~~~~~L~~L~Ls~~~l~~-----~~~~~~ 313 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPIL-FPFAAQIRKLDLLYALLET-----EDHCTL 313 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGG-GGGGGGCCEEEETTCCCCH-----HHHHHH
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHH-HhhcCCCcEEecCCCcCCH-----HHHHHH
Confidence 778888888875321 133445667778888877764 23445553 6788999999999887422 223345
Q ss_pred HhcCCCcceEEEEEecchhhHhhhhcccccccchhhhccc----------cCCCceeeecCc-CccccccEEEEeccccc
Q 005367 472 LLGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHE----------FDREESIDVAGL-ADLEQLNTLIFYSCDWI 540 (700)
Q Consensus 472 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~----------~~~~~~~~~~~l-~~l~~L~~L~l~~~~~l 540 (700)
+..+++|++|++. +.+.. ..+......+++|++|++.. |..++...+..+ ..+++|++|++ +|..+
T Consensus 314 ~~~~~~L~~L~L~-~~~~~-~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l 390 (592)
T 3ogk_B 314 IQKCPNLEVLETR-NVIGD-RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDI 390 (592)
T ss_dssp HTTCTTCCEEEEE-GGGHH-HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCC
T ss_pred HHhCcCCCEEecc-CccCH-HHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCc
Confidence 7899999999999 44332 22222223356899999995 666655444332 34789999999 44445
Q ss_pred cceeecccccccccCCccccCCccEEeeec---CcCccccc-------ccccCCCCceEEeeeccc-cccccccccCCCC
Q 005367 541 KGLKIDYKDMVQKSRQPYVFRSLEEVTVRF---CRKLKHLT-------FLVFAPNLKSISVCLCDD-MEEIISAGEFDDI 609 (700)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~---~~~l~~l~-------~l~~l~~L~~L~l~~~~~-l~~~~~~~~~~~~ 609 (700)
.+..+..+. ..+++|++|++.+ |+.++..| .+..+++|+.|+++.|.. +++...
T Consensus 391 ~~~~~~~l~--------~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~------- 455 (592)
T 3ogk_B 391 TNESLESIG--------TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL------- 455 (592)
T ss_dssp CHHHHHHHH--------HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH-------
T ss_pred cHHHHHHHH--------hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH-------
Confidence 543333333 2488999999984 55666532 256799999999988764 332211
Q ss_pred CCccCCCCCCCCccceeeccCcccccc--cccCCCCCCCccEEEEcCCCCCCC--CC----CCCCCcceEeecch
Q 005367 610 PEMTGIISSPFAKLQRLRLEGLGRLKS--IYWKPLPLPRLKELEVRGCDSLEK--LP----LDSNGRRILIRGHE 676 (700)
Q Consensus 610 ~~~~~~~~~~~~~L~~L~l~~c~~l~~--l~~~~~~~~~L~~L~i~~C~~L~~--lp----~~~~~~~~~i~~~~ 676 (700)
. .....+++|+.|++++|. ++. ++.....+++|++|++++|+ +++ ++ ...+.+.+.+++|.
T Consensus 456 ~----~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 456 S----YIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp H----HHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred H----HHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 0 122357899999999874 543 22223468999999999998 553 22 11233377777764
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.67 E-value=4.3e-16 Score=152.63 Aligned_cols=103 Identities=24% Similarity=0.296 Sum_probs=46.2
Q ss_pred ceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCc-ccccccccceecccc-Ccccccch-hhhcCCCCCEEe
Q 005367 351 HLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPM-GISKLVSLQLLDISY-TRVRELPE-ELKALVNLRCLN 427 (700)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~-~~l~~lp~-~~~~l~~L~~L~ 427 (700)
+|+.|++++|.++.+++..+..+++|++|++++|..++.++. .+..+++|++|++++ |+++.++. .+..+++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 444555555544444444444455555555555432333332 344445555555554 44444432 234445555555
Q ss_pred cccccCccccchhhhcCCCccc---eeecccc
Q 005367 428 LDWAGELVKVPQQLLSNFSRLR---VLRMFAT 456 (700)
Q Consensus 428 l~~~~~~~~~p~~~~~~l~~L~---~L~l~~~ 456 (700)
+++|. +..+|. ++.+++|+ .|++++|
T Consensus 112 l~~n~-l~~lp~--~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 112 IFNTG-LKMFPD--LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp EEEEC-CCSCCC--CTTCCBCCSEEEEEEESC
T ss_pred CCCCC-Cccccc--cccccccccccEEECCCC
Confidence 55443 223333 33444444 4444444
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.67 E-value=4.6e-17 Score=168.53 Aligned_cols=230 Identities=15% Similarity=0.153 Sum_probs=113.3
Q ss_pred CcceEEEccCCcccccCCcccccccccceeccccCccc-c-cchhhhcCCCCCEEecccccCccccchhhhcCCCcccee
Q 005367 374 PCLTVLKMSGNETLRQLPMGISKLVSLQLLDISYTRVR-E-LPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVL 451 (700)
Q Consensus 374 ~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~-~-lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L 451 (700)
++++.|++++| .+...+..+..+++|++|++++|.+. . ++..+..+++|++|++++|......+.. ++++++|++|
T Consensus 70 ~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEE
T ss_pred ccceEEEcCCc-cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH-HhcCCCCCEE
Confidence 45555555555 23333333445566666666666554 2 5555556666666666665433233333 5556666666
Q ss_pred ecccc-CcccccCcccchHHHHhcCCCcceEEEEEe-cchhhHhhhhcccccccchhhhccccCCCceeeecCcCccc-c
Q 005367 452 RMFAT-GLISFYSWHENVAEELLGLKYLEVLEITFR-RFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLE-Q 528 (700)
Q Consensus 452 ~l~~~-~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~-~ 528 (700)
++++| .+.. ...+..+..+++|++|++++| .+..... . ..+..++ +
T Consensus 148 ~L~~~~~l~~-----~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-~-------------------------~~~~~l~~~ 196 (336)
T 2ast_B 148 NLSGCSGFSE-----FALQTLLSSCSRLDELNLSWCFDFTEKHV-Q-------------------------VAVAHVSET 196 (336)
T ss_dssp ECTTCBSCCH-----HHHHHHHHHCTTCCEEECCCCTTCCHHHH-H-------------------------HHHHHSCTT
T ss_pred ECCCCCCCCH-----HHHHHHHhcCCCCCEEcCCCCCCcChHHH-H-------------------------HHHHhcccC
Confidence 66655 2211 123344555666666666655 4332110 0 0122334 5
Q ss_pred ccEEEEeccc-ccccee-ecccccccccCCccccCCccEEeeecCcCcc--cccccccCCCCceEEeeeccccccccccc
Q 005367 529 LNTLIFYSCD-WIKGLK-IDYKDMVQKSRQPYVFRSLEEVTVRFCRKLK--HLTFLVFAPNLKSISVCLCDDMEEIISAG 604 (700)
Q Consensus 529 L~~L~l~~~~-~l~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~l~~l~~l~~L~~L~l~~~~~l~~~~~~~ 604 (700)
|++|++++|. .+.+.. +... ..+++|++|++++|..++ .++.++.+++|+.|++++|..+.+...
T Consensus 197 L~~L~l~~~~~~~~~~~l~~~~---------~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-- 265 (336)
T 2ast_B 197 ITQLNLSGYRKNLQKSDLSTLV---------RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL-- 265 (336)
T ss_dssp CCEEECCSCGGGSCHHHHHHHH---------HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG--
T ss_pred CCEEEeCCCcccCCHHHHHHHH---------hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH--
Confidence 6666666553 222101 1111 135667777777665332 244566677777777777653332211
Q ss_pred cCCCCCCccCCCCCCCCccceeeccCcccccccccCCCCC-CCccEEEEcCCCCCCCCC
Q 005367 605 EFDDIPEMTGIISSPFAKLQRLRLEGLGRLKSIYWKPLPL-PRLKELEVRGCDSLEKLP 662 (700)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~-~~L~~L~i~~C~~L~~lp 662 (700)
..+..+++|+.|++++| +..-... .+ .+|+.|++ +|.+++...
T Consensus 266 ----------~~l~~~~~L~~L~l~~~--i~~~~~~--~l~~~l~~L~l-~~n~l~~~~ 309 (336)
T 2ast_B 266 ----------LELGEIPTLKTLQVFGI--VPDGTLQ--LLKEALPHLQI-NCSHFTTIA 309 (336)
T ss_dssp ----------GGGGGCTTCCEEECTTS--SCTTCHH--HHHHHSTTSEE-SCCCSCCTT
T ss_pred ----------HHHhcCCCCCEEeccCc--cCHHHHH--HHHhhCcceEE-ecccCcccc
Confidence 13455777777777776 2221111 11 23555556 455666544
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.66 E-value=2.5e-16 Score=158.82 Aligned_cols=201 Identities=20% Similarity=0.207 Sum_probs=145.6
Q ss_pred ccccccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCccccccccccee
Q 005367 324 VRGWEMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQLL 403 (700)
Q Consensus 324 ~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L 403 (700)
+.++++++.+++.++.++.+|.- -.++++.|++++|.++...+..+..+++|++|+|++| .++.++.. +.+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~-~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPD-LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSC-CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCC-CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEE
Confidence 45567888999999999988832 2378999999999998888888889999999999999 56666543 778999999
Q ss_pred ccccCcccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcceEEE
Q 005367 404 DISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEI 483 (700)
Q Consensus 404 ~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 483 (700)
++++|++..+|..+..+++|+.|++++|. +..++...+.++++|+.|++++|.+... .+..+..+++|+.|++
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~------~~~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTL------PPGLLTPTPKLEKLSL 155 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCC------CTTTTTTCTTCCEEEC
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCcc------ChhhcccccCCCEEEC
Confidence 99999999998888899999999999884 5666655588899999999998877432 1123456777777777
Q ss_pred EEecchhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEeccccccceeecccccccccCCccccCCc
Q 005367 484 TFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSL 563 (700)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L 563 (700)
++|.+..++. ..+..+++|+.|++++|. +..++... ..+++|
T Consensus 156 ~~N~l~~l~~---------------------------~~~~~l~~L~~L~L~~N~-l~~ip~~~----------~~~~~L 197 (290)
T 1p9a_G 156 ANNNLTELPA---------------------------GLLNGLENLDTLLLQENS-LYTIPKGF----------FGSHLL 197 (290)
T ss_dssp TTSCCSCCCT---------------------------TTTTTCTTCCEEECCSSC-CCCCCTTT----------TTTCCC
T ss_pred CCCcCCccCH---------------------------HHhcCcCCCCEEECCCCc-CCccChhh----------cccccC
Confidence 7665442221 234456677777776665 23222221 235567
Q ss_pred cEEeeecCc
Q 005367 564 EEVTVRFCR 572 (700)
Q Consensus 564 ~~L~l~~~~ 572 (700)
+.|++.+++
T Consensus 198 ~~l~L~~Np 206 (290)
T 1p9a_G 198 PFAFLHGNP 206 (290)
T ss_dssp SEEECCSCC
T ss_pred CeEEeCCCC
Confidence 777777654
No 80
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.66 E-value=1.8e-18 Score=187.61 Aligned_cols=314 Identities=17% Similarity=0.140 Sum_probs=157.4
Q ss_pred ccccccceeeeeccccccC-----CC-CCCCCCceeEEEecCCCCccccc-ccccCCC----cceEEEccCCcccc----
Q 005367 324 VRGWEMGRRLSLMKNSIKN-----LP-TIPTCPHLLTLFLNRNPLTTIAG-GFFQSMP----CLTVLKMSGNETLR---- 388 (700)
Q Consensus 324 ~~~~~~l~~l~l~~~~~~~-----l~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~----~L~~L~L~~~~~~~---- 388 (700)
+..+++++.|++++|.+.. ++ .+..+++|++|++++|.+..... .++..++ +|++|++++|....
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence 4455666777777666552 22 34555667777777766554322 2222333 56777777663221
Q ss_pred cCCcccccccccceeccccCcccc-cchhhh-----cCCCCCEEecccccCccc----cchhhhcCCCccceeeccccCc
Q 005367 389 QLPMGISKLVSLQLLDISYTRVRE-LPEELK-----ALVNLRCLNLDWAGELVK----VPQQLLSNFSRLRVLRMFATGL 458 (700)
Q Consensus 389 ~lp~~~~~l~~L~~L~l~~~~l~~-lp~~~~-----~l~~L~~L~l~~~~~~~~----~p~~~~~~l~~L~~L~l~~~~~ 458 (700)
.++..+..+++|++|++++|.+.. .+..+. ..++|++|++++|..... ++.. +..+++|++|++++|.+
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV-LRAKPDFKELTVSNNDI 182 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH-HHHCTTCCEEECCSSBC
T ss_pred HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH-HhhCCCCCEEECcCCCc
Confidence 345556666677777777766652 122111 244577777766643321 1222 45566677777766654
Q ss_pred ccccCcccchHHHHh-cCCCcceEEEEEecchhhH--hhhhcccccccchhhhccccCCCceeeecC-----cCcccccc
Q 005367 459 ISFYSWHENVAEELL-GLKYLEVLEITFRRFEAYQ--TFLSSQKLRSCTQALFLHEFDREESIDVAG-----LADLEQLN 530 (700)
Q Consensus 459 ~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----l~~l~~L~ 530 (700)
... ........+. ..++|++|++++|.+.... .+.......++|++|+++++. +.+..+.. ..++++|+
T Consensus 183 ~~~--~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~ 259 (461)
T 1z7x_W 183 NEA--GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLR 259 (461)
T ss_dssp HHH--HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCC
T ss_pred chH--HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCce
Confidence 221 0001111121 2456777777666654321 222222233466666666663 22221111 12356777
Q ss_pred EEEEeccccccceeecccccccccCCccccCCccEEeeecCcCccccc--ccc-----cCCCCceEEeeecccccccccc
Q 005367 531 TLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLT--FLV-----FAPNLKSISVCLCDDMEEIISA 603 (700)
Q Consensus 531 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~-----~l~~L~~L~l~~~~~l~~~~~~ 603 (700)
+|++++|. +.......+. .....+++|++|++++|. +.... .+. ..++|+.|++++|. +++...
T Consensus 260 ~L~L~~n~-l~~~~~~~l~-----~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~- 330 (461)
T 1z7x_W 260 TLWIWECG-ITAKGCGDLC-----RVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACC- 330 (461)
T ss_dssp EEECTTSC-CCHHHHHHHH-----HHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGH-
T ss_pred EEECcCCC-CCHHHHHHHH-----HHHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcCCCC-CchHHH-
Confidence 77776664 2221110000 001135677777777763 32211 111 23577777777764 222110
Q ss_pred ccCCCCCCccCCCCCCCCccceeeccCcccccccccC-----C-CCCCCccEEEEcCCCCCC
Q 005367 604 GEFDDIPEMTGIISSPFAKLQRLRLEGLGRLKSIYWK-----P-LPLPRLKELEVRGCDSLE 659 (700)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-----~-~~~~~L~~L~i~~C~~L~ 659 (700)
..++ ..+..+++|+.|+++++ .++..... . ...++|++|++++| +++
T Consensus 331 ---~~l~----~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~ 383 (461)
T 1z7x_W 331 ---SHFS----SVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVS 383 (461)
T ss_dssp ---HHHH----HHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCC
T ss_pred ---HHHH----HHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCC
Confidence 0011 23345688899999886 44433211 1 12579999999988 566
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=5.2e-16 Score=155.70 Aligned_cols=215 Identities=19% Similarity=0.168 Sum_probs=157.4
Q ss_pred eeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCC-cccccccccceeccccCccc
Q 005367 333 LSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLP-MGISKLVSLQLLDISYTRVR 411 (700)
Q Consensus 333 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~ 411 (700)
.+-.+..+..+|. .-.++|++|++++|.++..++..+.++++|++|++++| .++.++ ..+..+++|++|++++|++.
T Consensus 12 ~~c~~~~l~~ip~-~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 12 YQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp EECTTSCCSSCCS-SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EEecCCCccccCC-CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccC
Confidence 3344555666764 11268999999999999998877999999999999999 555554 47889999999999999999
Q ss_pred ccc-hhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcceEEEEEecchh
Q 005367 412 ELP-EELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEITFRRFEA 490 (700)
Q Consensus 412 ~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 490 (700)
.++ ..+..+++|++|++++|.. ..++...++++++|++|++++|.+... ..+..+..+++|+.|++++|.+..
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSF-----KLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSCC-CCSTTCCCTTCTTCCEEECCSSCCCCC-----CCCGGGGGCTTCCEEECCSSCCCE
T ss_pred ccChhhhcCCccccEEECCCCCc-cccCchhcccCCCCCEEECcCCcccee-----cCchhhccCCCCCEEECCCCCCCc
Confidence 665 5688999999999998854 455553488999999999999887432 235567888999999998887654
Q ss_pred hHhhhhcccccccchhhhccccCCCceeeecCcCcccccc----EEEEeccccccceeecccccccccCCccccCCccEE
Q 005367 491 YQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLN----TLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEV 566 (700)
Q Consensus 491 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~----~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L 566 (700)
+.. ..+..+++|+ +|+++++. +..++.... ...+|++|
T Consensus 164 ~~~---------------------------~~~~~l~~L~~l~l~L~ls~n~-l~~~~~~~~----------~~~~L~~L 205 (276)
T 2z62_A 164 IYC---------------------------TDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAF----------KEIRLKEL 205 (276)
T ss_dssp ECG---------------------------GGGHHHHTCTTCCEEEECCSSC-CCEECTTSS----------CSCCEEEE
T ss_pred CCH---------------------------HHhhhhhhccccceeeecCCCc-ccccCcccc----------CCCcccEE
Confidence 321 1222333444 77787765 333333222 24589999
Q ss_pred eeecCcCcccccc--cccCCCCceEEeeec
Q 005367 567 TVRFCRKLKHLTF--LVFAPNLKSISVCLC 594 (700)
Q Consensus 567 ~l~~~~~l~~l~~--l~~l~~L~~L~l~~~ 594 (700)
++++|. ++.++. ++.+++|+.|+++++
T Consensus 206 ~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 206 ALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp ECCSSC-CSCCCTTTTTTCCSCCEEECCSS
T ss_pred ECCCCc-eeecCHhHhcccccccEEEccCC
Confidence 999874 555543 577888999988875
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.65 E-value=7.6e-16 Score=153.85 Aligned_cols=198 Identities=21% Similarity=0.284 Sum_probs=139.8
Q ss_pred cceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcc-cccccccceecccc
Q 005367 329 MGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMG-ISKLVSLQLLDISY 407 (700)
Q Consensus 329 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~ 407 (700)
..+.++++++.++.+|.- -.++|+.|++++|.++.+++..|..+++|++|++++| .++.+|.. +..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSN-IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCC-CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCC
Confidence 467888999999988842 2268999999999999888877899999999999999 56666654 57899999999999
Q ss_pred Ccccccchh-hhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcceEEEEEe
Q 005367 408 TRVRELPEE-LKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEITFR 486 (700)
Q Consensus 408 ~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 486 (700)
|++..+|.. +..+++|++|++++|. +..++...++++++|+.|++++|.+.... +..+..+++|++|++++|
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLP------KGVFDKLTSLKELRLYNN 167 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCC------TTTTTTCTTCCEEECCSS
T ss_pred CcCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccC------HhHccCCcccceeEecCC
Confidence 999977754 5789999999999885 45566555788899999999888764321 122456677777776665
Q ss_pred cchhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEeccccccceeecccccccccCCccccCCccEE
Q 005367 487 RFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEV 566 (700)
Q Consensus 487 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L 566 (700)
.+..+. ...+..+++|+.|++++|. +..++...+. .+++|+.|
T Consensus 168 ~l~~~~---------------------------~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~---------~l~~L~~L 210 (270)
T 2o6q_A 168 QLKRVP---------------------------EGAFDKLTELKTLKLDNNQ-LKRVPEGAFD---------SLEKLKML 210 (270)
T ss_dssp CCSCCC---------------------------TTTTTTCTTCCEEECCSSC-CSCCCTTTTT---------TCTTCCEE
T ss_pred cCcEeC---------------------------hhHhccCCCcCEEECCCCc-CCcCCHHHhc---------cccCCCEE
Confidence 433211 1234455667777776664 3323222222 35666666
Q ss_pred eeecCc
Q 005367 567 TVRFCR 572 (700)
Q Consensus 567 ~l~~~~ 572 (700)
++++++
T Consensus 211 ~l~~N~ 216 (270)
T 2o6q_A 211 QLQENP 216 (270)
T ss_dssp ECCSSC
T ss_pred EecCCC
Confidence 666653
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.65 E-value=1.8e-16 Score=158.60 Aligned_cols=157 Identities=24% Similarity=0.321 Sum_probs=117.5
Q ss_pred ccccccccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCc-cccccccc
Q 005367 322 ADVRGWEMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPM-GISKLVSL 400 (700)
Q Consensus 322 ~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~-~~~~l~~L 400 (700)
.....+++++.|++.++.++.++.+..+++|++|++++|.++... .+..+++|++|++++| .++.++. .++.+++|
T Consensus 35 ~~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 35 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNL 111 (272)
T ss_dssp ECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTC
T ss_pred cccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCC-ccCccChhHhcCCcCC
Confidence 345566788899999998888888888999999999999887753 4788899999999998 4555543 46888899
Q ss_pred ceeccccCcccccchh-hhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcc
Q 005367 401 QLLDISYTRVRELPEE-LKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLE 479 (700)
Q Consensus 401 ~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~ 479 (700)
++|++++|++..++.. ++.+++|++|++++|. +..++...++++++|+.|++++|.+... .+..+..+++|+
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~l~~L~ 184 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSL------PEGVFDKLTQLK 184 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCC------CTTTTTTCTTCC
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCcc------CHHHhcCCccCC
Confidence 9999999988876655 6788899999998884 4566665567888888888888776432 112245566666
Q ss_pred eEEEEEecc
Q 005367 480 VLEITFRRF 488 (700)
Q Consensus 480 ~L~l~~~~~ 488 (700)
.|++++|.+
T Consensus 185 ~L~L~~N~l 193 (272)
T 3rfs_A 185 DLRLYQNQL 193 (272)
T ss_dssp EEECCSSCC
T ss_pred EEECCCCcC
Confidence 666665543
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.65 E-value=2.1e-17 Score=171.08 Aligned_cols=131 Identities=18% Similarity=0.123 Sum_probs=74.5
Q ss_pred CceeEEEecCCCCcccccccccCCCcceEEEccCCccccc-CCcccccccccceeccccCccc-ccchhhhcCCCCCEEe
Q 005367 350 PHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQ-LPMGISKLVSLQLLDISYTRVR-ELPEELKALVNLRCLN 427 (700)
Q Consensus 350 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-lp~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~ 427 (700)
++++.|++++|.+.+..+. +..+++|++|++++|..... ++..+..+++|++|++++|.+. ..+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 4566666666665555554 33566666666666632222 4555566666666666666665 4555566666666666
Q ss_pred cccccCccc--cchhhhcCCCccceeecccc-CcccccCcccchHHHHhcCC-CcceEEEEEec
Q 005367 428 LDWAGELVK--VPQQLLSNFSRLRVLRMFAT-GLISFYSWHENVAEELLGLK-YLEVLEITFRR 487 (700)
Q Consensus 428 l~~~~~~~~--~p~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~ 487 (700)
+++|..+.. ++.. +.++++|++|++++| .+.. ...+..+..++ +|++|++++|.
T Consensus 149 L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~-----~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 149 LSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTE-----KHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp CTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCH-----HHHHHHHHHSCTTCCEEECCSCG
T ss_pred CCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcCh-----HHHHHHHHhcccCCCEEEeCCCc
Confidence 666633332 3332 556666666666666 4421 12344556666 66776666663
No 85
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.64 E-value=2.6e-17 Score=184.62 Aligned_cols=82 Identities=17% Similarity=0.216 Sum_probs=47.2
Q ss_pred cccccceeeeeccccccC-----CCCC-CCCCceeEEEecCCC--Ccc-cccccccCCCcceEEEccCCcccccCCcccc
Q 005367 325 RGWEMGRRLSLMKNSIKN-----LPTI-PTCPHLLTLFLNRNP--LTT-IAGGFFQSMPCLTVLKMSGNETLRQLPMGIS 395 (700)
Q Consensus 325 ~~~~~l~~l~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~--~~~-~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~ 395 (700)
..+++|+.|++++|.++. ++.+ ..+++|+.|++++|. +.. .....+..+++|++|++++|..++.++..+.
T Consensus 153 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~ 232 (594)
T 2p1m_B 153 ATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQ 232 (594)
T ss_dssp HHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHH
T ss_pred HhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHh
Confidence 355677777777766543 2222 356677777777765 211 1122234567777777777754555555566
Q ss_pred cccccceeccc
Q 005367 396 KLVSLQLLDIS 406 (700)
Q Consensus 396 ~l~~L~~L~l~ 406 (700)
.+++|++|++.
T Consensus 233 ~~~~L~~L~l~ 243 (594)
T 2p1m_B 233 RAPQLEELGTG 243 (594)
T ss_dssp HCTTCSEEECS
T ss_pred cCCcceEcccc
Confidence 66666666644
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=1.2e-15 Score=149.42 Aligned_cols=103 Identities=12% Similarity=0.029 Sum_probs=60.0
Q ss_pred EEEEeccccccceeecccccccccCCccccCCcc-EEeeecCcCcccccc-cccCCCCceEEeeeccccccccccccCCC
Q 005367 531 TLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLE-EVTVRFCRKLKHLTF-LVFAPNLKSISVCLCDDMEEIISAGEFDD 608 (700)
Q Consensus 531 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~l~~-l~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 608 (700)
.|+++++..+..++...+. .+++|+ +|+++++ .+..++. ....++|+.|+++++..++.+..
T Consensus 134 ~L~l~~N~~l~~i~~~~~~---------~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~------ 197 (239)
T 2xwt_C 134 ILEITDNPYMTSIPVNAFQ---------GLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK------ 197 (239)
T ss_dssp EEEEESCTTCCEECTTTTT---------TTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECT------
T ss_pred EEECCCCcchhhcCccccc---------chhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCH------
Confidence 6666666444444333332 466677 7777665 3334432 22226777777777644554433
Q ss_pred CCCccCCCCCCC-CccceeeccCcccccccccCCCCCCCccEEEEcCCCCC
Q 005367 609 IPEMTGIISSPF-AKLQRLRLEGLGRLKSIYWKPLPLPRLKELEVRGCDSL 658 (700)
Q Consensus 609 ~~~~~~~~~~~~-~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~~C~~L 658 (700)
..+..+ ++|+.|++++ ..++.++.. .+++|++|+++++..|
T Consensus 198 ------~~~~~l~~~L~~L~l~~-N~l~~l~~~--~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 198 ------DAFGGVYSGPSLLDVSQ-TSVTALPSK--GLEHLKELIARNTWTL 239 (239)
T ss_dssp ------TTTTTCSBCCSEEECTT-CCCCCCCCT--TCTTCSEEECTTC---
T ss_pred ------HHhhccccCCcEEECCC-CccccCChh--HhccCceeeccCccCC
Confidence 345566 7788888877 366666643 6788888888877654
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.63 E-value=1.4e-15 Score=152.01 Aligned_cols=189 Identities=21% Similarity=0.311 Sum_probs=154.5
Q ss_pred cceEEEcCCCCCCCCccccccccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcc
Q 005367 307 EGFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNET 386 (700)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 386 (700)
-..+.+.++.+..+ ..+..+++|+.|++++|.+..++.+..+++|++|++++|.++..++..+..+++|++|++++| .
T Consensus 43 L~~L~l~~~~i~~~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~ 120 (272)
T 3rfs_A 43 IDQIIANNSDIKSV-QGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-Q 120 (272)
T ss_dssp CCEEECTTSCCCCC-TTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-C
T ss_pred eeeeeeCCCCcccc-cccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC-c
Confidence 34566777777777 458889999999999999999988999999999999999999999988899999999999999 4
Q ss_pred cccCC-cccccccccceeccccCcccccchh-hhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCc
Q 005367 387 LRQLP-MGISKLVSLQLLDISYTRVRELPEE-LKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSW 464 (700)
Q Consensus 387 ~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 464 (700)
++.++ ..++.+++|++|++++|++..++.. ++.+++|+.|++++|. +..++...++++++|+.|++++|.+...
T Consensus 121 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~--- 196 (272)
T 3rfs_A 121 LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSV--- 196 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCC---
T ss_pred CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCCcc---
Confidence 55555 4478999999999999999977765 6899999999999995 5567766578999999999999987542
Q ss_pred ccchHHHHhcCCCcceEEEEEecchhhHhhhhcccccccchhhhccccC
Q 005367 465 HENVAEELLGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFD 513 (700)
Q Consensus 465 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 513 (700)
.+..+..+++|+.|++++|.+.. .++.++.+.++.+.
T Consensus 197 ---~~~~~~~l~~L~~L~l~~N~~~~---------~~~~l~~l~~~~n~ 233 (272)
T 3rfs_A 197 ---PDGVFDRLTSLQYIWLHDNPWDC---------TCPGIRYLSEWINK 233 (272)
T ss_dssp ---CTTTTTTCTTCCEEECCSSCBCC---------CTTTTHHHHHHHHH
T ss_pred ---CHHHHhCCcCCCEEEccCCCccc---------cCcHHHHHHHHHHh
Confidence 22346789999999999886542 12345555555443
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.63 E-value=1.4e-15 Score=157.99 Aligned_cols=236 Identities=19% Similarity=0.218 Sum_probs=157.5
Q ss_pred eEEEcCCCCCCCCccccccccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcc-cccccccCCCcceEE-EccCC
Q 005367 309 FLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTT-IAGGFFQSMPCLTVL-KMSGN 384 (700)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L-~L~~~ 384 (700)
.+...+.+++.+|..+. ++++.|++++|.++.++ .|..+++|++|+|++|.+.+ +++..|.++++++.+ .+++|
T Consensus 13 ~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp EEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred EEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 34556677788877663 57788888888888877 37778888888888887644 455567777776654 44444
Q ss_pred cccccC-CcccccccccceeccccCcccccchh-hhcCCCCCEEecccccCccccchhhhcCCC-ccceeeccccCcccc
Q 005367 385 ETLRQL-PMGISKLVSLQLLDISYTRVRELPEE-LKALVNLRCLNLDWAGELVKVPQQLLSNFS-RLRVLRMFATGLISF 461 (700)
Q Consensus 385 ~~~~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~-~L~~L~l~~~~~~~~ 461 (700)
.+..+ |..+..+++|++|++++|++..+|.. +....++..+++.++..+..++...+..+. .++.|++++|.+...
T Consensus 91 -~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 91 -NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp -TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred -cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 45555 45577788888888888877766543 345566777777666566666654444443 566777776665321
Q ss_pred cCcccchHHHHhcCCCcceEEEEEecchhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEecccccc
Q 005367 462 YSWHENVAEELLGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIK 541 (700)
Q Consensus 462 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~ 541 (700)
+..+....+| +.+.+.++..++.++-..+..+++|+.|+++++. ++
T Consensus 170 -------~~~~f~~~~L--------------------------~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~ 215 (350)
T 4ay9_X 170 -------HNSAFNGTQL--------------------------DELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IH 215 (350)
T ss_dssp -------CTTSSTTEEE--------------------------EEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CC
T ss_pred -------Chhhccccch--------------------------hHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cC
Confidence 1112222333 4444444444445544567788999999998875 44
Q ss_pred ceeecccccccccCCccccCCccEEeeecCcCcccccccccCCCCceEEeee
Q 005367 542 GLKIDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLTFLVFAPNLKSISVCL 593 (700)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~ 593 (700)
.++. ..+.+|++|.+.++..++.+|.+..+++|+.+++.+
T Consensus 216 ~lp~------------~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 216 SLPS------------YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp CCCS------------SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred ccCh------------hhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 3332 237789999999998999999999999999998864
No 89
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.62 E-value=7.5e-17 Score=164.80 Aligned_cols=244 Identities=18% Similarity=0.196 Sum_probs=123.1
Q ss_pred CCceeEEEecCCCCcccccccccCCCcceEEEccCCcc-cccCCcccc-------cccccceeccccCccc-ccchhh--
Q 005367 349 CPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNET-LRQLPMGIS-------KLVSLQLLDISYTRVR-ELPEEL-- 417 (700)
Q Consensus 349 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~lp~~~~-------~l~~L~~L~l~~~~l~-~lp~~~-- 417 (700)
.++|+.|++++|.+ .++.... .. |+.|+|++|.. ...+|..+. .+++|++|++++|++. .+|..+
T Consensus 42 ~~~L~~l~l~~n~l-~~p~~~~-~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE-ADLGQFT-DI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT-CCCHHHH-HH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc-ccHHHHH-HH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 34555566666655 3333221 11 55555655522 112333333 4556666666666555 455443
Q ss_pred hcCCCCCEEecccccCccccchhhhcCC-----CccceeeccccCcccccCcccchHHHHhcCCCcceEEEEEecchhhH
Q 005367 418 KALVNLRCLNLDWAGELVKVPQQLLSNF-----SRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEITFRRFEAYQ 492 (700)
Q Consensus 418 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 492 (700)
..+++|++|++++|.. ...|.. ++.+ ++|++|++++|.+... .+..++.+++|++|++++|.+.+..
T Consensus 118 ~~l~~L~~L~Ls~N~l-~~~~~~-~~~l~~~~~~~L~~L~L~~N~l~~~------~~~~~~~l~~L~~L~Ls~N~l~~~~ 189 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSW-ATRDAW-LAELQQWLKPGLKVLSIAQAHSLNF------SCEQVRVFPALSTLDLSDNPELGER 189 (312)
T ss_dssp CCSCCCSEEEEESCBC-SSSSSH-HHHHHTTCCTTCCEEEEESCSCCCC------CTTTCCCCSSCCEEECCSCTTCHHH
T ss_pred hcCCCccEEEccCCCC-cchhHH-HHHHHHhhcCCCcEEEeeCCCCccc------hHHHhccCCCCCEEECCCCCcCcch
Confidence 5566666666665543 222332 3333 5566666665554221 1233455555666666555533211
Q ss_pred hhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEecccccc--ceeecccccccccCCccccCCccEEeeec
Q 005367 493 TFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIK--GLKIDYKDMVQKSRQPYVFRSLEEVTVRF 570 (700)
Q Consensus 493 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~--~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 570 (700)
..... ..+..+++|++|++++|.... .+..... ..+++|++|++++
T Consensus 190 ~~~~~-----------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~---------~~l~~L~~L~Ls~ 237 (312)
T 1wwl_A 190 GLISA-----------------------LCPLKFPTLQVLALRNAGMETPSGVCSALA---------AARVQLQGLDLSH 237 (312)
T ss_dssp HHHHH-----------------------SCTTSCTTCCEEECTTSCCCCHHHHHHHHH---------HTTCCCSEEECTT
T ss_pred HHHHH-----------------------HHhccCCCCCEEECCCCcCcchHHHHHHHH---------hcCCCCCEEECCC
Confidence 10000 112456677777777665221 1111111 1356777777777
Q ss_pred CcCccc-c--cccccCCCCceEEeeeccccccccccccCCCCCCccCCCCCCCCccceeeccCcccccccccCCCCCCCc
Q 005367 571 CRKLKH-L--TFLVFAPNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPFAKLQRLRLEGLGRLKSIYWKPLPLPRL 647 (700)
Q Consensus 571 ~~~l~~-l--~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L 647 (700)
+. +.. . +.+..+++|++|+++++. ++.++. .+. ++|++|+++++ .++.++. ...+++|
T Consensus 238 N~-l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~-------------~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L 298 (312)
T 1wwl_A 238 NS-LRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPK-------------GLP--AKLSVLDLSYN-RLDRNPS-PDELPQV 298 (312)
T ss_dssp SC-CCSSCCCSCCCCCTTCCEEECTTSC-CSSCCS-------------SCC--SEEEEEECCSS-CCCSCCC-TTTSCEE
T ss_pred Cc-CCcccchhhhhhcCCCCEEECCCCc-cChhhh-------------hcc--CCceEEECCCC-CCCCChh-HhhCCCC
Confidence 64 333 2 234556777777777753 332211 111 67777777764 5666654 4557777
Q ss_pred cEEEEcCC
Q 005367 648 KELEVRGC 655 (700)
Q Consensus 648 ~~L~i~~C 655 (700)
++|++++.
T Consensus 299 ~~L~L~~N 306 (312)
T 1wwl_A 299 GNLSLKGN 306 (312)
T ss_dssp EEEECTTC
T ss_pred CEEeccCC
Confidence 77777765
No 90
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.61 E-value=2.3e-15 Score=151.65 Aligned_cols=172 Identities=28% Similarity=0.353 Sum_probs=146.1
Q ss_pred ceEEEcCCCCCCCCccccccccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCc
Q 005367 308 GFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNE 385 (700)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 385 (700)
..+...+.++..+|..+. +.++.|++++|.+..++ .+..+++|+.|++++|.++.++.. ..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N- 87 (290)
T 1p9a_G 13 LEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHN- 87 (290)
T ss_dssp CEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSS-
T ss_pred cEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCC-
Confidence 446677888999988775 78999999999998876 688999999999999999887664 78999999999999
Q ss_pred ccccCCcccccccccceeccccCcccccc-hhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCc
Q 005367 386 TLRQLPMGISKLVSLQLLDISYTRVRELP-EELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSW 464 (700)
Q Consensus 386 ~~~~lp~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 464 (700)
.++.+|..+..+++|++|++++|+++.+| ..+..+++|+.|++++|. +..+|...+..+++|+.|++++|.+....
T Consensus 88 ~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~-- 164 (290)
T 1p9a_G 88 QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTELP-- 164 (290)
T ss_dssp CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCCC--
T ss_pred cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCCccC--
Confidence 67889988999999999999999999887 458899999999999985 56777776889999999999999875421
Q ss_pred ccchHHHHhcCCCcceEEEEEecchhh
Q 005367 465 HENVAEELLGLKYLEVLEITFRRFEAY 491 (700)
Q Consensus 465 ~~~~~~~l~~l~~L~~L~l~~~~~~~~ 491 (700)
...+..+++|+.|++++|.+..+
T Consensus 165 ----~~~~~~l~~L~~L~L~~N~l~~i 187 (290)
T 1p9a_G 165 ----AGLLNGLENLDTLLLQENSLYTI 187 (290)
T ss_dssp ----TTTTTTCTTCCEEECCSSCCCCC
T ss_pred ----HHHhcCcCCCCEEECCCCcCCcc
Confidence 12356789999999998876643
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.60 E-value=5.1e-15 Score=146.04 Aligned_cols=173 Identities=23% Similarity=0.334 Sum_probs=147.0
Q ss_pred ceEEEcCCCCCCCCccccccccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCc
Q 005367 308 GFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNE 385 (700)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 385 (700)
..+...+.++..+|..+. +.++.|++++|.+..++ .+..+++|++|++++|.++..++..+..+++|++|+|++|
T Consensus 17 ~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n- 93 (251)
T 3m19_A 17 KEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN- 93 (251)
T ss_dssp TEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-
T ss_pred eEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-
Confidence 456778889999988776 68999999999999887 5889999999999999999999888999999999999999
Q ss_pred ccccCC-cccccccccceeccccCcccccchh-hhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccC
Q 005367 386 TLRQLP-MGISKLVSLQLLDISYTRVRELPEE-LKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYS 463 (700)
Q Consensus 386 ~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 463 (700)
.++.+| ..+..+++|++|++++|+++.+|.. +..+++|+.|++++|. +..++...++++++|+.|++++|.+...
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~-- 170 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSV-- 170 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCC--
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCcc--
Confidence 455555 5578899999999999999988776 5889999999999984 5677765588999999999999987542
Q ss_pred cccchHHHHhcCCCcceEEEEEecchh
Q 005367 464 WHENVAEELLGLKYLEVLEITFRRFEA 490 (700)
Q Consensus 464 ~~~~~~~~l~~l~~L~~L~l~~~~~~~ 490 (700)
.+..+..+++|+.|++++|.+..
T Consensus 171 ----~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 171 ----PHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp ----CTTTTTTCTTCCEEECCSCCBCT
T ss_pred ----CHHHHhCCCCCCEEEeeCCceeC
Confidence 22356788999999999988753
No 92
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.59 E-value=8e-17 Score=180.59 Aligned_cols=307 Identities=16% Similarity=0.145 Sum_probs=175.2
Q ss_pred ccccccceeeeeccccccCCC-----C-CCCCCceeEEEecCCC-CcccccccccCCCcceEEEccCCcc------cccC
Q 005367 324 VRGWEMGRRLSLMKNSIKNLP-----T-IPTCPHLLTLFLNRNP-LTTIAGGFFQSMPCLTVLKMSGNET------LRQL 390 (700)
Q Consensus 324 ~~~~~~l~~l~l~~~~~~~l~-----~-~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~------~~~l 390 (700)
...+++|+.|+++++. ..+. . ...+++|+.|++++|. +.. .+..+..+++|+.|++..+.. +..+
T Consensus 180 ~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l 257 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGL 257 (594)
T ss_dssp CTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHH
T ss_pred hhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHH
Confidence 3466799999999886 2222 1 2457999999999994 444 555678899999999776631 2334
Q ss_pred Cccccccccccee-ccccCcccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchH
Q 005367 391 PMGISKLVSLQLL-DISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVA 469 (700)
Q Consensus 391 p~~~~~l~~L~~L-~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 469 (700)
+..+.++++|+.| .+.......++..+..+++|++|++++|..........+.++++|++|++.+| +. .....
T Consensus 258 ~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~-----~~~l~ 331 (594)
T 2p1m_B 258 SVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IE-----DAGLE 331 (594)
T ss_dssp HHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GH-----HHHHH
T ss_pred HHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cC-----HHHHH
Confidence 4466777778877 44444444566666677888888888776322222233567788888888766 21 12222
Q ss_pred HHHhcCCCcceEEEEE---------ecchhhHhhhhcccccccchhhhccccCCCceeeecCcC-ccccccEEEEe----
Q 005367 470 EELLGLKYLEVLEITF---------RRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLA-DLEQLNTLIFY---- 535 (700)
Q Consensus 470 ~~l~~l~~L~~L~l~~---------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~---- 535 (700)
.....+++|++|++.. +.+.. ..+......+++|+.|.+ +|..++...+..+. .+++|+.|+++
T Consensus 332 ~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~-~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~ 409 (594)
T 2p1m_B 332 VLASTCKDLRELRVFPSEPFVMEPNVALTE-QGLVSVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEP 409 (594)
T ss_dssp HHHHHCTTCCEEEEECSCTTCSSCSSCCCH-HHHHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESST
T ss_pred HHHHhCCCCCEEEEecCcccccccCCCCCH-HHHHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccC
Confidence 3334577888887743 22221 111111122346777733 44444444433343 36788888887
Q ss_pred -ccccccceeecccccccccCCccccCCccEEeeecCcCccccccccc-CCCCceEEeeeccccccccccccCCCCCCcc
Q 005367 536 -SCDWIKGLKIDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLTFLVF-APNLKSISVCLCDDMEEIISAGEFDDIPEMT 613 (700)
Q Consensus 536 -~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~-l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 613 (700)
+|..++..+.+... ..-...+++|++|++++.-.-..++.++. +++|+.|++++|. +++... +
T Consensus 410 ~~~~~l~~~~~~~~~----~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~-------~--- 474 (594)
T 2p1m_B 410 KAPDYLTLEPLDIGF----GAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGM-------H--- 474 (594)
T ss_dssp TCCCTTTCCCTHHHH----HHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHH-------H---
T ss_pred CCcccccCCchhhHH----HHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCC-CcHHHH-------H---
Confidence 44444422211000 00012467788888865211122333443 7788888887765 322211 0
Q ss_pred CCCCCCCCccceeeccCccccccccc--CCCCCCCccEEEEcCCCC
Q 005367 614 GIISSPFAKLQRLRLEGLGRLKSIYW--KPLPLPRLKELEVRGCDS 657 (700)
Q Consensus 614 ~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~~~~~L~~L~i~~C~~ 657 (700)
.....+++|++|+|++|+. +.... ....+++|++|++++|+.
T Consensus 475 -~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 475 -HVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp -HHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred -HHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 1124577788888887754 32221 123467888888888864
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.58 E-value=4.2e-15 Score=149.90 Aligned_cols=152 Identities=22% Similarity=0.303 Sum_probs=116.2
Q ss_pred cccccccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccccccccce
Q 005367 323 DVRGWEMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQL 402 (700)
Q Consensus 323 ~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~ 402 (700)
....+++++.|++++|.++.++.+..+++|++|++++|.++..++ +..+++|++|++++| .++.++ .++.+++|++
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~ 116 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKS 116 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCE
T ss_pred chhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC-cCCCCh-hhccCCCCCE
Confidence 344567888888888888888888888888888888888877766 778888888888888 566655 4788888888
Q ss_pred eccccCcccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcceEE
Q 005367 403 LDISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLE 482 (700)
Q Consensus 403 L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 482 (700)
|++++|++..++ .+..+++|+.|++++|. +..++. +.++++|+.|++++|.+... +. +..+++|+.|+
T Consensus 117 L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~N~l~~~-------~~-l~~l~~L~~L~ 184 (291)
T 1h6t_A 117 LSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQISDI-------VP-LAGLTKLQNLY 184 (291)
T ss_dssp EECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCCCC-------GG-GTTCTTCCEEE
T ss_pred EECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcchh--hccCCCCCEEEccCCccccc-------hh-hcCCCccCEEE
Confidence 888888888763 67788888888888874 344432 77888888888888876432 11 67788888888
Q ss_pred EEEecchh
Q 005367 483 ITFRRFEA 490 (700)
Q Consensus 483 l~~~~~~~ 490 (700)
+++|.+..
T Consensus 185 L~~N~i~~ 192 (291)
T 1h6t_A 185 LSKNHISD 192 (291)
T ss_dssp CCSSCCCB
T ss_pred CCCCcCCC
Confidence 88776543
No 94
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=4.9e-15 Score=140.24 Aligned_cols=154 Identities=18% Similarity=0.252 Sum_probs=129.1
Q ss_pred cccccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccccccccceec
Q 005367 325 RGWEMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQLLD 404 (700)
Q Consensus 325 ~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~ 404 (700)
..+++++.|++++|.++.++.+..+++|++|++++|.++... .+..+++|++|++++|......|..++.+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 566889999999999999998999999999999999776554 478999999999999954445778899999999999
Q ss_pred cccCccc-ccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcceEEE
Q 005367 405 ISYTRVR-ELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEI 483 (700)
Q Consensus 405 l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 483 (700)
+++|++. ..|..++.+++|++|++++|..+..++. +.++++|+.|++++|.+... + .+..+++|+.|++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~~-------~-~l~~l~~L~~L~l 188 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDY-------R-GIEDFPKLNQLYA 188 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCCC-------T-TGGGCSSCCEEEE
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcCh-------H-HhccCCCCCEEEe
Confidence 9999998 5777899999999999999975777774 88999999999999987432 1 5788999999999
Q ss_pred EEecchh
Q 005367 484 TFRRFEA 490 (700)
Q Consensus 484 ~~~~~~~ 490 (700)
++|.+..
T Consensus 189 ~~N~i~~ 195 (197)
T 4ezg_A 189 FSQTIGG 195 (197)
T ss_dssp CBC----
T ss_pred eCcccCC
Confidence 9887643
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=1.6e-14 Score=149.92 Aligned_cols=237 Identities=16% Similarity=0.153 Sum_probs=133.2
Q ss_pred eEEEecCCCCcccccccccCCCcceEEEccCCcccccCCc-ccccccccceeccccCccc-ccchh-hhcCCCCCEEecc
Q 005367 353 LTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPM-GISKLVSLQLLDISYTRVR-ELPEE-LKALVNLRCLNLD 429 (700)
Q Consensus 353 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~~l~-~lp~~-~~~l~~L~~L~l~ 429 (700)
++++.+++.++.+|..+ .+++++|+|++| .++.+|. .|.++++|++|++++|++. .+|.. +.++++|+.+...
T Consensus 12 ~~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL---PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCCSCCTTC---CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCCccCcCc---CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 55667777777666543 346777777777 5666654 4677777777777777664 44433 4566666654444
Q ss_pred cccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcceEEEEEecchhhHhhhhcccccccchhhhc
Q 005367 430 WAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFL 509 (700)
Q Consensus 430 ~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 509 (700)
.+..+..+++..+.++++|+.|++++|.+...... ......++..|++.
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~------~~~~~~~l~~l~l~------------------------- 136 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV------HKIHSLQKVLLDIQ------------------------- 136 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCC------TTCCBSSCEEEEEE-------------------------
T ss_pred cCCcccccCchhhhhccccccccccccccccCCch------hhcccchhhhhhhc-------------------------
Confidence 34455566554466677777777766665332110 01112223333332
Q ss_pred cccCCCceeeecCcCcc-ccccEEEEeccccccceeecccccccccCCccccCCccEEeeecCcCcccccc--cccCCCC
Q 005367 510 HEFDREESIDVAGLADL-EQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLTF--LVFAPNL 586 (700)
Q Consensus 510 ~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--l~~l~~L 586 (700)
++..+.......+..+ ..++.|+++++. ++.++.... ...+|++|.+.+++.++.+|. ++.+++|
T Consensus 137 -~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f----------~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L 204 (350)
T 4ay9_X 137 -DNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAF----------NGTQLDELNLSDNNNLEELPNDVFHGASGP 204 (350)
T ss_dssp -SCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTSS----------TTEEEEEEECTTCTTCCCCCTTTTTTEECC
T ss_pred -cccccccccccchhhcchhhhhhcccccc-ccCCChhhc----------cccchhHHhhccCCcccCCCHHHhccCccc
Confidence 2222222222233333 356677776654 333322222 245677777777667777653 5677777
Q ss_pred ceEEeeeccccccccccccCCCCCCccCCCCCCCCccceeeccCcccccccccCCCCCCCccEEEEc
Q 005367 587 KSISVCLCDDMEEIISAGEFDDIPEMTGIISSPFAKLQRLRLEGLGRLKSIYWKPLPLPRLKELEVR 653 (700)
Q Consensus 587 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~ 653 (700)
++|+++++ .++.++ ...|..|+.|.+.++..++.+|. ...+++|+.+++.
T Consensus 205 ~~LdLs~N-~l~~lp---------------~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 205 VILDISRT-RIHSLP---------------SYGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLT 254 (350)
T ss_dssp SEEECTTS-CCCCCC---------------SSSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECS
T ss_pred chhhcCCC-CcCccC---------------hhhhccchHhhhccCCCcCcCCC-chhCcChhhCcCC
Confidence 77777774 344331 23456666777666667777763 4456777777764
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.56 E-value=4e-16 Score=164.69 Aligned_cols=141 Identities=17% Similarity=0.109 Sum_probs=65.0
Q ss_pred CCCCceeEEEecCCCCccccc----ccccCCCcceEEEccCCcc--c-ccCCccc-------ccccccceeccccCcccc
Q 005367 347 PTCPHLLTLFLNRNPLTTIAG----GFFQSMPCLTVLKMSGNET--L-RQLPMGI-------SKLVSLQLLDISYTRVRE 412 (700)
Q Consensus 347 ~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~L~~~~~--~-~~lp~~~-------~~l~~L~~L~l~~~~l~~ 412 (700)
..+++|+.|++++|.+....+ ..+..+++|++|+|++|.. + ..+|..+ ..+++|++|++++|.+..
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 344555566666555444322 1244555566666655411 1 1222222 455566666666655553
Q ss_pred -----cchhhhcCCCCCEEecccccCccccchh---hhcCC---------CccceeeccccCcccccCcccchHHHHhcC
Q 005367 413 -----LPEELKALVNLRCLNLDWAGELVKVPQQ---LLSNF---------SRLRVLRMFATGLISFYSWHENVAEELLGL 475 (700)
Q Consensus 413 -----lp~~~~~l~~L~~L~l~~~~~~~~~p~~---~~~~l---------~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l 475 (700)
+|..+..+++|++|++++|......+.. .+..+ ++|++|++++|.+... ........+..+
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~l~~~l~~~ 186 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG--SMKEWAKTFQSH 186 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG--GHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH--HHHHHHHHHHhC
Confidence 4445555666666666655432111111 02222 5566666655554211 001111344555
Q ss_pred CCcceEEEEEecch
Q 005367 476 KYLEVLEITFRRFE 489 (700)
Q Consensus 476 ~~L~~L~l~~~~~~ 489 (700)
++|++|++++|.+.
T Consensus 187 ~~L~~L~L~~n~l~ 200 (386)
T 2ca6_A 187 RLLHTVKMVQNGIR 200 (386)
T ss_dssp TTCCEEECCSSCCC
T ss_pred CCcCEEECcCCCCC
Confidence 56666666655544
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.55 E-value=1.8e-14 Score=142.09 Aligned_cols=175 Identities=21% Similarity=0.300 Sum_probs=140.8
Q ss_pred ccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccC-Ccccccccccceeccc
Q 005367 328 EMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQL-PMGISKLVSLQLLDIS 406 (700)
Q Consensus 328 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~l~ 406 (700)
...+.++++++.++.+|.-- .++++.|++++|.+....+..+.++++|++|+|++|. ++.+ +..+..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECC
Confidence 35678999999999998422 2789999999999999998889999999999999994 5544 5568899999999999
Q ss_pred cCcccccch-hhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcceEEEEE
Q 005367 407 YTRVRELPE-ELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEITF 485 (700)
Q Consensus 407 ~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 485 (700)
+|+++.+|. .+..+++|++|++++|. +..++...+.++++|+.|++++|.+... .+..+..+++|+.|++++
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------~~~~~~~l~~L~~L~L~~ 164 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSI------PAGAFDKLTNLQTLSLST 164 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCC------CTTTTTTCTTCCEEECCS
T ss_pred CCcccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCcc------CHHHcCcCcCCCEEECCC
Confidence 999997775 46899999999999984 5677776678999999999999987532 123467889999999998
Q ss_pred ecchhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEeccc
Q 005367 486 RRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCD 538 (700)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 538 (700)
|.+..+.. ..+..+++|+.|++++|+
T Consensus 165 N~l~~~~~---------------------------~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 165 NQLQSVPH---------------------------GAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp SCCSCCCT---------------------------TTTTTCTTCCEEECCSCC
T ss_pred CcCCccCH---------------------------HHHhCCCCCCEEEeeCCc
Confidence 87553221 235567788888887766
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.55 E-value=1.4e-15 Score=155.29 Aligned_cols=32 Identities=9% Similarity=0.055 Sum_probs=16.8
Q ss_pred CCccEEeeecCcCcccccccccCCCCceEEeee
Q 005367 561 RSLEEVTVRFCRKLKHLTFLVFAPNLKSISVCL 593 (700)
Q Consensus 561 ~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~ 593 (700)
++|++|++++| .+..+|.+..+++|+.|++++
T Consensus 272 ~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 272 AKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDG 303 (310)
T ss_dssp SCCSCEECCSC-CCCSCCCTTSCCCCSCEECSS
T ss_pred CCCCEEECCCC-cCCCCchhhhCCCccEEECcC
Confidence 45555555554 344444445555555555554
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.54 E-value=2e-14 Score=158.99 Aligned_cols=103 Identities=23% Similarity=0.311 Sum_probs=57.1
Q ss_pred ccccccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCccccccccccee
Q 005367 324 VRGWEMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQLL 403 (700)
Q Consensus 324 ~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L 403 (700)
+..+++|+.|++++|.+..++.+..+++|+.|+|++|.+..+++ +..+++|+.|+|++| .+..+| .+..+++|++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEE
T ss_pred hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEE
Confidence 34455566666666666666555566666666666666555544 455666666666665 344443 45555555555
Q ss_pred ccccCcccccchhhhcCCCCCEEecccc
Q 005367 404 DISYTRVRELPEELKALVNLRCLNLDWA 431 (700)
Q Consensus 404 ~l~~~~l~~lp~~~~~l~~L~~L~l~~~ 431 (700)
++++|.+..++ .+..+++|+.|++++|
T Consensus 115 ~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N 141 (605)
T 1m9s_A 115 SLEHNGISDIN-GLVHLPQLESLYLGNN 141 (605)
T ss_dssp ECTTSCCCCCG-GGGGCTTCSEEECCSS
T ss_pred EecCCCCCCCc-cccCCCccCEEECCCC
Confidence 55555555442 3445555555555554
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.53 E-value=1.6e-14 Score=159.82 Aligned_cols=166 Identities=19% Similarity=0.304 Sum_probs=137.2
Q ss_pred ceEEEcCCCCCCCCccccccccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCccc
Q 005367 308 GFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETL 387 (700)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 387 (700)
..+.+.++.+..+| .+..+++|+.|++++|.+..++.+..+++|+.|+|++|.+...+ .+..+++|+.|+|++| .+
T Consensus 46 ~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N-~l 121 (605)
T 1m9s_A 46 DQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEHN-GI 121 (605)
T ss_dssp CCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT--TSTTCTTCCEEECTTS-CC
T ss_pred CEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh--hhccCCCCCEEEecCC-CC
Confidence 44566777777775 68889999999999999999888899999999999999988755 3789999999999999 56
Q ss_pred ccCCcccccccccceeccccCcccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccc
Q 005367 388 RQLPMGISKLVSLQLLDISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHEN 467 (700)
Q Consensus 388 ~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 467 (700)
..++ .+..+++|+.|++++|.+..+ ..+..+++|+.|++++|.. ..+++ +..+++|+.|++++|.+...
T Consensus 122 ~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l-~~~~~--l~~l~~L~~L~Ls~N~i~~l------ 190 (605)
T 1m9s_A 122 SDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQI-SDIVP--LAGLTKLQNLYLSKNHISDL------ 190 (605)
T ss_dssp CCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCC-CCCGG--GTTCTTCCEEECCSSCCCBC------
T ss_pred CCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcC-CCchh--hccCCCCCEEECcCCCCCCC------
Confidence 6654 688899999999999999887 5788999999999998854 55554 78899999999999887432
Q ss_pred hHHHHhcCCCcceEEEEEecchh
Q 005367 468 VAEELLGLKYLEVLEITFRRFEA 490 (700)
Q Consensus 468 ~~~~l~~l~~L~~L~l~~~~~~~ 490 (700)
..+..+++|+.|++++|.+..
T Consensus 191 --~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 191 --RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp --GGGTTCTTCSEEECCSEEEEC
T ss_pred --hHHccCCCCCEEEccCCcCcC
Confidence 347888999999998887654
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.52 E-value=1.1e-13 Score=134.34 Aligned_cols=147 Identities=27% Similarity=0.384 Sum_probs=120.9
Q ss_pred EEEcCCCCCCCCccccccccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCccc
Q 005367 310 LVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETL 387 (700)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 387 (700)
+...+.++..+|..+. ++++.|++++|.++.++ .+..+++|+.|++++|.+..+++..|..+++|++|+|++| .+
T Consensus 24 v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l 100 (229)
T 3e6j_A 24 VDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QL 100 (229)
T ss_dssp EECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred eEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cC
Confidence 4556777888887665 78999999999988875 4788899999999999988888887888999999999999 56
Q ss_pred ccCCc-ccccccccceeccccCcccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCccc
Q 005367 388 RQLPM-GISKLVSLQLLDISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLIS 460 (700)
Q Consensus 388 ~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~ 460 (700)
+.++. .+..+++|++|++++|++..+|..+..+++|++|++++|. +..++...+..+++|+.|++.+|.+..
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 66654 4678899999999999999998888899999999999884 566766557888999999998887643
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.52 E-value=1.2e-13 Score=139.21 Aligned_cols=167 Identities=19% Similarity=0.312 Sum_probs=144.3
Q ss_pred cceEEEcCCCCCCCCccccccccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcc
Q 005367 307 EGFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNET 386 (700)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 386 (700)
-..+.+.++.+..++ .+..+++|+.|++++|.++.++.+..+++|+.|++++|.++..+. +..+++|++|++++| .
T Consensus 48 L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n-~ 123 (291)
T 1h6t_A 48 IDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHN-G 123 (291)
T ss_dssp CCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTS-C
T ss_pred ccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh--hccCCCCCEEECCCC-c
Confidence 356778888888884 588899999999999999999889999999999999999887554 889999999999999 5
Q ss_pred cccCCcccccccccceeccccCcccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCccc
Q 005367 387 LRQLPMGISKLVSLQLLDISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHE 466 (700)
Q Consensus 387 ~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 466 (700)
++.++ .+..+++|++|++++|++..+ ..+..+++|+.|++++|. +..++. +..+++|+.|++++|.+...
T Consensus 124 i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~N~i~~l----- 193 (291)
T 1h6t_A 124 ISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHISDL----- 193 (291)
T ss_dssp CCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCBC-----
T ss_pred CCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCCCcCCCC-----
Confidence 66664 788999999999999999987 578899999999999985 455655 78999999999999987442
Q ss_pred chHHHHhcCCCcceEEEEEecchh
Q 005367 467 NVAEELLGLKYLEVLEITFRRFEA 490 (700)
Q Consensus 467 ~~~~~l~~l~~L~~L~l~~~~~~~ 490 (700)
..+..+++|+.|++++|.+..
T Consensus 194 ---~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 194 ---RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp ---GGGTTCTTCSEEEEEEEEEEC
T ss_pred ---hhhccCCCCCEEECcCCcccC
Confidence 247889999999999998654
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.51 E-value=7e-14 Score=132.25 Aligned_cols=148 Identities=19% Similarity=0.268 Sum_probs=128.4
Q ss_pred cceEEEcCCCCCCCCccccccccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcc
Q 005367 307 EGFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNET 386 (700)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 386 (700)
-..+.+.++.+..+| .+..+++|+.|++++|.++.++.+..+++|++|++++|.++...+..+..+++|++|++++|..
T Consensus 46 L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i 124 (197)
T 4ezg_A 46 LTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124 (197)
T ss_dssp CCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBC
T ss_pred ccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCcc
Confidence 356778888999887 7899999999999999999998999999999999999999886666789999999999999955
Q ss_pred cccCCcccccccccceeccccCc-ccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcc
Q 005367 387 LRQLPMGISKLVSLQLLDISYTR-VRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLI 459 (700)
Q Consensus 387 ~~~lp~~~~~l~~L~~L~l~~~~-l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~ 459 (700)
....|..++.+++|++|++++|. +..+| .+..+++|+.|++++|. +..++. +..+++|+.|++++|++.
T Consensus 125 ~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~--l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 125 DDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRG--IEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp BGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTT--GGGCSSCCEEEECBC---
T ss_pred CcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChHH--hccCCCCCEEEeeCcccC
Confidence 55577789999999999999997 88887 78999999999999985 455663 889999999999998864
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.51 E-value=3.6e-14 Score=135.58 Aligned_cols=145 Identities=28% Similarity=0.464 Sum_probs=109.6
Q ss_pred EEEcCCCCCCCCccccccccceeeeeccccccCCCC--CCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCccc
Q 005367 310 LVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLPT--IPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETL 387 (700)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 387 (700)
+...+.++..+|..+. ++++.|++++|.++.++. +..+++|++|++++|.++.+++..+..+++|++|++++| .+
T Consensus 12 v~c~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l 88 (208)
T 2o6s_A 12 VECYSQGRTSVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QL 88 (208)
T ss_dssp EECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred EEecCCCccCCCCCCC--CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cC
Confidence 4455667777776553 578888888888887773 678888888888888888887777788888888888888 45
Q ss_pred ccCCcc-cccccccceeccccCcccccchh-hhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCc
Q 005367 388 RQLPMG-ISKLVSLQLLDISYTRVRELPEE-LKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGL 458 (700)
Q Consensus 388 ~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~ 458 (700)
+.+|.. ++.+++|++|++++|++..++.. +..+++|++|++++|. +..++...+..+++|+.|++++|.+
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCe
Confidence 555543 67788888888888888876654 6778888888888774 4556655577788888888887765
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.51 E-value=7.1e-14 Score=138.59 Aligned_cols=160 Identities=19% Similarity=0.223 Sum_probs=135.7
Q ss_pred CCCCCCCCccccccccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcc
Q 005367 314 GSGLTEAPADVRGWEMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMG 393 (700)
Q Consensus 314 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~ 393 (700)
+..+..++ .+..+++|+.|++++|.++.++.+..+++|+.|++++|.++..++ +..+++|++|++++| .++.+|..
T Consensus 28 ~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N-~l~~l~~~ 103 (263)
T 1xeu_A 28 KQSVTDLV-SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN-RLKNLNGI 103 (263)
T ss_dssp CSCTTSEE-CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS-CCSCCTTC
T ss_pred CCCccccc-chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC-ccCCcCcc
Confidence 44555554 577789999999999999999999999999999999999998877 889999999999999 67777654
Q ss_pred cccccccceeccccCcccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHh
Q 005367 394 ISKLVSLQLLDISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELL 473 (700)
Q Consensus 394 ~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 473 (700)
.. ++|++|++++|+++.++ .+..+++|+.|++++|. +..++. ++.+++|+.|++++|.+... ..+.
T Consensus 104 ~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L~~N~i~~~--------~~l~ 169 (263)
T 1xeu_A 104 PS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEITNT--------GGLT 169 (263)
T ss_dssp CC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEECTTSCCCBC--------TTST
T ss_pred cc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEECCCCcCcch--------HHhc
Confidence 33 89999999999999876 58899999999999985 566663 88999999999999987542 4577
Q ss_pred cCCCcceEEEEEecchhh
Q 005367 474 GLKYLEVLEITFRRFEAY 491 (700)
Q Consensus 474 ~l~~L~~L~l~~~~~~~~ 491 (700)
.+++|+.|++++|.+...
T Consensus 170 ~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 170 RLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TCCCCCEEEEEEEEEECC
T ss_pred cCCCCCEEeCCCCcccCC
Confidence 899999999999987543
No 106
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.51 E-value=1.2e-14 Score=151.88 Aligned_cols=260 Identities=13% Similarity=0.086 Sum_probs=140.6
Q ss_pred eeccccccCC-CCC-CCCCceeEEEecCCCCccccc----ccccCCC-cceEEEccCCcccccCCcccccc-----cccc
Q 005367 334 SLMKNSIKNL-PTI-PTCPHLLTLFLNRNPLTTIAG----GFFQSMP-CLTVLKMSGNETLRQLPMGISKL-----VSLQ 401 (700)
Q Consensus 334 ~l~~~~~~~l-~~~-~~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~L~~~~~~~~lp~~~~~l-----~~L~ 401 (700)
.++.+.+... |.+ ...++|+.|++++|.++.... ..+..++ +|++|+|++|......+..+..+ ++|+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 4445555432 222 333457788888877776665 5566677 77888888773333334445443 7777
Q ss_pred eeccccCcccccc-hh----hhcC-CCCCEEecccccCccccchhh----hcC-CCccceeeccccCcccccCcccchHH
Q 005367 402 LLDISYTRVRELP-EE----LKAL-VNLRCLNLDWAGELVKVPQQL----LSN-FSRLRVLRMFATGLISFYSWHENVAE 470 (700)
Q Consensus 402 ~L~l~~~~l~~lp-~~----~~~l-~~L~~L~l~~~~~~~~~p~~~----~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~ 470 (700)
+|++++|.+...+ .. +..+ ++|+.|++++|.. +..+... +.. .++|++|++++|.+... .....+.
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~--~~~~l~~ 160 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF-SSKSSSEFKQAFSNLPASITSLNLRGNDLGIK--SSDELIQ 160 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG-GGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS--CHHHHHH
T ss_pred EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcC-CcHHHHHHHHHHHhCCCceeEEEccCCcCCHH--HHHHHHH
Confidence 8888777776333 22 3344 6777777777753 3333221 223 35777777777766421 1123344
Q ss_pred HHhcCC-CcceEEEEEecchhhHhhhhcccccccchhhhccccCCCceeeecCcCcc-ccccEEEEeccccccceeeccc
Q 005367 471 ELLGLK-YLEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADL-EQLNTLIFYSCDWIKGLKIDYK 548 (700)
Q Consensus 471 ~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~l~~~~~~~~ 548 (700)
.+..++ +|++|++++|.+......... ..+..+ ++|++|++++|. +.+.....+
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~-----------------------~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l 216 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELA-----------------------KFLASIPASVTSLDLSANL-LGLKSYAEL 216 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHH-----------------------HHHHTSCTTCCEEECTTSC-GGGSCHHHH
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHH-----------------------HHHHhCCCCCCEEECCCCC-CChhHHHHH
Confidence 455554 777777777665432210000 112233 478888887776 332111111
Q ss_pred ccccccCCccc-cCCccEEeeecCcCccccc------ccccCCCCceEEeeeccccccccccccCCCCCCccCCCCCCCC
Q 005367 549 DMVQKSRQPYV-FRSLEEVTVRFCRKLKHLT------FLVFAPNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPFA 621 (700)
Q Consensus 549 ~~~~~~~~~~~-~~~L~~L~l~~~~~l~~l~------~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 621 (700)
. ..... .++|++|++++| .+...+ .+..+++|+.|++++|. +.++.. .....++ ..+..++
T Consensus 217 ~-----~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~-~~~~~l~----~~~~~l~ 284 (362)
T 3goz_A 217 A-----YIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSK-EQCKALG----AAFPNIQ 284 (362)
T ss_dssp H-----HHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCH-HHHHHHH----TTSTTCC
T ss_pred H-----HHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCH-HHHHHHH----HHhccCC
Confidence 1 00011 357888888887 444432 24667888888888874 111110 0000011 2455778
Q ss_pred ccceeeccCcc
Q 005367 622 KLQRLRLEGLG 632 (700)
Q Consensus 622 ~L~~L~l~~c~ 632 (700)
+|+.|+++++.
T Consensus 285 ~L~~LdL~~N~ 295 (362)
T 3goz_A 285 KIILVDKNGKE 295 (362)
T ss_dssp EEEEECTTSCB
T ss_pred ceEEEecCCCc
Confidence 88888888753
No 107
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.50 E-value=1.8e-15 Score=159.65 Aligned_cols=172 Identities=16% Similarity=0.082 Sum_probs=127.2
Q ss_pred CCCCCccccccccceeeeeccccccCC-----C-CCCCCCceeEEEecCCCCcc---ccccc-------ccCCCcceEEE
Q 005367 317 LTEAPADVRGWEMGRRLSLMKNSIKNL-----P-TIPTCPHLLTLFLNRNPLTT---IAGGF-------FQSMPCLTVLK 380 (700)
Q Consensus 317 ~~~~~~~~~~~~~l~~l~l~~~~~~~l-----~-~~~~~~~L~~L~l~~~~~~~---~~~~~-------~~~~~~L~~L~ 380 (700)
...++..+..+++|+.|++++|.+... + .+..+++|++|++++|.+.. ..+.. +..+++|++|+
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 344556777788999999999988753 2 47789999999999985443 22222 36899999999
Q ss_pred ccCCcccc----cCCcccccccccceeccccCccc-----ccchhhhcC---------CCCCEEecccccCc-cccch--
Q 005367 381 MSGNETLR----QLPMGISKLVSLQLLDISYTRVR-----ELPEELKAL---------VNLRCLNLDWAGEL-VKVPQ-- 439 (700)
Q Consensus 381 L~~~~~~~----~lp~~~~~l~~L~~L~l~~~~l~-----~lp~~~~~l---------~~L~~L~l~~~~~~-~~~p~-- 439 (700)
|++|.... .+|..+..+++|++|++++|.+. .++..+..+ ++|++|++++|... ..++.
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 99995333 26777888999999999999887 233444455 89999999999654 23342
Q ss_pred hhhcCCCccceeeccccCcccccCcccchHH-HHhcCCCcceEEEEEecchh
Q 005367 440 QLLSNFSRLRVLRMFATGLISFYSWHENVAE-ELLGLKYLEVLEITFRRFEA 490 (700)
Q Consensus 440 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~ 490 (700)
..+..+++|+.|++++|.+.... ...... .+..+++|+.|++++|.+..
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g--~~~l~~~~l~~~~~L~~L~Ls~n~l~~ 230 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEG--IEHLLLEGLAYCQELKVLDLQDNTFTH 230 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHH--HHHHHHTTGGGCTTCCEEECCSSCCHH
T ss_pred HHHHhCCCcCEEECcCCCCCHhH--HHHHHHHHhhcCCCccEEECcCCCCCc
Confidence 23678899999999999874210 011233 67889999999999998753
No 108
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.48 E-value=3.1e-14 Score=145.24 Aligned_cols=173 Identities=21% Similarity=0.138 Sum_probs=96.7
Q ss_pred cceEEEcCCCCCC-CCccc--cccccceeeeeccccccCCC------CCCCCCceeEEEecCCCCcccccccccCCCcce
Q 005367 307 EGFLVYAGSGLTE-APADV--RGWEMGRRLSLMKNSIKNLP------TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLT 377 (700)
Q Consensus 307 ~~~~~~~~~~~~~-~~~~~--~~~~~l~~l~l~~~~~~~l~------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 377 (700)
-..+.+.++.+.. .|..+ ..+++|+.|++++|.+.... .+..+++|++|++++|.+...++..+..+++|+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 172 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT 172 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence 3445555555543 33444 56666777777776666421 223566777777777776666666666677777
Q ss_pred EEEccCCccccc--CC--cccccccccceeccccCcccccchh----hhcCCCCCEEecccccCccccchhhhcCC---C
Q 005367 378 VLKMSGNETLRQ--LP--MGISKLVSLQLLDISYTRVRELPEE----LKALVNLRCLNLDWAGELVKVPQQLLSNF---S 446 (700)
Q Consensus 378 ~L~L~~~~~~~~--lp--~~~~~l~~L~~L~l~~~~l~~lp~~----~~~l~~L~~L~l~~~~~~~~~p~~~~~~l---~ 446 (700)
+|+|++|...+. ++ ..++.+++|++|++++|+++.++.. ++.+++|++|++++|......|.. +..+ +
T Consensus 173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~ 251 (310)
T 4glp_A 173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-APRCMWSS 251 (310)
T ss_dssp EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CSSCCCCT
T ss_pred EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HHhccCcC
Confidence 777777643221 21 1234566677777777766654442 355667777777766543333443 3333 5
Q ss_pred ccceeeccccCcccccCcccchHHHHhcCCCcceEEEEEecch
Q 005367 447 RLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEITFRRFE 489 (700)
Q Consensus 447 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 489 (700)
+|++|++++|.+... +..+ .++|+.|++++|.+.
T Consensus 252 ~L~~L~Ls~N~l~~l-------p~~~--~~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 252 ALNSLNLSFAGLEQV-------PKGL--PAKLRVLDLSSNRLN 285 (310)
T ss_dssp TCCCEECCSSCCCSC-------CSCC--CSCCSCEECCSCCCC
T ss_pred cCCEEECCCCCCCch-------hhhh--cCCCCEEECCCCcCC
Confidence 666777666665421 1111 145666666655543
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.47 E-value=2.7e-13 Score=130.45 Aligned_cols=147 Identities=27% Similarity=0.408 Sum_probs=96.0
Q ss_pred eEEEcCCCCCCCCccccccccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcc
Q 005367 309 FLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNET 386 (700)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 386 (700)
.+...+.++..+|..+. +.++.|++++|.++.++ .+..+++|+.|++++|.++.+.+..|.++++|++|+|++| .
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~ 91 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-K 91 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-C
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-c
Confidence 34455666667766554 56777777777777666 4666777777777777777666666777777777777777 4
Q ss_pred cccCCcc-cccccccceeccccCccccc-chhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcc
Q 005367 387 LRQLPMG-ISKLVSLQLLDISYTRVREL-PEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLI 459 (700)
Q Consensus 387 ~~~lp~~-~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~ 459 (700)
++.+|.. +..+++|++|++++|++..+ |..+..+++|+.|++++|. +..++...+..+++|+.|++++|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 5555543 46677777777777777754 3446667777777777664 34455444666677777777766653
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.45 E-value=3e-13 Score=130.15 Aligned_cols=145 Identities=19% Similarity=0.279 Sum_probs=78.8
Q ss_pred EEEcCCCCCCCCccccccccceeeeeccccccCCC---CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcc
Q 005367 310 LVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLP---TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNET 386 (700)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 386 (700)
+...++.+..+|..+. ..++.|++++|.++.++ .+..+++|+.|++++|.++.+++..|..+++|++|+|++| .
T Consensus 16 l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~ 92 (220)
T 2v70_A 16 VDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-R 92 (220)
T ss_dssp EECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-C
T ss_pred eEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-c
Confidence 4445555555555443 34456666666665553 1455666666666666665555555556666666666666 3
Q ss_pred cccCC-cccccccccceeccccCccccc-chhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCc
Q 005367 387 LRQLP-MGISKLVSLQLLDISYTRVREL-PEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGL 458 (700)
Q Consensus 387 ~~~lp-~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~ 458 (700)
++.++ ..+..+++|++|++++|++..+ |..+..+++|+.|++++|.. ..+++..+..+++|+.|++++|.+
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI-TTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCC-CCBCTTTTTTCTTCCEEECCSCCE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcC-CEECHHHhcCCCCCCEEEecCcCC
Confidence 33333 3355566666666666666544 34455566666666665532 333222255556666666655554
No 111
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.44 E-value=2.6e-14 Score=149.16 Aligned_cols=176 Identities=15% Similarity=0.144 Sum_probs=124.2
Q ss_pred EcCCCCCC-CCccccccccceeeeeccccccCCC------CCCCCC-ceeEEEecCCCCcccccccccCC-----CcceE
Q 005367 312 YAGSGLTE-APADVRGWEMGRRLSLMKNSIKNLP------TIPTCP-HLLTLFLNRNPLTTIAGGFFQSM-----PCLTV 378 (700)
Q Consensus 312 ~~~~~~~~-~~~~~~~~~~l~~l~l~~~~~~~l~------~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~ 378 (700)
+..+++.. +|..+...++++.|++++|.++..+ .+..++ +|++|++++|.++...+..+..+ ++|++
T Consensus 5 ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 84 (362)
T 3goz_A 5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTS 84 (362)
T ss_dssp CCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred cccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccE
Confidence 34444443 3333444456999999999998876 356777 89999999999988766656554 99999
Q ss_pred EEccCCcccccCCccc----ccc-cccceeccccCcccccch-h----hhc-CCCCCEEecccccCcc----ccchhhhc
Q 005367 379 LKMSGNETLRQLPMGI----SKL-VSLQLLDISYTRVRELPE-E----LKA-LVNLRCLNLDWAGELV----KVPQQLLS 443 (700)
Q Consensus 379 L~L~~~~~~~~lp~~~----~~l-~~L~~L~l~~~~l~~lp~-~----~~~-l~~L~~L~l~~~~~~~----~~p~~~~~ 443 (700)
|+|++|......+..+ ..+ ++|++|++++|+++..+. . +.. .++|++|++++|.... .++.. +.
T Consensus 85 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~-l~ 163 (362)
T 3goz_A 85 LNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI-LA 163 (362)
T ss_dssp EECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH-HH
T ss_pred EECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH-Hh
Confidence 9999995333334433 334 899999999999985543 2 333 3699999999986543 23333 45
Q ss_pred CCC-ccceeeccccCcccccCcccchHHHHhcC-CCcceEEEEEecchh
Q 005367 444 NFS-RLRVLRMFATGLISFYSWHENVAEELLGL-KYLEVLEITFRRFEA 490 (700)
Q Consensus 444 ~l~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~ 490 (700)
.++ +|++|++++|.+... ........+..+ ++|++|++++|.+..
T Consensus 164 ~~~~~L~~L~Ls~n~l~~~--~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 164 AIPANVNSLNLRGNNLASK--NCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp TSCTTCCEEECTTSCGGGS--CHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred cCCccccEeeecCCCCchh--hHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 555 999999999987442 112233455666 599999999998765
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.44 E-value=4.2e-14 Score=140.21 Aligned_cols=168 Identities=22% Similarity=0.228 Sum_probs=136.4
Q ss_pred ccccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccccccccceecc
Q 005367 326 GWEMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQLLDI 405 (700)
Q Consensus 326 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l 405 (700)
.+.++..+++.++.++.++.+..+++|+.|++++|.++.++ .+..+++|++|++++| .++.++. ++.+++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence 35677888899999998888889999999999999988776 3789999999999999 6777776 889999999999
Q ss_pred ccCcccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcceEEEEE
Q 005367 406 SYTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEITF 485 (700)
Q Consensus 406 ~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 485 (700)
++|+++.+|.... ++|+.|++++|. +..++. +.++++|+.|++++|.+... ..+..+++|+.|++++
T Consensus 93 ~~N~l~~l~~~~~--~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~~~--------~~l~~l~~L~~L~L~~ 159 (263)
T 1xeu_A 93 NRNRLKNLNGIPS--ACLSRLFLDNNE-LRDTDS--LIHLKNLEILSIRNNKLKSI--------VMLGFLSKLEVLDLHG 159 (263)
T ss_dssp CSSCCSCCTTCCC--SSCCEEECCSSC-CSBSGG--GTTCTTCCEEECTTSCCCBC--------GGGGGCTTCCEEECTT
T ss_pred CCCccCCcCcccc--CcccEEEccCCc-cCCChh--hcCcccccEEECCCCcCCCC--------hHHccCCCCCEEECCC
Confidence 9999998875443 899999999985 455554 88999999999999987442 2477888999998887
Q ss_pred ecchhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEecccc
Q 005367 486 RRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDW 539 (700)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 539 (700)
|.+... ..+..+++|+.|+++++..
T Consensus 160 N~i~~~-----------------------------~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 160 NEITNT-----------------------------GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp SCCCBC-----------------------------TTSTTCCCCCEEEEEEEEE
T ss_pred CcCcch-----------------------------HHhccCCCCCEEeCCCCcc
Confidence 765443 2355678888888888763
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.44 E-value=3.4e-13 Score=140.59 Aligned_cols=172 Identities=22% Similarity=0.324 Sum_probs=140.3
Q ss_pred ceEEEcCCCCCCCCccccccccceeeeeccccccCCCC--CC-CCCceeEEEecCCCCcccccccccCCCcceEEEccCC
Q 005367 308 GFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLPT--IP-TCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGN 384 (700)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~ 384 (700)
..+...+.++..+|..+. ..++.|++++|.++.++. +. .+++|+.|++++|.++.+++..|..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 356677888999988765 568999999999998873 55 8999999999999999999888999999999999999
Q ss_pred cccccCC-cccccccccceeccccCccccc-chhhhcCCCCCEEecccccCccccchhhh---cCCCccceeeccccCcc
Q 005367 385 ETLRQLP-MGISKLVSLQLLDISYTRVREL-PEELKALVNLRCLNLDWAGELVKVPQQLL---SNFSRLRVLRMFATGLI 459 (700)
Q Consensus 385 ~~~~~lp-~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~---~~l~~L~~L~l~~~~~~ 459 (700)
.++.++ ..+..+++|++|++++|++..+ |..+..+++|+.|++++|. +..+|...+ ..+++|+.|++++|.+.
T Consensus 99 -~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 99 -HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp -CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred -cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 466655 4588899999999999999966 5678899999999999884 567777655 57999999999999875
Q ss_pred cccCcccchHHHHhcCCC--cceEEEEEecch
Q 005367 460 SFYSWHENVAEELLGLKY--LEVLEITFRRFE 489 (700)
Q Consensus 460 ~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~ 489 (700)
.. .+..+..++. ++.|++.+|.+.
T Consensus 177 ~l------~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KL------PLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CC------CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cc------CHHHhhhccHhhcceEEecCCCcc
Confidence 42 2345667776 488999988764
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.42 E-value=5.3e-13 Score=128.42 Aligned_cols=151 Identities=18% Similarity=0.279 Sum_probs=125.7
Q ss_pred eeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccccccccceeccccCcc
Q 005367 331 RRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQLLDISYTRV 410 (700)
Q Consensus 331 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~l 410 (700)
+.++..++.++.+|.- -.++|+.|++++|.++.+++..|..+++|++|+|++|......|..+..+++|++|++++|++
T Consensus 14 ~~v~c~~~~l~~iP~~-l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTN-LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCSSCCSS-CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCcCcCCCc-cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 4677888889988842 127999999999999999988899999999999999954444478899999999999999999
Q ss_pred cccchh-hhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcceEEEEEecch
Q 005367 411 RELPEE-LKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEITFRRFE 489 (700)
Q Consensus 411 ~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 489 (700)
+.+|.. +..+++|+.|++++|. +..++...+.++++|+.|++++|.+.... +..+..+++|+.|++++|.+.
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIA------KGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCC------TTTTTTCTTCCEEECCSSCEE
T ss_pred CccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEEC------HHHHhCCCCCCEEEeCCCCcC
Confidence 988876 5789999999999985 45555545899999999999999885431 234677899999999988764
No 115
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.41 E-value=9.4e-13 Score=125.70 Aligned_cols=165 Identities=24% Similarity=0.348 Sum_probs=129.4
Q ss_pred eeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcc-cccccccceeccccCc
Q 005367 331 RRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMG-ISKLVSLQLLDISYTR 409 (700)
Q Consensus 331 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~ 409 (700)
+.++..++.++.+|. ...++|++|++++|.++.+++..+..+++|++|++++| .++.+|.. +..+++|++|++++|+
T Consensus 10 ~~v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCc
Confidence 456667777777773 33579999999999999999888899999999999999 56666654 6889999999999999
Q ss_pred ccccchh-hhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcceEEEEEecc
Q 005367 410 VRELPEE-LKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEITFRRF 488 (700)
Q Consensus 410 l~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 488 (700)
++.+|.. +..+++|++|++++|. +..++...+.++++|+.|++++|.+... .+..+..+++|+.|++++|.+
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~------~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSV------PDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCC------CTTTTTTCTTCCEEECCSCCB
T ss_pred CCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCcccee------CHHHhccCCCccEEEecCCCe
Confidence 9987765 6899999999999885 5667766578999999999999987432 122367789999999998864
Q ss_pred hhhHhhhhcccccccchhhhccccC
Q 005367 489 EAYQTFLSSQKLRSCTQALFLHEFD 513 (700)
Q Consensus 489 ~~~~~~~~~~~~~~~L~~L~l~~~~ 513 (700)
.. .++.|+.|.++.+.
T Consensus 161 ~~---------~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 161 DC---------TCPGIRYLSEWINK 176 (208)
T ss_dssp CC---------CTTTTHHHHHHHHH
T ss_pred ec---------CCCCHHHHHHHHHh
Confidence 32 12355555555543
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.39 E-value=1.1e-12 Score=126.31 Aligned_cols=150 Identities=17% Similarity=0.289 Sum_probs=123.7
Q ss_pred eeeeeccccccCCCCCCCCCceeEEEecCCCCcccc-cccccCCCcceEEEccCCcccccCC-cccccccccceeccccC
Q 005367 331 RRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIA-GGFFQSMPCLTVLKMSGNETLRQLP-MGISKLVSLQLLDISYT 408 (700)
Q Consensus 331 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~ 408 (700)
+.++++++.++.+|. .-...++.|++++|.++..+ ...|..+++|++|+|++| .++.++ ..+..+++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC
Confidence 478899999999884 22456799999999999884 456889999999999999 466554 47999999999999999
Q ss_pred cccccchh-hhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcceEEEEEec
Q 005367 409 RVRELPEE-LKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEITFRR 487 (700)
Q Consensus 409 ~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 487 (700)
+++.++.. +..+++|+.|++++|.. ..+++..+.++++|+.|++++|.+... .+..+..+++|+.|++++|.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~------~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQITTV------APGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCC-CCBCTTSSTTCTTCSEEECTTSCCCCB------CTTTTTTCTTCCEEECCSCC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcC-CeECHhHcCCCccCCEEECCCCcCCEE------CHHHhcCCCCCCEEEecCcC
Confidence 99977664 88999999999999964 555444488999999999999987542 24567789999999999888
Q ss_pred ch
Q 005367 488 FE 489 (700)
Q Consensus 488 ~~ 489 (700)
+.
T Consensus 165 l~ 166 (220)
T 2v70_A 165 FN 166 (220)
T ss_dssp EE
T ss_pred Cc
Confidence 65
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.38 E-value=1.4e-12 Score=119.88 Aligned_cols=128 Identities=22% Similarity=0.247 Sum_probs=69.7
Q ss_pred ccceeeeecccccc--CCCC-CCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccccccccceec
Q 005367 328 EMGRRLSLMKNSIK--NLPT-IPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQLLD 404 (700)
Q Consensus 328 ~~l~~l~l~~~~~~--~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~ 404 (700)
++++.|++++|.++ .+|. +..+++|++|++++|.++.. ..+..+++|++|++++|.....+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45666666666655 5553 35556666666666665554 3355566666666666632222444444556666666
Q ss_pred cccCcccccc--hhhhcCCCCCEEecccccCccccch---hhhcCCCccceeeccccCc
Q 005367 405 ISYTRVRELP--EELKALVNLRCLNLDWAGELVKVPQ---QLLSNFSRLRVLRMFATGL 458 (700)
Q Consensus 405 l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~~p~---~~~~~l~~L~~L~l~~~~~ 458 (700)
+++|+++.+| ..+..+++|++|++++|. +...|. ..+..+++|+.|++++|..
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 6666665544 445556666666666553 233333 2355556666666555544
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.36 E-value=1.7e-12 Score=125.72 Aligned_cols=150 Identities=22% Similarity=0.317 Sum_probs=126.0
Q ss_pred ceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCc-ccccccccceeccccC
Q 005367 330 GRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPM-GISKLVSLQLLDISYT 408 (700)
Q Consensus 330 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~l~~~ 408 (700)
.+.++.+++.++.+|. .-.++|+.|++++|.++...+..+..+++|++|+|++| .++.+|. .+..+++|++|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC
Confidence 4457788888888884 23489999999999999998888999999999999999 5677764 4688999999999999
Q ss_pred cccccchh-hhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcceEEEEEec
Q 005367 409 RVRELPEE-LKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEITFRR 487 (700)
Q Consensus 409 ~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 487 (700)
+++.++.. +..+++|+.|++++|. +..+|.. +.++++|+.|++++|.+.... +..+..+++|+.|++.+|.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNK-LTELPRG-IERLTHLTHLALDQNQLKSIP------HGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTT-GGGCTTCSEEECCSSCCCCCC------TTTTTTCTTCCEEECTTSC
T ss_pred cCCccChhHhCcchhhCeEeccCCc-ccccCcc-cccCCCCCEEECCCCcCCccC------HHHHhCCCCCCEEEeeCCC
Confidence 99988765 6889999999999985 5688877 789999999999999875431 1346788999999999887
Q ss_pred ch
Q 005367 488 FE 489 (700)
Q Consensus 488 ~~ 489 (700)
+.
T Consensus 171 ~~ 172 (229)
T 3e6j_A 171 WD 172 (229)
T ss_dssp BC
T ss_pred cc
Confidence 64
No 119
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.35 E-value=1.9e-12 Score=141.55 Aligned_cols=134 Identities=23% Similarity=0.258 Sum_probs=95.3
Q ss_pred cceEEEcCCCCCCCCccccccccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcc
Q 005367 307 EGFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNET 386 (700)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 386 (700)
-..+.+.++++..+|..+. ++|+.|++++|.++.+| ..+++|++|++++|.++.++. +.. +|++|+|++| .
T Consensus 61 L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N-~ 131 (571)
T 3cvr_A 61 FSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNN-Q 131 (571)
T ss_dssp CSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSS-C
T ss_pred ccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCC-c
Confidence 3456667777777776553 67888888888887777 557788888888887777554 433 7888888887 4
Q ss_pred cccCCcccccccccceeccccCcccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCccc
Q 005367 387 LRQLPMGISKLVSLQLLDISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLIS 460 (700)
Q Consensus 387 ~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~ 460 (700)
++.+|. .+++|++|++++|+++.+|. .+++|+.|++++|. +..+|. +. ++|+.|++++|.+..
T Consensus 132 l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N~L~~ 194 (571)
T 3cvr_A 132 LTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTNLLES 194 (571)
T ss_dssp CSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSSCCSS
T ss_pred CCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCCCCCc
Confidence 555665 56778888888888777775 56778888888774 444665 43 778888888777643
No 120
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.35 E-value=1.5e-12 Score=120.60 Aligned_cols=140 Identities=19% Similarity=0.210 Sum_probs=72.4
Q ss_pred CCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccccccccceeccccCcccccchhh-hcCCC
Q 005367 344 PTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQLLDISYTRVRELPEEL-KALVN 422 (700)
Q Consensus 344 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~-~~l~~ 422 (700)
+.+..+.+|+.|++++|.++.+ +......++|++|++++| .++.+ ..++.+++|++|++++|+++.+|..+ ..+++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred HhcCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 3344455555555555555544 222222235666666665 34433 35555566666666666666555433 55666
Q ss_pred CCEEecccccCccccch-hhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcceEEEEEecchh
Q 005367 423 LRCLNLDWAGELVKVPQ-QLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEITFRRFEA 490 (700)
Q Consensus 423 L~~L~l~~~~~~~~~p~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 490 (700)
|++|++++|. +..+|. ..++++++|+.|++++|.+.... ......+..+++|+.|+++.|....
T Consensus 90 L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~---~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 90 LTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKK---HYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGST---THHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcH---hHHHHHHHHCCccceeCCCcCCHHH
Confidence 6666666553 344443 12555666666666666553211 0111235566667777776666543
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.35 E-value=1.9e-12 Score=116.24 Aligned_cols=124 Identities=23% Similarity=0.234 Sum_probs=72.2
Q ss_pred ccceeeeecccccc--CCC-CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccccccccceec
Q 005367 328 EMGRRLSLMKNSIK--NLP-TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQLLD 404 (700)
Q Consensus 328 ~~l~~l~l~~~~~~--~l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~ 404 (700)
++++.|++++|.++ .+| .+..+++|++|++++|.++.. ..+..+++|++|++++|.....+|..++.+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45666666666666 555 335666666666666666555 3356666666666666632222555555566666666
Q ss_pred cccCcccccc--hhhhcCCCCCEEecccccCccccch---hhhcCCCccceeecc
Q 005367 405 ISYTRVRELP--EELKALVNLRCLNLDWAGELVKVPQ---QLLSNFSRLRVLRMF 454 (700)
Q Consensus 405 l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~~p~---~~~~~l~~L~~L~l~ 454 (700)
+++|+++.++ ..++.+++|++|++++|. +...+. ..++.+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 6666666543 456666666666666663 333333 235556666666553
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.33 E-value=7.1e-12 Score=115.03 Aligned_cols=133 Identities=23% Similarity=0.239 Sum_probs=116.6
Q ss_pred cccceEEEcCCCCC--CCCccccccccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEcc
Q 005367 305 EKEGFLVYAGSGLT--EAPADVRGWEMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMS 382 (700)
Q Consensus 305 ~~~~~~~~~~~~~~--~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~ 382 (700)
..-..+.+.++.+. .+|..+..+++|+.|++++|.++.++.+..+++|++|++++|.++...+..+..+++|++|+++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 44567888888887 8888889999999999999999999889999999999999999998777777789999999999
Q ss_pred CCcccccCC--cccccccccceeccccCcccccch----hhhcCCCCCEEecccccCccccch
Q 005367 383 GNETLRQLP--MGISKLVSLQLLDISYTRVRELPE----ELKALVNLRCLNLDWAGELVKVPQ 439 (700)
Q Consensus 383 ~~~~~~~lp--~~~~~l~~L~~L~l~~~~l~~lp~----~~~~l~~L~~L~l~~~~~~~~~p~ 439 (700)
+| .++.+| ..+..+++|++|++++|.+..+|. .+..+++|++|++++|. ...+|.
T Consensus 104 ~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~ 164 (168)
T 2ell_A 104 GN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPD 164 (168)
T ss_dssp SS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCS
T ss_pred CC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC-hhhccc
Confidence 99 677765 678999999999999999998886 78899999999999985 344554
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.31 E-value=2.1e-12 Score=119.59 Aligned_cols=132 Identities=17% Similarity=0.199 Sum_probs=113.8
Q ss_pred cccccccceeeeeccccccCCCCCCCCC-ceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCccc-cccccc
Q 005367 323 DVRGWEMGRRLSLMKNSIKNLPTIPTCP-HLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGI-SKLVSL 400 (700)
Q Consensus 323 ~~~~~~~l~~l~l~~~~~~~l~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~-~~l~~L 400 (700)
.+.++.+++.|++++|.++.++.+..+. +|++|++++|.++.. ..+..+++|++|++++| .++.+|..+ +.+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCC-cccccCcchhhcCCCC
Confidence 4556789999999999999998877766 999999999999887 44889999999999999 577777554 889999
Q ss_pred ceeccccCcccccch--hhhcCCCCCEEecccccCccccchh---hhcCCCccceeeccccCc
Q 005367 401 QLLDISYTRVRELPE--ELKALVNLRCLNLDWAGELVKVPQQ---LLSNFSRLRVLRMFATGL 458 (700)
Q Consensus 401 ~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~p~~---~~~~l~~L~~L~l~~~~~ 458 (700)
++|++++|.+..+|. .+..+++|+.|++++|.. ...|.. .++.+++|+.|++++|..
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 999999999998887 788999999999999864 566653 478999999999998765
No 124
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.30 E-value=2.7e-11 Score=128.77 Aligned_cols=264 Identities=13% Similarity=0.084 Sum_probs=155.6
Q ss_pred CCCCcHHHHHHHHHhhcccC--CCCC-CEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhc--cC
Q 005367 1 MGGVGKTTLLTQINNKFVDN--PTDF-DYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLS--KK 75 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~--~~~f-~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~ 75 (700)
++|+|||+||+++++..... ...+ ..++|+++....+...+...++++++..... ...+..+....+...+. ++
T Consensus 60 ~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~ 138 (412)
T 1w5s_A 60 RVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQV-RGAPALDILKALVDNLYVENH 138 (412)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCC-TTCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhcCC
Confidence 58999999999999886211 0112 3468888877778899999999998754321 12345566666666664 67
Q ss_pred cEEEEEcCCCchh--------hhhhhcCc---CC-----CCcEEEEecCchhhhhccc---------CcceEeccCCChH
Q 005367 76 KFALLLDDLWERV--------DLKKIGVP---LP-----KNSAVVFTTRFVDVCGRME---------ARRTFKVECLSDE 130 (700)
Q Consensus 76 r~LlVlDdv~~~~--------~~~~l~~~---~~-----~gs~iiiTTr~~~~~~~~~---------~~~~~~l~~L~~~ 130 (700)
+++|||||++... .+..+... ++ .+..+|+||+..++...+. ....+++++++.+
T Consensus 139 ~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~ 218 (412)
T 1w5s_A 139 YLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSR 218 (412)
T ss_dssp EEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHH
T ss_pred eEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHH
Confidence 8999999997642 23222222 22 2345777887655322111 1123999999999
Q ss_pred hHHHHHHHHhcccccCCCCChHHHHHHHHHHhC------CCchHHHHHHHHh---cc--C---CChHHHHHHHHHHHhhh
Q 005367 131 AAWELFREKVGEETIESHHSIPELAQTVAKECG------GLPLALITIGRAM---AY--K---KTPEEWRYAIEVLRRSA 196 (700)
Q Consensus 131 ~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~------g~Plai~~~~~~l---~~--~---~~~~~~~~~l~~~~~~~ 196 (700)
++.++|..++.... ....-.++.+..+++.++ |.|..+..++... +. . -+.+.+...+.....
T Consensus 219 e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-- 295 (412)
T 1w5s_A 219 ELYTILEQRAELGL-RDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA-- 295 (412)
T ss_dssp HHHHHHHHHHHHHB-CTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhcC-CCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc--
Confidence 99999987653221 111233678899999999 9997655544322 11 1 122333322221100
Q ss_pred hhccCcchhhccchhcccCCCCccchhHHHhhhcCCC--CCceeeHHHHHHHHHHcC--CCCccccccchhhHHHHHHHH
Q 005367 197 SEFADLGKEVYPLLKFSYDCLPNDAIRSCFLYCCLYP--EDESIDKRDLIDCWICEG--FLDEAKFGTQNQGYYIVGTLV 272 (700)
Q Consensus 197 ~~~~~~~~~~~~~l~~sy~~L~~~~~~~~~l~~~~fp--~~~~i~~~~l~~~w~~~g--~~~~~~~~~~~~~~~~~~~L~ 272 (700)
...+.-.+..|++ ..+.++..++.+. ....+....+...+.... .... ..........+++.|.
T Consensus 296 ----------~~~~~~~l~~l~~-~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~L~ 363 (412)
T 1w5s_A 296 ----------ASIQTHELEALSI-HELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNV-KPRGYTQYHIYLKHLT 363 (412)
T ss_dssp --------------CCSSSSSCH-HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCC-CCCCHHHHHHHHHHHH
T ss_pred ----------cchHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHH
Confidence 2334557788998 7888887777653 333455555444332100 0000 0112245667899999
Q ss_pred Hhhhhccc
Q 005367 273 HACLLEEV 280 (700)
Q Consensus 273 ~~sli~~~ 280 (700)
+.+++...
T Consensus 364 ~~gli~~~ 371 (412)
T 1w5s_A 364 SLGLVDAK 371 (412)
T ss_dssp HTTSEEEE
T ss_pred hCCCEEee
Confidence 99999764
No 125
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.29 E-value=5.9e-12 Score=131.15 Aligned_cols=154 Identities=23% Similarity=0.239 Sum_probs=130.0
Q ss_pred cceEEEcCCCCCCCCcc-cc-ccccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEcc
Q 005367 307 EGFLVYAGSGLTEAPAD-VR-GWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMS 382 (700)
Q Consensus 307 ~~~~~~~~~~~~~~~~~-~~-~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~ 382 (700)
-..+.+.++.+..++.. +. .+++|+.|++++|.++.++ .|..+++|+.|+|++|.++.+++..|..+++|++|+|+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 35677888888887664 44 8899999999999999988 58999999999999999999999889999999999999
Q ss_pred CCcccccCCcccccccccceeccccCcccccchhh----hcCCCCCEEecccccCccccchhhhcCCCc--cceeecccc
Q 005367 383 GNETLRQLPMGISKLVSLQLLDISYTRVRELPEEL----KALVNLRCLNLDWAGELVKVPQQLLSNFSR--LRVLRMFAT 456 (700)
Q Consensus 383 ~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~----~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~--L~~L~l~~~ 456 (700)
+|......|..+..+++|++|++++|++..+|..+ ..+++|+.|++++|. +..+|...+..+++ |+.|++.+|
T Consensus 121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhhccHhhcceEEecCC
Confidence 99544444678999999999999999999998775 679999999999985 56777665778877 488999999
Q ss_pred Ccccc
Q 005367 457 GLISF 461 (700)
Q Consensus 457 ~~~~~ 461 (700)
.+..+
T Consensus 200 ~~~C~ 204 (361)
T 2xot_A 200 PLECD 204 (361)
T ss_dssp CEECC
T ss_pred CccCC
Confidence 87543
No 126
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.28 E-value=6.9e-11 Score=122.63 Aligned_cols=263 Identities=14% Similarity=0.096 Sum_probs=154.4
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc------CHHHHHHHHHHHcCCC--------------C--CCCCC
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL------QLEKIQETIRKKIGLC--------------N--DSWKN 58 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~------~~~~~~~~i~~~~~~~--------------~--~~~~~ 58 (700)
++|+|||+|+++++++. . ++|+++.... +...+...+.+.+... . .....
T Consensus 39 ~~G~GKT~Ll~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (350)
T 2qen_A 39 IRRVGKSSLLRAFLNER---P-----GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRK 110 (350)
T ss_dssp CTTSSHHHHHHHHHHHS---S-----EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGG
T ss_pred CCcCCHHHHHHHHHHHc---C-----cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeecccc
Confidence 58999999999999885 1 7888865432 5666666666655320 0 00012
Q ss_pred ccHHHHHHHHHHHhcc-CcEEEEEcCCCchhh---------hhhhcCcC--CCCcEEEEecCchhhhhc----------c
Q 005367 59 KSLEEKAQDIFKTLSK-KKFALLLDDLWERVD---------LKKIGVPL--PKNSAVVFTTRFVDVCGR----------M 116 (700)
Q Consensus 59 ~~~~~~~~~l~~~l~~-~r~LlVlDdv~~~~~---------~~~l~~~~--~~gs~iiiTTr~~~~~~~----------~ 116 (700)
....+....+.+..+. ++.+|||||++.... +..+.... .++..+|+|++....... .
T Consensus 111 ~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l 190 (350)
T 2qen_A 111 LSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPL 190 (350)
T ss_dssp CCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTT
T ss_pred chHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCcc
Confidence 3556666666665543 489999999977432 22222111 137889999886543211 1
Q ss_pred --cCcceEeccCCChHhHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCCchHHHHHHHHhccCCChHHHH-HHHHHHH
Q 005367 117 --EARRTFKVECLSDEAAWELFREKVGEETIESHHSIPELAQTVAKECGGLPLALITIGRAMAYKKTPEEWR-YAIEVLR 193 (700)
Q Consensus 117 --~~~~~~~l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~~~-~~l~~~~ 193 (700)
.....+++.+|+.+|+.+++.+.+...+.. ..++.+..+.+.++|+|+++..++..+....+...+. ...+...
T Consensus 191 ~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~---~~~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (350)
T 2qen_A 191 YGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD---VPENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAK 267 (350)
T ss_dssp TTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC---CCHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred ccCccceeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHH
Confidence 112478999999999999998765332211 2257889999999999999999987653322222221 1111111
Q ss_pred hhhhhccCcchhhccchhcccCCCCccchhHHHhhhcCCCCCceeeHHHHHHHHHHcCCCCccccccchhhHHHHHHHHH
Q 005367 194 RSASEFADLGKEVYPLLKFSYDCLPNDAIRSCFLYCCLYPEDESIDKRDLIDCWICEGFLDEAKFGTQNQGYYIVGTLVH 273 (700)
Q Consensus 194 ~~~~~~~~~~~~~~~~l~~sy~~L~~~~~~~~~l~~~~fp~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~~L~~ 273 (700)
... ...+.. +.+ . ++ ..+..+..++. +. .....+........ . .........+++.|.+
T Consensus 268 ~~~------~~~l~~---l~~-~-~~-~~~~~l~~la~--g~--~~~~~l~~~~~~~~--~---~~~~~~~~~~l~~L~~ 326 (350)
T 2qen_A 268 GLI------MGELEE---LRR-R-SP-RYVDILRAIAL--GY--NRWSLIRDYLAVKG--T---KIPEPRLYALLENLKK 326 (350)
T ss_dssp HHH------HHHHHH---HHH-H-CH-HHHHHHHHHHT--TC--CSHHHHHHHHHHTT--C---CCCHHHHHHHHHHHHH
T ss_pred HHH------HHHHHH---HHh-C-Ch-hHHHHHHHHHh--CC--CCHHHHHHHHHHHh--C---CCCHHHHHHHHHHHHh
Confidence 100 001111 111 1 45 67888888877 22 34444444322211 0 0122456778999999
Q ss_pred hhhhcccccCcEe-ehHHHHHHHH
Q 005367 274 ACLLEEVEEDQVK-MHDVIRDMAL 296 (700)
Q Consensus 274 ~sli~~~~~~~~~-~h~li~~~~~ 296 (700)
.+++...+ ..|. .|++++.+.+
T Consensus 327 ~gli~~~~-~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 327 MNWIVEED-NTYKIADPVVATVLR 349 (350)
T ss_dssp TTSEEEET-TEEEESSHHHHHHHT
T ss_pred CCCEEecC-CEEEEecHHHHHHHc
Confidence 99998653 4454 5778877653
No 127
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.27 E-value=1.3e-11 Score=135.10 Aligned_cols=156 Identities=22% Similarity=0.260 Sum_probs=130.3
Q ss_pred cceEEEcCCCCCCCCccccccccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcc
Q 005367 307 EGFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNET 386 (700)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 386 (700)
-..+.+.++.+..+| ..+++|+.|++++|.++.+|.+.. +|+.|++++|.++.++. .+++|++|+|++| .
T Consensus 82 L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N-~ 151 (571)
T 3cvr_A 82 ITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTMLPE----LPALLEYINADNN-Q 151 (571)
T ss_dssp CSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSCCCC----CCTTCCEEECCSS-C
T ss_pred CCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCCCCC----cCccccEEeCCCC-c
Confidence 467888899999998 457899999999999999988444 99999999999988665 6899999999999 5
Q ss_pred cccCCcccccccccceeccccCcccccchhhhcCCCCCEEecccccCccccchhhhcCCCcc-------ceeeccccCcc
Q 005367 387 LRQLPMGISKLVSLQLLDISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRL-------RVLRMFATGLI 459 (700)
Q Consensus 387 ~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L-------~~L~l~~~~~~ 459 (700)
++.+|. .+++|++|++++|+++.+|. +. ++|+.|++++|. +..+|. +.. +| +.|++++|.+.
T Consensus 152 l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~-L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~ 220 (571)
T 3cvr_A 152 LTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL-LESLPA--VPV--RNHHSEETEIFFRCRENRIT 220 (571)
T ss_dssp CSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC-CSSCCC--CC----------CCEEEECCSSCCC
T ss_pred cCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC-CCchhh--HHH--hhhcccccceEEecCCCcce
Confidence 777886 57899999999999999988 65 899999999985 567776 333 66 99999999884
Q ss_pred cccCcccchHHHHhcCCCcceEEEEEecchh
Q 005367 460 SFYSWHENVAEELLGLKYLEVLEITFRRFEA 490 (700)
Q Consensus 460 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 490 (700)
. +|..+..+++|+.|++++|.+.+
T Consensus 221 ~-------lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 221 H-------IPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp C-------CCGGGGGSCTTEEEECCSSSCCH
T ss_pred e-------cCHHHhcCCCCCEEEeeCCcCCC
Confidence 3 45567789999999999998864
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.26 E-value=2e-11 Score=109.48 Aligned_cols=124 Identities=24% Similarity=0.253 Sum_probs=109.5
Q ss_pred cccceEEEcCCCCC--CCCccccccccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEcc
Q 005367 305 EKEGFLVYAGSGLT--EAPADVRGWEMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMS 382 (700)
Q Consensus 305 ~~~~~~~~~~~~~~--~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~ 382 (700)
..-..+.+.++.+. .+|..+..+++++.|++++|.++.++.+..+++|++|++++|.++...+..+..+++|++|+++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 33566788888887 7888889999999999999999999889999999999999999998777777789999999999
Q ss_pred CCcccccCC--cccccccccceeccccCcccccch----hhhcCCCCCEEecc
Q 005367 383 GNETLRQLP--MGISKLVSLQLLDISYTRVRELPE----ELKALVNLRCLNLD 429 (700)
Q Consensus 383 ~~~~~~~lp--~~~~~l~~L~~L~l~~~~l~~lp~----~~~~l~~L~~L~l~ 429 (700)
+| .++.+| ..++.+++|++|++++|.++.+|. .+..+++|+.|+++
T Consensus 97 ~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 97 GN-KIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TS-CCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CC-cCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 99 566654 788999999999999999998876 68899999999986
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.24 E-value=2.7e-11 Score=113.71 Aligned_cols=128 Identities=20% Similarity=0.295 Sum_probs=95.0
Q ss_pred eeeeeccccccCCCCCCCCCceeEEEecCCCCcccccc-cccCCCcceEEEccCCcccccCCcccccccccceeccccCc
Q 005367 331 RRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGG-FFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQLLDISYTR 409 (700)
Q Consensus 331 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 409 (700)
+.++++++.++.+|.- -..+|+.|++++|.++.+++. .+..+++|++|+|++|...+..|..++.+++|++|++++|+
T Consensus 11 ~~l~~s~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRD-IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccC-CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 5677788888877741 123888888888888877764 47788888888888884333346778888888888888888
Q ss_pred ccccchh-hhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCccc
Q 005367 410 VRELPEE-LKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLIS 460 (700)
Q Consensus 410 l~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~ 460 (700)
++.++.. +..+++|++|++++|...+..|. .+..+++|+.|++++|.+..
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPG-SFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECTTCCBCC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHH-HhhcCCCCCEEEeCCCCccC
Confidence 8866544 77888888888888854433344 37788888888888887643
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.22 E-value=4.4e-11 Score=112.29 Aligned_cols=125 Identities=25% Similarity=0.345 Sum_probs=108.5
Q ss_pred ceEEEcCCCCCCCCccccccccceeeeeccccccCCCC---CCCCCceeEEEecCCCCcccccccccCCCcceEEEccCC
Q 005367 308 GFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLPT---IPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGN 384 (700)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~ 384 (700)
..+...++++..+|..+. .+++.|++++|.++.++. +..+++|++|++++|.++...+..|..+++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 456778888999988775 499999999999998874 789999999999999999998888999999999999999
Q ss_pred cccccC-CcccccccccceeccccCccccc-chhhhcCCCCCEEecccccCcc
Q 005367 385 ETLRQL-PMGISKLVSLQLLDISYTRVREL-PEELKALVNLRCLNLDWAGELV 435 (700)
Q Consensus 385 ~~~~~l-p~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~ 435 (700)
. ++.+ +..+..+++|++|++++|+++.+ |..+..+++|++|++++|....
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 89 K-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp C-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred c-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 4 5554 55588999999999999999955 6778999999999999986543
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.21 E-value=4.8e-11 Score=111.98 Aligned_cols=126 Identities=25% Similarity=0.366 Sum_probs=96.3
Q ss_pred eeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCC-cccccccccceeccccCc
Q 005367 331 RRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLP-MGISKLVSLQLLDISYTR 409 (700)
Q Consensus 331 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~ 409 (700)
+.++++++.++.+|.- -.++|+.|++++|.++.++ ..+..+++|++|+|++| .++.++ ..+..+++|++|++++|+
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc
Confidence 4567777777777732 2367888888888887666 45788888888888888 455554 568888888889998888
Q ss_pred ccccch-hhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCccc
Q 005367 410 VRELPE-ELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLIS 460 (700)
Q Consensus 410 l~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~ 460 (700)
++.++. .+..+++|+.|++++|. +..+|...+..+++|+.|++++|.+..
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCeec
Confidence 886665 47888899999998874 566776667888899999998887744
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.21 E-value=7.9e-11 Score=109.00 Aligned_cols=128 Identities=25% Similarity=0.418 Sum_probs=96.3
Q ss_pred ceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcc-cccccccceeccccC
Q 005367 330 GRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMG-ISKLVSLQLLDISYT 408 (700)
Q Consensus 330 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~ 408 (700)
.+.+++.++.++.+|. ...++|+.|++++|.++..++..+..+++|++|++++| .++.+|.. ++.+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC
Confidence 3456677777777772 23468888888888888877777788888888888888 55565543 677888888888888
Q ss_pred cccccchh-hhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCccc
Q 005367 409 RVRELPEE-LKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLIS 460 (700)
Q Consensus 409 ~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~ 460 (700)
+++.+|.. +..+++|+.|++++|. +..+|...+..+++|+.|++++|.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCeec
Confidence 88877665 5778888888888874 456776656778888888888877643
No 133
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.18 E-value=2.7e-10 Score=118.45 Aligned_cols=264 Identities=15% Similarity=0.113 Sum_probs=148.1
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCc-----cCHHHHHHHHHHHcC--------------C------CCCC
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD-----LQLEKIQETIRKKIG--------------L------CNDS 55 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~i~~~~~--------------~------~~~~ 55 (700)
++|+|||+|+++++++. .. ..+|+++... .+.......+.+.+. . +...
T Consensus 38 ~~G~GKT~L~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 111 (357)
T 2fna_A 38 LRRTGKSSIIKIGINEL---NL---PYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNE 111 (357)
T ss_dssp STTSSHHHHHHHHHHHH---TC---CEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSS
T ss_pred CCCCCHHHHHHHHHHhc---CC---CEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceE
Confidence 58999999999999886 22 2588887643 244444444443321 0 0000
Q ss_pred -------CCCccHHHHHHHHHHHhccCcEEEEEcCCCchh-----hhh-hhcCcC--CCCcEEEEecCchhhhhc-----
Q 005367 56 -------WKNKSLEEKAQDIFKTLSKKKFALLLDDLWERV-----DLK-KIGVPL--PKNSAVVFTTRFVDVCGR----- 115 (700)
Q Consensus 56 -------~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~-----~~~-~l~~~~--~~gs~iiiTTr~~~~~~~----- 115 (700)
.......+....+.+.-. ++++|||||++... ++. .+.... .++..+|+|++.......
T Consensus 112 ~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~ 190 (357)
T 2fna_A 112 IKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVE 190 (357)
T ss_dssp EEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTT
T ss_pred EEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhcc
Confidence 012344455555544322 48999999997642 221 121111 137889999987543211
Q ss_pred -----cc-C-cceEeccCCChHhHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCCchHHHHHHHHhccCCChHHHHH-
Q 005367 116 -----ME-A-RRTFKVECLSDEAAWELFREKVGEETIESHHSIPELAQTVAKECGGLPLALITIGRAMAYKKTPEEWRY- 187 (700)
Q Consensus 116 -----~~-~-~~~~~l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~~~~~- 187 (700)
.. . ...+++++|+.+|+.+++...+...+.... . . ..|.+.++|+|+++..++..+....+...|..
T Consensus 191 ~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-~---~-~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~ 265 (357)
T 2fna_A 191 DPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK-D---Y-EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQ 265 (357)
T ss_dssp CTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC-C---H-HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred CCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC-c---H-HHHHHHhCCCHHHHHHHHHHHccccchHHHHHH
Confidence 11 1 257899999999999999886543221111 1 1 88999999999999999887654333333322
Q ss_pred HHHHHHhhhhhccCcchhhccchhcccCCCCccchhHHHhhhcCCCCCceeeHHHHHHHHH-HcCCCCccccccchhhHH
Q 005367 188 AIEVLRRSASEFADLGKEVYPLLKFSYDCLPNDAIRSCFLYCCLYPEDESIDKRDLIDCWI-CEGFLDEAKFGTQNQGYY 266 (700)
Q Consensus 188 ~l~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~~~~~l~~~~fp~~~~i~~~~l~~~w~-~~g~~~~~~~~~~~~~~~ 266 (700)
..+...... ...+...+.-. ..+++ ..+..+..++. +. +...+..... ..|. .........
T Consensus 266 ~~~~~~~~~------~~~l~~~~~~~-~~l~~-~~~~~l~~la~--g~---~~~~l~~~~~~~~g~-----~~~~~~~~~ 327 (357)
T 2fna_A 266 TLEYAKKLI------LKEFENFLHGR-EIARK-RYLNIMRTLSK--CG---KWSDVKRALELEEGI-----EISDSEIYN 327 (357)
T ss_dssp HHHHHHHHH------HHHHHHHHTTC-GGGHH-HHHHHHHHHTT--CB---CHHHHHHHHHHHHCS-----CCCHHHHHH
T ss_pred HHHHHHHHH------HHHHHHHhhcc-ccccH-HHHHHHHHHHc--CC---CHHHHHHHHHHhcCC-----CCCHHHHHH
Confidence 111111000 00111111000 15666 67888888887 22 4444433211 1121 012245677
Q ss_pred HHHHHHHhhhhcccccCcEe-ehHHHHHHH
Q 005367 267 IVGTLVHACLLEEVEEDQVK-MHDVIRDMA 295 (700)
Q Consensus 267 ~~~~L~~~sli~~~~~~~~~-~h~li~~~~ 295 (700)
+++.|.+.+++...+ ..|. .|++++++.
T Consensus 328 ~L~~L~~~gli~~~~-~~y~f~~~~~~~~l 356 (357)
T 2fna_A 328 YLTQLTKHSWIIKEG-EKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHHTTSEEESS-SCEEESSHHHHHHT
T ss_pred HHHHHHhCCCEEecC-CEEEecCHHHHHhh
Confidence 899999999997654 4555 578887763
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.18 E-value=1.2e-10 Score=109.22 Aligned_cols=119 Identities=26% Similarity=0.348 Sum_probs=60.2
Q ss_pred EEEcCCCCCCCCccccccccceeeeeccccccCCC-CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccc
Q 005367 310 LVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLP-TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLR 388 (700)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 388 (700)
+...++++..+|..+. +.++.|++++|.++.+| .+..+++|+.|++++|.++.+++..|..+++|++|+|++| .++
T Consensus 15 l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~ 91 (193)
T 2wfh_A 15 VRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLR 91 (193)
T ss_dssp EECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCC
T ss_pred EEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccC
Confidence 3344445555554432 35555555555555554 3445555555555555555555544555555555555555 233
Q ss_pred cC-CcccccccccceeccccCcccccchh-hhcCCCCCEEecccc
Q 005367 389 QL-PMGISKLVSLQLLDISYTRVRELPEE-LKALVNLRCLNLDWA 431 (700)
Q Consensus 389 ~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~ 431 (700)
.+ |..+..+++|++|++++|+++.+|.. +..+++|+.|++++|
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 33 23355555555555555555544442 444555555555554
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.17 E-value=1.1e-11 Score=140.84 Aligned_cols=109 Identities=26% Similarity=0.330 Sum_probs=63.7
Q ss_pred CCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccccccccceeccccCcccccchhhhcCCCCCE
Q 005367 346 IPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQLLDISYTRVRELPEELKALVNLRC 425 (700)
Q Consensus 346 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~ 425 (700)
+..+++|+.|+|++|.+..++... ..+++|++|+|++| .++.+|..++.+++|++|+|++|+++.+|..++.+++|++
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~-~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANI-FKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGG-GGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred hccCCCCcEEECCCCCCCCCChhh-cCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence 455566666666666655554443 35666666666666 3445665566666666666666666666666666666666
Q ss_pred EecccccCccccchhhhcCCCccceeeccccCc
Q 005367 426 LNLDWAGELVKVPQQLLSNFSRLRVLRMFATGL 458 (700)
Q Consensus 426 L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~ 458 (700)
|++++|. ++.+|.. ++++++|+.|++++|.+
T Consensus 298 L~L~~N~-l~~lp~~-~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 298 FYFFDNM-VTTLPWE-FGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp EECCSSC-CCCCCSS-TTSCTTCCCEECTTSCC
T ss_pred EECCCCC-CCccChh-hhcCCCccEEeCCCCcc
Confidence 6666553 3455554 55666666666666555
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.15 E-value=2.3e-10 Score=105.81 Aligned_cols=125 Identities=25% Similarity=0.403 Sum_probs=107.4
Q ss_pred eEEEcCCCCCCCCccccccccceeeeeccccccCCCC--CCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcc
Q 005367 309 FLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLPT--IPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNET 386 (700)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 386 (700)
.+...+.++..+|..+. ++++.|++++|.++.++. +..+++|++|++++|.++.+++..+..+++|++|++++| .
T Consensus 11 ~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~ 87 (177)
T 2o6r_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-K 87 (177)
T ss_dssp EEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred EEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-C
Confidence 45667788888886654 799999999999998884 788999999999999999999888899999999999999 5
Q ss_pred cccCCc-ccccccccceeccccCcccccchh-hhcCCCCCEEecccccCccc
Q 005367 387 LRQLPM-GISKLVSLQLLDISYTRVRELPEE-LKALVNLRCLNLDWAGELVK 436 (700)
Q Consensus 387 ~~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~ 436 (700)
++.+|. .+..+++|++|++++|+++.+|.. +..+++|++|++++|.....
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 666654 478899999999999999988876 57899999999999865433
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.13 E-value=2.4e-11 Score=133.55 Aligned_cols=150 Identities=19% Similarity=0.184 Sum_probs=112.0
Q ss_pred CCccccccccceeee-eccc-------------cccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCc
Q 005367 320 APADVRGWEMGRRLS-LMKN-------------SIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNE 385 (700)
Q Consensus 320 ~~~~~~~~~~l~~l~-l~~~-------------~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 385 (700)
.|..+..+++|+.|+ ++.+ .++.++. ..|+.|++++|.++.++. +..+++|++|+|++|
T Consensus 401 ~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~----~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N- 473 (567)
T 1dce_A 401 EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEY----ADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHN- 473 (567)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHH----TTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSS-
T ss_pred CHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCc----cCceEEEecCCCCCCCcC--ccccccCcEeecCcc-
Confidence 344555566666666 3433 3333332 258899999999888654 789999999999999
Q ss_pred ccccCCcccccccccceeccccCcccccchhhhcCCCCCEEecccccCcccc--chhhhcCCCccceeeccccCcccccC
Q 005367 386 TLRQLPMGISKLVSLQLLDISYTRVRELPEELKALVNLRCLNLDWAGELVKV--PQQLLSNFSRLRVLRMFATGLISFYS 463 (700)
Q Consensus 386 ~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~--p~~~~~~l~~L~~L~l~~~~~~~~~~ 463 (700)
.++.+|..++.+++|++|++++|+++.+| .++.+++|+.|++++|.. ..+ |.. ++++++|+.|++++|.+.....
T Consensus 474 ~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l-~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 474 RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRL-QQSAAIQP-LVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCC-CSSSTTGG-GGGCTTCCEEECTTSGGGGSSS
T ss_pred cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCC-CCCCCcHH-HhcCCCCCEEEecCCcCCCCcc
Confidence 67788989999999999999999999888 888999999999998854 555 555 8899999999999988755322
Q ss_pred cccchHHHHhcCCCcceEE
Q 005367 464 WHENVAEELLGLKYLEVLE 482 (700)
Q Consensus 464 ~~~~~~~~l~~l~~L~~L~ 482 (700)
. ....+..+++|+.|+
T Consensus 551 ~---~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 551 I---QERLAEMLPSVSSIL 566 (567)
T ss_dssp C---TTHHHHHCTTCSEEE
T ss_pred H---HHHHHHHCcccCccC
Confidence 1 222344577888775
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.12 E-value=1.8e-11 Score=138.88 Aligned_cols=121 Identities=24% Similarity=0.275 Sum_probs=99.3
Q ss_pred CCCCCccccccccceeeeeccccccCCC-CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccc
Q 005367 317 LTEAPADVRGWEMGRRLSLMKNSIKNLP-TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGIS 395 (700)
Q Consensus 317 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~ 395 (700)
+...|..+..+..|+.|++++|.+..++ .+..+++|++|+|++|.++.++.. +..+++|++|+|++| .++.+|..++
T Consensus 213 ~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp~~~~ 290 (727)
T 4b8c_D 213 MVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAE-IKNLSNLRVLDLSHN-RLTSLPAELG 290 (727)
T ss_dssp ---------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGG-GGGGTTCCEEECTTS-CCSSCCSSGG
T ss_pred eecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChh-hhCCCCCCEEeCcCC-cCCccChhhc
Confidence 3344567778899999999999999888 566899999999999999866644 789999999999999 5678999999
Q ss_pred cccccceeccccCcccccchhhhcCCCCCEEecccccCccccch
Q 005367 396 KLVSLQLLDISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQ 439 (700)
Q Consensus 396 ~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~ 439 (700)
.|++|++|+|++|.++.+|..++.+++|+.|++++|...+..|.
T Consensus 291 ~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp GGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred CCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChH
Confidence 99999999999999999999999999999999999976554444
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.08 E-value=3.4e-12 Score=120.71 Aligned_cols=133 Identities=24% Similarity=0.273 Sum_probs=84.5
Q ss_pred CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccccccccceeccccCcccccchhhhcCCCCC
Q 005367 345 TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQLLDISYTRVRELPEELKALVNLR 424 (700)
Q Consensus 345 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~ 424 (700)
.+..+++|++|++++|.++.++ .+..+++|++|++++| .++.+|..+..+++|++|++++|+++.+| .+..+++|+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLR 118 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSS
T ss_pred HHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCC
Confidence 3556677777777777766654 3667777777777777 45667766666777777777777777765 566777777
Q ss_pred EEecccccCccccch-hhhcCCCccceeeccccCcccccCc----ccchHHHHhcCCCcceEE
Q 005367 425 CLNLDWAGELVKVPQ-QLLSNFSRLRVLRMFATGLISFYSW----HENVAEELLGLKYLEVLE 482 (700)
Q Consensus 425 ~L~l~~~~~~~~~p~-~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~~~l~~l~~L~~L~ 482 (700)
+|++++|. +..++. ..+..+++|+.|++++|.+...... .......+..+++|+.|+
T Consensus 119 ~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 119 VLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred EEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 77777764 343332 2366777777777777765322110 011122356677777775
No 140
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.08 E-value=2e-10 Score=126.25 Aligned_cols=121 Identities=22% Similarity=0.246 Sum_probs=104.9
Q ss_pred cceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccccccccceeccccC
Q 005367 329 MGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQLLDISYT 408 (700)
Q Consensus 329 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~ 408 (700)
.++.|++++|.++.+|.+..+++|+.|++++|.++.++. .++.+++|++|+|++| .++.+| .++.+++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccch-hhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC
Confidence 588999999999999999999999999999999996655 5889999999999999 677788 8999999999999999
Q ss_pred ccccc--chhhhcCCCCCEEecccccCccccchh---hhcCCCccceeec
Q 005367 409 RVREL--PEELKALVNLRCLNLDWAGELVKVPQQ---LLSNFSRLRVLRM 453 (700)
Q Consensus 409 ~l~~l--p~~~~~l~~L~~L~l~~~~~~~~~p~~---~~~~l~~L~~L~l 453 (700)
+++.+ |..++.+++|+.|++++|.. ...|+. .+..+++|+.|++
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l-~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSL-CQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGG-GGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcC-CCCccHHHHHHHHCcccCccCC
Confidence 99977 88999999999999999864 444432 2445888988864
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.03 E-value=4.4e-12 Score=119.93 Aligned_cols=134 Identities=25% Similarity=0.307 Sum_probs=113.7
Q ss_pred CCCCCCccccccccceeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccc
Q 005367 316 GLTEAPADVRGWEMGRRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGIS 395 (700)
Q Consensus 316 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~ 395 (700)
.+..+|..+..+++|+.|++++|.++.+|.+..+++|+.|++++|.++.++. .+..+++|++|++++| .++.+| .++
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L~~N-~l~~l~-~~~ 112 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYN-QIASLS-GIE 112 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSS-HHHHHHHCSEEEEEEE-ECCCHH-HHH
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccc-hhhcCCcCCEEECcCC-cCCcCC-ccc
Confidence 5666777888999999999999999999988899999999999999886654 4677899999999999 677776 688
Q ss_pred cccccceeccccCcccccch--hhhcCCCCCEEecccccCccccch---------hhhcCCCccceee
Q 005367 396 KLVSLQLLDISYTRVRELPE--ELKALVNLRCLNLDWAGELVKVPQ---------QLLSNFSRLRVLR 452 (700)
Q Consensus 396 ~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~p~---------~~~~~l~~L~~L~ 452 (700)
.+++|++|++++|++..++. .+..+++|++|++++|......|. ..+..+++|+.|+
T Consensus 113 ~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 89999999999999997765 688999999999999865333222 2367899999998
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.02 E-value=8.9e-10 Score=113.06 Aligned_cols=257 Identities=13% Similarity=0.047 Sum_probs=142.8
Q ss_pred cccceeeeeccccccCCC-CCCCCCceeEEEecCCCCcccccccccC--------CCcceEEEccCCcccccCC-ccccc
Q 005367 327 WEMGRRLSLMKNSIKNLP-TIPTCPHLLTLFLNRNPLTTIAGGFFQS--------MPCLTVLKMSGNETLRQLP-MGISK 396 (700)
Q Consensus 327 ~~~l~~l~l~~~~~~~l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~--------~~~L~~L~L~~~~~~~~lp-~~~~~ 396 (700)
+++|+.|++++|.+.... ....++.++.+.+..+ .++...|.+ |++|+.|+|.++ ++.++ ..|..
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~~--i~~I~~~aF~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSEK--IKNIEDAAFKG 122 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCTT--CCEECTTTTTT
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCcc--ccchhHHHhhc
Confidence 578999999999887222 1122333455555555 345566667 889999988883 55554 45788
Q ss_pred ccccceeccccCcccccchh-hhcCCCCCEEeccccc---CccccchhhhcCCCccc-eeeccccCcccccCcccchHHH
Q 005367 397 LVSLQLLDISYTRVRELPEE-LKALVNLRCLNLDWAG---ELVKVPQQLLSNFSRLR-VLRMFATGLISFYSWHENVAEE 471 (700)
Q Consensus 397 l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~---~~~~~p~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~ 471 (700)
|++|+.++++.|.+..++.. +..+.++..+...... ....+....+.++.+|+ .+.+... ...+..
T Consensus 123 ~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~---------~~l~~~ 193 (329)
T 3sb4_A 123 CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM---------GKLEDE 193 (329)
T ss_dssp CTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT---------CCHHHH
T ss_pred CcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCC---------CcHHHH
Confidence 89999999998888766544 5566666666655421 11122222244555665 3333211 112222
Q ss_pred H----hcCCCcceEEEEEecchhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEeccccccceeecc
Q 005367 472 L----LGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGLKIDY 547 (700)
Q Consensus 472 l----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~ 547 (700)
+ ....++..+.+.++-....... .. ..+++|+++++.++. +..++...
T Consensus 194 ~~~~~~~~~~~~~l~~~~~l~~~~~~~--l~-------------------------~~~~~L~~l~L~~n~-i~~I~~~a 245 (329)
T 3sb4_A 194 IMKAGLQPRDINFLTIEGKLDNADFKL--IR-------------------------DYMPNLVSLDISKTN-ATTIPDFT 245 (329)
T ss_dssp HHHTTCCGGGCSEEEEEECCCHHHHHH--HH-------------------------HHCTTCCEEECTTBC-CCEECTTT
T ss_pred HhhcccCccccceEEEeeeecHHHHHH--HH-------------------------HhcCCCeEEECCCCC-cceecHhh
Confidence 2 2356677777776432211110 00 013566666665543 33333333
Q ss_pred cccccccCCccccCCccEEeeecCcCccccc--ccccCCCCc-eEEeeeccccccccccccCCCCCCccCCCCCCCCccc
Q 005367 548 KDMVQKSRQPYVFRSLEEVTVRFCRKLKHLT--FLVFAPNLK-SISVCLCDDMEEIISAGEFDDIPEMTGIISSPFAKLQ 624 (700)
Q Consensus 548 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~-~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~ 624 (700)
+. .+++|++|++.++ ++.++ .+..+++|+ .|.+.+ .++.+.. ..+.++++|+
T Consensus 246 F~---------~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~------------~aF~~c~~L~ 300 (329)
T 3sb4_A 246 FA---------QKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF------------GAFMGCDNLR 300 (329)
T ss_dssp TT---------TCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECT------------TTTTTCTTEE
T ss_pred hh---------CCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEch------------hhhhCCccCC
Confidence 32 4666777777663 44443 356677777 777765 4554433 4566777788
Q ss_pred eeeccCcccccccccCC-CCCCCccEEE
Q 005367 625 RLRLEGLGRLKSIYWKP-LPLPRLKELE 651 (700)
Q Consensus 625 ~L~l~~c~~l~~l~~~~-~~~~~L~~L~ 651 (700)
.|++.+ ..++.++... ..+++|+.|.
T Consensus 301 ~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 301 YVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred EEEeCC-CccCccchhhhcCCcchhhhc
Confidence 777754 3666666543 2356666664
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.96 E-value=2e-09 Score=98.93 Aligned_cols=99 Identities=23% Similarity=0.376 Sum_probs=50.1
Q ss_pred eeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcc-cccccccceeccccCc
Q 005367 331 RRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMG-ISKLVSLQLLDISYTR 409 (700)
Q Consensus 331 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~ 409 (700)
+.++++++.++.+|.- -.++|+.|++++|.++.+++..|..+++|++|+|++| .++.+|.. +..+++|++|++++|+
T Consensus 15 ~~l~~~~n~l~~iP~~-~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAG-IPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCC-cCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCc
Confidence 3445555555555521 1255555555555555555554555555555555555 34444433 3445555555555555
Q ss_pred ccccchh-hhcCCCCCEEecccc
Q 005367 410 VRELPEE-LKALVNLRCLNLDWA 431 (700)
Q Consensus 410 l~~lp~~-~~~l~~L~~L~l~~~ 431 (700)
+..+|.. +..+++|++|++++|
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSS
T ss_pred cceeCHHHhccccCCCEEEeCCC
Confidence 5544443 444555555555544
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.95 E-value=2.6e-09 Score=98.17 Aligned_cols=108 Identities=26% Similarity=0.358 Sum_probs=94.7
Q ss_pred ceEEEcCCCCCCCCccccccccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCc
Q 005367 308 GFLVYAGSGLTEAPADVRGWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNE 385 (700)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 385 (700)
..+...++.+..+|..+. ++++.|++++|.++.++ .+..+++|++|+|++|.++.+++..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N- 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN- 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-
Confidence 456778888999998775 89999999999999986 5889999999999999999999988899999999999999
Q ss_pred ccccCCcc-cccccccceeccccCcccccchhhh
Q 005367 386 TLRQLPMG-ISKLVSLQLLDISYTRVRELPEELK 418 (700)
Q Consensus 386 ~~~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~~~ 418 (700)
.++.+|.. +..+++|++|++++|.+...+..+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~ 125 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIM 125 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGH
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccccHH
Confidence 67777765 8899999999999999986665443
No 145
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.93 E-value=2.9e-08 Score=104.19 Aligned_cols=259 Identities=15% Similarity=-0.004 Sum_probs=155.2
Q ss_pred CCCCcHHHHHHHHHhhcccC----CCC-CCEEEEEEeCCcc-CHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhcc
Q 005367 1 MGGVGKTTLLTQINNKFVDN----PTD-FDYVIWVVVSKDL-QLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSK 74 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~----~~~-f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 74 (700)
++|+|||++|+++++..... .+. ...++|+++.... +...++..+++.+.............+....+...+..
T Consensus 53 ~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 132 (384)
T 2qby_B 53 LTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN 132 (384)
T ss_dssp CTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc
Confidence 58999999999999875211 111 4567888887776 88888888888873221111334456677778888877
Q ss_pred CcEEEEEcCCCchhh-------hhhhcCcCCCCcEEEEecCchhhhhcc------cCcceEeccCCChHhHHHHHHHHhc
Q 005367 75 KKFALLLDDLWERVD-------LKKIGVPLPKNSAVVFTTRFVDVCGRM------EARRTFKVECLSDEAAWELFREKVG 141 (700)
Q Consensus 75 ~r~LlVlDdv~~~~~-------~~~l~~~~~~gs~iiiTTr~~~~~~~~------~~~~~~~l~~L~~~~a~~l~~~~~~ 141 (700)
++.+|||||++.... +..+.... .+..+|+||+.......+ .-...+++++++.++..+++...+.
T Consensus 133 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 133 IRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp SCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred CCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 777999999976532 33333333 578889999875321111 1123899999999999999998864
Q ss_pred ccccCCCCChHHHHHHHHHHhC---CCch-HHHHHHHH--hcc---CCChHHHHHHHHHHHhhhhhccCcchhhccchhc
Q 005367 142 EETIESHHSIPELAQTVAKECG---GLPL-ALITIGRA--MAY---KKTPEEWRYAIEVLRRSASEFADLGKEVYPLLKF 212 (700)
Q Consensus 142 ~~~~~~~~~~~~~~~~i~~~~~---g~Pl-ai~~~~~~--l~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 212 (700)
..- ....-.++....+++.++ |.|. |+..+-.. ++. .-+.+.+...++.... ..+..
T Consensus 212 ~~~-~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~~-------------~~~~~ 277 (384)
T 2qby_B 212 YGL-IKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYEQ-------------ERLIE 277 (384)
T ss_dssp HTS-CTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHHH-------------HHHHH
T ss_pred hhc-ccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhc-------------chHHH
Confidence 210 111223567788888887 8776 44443322 221 1366677666655432 12344
Q ss_pred ccCCCCccchhHHHhhhcCCCCCceeeHHHHHHHHHHcCCCCccccccchhhHHHHHHHHHhhhhccc
Q 005367 213 SYDCLPNDAIRSCFLYCCLYPEDESIDKRDLIDCWICEGFLDEAKFGTQNQGYYIVGTLVHACLLEEV 280 (700)
Q Consensus 213 sy~~L~~~~~~~~~l~~~~fp~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~~L~~~sli~~~ 280 (700)
++..|++ ..+..+..++....+.++. +.+...-...| . ..........++..|...+++...
T Consensus 278 ~~~~l~~-~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~---~~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 278 AVKALPF-HYKLALRSLIESEDVMSAH-KMYTDLCNKFK-Q---KPLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHSSCH-HHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-C---CCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHcCCH-HHHHHHHHHHHhcccChHH-HHHHHHHHHcC-C---CCCCHHHHHHHHHHHHhCCCEEEE
Confidence 5667776 5555555555511101111 11111111122 1 122335677889999999999764
No 146
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.93 E-value=2.5e-08 Score=104.77 Aligned_cols=262 Identities=15% Similarity=0.096 Sum_probs=153.8
Q ss_pred CCCCcHHHHHHHHHhhcccCC---CCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhc--cC
Q 005367 1 MGGVGKTTLLTQINNKFVDNP---TDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLS--KK 75 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~ 75 (700)
++|+|||++|+++++...... +.-..++|+++....+...+...++++++..... ...+..+....+...+. ++
T Consensus 52 ~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~ 130 (387)
T 2v1u_A 52 LTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPF-TGLSVGEVYERLVKRLSRLRG 130 (387)
T ss_dssp CTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCS-SCCCHHHHHHHHHHHHTTSCS
T ss_pred CCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHhccCC
Confidence 589999999999998762110 1134578889888888999999999999754321 23345666677777764 45
Q ss_pred cEEEEEcCCCchhh-------hhhhcCcC-----CCCcEEEEecCchhhhhccc-------CcceEeccCCChHhHHHHH
Q 005367 76 KFALLLDDLWERVD-------LKKIGVPL-----PKNSAVVFTTRFVDVCGRME-------ARRTFKVECLSDEAAWELF 136 (700)
Q Consensus 76 r~LlVlDdv~~~~~-------~~~l~~~~-----~~gs~iiiTTr~~~~~~~~~-------~~~~~~l~~L~~~~a~~l~ 136 (700)
+.+||||+++.... +..+.... +.+..+|.||+.......+. ....+.+++++.++..+++
T Consensus 131 ~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il 210 (387)
T 2v1u_A 131 IYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDIL 210 (387)
T ss_dssp EEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHH
T ss_pred eEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHH
Confidence 88999999986531 22222212 33667888887653321111 1147899999999999999
Q ss_pred HHHhcccccCCCCChHHHHHHHHHHhC---CCch-HHHHHHHHh--c---c-C-CChHHHHHHHHHHHhhhhhccCcchh
Q 005367 137 REKVGEETIESHHSIPELAQTVAKECG---GLPL-ALITIGRAM--A---Y-K-KTPEEWRYAIEVLRRSASEFADLGKE 205 (700)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Pl-ai~~~~~~l--~---~-~-~~~~~~~~~l~~~~~~~~~~~~~~~~ 205 (700)
...+.... ....-.++....+++.++ |.|. ++..+.... + + . -+.+.+...++.....
T Consensus 211 ~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~---------- 279 (387)
T 2v1u_A 211 ETRAEEAF-NPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIERD---------- 279 (387)
T ss_dssp HHHHHHHB-CTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHH----------
T ss_pred HHHHHhhc-cCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhhc----------
Confidence 98864211 111122456777888887 9983 333332221 1 1 1 2566666655544321
Q ss_pred hccchhcccCCCCccchhHHHhhhc-CCCCCceeeHHHHHHHHHH--cCCCCccccccchhhHHHHHHHHHhhhhccc
Q 005367 206 VYPLLKFSYDCLPNDAIRSCFLYCC-LYPEDESIDKRDLIDCWIC--EGFLDEAKFGTQNQGYYIVGTLVHACLLEEV 280 (700)
Q Consensus 206 ~~~~l~~sy~~L~~~~~~~~~l~~~-~fp~~~~i~~~~l~~~w~~--~g~~~~~~~~~~~~~~~~~~~L~~~sli~~~ 280 (700)
.+.-++..+++ ..+..+..++ .+.+...+....+.+.... +.. . ........+..+++.|...+++...
T Consensus 280 ---~~~~~~~~l~~-~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 280 ---RVSEVVRTLPL-HAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTL-G-LEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp ---HHHHHHHSSCH-HHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHT-T-CCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ---hHHHHHHcCCH-HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhc-C-CCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 13335667777 4555544444 3433334555544443211 110 0 1122335677889999999998763
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.92 E-value=3.9e-09 Score=96.66 Aligned_cols=99 Identities=25% Similarity=0.379 Sum_probs=52.5
Q ss_pred eeeeeccccccCCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcc-cccccccceeccccCc
Q 005367 331 RRLSLMKNSIKNLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMG-ISKLVSLQLLDISYTR 409 (700)
Q Consensus 331 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~ 409 (700)
+.++++++.++.+|.-. .++|+.|++++|.++.+++..|..+++|++|+|++| .++.+|.. +..+++|++|++++|+
T Consensus 12 ~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCCc
Confidence 44555566665555211 255566666666655555555555555666666555 34444332 3455555555555555
Q ss_pred ccccchh-hhcCCCCCEEecccc
Q 005367 410 VRELPEE-LKALVNLRCLNLDWA 431 (700)
Q Consensus 410 l~~lp~~-~~~l~~L~~L~l~~~ 431 (700)
++.+|.. +..+++|+.|++++|
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCEeCHHHhcCCCCCCEEEeCCC
Confidence 5544443 445555555555554
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.92 E-value=4.2e-08 Score=102.84 Aligned_cols=120 Identities=20% Similarity=0.252 Sum_probs=87.7
Q ss_pred ccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCC-cccccccccceec
Q 005367 328 EMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLP-MGISKLVSLQLLD 404 (700)
Q Consensus 328 ~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~ 404 (700)
..++.+.+. +.++.++ .|.++ +|+.+.+..+ ++.+....|.++ +|+.+.+..+ +..++ ..|..|++|+.++
T Consensus 113 ~~l~~i~ip-~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILP-NSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPST--LEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECC-TTCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCTT--CCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEEC-CccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCCC--ccEehHHHhhCcccCCeee
Confidence 344445444 3455555 56665 6888888766 777777778775 6888888863 55543 4678889999999
Q ss_pred cccCcccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccc
Q 005367 405 ISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFA 455 (700)
Q Consensus 405 l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~ 455 (700)
+..|++..++.....+.+|+.+.+..+ +..++...+.++++|+.+.+..
T Consensus 187 l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 187 LSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCT
T ss_pred cCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCC
Confidence 998888888877656789999988743 5677776688888888888864
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.91 E-value=4.3e-09 Score=96.39 Aligned_cols=105 Identities=21% Similarity=0.297 Sum_probs=82.3
Q ss_pred ceeEEEecCCCCcccccccccCCCcceEEEccCCcccccC-CcccccccccceeccccCcccccchh-hhcCCCCCEEec
Q 005367 351 HLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQL-PMGISKLVSLQLLDISYTRVRELPEE-LKALVNLRCLNL 428 (700)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l 428 (700)
..+.++++++.++.++... .++|++|+|++| .++.+ |..+..+++|++|++++|+++.+|.. +..+++|++|++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI---PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcCccCccC---CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 4578888888888877653 377888999998 45555 66688888999999999988877765 578889999999
Q ss_pred ccccCccccchhhhcCCCccceeeccccCccc
Q 005367 429 DWAGELVKVPQQLLSNFSRLRVLRMFATGLIS 460 (700)
Q Consensus 429 ~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~ 460 (700)
++|. +..++...+.++++|+.|++++|.+..
T Consensus 86 ~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 86 NDNQ-LKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCCc-cCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 8884 566776557888899999998887744
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.90 E-value=3.7e-08 Score=103.26 Aligned_cols=149 Identities=10% Similarity=0.145 Sum_probs=108.7
Q ss_pred cccccccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCccccccccc
Q 005367 323 DVRGWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSL 400 (700)
Q Consensus 323 ~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L 400 (700)
.+.+ .+|+.+.+..+ ++.++ .|.++ +|+.+.+.. .++.+....|.+|++|+.+++.+| .++.++...-.+.+|
T Consensus 131 aF~~-~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L 205 (401)
T 4fdw_A 131 AFRN-SQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGI 205 (401)
T ss_dssp TTTT-CCCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCC
T ss_pred hccc-CCccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEeeccc
Confidence 3445 36888888755 77666 56665 699999986 688888888999999999999998 677777665457899
Q ss_pred ceeccccCcccccch-hhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcc
Q 005367 401 QLLDISYTRVRELPE-ELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLE 479 (700)
Q Consensus 401 ~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~ 479 (700)
+.+.+..+ +..++. .+..+++|+.+.+..+ +..++...+.+ .+|+.+.+..+ +... ....+.+|++|+
T Consensus 206 ~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~-i~~I------~~~aF~~c~~L~ 274 (401)
T 4fdw_A 206 EEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG-VTNI------ASRAFYYCPELA 274 (401)
T ss_dssp SEEECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT-CCEE------CTTTTTTCTTCC
T ss_pred CEEEeCCc-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC-ccEE------ChhHhhCCCCCC
Confidence 99999854 666654 4778999999999864 56677665766 78888888432 2111 122356778888
Q ss_pred eEEEEEec
Q 005367 480 VLEITFRR 487 (700)
Q Consensus 480 ~L~l~~~~ 487 (700)
.+.+..+.
T Consensus 275 ~l~l~~~~ 282 (401)
T 4fdw_A 275 EVTTYGST 282 (401)
T ss_dssp EEEEESSC
T ss_pred EEEeCCcc
Confidence 88776543
No 151
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.85 E-value=1.2e-07 Score=99.49 Aligned_cols=257 Identities=14% Similarity=0.086 Sum_probs=155.6
Q ss_pred CCCCcHHHHHHHHHhhcccCCCC-CCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhc--cCcE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTD-FDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLS--KKKF 77 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~r~ 77 (700)
++|+|||++|++++... ... -..++|+++....+...+...++..++..... ......+....+...+. +++.
T Consensus 52 ~~G~GKTtl~~~l~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~ 127 (389)
T 1fnn_A 52 RPGTGKTVTLRKLWELY---KDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPR-RGLSRDEFLALLVEHLRERDLYM 127 (389)
T ss_dssp CTTSSHHHHHHHHHHHH---TTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCS-SCCCHHHHHHHHHHHHHHTTCCE
T ss_pred CCCCCHHHHHHHHHHHH---hhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCC-CCCCHHHHHHHHHHHHhhcCCeE
Confidence 47999999999999987 332 24678888888888889999999988654321 23345566666666554 4678
Q ss_pred EEEEcCCCch--hhhhhhcCcC---C----CCcEEEEecCchhhhhccc-------CcceEeccCCChHhHHHHHHHHhc
Q 005367 78 ALLLDDLWER--VDLKKIGVPL---P----KNSAVVFTTRFVDVCGRME-------ARRTFKVECLSDEAAWELFREKVG 141 (700)
Q Consensus 78 LlVlDdv~~~--~~~~~l~~~~---~----~gs~iiiTTr~~~~~~~~~-------~~~~~~l~~L~~~~a~~l~~~~~~ 141 (700)
+||||+++.. ..+..+...+ + .+..||++|+.......+. ....+.+++++.++..+++...+.
T Consensus 128 vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~ 207 (389)
T 1fnn_A 128 FLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAK 207 (389)
T ss_dssp EEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHH
T ss_pred EEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 9999999765 2333332222 2 3667888887664433221 123699999999999999988874
Q ss_pred ccccCCCCChHHHHHHHHHHh---------CCCchHHHHHHHHh---c---cC--CChHHHHHHHHHHHhhhhhccCcch
Q 005367 142 EETIESHHSIPELAQTVAKEC---------GGLPLALITIGRAM---A---YK--KTPEEWRYAIEVLRRSASEFADLGK 204 (700)
Q Consensus 142 ~~~~~~~~~~~~~~~~i~~~~---------~g~Plai~~~~~~l---~---~~--~~~~~~~~~l~~~~~~~~~~~~~~~ 204 (700)
... ....-.++....+++.+ +|.|..+..+.... + +. -+.+..........
T Consensus 208 ~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~----------- 275 (389)
T 1fnn_A 208 AGL-AEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL----------- 275 (389)
T ss_dssp HHB-CTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS-----------
T ss_pred hhc-CCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh-----------
Confidence 311 11123468888999999 78775443332221 1 11 12333333222211
Q ss_pred hhccchhcccCCCCccchhHHHhhhcCCC---CCceeeHHHHHHHHHH----cCCCCccccccchhhHHHHHHHHHhhhh
Q 005367 205 EVYPLLKFSYDCLPNDAIRSCFLYCCLYP---EDESIDKRDLIDCWIC----EGFLDEAKFGTQNQGYYIVGTLVHACLL 277 (700)
Q Consensus 205 ~~~~~l~~sy~~L~~~~~~~~~l~~~~fp---~~~~i~~~~l~~~w~~----~g~~~~~~~~~~~~~~~~~~~L~~~sli 277 (700)
...+.-.+..|++ +.+.++..++.+. .+..+....+...+.. .|.. .-.......+++.|...+++
T Consensus 276 --~~~~~~~l~~l~~-~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~l~~L~~~gli 348 (389)
T 1fnn_A 276 --FGISEEVLIGLPL-HEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGER----PRVHSQLWSYLNDLREKGIV 348 (389)
T ss_dssp --CCCCHHHHHHSCH-HHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCC----CCCHHHHHHHHHHHHHTTSS
T ss_pred --hhhHHHHHHcCCH-HHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCC----CCCHHHHHHHHHHHHhCCCe
Confidence 1223334556776 5666666565443 2214565665554432 1211 11235677889999999999
Q ss_pred ccc
Q 005367 278 EEV 280 (700)
Q Consensus 278 ~~~ 280 (700)
...
T Consensus 349 ~~~ 351 (389)
T 1fnn_A 349 ETR 351 (389)
T ss_dssp EEE
T ss_pred EEe
Confidence 764
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.80 E-value=6.4e-09 Score=106.61 Aligned_cols=56 Identities=11% Similarity=0.170 Sum_probs=46.2
Q ss_pred cccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccC
Q 005367 327 WEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSG 383 (700)
Q Consensus 327 ~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 383 (700)
+++|+.+.+.. .++.++ .|..|++|+.+++..|.+..+.+..|..+.++..+.+..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 78899999988 888777 588899999999999988888888888888888777665
No 153
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.66 E-value=8.3e-08 Score=100.68 Aligned_cols=259 Identities=14% Similarity=0.081 Sum_probs=147.8
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhc--cCcEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLS--KKKFA 78 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~r~L 78 (700)
++|+|||+||++++.........-..++|+++....+...+...++..++..... ...+..+....+...+. +++.+
T Consensus 53 ~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~v 131 (386)
T 2qby_A 53 LTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPF-TGLSIAELYRRLVKAVRDYGSQVV 131 (386)
T ss_dssp CTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCS-SSCCHHHHHHHHHHHHHTCCSCEE
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEE
Confidence 5899999999999987621111034678888777777888888888888654321 23345566666666664 35899
Q ss_pred EEEcCCCchh------hhhhhcCcC---CC-CcEEEEecCchhhhhcccC-------cceEeccCCChHhHHHHHHHHhc
Q 005367 79 LLLDDLWERV------DLKKIGVPL---PK-NSAVVFTTRFVDVCGRMEA-------RRTFKVECLSDEAAWELFREKVG 141 (700)
Q Consensus 79 lVlDdv~~~~------~~~~l~~~~---~~-gs~iiiTTr~~~~~~~~~~-------~~~~~l~~L~~~~a~~l~~~~~~ 141 (700)
||||+++... .+..+...+ .. +..+|+||+.......+.. ...+.+++++.++..+++...+.
T Consensus 132 lilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~ 211 (386)
T 2qby_A 132 IVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQ 211 (386)
T ss_dssp EEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHH
T ss_pred EEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHH
Confidence 9999997642 233332222 22 5667888876654332211 24799999999999999998763
Q ss_pred ccccCCCCChHHHHHHHHHHhC---CCch-HHHHHHHHh--c---c--CCChHHHHHHHHHHHhhhhhccCcchhhccch
Q 005367 142 EETIESHHSIPELAQTVAKECG---GLPL-ALITIGRAM--A---Y--KKTPEEWRYAIEVLRRSASEFADLGKEVYPLL 210 (700)
Q Consensus 142 ~~~~~~~~~~~~~~~~i~~~~~---g~Pl-ai~~~~~~l--~---~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 210 (700)
... ....-..+....+++.++ |.|. ++..+.... + + .-+.+.....++..... .+
T Consensus 212 ~~~-~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~-------------~~ 277 (386)
T 2qby_A 212 MAF-KPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIERD-------------RV 277 (386)
T ss_dssp HHB-CSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHH-------------HH
T ss_pred hhc-cCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhhc-------------hH
Confidence 211 112233677778888887 9887 333332221 1 1 12555555555443321 22
Q ss_pred hcccCCCCccchhHHHhhhcCCC--CCceeeHHHHHHHHH----HcCCCCccccccchhhHHHHHHHHHhhhhcc
Q 005367 211 KFSYDCLPNDAIRSCFLYCCLYP--EDESIDKRDLIDCWI----CEGFLDEAKFGTQNQGYYIVGTLVHACLLEE 279 (700)
Q Consensus 211 ~~sy~~L~~~~~~~~~l~~~~fp--~~~~i~~~~l~~~w~----~~g~~~~~~~~~~~~~~~~~~~L~~~sli~~ 279 (700)
.-.+..+++ ..+..+..++.+. +...+....+.+... ..| +. .-.......+++.|...+++..
T Consensus 278 ~~~~~~l~~-~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g-~~---~~~~~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 278 RDIILTLPF-HSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG-VE---AVTQRRVSDIINELDMVGILTA 347 (386)
T ss_dssp HHHHHTSCH-HHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT-CC---CCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHcCCH-HHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC-CC---CCCHHHHHHHHHHHHhCCCEEE
Confidence 334556666 4555444444221 112234433322211 111 10 1122456677889999998865
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.64 E-value=5.9e-08 Score=100.22 Aligned_cols=97 Identities=18% Similarity=0.242 Sum_probs=51.9
Q ss_pred eeccc-cccCCCCCCCCCceeEEEecC-CCCcccccccccCCCcceEEEccCCcccccC-CcccccccccceeccccCcc
Q 005367 334 SLMKN-SIKNLPTIPTCPHLLTLFLNR-NPLTTIAGGFFQSMPCLTVLKMSGNETLRQL-PMGISKLVSLQLLDISYTRV 410 (700)
Q Consensus 334 ~l~~~-~~~~l~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~l~~~~l 410 (700)
+.+++ .++.+|.+..+.+|+.|+|++ |.++.+++..|..+++|++|+|++|. ++.+ |..|+.+++|++|+|++|++
T Consensus 14 ~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 14 RCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp ECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCCcc
Confidence 44444 455555555555566666654 55555555555556666666666652 3333 33455556666666666655
Q ss_pred cccchhhhcCCCCCEEecccc
Q 005367 411 RELPEELKALVNLRCLNLDWA 431 (700)
Q Consensus 411 ~~lp~~~~~l~~L~~L~l~~~ 431 (700)
..+|..+.....|+.|++.+|
T Consensus 93 ~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 93 ESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp SCCCSTTTCSCCCCEEECCSS
T ss_pred ceeCHHHcccCCceEEEeeCC
Confidence 555544333223555555555
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.60 E-value=3e-07 Score=96.69 Aligned_cols=280 Identities=14% Similarity=0.119 Sum_probs=129.4
Q ss_pred cccccccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccC----------
Q 005367 323 DVRGWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQL---------- 390 (700)
Q Consensus 323 ~~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~l---------- 390 (700)
.+.++++|+.+.+. +.++.+. .|.+|.+|+.+++..+ ++.+....|.+|..|+.+.+..+ +..+
T Consensus 66 AF~~c~~L~~i~lp-~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 66 AFQGCRKVTEIKIP-STVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM--LKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTTCTTEEEEECC-TTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTTTCCC
T ss_pred HhhCCCCceEEEeC-CCccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc--eeeecceeeecccc
Confidence 45556667777665 3355554 4666777777777544 55555555666666665554432 1111
Q ss_pred -------------CcccccccccceeccccCcccccch-hhhcCCCCCEEecccccCccccchhhhcCCCccceeecccc
Q 005367 391 -------------PMGISKLVSLQLLDISYTRVRELPE-ELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFAT 456 (700)
Q Consensus 391 -------------p~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~ 456 (700)
...|..+++|+.+.+..+ +..++. .+..+.+|+.+.+..+ +..++...+.++..|+.+.+..+
T Consensus 142 ~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 142 KEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS 218 (394)
T ss_dssp SEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT
T ss_pred cccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC
Confidence 112334444554444432 122221 2344455555544432 23333333444555555444322
Q ss_pred CcccccCcccchHHHHhcCCCcceEEEEEecchhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEec
Q 005367 457 GLISFYSWHENVAEELLGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYS 536 (700)
Q Consensus 457 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 536 (700)
.... ......+.+|+.+.+... ...+.. .....+..++.+.+... .....-..+..+..++.+....
T Consensus 219 ~~~i--------~~~~~~~~~l~~i~ip~~-~~~i~~--~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~ 285 (394)
T 4fs7_A 219 LYYL--------GDFALSKTGVKNIIIPDS-FTELGK--SVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVIYGS 285 (394)
T ss_dssp CCEE--------CTTTTTTCCCCEEEECTT-CCEECS--STTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEEECS
T ss_pred ceEe--------ehhhcccCCCceEEECCC-ceeccc--ccccccccceeEEcCCC--cceeeccccccccccceeccCc
Confidence 1100 011123345555554321 111100 00011223343333322 2222223455566666665533
Q ss_pred cccccceeecccccccccCCccccCCccEEeeecCcCccccc--ccccCCCCceEEeeeccccccccccccCCCCCCccC
Q 005367 537 CDWIKGLKIDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLT--FLVFAPNLKSISVCLCDDMEEIISAGEFDDIPEMTG 614 (700)
Q Consensus 537 ~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 614 (700)
.. ++... ...+.+|+++.+.+. ++.++ .+..+.+|+.+.|.. .++.+..
T Consensus 286 ~~----i~~~~---------F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~------------ 336 (394)
T 4fs7_A 286 VI----VPEKT---------FYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY--LVEEIGK------------ 336 (394)
T ss_dssp SE----ECTTT---------TTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCT--TCCEECT------------
T ss_pred ee----ecccc---------ccccccccccccccc--cceechhhhcCCCCCCEEEeCC--cccEEhH------------
Confidence 21 11111 124677777777653 33332 355677777777753 2444432
Q ss_pred CCCCCCCccceeeccCcccccccccCCC-CCCCccEEEEc
Q 005367 615 IISSPFAKLQRLRLEGLGRLKSIYWKPL-PLPRLKELEVR 653 (700)
Q Consensus 615 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~i~ 653 (700)
..+.++++|+.+.+.. +++.++.... .+++|+++++.
T Consensus 337 ~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 337 RSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEE
T ss_pred HhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEEC
Confidence 3556677777777753 3555544322 35667776663
No 156
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.59 E-value=3.1e-09 Score=110.35 Aligned_cols=160 Identities=17% Similarity=0.099 Sum_probs=95.9
Q ss_pred ccceeeeeccccccCCC------CC-CCCCceeEEEecCCCCccccc-ccccCCCcceEEEccCCcccccC-Cccc----
Q 005367 328 EMGRRLSLMKNSIKNLP------TI-PTCPHLLTLFLNRNPLTTIAG-GFFQSMPCLTVLKMSGNETLRQL-PMGI---- 394 (700)
Q Consensus 328 ~~l~~l~l~~~~~~~l~------~~-~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~l-p~~~---- 394 (700)
+.++.|++++|.+.... .+ ..+++|+.|+|++|.++.... .....+++|+.|+|++| .++.. ...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHH
Confidence 45677777777765422 11 234678888888887654332 22334567888888888 33321 1122
Q ss_pred -ccccccceeccccCccc-----ccchhhhcCCCCCEEecccccCccc----cchhhhcCCCccceeeccccCcccccCc
Q 005367 395 -SKLVSLQLLDISYTRVR-----ELPEELKALVNLRCLNLDWAGELVK----VPQQLLSNFSRLRVLRMFATGLISFYSW 464 (700)
Q Consensus 395 -~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~----~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 464 (700)
...++|++|++++|.++ .++..+..+++|++|++++|..... ++.. +..+++|+.|++++|.+... .
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~-L~~~~~L~~L~Ls~N~i~~~--g 227 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ-LDRNRQLQELNVAYNGAGDT--A 227 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH-GGGCSCCCEEECCSSCCCHH--H
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH-HhcCCCcCeEECCCCCCCHH--H
Confidence 23567888888888775 2444556777888888887753221 1222 55667788888887776331 1
Q ss_pred ccchHHHHhcCCCcceEEEEEecchhh
Q 005367 465 HENVAEELLGLKYLEVLEITFRRFEAY 491 (700)
Q Consensus 465 ~~~~~~~l~~l~~L~~L~l~~~~~~~~ 491 (700)
.......+..+++|++|++++|.+...
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 122344455677788888887776543
No 157
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.58 E-value=5.3e-07 Score=87.75 Aligned_cols=100 Identities=14% Similarity=0.145 Sum_probs=69.6
Q ss_pred cCcEEEEEcCCCch--hhhhhhcCc---CCCCcEEEEecCchhhh-hcc-cCcceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWER--VDLKKIGVP---LPKNSAVVFTTRFVDVC-GRM-EARRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~--~~~~~l~~~---~~~gs~iiiTTr~~~~~-~~~-~~~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
+++.+||+||++.. ..++.+... .+.+..+|+||+..... ..+ .....+++++++.++..+++...+...+..
T Consensus 125 ~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~ 204 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 204 (250)
T ss_dssp SSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC
T ss_pred CCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC
Confidence 46799999999764 334444322 34478888888764432 111 223579999999999999999887543322
Q ss_pred CCCChHHHHHHHHHHhCCCchHHHHHHHHh
Q 005367 147 SHHSIPELAQTVAKECGGLPLALITIGRAM 176 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 176 (700)
-.++....+++.++|.|..+..+...+
T Consensus 205 ---~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 205 ---HEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp ---BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 236778899999999999888776544
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.57 E-value=5.4e-07 Score=94.68 Aligned_cols=267 Identities=9% Similarity=0.093 Sum_probs=147.1
Q ss_pred cccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCC-cccccccccceeccccCcccccc-
Q 005367 339 SIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLP-MGISKLVSLQLLDISYTRVRELP- 414 (700)
Q Consensus 339 ~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp- 414 (700)
.++.+. .|.+|.+|+.+.+.. .++.+....|.+|.+|+.+++.++ ++.++ ..+..+..|+.+.+..+ +..+.
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~ 133 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIGV 133 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred eEeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeecc
Confidence 455565 688999999999975 488888888999999999999765 44443 34677888887766543 11111
Q ss_pred ----------------------hhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccccCcccccCcccchHHHH
Q 005367 415 ----------------------EELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEEL 472 (700)
Q Consensus 415 ----------------------~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l 472 (700)
..+..+.+|+.+.+..+ ...++...+.++.+|+.+.+..+- ... ....+
T Consensus 134 ~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~~-~~I------~~~~F 204 (394)
T 4fs7_A 134 EAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRNL-KII------RDYCF 204 (394)
T ss_dssp TTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTTC-CEE------CTTTT
T ss_pred eeeecccccccccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCCc-eEe------Cchhh
Confidence 12445556666665432 234444445566666666554321 000 01123
Q ss_pred hcCCCcceEEEEEecchhhHhhhhcccccccchhhhccccCCCceeeecCcCccccccEEEEeccccccceeeccccccc
Q 005367 473 LGLKYLEVLEITFRRFEAYQTFLSSQKLRSCTQALFLHEFDREESIDVAGLADLEQLNTLIFYSCDWIKGLKIDYKDMVQ 552 (700)
Q Consensus 473 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 552 (700)
.++..|+.+.+..+.... .. .......|+.+.+... .....-..+..+.+|+.+.+.... ..+.....
T Consensus 205 ~~~~~L~~i~~~~~~~~i-~~---~~~~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~--~~i~~~~F---- 272 (394)
T 4fs7_A 205 AECILLENMEFPNSLYYL-GD---FALSKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNNK--LRIGGSLF---- 272 (394)
T ss_dssp TTCTTCCBCCCCTTCCEE-CT---TTTTTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCTT--CEECSCTT----
T ss_pred ccccccceeecCCCceEe-eh---hhcccCCCceEEECCC--ceecccccccccccceeEEcCCCc--ceeecccc----
Confidence 445555554433221110 00 0011123444443321 222232345556677776664332 11111111
Q ss_pred ccCCccccCCccEEeeecCcCcccccccccCCCCceEEeeeccccccccccccCCCCCCccCCCCCCCCccceeeccCcc
Q 005367 553 KSRQPYVFRSLEEVTVRFCRKLKHLTFLVFAPNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPFAKLQRLRLEGLG 632 (700)
Q Consensus 553 ~~~~~~~~~~L~~L~l~~~~~l~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 632 (700)
..+..++.+...... +. -..+..+.+|+.+.+.. .++.+.. ..+.++++|+.++|.+
T Consensus 273 -----~~~~~l~~~~~~~~~-i~-~~~F~~~~~L~~i~l~~--~i~~I~~------------~aF~~c~~L~~i~lp~-- 329 (394)
T 4fs7_A 273 -----YNCSGLKKVIYGSVI-VP-EKTFYGCSSLTEVKLLD--SVKFIGE------------EAFESCTSLVSIDLPY-- 329 (394)
T ss_dssp -----TTCTTCCEEEECSSE-EC-TTTTTTCTTCCEEEECT--TCCEECT------------TTTTTCTTCCEECCCT--
T ss_pred -----ccccccceeccCcee-ec-ccccccccccccccccc--ccceech------------hhhcCCCCCCEEEeCC--
Confidence 246667776665431 11 11356788999998864 3555433 4677889999999864
Q ss_pred cccccccCCC-CCCCccEEEEc
Q 005367 633 RLKSIYWKPL-PLPRLKELEVR 653 (700)
Q Consensus 633 ~l~~l~~~~~-~~~~L~~L~i~ 653 (700)
.++.++...+ .+.+|+.+.+.
T Consensus 330 ~v~~I~~~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 330 LVEEIGKRSFRGCTSLSNINFP 351 (394)
T ss_dssp TCCEECTTTTTTCTTCCEECCC
T ss_pred cccEEhHHhccCCCCCCEEEEC
Confidence 4666654433 46778887774
No 159
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.53 E-value=1.3e-08 Score=105.61 Aligned_cols=140 Identities=14% Similarity=0.081 Sum_probs=95.1
Q ss_pred CCceeEEEecCCCCccccccccc-----CCCcceEEEccCCcccccCCcc-cccccccceeccccCccccc-----chhh
Q 005367 349 CPHLLTLFLNRNPLTTIAGGFFQ-----SMPCLTVLKMSGNETLRQLPMG-ISKLVSLQLLDISYTRVREL-----PEEL 417 (700)
Q Consensus 349 ~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~l~~~~l~~l-----p~~~ 417 (700)
.++|+.|++++|.++......+. ..++|+.|+|++|......... ...+++|++|++++|++... ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 36789999999998765433332 3378999999999432222222 23467899999999988722 2223
Q ss_pred -hcCCCCCEEecccccCcc----ccchhhhcCCCccceeeccccCcccccCcccchHHHHhcCCCcceEEEEEecchhh
Q 005367 418 -KALVNLRCLNLDWAGELV----KVPQQLLSNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEITFRRFEAY 491 (700)
Q Consensus 418 -~~l~~L~~L~l~~~~~~~----~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 491 (700)
...++|+.|++++|.... .++.. +..+++|++|++++|.+... ........+..+++|++|++++|.+...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~-L~~~~~L~~L~Ls~N~l~~~--g~~~L~~~L~~~~~L~~L~Ls~N~i~~~ 226 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEG-LAGNTSVTHLSLLHTGLGDE--GLELLAAQLDRNRQLQELNVAYNGAGDT 226 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHH-HHTCSSCCEEECTTSSCHHH--HHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHH-HhcCCCcCEEeCCCCCCCcH--HHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence 246889999999986432 12222 56788999999999887431 1123355667788999999999887654
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.52 E-value=1.5e-07 Score=97.17 Aligned_cols=101 Identities=23% Similarity=0.199 Sum_probs=88.1
Q ss_pred EEEcCC-CCCCCCccccccccceeeeecc-ccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCc
Q 005367 310 LVYAGS-GLTEAPADVRGWEMGRRLSLMK-NSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNE 385 (700)
Q Consensus 310 ~~~~~~-~~~~~~~~~~~~~~l~~l~l~~-~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 385 (700)
+...+. ++..+|. +..+++|+.|++++ |.++.++ .|..+++|+.|+|++|.++.+++..|.++++|++|+|++|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N- 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN- 90 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-
Confidence 455666 8999999 99999999999996 9999988 4899999999999999999999998999999999999999
Q ss_pred ccccCCcccccccccceeccccCcccc
Q 005367 386 TLRQLPMGISKLVSLQLLDISYTRVRE 412 (700)
Q Consensus 386 ~~~~lp~~~~~l~~L~~L~l~~~~l~~ 412 (700)
.++.+|..+.....|++|++.+|.+..
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCccC
Confidence 677777664443349999999998873
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.51 E-value=2.5e-06 Score=89.53 Aligned_cols=118 Identities=14% Similarity=0.167 Sum_probs=63.7
Q ss_pred cCcCccccccEEEEeccccccceeecccccccccCCccccCCccEEeeecCcCccccc--ccccCCCCceEEeeeccccc
Q 005367 521 AGLADLEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLT--FLVFAPNLKSISVCLCDDME 598 (700)
Q Consensus 521 ~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~l~ 598 (700)
..+.++.+|+++.+.+.. ..+..... ..+++|+++.+.. .+..++ .+..+.+|+.+.|.. .++
T Consensus 259 ~aF~~c~~L~~i~lp~~~--~~I~~~aF---------~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~ 323 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSV--VSIGTGAF---------MNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GIT 323 (394)
T ss_dssp TTTTTCSSCCEEECCTTC--CEECTTTT---------TTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCC
T ss_pred ceeeecccccEEeccccc--ceecCccc---------ccccccccccCCC--cccccCceeecCCCCcCEEEeCC--ccc
Confidence 345666777777664321 11111111 2467777777754 344443 356777888887753 344
Q ss_pred cccccccCCCCCCccCCCCCCCCccceeeccCcccccccccCC-CCCCCccEEEEc----------CCCCCCCCCCCCCC
Q 005367 599 EIISAGEFDDIPEMTGIISSPFAKLQRLRLEGLGRLKSIYWKP-LPLPRLKELEVR----------GCDSLEKLPLDSNG 667 (700)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~i~----------~C~~L~~lp~~~~~ 667 (700)
.+.. ..+.++.+|+.+.|-. +++.++... ..+++|+.+++. .|.+|+.+...++.
T Consensus 324 ~I~~------------~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 324 QILD------------DAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp EECT------------TTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC---------
T ss_pred EehH------------hHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCceeehhhhhccCCCCEEEeCCCC
Confidence 4433 4667778888888853 466665432 246788888774 46777776665543
No 162
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.47 E-value=1.8e-06 Score=82.61 Aligned_cols=154 Identities=13% Similarity=0.085 Sum_probs=91.4
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
++|+|||++|+++++... ....-...+.++.............+........ ...+++.+||
T Consensus 46 ~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~vli 107 (226)
T 2chg_A 46 PPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKIKEFARTAP-----------------IGGAPFKIIF 107 (226)
T ss_dssp STTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSCC-----------------STTCSCEEEE
T ss_pred CCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHHHHHHhcccC-----------------CCccCceEEE
Confidence 479999999999998751 1111123444454443333332222222111000 0125788999
Q ss_pred EcCCCch--hhhhhh---cCcCCCCcEEEEecCchhhh-hcc-cCcceEeccCCChHhHHHHHHHHhcccccCCCCChHH
Q 005367 81 LDDLWER--VDLKKI---GVPLPKNSAVVFTTRFVDVC-GRM-EARRTFKVECLSDEAAWELFREKVGEETIESHHSIPE 153 (700)
Q Consensus 81 lDdv~~~--~~~~~l---~~~~~~gs~iiiTTr~~~~~-~~~-~~~~~~~l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~ 153 (700)
|||++.. ...+.+ ....+.+.++|+||+..... ..+ .....+++++++.++..+++.+.+...+.. -.++
T Consensus 108 iDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~---~~~~ 184 (226)
T 2chg_A 108 LDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK---ITED 184 (226)
T ss_dssp EETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC---BCHH
T ss_pred EeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCC---CCHH
Confidence 9999765 222222 22334578888888765321 111 122478999999999999999887543322 2267
Q ss_pred HHHHHHHHhCCCchHHHHHHHH
Q 005367 154 LAQTVAKECGGLPLALITIGRA 175 (700)
Q Consensus 154 ~~~~i~~~~~g~Plai~~~~~~ 175 (700)
....+++.++|.|..+..+...
T Consensus 185 ~~~~l~~~~~g~~r~l~~~l~~ 206 (226)
T 2chg_A 185 GLEALIYISGGDFRKAINALQG 206 (226)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 7888999999999865544433
No 163
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.47 E-value=8e-08 Score=86.63 Aligned_cols=87 Identities=10% Similarity=0.091 Sum_probs=54.2
Q ss_pred CCccEEeeecCcCccc--ccccccCCCCceEEeeeccccccccccccCCCCCCccCCCCCC----CCccceeeccCcccc
Q 005367 561 RSLEEVTVRFCRKLKH--LTFLVFAPNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSP----FAKLQRLRLEGLGRL 634 (700)
Q Consensus 561 ~~L~~L~l~~~~~l~~--l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~L~~L~l~~c~~l 634 (700)
.+|++|++++|. +++ +..+..+++|+.|+|++|..++|... ..+.. .++|+.|+|++|+++
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL------------~~L~~~~~~~~~L~~L~Ls~C~~I 127 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL------------ERLSQLENLQKSMLEMEIISCGNV 127 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHH------------HHHHTCHHHHHHCCEEEEESCTTC
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHH------------HHHHhcccccCCCCEEEcCCCCcC
Confidence 356777777774 333 34456677777777777777666533 12222 246777777777776
Q ss_pred cccccC-CCCCCCccEEEEcCCCCCCC
Q 005367 635 KSIYWK-PLPLPRLKELEVRGCDSLEK 660 (700)
Q Consensus 635 ~~l~~~-~~~~~~L~~L~i~~C~~L~~ 660 (700)
++-... ...+++|++|++++|+++++
T Consensus 128 TD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 128 TDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp CHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 654332 22467788888888877776
No 164
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.41 E-value=8.3e-08 Score=86.53 Aligned_cols=66 Identities=17% Similarity=0.233 Sum_probs=31.1
Q ss_pred ccCCccEEeeecCcCcccc--cccccC----CCCceEEeeeccccccccccccCCCCCCccCCCCCCCCccceeeccCcc
Q 005367 559 VFRSLEEVTVRFCRKLKHL--TFLVFA----PNLKSISVCLCDDMEEIISAGEFDDIPEMTGIISSPFAKLQRLRLEGLG 632 (700)
Q Consensus 559 ~~~~L~~L~l~~~~~l~~l--~~l~~l----~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 632 (700)
.+++|++|+|++|..+++- ..++.+ ++|++|+|++|..+++... ..+..+++|+.|+|++|+
T Consensus 83 ~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl------------~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI------------IALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH------------HHGGGCTTCCEEEEESCT
T ss_pred CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH------------HHHhcCCCCCEEECCCCC
Confidence 3455555555555444431 223322 3455555555555555432 123345555555555555
Q ss_pred cccc
Q 005367 633 RLKS 636 (700)
Q Consensus 633 ~l~~ 636 (700)
.+++
T Consensus 151 ~Itd 154 (176)
T 3e4g_A 151 GVKE 154 (176)
T ss_dssp TCCC
T ss_pred CCCc
Confidence 5554
No 165
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.13 E-value=2.4e-05 Score=79.62 Aligned_cols=143 Identities=12% Similarity=0.045 Sum_probs=84.2
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
++|+|||++|+++++.. .. ..++++........++.. .+ ...+ .++.+|+
T Consensus 46 ~~GtGKT~la~~i~~~~---~~---~~~~~~~~~~~~~~~l~~----~l-------------------~~~~-~~~~~l~ 95 (324)
T 1hqc_A 46 PPGLGKTTLAHVIAHEL---GV---NLRVTSGPAIEKPGDLAA----IL-------------------ANSL-EEGDILF 95 (324)
T ss_dssp CTTCCCHHHHHHHHHHH---TC---CEEEECTTTCCSHHHHHH----HH-------------------TTTC-CTTCEEE
T ss_pred CCCCCHHHHHHHHHHHh---CC---CEEEEeccccCChHHHHH----HH-------------------HHhc-cCCCEEE
Confidence 47999999999999886 22 233444333222211111 11 1101 2456888
Q ss_pred EcCCCchh--hhhhhcCcC---------------------CCCcEEEEecCchhhh-hcc-c-CcceEeccCCChHhHHH
Q 005367 81 LDDLWERV--DLKKIGVPL---------------------PKNSAVVFTTRFVDVC-GRM-E-ARRTFKVECLSDEAAWE 134 (700)
Q Consensus 81 lDdv~~~~--~~~~l~~~~---------------------~~gs~iiiTTr~~~~~-~~~-~-~~~~~~l~~L~~~~a~~ 134 (700)
||+++... ..+.+...+ .++..+|.||...... ..+ . -...+.+++++.++..+
T Consensus 96 lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~ 175 (324)
T 1hqc_A 96 IDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQ 175 (324)
T ss_dssp ETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHH
T ss_pred EECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHH
Confidence 89887652 111111100 0135666666543221 111 1 13578999999999999
Q ss_pred HHHHHhcccccCCCCChHHHHHHHHHHhCCCchHHHHHHHHh
Q 005367 135 LFREKVGEETIESHHSIPELAQTVAKECGGLPLALITIGRAM 176 (700)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 176 (700)
++.+.+...+.. -.++....+++.++|.|..+..+...+
T Consensus 176 ~l~~~~~~~~~~---~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 176 GVMRDARLLGVR---ITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp HHHHHHHTTTCC---CCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC---CCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 998887543322 236788999999999998877766554
No 166
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.13 E-value=9.4e-06 Score=82.56 Aligned_cols=152 Identities=15% Similarity=0.127 Sum_probs=88.1
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTL-SKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~Ll 79 (700)
++|+|||++|+.+++.... ......+++++.++...... ...+++.+.... ..+ .+++.++
T Consensus 50 ~~G~GKt~la~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~----------------~~~~~~~~~vi 111 (323)
T 1sxj_B 50 MPGIGKTTSVHCLAHELLG-RSYADGVLELNASDDRGIDV-VRNQIKHFAQKK----------------LHLPPGKHKIV 111 (323)
T ss_dssp STTSSHHHHHHHHHHHHHG-GGHHHHEEEECTTSCCSHHH-HHTHHHHHHHBC----------------CCCCTTCCEEE
T ss_pred cCCCCHHHHHHHHHHHhcC-CcccCCEEEecCccccChHH-HHHHHHHHHhcc----------------ccCCCCCceEE
Confidence 5799999999999988511 11112234444333222211 111222111000 001 3468999
Q ss_pred EEcCCCch--hhhhhh---cCcCCCCcEEEEecCchhh-hhcc-cCcceEeccCCChHhHHHHHHHHhcccccCCCCChH
Q 005367 80 LLDDLWER--VDLKKI---GVPLPKNSAVVFTTRFVDV-CGRM-EARRTFKVECLSDEAAWELFREKVGEETIESHHSIP 152 (700)
Q Consensus 80 VlDdv~~~--~~~~~l---~~~~~~gs~iiiTTr~~~~-~~~~-~~~~~~~l~~L~~~~a~~l~~~~~~~~~~~~~~~~~ 152 (700)
|+||++.. ...+.+ ....+++..+|+||+...- ...+ .....+++.+++.++..+++...+...+.. ..+
T Consensus 112 iiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~---~~~ 188 (323)
T 1sxj_B 112 ILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVK---YTN 188 (323)
T ss_dssp EEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC---BCH
T ss_pred EEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCC---CCH
Confidence 99999764 223333 2223457888888875432 1111 123479999999999999999887543322 226
Q ss_pred HHHHHHHHHhCCCch-HHHHHH
Q 005367 153 ELAQTVAKECGGLPL-ALITIG 173 (700)
Q Consensus 153 ~~~~~i~~~~~g~Pl-ai~~~~ 173 (700)
+....+++.++|.|. |++.+.
T Consensus 189 ~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 189 DGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 778899999999995 444443
No 167
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.12 E-value=4.2e-06 Score=86.03 Aligned_cols=114 Identities=23% Similarity=0.241 Sum_probs=63.0
Q ss_pred ccccCCCcceEEEccCCcccccCCcccccccccceeccccCccc-ccchhhh--cCCCCCEEecccccC-------cccc
Q 005367 368 GFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQLLDISYTRVR-ELPEELK--ALVNLRCLNLDWAGE-------LVKV 437 (700)
Q Consensus 368 ~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~l~-~lp~~~~--~l~~L~~L~l~~~~~-------~~~~ 437 (700)
..+..+|+|+.|+|++|... .++. + .+++|++|++..+.+. .....+. .+++|++|+|+.+.. ...+
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 44567788888888877322 3333 3 2678888888877765 2222333 678888888753211 1111
Q ss_pred chhh-hcCCCccceeeccccCcccccCcccchHHHH---hcCCCcceEEEEEecchh
Q 005367 438 PQQL-LSNFSRLRVLRMFATGLISFYSWHENVAEEL---LGLKYLEVLEITFRRFEA 490 (700)
Q Consensus 438 p~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~~ 490 (700)
.... .+.+++|+.|++.+|.+... ....+ ..+++|++|+|+.|.+..
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~------~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNV------VVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHH------HHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchH------HHHHHHhCccCCCCCEEECCCCCCCh
Confidence 1110 12467777777776655321 11122 245667777776665543
No 168
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.02 E-value=8.3e-05 Score=77.87 Aligned_cols=103 Identities=16% Similarity=0.110 Sum_probs=62.7
Q ss_pred cCcCccccccEEEEeccccccceeecccccccccCCccccCCccEEeeecCcCccccc--ccccCCCCceEEeeeccccc
Q 005367 521 AGLADLEQLNTLIFYSCDWIKGLKIDYKDMVQKSRQPYVFRSLEEVTVRFCRKLKHLT--FLVFAPNLKSISVCLCDDME 598 (700)
Q Consensus 521 ~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~l~~l~~L~~L~l~~~~~l~ 598 (700)
..+.++++|+++.+.. .+..++...+ ..+.+|+++.|.. .++.+. .+..+.+|+.+.|.. .++
T Consensus 282 ~aF~~c~~L~~i~l~~--~i~~I~~~aF---------~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~--sv~ 346 (394)
T 4gt6_A 282 GAFMNCPALQDIEFSS--RITELPESVF---------AGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS--SVT 346 (394)
T ss_dssp TTTTTCTTCCEEECCT--TCCEECTTTT---------TTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT--TCC
T ss_pred cccccccccccccCCC--cccccCceee---------cCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc--ccC
Confidence 4567788899888853 2443333333 2578999999975 344443 477889999999863 355
Q ss_pred cccccccCCCCCCccCCCCCCCCccceeeccCcccccccccCCCCCCCccEEEEc
Q 005367 599 EIISAGEFDDIPEMTGIISSPFAKLQRLRLEGLGRLKSIYWKPLPLPRLKELEVR 653 (700)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~i~ 653 (700)
.+.. ..+.++++|+.+.+.+.. ..+. ....+.+|+.|.+.
T Consensus 347 ~I~~------------~aF~~C~~L~~i~~~~~~--~~~~-~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 347 KIPE------------SAFSNCTALNNIEYSGSR--SQWN-AISTDSGLQNLPVA 386 (394)
T ss_dssp BCCG------------GGGTTCTTCCEEEESSCH--HHHH-TCBCCCCC------
T ss_pred EEhH------------hHhhCCCCCCEEEECCce--eehh-hhhccCCCCEEEeC
Confidence 5533 467788999999997632 2221 23346778877764
No 169
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.96 E-value=0.00017 Score=74.95 Aligned_cols=124 Identities=8% Similarity=0.117 Sum_probs=69.6
Q ss_pred ccccccceeeeeccccccCCC--CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccccccccc
Q 005367 324 VRGWEMGRRLSLMKNSIKNLP--TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGISKLVSLQ 401 (700)
Q Consensus 324 ~~~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~ 401 (700)
+....+++.+.+. ..++.++ .|.+|.+|+.+.+..+ ++.+....|.++ .|+.+.+..+ +..++...-...+|+
T Consensus 42 ~~~~~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~~L~ 116 (379)
T 4h09_A 42 YKDRDRISEVRVN-SGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQGTDLD 116 (379)
T ss_dssp GGGGGGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTTCCCS
T ss_pred cccccCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce--eeEeccceeccCCcc
Confidence 3344567777765 3466665 5788888888888654 677777777777 4666655543 444433322223677
Q ss_pred eeccccCcccccchhhhcCCCCCEEecccccCccccchhhhcCCCccceeeccc
Q 005367 402 LLDISYTRVRELPEELKALVNLRCLNLDWAGELVKVPQQLLSNFSRLRVLRMFA 455 (700)
Q Consensus 402 ~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~ 455 (700)
.+.+..+ +..+........+|..+.+..+ +..+....+.++.+++...+..
T Consensus 117 ~i~lp~~-~~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 117 DFEFPGA-TTEIGNYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSS 167 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEEECT
T ss_pred cccCCCc-cccccccccccceeeeeeccce--eeccccchhccccccccccccc
Confidence 7777654 2333222222335555554432 3334433355666666666543
No 170
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.92 E-value=1.1e-05 Score=82.92 Aligned_cols=137 Identities=17% Similarity=0.149 Sum_probs=64.1
Q ss_pred CCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCCcccc--cccccceeccccC--c------ccccchhh
Q 005367 348 TCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLPMGIS--KLVSLQLLDISYT--R------VRELPEEL 417 (700)
Q Consensus 348 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~--~l~~L~~L~l~~~--~------l~~lp~~~ 417 (700)
.+++|+.|.++++.-...++ + .+++|+.|+|..|.........++ .+++|++|+|+.+ . +..+...+
T Consensus 170 ~~P~L~~L~L~g~~~l~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l 246 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLSIGK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246 (362)
T ss_dssp TCTTCCEEEEECCBTCBCCS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred cCCCCcEEEEeCCCCceecc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence 44556666665552111111 2 255666666655522111111222 4566666665421 1 11111111
Q ss_pred --hcCCCCCEEecccccCccccchhhh--cCCCccceeeccccCcccccCcccchHHHHhcCCCcceEEEEEecch
Q 005367 418 --KALVNLRCLNLDWAGELVKVPQQLL--SNFSRLRVLRMFATGLISFYSWHENVAEELLGLKYLEVLEITFRRFE 489 (700)
Q Consensus 418 --~~l~~L~~L~l~~~~~~~~~p~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 489 (700)
..+++|++|++.+|......+.... ..+++|++|+++.|.+... .....+..+..+++|+.|+++.|.+.
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~--G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE--GARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH--HHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH--HHHHHHhhcccCCcceEEECCCCcCC
Confidence 2467777777776654332222211 2456777777776654221 00112223345677777777777654
No 171
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.85 E-value=3.8e-05 Score=78.14 Aligned_cols=100 Identities=16% Similarity=0.083 Sum_probs=66.0
Q ss_pred cCcEEEEEcCCCch--hhhhhh---cCcCCCCcEEEEecCchhhh-hcc-cCcceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWER--VDLKKI---GVPLPKNSAVVFTTRFVDVC-GRM-EARRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~--~~~~~l---~~~~~~gs~iiiTTr~~~~~-~~~-~~~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
+++.++|+|+++.. ...+.+ ....+.+.++|+||+...-. ..+ .....+++.+++.++..+++...+...+..
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~ 188 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE 188 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCE
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence 56789999999765 223333 22344578888888764321 111 112478999999999999998877543322
Q ss_pred CCCChHHHHHHHHHHhCCCchHHHHHHHHh
Q 005367 147 SHHSIPELAQTVAKECGGLPLALITIGRAM 176 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 176 (700)
. .++....+++.++|.|..+..+....
T Consensus 189 ~---~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 189 L---TEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp E---CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred C---CHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 2 26788899999999998655444333
No 172
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.84 E-value=1.2e-05 Score=77.84 Aligned_cols=140 Identities=9% Similarity=0.072 Sum_probs=84.0
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
++|+|||++|+++++.. ......+.|+++...... +.+.+ ..+ .+..+||
T Consensus 60 ~~G~GKT~la~~l~~~~---~~~~~~~~~~~~~~~~~~------~~~~~--------------------~~~-~~~~vli 109 (242)
T 3bos_A 60 PVKSGRTHLIHAACARA---NELERRSFYIPLGIHASI------STALL--------------------EGL-EQFDLIC 109 (242)
T ss_dssp STTSSHHHHHHHHHHHH---HHTTCCEEEEEGGGGGGS------CGGGG--------------------TTG-GGSSEEE
T ss_pred CCCCCHHHHHHHHHHHH---HHcCCeEEEEEHHHHHHH------HHHHH--------------------Hhc-cCCCEEE
Confidence 47999999999999987 222345667765432110 00000 011 3457899
Q ss_pred EcCCCchhh----hhhhcCc----CCCCc-EEEEecCchh---------hhhcccCcceEeccCCChHhHHHHHHHHhcc
Q 005367 81 LDDLWERVD----LKKIGVP----LPKNS-AVVFTTRFVD---------VCGRMEARRTFKVECLSDEAAWELFREKVGE 142 (700)
Q Consensus 81 lDdv~~~~~----~~~l~~~----~~~gs-~iiiTTr~~~---------~~~~~~~~~~~~l~~L~~~~a~~l~~~~~~~ 142 (700)
|||++.... .+.+... ...+. ++|+||+... +...+.....+++++++.++..+++...+..
T Consensus 110 iDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~ 189 (242)
T 3bos_A 110 IDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAM 189 (242)
T ss_dssp EETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHH
T ss_pred EeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHH
Confidence 999975521 2222221 11233 4777776322 1111122367999999999999999888754
Q ss_pred cccCCCCChHHHHHHHHHHhCCCchHHHHHH
Q 005367 143 ETIESHHSIPELAQTVAKECGGLPLALITIG 173 (700)
Q Consensus 143 ~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 173 (700)
.+. .-.++....+++.++|.+..+..+.
T Consensus 190 ~~~---~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 190 RGL---QLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp TTC---CCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred cCC---CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 332 2236788899999999886665443
No 173
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.84 E-value=7.7e-06 Score=75.59 Aligned_cols=95 Identities=20% Similarity=0.099 Sum_probs=50.5
Q ss_pred cccccccceeccccCccc-----ccchhhhcCCCCCEEecccccCccc----cchhhhcCCCccceeec--cccCccccc
Q 005367 394 ISKLVSLQLLDISYTRVR-----ELPEELKALVNLRCLNLDWAGELVK----VPQQLLSNFSRLRVLRM--FATGLISFY 462 (700)
Q Consensus 394 ~~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~----~p~~~~~~l~~L~~L~l--~~~~~~~~~ 462 (700)
+...++|++|++++|.+. .+...+...++|++|++++|..... +... +...++|++|++ ++|.+...
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~- 138 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA-LQSNTSLIELRIDNQSQPLGNN- 138 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG-GGGCSSCCEEECCCCSSCCCHH-
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH-HHhCCCceEEEecCCCCCCCHH-
Confidence 334455555555555554 2333445556666666666643221 1222 445566777777 55555321
Q ss_pred CcccchHHHHhcCCCcceEEEEEecchhh
Q 005367 463 SWHENVAEELLGLKYLEVLEITFRRFEAY 491 (700)
Q Consensus 463 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 491 (700)
........+...++|++|++++|.+...
T Consensus 139 -g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 139 -VEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp -HHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred -HHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 1112344555667788888877776543
No 174
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.00017 Score=71.96 Aligned_cols=139 Identities=12% Similarity=0.067 Sum_probs=84.3
Q ss_pred CCCCcHHHHHHHHHhhcccCCCC--C--CEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh---c
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTD--F--DYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTL---S 73 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~--f--~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l---~ 73 (700)
++|+|||++|+.+++........ . -.++.|++....+.......|++++..... ......+....+...+ .
T Consensus 53 pPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~--~~~~~~~~L~~~f~~~~~~~ 130 (318)
T 3te6_A 53 ADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENL--CGDISLEALNFYITNVPKAK 130 (318)
T ss_dssp CCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC----CCCCHHHHHHHHHHSCGGG
T ss_pred CCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCC--CchHHHHHHHHHHHHhhhcc
Confidence 58999999999999987322211 1 246788888888999999999999954321 1222334444444443 3
Q ss_pred cCcEEEEEcCCCchhh---hhhhcCc-CCCCc--EEEEecCchhhh---------hcccCcceEeccCCChHhHHHHHHH
Q 005367 74 KKKFALLLDDLWERVD---LKKIGVP-LPKNS--AVVFTTRFVDVC---------GRMEARRTFKVECLSDEAAWELFRE 138 (700)
Q Consensus 74 ~~r~LlVlDdv~~~~~---~~~l~~~-~~~gs--~iiiTTr~~~~~---------~~~~~~~~~~l~~L~~~~a~~l~~~ 138 (700)
++.+++|||+++...+ +-.+... -..++ .||.++...+.. .++. ...+..++++.+|-.+++.+
T Consensus 131 ~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~ 209 (318)
T 3te6_A 131 KRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAH-FTEIKLNKVDKNELQQMIIT 209 (318)
T ss_dssp SCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHH
T ss_pred CCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHH
Confidence 5679999999987532 2222110 01233 333444433221 1111 24689999999999999998
Q ss_pred Hhcc
Q 005367 139 KVGE 142 (700)
Q Consensus 139 ~~~~ 142 (700)
++..
T Consensus 210 Rl~~ 213 (318)
T 3te6_A 210 RLKS 213 (318)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8843
No 175
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.80 E-value=0.00011 Score=77.76 Aligned_cols=151 Identities=21% Similarity=0.153 Sum_probs=90.7
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
++|+|||+||+++++...... .-..++++++. .+...+...+... .. ..+...++.+..+||
T Consensus 138 p~G~GKTtLa~aia~~l~~~~-~~~~v~~v~~~------~~~~~~~~~~~~~-------~~----~~~~~~~~~~~~vL~ 199 (440)
T 2z4s_A 138 GVGLGKTHLLQSIGNYVVQNE-PDLRVMYITSE------KFLNDLVDSMKEG-------KL----NEFREKYRKKVDILL 199 (440)
T ss_dssp SSSSSHHHHHHHHHHHHHHHC-CSSCEEEEEHH------HHHHHHHHHHHTT-------CH----HHHHHHHTTTCSEEE
T ss_pred CCCCCHHHHHHHHHHHHHHhC-CCCeEEEeeHH------HHHHHHHHHHHcc-------cH----HHHHHHhcCCCCEEE
Confidence 479999999999998762111 12234556532 2344444444211 11 123333343677999
Q ss_pred EcCCCchh----hhhhhcCc----CCCCcEEEEecCchh---------hhhcccCcceEeccCCChHhHHHHHHHHhccc
Q 005367 81 LDDLWERV----DLKKIGVP----LPKNSAVVFTTRFVD---------VCGRMEARRTFKVECLSDEAAWELFREKVGEE 143 (700)
Q Consensus 81 lDdv~~~~----~~~~l~~~----~~~gs~iiiTTr~~~---------~~~~~~~~~~~~l~~L~~~~a~~l~~~~~~~~ 143 (700)
|||++... ..+.+... ...|..||+||.+.. +..++.....+++++++.++-.+++.+.+...
T Consensus 200 IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~ 279 (440)
T 2z4s_A 200 IDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIE 279 (440)
T ss_dssp EECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHH
T ss_pred EeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHc
Confidence 99996442 12222222 344788999887521 22223334678999999999999998887543
Q ss_pred ccCCCCChHHHHHHHHHHhCCCchHHHHH
Q 005367 144 TIESHHSIPELAQTVAKECGGLPLALITI 172 (700)
Q Consensus 144 ~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 172 (700)
+...+ ++....|++.++|.+..+..+
T Consensus 280 ~~~i~---~e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 280 HGELP---EEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp TCCCC---TTHHHHHHHHCCSCHHHHHHH
T ss_pred CCCCC---HHHHHHHHHhcCCCHHHHHHH
Confidence 32333 456778889999888655443
No 176
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.69 E-value=0.0003 Score=72.92 Aligned_cols=98 Identities=14% Similarity=0.143 Sum_probs=64.1
Q ss_pred cCcEEEEEcCCCch--hhhhhhc---CcCCCCcEEEEecCchhh-hhcc-cCcceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWER--VDLKKIG---VPLPKNSAVVFTTRFVDV-CGRM-EARRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~--~~~~~l~---~~~~~gs~iiiTTr~~~~-~~~~-~~~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
+++.++|+||++.. ...+.+. ...+.+..+|++|.+..- ...+ .....+++.+++.++..+++.+.+...+..
T Consensus 118 ~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~ 197 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 (373)
T ss_dssp SSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC
T ss_pred CCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 46789999999754 2233332 223446677777764332 1111 123578999999999999998877443322
Q ss_pred CCCChHHHHHHHHHHhCCCchHHHHHHH
Q 005367 147 SHHSIPELAQTVAKECGGLPLALITIGR 174 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~Plai~~~~~ 174 (700)
..++....+++.++|.|..+..+..
T Consensus 198 ---~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 198 ---HEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp ---BCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 2267788999999999987765543
No 177
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.69 E-value=6.7e-06 Score=79.99 Aligned_cols=80 Identities=24% Similarity=0.308 Sum_probs=43.3
Q ss_pred cCCCcceEEEccCCccccc---CCcccccccccceeccccCcccccchhhhcCC--CCCEEecccccCccccch------
Q 005367 371 QSMPCLTVLKMSGNETLRQ---LPMGISKLVSLQLLDISYTRVRELPEELKALV--NLRCLNLDWAGELVKVPQ------ 439 (700)
Q Consensus 371 ~~~~~L~~L~L~~~~~~~~---lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~--~L~~L~l~~~~~~~~~p~------ 439 (700)
.++++|+.|+|++|. ++. +|..+..+++|+.|+|++|++..+ ..+..+. +|++|++.+|.....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 356667777777763 333 334445566666666666666644 2233333 666666666654433331
Q ss_pred hhhcCCCccceee
Q 005367 440 QLLSNFSRLRVLR 452 (700)
Q Consensus 440 ~~~~~l~~L~~L~ 452 (700)
.++..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 1244555555555
No 178
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.68 E-value=1.8e-05 Score=73.15 Aligned_cols=112 Identities=14% Similarity=0.096 Sum_probs=76.4
Q ss_pred CCCCCceeEEEecCC-CCccc----ccccccCCCcceEEEccCCccccc-----CCcccccccccceeccccCcccc---
Q 005367 346 IPTCPHLLTLFLNRN-PLTTI----AGGFFQSMPCLTVLKMSGNETLRQ-----LPMGISKLVSLQLLDISYTRVRE--- 412 (700)
Q Consensus 346 ~~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~L~~~~~~~~-----lp~~~~~l~~L~~L~l~~~~l~~--- 412 (700)
+...++|+.|+|++| .+... ....+...++|++|+|++|. ++. +...+...++|++|++++|.+..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 355678888888888 76543 22335567888888888884 432 33345556788999999988772
Q ss_pred --cchhhhcCCCCCEEec--ccccCccc----cchhhhcCCCccceeeccccCcc
Q 005367 413 --LPEELKALVNLRCLNL--DWAGELVK----VPQQLLSNFSRLRVLRMFATGLI 459 (700)
Q Consensus 413 --lp~~~~~l~~L~~L~l--~~~~~~~~----~p~~~~~~l~~L~~L~l~~~~~~ 459 (700)
+...+...+.|++|++ ++|..... +.. .+...++|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCCCCC
Confidence 4566777888999999 66643322 222 2556688999999888763
No 179
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.65 E-value=0.00026 Score=71.62 Aligned_cols=97 Identities=12% Similarity=0.058 Sum_probs=64.0
Q ss_pred cCcEEEEEcCCCch--hhhhhh---cCcCCCCcEEEEecCchhh-hhcc-cCcceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWER--VDLKKI---GVPLPKNSAVVFTTRFVDV-CGRM-EARRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~--~~~~~l---~~~~~~gs~iiiTTr~~~~-~~~~-~~~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
+++.++|+|+++.. ...+.+ ....+++.++|+||....- ...+ .....+++.+++.++..+++...+...+..
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 180 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK 180 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCC
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 56789999999765 223333 3333447778888765432 1111 122479999999999999998887543322
Q ss_pred CCCChHHHHHHHHHHhCCCchHHHHHH
Q 005367 147 SHHSIPELAQTVAKECGGLPLALITIG 173 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~Plai~~~~ 173 (700)
-.++....+++.++|.+..+....
T Consensus 181 ---i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 181 ---ITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp ---BCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred ---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 236778889999999887654443
No 180
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.63 E-value=0.00074 Score=66.46 Aligned_cols=162 Identities=19% Similarity=0.198 Sum_probs=85.6
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHH-HHHHHhccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQ-DIFKTLSKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~r~Ll 79 (700)
++|+|||++|+++++.. . ... +.++..+. .++. .......... .+......+..+|
T Consensus 72 ~~GtGKT~la~~ia~~~---~--~~~-~~i~~~~~------------~~g~-----~~~~~~~~~~~~~~~~~~~~~~vl 128 (272)
T 1d2n_A 72 PPHSGKTALAAKIAEES---N--FPF-IKICSPDK------------MIGF-----SETAKCQAMKKIFDDAYKSQLSCV 128 (272)
T ss_dssp STTSSHHHHHHHHHHHH---T--CSE-EEEECGGG------------CTTC-----CHHHHHHHHHHHHHHHHTSSEEEE
T ss_pred CCCCcHHHHHHHHHHHh---C--CCE-EEEeCHHH------------hcCC-----chHHHHHHHHHHHHHHHhcCCcEE
Confidence 47999999999999986 2 222 22232210 0110 0111111222 2222334568899
Q ss_pred EEcCCCch---------------hhhhhhcCcCC-C--CcEEEEecCchhhhhc--c-c-CcceEeccCCCh-HhHHHHH
Q 005367 80 LLDDLWER---------------VDLKKIGVPLP-K--NSAVVFTTRFVDVCGR--M-E-ARRTFKVECLSD-EAAWELF 136 (700)
Q Consensus 80 VlDdv~~~---------------~~~~~l~~~~~-~--gs~iiiTTr~~~~~~~--~-~-~~~~~~l~~L~~-~~a~~l~ 136 (700)
|||+++.. ..+..+..... . ...||.||...+.... . . -...+++++++. ++..+++
T Consensus 129 ~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~ 208 (272)
T 1d2n_A 129 VVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEAL 208 (272)
T ss_dssp EECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHH
T ss_pred EEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHH
Confidence 99998653 11222222221 2 3346677877655432 1 1 145689999998 5555555
Q ss_pred HHHhcccccCCCCChHHHHHHHHHHhCC------CchHHHHHHHHhccCCChHHHHHHHHHHHh
Q 005367 137 REKVGEETIESHHSIPELAQTVAKECGG------LPLALITIGRAMAYKKTPEEWRYAIEVLRR 194 (700)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g------~Plai~~~~~~l~~~~~~~~~~~~l~~~~~ 194 (700)
.+. .. -..+....+++.+.| .+.+++.+-.... ......+..+++.+..
T Consensus 209 ~~~-~~-------~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~-~~~~~~~~~~~~~l~~ 263 (272)
T 1d2n_A 209 ELL-GN-------FKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQ-MDPEYRVRKFLALLRE 263 (272)
T ss_dssp HHH-TC-------SCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTT-SCGGGHHHHHHHHHHH
T ss_pred Hhc-CC-------CCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhh-hchHHHHHHHHHHHHH
Confidence 442 11 126778889999887 4455554443332 2345566666665544
No 181
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.62 E-value=0.00025 Score=76.79 Aligned_cols=176 Identities=9% Similarity=0.059 Sum_probs=92.7
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
++|+|||++|+++++.. .+ .++.++++.......+ ...+........ ...-...... .....+++.+||
T Consensus 85 ppGtGKTtla~~la~~l-----~~-~~i~in~s~~~~~~~~-~~~i~~~~~~~~--~~~~~~~~~~--~~~~~~~~~vli 153 (516)
T 1sxj_A 85 PPGIGKTTAAHLVAQEL-----GY-DILEQNASDVRSKTLL-NAGVKNALDNMS--VVGYFKHNEE--AQNLNGKHFVII 153 (516)
T ss_dssp STTSSHHHHHHHHHHHT-----TC-EEEEECTTSCCCHHHH-HHTGGGGTTBCC--STTTTTC------CCSSTTSEEEE
T ss_pred CCCCCHHHHHHHHHHHc-----CC-CEEEEeCCCcchHHHH-HHHHHHHhcccc--HHHHHhhhhh--hhhccCCCeEEE
Confidence 57999999999999986 22 3445565554444322 222222211000 0000000000 001235778999
Q ss_pred EcCCCchhh-----hhhhcCcCC-CCcEEEEecCchh--hhhcc-cCcceEeccCCChHhHHHHHHHHhcccccCCCCCh
Q 005367 81 LDDLWERVD-----LKKIGVPLP-KNSAVVFTTRFVD--VCGRM-EARRTFKVECLSDEAAWELFREKVGEETIESHHSI 151 (700)
Q Consensus 81 lDdv~~~~~-----~~~l~~~~~-~gs~iiiTTr~~~--~~~~~-~~~~~~~l~~L~~~~a~~l~~~~~~~~~~~~~~~~ 151 (700)
||+++.... +..+...+. .+..||+++.+.. ....+ .....+++++++.++..+.+.+.+...+...+
T Consensus 154 IDEid~l~~~~~~~l~~L~~~l~~~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~--- 230 (516)
T 1sxj_A 154 MDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD--- 230 (516)
T ss_dssp ECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC---
T ss_pred EECCCccchhhHHHHHHHHHHHHhcCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC---
Confidence 999975521 222222111 1344555554322 11112 22357899999999999999887765443333
Q ss_pred HHHHHHHHHHhCC-CchHHHHHHHHhccC--CChHHHHHHHH
Q 005367 152 PELAQTVAKECGG-LPLALITIGRAMAYK--KTPEEWRYAIE 190 (700)
Q Consensus 152 ~~~~~~i~~~~~g-~Plai~~~~~~l~~~--~~~~~~~~~l~ 190 (700)
++....|++.++| ++.+++.+....... -+.+..+..+.
T Consensus 231 ~~~l~~la~~s~GdiR~~i~~L~~~~~~~~~It~~~v~~~~~ 272 (516)
T 1sxj_A 231 PNVIDRLIQTTRGDIRQVINLLSTISTTTKTINHENINEISK 272 (516)
T ss_dssp TTHHHHHHHHTTTCHHHHHHHHTHHHHHSSCCCTTHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 4567889999988 566666654333222 24444444443
No 182
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.57 E-value=0.00033 Score=71.03 Aligned_cols=142 Identities=17% Similarity=0.165 Sum_probs=82.3
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
++|+|||+||+.+++..... -..++++++. +....+...+.. ..... +.... .+..+|+
T Consensus 45 ~~GtGKT~la~~i~~~~~~~---~~~~~~i~~~------~~~~~~~~~~~~-------~~~~~----~~~~~-~~~~vL~ 103 (324)
T 1l8q_A 45 SVGTGKTHLLQAAGNEAKKR---GYRVIYSSAD------DFAQAMVEHLKK-------GTINE----FRNMY-KSVDLLL 103 (324)
T ss_dssp SSSSSHHHHHHHHHHHHHHT---TCCEEEEEHH------HHHHHHHHHHHH-------TCHHH----HHHHH-HTCSEEE
T ss_pred CCCCcHHHHHHHHHHHHHHC---CCEEEEEEHH------HHHHHHHHHHHc-------CcHHH----HHHHh-cCCCEEE
Confidence 47999999999999886221 2234556532 233333333311 11111 22222 2467999
Q ss_pred EcCCCchh----hhhhhcCc----CCCCcEEEEecCchh---------hhhcccCcceEeccCCChHhHHHHHHHHhccc
Q 005367 81 LDDLWERV----DLKKIGVP----LPKNSAVVFTTRFVD---------VCGRMEARRTFKVECLSDEAAWELFREKVGEE 143 (700)
Q Consensus 81 lDdv~~~~----~~~~l~~~----~~~gs~iiiTTr~~~---------~~~~~~~~~~~~l~~L~~~~a~~l~~~~~~~~ 143 (700)
||++.... ..+.+... ...|..||+||.+.. +..++.....+++++ +.++..+++...+...
T Consensus 104 iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~ 182 (324)
T 1l8q_A 104 LDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEF 182 (324)
T ss_dssp EECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHT
T ss_pred EcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhc
Confidence 99996542 11222222 233778888876321 122222335789999 9999999998887543
Q ss_pred ccCCCCChHHHHHHHHHHhCCCchH
Q 005367 144 TIESHHSIPELAQTVAKECGGLPLA 168 (700)
Q Consensus 144 ~~~~~~~~~~~~~~i~~~~~g~Pla 168 (700)
+... .++....+++.+ |..-.
T Consensus 183 ~~~l---~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 183 NLEL---RKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp TCCC---CHHHHHHHHHHC-SSHHH
T ss_pred CCCC---CHHHHHHHHHhC-CCHHH
Confidence 3222 267788888888 66543
No 183
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.51 E-value=0.0022 Score=65.36 Aligned_cols=70 Identities=11% Similarity=0.077 Sum_probs=45.8
Q ss_pred cEEEEecCchhhh-hcc--cCcceEeccCCChHhHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCCchHHHHHH
Q 005367 101 SAVVFTTRFVDVC-GRM--EARRTFKVECLSDEAAWELFREKVGEETIESHHSIPELAQTVAKECGGLPLALITIG 173 (700)
Q Consensus 101 s~iiiTTr~~~~~-~~~--~~~~~~~l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 173 (700)
..+|.+|...... ..+ +....+.+++++.++..+++.+.+...+.. -..+....+++.+.|.|-.+..+.
T Consensus 155 ~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~---~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 155 FTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKT---CEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp CEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCE---ECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred eEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHCcCHHHHHHHH
Confidence 4566666543321 111 123579999999999999998887543322 226778889999999986554443
No 184
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.47 E-value=0.00069 Score=71.50 Aligned_cols=145 Identities=14% Similarity=0.151 Sum_probs=80.0
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHH-HhccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFK-TLSKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~r~Ll 79 (700)
++|+|||++|+.+++.. ...| +-+++.. ..... ..+....... ...+++.+|
T Consensus 58 ppGtGKTtlAr~ia~~~---~~~f---~~l~a~~-~~~~~--------------------ir~~~~~a~~~~~~~~~~iL 110 (447)
T 3pvs_A 58 PPGTGKTTLAEVIARYA---NADV---ERISAVT-SGVKE--------------------IREAIERARQNRNAGRRTIL 110 (447)
T ss_dssp STTSSHHHHHHHHHHHT---TCEE---EEEETTT-CCHHH--------------------HHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCcHHHHHHHHHHHh---CCCe---EEEEecc-CCHHH--------------------HHHHHHHHHHhhhcCCCcEE
Confidence 47999999999999986 2222 1222111 11111 1111111111 113578999
Q ss_pred EEcCCCch--hhhhhhcCcCCCCcEEEE--ecCchhh--hhcc-cCcceEeccCCChHhHHHHHHHHhccccc----CCC
Q 005367 80 LLDDLWER--VDLKKIGVPLPKNSAVVF--TTRFVDV--CGRM-EARRTFKVECLSDEAAWELFREKVGEETI----ESH 148 (700)
Q Consensus 80 VlDdv~~~--~~~~~l~~~~~~gs~iii--TTr~~~~--~~~~-~~~~~~~l~~L~~~~a~~l~~~~~~~~~~----~~~ 148 (700)
+||+++.. .+.+.+...+..+..++| ||.+... ...+ .....+.+++++.++..+++.+.+..... ...
T Consensus 111 fIDEI~~l~~~~q~~LL~~le~~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~ 190 (447)
T 3pvs_A 111 FVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDI 190 (447)
T ss_dssp EEETTTCC------CCHHHHHTTSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSE
T ss_pred EEeChhhhCHHHHHHHHHHHhcCceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccC
Confidence 99999765 234444443434443333 5554321 1111 22357899999999999999888754110 111
Q ss_pred CChHHHHHHHHHHhCCCchHHHHH
Q 005367 149 HSIPELAQTVAKECGGLPLALITI 172 (700)
Q Consensus 149 ~~~~~~~~~i~~~~~g~Plai~~~ 172 (700)
.-.++....+++.++|.+..+..+
T Consensus 191 ~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 191 VLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp ECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCCHHHHHHH
Confidence 234678888999999987554433
No 185
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.41 E-value=0.0017 Score=65.90 Aligned_cols=91 Identities=11% Similarity=0.056 Sum_probs=59.7
Q ss_pred cCcEEEEEcCCCchh--hhhhhc---CcCCCCcEEEEecCchh-hhhccc-CcceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWERV--DLKKIG---VPLPKNSAVVFTTRFVD-VCGRME-ARRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~~--~~~~l~---~~~~~gs~iiiTTr~~~-~~~~~~-~~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
+++-++|+|+++... ....+. .-.+++..+|++|.+.+ +...+. .-..+++.++++++..+.+.+..
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~------ 180 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV------ 180 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC------
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc------
Confidence 467899999998652 223332 22334677777766543 322221 22478999999999999988775
Q ss_pred CCCChHHHHHHHHHHhCCCchHHHHH
Q 005367 147 SHHSIPELAQTVAKECGGLPLALITI 172 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~Plai~~~ 172 (700)
...++.+..+++.++|.|..+...
T Consensus 181 --~~~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 181 --TMSQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp --CCCHHHHHHHHHHTTTCHHHHHHT
T ss_pred --CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 112567788999999999665433
No 186
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.40 E-value=0.00016 Score=70.30 Aligned_cols=78 Identities=26% Similarity=0.348 Sum_probs=49.1
Q ss_pred CCCceeEEEecCCCCcccc--cccccCCCcceEEEccCCcccccCCccccccc--ccceeccccCccc-ccc-------h
Q 005367 348 TCPHLLTLFLNRNPLTTIA--GGFFQSMPCLTVLKMSGNETLRQLPMGISKLV--SLQLLDISYTRVR-ELP-------E 415 (700)
Q Consensus 348 ~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~--~L~~L~l~~~~l~-~lp-------~ 415 (700)
.+++|++|+|++|.++.+. +..+..+++|+.|+|++| .++.+ ..+..+. +|++|++++|.+. .+| .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 3556777777777666543 244556777777777777 44443 2333333 7777788777776 343 2
Q ss_pred hhhcCCCCCEEe
Q 005367 416 ELKALVNLRCLN 427 (700)
Q Consensus 416 ~~~~l~~L~~L~ 427 (700)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 366788888886
No 187
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.40 E-value=0.00057 Score=70.69 Aligned_cols=49 Identities=12% Similarity=0.043 Sum_probs=35.8
Q ss_pred ceEeccCCChHhHHHHHHHHhcccccCCCCChHHHHHHHHHHhC-CCchHHHH
Q 005367 120 RTFKVECLSDEAAWELFREKVGEETIESHHSIPELAQTVAKECG-GLPLALIT 171 (700)
Q Consensus 120 ~~~~l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g~Plai~~ 171 (700)
..+.+++++.++..+++.+.+...+.. -.++....+++.+. |.|..+..
T Consensus 252 ~~i~~~~~~~~e~~~il~~~~~~~~~~---~~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 252 LIVSTTPYSEKDTKQILRIRCEEEDVE---MSEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHTTCC---BCHHHHHHHHHHHHHSCHHHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHhcCCCHHHHHH
Confidence 358999999999999999887553322 23678888999887 76654433
No 188
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.38 E-value=0.0035 Score=61.07 Aligned_cols=147 Identities=14% Similarity=0.128 Sum_probs=78.2
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
++|+|||++|+++++.. .. ..+.++...-.+ .+ ...........+.........+|+
T Consensus 47 ~~GtGKT~la~~la~~~---~~---~~~~~~~~~~~~----------~~-------~~~~~~~~~~~~~~a~~~~~~vl~ 103 (262)
T 2qz4_A 47 PPGCGKTLLAKAVATEA---QV---PFLAMAGAEFVE----------VI-------GGLGAARVRSLFKEARARAPCIVY 103 (262)
T ss_dssp CTTSSHHHHHHHHHHHH---TC---CEEEEETTTTSS----------SS-------TTHHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCCCCHHHHHHHHHHHh---CC---CEEEechHHHHh----------hc-------cChhHHHHHHHHHHHHhcCCeEEE
Confidence 48999999999999986 22 233444332111 00 111111122222222234578999
Q ss_pred EcCCCchh-----------------hhhhhcC---cC--CCCcEEEEecCchhhhhc-c----cCcceEeccCCChHhHH
Q 005367 81 LDDLWERV-----------------DLKKIGV---PL--PKNSAVVFTTRFVDVCGR-M----EARRTFKVECLSDEAAW 133 (700)
Q Consensus 81 lDdv~~~~-----------------~~~~l~~---~~--~~gs~iiiTTr~~~~~~~-~----~~~~~~~l~~L~~~~a~ 133 (700)
||+++... .+..+.. .. +.+..||.||........ . .-...+.++..+.++-.
T Consensus 104 iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~ 183 (262)
T 2qz4_A 104 IDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERR 183 (262)
T ss_dssp EECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHH
T ss_pred EeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHH
Confidence 99997641 1112211 11 124566667765443221 1 12357889999999999
Q ss_pred HHHHHHhcccccCCCCChHHHHHHHHHHhCCCch-HHHHH
Q 005367 134 ELFREKVGEETIESHHSIPELAQTVAKECGGLPL-ALITI 172 (700)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 172 (700)
+++...+.... ...........+++.+.|.+- .|..+
T Consensus 184 ~il~~~~~~~~--~~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 184 EIFEQHLKSLK--LTQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp HHHHHHHHHTT--CCBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred HHHHHHHHhCC--CCcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 99988775433 122223345778888887653 44433
No 189
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.38 E-value=0.0043 Score=62.51 Aligned_cols=147 Identities=12% Similarity=0.089 Sum_probs=82.4
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTL-SKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~Ll 79 (700)
++|+|||+||++++... .+ ...+.++.++-.+ . -....+.....+.... ..+..+|
T Consensus 53 ppGtGKT~la~ala~~~---~~--~~~~~i~~~~l~~--------------~----~~g~~~~~~~~lf~~a~~~~~~vl 109 (322)
T 1xwi_A 53 PPGTGKSYLAKAVATEA---NN--STFFSISSSDLVS--------------K----WLGESEKLVKNLFQLARENKPSII 109 (322)
T ss_dssp SSSSCHHHHHHHHHHHT---TS--CEEEEEECCSSCC--------------S----SCCSCHHHHHHHHHHHHHTSSEEE
T ss_pred CCCccHHHHHHHHHHHc---CC--CcEEEEEhHHHHh--------------h----hhhHHHHHHHHHHHHHHhcCCcEE
Confidence 58999999999999885 11 1233444332110 0 0111223333333333 3567899
Q ss_pred EEcCCCchh-------------hhhhhcC---cC--CC-CcEEEEecCchhhhhc-c--cCcceEeccCCChHhHHHHHH
Q 005367 80 LLDDLWERV-------------DLKKIGV---PL--PK-NSAVVFTTRFVDVCGR-M--EARRTFKVECLSDEAAWELFR 137 (700)
Q Consensus 80 VlDdv~~~~-------------~~~~l~~---~~--~~-gs~iiiTTr~~~~~~~-~--~~~~~~~l~~L~~~~a~~l~~ 137 (700)
+||+++... ....+.. .+ .. +..||.||...+.... + +-...+.++..+.++-.+++.
T Consensus 110 ~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~ 189 (322)
T 1xwi_A 110 FIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFK 189 (322)
T ss_dssp EEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHH
T ss_pred EeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHH
Confidence 999997651 0111111 11 12 4455556654433211 1 224578899999999999998
Q ss_pred HHhcccccCCCCChHHHHHHHHHHhCCC-chHHHHHH
Q 005367 138 EKVGEETIESHHSIPELAQTVAKECGGL-PLALITIG 173 (700)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~~ 173 (700)
.++....... .++....|++.+.|. +-.|..+.
T Consensus 190 ~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 190 LHLGTTQNSL---TEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp HHHTTCCBCC---CHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred HHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 8775433111 256778899998886 44455554
No 190
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.30 E-value=0.0012 Score=65.32 Aligned_cols=166 Identities=18% Similarity=0.161 Sum_probs=88.7
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTL-SKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~Ll 79 (700)
++|+|||+||++++... .. ..+.+....- ... ...........+.... ..+..+|
T Consensus 59 ~~GtGKT~la~~la~~~---~~---~~~~v~~~~~--------------~~~----~~~~~~~~~~~~~~~~~~~~~~vl 114 (285)
T 3h4m_A 59 PPGTGKTLLAKAVATET---NA---TFIRVVGSEL--------------VKK----FIGEGASLVKDIFKLAKEKAPSII 114 (285)
T ss_dssp SSSSSHHHHHHHHHHHT---TC---EEEEEEGGGG--------------CCC----STTHHHHHHHHHHHHHHHTCSEEE
T ss_pred CCCCcHHHHHHHHHHHh---CC---CEEEEehHHH--------------HHh----ccchHHHHHHHHHHHHHHcCCeEE
Confidence 48999999999999886 22 2233332111 000 1112222333333332 3456899
Q ss_pred EEcCCCch----------------hhhhhhcCc-----CCCCcEEEEecCchhhhhc-c----cCcceEeccCCChHhHH
Q 005367 80 LLDDLWER----------------VDLKKIGVP-----LPKNSAVVFTTRFVDVCGR-M----EARRTFKVECLSDEAAW 133 (700)
Q Consensus 80 VlDdv~~~----------------~~~~~l~~~-----~~~gs~iiiTTr~~~~~~~-~----~~~~~~~l~~L~~~~a~ 133 (700)
+||+++.. ..+..+... ...+..||.||+..+.... . .-...+.++..+.++..
T Consensus 115 ~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~ 194 (285)
T 3h4m_A 115 FIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRL 194 (285)
T ss_dssp EEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHH
T ss_pred EEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHH
Confidence 99999653 112122111 1225667778875544321 1 12347899999999999
Q ss_pred HHHHHHhcccccCCCCChHHHHHHHHHHhCC-CchHHHHHHHH-----hccC---CChHHHHHHHHHHHh
Q 005367 134 ELFREKVGEETIESHHSIPELAQTVAKECGG-LPLALITIGRA-----MAYK---KTPEEWRYAIEVLRR 194 (700)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~~~~-----l~~~---~~~~~~~~~l~~~~~ 194 (700)
+++...+........ .....+++...| .|-.+..+... +... -+.+.....++....
T Consensus 195 ~il~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~~ 260 (285)
T 3h4m_A 195 EILKIHTRKMNLAED----VNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIME 260 (285)
T ss_dssp HHHHHHHTTSCBCTT----CCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCc----CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHh
Confidence 999888754432222 224566777766 45444443221 1111 255666666555543
No 191
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.004 Score=63.73 Aligned_cols=138 Identities=15% Similarity=0.144 Sum_probs=78.8
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTL-SKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~Ll 79 (700)
++|+|||.||++++... ... .+.|+.++-.+ . -.+..+..+..+...- ....++|
T Consensus 190 PPGTGKTllAkAiA~e~---~~~---f~~v~~s~l~s--------------k----~vGese~~vr~lF~~Ar~~aP~II 245 (405)
T 4b4t_J 190 PPGTGKTLLARAVAHHT---DCK---FIRVSGAELVQ--------------K----YIGEGSRMVRELFVMAREHAPSII 245 (405)
T ss_dssp CSSSSHHHHHHHHHHHH---TCE---EEEEEGGGGSC--------------S----STTHHHHHHHHHHHHHHHTCSEEE
T ss_pred CCCCCHHHHHHHHHHhh---CCC---ceEEEhHHhhc--------------c----ccchHHHHHHHHHHHHHHhCCceE
Confidence 68999999999999997 322 23343222110 0 1112223333333332 3568999
Q ss_pred EEcCCCchh------------h----hhhhc---CcCCC--CcEEEEecCchhhhhcc-----cCcceEeccCCChHhHH
Q 005367 80 LLDDLWERV------------D----LKKIG---VPLPK--NSAVVFTTRFVDVCGRM-----EARRTFKVECLSDEAAW 133 (700)
Q Consensus 80 VlDdv~~~~------------~----~~~l~---~~~~~--gs~iiiTTr~~~~~~~~-----~~~~~~~l~~L~~~~a~ 133 (700)
+||+++... . +..+. ..+.. +-.||.||..++..+.. +-+..++++.-+.++-.
T Consensus 246 FiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~ 325 (405)
T 4b4t_J 246 FMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARA 325 (405)
T ss_dssp EEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHH
T ss_pred eeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHH
Confidence 999997431 0 11111 12222 44566688766553221 23578999999999888
Q ss_pred HHHHHHhcccccCCCCChHHHHHHHHHHhCCCc
Q 005367 134 ELFREKVGEETIESHHSIPELAQTVAKECGGLP 166 (700)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 166 (700)
++|..+..........+ ...+++.+.|+-
T Consensus 326 ~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 326 EILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp HHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred HHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 99987775433222222 466778887754
No 192
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.24 E-value=0.0014 Score=67.21 Aligned_cols=96 Identities=11% Similarity=0.113 Sum_probs=61.4
Q ss_pred cCcEEEEEcCCCchh--hhhhh---cCcCCCCcEEEEecCchh-hhhcc-cCcceEeccCCChHhHHHHHHHHhcccccC
Q 005367 74 KKKFALLLDDLWERV--DLKKI---GVPLPKNSAVVFTTRFVD-VCGRM-EARRTFKVECLSDEAAWELFREKVGEETIE 146 (700)
Q Consensus 74 ~~r~LlVlDdv~~~~--~~~~l---~~~~~~gs~iiiTTr~~~-~~~~~-~~~~~~~l~~L~~~~a~~l~~~~~~~~~~~ 146 (700)
.++-++|+|+++... ....+ ....+...++|++|.... +...+ .....+++.+++.++..+.+...+...+..
T Consensus 132 ~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 211 (353)
T 1sxj_D 132 PPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVK 211 (353)
T ss_dssp CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCC
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCC
Confidence 356799999987542 22222 222344667777775433 21111 112478999999999999998877543322
Q ss_pred CCCChHHHHHHHHHHhCCCchHHHHH
Q 005367 147 SHHSIPELAQTVAKECGGLPLALITI 172 (700)
Q Consensus 147 ~~~~~~~~~~~i~~~~~g~Plai~~~ 172 (700)
-.++....|++.++|.|..+..+
T Consensus 212 ---i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 212 ---CDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp ---CCHHHHHHHHHHTSSCHHHHHHH
T ss_pred ---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 23788899999999998764443
No 193
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.21 E-value=0.0031 Score=63.64 Aligned_cols=146 Identities=14% Similarity=0.098 Sum_probs=82.6
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTL-SKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~Ll 79 (700)
++|+|||+||+++++.. ... .+.++.+ .+... .....+.....+.... ..+..+|
T Consensus 59 ppGtGKT~la~aia~~~---~~~---~~~v~~~----------~l~~~--------~~g~~~~~~~~~f~~a~~~~~~vl 114 (322)
T 3eie_A 59 PPGTGKSYLAKAVATEA---NST---FFSVSSS----------DLVSK--------WMGESEKLVKQLFAMARENKPSII 114 (322)
T ss_dssp SSSSCHHHHHHHHHHHH---TCE---EEEEEHH----------HHHTT--------TGGGHHHHHHHHHHHHHHTSSEEE
T ss_pred CCCCcHHHHHHHHHHHH---CCC---EEEEchH----------HHhhc--------ccchHHHHHHHHHHHHHhcCCeEE
Confidence 48999999999999986 222 2333321 11111 1122333344443333 3466899
Q ss_pred EEcCCCchhh-------------hhhhc---CcC---CCCcEEEEecCchhhhhc-c--cCcceEeccCCChHhHHHHHH
Q 005367 80 LLDDLWERVD-------------LKKIG---VPL---PKNSAVVFTTRFVDVCGR-M--EARRTFKVECLSDEAAWELFR 137 (700)
Q Consensus 80 VlDdv~~~~~-------------~~~l~---~~~---~~gs~iiiTTr~~~~~~~-~--~~~~~~~l~~L~~~~a~~l~~ 137 (700)
+||+++.... ...+. ..+ ..+..||.||+....... + +-...+.++..+.++-.+++.
T Consensus 115 ~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~ 194 (322)
T 3eie_A 115 FIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFE 194 (322)
T ss_dssp EEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHH
T ss_pred EechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHH
Confidence 9999975411 11111 111 224555557765443211 1 224578899999999999999
Q ss_pred HHhcccccCCCCChHHHHHHHHHHhCCC-chHHHHHH
Q 005367 138 EKVGEETIESHHSIPELAQTVAKECGGL-PLALITIG 173 (700)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~~ 173 (700)
.++...... ...+....+++.+.|. +-.|..+.
T Consensus 195 ~~~~~~~~~---~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 195 INVGDTPCV---LTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp HHHTTCCCC---CCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred HHhccCCCC---CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 887543311 1256778888888774 54555444
No 194
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.17 E-value=0.0037 Score=63.98 Aligned_cols=146 Identities=15% Similarity=0.111 Sum_probs=81.7
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTL-SKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~Ll 79 (700)
++|+|||+||++++... .. ..+.++.. .+.... ....+.....+.... ..+..+|
T Consensus 92 ppGtGKT~la~ala~~~---~~---~~~~v~~~----------~l~~~~--------~g~~~~~~~~~f~~a~~~~~~vl 147 (355)
T 2qp9_X 92 PPGTGKSYLAKAVATEA---NS---TFFSVSSS----------DLVSKW--------MGESEKLVKQLFAMARENKPSII 147 (355)
T ss_dssp STTSCHHHHHHHHHHHH---TC---EEEEEEHH----------HHHSCC-----------CHHHHHHHHHHHHHTSSEEE
T ss_pred CCCCcHHHHHHHHHHHh---CC---CEEEeeHH----------HHhhhh--------cchHHHHHHHHHHHHHHcCCeEE
Confidence 47999999999999987 22 22333321 111111 111122333333332 3577899
Q ss_pred EEcCCCchhh-------------hhhhcCc---C---CCCcEEEEecCchhhhh-cc--cCcceEeccCCChHhHHHHHH
Q 005367 80 LLDDLWERVD-------------LKKIGVP---L---PKNSAVVFTTRFVDVCG-RM--EARRTFKVECLSDEAAWELFR 137 (700)
Q Consensus 80 VlDdv~~~~~-------------~~~l~~~---~---~~gs~iiiTTr~~~~~~-~~--~~~~~~~l~~L~~~~a~~l~~ 137 (700)
+||+++.... ...+... + ..+..||.||...+... .+ +-...+.++..+.++-.+++.
T Consensus 148 ~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~ 227 (355)
T 2qp9_X 148 FIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFE 227 (355)
T ss_dssp EEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHH
T ss_pred EEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHH
Confidence 9999975420 1222111 1 22455555776543221 11 224678899999999999998
Q ss_pred HHhcccccCCCCChHHHHHHHHHHhCCC-chHHHHHH
Q 005367 138 EKVGEETIESHHSIPELAQTVAKECGGL-PLALITIG 173 (700)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~~ 173 (700)
.++....... .......|++.+.|. +-.|..+.
T Consensus 228 ~~l~~~~~~~---~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 228 INVGDTPSVL---TKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp HHHTTSCBCC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHhhCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 8875433111 256778899999874 54555544
No 195
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.08 E-value=0.0034 Score=64.35 Aligned_cols=98 Identities=10% Similarity=0.147 Sum_probs=61.7
Q ss_pred ccCcEEEEEcCCCchh-----hhhhhcCcCCCCcEEEEecCchh-hhhcc-cCcceEeccCCChHhHHHHHHHHhccccc
Q 005367 73 SKKKFALLLDDLWERV-----DLKKIGVPLPKNSAVVFTTRFVD-VCGRM-EARRTFKVECLSDEAAWELFREKVGEETI 145 (700)
Q Consensus 73 ~~~r~LlVlDdv~~~~-----~~~~l~~~~~~gs~iiiTTr~~~-~~~~~-~~~~~~~l~~L~~~~a~~l~~~~~~~~~~ 145 (700)
.+++-++|+|++.... .+.......+++..+|++|.+.. +...+ ..-..+++.+++.++..+.+.+.+...+.
T Consensus 132 ~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~ 211 (354)
T 1sxj_E 132 AHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI 211 (354)
T ss_dssp --CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC
Confidence 3466799999997642 12222223445778888776532 21212 12257899999999999999888754332
Q ss_pred CCCCCh-HHHHHHHHHHhCCCchHHHHHH
Q 005367 146 ESHHSI-PELAQTVAKECGGLPLALITIG 173 (700)
Q Consensus 146 ~~~~~~-~~~~~~i~~~~~g~Plai~~~~ 173 (700)
. -. ++.+..|++.++|.+..+..+.
T Consensus 212 ~---~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 212 Q---LETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp E---ECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred C---CCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 12 4677889999999886554443
No 196
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.04 E-value=0.0073 Score=63.82 Aligned_cols=148 Identities=14% Similarity=0.059 Sum_probs=79.9
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
++|+|||+||++++... .+ ...+.++.+.- ....... ........... .-..+..+|+
T Consensus 175 ppGtGKT~lA~aia~~~---~~--~~~~~v~~~~l----------~~~~~g~----~~~~~~~~f~~---a~~~~~~vl~ 232 (444)
T 2zan_A 175 PPGTGKSYLAKAVATEA---NN--STFFSISSSDL----------VSKWLGE----SEKLVKNLFQL---ARENKPSIIF 232 (444)
T ss_dssp STTSSHHHHHHHHHHHC---CS--SEEEEECCC-----------------------CCCTHHHHHHH---HHHSCSEEEE
T ss_pred CCCCCHHHHHHHHHHHc---CC--CCEEEEeHHHH----------Hhhhcch----HHHHHHHHHHH---HHHcCCeEEE
Confidence 58999999999999986 11 12233332211 1111000 11222222221 1134678999
Q ss_pred EcCCCchh-------------hhhhhcCcC------CCCcEEEEecCchhhhhc-c--cCcceEeccCCChHhHHHHHHH
Q 005367 81 LDDLWERV-------------DLKKIGVPL------PKNSAVVFTTRFVDVCGR-M--EARRTFKVECLSDEAAWELFRE 138 (700)
Q Consensus 81 lDdv~~~~-------------~~~~l~~~~------~~gs~iiiTTr~~~~~~~-~--~~~~~~~l~~L~~~~a~~l~~~ 138 (700)
||+++... ....+...+ +.+..||.||........ + +-...+.++..+.++-.+++..
T Consensus 233 iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~ 312 (444)
T 2zan_A 233 IDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRL 312 (444)
T ss_dssp ESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHH
T ss_pred EechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHH
Confidence 99997541 112222222 225566667765433211 1 2235788888888888889988
Q ss_pred HhcccccCCCCChHHHHHHHHHHhCCC-chHHHHHH
Q 005367 139 KVGEETIESHHSIPELAQTVAKECGGL-PLALITIG 173 (700)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~~ 173 (700)
++....... ..+....|++.+.|. +-.|..+.
T Consensus 313 ~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 313 HLGSTQNSL---TEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp HHTTSCEEC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 775433111 256778899999884 44555444
No 197
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.03 E-value=0.005 Score=63.10 Aligned_cols=147 Identities=12% Similarity=0.023 Sum_probs=81.5
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTL-SKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~Ll 79 (700)
++|+|||++|++++... .. ..+.++++.-.. . ...........+.... ..+..+|
T Consensus 125 ppGtGKT~la~aia~~~---~~---~~~~i~~~~l~~--------------~----~~g~~~~~~~~~~~~a~~~~~~vl 180 (357)
T 3d8b_A 125 PPGTGKTLIGKCIASQS---GA---TFFSISASSLTS--------------K----WVGEGEKMVRALFAVARCQQPAVI 180 (357)
T ss_dssp STTSSHHHHHHHHHHHT---TC---EEEEEEGGGGCC--------------S----STTHHHHHHHHHHHHHHHTCSEEE
T ss_pred CCCCCHHHHHHHHHHHc---CC---eEEEEehHHhhc--------------c----ccchHHHHHHHHHHHHHhcCCeEE
Confidence 47999999999999886 21 334455432111 0 0111222233333322 3467899
Q ss_pred EEcCCCch-------------hhhhhhcCc-------CCCCcEEEEecCchhhh-hcc--cCcceEeccCCChHhHHHHH
Q 005367 80 LLDDLWER-------------VDLKKIGVP-------LPKNSAVVFTTRFVDVC-GRM--EARRTFKVECLSDEAAWELF 136 (700)
Q Consensus 80 VlDdv~~~-------------~~~~~l~~~-------~~~gs~iiiTTr~~~~~-~~~--~~~~~~~l~~L~~~~a~~l~ 136 (700)
+||+++.. ..+..+... .+.+..||.||...... ..+ +-...+.++..+.++..+++
T Consensus 181 ~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il 260 (357)
T 3d8b_A 181 FIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIV 260 (357)
T ss_dssp EEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHH
T ss_pred EEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHH
Confidence 99999543 011122111 11244555567644321 111 12356789999999999988
Q ss_pred HHHhcccccCCCCChHHHHHHHHHHhCC-CchHHHHHHH
Q 005367 137 REKVGEETIESHHSIPELAQTVAKECGG-LPLALITIGR 174 (700)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~~~ 174 (700)
...+...... -.++....+++.+.| .+-.|..+..
T Consensus 261 ~~~~~~~~~~---l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 261 INLMSKEQCC---LSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp HHHHHTSCBC---CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHhhcCCC---ccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 8777443212 225778889999888 4555655543
No 198
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.01 E-value=0.012 Score=58.48 Aligned_cols=146 Identities=13% Similarity=0.076 Sum_probs=80.2
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTL-SKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~Ll 79 (700)
++|+|||++|++++... .. ..+.++.+.-.. . ...........+.... ..+..+|
T Consensus 62 p~GtGKT~la~~la~~~---~~---~~~~i~~~~l~~--------------~----~~~~~~~~~~~~~~~~~~~~~~vl 117 (297)
T 3b9p_A 62 PPGNGKTLLARAVATEC---SA---TFLNISAASLTS--------------K----YVGDGEKLVRALFAVARHMQPSII 117 (297)
T ss_dssp SSSSCHHHHHHHHHHHT---TC---EEEEEESTTTSS--------------S----SCSCHHHHHHHHHHHHHHTCSEEE
T ss_pred cCCCCHHHHHHHHHHHh---CC---CeEEeeHHHHhh--------------c----ccchHHHHHHHHHHHHHHcCCcEE
Confidence 48999999999999986 21 233444322110 0 1112233333333322 3467899
Q ss_pred EEcCCCchhh-------------hhhhc---CcCC-----CCcEEEEecCchhhhh-cc--cCcceEeccCCChHhHHHH
Q 005367 80 LLDDLWERVD-------------LKKIG---VPLP-----KNSAVVFTTRFVDVCG-RM--EARRTFKVECLSDEAAWEL 135 (700)
Q Consensus 80 VlDdv~~~~~-------------~~~l~---~~~~-----~gs~iiiTTr~~~~~~-~~--~~~~~~~l~~L~~~~a~~l 135 (700)
+||+++.... ...+. ..++ .+..||.||...+... .+ +-...+.++..+.++..++
T Consensus 118 ~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~i 197 (297)
T 3b9p_A 118 FIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELL 197 (297)
T ss_dssp EEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHH
T ss_pred EeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHH
Confidence 9999965410 00111 1111 1345666776543211 11 1235678888888888888
Q ss_pred HHHHhcccccCCCCChHHHHHHHHHHhCCCch-HHHHHH
Q 005367 136 FREKVGEETIESHHSIPELAQTVAKECGGLPL-ALITIG 173 (700)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~ 173 (700)
+...+..... .-..+....+++.+.|.+- ++..+.
T Consensus 198 l~~~~~~~~~---~~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 198 LNRLLQKQGS---PLDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp HHHHHGGGSC---CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 8877644321 1225677889999988875 554443
No 199
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.97 E-value=0.013 Score=60.89 Aligned_cols=146 Identities=11% Similarity=0.037 Sum_probs=78.6
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTL-SKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~Ll 79 (700)
.+|+|||++|++++... .. ..+.+++..-.+. . ..........+.... ..+..+|
T Consensus 156 ppGtGKT~la~aia~~~---~~---~~~~v~~~~l~~~----------~--------~g~~~~~~~~~~~~a~~~~~~il 211 (389)
T 3vfd_A 156 PPGNGKTMLAKAVAAES---NA---TFFNISAASLTSK----------Y--------VGEGEKLVRALFAVARELQPSII 211 (389)
T ss_dssp STTSCHHHHHHHHHHHT---TC---EEEEECSCCC-------------------------CHHHHHHHHHHHHHSSSEEE
T ss_pred CCCCCHHHHHHHHHHhh---cC---cEEEeeHHHhhcc----------c--------cchHHHHHHHHHHHHHhcCCeEE
Confidence 47999999999999886 21 2344443222110 0 011122223333322 2456899
Q ss_pred EEcCCCchh-------------hhhhhcCc-------CCCCcEEEEecCchhhhh-cc--cCcceEeccCCChHhHHHHH
Q 005367 80 LLDDLWERV-------------DLKKIGVP-------LPKNSAVVFTTRFVDVCG-RM--EARRTFKVECLSDEAAWELF 136 (700)
Q Consensus 80 VlDdv~~~~-------------~~~~l~~~-------~~~gs~iiiTTr~~~~~~-~~--~~~~~~~l~~L~~~~a~~l~ 136 (700)
+||+++... ....+... .+....||.||...+... .+ +-...+.++..+.++..+++
T Consensus 212 ~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il 291 (389)
T 3vfd_A 212 FIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLL 291 (389)
T ss_dssp EEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHH
T ss_pred EEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHH
Confidence 999996540 01111111 112345555665433221 11 12346889999999999999
Q ss_pred HHHhcccccCCCCChHHHHHHHHHHhCCCch-HHHHHH
Q 005367 137 REKVGEETIESHHSIPELAQTVAKECGGLPL-ALITIG 173 (700)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~ 173 (700)
...+..... .-.++....+++.+.|..- +|..+.
T Consensus 292 ~~~~~~~~~---~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 292 KNLLCKQGS---PLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp HHHHTTSCC---CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 887754331 2235677889998888653 554443
No 200
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.96 E-value=0.0039 Score=62.49 Aligned_cols=67 Identities=12% Similarity=0.133 Sum_probs=43.2
Q ss_pred CcEEEEEcCCCch-----------hhhhhhcC---cCCCCcEEEEecCchhh----------hhcccCcceEeccCCChH
Q 005367 75 KKFALLLDDLWER-----------VDLKKIGV---PLPKNSAVVFTTRFVDV----------CGRMEARRTFKVECLSDE 130 (700)
Q Consensus 75 ~r~LlVlDdv~~~-----------~~~~~l~~---~~~~gs~iiiTTr~~~~----------~~~~~~~~~~~l~~L~~~ 130 (700)
+..+|+||+++.. .....+.. ..+.+..||.||..... ..++ ...+++++++.+
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~ 207 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRI--AHHIEFPDYSDE 207 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHH
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHH
Confidence 4469999999733 22233322 23346778888764322 2221 367999999999
Q ss_pred hHHHHHHHHhccc
Q 005367 131 AAWELFREKVGEE 143 (700)
Q Consensus 131 ~a~~l~~~~~~~~ 143 (700)
+-.+++...+...
T Consensus 208 ~~~~il~~~l~~~ 220 (309)
T 3syl_A 208 ELFEIAGHMLDDQ 220 (309)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 9999998887543
No 201
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.95 E-value=0.0045 Score=62.54 Aligned_cols=146 Identities=13% Similarity=0.135 Sum_probs=78.5
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
++|+|||++|+++++.. . ..++.++++... .. .+...+..+.... ...+++.++|
T Consensus 56 ~~G~GKT~la~~la~~l---~---~~~~~i~~~~~~-~~-~i~~~~~~~~~~~-----------------~~~~~~~vli 110 (324)
T 3u61_B 56 SPGTGKTTVAKALCHDV---N---ADMMFVNGSDCK-ID-FVRGPLTNFASAA-----------------SFDGRQKVIV 110 (324)
T ss_dssp STTSSHHHHHHHHHHHT---T---EEEEEEETTTCC-HH-HHHTHHHHHHHBC-----------------CCSSCEEEEE
T ss_pred cCCCCHHHHHHHHHHHh---C---CCEEEEcccccC-HH-HHHHHHHHHHhhc-----------------ccCCCCeEEE
Confidence 47999999999999886 1 234555543321 21 1122111110000 0123678999
Q ss_pred EcCCCchh---hhhhhcC---cCCCCcEEEEecCchhhh-hcc-cCcceEeccCCChHhHHHH-------HHHHhccccc
Q 005367 81 LDDLWERV---DLKKIGV---PLPKNSAVVFTTRFVDVC-GRM-EARRTFKVECLSDEAAWEL-------FREKVGEETI 145 (700)
Q Consensus 81 lDdv~~~~---~~~~l~~---~~~~gs~iiiTTr~~~~~-~~~-~~~~~~~l~~L~~~~a~~l-------~~~~~~~~~~ 145 (700)
+|+++... ..+.+.. ..+.+.++|+||....-. ..+ ..-..+++++++.++-.++ +.+.+...+.
T Consensus 111 iDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~ 190 (324)
T 3u61_B 111 IDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGI 190 (324)
T ss_dssp EESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99998653 2333322 223477888888754321 111 1124789999998874333 3333322221
Q ss_pred CCCCChHHHHHHHHHHhCCCch-HHHHHH
Q 005367 146 ESHHSIPELAQTVAKECGGLPL-ALITIG 173 (700)
Q Consensus 146 ~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~ 173 (700)
..+ ..+....+++.++|.+. |++.+-
T Consensus 191 ~~~--~~~~~~~l~~~~~gd~R~a~~~L~ 217 (324)
T 3u61_B 191 AIA--DMKVVAALVKKNFPDFRKTIGELD 217 (324)
T ss_dssp CBS--CHHHHHHHHHHTCSCTTHHHHHHH
T ss_pred CCC--cHHHHHHHHHhCCCCHHHHHHHHH
Confidence 211 12788889999988665 444333
No 202
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.84 E-value=0.00069 Score=62.46 Aligned_cols=120 Identities=17% Similarity=0.200 Sum_probs=61.2
Q ss_pred CCCCcHHHHHHHHHhhcccCCC----CCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh--cc
Q 005367 1 MGGVGKTTLLTQINNKFVDNPT----DFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTL--SK 74 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~ 74 (700)
++|+|||++|+++++....... ....++++++.. +. .... ...........+.+.+ .+
T Consensus 51 ~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~---~~~~---~~~~~~~~~~~~~~~~~~~~ 114 (195)
T 1jbk_A 51 EPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA----------LV---AGAK---YRGEFEERLKGVLNDLAKQE 114 (195)
T ss_dssp CTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH----------HH---TTTC---SHHHHHHHHHHHHHHHHHST
T ss_pred CCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH----------Hh---ccCC---ccccHHHHHHHHHHHHhhcC
Confidence 4799999999999988622110 123445554311 11 0000 1122222333333322 35
Q ss_pred CcEEEEEcCCCchh---------h-hhhhcCcCC-CCcEEEEecCchhhhh------cc-cCcceEeccCCChHhHHHHH
Q 005367 75 KKFALLLDDLWERV---------D-LKKIGVPLP-KNSAVVFTTRFVDVCG------RM-EARRTFKVECLSDEAAWELF 136 (700)
Q Consensus 75 ~r~LlVlDdv~~~~---------~-~~~l~~~~~-~gs~iiiTTr~~~~~~------~~-~~~~~~~l~~L~~~~a~~l~ 136 (700)
++.+|||||++... + .+.+...+. .+..+|.||+...... .+ ..-..+.+++++.++..+++
T Consensus 115 ~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 115 GNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp TTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred CCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 67899999997652 1 112211111 2456777776544221 11 11225889999988876653
No 203
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.84 E-value=0.0062 Score=63.32 Aligned_cols=138 Identities=12% Similarity=0.162 Sum_probs=78.1
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTL-SKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~Ll 79 (700)
++|+|||.||++++... .. ..+.|+.++-.+ . -.+.....+..+...- ....++|
T Consensus 223 PPGtGKTllAkAiA~e~---~~---~~~~v~~s~l~s-----------------k-~~Gese~~ir~~F~~A~~~~P~Ii 278 (437)
T 4b4t_L 223 PPGTGKTLLAKAVAATI---GA---NFIFSPASGIVD-----------------K-YIGESARIIREMFAYAKEHEPCII 278 (437)
T ss_dssp CTTSSHHHHHHHHHHHH---TC---EEEEEEGGGTCC-----------------S-SSSHHHHHHHHHHHHHHHSCSEEE
T ss_pred CCCCcHHHHHHHHHHHh---CC---CEEEEehhhhcc-----------------c-cchHHHHHHHHHHHHHHhcCCcee
Confidence 68999999999999997 22 223343322110 0 1112222333333322 3578999
Q ss_pred EEcCCCchh----------------hhhhhc---CcCCC--CcEEEEecCchhhhhcc--c---CcceEeccCCChHhHH
Q 005367 80 LLDDLWERV----------------DLKKIG---VPLPK--NSAVVFTTRFVDVCGRM--E---ARRTFKVECLSDEAAW 133 (700)
Q Consensus 80 VlDdv~~~~----------------~~~~l~---~~~~~--gs~iiiTTr~~~~~~~~--~---~~~~~~l~~L~~~~a~ 133 (700)
+||+++... .+..++ ..+.. +-.||.||..++..+.. + -+..++++..+.++-.
T Consensus 279 fiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~ 358 (437)
T 4b4t_L 279 FMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRL 358 (437)
T ss_dssp EEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHH
T ss_pred eeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHH
Confidence 999997430 011121 11222 45677788776664332 2 2467889888888888
Q ss_pred HHHHHHhcccccCCCCChHHHHHHHHHHhCCCc
Q 005367 134 ELFREKVGEETIESHHSIPELAQTVAKECGGLP 166 (700)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 166 (700)
++|..+..........+ ...+++.+.|+-
T Consensus 359 ~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 359 EIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp HHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred HHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 88887775433222222 456777777754
No 204
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.80 E-value=0.0085 Score=62.20 Aligned_cols=137 Identities=17% Similarity=0.181 Sum_probs=77.4
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTL-SKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~Ll 79 (700)
++|+|||.||++++... .. ..+.|+.++-.+ . -.+..+..+..+...- ....++|
T Consensus 251 PPGTGKTlLAkAiA~e~---~~---~fi~vs~s~L~s--------------k----~vGesek~ir~lF~~Ar~~aP~II 306 (467)
T 4b4t_H 251 PPGTGKTLCARAVANRT---DA---TFIRVIGSELVQ--------------K----YVGEGARMVRELFEMARTKKACII 306 (467)
T ss_dssp CTTSSHHHHHHHHHHHH---TC---EEEEEEGGGGCC--------------C----SSSHHHHHHHHHHHHHHHTCSEEE
T ss_pred CCCCcHHHHHHHHHhcc---CC---CeEEEEhHHhhc--------------c----cCCHHHHHHHHHHHHHHhcCCceE
Confidence 58999999999999997 32 223333221100 0 1122222333333322 3578999
Q ss_pred EEcCCCchh----------------h----hhhhcCcCCC--CcEEEEecCchhhhhcc-----cCcceEeccCCChHhH
Q 005367 80 LLDDLWERV----------------D----LKKIGVPLPK--NSAVVFTTRFVDVCGRM-----EARRTFKVECLSDEAA 132 (700)
Q Consensus 80 VlDdv~~~~----------------~----~~~l~~~~~~--gs~iiiTTr~~~~~~~~-----~~~~~~~l~~L~~~~a 132 (700)
+||+++... . +..+ ..+.. +-.||.||..++..+.. +-+..++++..+.++-
T Consensus 307 fiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~l-Dg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R 385 (467)
T 4b4t_H 307 FFDEIDAVGGARFDDGAGGDNEVQRTMLELITQL-DGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGR 385 (467)
T ss_dssp EEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHH-HSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHH
T ss_pred eecccccccccccCcCCCccHHHHHHHHHHHHHh-hccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHH
Confidence 999997431 0 1111 12222 34456678765553221 2357889999898888
Q ss_pred HHHHHHHhcccccCCCCChHHHHHHHHHHhCCCc
Q 005367 133 WELFREKVGEETIESHHSIPELAQTVAKECGGLP 166 (700)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 166 (700)
.++|..++.......... ...|++.+.|+-
T Consensus 386 ~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 386 ANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp HHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred HHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 889987775433222222 456778887763
No 205
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.0053 Score=63.79 Aligned_cols=138 Identities=14% Similarity=0.116 Sum_probs=76.9
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTL-SKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~Ll 79 (700)
++|+|||.||++++... .. ..+.++.++-. .. -.+..+..+..+...- ....++|
T Consensus 223 PPGTGKTllAkAiA~e~---~~---~f~~v~~s~l~--------------~~----~vGese~~ir~lF~~A~~~aP~Ii 278 (434)
T 4b4t_M 223 PPGTGKTLLARACAAQT---NA---TFLKLAAPQLV--------------QM----YIGEGAKLVRDAFALAKEKAPTII 278 (434)
T ss_dssp CTTSSHHHHHHHHHHHH---TC---EEEEEEGGGGC--------------SS----CSSHHHHHHHHHHHHHHHHCSEEE
T ss_pred cCCCCHHHHHHHHHHHh---CC---CEEEEehhhhh--------------hc----ccchHHHHHHHHHHHHHhcCCeEE
Confidence 68999999999999997 22 22333322110 00 1122223333333322 3467999
Q ss_pred EEcCCCchh------------h----hhhhc---CcCCC--CcEEEEecCchhhhhcc-----cCcceEeccCCChHhHH
Q 005367 80 LLDDLWERV------------D----LKKIG---VPLPK--NSAVVFTTRFVDVCGRM-----EARRTFKVECLSDEAAW 133 (700)
Q Consensus 80 VlDdv~~~~------------~----~~~l~---~~~~~--gs~iiiTTr~~~~~~~~-----~~~~~~~l~~L~~~~a~ 133 (700)
+||+++... . +..++ ..+.. +-.||.||..++..+.. +-+..++++..+.++-.
T Consensus 279 fiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~ 358 (434)
T 4b4t_M 279 FIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRA 358 (434)
T ss_dssp EEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHH
T ss_pred eecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHH
Confidence 999986320 0 11111 22322 34566688776654332 12467899988888888
Q ss_pred HHHHHHhcccccCCCCChHHHHHHHHHHhCCCc
Q 005367 134 ELFREKVGEETIESHHSIPELAQTVAKECGGLP 166 (700)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 166 (700)
++|..+.........-+ ...+++.+.|+-
T Consensus 359 ~Il~~~~~~~~~~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 359 QILQIHSRKMTTDDDIN----WQELARSTDEFN 387 (434)
T ss_dssp HHHHHHHHHSCBCSCCC----HHHHHHHCSSCC
T ss_pred HHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 88877764433222222 456777777753
No 206
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.0058 Score=62.78 Aligned_cols=138 Identities=13% Similarity=0.107 Sum_probs=77.1
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTL-SKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~Ll 79 (700)
++|+|||.||++++... ... .+.++.++- ... -.+..+..+..+...- ....++|
T Consensus 224 PPGTGKTlLAkAiA~e~---~~~---fi~v~~s~l--------------~sk----~vGesek~ir~lF~~Ar~~aP~II 279 (437)
T 4b4t_I 224 APGTGKTLLAKAVANQT---SAT---FLRIVGSEL--------------IQK----YLGDGPRLCRQIFKVAGENAPSIV 279 (437)
T ss_dssp STTTTHHHHHHHHHHHH---TCE---EEEEESGGG--------------CCS----SSSHHHHHHHHHHHHHHHTCSEEE
T ss_pred CCCchHHHHHHHHHHHh---CCC---EEEEEHHHh--------------hhc----cCchHHHHHHHHHHHHHhcCCcEE
Confidence 68999999999999997 322 223332211 000 1222233333333332 3567999
Q ss_pred EEcCCCchh----------------hhhhhc---CcCCC--CcEEEEecCchhhhhcc--c---CcceEeccCCChHhHH
Q 005367 80 LLDDLWERV----------------DLKKIG---VPLPK--NSAVVFTTRFVDVCGRM--E---ARRTFKVECLSDEAAW 133 (700)
Q Consensus 80 VlDdv~~~~----------------~~~~l~---~~~~~--gs~iiiTTr~~~~~~~~--~---~~~~~~l~~L~~~~a~ 133 (700)
+||+++... .+..++ ..+.. +-.||.||..++..+.. + -+..++++.-+.++-.
T Consensus 280 fiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~ 359 (437)
T 4b4t_I 280 FIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKK 359 (437)
T ss_dssp EEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHH
T ss_pred EEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHH
Confidence 999986330 011111 12222 44566788776664332 1 2456889888888888
Q ss_pred HHHHHHhcccccCCCCChHHHHHHHHHHhCCCc
Q 005367 134 ELFREKVGEETIESHHSIPELAQTVAKECGGLP 166 (700)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 166 (700)
++|..++.........+ ...+++.+.|+-
T Consensus 360 ~Il~~~l~~~~l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 360 KILGIHTSKMNLSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp HHHHHHHTTSCBCSCCC----HHHHHHHCCSCC
T ss_pred HHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 88887775433222222 456777777753
No 207
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.75 E-value=0.01 Score=60.35 Aligned_cols=91 Identities=13% Similarity=0.136 Sum_probs=56.7
Q ss_pred CcEEEEEcCCCch--hh---hhhhcCcCCCCcEEEEecCchh-hhhccc-CcceEeccCCChHhHHHHHHHHhcccccCC
Q 005367 75 KKFALLLDDLWER--VD---LKKIGVPLPKNSAVVFTTRFVD-VCGRME-ARRTFKVECLSDEAAWELFREKVGEETIES 147 (700)
Q Consensus 75 ~r~LlVlDdv~~~--~~---~~~l~~~~~~gs~iiiTTr~~~-~~~~~~-~~~~~~l~~L~~~~a~~l~~~~~~~~~~~~ 147 (700)
++-++|+|+++.. .. +..+....+...++|++|.... +...+. .-..+++.+++.++..+.+.+.+.......
T Consensus 110 ~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i 189 (340)
T 1sxj_C 110 GFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKL 189 (340)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCB
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCC
Confidence 4679999998654 22 2222223445677777776432 111111 123688999999999888887764333222
Q ss_pred CCChHHHHHHHHHHhCCCchH
Q 005367 148 HHSIPELAQTVAKECGGLPLA 168 (700)
Q Consensus 148 ~~~~~~~~~~i~~~~~g~Pla 168 (700)
.++....+++.++|.+.-
T Consensus 190 ---~~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 190 ---SPNAEKALIELSNGDMRR 207 (340)
T ss_dssp ---CHHHHHHHHHHHTTCHHH
T ss_pred ---CHHHHHHHHHHcCCCHHH
Confidence 267788899999998764
No 208
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.72 E-value=0.013 Score=58.41 Aligned_cols=141 Identities=16% Similarity=0.171 Sum_probs=75.9
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
++|+|||+||++++... .. ..+.++ ..++.... ++. ... .....+.........+++
T Consensus 57 p~GtGKT~la~ala~~~---~~---~~i~v~------~~~l~~~~---~g~-----~~~---~~~~~f~~a~~~~p~il~ 113 (301)
T 3cf0_A 57 PPGCGKTLLAKAIANEC---QA---NFISIK------GPELLTMW---FGE-----SEA---NVREIFDKARQAAPCVLF 113 (301)
T ss_dssp SSSSSHHHHHHHHHHHT---TC---EEEEEC------HHHHHHHH---HTT-----CTT---HHHHHHHHHHHTCSEEEE
T ss_pred CCCcCHHHHHHHHHHHh---CC---CEEEEE------hHHHHhhh---cCc-----hHH---HHHHHHHHHHhcCCeEEE
Confidence 47999999999999986 21 223332 22222211 111 111 112222222235679999
Q ss_pred EcCCCchhh----------------hhhhcC---cCC--CCcEEEEecCchhhhhc-c----cCcceEeccCCChHhHHH
Q 005367 81 LDDLWERVD----------------LKKIGV---PLP--KNSAVVFTTRFVDVCGR-M----EARRTFKVECLSDEAAWE 134 (700)
Q Consensus 81 lDdv~~~~~----------------~~~l~~---~~~--~gs~iiiTTr~~~~~~~-~----~~~~~~~l~~L~~~~a~~ 134 (700)
||+++.... ...+.. .+. .+..||.||...+.... . .-...+.++..+.++-.+
T Consensus 114 iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~ 193 (301)
T 3cf0_A 114 FDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVA 193 (301)
T ss_dssp ECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHH
T ss_pred EEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHH
Confidence 999974310 111111 111 25567777765543321 1 123578999999999888
Q ss_pred HHHHHhcccccCCCCChHHHHHHHHHHhCCCchH
Q 005367 135 LFREKVGEETIESHHSIPELAQTVAKECGGLPLA 168 (700)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 168 (700)
++...+.......... ...+++.+.|.|-+
T Consensus 194 il~~~l~~~~~~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 194 ILKANLRKSPVAKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp HHHHHHTTSCBCSSCC----HHHHHHTCSSCCHH
T ss_pred HHHHHHccCCCCccch----HHHHHHHcCCCCHH
Confidence 8887775433222222 34566667777643
No 209
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.0045 Score=64.24 Aligned_cols=138 Identities=16% Similarity=0.182 Sum_probs=71.1
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTL-SKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~Ll 79 (700)
++|+|||.||++++... .. ..+.|+.++-.+ . -.+.....+..+...- ....+++
T Consensus 214 PPGtGKT~lakAiA~~~---~~---~~~~v~~~~l~~-----------------~-~~Ge~e~~ir~lF~~A~~~aP~Ii 269 (428)
T 4b4t_K 214 PPGTGKTMLVKAVANST---KA---AFIRVNGSEFVH-----------------K-YLGEGPRMVRDVFRLARENAPSII 269 (428)
T ss_dssp CTTTTHHHHHHHHHHHH---TC---EEEEEEGGGTCC-----------------S-SCSHHHHHHHHHHHHHHHTCSEEE
T ss_pred CCCCCHHHHHHHHHHHh---CC---CeEEEecchhhc-----------------c-ccchhHHHHHHHHHHHHHcCCCee
Confidence 68999999999999997 32 223344322110 0 1112222333333322 3567999
Q ss_pred EEcCCCchh------------h----hhhhc---CcCCC--CcEEEEecCchhhhhcc--c---CcceEeccCCChHhHH
Q 005367 80 LLDDLWERV------------D----LKKIG---VPLPK--NSAVVFTTRFVDVCGRM--E---ARRTFKVECLSDEAAW 133 (700)
Q Consensus 80 VlDdv~~~~------------~----~~~l~---~~~~~--gs~iiiTTr~~~~~~~~--~---~~~~~~l~~L~~~~a~ 133 (700)
+||+++... . +..++ ..+.. +-.||.||..++..+.. + -+..++++.+.+++++
T Consensus 270 fiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R 349 (428)
T 4b4t_K 270 FIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRER 349 (428)
T ss_dssp EEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHH
T ss_pred echhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHH
Confidence 999995320 0 11111 11222 44566788765543221 1 2356788777665554
Q ss_pred -HHHHHHhcccccCCCCChHHHHHHHHHHhCCCc
Q 005367 134 -ELFREKVGEETIESHHSIPELAQTVAKECGGLP 166 (700)
Q Consensus 134 -~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 166 (700)
++|..+..........+ ...+++.+.|+-
T Consensus 350 ~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 350 RLIFGTIASKMSLAPEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp HHHHHHHHHSSCBCTTCC----HHHHHHHTTTCC
T ss_pred HHHHHHHhcCCCCCcccC----HHHHHHHCCCCC
Confidence 45555543333222222 456777777753
No 210
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.59 E-value=0.0072 Score=60.12 Aligned_cols=119 Identities=13% Similarity=0.106 Sum_probs=71.1
Q ss_pred CCCCcHHHHHHHHHhhcccCC-CCCCEEEEEEeCC-ccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNP-TDFDYVIWVVVSK-DLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFA 78 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~-~~f~~~~wv~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~L 78 (700)
++|+|||++|+.+++....-. .+.+. .+++... .....+ .+.+.+.+.... ..+++-+
T Consensus 26 p~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~-ir~li~~~~~~p------------------~~~~~kv 85 (305)
T 2gno_A 26 EDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDD-IRTIKDFLNYSP------------------ELYTRKY 85 (305)
T ss_dssp SSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHH-HHHHHHHHTSCC------------------SSSSSEE
T ss_pred CCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHH-HHHHHHHHhhcc------------------ccCCceE
Confidence 479999999999987531111 23343 5555432 222222 233444443211 1246779
Q ss_pred EEEcCCCch--hhhhhhc---CcCCCCcEEEEecCch-hhhhcccCcceEeccCCChHhHHHHHHHHh
Q 005367 79 LLLDDLWER--VDLKKIG---VPLPKNSAVVFTTRFV-DVCGRMEARRTFKVECLSDEAAWELFREKV 140 (700)
Q Consensus 79 lVlDdv~~~--~~~~~l~---~~~~~gs~iiiTTr~~-~~~~~~~~~~~~~l~~L~~~~a~~l~~~~~ 140 (700)
+|+|+++.. ...+.+. .-.++...+|++|.+. .+...+... .+++.++++++..+.+.+..
T Consensus 86 viIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 86 VIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred EEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 999999765 2333332 2234467777666543 444444455 99999999999999998776
No 211
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.51 E-value=0.002 Score=60.05 Aligned_cols=88 Identities=26% Similarity=0.338 Sum_probs=47.2
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
++|+|||+||++++... ......++|+++. .+...+...+. .......... +.+. -+||
T Consensus 62 ~~GtGKT~la~~i~~~~---~~~~~~~~~~~~~------~~~~~~~~~~~-------~~~~~~~~~~----~~~~-~~li 120 (202)
T 2w58_A 62 SFGVGKTYLLAAIANEL---AKRNVSSLIVYVP------ELFRELKHSLQ-------DQTMNEKLDY----IKKV-PVLM 120 (202)
T ss_dssp STTSSHHHHHHHHHHHH---HTTTCCEEEEEHH------HHHHHHHHC----------CCCHHHHHH----HHHS-SEEE
T ss_pred CCCCCHHHHHHHHHHHH---HHcCCeEEEEEhH------HHHHHHHHHhc-------cchHHHHHHH----hcCC-CEEE
Confidence 47999999999999987 2333456666542 33444443331 1112333332 2222 3999
Q ss_pred EcCCCch--hhh--hhhcC-----cCCCCcEEEEecCc
Q 005367 81 LDDLWER--VDL--KKIGV-----PLPKNSAVVFTTRF 109 (700)
Q Consensus 81 lDdv~~~--~~~--~~l~~-----~~~~gs~iiiTTr~ 109 (700)
|||++.. ..| ..+.. ....+.++|+||+.
T Consensus 121 lDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 121 LDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp EEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred EcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 9999543 221 11111 12336778888873
No 212
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.32 E-value=0.013 Score=60.63 Aligned_cols=103 Identities=17% Similarity=0.228 Sum_probs=43.2
Q ss_pred CCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCcccccCC-cccccccccceeccccCcccccchh-hhcCCCC
Q 005367 346 IPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNETLRQLP-MGISKLVSLQLLDISYTRVRELPEE-LKALVNL 423 (700)
Q Consensus 346 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L 423 (700)
+..+..|+.+.+..+ ++.+....|.++.+|+.+.+..+ +..++ ..+..|.+|+.+.+..+.++.++.. +..|.+|
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 344444444444433 33444444444444544444332 22222 1234444455554444444433322 3444445
Q ss_pred CEEecccccCccccchhhhcCCCccceeec
Q 005367 424 RCLNLDWAGELVKVPQQLLSNFSRLRVLRM 453 (700)
Q Consensus 424 ~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l 453 (700)
+.+.+..+ +..++...+.+|.+|+.+.+
T Consensus 313 ~~i~lp~~--l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 313 SSVTLPTA--LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp CEEECCTT--CCEECTTTTTTCTTCCCCCC
T ss_pred CEEEcCcc--ccEEHHHHhhCCCCCCEEEE
Confidence 54444321 23333333444444444443
No 213
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.21 E-value=0.043 Score=53.09 Aligned_cols=143 Identities=14% Similarity=0.083 Sum_probs=72.6
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
++|+|||++|+.++... ... .+.++...-.+ .. ...........+.........+++
T Consensus 53 ~~GtGKT~la~~la~~~---~~~---~~~i~~~~~~~----------~~-------~~~~~~~~~~~~~~a~~~~~~il~ 109 (257)
T 1lv7_A 53 PPGTGKTLLAKAIAGEA---KVP---FFTISGSDFVE----------MF-------VGVGASRVRDMFEQAKKAAPCIIF 109 (257)
T ss_dssp CTTSCHHHHHHHHHHHH---TCC---EEEECSCSSTT----------SC-------CCCCHHHHHHHHHHHHTTCSEEEE
T ss_pred cCCCCHHHHHHHHHHHc---CCC---EEEEeHHHHHH----------Hh-------hhhhHHHHHHHHHHHHHcCCeeeh
Confidence 47999999999999886 222 23343221100 00 111112222222333334568999
Q ss_pred EcCCCchh----------------hhhhhcC---cC--CCCcEEEEecCchhhh-hcc----cCcceEeccCCChHhHHH
Q 005367 81 LDDLWERV----------------DLKKIGV---PL--PKNSAVVFTTRFVDVC-GRM----EARRTFKVECLSDEAAWE 134 (700)
Q Consensus 81 lDdv~~~~----------------~~~~l~~---~~--~~gs~iiiTTr~~~~~-~~~----~~~~~~~l~~L~~~~a~~ 134 (700)
+|+++... .+..+.. .+ ..+..||.||...+.. ... .-...+.++..+.++-.+
T Consensus 110 iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~ 189 (257)
T 1lv7_A 110 IDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQ 189 (257)
T ss_dssp ETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHH
T ss_pred hhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHH
Confidence 99984321 1111111 11 1245666677655432 211 123567888888888888
Q ss_pred HHHHHhcccccCCCCChHHHHHHHHHHhCC-CchHHH
Q 005367 135 LFREKVGEETIESHHSIPELAQTVAKECGG-LPLALI 170 (700)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~ 170 (700)
++..++........ .....+++...| .+--|.
T Consensus 190 il~~~~~~~~l~~~----~~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 190 ILKVHMRRVPLAPD----IDAAIIARGTPGFSGADLA 222 (257)
T ss_dssp HHHHHHTTSCBCTT----CCHHHHHHTCTTCCHHHHH
T ss_pred HHHHHHhcCCCCcc----ccHHHHHHHcCCCCHHHHH
Confidence 88776643322211 113456666777 554443
No 214
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.19 E-value=0.0076 Score=58.95 Aligned_cols=89 Identities=15% Similarity=0.154 Sum_probs=49.2
Q ss_pred cCcEEEEEcCCCchh-----------------hhhhhcCcCCC------CcEEEEecCchhhhh-cc----cCcceEecc
Q 005367 74 KKKFALLLDDLWERV-----------------DLKKIGVPLPK------NSAVVFTTRFVDVCG-RM----EARRTFKVE 125 (700)
Q Consensus 74 ~~r~LlVlDdv~~~~-----------------~~~~l~~~~~~------gs~iiiTTr~~~~~~-~~----~~~~~~~l~ 125 (700)
.+..+|+||+++... .+..+...+.. ...||.||...+... .. .....+.++
T Consensus 102 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~ 181 (268)
T 2r62_A 102 QAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVD 181 (268)
T ss_dssp SCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCC
T ss_pred cCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEec
Confidence 456899999996531 12223222211 245667776554321 11 123568899
Q ss_pred CCChHhHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCCc
Q 005367 126 CLSDEAAWELFREKVGEETIESHHSIPELAQTVAKECGGLP 166 (700)
Q Consensus 126 ~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 166 (700)
..+.++-.+++...+.......... ...+++.+.|.|
T Consensus 182 ~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~g~~ 218 (268)
T 2r62_A 182 KPDFNGRVEILKVHIKGVKLANDVN----LQEVAKLTAGLA 218 (268)
T ss_dssp CCCTTTHHHHHHHHTSSSCCCSSCC----TTTTTSSSCSSC
T ss_pred CcCHHHHHHHHHHHHhcCCCCCccC----HHHHHHHcCCCC
Confidence 9999999999987764332111111 233555566654
No 215
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.12 E-value=0.022 Score=63.88 Aligned_cols=139 Identities=14% Similarity=0.145 Sum_probs=76.9
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
++|+|||+||++++... .. ..+.|+.. ++.... .......+...+.........+|+
T Consensus 246 PPGTGKT~LAraiA~el---g~---~~~~v~~~----------~l~sk~-------~gese~~lr~lF~~A~~~~PsIIf 302 (806)
T 3cf2_A 246 PPGTGKTLIARAVANET---GA---FFFLINGP----------EIMSKL-------AGESESNLRKAFEEAEKNAPAIIF 302 (806)
T ss_dssp CTTSCHHHHHHHHHTTT---TC---EEEEEEHH----------HHHSSC-------TTHHHHHHHHHHHHHTTSCSEEEE
T ss_pred CCCCCHHHHHHHHHHHh---CC---eEEEEEhH----------Hhhccc-------chHHHHHHHHHHHHHHHcCCeEEE
Confidence 58999999999999987 32 23444421 111111 112222222333333346789999
Q ss_pred EcCCCchh--------h-----hhhhc---CcCCC--CcEEEEecCchhhhhc-c----cCcceEeccCCChHhHHHHHH
Q 005367 81 LDDLWERV--------D-----LKKIG---VPLPK--NSAVVFTTRFVDVCGR-M----EARRTFKVECLSDEAAWELFR 137 (700)
Q Consensus 81 lDdv~~~~--------~-----~~~l~---~~~~~--gs~iiiTTr~~~~~~~-~----~~~~~~~l~~L~~~~a~~l~~ 137 (700)
||+++... + +..+. ..+.. +-.||.||...+.... + .-...++++..+.++-.++|.
T Consensus 303 IDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~ 382 (806)
T 3cf2_A 303 IDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQ 382 (806)
T ss_dssp EESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHH
T ss_pred EehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHH
Confidence 99996541 0 11111 11222 3345567765554322 2 124578999888888888888
Q ss_pred HHhcccccCCCCChHHHHHHHHHHhCCCc
Q 005367 138 EKVGEETIESHHSIPELAQTVAKECGGLP 166 (700)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 166 (700)
.+.......... ....+++.+.|+-
T Consensus 383 ~~l~~~~~~~dv----dl~~lA~~T~Gfs 407 (806)
T 3cf2_A 383 IHTKNMKLADDV----DLEQVANETHGHV 407 (806)
T ss_dssp HTCSSSEECTTC----CHHHHHHHCCSCC
T ss_pred HHhcCCCCCccc----CHHHHHHhcCCCC
Confidence 776443322222 2456777777764
No 216
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.01 E-value=0.0027 Score=55.79 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=20.9
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeC
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVS 33 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~ 33 (700)
..|+|||+|++.++..... ..+ .+++++..
T Consensus 44 ~~G~GKTtL~~~i~~~~~~--~g~-~~~~~~~~ 73 (149)
T 2kjq_A 44 EEGAGKSHLLQAWVAQALE--AGK-NAAYIDAA 73 (149)
T ss_dssp SSTTTTCHHHHHHHHHHHT--TTC-CEEEEETT
T ss_pred CCCCCHHHHHHHHHHHHHh--cCC-cEEEEcHH
Confidence 4799999999999998732 122 35666643
No 217
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.94 E-value=0.0037 Score=57.01 Aligned_cols=89 Identities=17% Similarity=0.189 Sum_probs=46.8
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
++|+||||||+.++....... .+ .+++++ ..++...+...+.... .. ..... +. +.-+||
T Consensus 46 ~~G~GKTtL~~~i~~~~~~~~-g~-~~~~~~------~~~~~~~~~~~~~~~~----~~---~~~~~----~~-~~~lli 105 (180)
T 3ec2_A 46 SPGVGKTHLAVATLKAIYEKK-GI-RGYFFD------TKDLIFRLKHLMDEGK----DT---KFLKT----VL-NSPVLV 105 (180)
T ss_dssp SSSSSHHHHHHHHHHHHHHHS-CC-CCCEEE------HHHHHHHHHHHHHHTC----CS---HHHHH----HH-TCSEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHc-CC-eEEEEE------HHHHHHHHHHHhcCch----HH---HHHHH----hc-CCCEEE
Confidence 479999999999998862111 11 223333 3444444444442211 11 22222 22 456899
Q ss_pred EcCCCch--hh-----hhhhcC-cCCCCcEEEEecCc
Q 005367 81 LDDLWER--VD-----LKKIGV-PLPKNSAVVFTTRF 109 (700)
Q Consensus 81 lDdv~~~--~~-----~~~l~~-~~~~gs~iiiTTr~ 109 (700)
||++... .. +..+.. ....|..||+||..
T Consensus 106 lDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 106 LDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp EETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred EeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 9999732 11 222211 12247889999973
No 218
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.93 E-value=0.055 Score=57.15 Aligned_cols=139 Identities=12% Similarity=0.107 Sum_probs=76.0
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
++|+|||+||++++... ... .+.++.++-.. .+ ...........+.....+...+|+
T Consensus 57 ppGtGKT~Laraia~~~---~~~---f~~is~~~~~~----------~~-------~g~~~~~~r~lf~~A~~~~p~ILf 113 (476)
T 2ce7_A 57 PPGTGKTLLARAVAGEA---NVP---FFHISGSDFVE----------LF-------VGVGAARVRDLFAQAKAHAPCIVF 113 (476)
T ss_dssp CTTSSHHHHHHHHHHHH---TCC---EEEEEGGGTTT----------CC-------TTHHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCCCCHHHHHHHHHHHc---CCC---eeeCCHHHHHH----------HH-------hcccHHHHHHHHHHHHhcCCCEEE
Confidence 58999999999999986 222 23343322111 00 011112222233333445789999
Q ss_pred EcCCCch----------------hhhhhhcCc---CC--CCcEEEEecCchhhhhc-c-c---CcceEeccCCChHhHHH
Q 005367 81 LDDLWER----------------VDLKKIGVP---LP--KNSAVVFTTRFVDVCGR-M-E---ARRTFKVECLSDEAAWE 134 (700)
Q Consensus 81 lDdv~~~----------------~~~~~l~~~---~~--~gs~iiiTTr~~~~~~~-~-~---~~~~~~l~~L~~~~a~~ 134 (700)
||+++.. ..+..+... +. .+-.||.||...+.... . . -...+.++..+.++-.+
T Consensus 114 IDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~ 193 (476)
T 2ce7_A 114 IDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKK 193 (476)
T ss_dssp EETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHH
T ss_pred EechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHH
Confidence 9999653 012222211 22 25567777776655332 1 1 23478889888888888
Q ss_pred HHHHHhcccccCCCCChHHHHHHHHHHhCCCc
Q 005367 135 LFREKVGEETIESHHSIPELAQTVAKECGGLP 166 (700)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 166 (700)
++..++.......... ...+++...|..
T Consensus 194 Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 194 ILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp HHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred HHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 8877764433221211 345777787876
No 219
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.92 E-value=0.037 Score=58.91 Aligned_cols=144 Identities=15% Similarity=0.140 Sum_probs=76.2
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
.+|+|||++|+++++.. .. ..+.+++. .+...+ ...........+.....++..+|+
T Consensus 246 ppGtGKT~lAraia~~~---~~---~fv~vn~~----------~l~~~~-------~g~~~~~~~~~f~~A~~~~p~iLf 302 (489)
T 3hu3_A 246 PPGTGKTLIARAVANET---GA---FFFLINGP----------EIMSKL-------AGESESNLRKAFEEAEKNAPAIIF 302 (489)
T ss_dssp STTSSHHHHHHHHHHHC---SS---EEEEEEHH----------HHHTSC-------TTHHHHHHHHHHHHHHHTCSEEEE
T ss_pred cCCCCHHHHHHHHHHHh---CC---CEEEEEch----------Hhhhhh-------cchhHHHHHHHHHHHHhcCCcEEE
Confidence 47999999999998886 22 23444421 111111 111112222333333345678999
Q ss_pred EcCCCch----------------hhhhhhcCcCCC--CcEEEEecCchhh-hhcc----cCcceEeccCCChHhHHHHHH
Q 005367 81 LDDLWER----------------VDLKKIGVPLPK--NSAVVFTTRFVDV-CGRM----EARRTFKVECLSDEAAWELFR 137 (700)
Q Consensus 81 lDdv~~~----------------~~~~~l~~~~~~--gs~iiiTTr~~~~-~~~~----~~~~~~~l~~L~~~~a~~l~~ 137 (700)
||+++.. ..+-.+...... +..||.||...+. ...+ .....+.++..+.++-.+++.
T Consensus 303 LDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~ 382 (489)
T 3hu3_A 303 IDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQ 382 (489)
T ss_dssp EESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHH
T ss_pred ecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHH
Confidence 9999422 011111111222 4455556665432 1222 223468999999999999998
Q ss_pred HHhcccccCCCCChHHHHHHHHHHhCCC-chHHHH
Q 005367 138 EKVGEETIESHHSIPELAQTVAKECGGL-PLALIT 171 (700)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~ 171 (700)
.++.......... ..++++.+.|. +-.+..
T Consensus 383 ~~~~~~~l~~~~~----l~~la~~t~g~s~~dL~~ 413 (489)
T 3hu3_A 383 IHTKNMKLADDVD----LEQVANETHGHVGADLAA 413 (489)
T ss_dssp HHTTTSCBCTTCC----HHHHHHTCTTCCHHHHHH
T ss_pred HHHhcCCCcchhh----HHHHHHHccCCcHHHHHH
Confidence 8875433222222 34556666654 444433
No 220
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.74 E-value=0.11 Score=52.32 Aligned_cols=50 Identities=14% Similarity=0.195 Sum_probs=37.8
Q ss_pred ceEeccCCChHhHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCCchHHHHH
Q 005367 120 RTFKVECLSDEAAWELFREKVGEETIESHHSIPELAQTVAKECGGLPLALITI 172 (700)
Q Consensus 120 ~~~~l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 172 (700)
..+.+++.+.++-.+++.+.+..... ...++.+..|++.++|.|..+..+
T Consensus 173 l~~~Ld~~~~~~l~~iL~~~~~~~~~---~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 173 IILELDFYTVKELKEIIKRAASLMDV---EIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred ceeeCCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHhcCCChHHHHHH
Confidence 35789999999999999888743321 233688999999999999655433
No 221
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.51 E-value=0.0068 Score=55.24 Aligned_cols=105 Identities=18% Similarity=0.103 Sum_probs=54.8
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCC------CCCCCC-------ccHHHHHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLC------NDSWKN-------KSLEEKAQDI 68 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~------~~~~~~-------~~~~~~~~~l 68 (700)
.|.||||.|...+.+. -++--.+.++..-... ...-...+++.+... .-.+.. ..........
T Consensus 37 ~GkGKTTaA~GlalRA---~g~G~rV~~vQF~Kg~-~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l~~a 112 (196)
T 1g5t_A 37 NGKGKTTAAFGTAARA---VGHGKNVGVVQFIKGT-WPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVWQHG 112 (196)
T ss_dssp SSSCHHHHHHHHHHHH---HHTTCCEEEEESSCCS-SCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH---HHCCCeEEEEEeeCCC-CCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHHHHH
Confidence 5899999999999997 3333344444321110 111222334444200 000111 1122334445
Q ss_pred HHHhccCcE-EEEEcCCCch--------hhhhhhcCcCCCCcEEEEecCch
Q 005367 69 FKTLSKKKF-ALLLDDLWER--------VDLKKIGVPLPKNSAVVFTTRFV 110 (700)
Q Consensus 69 ~~~l~~~r~-LlVlDdv~~~--------~~~~~l~~~~~~gs~iiiTTr~~ 110 (700)
++.+...+| |||||++... +++-++...-+..-.||+|+|..
T Consensus 113 ~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 113 KRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 555655554 9999998432 33333333345588999999974
No 222
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.45 E-value=0.011 Score=54.19 Aligned_cols=118 Identities=11% Similarity=0.050 Sum_probs=56.5
Q ss_pred cCCCcceEEEccCCcccc-----cCCcccccccccceeccccCccc-----ccchhhhcCCCCCEEecccccCccc----
Q 005367 371 QSMPCLTVLKMSGNETLR-----QLPMGISKLVSLQLLDISYTRVR-----ELPEELKALVNLRCLNLDWAGELVK---- 436 (700)
Q Consensus 371 ~~~~~L~~L~L~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~---- 436 (700)
..-+.|+.|+|+++..++ .+.+.+..-..|+.|+|++|.+. .+.+.+..-+.|+.|+|++|.....
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 334445555555431222 12223334455666666666554 2334455556677777766643221
Q ss_pred cchhhhcCCCccceeeccccCc-ccccCcccchHHHHhcCCCcceEEEEEecch
Q 005367 437 VPQQLLSNFSRLRVLRMFATGL-ISFYSWHENVAEELLGLKYLEVLEITFRRFE 489 (700)
Q Consensus 437 ~p~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 489 (700)
+... +..-+.|++|++++|.. .............+..-+.|++|+++.+...
T Consensus 118 la~a-L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 118 LLRS-TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHH-TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHH-HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 1111 34445577777764322 1110011123444556677777777766543
No 223
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.26 E-value=0.17 Score=49.93 Aligned_cols=17 Identities=24% Similarity=0.196 Sum_probs=15.9
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+|||+||+++++..
T Consensus 44 ppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 44 GKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999999997
No 224
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.24 E-value=0.045 Score=54.59 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=16.2
Q ss_pred ceEeccCCChHhHHHHHHH
Q 005367 120 RTFKVECLSDEAAWELFRE 138 (700)
Q Consensus 120 ~~~~l~~L~~~~a~~l~~~ 138 (700)
..+.+++++.++..+++.+
T Consensus 195 ~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 195 IRVELTALSAADFERILTE 213 (310)
T ss_dssp EEEECCCCCHHHHHHHHHS
T ss_pred ceEEcCCcCHHHHHHHHHh
Confidence 4689999999998888874
No 225
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.12 E-value=0.022 Score=49.63 Aligned_cols=17 Identities=18% Similarity=0.085 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
.+|+|||++|+.+++..
T Consensus 32 ~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 32 APGTGRMTGARYLHQFG 48 (145)
T ss_dssp STTSSHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 37999999999999875
No 226
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.94 E-value=0.68 Score=52.47 Aligned_cols=124 Identities=17% Similarity=0.211 Sum_probs=69.3
Q ss_pred CCCCcHHHHHHHHHhhcccCCC---CCCEEEEE-EeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhcc-C
Q 005367 1 MGGVGKTTLLTQINNKFVDNPT---DFDYVIWV-VVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSK-K 75 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~---~f~~~~wv-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~ 75 (700)
.+|+|||++|+.+++......- .....+|. +...- +.. .......+...+.+...+.. +
T Consensus 215 ~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l-------------~~~---~~~~g~~e~~l~~~~~~~~~~~ 278 (758)
T 1r6b_X 215 ESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL-------------LAG---TKYRGDFEKRFKALLKQLEQDT 278 (758)
T ss_dssp CTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC----------------CC---CCCSSCHHHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH-------------hcc---ccccchHHHHHHHHHHHHHhcC
Confidence 4799999999999987621111 12333332 21110 000 01234455555555555543 5
Q ss_pred cEEEEEcCCCch----------hh-hhhhcCcCCC-CcEEEEecCchhhhhcc-------cCcceEeccCCChHhHHHHH
Q 005367 76 KFALLLDDLWER----------VD-LKKIGVPLPK-NSAVVFTTRFVDVCGRM-------EARRTFKVECLSDEAAWELF 136 (700)
Q Consensus 76 r~LlVlDdv~~~----------~~-~~~l~~~~~~-gs~iiiTTr~~~~~~~~-------~~~~~~~l~~L~~~~a~~l~ 136 (700)
+.+|+||+++.. .+ ...++..+.. +..+|.+|...+..... .....+.++..+.++..+++
T Consensus 279 ~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il 358 (758)
T 1r6b_X 279 NSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQII 358 (758)
T ss_dssp CEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHH
T ss_pred CeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHH
Confidence 789999999754 11 2334444444 45666666644422111 11236899999999998888
Q ss_pred HHHh
Q 005367 137 REKV 140 (700)
Q Consensus 137 ~~~~ 140 (700)
....
T Consensus 359 ~~l~ 362 (758)
T 1r6b_X 359 NGLK 362 (758)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7655
No 227
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.91 E-value=0.037 Score=55.26 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=21.5
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK 34 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~ 34 (700)
.+|+|||++|+.++... ...-...+.++++.
T Consensus 55 ~~GtGKt~la~~la~~~---~~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 55 PTGVGKTELAKTLAATL---FDTEEAMIRIDMTE 85 (311)
T ss_dssp CSSSSHHHHHHHHHHHH---HSCGGGEEEEEGGG
T ss_pred CCCcCHHHHHHHHHHHH---cCCCcceEEeeccc
Confidence 47999999999999986 22222355566544
No 228
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.79 E-value=0.0067 Score=57.03 Aligned_cols=103 Identities=13% Similarity=-0.035 Sum_probs=56.6
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcE-EEE
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKF-ALL 80 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~-LlV 80 (700)
.|.||||++..++++. ..+...++.+...... . ....++++++............+....+.+.+.+.++ +||
T Consensus 21 mGsGKTT~ll~~~~r~---~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvVi 94 (223)
T 2b8t_A 21 MFAGKTAELIRRLHRL---EYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVIG 94 (223)
T ss_dssp TTSCHHHHHHHHHHHH---HHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEEE
T ss_pred CCCcHHHHHHHHHHHH---HhcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEEE
Confidence 5999999999999998 2222233344322211 1 2234555555433222223344555555555544444 999
Q ss_pred EcCCCch--hhhhhhcCcCCCCcEEEEecCch
Q 005367 81 LDDLWER--VDLKKIGVPLPKNSAVVFTTRFV 110 (700)
Q Consensus 81 lDdv~~~--~~~~~l~~~~~~gs~iiiTTr~~ 110 (700)
+|.+... ++++.+......|-.||+|-++.
T Consensus 95 IDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 95 IDEVQFFDDRICEVANILAENGFVVIISGLDK 126 (223)
T ss_dssp ECSGGGSCTHHHHHHHHHHHTTCEEEEECCSB
T ss_pred EecCccCcHHHHHHHHHHHhCCCeEEEEeccc
Confidence 9998643 33333322112378899998853
No 229
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.78 E-value=0.072 Score=56.54 Aligned_cols=120 Identities=13% Similarity=0.132 Sum_probs=58.9
Q ss_pred CCCCcHHHHHHHHHhhcccCCC--C--CCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCc
Q 005367 1 MGGVGKTTLLTQINNKFVDNPT--D--FDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKK 76 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~--~--f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r 76 (700)
.+|+|||++|+.+++....... . -..++.++++ .... + ............+. ..++
T Consensus 209 ~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-------------~~~~--g--~~e~~~~~~~~~~~---~~~~ 268 (468)
T 3pxg_A 209 EPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------------TKYR--G--EFEDRLKKVMDEIR---QAGN 268 (468)
T ss_dssp CTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------------------CTTHHHHHHHHH---TCCC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-------------cccc--c--hHHHHHHHHHHHHH---hcCC
Confidence 4899999999999998622110 0 1123333332 0000 0 01112222222222 2467
Q ss_pred EEEEEcCCCchhhhhhhcCcCCCC-cEEEEecCchhhh------hcc-cCcceEeccCCChHhHHHHHHHHhcc
Q 005367 77 FALLLDDLWERVDLKKIGVPLPKN-SAVVFTTRFVDVC------GRM-EARRTFKVECLSDEAAWELFREKVGE 142 (700)
Q Consensus 77 ~LlVlDdv~~~~~~~~l~~~~~~g-s~iiiTTr~~~~~------~~~-~~~~~~~l~~L~~~~a~~l~~~~~~~ 142 (700)
.+|++| ...+....++..+..| .++|.+|...+.. ..+ ..-..+.++..+.++..+++...+..
T Consensus 269 ~iLfiD--~~~~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 269 IILFID--AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp CEEEEC--C--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred eEEEEe--CchhHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHH
Confidence 899999 2233333454445554 5566555544311 111 12246999999999999999877643
No 230
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.76 E-value=0.32 Score=47.37 Aligned_cols=117 Identities=14% Similarity=0.141 Sum_probs=65.0
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTL-SKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~Ll 79 (700)
++|+|||+||+.++... .- ..+.++..+-.+. ........+..+.+.. .....++
T Consensus 52 p~GtGKTtLakala~~~---~~---~~i~i~g~~l~~~------------------~~~~~~~~i~~vf~~a~~~~p~i~ 107 (274)
T 2x8a_A 52 PPGCGKTLLAKAVANES---GL---NFISVKGPELLNM------------------YVGESERAVRQVFQRAKNSAPCVI 107 (274)
T ss_dssp STTSCHHHHHHHHHHHT---TC---EEEEEETTTTCSS------------------TTHHHHHHHHHHHHHHHHTCSEEE
T ss_pred CCCCcHHHHHHHHHHHc---CC---CEEEEEcHHHHhh------------------hhhHHHHHHHHHHHHHHhcCCCeE
Confidence 58999999999999986 21 3455543221100 0111122223333332 2456899
Q ss_pred EEcCCCchhh-------------hhhhcCcC---CC--CcEEEEecCchhhhhcc-----cCcceEeccCCChHhHHHHH
Q 005367 80 LLDDLWERVD-------------LKKIGVPL---PK--NSAVVFTTRFVDVCGRM-----EARRTFKVECLSDEAAWELF 136 (700)
Q Consensus 80 VlDdv~~~~~-------------~~~l~~~~---~~--gs~iiiTTr~~~~~~~~-----~~~~~~~l~~L~~~~a~~l~ 136 (700)
++|+++.... ...+...+ .. ..-++.+|..+++.+.. +-+..+.++..+.++-.+++
T Consensus 108 ~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il 187 (274)
T 2x8a_A 108 FFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAIL 187 (274)
T ss_dssp EEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHH
T ss_pred eeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHH
Confidence 9999964310 11111111 11 34456677777764332 23567889999999888888
Q ss_pred HHHhc
Q 005367 137 REKVG 141 (700)
Q Consensus 137 ~~~~~ 141 (700)
.....
T Consensus 188 ~~~~~ 192 (274)
T 2x8a_A 188 KTITK 192 (274)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 87763
No 231
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.75 E-value=0.19 Score=53.05 Aligned_cols=89 Identities=11% Similarity=0.078 Sum_probs=53.3
Q ss_pred EEEEEcCCCch--hhhhhhcCcCCC--CcEEE-Ee---------cC----c----hhhhhcccCcceEeccCCChHhHHH
Q 005367 77 FALLLDDLWER--VDLKKIGVPLPK--NSAVV-FT---------TR----F----VDVCGRMEARRTFKVECLSDEAAWE 134 (700)
Q Consensus 77 ~LlVlDdv~~~--~~~~~l~~~~~~--gs~ii-iT---------Tr----~----~~~~~~~~~~~~~~l~~L~~~~a~~ 134 (700)
-++|+|+++.. +..+.+...+.. ...+| .| |. . +.+..++ ..+.+.+++.++..+
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~---~~~~~~~~~~~e~~~ 373 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRV---MIIRTMLYTPQEMKQ 373 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTE---EEEECCCCCHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCCEEEEecCCccccccccccccccccCChhHHhhc---ceeeCCCCCHHHHHH
Confidence 39999999765 334444333322 22344 34 22 1 0123333 347999999999999
Q ss_pred HHHHHhcccccCCCCChHHHHHHHHHHh-CCCchHHHH
Q 005367 135 LFREKVGEETIESHHSIPELAQTVAKEC-GGLPLALIT 171 (700)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~Plai~~ 171 (700)
.+...+...+.. -.++....|++.+ +|.|.....
T Consensus 374 iL~~~~~~~~~~---~~~~~~~~i~~~a~~g~~r~a~~ 408 (456)
T 2c9o_A 374 IIKIRAQTEGIN---ISEEALNHLGEIGTKTTLRYSVQ 408 (456)
T ss_dssp HHHHHHHHHTCC---BCHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHhCCC---CCHHHHHHHHHHccCCCHHHHHH
Confidence 998887433322 2267778888888 777754433
No 232
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.69 E-value=0.058 Score=62.11 Aligned_cols=146 Identities=14% Similarity=0.161 Sum_probs=70.0
Q ss_pred CCCCcHHHHHHHHHhhcccCCC----CCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhc--c
Q 005367 1 MGGVGKTTLLTQINNKFVDNPT----DFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLS--K 74 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~ 74 (700)
.+|+|||++|+.+++....... .-..+++++++.-.. +.. ...........+..... +
T Consensus 199 ~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------------g~~----~~g~~~~~l~~~~~~~~~~~ 262 (854)
T 1qvr_A 199 EPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------------GAK----YRGEFEERLKAVIQEVVQSQ 262 (854)
T ss_dssp CTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------------------------CHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc------------cCc----cchHHHHHHHHHHHHHHhcC
Confidence 4799999999999988622110 122344554322100 000 12234444444444443 3
Q ss_pred CcEEEEEcCCCchhh-------hh---hhcCcCCC-CcEEEEecCchhh-----hhcc-cCcceEeccCCChHhHHHHHH
Q 005367 75 KKFALLLDDLWERVD-------LK---KIGVPLPK-NSAVVFTTRFVDV-----CGRM-EARRTFKVECLSDEAAWELFR 137 (700)
Q Consensus 75 ~r~LlVlDdv~~~~~-------~~---~l~~~~~~-gs~iiiTTr~~~~-----~~~~-~~~~~~~l~~L~~~~a~~l~~ 137 (700)
++.+|+||+++.... ++ .++..+.. +..+|.+|..... ...+ .....+.+++++.++..+++.
T Consensus 263 ~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~ 342 (854)
T 1qvr_A 263 GEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILR 342 (854)
T ss_dssp SSEEEEECCC-------------------HHHHHTTCCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHH
T ss_pred CCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHH
Confidence 679999999976520 11 12222222 3445555543332 1111 122458999999999999887
Q ss_pred HHhcccc-cCCCCChHHHHHHHHHHh
Q 005367 138 EKVGEET-IESHHSIPELAQTVAKEC 162 (700)
Q Consensus 138 ~~~~~~~-~~~~~~~~~~~~~i~~~~ 162 (700)
....... .....-.++....+++.+
T Consensus 343 ~~~~~~~~~~~~~i~~~al~~~~~ls 368 (854)
T 1qvr_A 343 GLKEKYEVHHGVRISDSAIIAAATLS 368 (854)
T ss_dssp HHHHHHHHHTTCEECHHHHHHHHHHH
T ss_pred hhhhhhhhhcCCCCCHHHHHHHHHHH
Confidence 5542110 001111245566666665
No 233
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.67 E-value=0.49 Score=45.36 Aligned_cols=138 Identities=17% Similarity=0.158 Sum_probs=71.4
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhc-cCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLS-KKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~r~Ll 79 (700)
++|+|||+||+.++... . ...+.++.. .+.... ..........+.+... ....++
T Consensus 57 ~~G~GKTtl~~~i~~~~---~---~~~i~~~~~----------~~~~~~--------~~~~~~~i~~~~~~~~~~~~~i~ 112 (254)
T 1ixz_A 57 PPGVGKTHLARAVAGEA---R---VPFITASGS----------DFVEMF--------VGVGAARVRDLFETAKRHAPCIV 112 (254)
T ss_dssp CTTSSHHHHHHHHHHHT---T---CCEEEEEHH----------HHHHSC--------TTHHHHHHHHHHHHHTTSSSEEE
T ss_pred CCCCCHHHHHHHHHHHh---C---CCEEEeeHH----------HHHHHH--------hhHHHHHHHHHHHHHHhcCCeEE
Confidence 47999999999999886 2 223334321 111111 1111222333333332 356899
Q ss_pred EEcCCCchh----------------hhhhhcCc---CCC--CcEEEEecCchhhhhcc-----cCcceEeccCCChHhHH
Q 005367 80 LLDDLWERV----------------DLKKIGVP---LPK--NSAVVFTTRFVDVCGRM-----EARRTFKVECLSDEAAW 133 (700)
Q Consensus 80 VlDdv~~~~----------------~~~~l~~~---~~~--gs~iiiTTr~~~~~~~~-----~~~~~~~l~~L~~~~a~ 133 (700)
|+|+++... .+..+... ... ...++.||..+++.... .-...++++..+.++-.
T Consensus 113 ~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~ 192 (254)
T 1ixz_A 113 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGRE 192 (254)
T ss_dssp EEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHH
T ss_pred EehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHH
Confidence 999994321 01122111 111 23455567766654321 22457889999998888
Q ss_pred HHHHHHhcccccCCCCChHHHHHHHHHHhCCCc
Q 005367 134 ELFREKVGEETIESHHSIPELAQTVAKECGGLP 166 (700)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 166 (700)
+++...+........ .....+++.+.|.-
T Consensus 193 ~il~~~~~~~~~~~~----~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 193 QILRIHARGKPLAED----VDLALLAKRTPGFV 221 (254)
T ss_dssp HHHHHHHTTSCBCTT----CCHHHHHHTCTTCC
T ss_pred HHHHHHHcCCCCCcc----cCHHHHHHHcCCCC
Confidence 888766633221111 11345666666643
No 234
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.64 E-value=0.012 Score=58.18 Aligned_cols=62 Identities=18% Similarity=0.297 Sum_probs=40.5
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEe--CCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVV--SKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFA 78 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~L 78 (700)
++|+|||+||.+++... . ..+.|++. .+. +.. ...+.+.....+.+.+.+.+ +
T Consensus 131 pPGsGKTtLAlqlA~~~---G---~~VlyIs~~~eE~-------------v~~-----~~~~le~~l~~i~~~l~~~~-L 185 (331)
T 2vhj_A 131 KGNSGKTPLVHALGEAL---G---GKDKYATVRFGEP-------------LSG-----YNTDFNVFVDDIARAMLQHR-V 185 (331)
T ss_dssp SCSSSHHHHHHHHHHHH---H---TTSCCEEEEBSCS-------------STT-----CBCCHHHHHHHHHHHHHHCS-E
T ss_pred CCCCCHHHHHHHHHHhC---C---CCEEEEEecchhh-------------hhh-----hhcCHHHHHHHHHHHHhhCC-E
Confidence 58999999999998862 1 12345555 222 110 11445666777777777767 9
Q ss_pred EEEcCCCch
Q 005367 79 LLLDDLWER 87 (700)
Q Consensus 79 lVlDdv~~~ 87 (700)
+|+|++...
T Consensus 186 LVIDsI~aL 194 (331)
T 2vhj_A 186 IVIDSLKNV 194 (331)
T ss_dssp EEEECCTTT
T ss_pred EEEeccccc
Confidence 999998543
No 235
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.37 E-value=0.3 Score=47.62 Aligned_cols=138 Identities=17% Similarity=0.153 Sum_probs=71.3
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhc-cCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLS-KKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~r~Ll 79 (700)
++|+|||+||+.++... . ...+.++.. .+.... ..........+.+... ....++
T Consensus 81 p~GtGKTtl~~~i~~~~---~---~~~i~~~~~----------~~~~~~--------~~~~~~~i~~~~~~~~~~~~~i~ 136 (278)
T 1iy2_A 81 PPGVGKTHLARAVAGEA---R---VPFITASGS----------DFVEMF--------VGVGAARVRDLFETAKRHAPCIV 136 (278)
T ss_dssp CTTSSHHHHHHHHHHHT---T---CCEEEEEHH----------HHHHST--------TTHHHHHHHHHHHHHHTSCSEEE
T ss_pred CCcChHHHHHHHHHHHc---C---CCEEEecHH----------HHHHHH--------hhHHHHHHHHHHHHHHhcCCcEE
Confidence 47999999999999886 2 223444321 111111 0111122223333322 356899
Q ss_pred EEcCCCchh----------------hhhhhcCcCC---C--CcEEEEecCchhhhhc-----ccCcceEeccCCChHhHH
Q 005367 80 LLDDLWERV----------------DLKKIGVPLP---K--NSAVVFTTRFVDVCGR-----MEARRTFKVECLSDEAAW 133 (700)
Q Consensus 80 VlDdv~~~~----------------~~~~l~~~~~---~--gs~iiiTTr~~~~~~~-----~~~~~~~~l~~L~~~~a~ 133 (700)
|+|+++... .+..+...+. . ...++.||..+++... ..-...++++..+.++-.
T Consensus 137 ~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~ 216 (278)
T 1iy2_A 137 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGRE 216 (278)
T ss_dssp EEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHH
T ss_pred ehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHH
Confidence 999995320 1112211111 1 2344556666555322 123467899999998888
Q ss_pred HHHHHHhcccccCCCCChHHHHHHHHHHhCCCc
Q 005367 134 ELFREKVGEETIESHHSIPELAQTVAKECGGLP 166 (700)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 166 (700)
+++..++........ .....+++...|..
T Consensus 217 ~il~~~~~~~~~~~~----~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 217 QILRIHARGKPLAED----VDLALLAKRTPGFV 245 (278)
T ss_dssp HHHHHHHTTSCBCTT----CCHHHHHHTCTTCC
T ss_pred HHHHHHHccCCCCcc----cCHHHHHHHcCCCC
Confidence 888776633221111 12345666666654
No 236
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.33 E-value=0.045 Score=49.67 Aligned_cols=17 Identities=35% Similarity=0.505 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+|||++|+++++..
T Consensus 51 ~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 51 DPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CGGGCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999999886
No 237
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.19 E-value=0.077 Score=51.54 Aligned_cols=31 Identities=13% Similarity=0.054 Sum_probs=21.3
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK 34 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~ 34 (700)
.+|+|||++|+.+++.. ...-...+.++++.
T Consensus 37 ~~GtGKt~la~~i~~~~---~~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 37 ERGTGKELIASRLHYLS---SRWQGPFISLNCAA 67 (265)
T ss_dssp CTTSCHHHHHHHHHHTS---TTTTSCEEEEEGGG
T ss_pred CCCCcHHHHHHHHHHhc---CccCCCeEEEecCC
Confidence 37999999999999886 22222345566554
No 238
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.15 E-value=0.43 Score=50.63 Aligned_cols=135 Identities=16% Similarity=0.113 Sum_probs=72.5
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhcc----Cc
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSK----KK 76 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~r 76 (700)
++|+|||+||++++... . ...+.++.++-.. . ... .....+...++. ..
T Consensus 72 ppGtGKTtLaraIa~~~---~---~~~i~i~g~~~~~----------~--------~~g---~~~~~v~~lfq~a~~~~p 124 (499)
T 2dhr_A 72 PPGVGKTHLARAVAGEA---R---VPFITASGSDFVE----------M--------FVG---VGAARVRDLFETAKRHAP 124 (499)
T ss_dssp SSSSSHHHHHHHHHHHT---T---CCEEEEEGGGGTS----------S--------CTT---HHHHHHHHHTTTSSSSSS
T ss_pred CCCCCHHHHHHHHHHHh---C---CCEEEEehhHHHH----------h--------hhh---hHHHHHHHHHHHHHhcCC
Confidence 47999999999999886 2 2334454322110 0 001 111223333332 34
Q ss_pred EEEEEcCCCchh----------------hhhhhcC---cCCC--CcEEEEecCchhhhhc-c----cCcceEeccCCChH
Q 005367 77 FALLLDDLWERV----------------DLKKIGV---PLPK--NSAVVFTTRFVDVCGR-M----EARRTFKVECLSDE 130 (700)
Q Consensus 77 ~LlVlDdv~~~~----------------~~~~l~~---~~~~--gs~iiiTTr~~~~~~~-~----~~~~~~~l~~L~~~ 130 (700)
.++++|+++... .+..+.. .+.. +..++.||+.+++.+. . .....+.++..+.+
T Consensus 125 ~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~ 204 (499)
T 2dhr_A 125 CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVK 204 (499)
T ss_dssp CEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHH
T ss_pred CEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHH
Confidence 799999995321 1122211 1122 4456667777665432 1 22457899999988
Q ss_pred hHHHHHHHHhcccccCCCCChHHHHHHHHHHhCCCc
Q 005367 131 AAWELFREKVGEETIESHHSIPELAQTVAKECGGLP 166 (700)
Q Consensus 131 ~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 166 (700)
+-.+++..++....... +.....+++...|+.
T Consensus 205 ~R~~IL~~~~~~~~l~~----dv~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 205 GREQILRIHARGKPLAE----DVDLALLAKRTPGFV 236 (499)
T ss_dssp HHHHHHHHTTSSSCCCC----SSTTHHHHTTSCSCC
T ss_pred HHHHHHHHHHhcCCCCh----HHHHHHHHHhcCCCC
Confidence 88888877663322111 112445667776665
No 239
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.86 E-value=0.094 Score=59.57 Aligned_cols=114 Identities=17% Similarity=0.163 Sum_probs=60.2
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
++|+|||++|+++++.. ...-...+.++++.-.+.. ..........++. ....+|+
T Consensus 529 p~GtGKT~lA~ala~~l---~~~~~~~i~i~~s~~~~~~------------------~~~~~~l~~~~~~---~~~~vl~ 584 (758)
T 3pxi_A 529 PTGVGKTELARALAESI---FGDEESMIRIDMSEYMEKH------------------STSGGQLTEKVRR---KPYSVVL 584 (758)
T ss_dssp CTTSSHHHHHHHHHHHH---HSCTTCEEEEEGGGGCSSC------------------CCC---CHHHHHH---CSSSEEE
T ss_pred CCCCCHHHHHHHHHHHh---cCCCcceEEEechhccccc------------------ccccchhhHHHHh---CCCeEEE
Confidence 47999999999999986 2333445566654321100 0000111111111 2345899
Q ss_pred EcCCCchh--hhhhhcCc--------------CCCCcEEEEecCc-----------------hhhhhcccCcceEeccCC
Q 005367 81 LDDLWERV--DLKKIGVP--------------LPKNSAVVFTTRF-----------------VDVCGRMEARRTFKVECL 127 (700)
Q Consensus 81 lDdv~~~~--~~~~l~~~--------------~~~gs~iiiTTr~-----------------~~~~~~~~~~~~~~l~~L 127 (700)
||+++... ....+... ...+.+||.||.. +++..++ +..+.+.++
T Consensus 585 lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl--~~~i~~~~l 662 (758)
T 3pxi_A 585 LDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRI--DEIIVFHSL 662 (758)
T ss_dssp EECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTS--SEEEECC--
T ss_pred EeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhC--CeEEecCCC
Confidence 99997552 12221111 1125688888873 1111222 357889999
Q ss_pred ChHhHHHHHHHHh
Q 005367 128 SDEAAWELFREKV 140 (700)
Q Consensus 128 ~~~~a~~l~~~~~ 140 (700)
+.++-.+++...+
T Consensus 663 ~~~~~~~i~~~~l 675 (758)
T 3pxi_A 663 EKKHLTEIVSLMS 675 (758)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9988877776554
No 240
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.71 E-value=0.017 Score=57.56 Aligned_cols=17 Identities=29% Similarity=0.542 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
.+|+|||+||.++++..
T Consensus 160 ~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 160 DMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999999986
No 241
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.57 E-value=0.2 Score=50.16 Aligned_cols=85 Identities=18% Similarity=0.204 Sum_probs=49.0
Q ss_pred CCCCcHHHHHHHHHhhcccC---CCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCC-------CCCccHH---HHHHH
Q 005367 1 MGGVGKTTLLTQINNKFVDN---PTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDS-------WKNKSLE---EKAQD 67 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~~~~~---~~~~~ 67 (700)
.+|+|||+||.+++...... .+.-..++|++....++...+.. +++.++...+. ....+.+ +....
T Consensus 115 ~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~ 193 (324)
T 2z43_A 115 EFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTDHQIAIVDD 193 (324)
T ss_dssp STTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHH
T ss_pred CCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHHHHHHHHHH
Confidence 37999999999998875111 01135889999888777666553 45556442100 0111122 23444
Q ss_pred HHHHhc--cCcEEEEEcCCCc
Q 005367 68 IFKTLS--KKKFALLLDDLWE 86 (700)
Q Consensus 68 l~~~l~--~~r~LlVlDdv~~ 86 (700)
+...++ .+--+||+|.+..
T Consensus 194 l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 194 LQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHhccCCCEEEEeCcHH
Confidence 444443 3456888888743
No 242
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.48 E-value=0.11 Score=51.00 Aligned_cols=81 Identities=10% Similarity=0.077 Sum_probs=50.4
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCC---CCCccHHHH-HHHHHHH--hc-
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDS---WKNKSLEEK-AQDIFKT--LS- 73 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~-~~~l~~~--l~- 73 (700)
.+|+||||||.+++..... ...-..++||+..+..+.. .+++++...+. ....+.++. ...+... ++
T Consensus 36 ~pGsGKTtL~Lq~~~~~~~-~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~ 109 (333)
T 3io5_A 36 PSKSFKSNFGLTMVSSYMR-QYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIER 109 (333)
T ss_dssp SSSSSHHHHHHHHHHHHHH-HCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCT
T ss_pred CCCCCHHHHHHHHHHHHHh-cCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhc
Confidence 4799999999999887621 1113578999988888753 36777654321 022344444 3333222 33
Q ss_pred cCcEEEEEcCCCch
Q 005367 74 KKKFALLLDDLWER 87 (700)
Q Consensus 74 ~~r~LlVlDdv~~~ 87 (700)
++.-++|+|-+...
T Consensus 110 ~~~~lvVIDSI~aL 123 (333)
T 3io5_A 110 GEKVVVFIDSLGNL 123 (333)
T ss_dssp TCCEEEEEECSTTC
T ss_pred cCceEEEEeccccc
Confidence 45689999988544
No 243
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.48 E-value=0.18 Score=47.18 Aligned_cols=79 Identities=19% Similarity=0.138 Sum_probs=44.3
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCC----------CCCCCCccHHHHHHHHHH
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLC----------NDSWKNKSLEEKAQDIFK 70 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~----------~~~~~~~~~~~~~~~l~~ 70 (700)
.+|+||||||++++. . .-..++|++.....+...+.. +++.++.. .+.............++.
T Consensus 28 ~~GsGKTtl~~~l~~-~-----~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (220)
T 2cvh_A 28 PYASGKTTLALQTGL-L-----SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKK 100 (220)
T ss_dssp STTSSHHHHHHHHHH-H-----HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH-H-----cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHHHHHHHHH
Confidence 479999999999998 3 124788888776555544433 33333210 000111122334444444
Q ss_pred HhccCcEEEEEcCCCc
Q 005367 71 TLSKKKFALLLDDLWE 86 (700)
Q Consensus 71 ~l~~~r~LlVlDdv~~ 86 (700)
...++.-++|+|....
T Consensus 101 l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 101 TVDSNFALVVVDSITA 116 (220)
T ss_dssp HCCTTEEEEEEECCCC
T ss_pred HhhcCCCEEEEcCcHH
Confidence 4444467888998743
No 244
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=93.46 E-value=0.12 Score=52.23 Aligned_cols=79 Identities=14% Similarity=0.030 Sum_probs=50.5
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCC---CCCccHHHHHHHHHHHhc-cCc
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDS---WKNKSLEEKAQDIFKTLS-KKK 76 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~l~~~l~-~~r 76 (700)
.+|+||||||.+++.... ..-..++||+..+..+.. .+++++...+. ....+.++....+....+ .+.
T Consensus 69 ppGsGKSTLal~la~~~~---~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~ 140 (356)
T 3hr8_A 69 QESSGKTTLALHAIAEAQ---KMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVV 140 (356)
T ss_dssp STTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCC
T ss_pred CCCCCHHHHHHHHHHHHH---hcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCC
Confidence 479999999999998862 222357889887777654 55666543211 123455566665555544 345
Q ss_pred EEEEEcCCCch
Q 005367 77 FALLLDDLWER 87 (700)
Q Consensus 77 ~LlVlDdv~~~ 87 (700)
-++|+|.+...
T Consensus 141 dlvVIDSi~~l 151 (356)
T 3hr8_A 141 DLIVVDSVAAL 151 (356)
T ss_dssp SEEEEECTTTC
T ss_pred CeEEehHhhhh
Confidence 68899988544
No 245
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.46 E-value=0.35 Score=54.86 Aligned_cols=67 Identities=9% Similarity=0.078 Sum_probs=37.9
Q ss_pred cCcEEEEEcCCCchhhhhhhcCcCCC-CcEEEEecCchhhh------hcc-cCcceEeccCCChHhHHHHHHHHhcc
Q 005367 74 KKKFALLLDDLWERVDLKKIGVPLPK-NSAVVFTTRFVDVC------GRM-EARRTFKVECLSDEAAWELFREKVGE 142 (700)
Q Consensus 74 ~~r~LlVlDdv~~~~~~~~l~~~~~~-gs~iiiTTr~~~~~------~~~-~~~~~~~l~~L~~~~a~~l~~~~~~~ 142 (700)
.++.+|++| ...+....++..+.. ..++|.||...... ..+ ..-..+.++..+.++..+++......
T Consensus 266 ~~~~iLfiD--~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 266 AGNIILFID--AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp CCCCEEEEC--C--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred cCCEEEEEc--CchhHHHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 577899999 222333344444444 45666666544411 111 11246899999999999999876643
No 246
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.29 E-value=0.12 Score=43.91 Aligned_cols=53 Identities=23% Similarity=0.379 Sum_probs=32.5
Q ss_pred eeeecccccc--CCCCCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCCc
Q 005367 332 RLSLMKNSIK--NLPTIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGNE 385 (700)
Q Consensus 332 ~l~l~~~~~~--~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 385 (700)
.++-+++.++ .+|. .--++|+.|+|++|.++.+++..|..+++|++|+|++|+
T Consensus 12 ~v~Cs~~~L~~~~vP~-~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT-AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCS-CCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCC-CCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 3444455555 5552 112357777777777777777767777777777777774
No 247
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.27 E-value=0.66 Score=41.21 Aligned_cols=68 Identities=10% Similarity=0.027 Sum_probs=31.5
Q ss_pred HHHHh-ccCcEEEEEcCCCchhhhhhhcCcCCCCcEEEEecCchhh-hhcccCcceEeccCCChHhHHHHH
Q 005367 68 IFKTL-SKKKFALLLDDLWERVDLKKIGVPLPKNSAVVFTTRFVDV-CGRMEARRTFKVECLSDEAAWELF 136 (700)
Q Consensus 68 l~~~l-~~~r~LlVlDdv~~~~~~~~l~~~~~~gs~iiiTTr~~~~-~~~~~~~~~~~l~~L~~~~a~~l~ 136 (700)
+...+ ....-.+|+|++.+..+++.+...++....+|.-..+.++ .++.... .-...+.+.++..+.+
T Consensus 69 ~~~~l~~~~~~~vi~dg~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R-~~~~~~~~~~~~~~r~ 138 (179)
T 3lw7_A 69 CVEELGTSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIER-LRSDDSKEISELIRRD 138 (179)
T ss_dssp HHHHHCSCCCSCEEEECCCCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTC-C----CCCHHHHHHHH
T ss_pred HHHHHHhcCCCeEEEeCCCCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhc-cCCCCcchHHHHHHHH
Confidence 34444 2344568899996666666664444334444444333343 3333211 1112345555555444
No 248
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.26 E-value=0.23 Score=47.22 Aligned_cols=85 Identities=9% Similarity=0.085 Sum_probs=46.3
Q ss_pred CCCCcHHHHHHHHHhhcccC---CCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCC----C---CCCccHH---HHHHH
Q 005367 1 MGGVGKTTLLTQINNKFVDN---PTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCND----S---WKNKSLE---EKAQD 67 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~----~---~~~~~~~---~~~~~ 67 (700)
.+|+||||||++++...... ...-..++|++.........+ ..++++++...+ . ....+.. +....
T Consensus 32 ~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (243)
T 1n0w_A 32 EFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQ 110 (243)
T ss_dssp CTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCHHHHHHHHHH
Confidence 47999999999999863110 112468899987775555443 334455543210 0 0011122 22333
Q ss_pred HHHHhc-cCcEEEEEcCCCc
Q 005367 68 IFKTLS-KKKFALLLDDLWE 86 (700)
Q Consensus 68 l~~~l~-~~r~LlVlDdv~~ 86 (700)
+...+. .+.-++|+|.+..
T Consensus 111 ~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 111 ASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHhcCCceEEEEeCchH
Confidence 444443 3556888888743
No 249
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.26 E-value=0.12 Score=57.93 Aligned_cols=137 Identities=15% Similarity=0.211 Sum_probs=59.8
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTL-SKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~Ll 79 (700)
++|+|||.+|++++... .. -++.++. .+++... ...+ +..+..+.+.- +...++|
T Consensus 519 PPGtGKT~lAkaiA~e~---~~-----~f~~v~~--------~~l~s~~-------vGes-e~~vr~lF~~Ar~~~P~Ii 574 (806)
T 3cf2_A 519 PPGCGKTLLAKAIANEC---QA-----NFISIKG--------PELLTMW-------FGES-EANVREIFDKARQAAPCVL 574 (806)
T ss_dssp STTSSHHHHHHHHHHTT---TC-----EEEECCH--------HHHHTTT-------CSSC-HHHHHHHHHHHHTTCSEEE
T ss_pred CCCCCchHHHHHHHHHh---CC-----ceEEecc--------chhhccc-------cchH-HHHHHHHHHHHHHcCCcee
Confidence 58999999999999997 21 2222221 1233222 1222 33344444443 4578999
Q ss_pred EEcCCCchh----------------hhhhhc---CcCCC-CcEEEE-ecCchhhhhcc-----cCcceEeccCCChHhHH
Q 005367 80 LLDDLWERV----------------DLKKIG---VPLPK-NSAVVF-TTRFVDVCGRM-----EARRTFKVECLSDEAAW 133 (700)
Q Consensus 80 VlDdv~~~~----------------~~~~l~---~~~~~-gs~iii-TTr~~~~~~~~-----~~~~~~~l~~L~~~~a~ 133 (700)
+||+++... .+..++ ..+.. ...+|| ||..++..+.. +-+..+.++.-+.++-.
T Consensus 575 fiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~ 654 (806)
T 3cf2_A 575 FFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRV 654 (806)
T ss_dssp ECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHH
T ss_pred echhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHH
Confidence 999997431 011111 12222 333443 66655443221 23567888777666666
Q ss_pred HHHHHHhcccccCCCCChHHHHHHHHHHhCCC
Q 005367 134 ELFREKVGEETIESHHSIPELAQTVAKECGGL 165 (700)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 165 (700)
++|..+......... .....+++.+.|+
T Consensus 655 ~il~~~l~~~~~~~~----~dl~~la~~t~g~ 682 (806)
T 3cf2_A 655 AILKANLRKSPVAKD----VDLEFLAKMTNGF 682 (806)
T ss_dssp HTTTTTSSCC--CCC-----------------
T ss_pred HHHHHHhcCCCCCCC----CCHHHHHHhCCCC
Confidence 777655533222222 1234566666654
No 250
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.22 E-value=0.11 Score=44.01 Aligned_cols=14 Identities=14% Similarity=0.090 Sum_probs=5.4
Q ss_pred cceeccccCccccc
Q 005367 400 LQLLDISYTRVREL 413 (700)
Q Consensus 400 L~~L~l~~~~l~~l 413 (700)
|++|+|++|+|+.+
T Consensus 33 l~~L~Ls~N~l~~l 46 (130)
T 3rfe_A 33 TTELVLTGNNLTAL 46 (130)
T ss_dssp CSEEECTTSCCSSC
T ss_pred CCEEECCCCcCCcc
Confidence 33333333333333
No 251
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.21 E-value=0.16 Score=51.65 Aligned_cols=77 Identities=14% Similarity=0.075 Sum_probs=49.3
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCC---CCCccHHHHHHHHHHHhcc-Cc
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDS---WKNKSLEEKAQDIFKTLSK-KK 76 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~-~r 76 (700)
.+|+|||+||.+++.... ..-..++||+.....+.. .+++++...+. ....+.++....+....+. +-
T Consensus 82 ~pGsGKTtlal~la~~~~---~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~ 153 (366)
T 1xp8_A 82 PESGGKTTLALAIVAQAQ---KAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMELLVRSGAI 153 (366)
T ss_dssp STTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCC
T ss_pred CCCCChHHHHHHHHHHHH---HCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCC
Confidence 379999999999988762 223478999988876654 24555442110 0223456666666555543 34
Q ss_pred EEEEEcCCC
Q 005367 77 FALLLDDLW 85 (700)
Q Consensus 77 ~LlVlDdv~ 85 (700)
-+||+|.+.
T Consensus 154 ~lVVIDsl~ 162 (366)
T 1xp8_A 154 DVVVVDSVA 162 (366)
T ss_dssp SEEEEECTT
T ss_pred CEEEEeChH
Confidence 689999884
No 252
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.14 E-value=0.3 Score=49.32 Aligned_cols=50 Identities=12% Similarity=0.134 Sum_probs=33.8
Q ss_pred CCCCcHHHHHHHHHhhcccC---CCCCCEEEEEEeCCccCHHHHHHHHHHHcCC
Q 005367 1 MGGVGKTTLLTQINNKFVDN---PTDFDYVIWVVVSKDLQLEKIQETIRKKIGL 51 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~ 51 (700)
.+|+|||+||.+++...... .+.-..++||+....++...+.. +++.++.
T Consensus 130 ~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~ 182 (343)
T 1v5w_A 130 EFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNV 182 (343)
T ss_dssp CTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 37999999999999874111 11345889999888777665543 4455543
No 253
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=93.06 E-value=0.12 Score=51.23 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
.+|+|||++|+.+++..
T Consensus 33 e~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 33 DSGTGKELVARALHACS 49 (304)
T ss_dssp CTTSCHHHHHHHHHHHS
T ss_pred CCCchHHHHHHHHHHhC
Confidence 37999999999999875
No 254
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.98 E-value=0.11 Score=49.10 Aligned_cols=104 Identities=19% Similarity=0.183 Sum_probs=52.8
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCC---------------------CCc
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSW---------------------KNK 59 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~---------------------~~~ 59 (700)
.+|+|||||++.++..... .-..++|+.... ....+...+. .++...... ...
T Consensus 31 ~~GsGKTtl~~~l~~~~~~---~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (235)
T 2w0m_A 31 EPGTGKTIFSLHFIAKGLR---DGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKEDQWSLVNL 104 (235)
T ss_dssp STTSSHHHHHHHHHHHHHH---HTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----CTTBCSSC
T ss_pred CCCCCHHHHHHHHHHHHHH---CCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCceeeecCC
Confidence 4799999999999866521 123566776543 3333333332 333221100 112
Q ss_pred cHHHHHHHHHHHhcc-C--cEEEEEcCCCch-----hh----hhhhcCcCC-CCcEEEEecCch
Q 005367 60 SLEEKAQDIFKTLSK-K--KFALLLDDLWER-----VD----LKKIGVPLP-KNSAVVFTTRFV 110 (700)
Q Consensus 60 ~~~~~~~~l~~~l~~-~--r~LlVlDdv~~~-----~~----~~~l~~~~~-~gs~iiiTTr~~ 110 (700)
+..+....+...+.. + +.++|+|..... .. ++.+..... .|..||++|...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 105 TPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp CHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred CHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 455555555554432 3 349999988632 11 122211111 277888888643
No 255
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=92.76 E-value=0.16 Score=51.50 Aligned_cols=77 Identities=16% Similarity=0.081 Sum_probs=46.1
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCC---CCccHHHHHHHHHHHhc-cCc
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSW---KNKSLEEKAQDIFKTLS-KKK 76 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~l~~~l~-~~r 76 (700)
.+|+|||+||.+++.... ..-..++||+..+..+.. .+++++...+.. .....++....+....+ .+-
T Consensus 71 ~pGsGKTtLal~la~~~~---~~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~ 142 (356)
T 1u94_A 71 PESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 142 (356)
T ss_dssp STTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHH---HCCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCC
Confidence 379999999999988762 223468999988877643 245554321110 12234444444443332 344
Q ss_pred EEEEEcCCC
Q 005367 77 FALLLDDLW 85 (700)
Q Consensus 77 ~LlVlDdv~ 85 (700)
-+||+|.+.
T Consensus 143 ~lVVIDsl~ 151 (356)
T 1u94_A 143 DVIVVDSVA 151 (356)
T ss_dssp SEEEEECGG
T ss_pred CEEEEcCHH
Confidence 588999874
No 256
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.47 E-value=0.43 Score=54.26 Aligned_cols=119 Identities=13% Similarity=0.083 Sum_probs=63.7
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHH-HHHhccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDI-FKTLSKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~r~Ll 79 (700)
.+|+|||+||+.++... ... .+.++.. .+. .. ...........+ .....+...++
T Consensus 246 p~GtGKTtLarala~~l---~~~---~i~v~~~----------~l~---~~-----~~g~~~~~l~~vf~~a~~~~p~il 301 (806)
T 1ypw_A 246 PPGTGKTLIARAVANET---GAF---FFLINGP----------EIM---SK-----LAGESESNLRKAFEEAEKNAPAII 301 (806)
T ss_dssp CTTSSHHHHHHHHHHTT---TCE---EEEEEHH----------HHS---SS-----STTHHHHHHHHHHHHHHHHCSEEE
T ss_pred cCCCCHHHHHHHHHHHc---CCc---EEEEEch----------Hhh---hh-----hhhhHHHHHHHHHHHHHhcCCcEE
Confidence 47999999999999886 222 2444421 111 00 112222233333 33334567899
Q ss_pred EEcCCCchh----------------hhhhhcCcCCC--CcEEEEecCchhhhh-ccc----CcceEeccCCChHhHHHHH
Q 005367 80 LLDDLWERV----------------DLKKIGVPLPK--NSAVVFTTRFVDVCG-RME----ARRTFKVECLSDEAAWELF 136 (700)
Q Consensus 80 VlDdv~~~~----------------~~~~l~~~~~~--gs~iiiTTr~~~~~~-~~~----~~~~~~l~~L~~~~a~~l~ 136 (700)
++|+++... ++-.+...+.. +..+|.||...+-.. .+. -...+.+...+.++-.+++
T Consensus 302 ~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il 381 (806)
T 1ypw_A 302 FIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEIL 381 (806)
T ss_dssp EEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHH
T ss_pred EeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHH
Confidence 999994321 11111122222 455666666543322 111 1345788888999989988
Q ss_pred HHHhccc
Q 005367 137 REKVGEE 143 (700)
Q Consensus 137 ~~~~~~~ 143 (700)
...+...
T Consensus 382 ~~~~~~~ 388 (806)
T 1ypw_A 382 QIHTKNM 388 (806)
T ss_dssp HHTTTTS
T ss_pred HHHHhcC
Confidence 8776443
No 257
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=92.32 E-value=0.3 Score=52.82 Aligned_cols=37 Identities=11% Similarity=0.225 Sum_probs=24.6
Q ss_pred cEEEEecCchhh-----hhcccCcceEeccCCChHhHHHHHHHHh
Q 005367 101 SAVVFTTRFVDV-----CGRMEARRTFKVECLSDEAAWELFREKV 140 (700)
Q Consensus 101 s~iiiTTr~~~~-----~~~~~~~~~~~l~~L~~~~a~~l~~~~~ 140 (700)
..||.||+.... ..++ ..+++++++.++-.+++.++.
T Consensus 225 v~iI~ttN~~~~l~~aL~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 225 VLFIATANNLATIPGPLRDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp CEEEEECSSTTTSCHHHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred eEEEeccCccccCCHHHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 456667665332 2222 468999999998888887665
No 258
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.18 E-value=0.081 Score=48.34 Aligned_cols=86 Identities=16% Similarity=0.081 Sum_probs=39.2
Q ss_pred ccccceeccccC-ccc-----ccchhhhcCCCCCEEecccccCccc----cchhhhcCCCccceeeccccCcccccCccc
Q 005367 397 LVSLQLLDISYT-RVR-----ELPEELKALVNLRCLNLDWAGELVK----VPQQLLSNFSRLRVLRMFATGLISFYSWHE 466 (700)
Q Consensus 397 l~~L~~L~l~~~-~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~----~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 466 (700)
-+.|+.|+++++ .+. .+-+.+..-+.|+.|++++|..... +.. .+..-+.|++|+++.|.+... .-.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~-aL~~N~tL~~L~L~~N~Ig~~--Ga~ 116 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIE-LIETSPSLRVLNVESNFLTPE--LLA 116 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHH-HHHHCSSCCEEECCSSBCCHH--HHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHH-HHhcCCccCeEecCCCcCCHH--HHH
Confidence 345666666653 443 2333445555666666666533211 111 133345566666665554321 111
Q ss_pred chHHHHhcCCCcceEEEEE
Q 005367 467 NVAEELLGLKYLEVLEITF 485 (700)
Q Consensus 467 ~~~~~l~~l~~L~~L~l~~ 485 (700)
.....+..-+.|++|+|++
T Consensus 117 ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHHTTTTCCCSEEECCC
T ss_pred HHHHHHhhCCceeEEECCC
Confidence 2222333334455555543
No 259
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.69 E-value=0.095 Score=45.36 Aligned_cols=16 Identities=13% Similarity=0.021 Sum_probs=14.6
Q ss_pred CCCcHHHHHHHHHhhc
Q 005367 2 GGVGKTTLLTQINNKF 17 (700)
Q Consensus 2 gGiGKT~La~~~~~~~ 17 (700)
+|+|||++|+.+++..
T Consensus 36 ~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 36 AGSPFETVARYFHKNG 51 (143)
T ss_dssp TTCCHHHHHGGGCCTT
T ss_pred CCccHHHHHHHHHHhC
Confidence 7999999999998876
No 260
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=91.64 E-value=1.4 Score=44.24 Aligned_cols=99 Identities=10% Similarity=-0.044 Sum_probs=64.6
Q ss_pred ccCcEEEEEcCCCc-h--hhhhhh---cCcCCCCcEEEEecCc-------hhhhhccc-CcceEeccCCChHhHHHHHHH
Q 005367 73 SKKKFALLLDDLWE-R--VDLKKI---GVPLPKNSAVVFTTRF-------VDVCGRME-ARRTFKVECLSDEAAWELFRE 138 (700)
Q Consensus 73 ~~~r~LlVlDdv~~-~--~~~~~l---~~~~~~gs~iiiTTr~-------~~~~~~~~-~~~~~~l~~L~~~~a~~l~~~ 138 (700)
-+++-++|+|+++. . ...+.+ ....+++..+|++|.+ ..+.+.+. ....++..+++.++..+.+.+
T Consensus 74 f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~ 153 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAA 153 (343)
T ss_dssp CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHH
Confidence 35677889999865 2 333333 3334557777766543 23333332 235789999999999988888
Q ss_pred HhcccccCCCCChHHHHHHHHHHhCCCchHHHHHHH
Q 005367 139 KVGEETIESHHSIPELAQTVAKECGGLPLALITIGR 174 (700)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 174 (700)
.+...+...+ ++.+..+++.++|...++...-.
T Consensus 154 ~~~~~g~~i~---~~a~~~l~~~~~gdl~~~~~ele 186 (343)
T 1jr3_D 154 RAKQLNLELD---DAANQVLCYCYEGNLLALAQALE 186 (343)
T ss_dssp HHHHTTCEEC---HHHHHHHHHSSTTCHHHHHHHHH
T ss_pred HHHHcCCCCC---HHHHHHHHHHhchHHHHHHHHHH
Confidence 8754442333 68889999999998877655433
No 261
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.56 E-value=0.38 Score=45.19 Aligned_cols=49 Identities=22% Similarity=0.245 Sum_probs=29.5
Q ss_pred CCCCcHHHHHHHHHhhccc--CCC-CCCEEEEEEeCCccCHHHHHHHHHHHcC
Q 005367 1 MGGVGKTTLLTQINNKFVD--NPT-DFDYVIWVVVSKDLQLEKIQETIRKKIG 50 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~--~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~~~ 50 (700)
.+|+|||||++.++..... ... ....++|++......... +..+++.++
T Consensus 33 ~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~ 84 (231)
T 4a74_A 33 EFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRG 84 (231)
T ss_dssp STTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcC
Confidence 4799999999999874311 111 245688888655444332 344455443
No 262
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=91.47 E-value=0.32 Score=49.13 Aligned_cols=78 Identities=17% Similarity=0.102 Sum_probs=48.3
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCC---CCCccHHHHHHHHHHHhcc-Cc
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDS---WKNKSLEEKAQDIFKTLSK-KK 76 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~-~r 76 (700)
.+|+||||||.+++.... ..-..++|++.....+.. .+++++...+. ....+.++....+....++ +.
T Consensus 69 ~pGsGKTtLal~la~~~~---~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~ 140 (349)
T 2zr9_A 69 PESSGKTTVALHAVANAQ---AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAL 140 (349)
T ss_dssp STTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCC
T ss_pred CCCCCHHHHHHHHHHHHH---hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCC
Confidence 479999999999987762 223568899988776653 25555543211 0223455555555444433 45
Q ss_pred EEEEEcCCCc
Q 005367 77 FALLLDDLWE 86 (700)
Q Consensus 77 ~LlVlDdv~~ 86 (700)
-+||+|.+..
T Consensus 141 ~lIVIDsl~~ 150 (349)
T 2zr9_A 141 DIIVIDSVAA 150 (349)
T ss_dssp SEEEEECGGG
T ss_pred CEEEEcChHh
Confidence 6899998843
No 263
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.39 E-value=0.33 Score=48.61 Aligned_cols=50 Identities=16% Similarity=0.337 Sum_probs=33.4
Q ss_pred CCCCcHHHHHHHHHhhccc-----------CCCCC--CEEEEEEeCCccCHHHHHHHHHHHcCC
Q 005367 1 MGGVGKTTLLTQINNKFVD-----------NPTDF--DYVIWVVVSKDLQLEKIQETIRKKIGL 51 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~-----------~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~~~~ 51 (700)
.+|+|||++|.+++..... ..+.. ..++|++....++...+.. ++++++.
T Consensus 106 ~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~ 168 (322)
T 2i1q_A 106 VFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGI 168 (322)
T ss_dssp STTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 3799999999999876310 01111 5889999888877766654 3455543
No 264
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=90.68 E-value=0.42 Score=47.97 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=18.7
Q ss_pred eEeccCCChHhHHHHHHHHhcc
Q 005367 121 TFKVECLSDEAAWELFREKVGE 142 (700)
Q Consensus 121 ~~~l~~L~~~~a~~l~~~~~~~ 142 (700)
.+.++..+.++-.+++.+.+..
T Consensus 179 ~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 179 KIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp EEECCCCCHHHHHHHHHHHHCT
T ss_pred EEEcCCCCHHHHHHHHHhcccc
Confidence 5899999999999999888754
No 265
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=90.41 E-value=0.2 Score=56.86 Aligned_cols=28 Identities=25% Similarity=0.300 Sum_probs=20.5
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK 34 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~ 34 (700)
++|+|||++|+.+++.. . ...+.++++.
T Consensus 496 ~~GtGKT~la~~la~~l---~---~~~~~i~~s~ 523 (758)
T 1r6b_X 496 PTGVGKTEVTVQLSKAL---G---IELLRFDMSE 523 (758)
T ss_dssp STTSSHHHHHHHHHHHH---T---CEEEEEEGGG
T ss_pred CCCCcHHHHHHHHHHHh---c---CCEEEEechh
Confidence 47999999999999986 2 3445555443
No 266
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=89.76 E-value=0.63 Score=53.45 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=21.0
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK 34 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~ 34 (700)
++|+|||++|+.+++... ..-...+.++++.
T Consensus 596 p~GtGKT~lA~~la~~~~---~~~~~~i~i~~~~ 626 (854)
T 1qvr_A 596 PTGVGKTELAKTLAATLF---DTEEAMIRIDMTE 626 (854)
T ss_dssp CSSSSHHHHHHHHHHHHH---SSGGGEEEECTTT
T ss_pred CCCCCHHHHHHHHHHHhc---CCCCcEEEEechh
Confidence 479999999999998862 2223345555443
No 267
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=89.76 E-value=1 Score=44.71 Aligned_cols=43 Identities=14% Similarity=0.116 Sum_probs=30.7
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHH
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKK 48 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 48 (700)
.+|+|||++|.+++..... .-..++|++.. -+..++...+...
T Consensus 76 ~pG~GKTtl~l~ia~~~a~---~g~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 76 RPSMGKTAFALKQAKNMSD---NDDVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp CTTSSHHHHHHHHHHHHHT---TTCEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH---cCCeEEEEECC--CCHHHHHHHHHHH
Confidence 3899999999999988632 12688888865 4456666666554
No 268
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.02 E-value=0.27 Score=46.92 Aligned_cols=15 Identities=40% Similarity=0.395 Sum_probs=13.2
Q ss_pred CCCCcHHHHHHHHHh
Q 005367 1 MGGVGKTTLLTQINN 15 (700)
Q Consensus 1 ~gGiGKT~La~~~~~ 15 (700)
+.|+|||||++.++.
T Consensus 38 pnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 38 GTGTGKTTFAAQFIY 52 (251)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999883
No 269
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=87.62 E-value=0.85 Score=42.05 Aligned_cols=77 Identities=14% Similarity=0.104 Sum_probs=42.3
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc--------CHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL--------QLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTL 72 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~--------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l 72 (700)
++|+||||+|+.+++++ ....|+.++-. ......+.++.+-... ..+.....+...+
T Consensus 8 pPGsGKgTqa~~La~~~--------g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lv-------pd~iv~~lv~~~l 72 (206)
T 3sr0_A 8 PPGAGKGTQAKRLAKEK--------GFVHISTGDILREAVQKGTPLGKKAKEYMERGELV-------PDDLIIALIEEVF 72 (206)
T ss_dssp STTSSHHHHHHHHHHHH--------CCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCC-------CHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHH--------CCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcC-------CHHHHHHHHHHhh
Confidence 58999999999999998 33444432210 1112222233322221 1234556677777
Q ss_pred ccCcEEEEEcCCCch-hhhhhh
Q 005367 73 SKKKFALLLDDLWER-VDLKKI 93 (700)
Q Consensus 73 ~~~r~LlVlDdv~~~-~~~~~l 93 (700)
.+... +|||+.-.. .|.+.+
T Consensus 73 ~~~~~-~ilDGfPRt~~Qa~~l 93 (206)
T 3sr0_A 73 PKHGN-VIFDGFPRTVKQAEAL 93 (206)
T ss_dssp CSSSC-EEEESCCCSHHHHHHH
T ss_pred ccCCc-eEecCCchhHHHHHHH
Confidence 66554 688998433 444433
No 270
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=86.91 E-value=0.032 Score=50.84 Aligned_cols=36 Identities=8% Similarity=-0.014 Sum_probs=22.6
Q ss_pred cCcEEEEEcCCCch--hhhhhhcCcCCCCcEEEEecCc
Q 005367 74 KKKFALLLDDLWER--VDLKKIGVPLPKNSAVVFTTRF 109 (700)
Q Consensus 74 ~~r~LlVlDdv~~~--~~~~~l~~~~~~gs~iiiTTr~ 109 (700)
++.-+||+|.+... +.++.+......|..||+|.++
T Consensus 75 ~~~dvviIDE~Q~~~~~~~~~l~~l~~~~~~Vi~~Gl~ 112 (184)
T 2orw_A 75 EDTRGVFIDEVQFFNPSLFEVVKDLLDRGIDVFCAGLD 112 (184)
T ss_dssp TTEEEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEEES
T ss_pred CCCCEEEEECcccCCHHHHHHHHHHHHCCCCEEEEeec
Confidence 44569999998654 3333333223348889988874
No 271
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=86.88 E-value=1.3 Score=46.16 Aligned_cols=45 Identities=20% Similarity=0.342 Sum_probs=34.1
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc-CHHHHHHHHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIRKK 48 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~ 48 (700)
+|+|||+|+.+++.+.. +.+-+.++++-+++.. ...++.+.+.+.
T Consensus 162 ~G~GKT~L~~~i~~~~~--~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 162 AGVGKTVLIMELINNVA--KAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp TTSSHHHHHHHHHHHTT--TTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHhhH--hhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 69999999999998852 2344677788887766 477787887765
No 272
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=86.85 E-value=3.1 Score=37.87 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+.|+||||+|+.++...
T Consensus 37 ~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 37 VSGSGKTTIAHGVADET 53 (200)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 57999999999999876
No 273
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=86.50 E-value=0.15 Score=57.90 Aligned_cols=118 Identities=18% Similarity=0.247 Sum_probs=60.6
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHh-ccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTL-SKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~Ll 79 (700)
++|+|||+||++++... ...|- .++.++-. .. ..... ......+.+.. .....++
T Consensus 519 ppGtGKT~Lakala~~~---~~~~i---~v~~~~l~----------~~-------~~g~~-~~~i~~~f~~a~~~~p~vl 574 (806)
T 1ypw_A 519 PPGCGKTLLAKAIANEC---QANFI---SIKGPELL----------TM-------WFGES-EANVREIFDKARQAAPCVL 574 (806)
T ss_dssp CTTSSHHHHHHHHHHHH---TCCCC---CCCCSSST----------TC-------CTTTS-SHHHHHHHHHHHHHCSBCC
T ss_pred CCCCCHHHHHHHHHHHh---CCCEE---EEechHhh----------hh-------hcCcc-HHHHHHHHHHHHhcCCeEE
Confidence 58999999999999987 22221 11111100 00 00111 12222233222 2345788
Q ss_pred EEcCCCch----------------hhhhhhcCcCCC-----CcEEEEecCchhhhhc-c----cCcceEeccCCChHhHH
Q 005367 80 LLDDLWER----------------VDLKKIGVPLPK-----NSAVVFTTRFVDVCGR-M----EARRTFKVECLSDEAAW 133 (700)
Q Consensus 80 VlDdv~~~----------------~~~~~l~~~~~~-----gs~iiiTTr~~~~~~~-~----~~~~~~~l~~L~~~~a~ 133 (700)
+||+++.. ..+..+...+.. +..||.||...+.... + +-...+.++..+.++-.
T Consensus 575 ~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~ 654 (806)
T 1ypw_A 575 FFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRV 654 (806)
T ss_dssp CCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHH
T ss_pred EEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHH
Confidence 99998542 112333333322 3345556664443222 1 12356788888888888
Q ss_pred HHHHHHhcc
Q 005367 134 ELFREKVGE 142 (700)
Q Consensus 134 ~l~~~~~~~ 142 (700)
+++..+...
T Consensus 655 ~Il~~~l~~ 663 (806)
T 1ypw_A 655 AILKANLRK 663 (806)
T ss_dssp HHTTTTTSC
T ss_pred HHHHHHhcc
Confidence 888877643
No 274
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=86.43 E-value=1.5 Score=45.06 Aligned_cols=50 Identities=12% Similarity=0.123 Sum_probs=32.2
Q ss_pred CCCCcHHHHHHHHHhhccc---CCCCCCEEEEEEeCCccCHHHHHHHHHHHcCC
Q 005367 1 MGGVGKTTLLTQINNKFVD---NPTDFDYVIWVVVSKDLQLEKIQETIRKKIGL 51 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~ 51 (700)
.+|+|||||+.+++-.... ..+.-..++|++....+....+ ..++++++.
T Consensus 186 ~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl 238 (400)
T 3lda_A 186 EFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGL 238 (400)
T ss_dssp STTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTC
T ss_pred CCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCC
Confidence 4799999999987644311 1123467899987776655543 346666654
No 275
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=86.40 E-value=1.7 Score=40.35 Aligned_cols=17 Identities=35% Similarity=0.423 Sum_probs=16.0
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||.|+.+++++
T Consensus 37 pPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 37 GPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999999998
No 276
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=86.10 E-value=1.7 Score=39.80 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.++...
T Consensus 26 ~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 26 VSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp STTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999999886
No 277
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=86.03 E-value=1.1 Score=55.16 Aligned_cols=77 Identities=16% Similarity=0.081 Sum_probs=50.3
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCC---CCccHHHHHHHHHHHhc-cCc
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSW---KNKSLEEKAQDIFKTLS-KKK 76 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~l~~~l~-~~r 76 (700)
++|+|||+||.+++... ...-..+.|+++.+..+... ++.++..-+.. .....++....+++..+ .+-
T Consensus 1435 ppGtGKT~LA~ala~ea---~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~~ 1506 (2050)
T 3cmu_A 1435 PESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 1506 (2050)
T ss_dssp CTTSSHHHHHHHHHHHH---HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHH---HHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHHHHHhcCCC
Confidence 58999999999998886 33445678888888776655 44554221110 22233455555555544 356
Q ss_pred EEEEEcCCC
Q 005367 77 FALLLDDLW 85 (700)
Q Consensus 77 ~LlVlDdv~ 85 (700)
-+||+|.+.
T Consensus 1507 ~lVVIDsi~ 1515 (2050)
T 3cmu_A 1507 DVIVVDSVA 1515 (2050)
T ss_dssp SEEEESCGG
T ss_pred CEEEEcChh
Confidence 799999995
No 278
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=85.87 E-value=1.5 Score=46.74 Aligned_cols=44 Identities=14% Similarity=0.065 Sum_probs=30.5
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHH
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKK 48 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 48 (700)
.+|+|||++|.+++.+... ++-..++|++...+ ..++...++..
T Consensus 250 ~pG~GKT~lal~~a~~~a~--~~g~~vl~~s~E~s--~~~l~~r~~~~ 293 (503)
T 1q57_A 250 GSGMVMSTFVRQQALQWGT--AMGKKVGLAMLEES--VEETAEDLIGL 293 (503)
T ss_dssp SSCHHHHHHHHHHHHHHTT--TSCCCEEEEESSSC--HHHHHHHHHHH
T ss_pred cCCCCchHHHHHHHHHHHH--hcCCcEEEEeccCC--HHHHHHHHHHH
Confidence 3799999999999998721 12357888876553 55666665543
No 279
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=85.73 E-value=0.42 Score=48.27 Aligned_cols=85 Identities=20% Similarity=0.248 Sum_probs=42.2
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCCCCCCCCccHHHH----HHHHHHHh--c
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIRKKIGLCNDSWKNKSLEEK----AQDIFKTL--S 73 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~l~~~l--~ 73 (700)
.+|+|||+|++.+++........++++ ++-+++.. ...++.+.+-..+ .......+...... .-.+.+.+ +
T Consensus 182 ~sG~GKTtLl~~Iar~i~~~~~~v~~I-~~lIGER~~Ev~~~~~~~~~~v-V~atadep~~~r~~~a~~alt~AEyfrd~ 259 (422)
T 3ice_A 182 PPKAGKTMLLQNIAQSIAYNHPDCVLM-VLLIDERPEEVTEMQRLVKGEV-VASTFDEPASRHVQVAEMVIEKAKRLVEH 259 (422)
T ss_dssp CSSSSHHHHHHHHHHHHHHHCTTSEEE-EEEESSCHHHHHHHHTTCSSEE-EEECTTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCChhHHHHHHHHHHhhcCCCeeEE-EEEecCChHHHHHHHHHhCeEE-EEeCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 479999999999887652112344444 46666554 3444333321000 00111111111111 11122222 4
Q ss_pred cCcEEEEEcCCCch
Q 005367 74 KKKFALLLDDLWER 87 (700)
Q Consensus 74 ~~r~LlVlDdv~~~ 87 (700)
++.+|+++||+...
T Consensus 260 G~dVLil~DslTR~ 273 (422)
T 3ice_A 260 KKDVIILLDSITRL 273 (422)
T ss_dssp SCEEEEEEECHHHH
T ss_pred CCCEEEEEeCchHH
Confidence 78999999999655
No 280
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=85.68 E-value=1.7 Score=43.49 Aligned_cols=43 Identities=16% Similarity=0.121 Sum_probs=30.4
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHH
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKK 48 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 48 (700)
.+|+|||++|.+++..... .-..++|++... +..++...++..
T Consensus 54 ~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlEm--s~~ql~~Rlls~ 96 (338)
T 4a1f_A 54 RPSMGKTSLMMNMVLSALN---DDRGVAVFSLEM--SAEQLALRALSD 96 (338)
T ss_dssp CTTSCHHHHHHHHHHHHHH---TTCEEEEEESSS--CHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH---cCCeEEEEeCCC--CHHHHHHHHHHH
Confidence 3799999999999998732 345788887644 455666666544
No 281
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=85.64 E-value=1 Score=42.74 Aligned_cols=32 Identities=22% Similarity=0.117 Sum_probs=23.0
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCc
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD 35 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~ 35 (700)
.+|+||||||.+++.... ..-..++|++....
T Consensus 31 ~~GsGKTtl~~~~~~~~~---~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 31 GPGTGKTIFSQQFLWNGL---KMGEPGIYVALEEH 62 (247)
T ss_dssp CTTSSHHHHHHHHHHHHH---HTTCCEEEEESSSC
T ss_pred CCCCCHHHHHHHHHHHHH---hcCCeEEEEEccCC
Confidence 479999999999987752 22346788875543
No 282
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=85.60 E-value=0.51 Score=43.89 Aligned_cols=97 Identities=20% Similarity=0.148 Sum_probs=50.9
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCC------CC--CCCccHHHHHHHHHHHh
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCN------DS--WKNKSLEEKAQDIFKTL 72 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~------~~--~~~~~~~~~~~~l~~~l 72 (700)
.||+||||+|..++.... ...++ +..+.+..+...+.. .+...+.... .. ....+.+.. +
T Consensus 14 kgGvGKTt~a~~la~~l~--~~G~~-V~v~d~D~q~~~~~~--al~~gl~~~~~~~~~~~~~~~~e~~l~~~-------L 81 (228)
T 2r8r_A 14 APGVGKTYAMLQAAHAQL--RQGVR-VMAGVVETHGRAETE--ALLNGLPQQPLLRTEYRGMTLEEMDLDAL-------L 81 (228)
T ss_dssp STTSSHHHHHHHHHHHHH--HTTCC-EEEEECCCTTCHHHH--HHHTTSCBCCCEEEEETTEEEEECCHHHH-------H
T ss_pred CCCCcHHHHHHHHHHHHH--HCCCC-EEEEEeCCCCChhHH--HHhcCccccCcceeecCCcccccccHHHH-------H
Confidence 489999999999998872 22334 445555555554432 2333332110 00 001222222 2
Q ss_pred ccCcEEEEEcCCCch--------hhhhhhcCcCCCCcEEEEecCc
Q 005367 73 SKKKFALLLDDLWER--------VDLKKIGVPLPKNSAVVFTTRF 109 (700)
Q Consensus 73 ~~~r~LlVlDdv~~~--------~~~~~l~~~~~~gs~iiiTTr~ 109 (700)
..+.=++|+|+.-.. .-|..+...++.|..+++|+.-
T Consensus 82 ~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nl 126 (228)
T 2r8r_A 82 KAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNV 126 (228)
T ss_dssp HHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEG
T ss_pred hcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccc
Confidence 234559999976432 1244443344557788888763
No 283
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=85.41 E-value=0.93 Score=47.37 Aligned_cols=45 Identities=18% Similarity=0.278 Sum_probs=34.7
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc-CHHHHHHHHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIRKK 48 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~ 48 (700)
+|+|||+|+.+++++.. +.+-+.++++-+++.. ...++.+.+.+.
T Consensus 174 ~GvGKT~L~~~l~~~~a--~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 174 AGVGKTVLIMELINNIA--KAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp SSSSHHHHHHHHHHHTT--TTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred CCCCchHHHHHHHHHHH--hhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 69999999999999852 2345778888888776 477788887764
No 284
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=84.59 E-value=1.8 Score=42.37 Aligned_cols=81 Identities=16% Similarity=0.057 Sum_probs=43.1
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccC-HHHHHHHHHHHcCCCCC-CCCCccHHHHHHHHHHHhccCc-E
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQ-LEKIQETIRKKIGLCND-SWKNKSLEEKAQDIFKTLSKKK-F 77 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~r-~ 77 (700)
.+|+||||++..++.... ..-..+.+++...... ....+....+..+.+.- .....+..+......+.++.++ =
T Consensus 106 ~~G~GKTT~~~~la~~~~---~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~~~~D 182 (297)
T 1j8m_F 106 VQGTGKTTTAGKLAYFYK---KKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKME 182 (297)
T ss_dssp SSCSSTTHHHHHHHHHHH---HTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHHTTCS
T ss_pred CCCCCHHHHHHHHHHHHH---HCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHhCCCC
Confidence 479999999999998872 2223456666543332 22334445555544311 0112344444444444443233 3
Q ss_pred EEEEcCC
Q 005367 78 ALLLDDL 84 (700)
Q Consensus 78 LlVlDdv 84 (700)
++|+|-.
T Consensus 183 ~ViIDTp 189 (297)
T 1j8m_F 183 IIIVDTA 189 (297)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 7888854
No 285
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=84.52 E-value=0.4 Score=42.98 Aligned_cols=17 Identities=12% Similarity=0.282 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|++++++.
T Consensus 11 ~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 11 GSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CTTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 58999999999999986
No 286
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=84.27 E-value=0.71 Score=42.71 Aligned_cols=37 Identities=19% Similarity=0.174 Sum_probs=27.2
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQ 42 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 42 (700)
||+||||+|..++.... ..- .+.-|+.....+.....
T Consensus 10 GGvGKTT~a~~LA~~la---~~g-~VlliD~D~q~~~~~~~ 46 (209)
T 3cwq_A 10 GGVGKTTTAVHLSAYLA---LQG-ETLLIDGDPNRSATGWG 46 (209)
T ss_dssp TTSSHHHHHHHHHHHHH---TTS-CEEEEEECTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHH---hcC-CEEEEECCCCCCHHHHh
Confidence 89999999999998883 223 67788877665554433
No 287
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=84.10 E-value=1.6 Score=45.59 Aligned_cols=33 Identities=21% Similarity=0.161 Sum_probs=24.7
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL 36 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~ 36 (700)
.+|+|||++|.+++.+.... -..++|++...+.
T Consensus 205 ~pG~GKTtlal~ia~~~a~~---g~~vl~fSlEms~ 237 (444)
T 3bgw_A 205 RPSMGKTAFALKQAKNMSDN---DDVVNLHSLEMGK 237 (444)
T ss_dssp CSSSSHHHHHHHHHHHHHHT---TCEEEEECSSSCT
T ss_pred CCCCChHHHHHHHHHHHHHc---CCEEEEEECCCCH
Confidence 38999999999999987322 3578888765543
No 288
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=83.89 E-value=2.4 Score=41.58 Aligned_cols=77 Identities=14% Similarity=0.088 Sum_probs=40.6
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCc-cCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD-LQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~Ll 79 (700)
.+|+||||++..++...... .-..+..+..... ....+.+....+..+.+.. ...+..++...+. .+ ++.=++
T Consensus 113 ~~GsGKTTl~~~LA~~l~~~--~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~--~~~~~~~l~~al~-~~-~~~dlv 186 (296)
T 2px0_A 113 STGAGKTTTLAKLAAISMLE--KHKKIAFITTDTYRIAAVEQLKTYAELLQAPLE--VCYTKEEFQQAKE-LF-SEYDHV 186 (296)
T ss_dssp STTSSHHHHHHHHHHHHHHT--TCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCC--BCSSHHHHHHHHH-HG-GGSSEE
T ss_pred CCCCCHHHHHHHHHHHHHHh--cCCEEEEEecCcccchHHHHHHHHHHhcCCCeE--ecCCHHHHHHHHH-Hh-cCCCEE
Confidence 47999999999999887211 1234555654332 2334444555555544321 1122334433333 33 344578
Q ss_pred EEcC
Q 005367 80 LLDD 83 (700)
Q Consensus 80 VlDd 83 (700)
|+|-
T Consensus 187 IiDT 190 (296)
T 2px0_A 187 FVDT 190 (296)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8883
No 289
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=83.82 E-value=1.1 Score=46.70 Aligned_cols=45 Identities=16% Similarity=0.283 Sum_probs=28.8
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc-CHHHHHHHHHH
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIRK 47 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~ 47 (700)
.+|+|||+||..++..... ...+..+++.++++. ...++...+.+
T Consensus 159 ~sGvGKTtL~~~l~~~~~~--~~~~i~V~~~iGerttev~el~~~l~~ 204 (473)
T 1sky_E 159 GAGVGKTVLIQELIHNIAQ--EHGGISVFAGVGERTREGNDLYHEMKD 204 (473)
T ss_dssp CSSSCHHHHHHHHHHHHHH--HTCCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHhhhhh--ccCcEEEEeeeccCchHHHHHHHHhhh
Confidence 3799999999999887511 122445666666655 35555555543
No 290
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=83.59 E-value=1.7 Score=39.29 Aligned_cols=17 Identities=35% Similarity=0.409 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.+++..
T Consensus 17 ~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 17 GPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 57999999999999886
No 291
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=82.42 E-value=1.8 Score=42.64 Aligned_cols=81 Identities=16% Similarity=0.181 Sum_probs=41.6
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCCCC-CCCCccHHHH-HHHHHHHhccCcE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIRKKIGLCND-SWKNKSLEEK-AQDIFKTLSKKKF 77 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~-~~~~~~~~~~-~~~l~~~l~~~r~ 77 (700)
.+|+||||++..++..... .-..+.++...... ...+.+...++..+.+.- .....+.... ...+...+..+.-
T Consensus 112 ~~GsGKTTl~~~LA~~l~~---~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a~~~~~d 188 (306)
T 1vma_A 112 VNGTGKTTSCGKLAKMFVD---EGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALARNKD 188 (306)
T ss_dssp CTTSSHHHHHHHHHHHHHH---TTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHHHTTCS
T ss_pred CCCChHHHHHHHHHHHHHh---cCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHHHhcCCC
Confidence 4799999999999988722 22345555543321 122233445555543211 1112222222 2334444444555
Q ss_pred EEEEcCC
Q 005367 78 ALLLDDL 84 (700)
Q Consensus 78 LlVlDdv 84 (700)
++|+|-.
T Consensus 189 vvIiDtp 195 (306)
T 1vma_A 189 VVIIDTA 195 (306)
T ss_dssp EEEEEEC
T ss_pred EEEEECC
Confidence 8888855
No 292
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=82.38 E-value=0.68 Score=42.54 Aligned_cols=36 Identities=25% Similarity=0.298 Sum_probs=25.9
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEK 40 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 40 (700)
||+||||+|..++..... .-..+.-|+.....+...
T Consensus 11 gG~GKTt~a~~la~~la~---~g~~vlliD~D~~~~~~~ 46 (206)
T 4dzz_A 11 GGSGKTTAVINIATALSR---SGYNIAVVDTDPQMSLTN 46 (206)
T ss_dssp TTSSHHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHH
T ss_pred CCccHHHHHHHHHHHHHH---CCCeEEEEECCCCCCHHH
Confidence 899999999999988732 334577777765544443
No 293
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=81.95 E-value=2.8 Score=42.16 Aligned_cols=86 Identities=19% Similarity=0.201 Sum_probs=45.9
Q ss_pred CCCCcHHHHHHHHHhhccc--CCCC-CCEEEEEEeCCccCHHHHHHHHHHHcCCCC----------CCCCCccHHHHHHH
Q 005367 1 MGGVGKTTLLTQINNKFVD--NPTD-FDYVIWVVVSKDLQLEKIQETIRKKIGLCN----------DSWKNKSLEEKAQD 67 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~--~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~----------~~~~~~~~~~~~~~ 67 (700)
.+|+|||||+..++..... ..+. -..++||+..+.+.... +..+++.++... +........+....
T Consensus 139 ~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~-i~~i~q~~~~~~~~v~~ni~~~~~~~~~~~~~~l~~ 217 (349)
T 1pzn_A 139 EFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQ 217 (349)
T ss_dssp STTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH-HHHHHHTTTCCHHHHGGGEEEEECCSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH-HHHHHHHcCCCHHHHhhCEEEEecCChHHHHHHHHH
Confidence 4799999999999887511 1111 13558998766544333 344555543221 00011112233334
Q ss_pred HHHHhc------cCcEEEEEcCCCch
Q 005367 68 IFKTLS------KKKFALLLDDLWER 87 (700)
Q Consensus 68 l~~~l~------~~r~LlVlDdv~~~ 87 (700)
+...+. .+.-+||+|.+...
T Consensus 218 ~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 218 AEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred HHHHHHHhccccCCCCEEEEeCchHh
Confidence 444443 35678899987544
No 294
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=81.85 E-value=0.58 Score=41.52 Aligned_cols=17 Identities=12% Similarity=0.161 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.++...
T Consensus 9 ~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 9 PDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp SSSSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 57999999999999986
No 295
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=81.35 E-value=1.1 Score=42.55 Aligned_cols=36 Identities=33% Similarity=0.433 Sum_probs=26.5
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEK 40 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 40 (700)
||+||||+|..++...+ +.-..+.-|+.....+...
T Consensus 9 GGvGKTt~a~~LA~~la---~~g~~VlliD~D~~~~l~~ 44 (254)
T 3kjh_A 9 GGVGKTTVAAGLIKIMA---SDYDKIYAVDGDPDSCLGQ 44 (254)
T ss_dssp SSHHHHHHHHHHHHHHT---TTCSCEEEEEECTTSCHHH
T ss_pred CCCCHHHHHHHHHHHHH---HCCCeEEEEeCCCCcChHH
Confidence 89999999999999983 3335677777666555443
No 296
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=80.94 E-value=1.5 Score=45.39 Aligned_cols=83 Identities=14% Similarity=0.111 Sum_probs=47.1
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCC----EEEEEEeCCcc-CHHHHHHHHHHHcCC------CCCCCCCccHHH----HHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFD----YVIWVVVSKDL-QLEKIQETIRKKIGL------CNDSWKNKSLEE----KAQ 66 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~----~~~wv~~~~~~-~~~~~~~~i~~~~~~------~~~~~~~~~~~~----~~~ 66 (700)
+|+|||+|+.++++.. ..+.+ .++++-+++.. ...++.+.+.+.-.. ......+.-... ..-
T Consensus 160 ~G~GKt~L~~~Ia~~~---~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~~~a~ 236 (465)
T 3vr4_D 160 SGLPHKELAAQIARQA---TVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATPRMAL 236 (465)
T ss_dssp TTSCHHHHHHHHHHHC---BCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHHHHHH
T ss_pred CCcChHHHHHHHHHHH---HhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHHHHHH
Confidence 6999999999999886 22223 55666666654 577777776553111 000001111111 111
Q ss_pred HHHHHh---ccCcEEEEEcCCCch
Q 005367 67 DIFKTL---SKKKFALLLDDLWER 87 (700)
Q Consensus 67 ~l~~~l---~~~r~LlVlDdv~~~ 87 (700)
.+.+.+ +++.+|+++||+...
T Consensus 237 tiAEyfrd~~G~~VLl~~DslTr~ 260 (465)
T 3vr4_D 237 TAAEYLAYEKGMHVLVIMTDMTNY 260 (465)
T ss_dssp HHHHHHHHTTCCEEEEEEECHHHH
T ss_pred HHHHHHHHhcCCeEEEEEcChHHH
Confidence 233444 368899999999644
No 297
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=80.87 E-value=2.6 Score=43.57 Aligned_cols=80 Identities=15% Similarity=0.124 Sum_probs=40.2
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHH--HHHHHHHHcCCCCCC-CCCccHHHHHHHHHHHhccCcE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEK--IQETIRKKIGLCNDS-WKNKSLEEKAQDIFKTLSKKKF 77 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~--~~~~i~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~r~ 77 (700)
++|+||||++..++.... ..-..+..+++ +...... .+....++.+.+.-. ....+..+......+.++.+.|
T Consensus 106 ~~GsGKTT~~~~LA~~l~---~~g~~Vllvd~-D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~~~~~~ 181 (425)
T 2ffh_A 106 LQGSGKTTTAAKLALYYK---GKGRRPLLVAA-DTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEAR 181 (425)
T ss_dssp CTTSSHHHHHHHHHHHHH---TTTCCEEEEEC-CSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHH---HcCCeEEEeec-cccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHHHHCCC
Confidence 479999999999998872 22234455554 3344332 234455555443100 0112333443333333322333
Q ss_pred -EEEEcCC
Q 005367 78 -ALLLDDL 84 (700)
Q Consensus 78 -LlVlDdv 84 (700)
++|+|-.
T Consensus 182 DvVIIDTa 189 (425)
T 2ffh_A 182 DLILVDTA 189 (425)
T ss_dssp SEEEEECC
T ss_pred CEEEEcCC
Confidence 6677743
No 298
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=80.66 E-value=0.26 Score=49.94 Aligned_cols=50 Identities=8% Similarity=0.037 Sum_probs=36.1
Q ss_pred HHHHHHHHhccCcEEEEEcCCCchhhhhhhcCcCCCCcEEEEecCchhhh
Q 005367 64 KAQDIFKTLSKKKFALLLDDLWERVDLKKIGVPLPKNSAVVFTTRFVDVC 113 (700)
Q Consensus 64 ~~~~l~~~l~~~r~LlVlDdv~~~~~~~~l~~~~~~gs~iiiTTr~~~~~ 113 (700)
....+...|....=++++|...+.+.++.+......|..||+||-..+.+
T Consensus 185 ~~~~La~aL~~~PdvillDEp~d~e~~~~~~~~~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 185 FSEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAA 234 (356)
T ss_dssp HHHHHHHHTTSCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEESCSSHH
T ss_pred HHHHHHHHhhhCcCEEecCCCCCHHHHHHHHHHHhcCCEEEEEEccChHH
Confidence 34477888888888999999998777666544444477788888765544
No 299
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=80.06 E-value=0.72 Score=41.55 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.+++..
T Consensus 13 ~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 13 LMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 57999999999999986
No 300
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=79.88 E-value=4 Score=42.64 Aligned_cols=43 Identities=12% Similarity=-0.041 Sum_probs=29.6
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHH
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRK 47 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 47 (700)
.+|+|||++|.+++..... +.-..++|++... +..++...++.
T Consensus 208 ~pg~GKT~lal~ia~~~a~--~~g~~vl~~slE~--~~~~l~~R~~~ 250 (444)
T 2q6t_A 208 RPAMGKTAFALTIAQNAAL--KEGVGVGIYSLEM--PAAQLTLRMMC 250 (444)
T ss_dssp CTTSCHHHHHHHHHHHHHH--TTCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH--hCCCeEEEEECCC--CHHHHHHHHHH
Confidence 3799999999999988732 1234688887654 35566666554
No 301
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=79.87 E-value=0.74 Score=41.15 Aligned_cols=15 Identities=27% Similarity=0.322 Sum_probs=14.0
Q ss_pred CCCCcHHHHHHHHHh
Q 005367 1 MGGVGKTTLLTQINN 15 (700)
Q Consensus 1 ~gGiGKT~La~~~~~ 15 (700)
++|+||||+|++++.
T Consensus 10 ~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 10 CPGSGKSTWAREFIA 24 (181)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHh
Confidence 589999999999998
No 302
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=79.76 E-value=2.7 Score=51.95 Aligned_cols=78 Identities=15% Similarity=0.075 Sum_probs=51.9
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCC---CCccHHHHHHHHHHHhc-cCc
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSW---KNKSLEEKAQDIFKTLS-KKK 76 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~l~~~l~-~~r 76 (700)
.+|+|||+||.+++.... ..-..++|++..+..+... ++.++...+.. ...+.++....+....+ .+-
T Consensus 391 ~pGsGKTtLaLqia~~~a---~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~~lv~~~~~ 462 (2050)
T 3cmu_A 391 PESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 462 (2050)
T ss_dssp CTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHH---hcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHHHHHHhcCC
Confidence 479999999999998873 2335789999888777542 56666533211 23455666666554443 355
Q ss_pred EEEEEcCCCc
Q 005367 77 FALLLDDLWE 86 (700)
Q Consensus 77 ~LlVlDdv~~ 86 (700)
-++|+|-+..
T Consensus 463 ~lIVIDSL~a 472 (2050)
T 3cmu_A 463 DVIVVDSVAA 472 (2050)
T ss_dssp SEEEESCGGG
T ss_pred cEEEECCHHH
Confidence 6999998853
No 303
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=79.36 E-value=0.79 Score=41.96 Aligned_cols=17 Identities=41% Similarity=0.462 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.++...
T Consensus 33 ~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 33 YMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 58999999999999887
No 304
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=79.34 E-value=3.6 Score=42.70 Aligned_cols=47 Identities=23% Similarity=0.256 Sum_probs=27.7
Q ss_pred CCCCcHHHHHHHHHhhcccCCCC-CCEEEEEEeCCcc-CHHHHHHHHHHHcC
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTD-FDYVIWVVVSKDL-QLEKIQETIRKKIG 50 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~-f~~~~wv~~~~~~-~~~~~~~~i~~~~~ 50 (700)
.+|+||||+|.+++.... .. -..+.-|++.... .....+.......+
T Consensus 108 ~~GvGKTT~a~~LA~~l~---~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~ 156 (433)
T 2xxa_A 108 LQGAGKTTSVGKLGKFLR---EKHKKKVLVVSADVYRPAAIKQLETLAEQVG 156 (433)
T ss_dssp STTSSHHHHHHHHHHHHH---HTSCCCEEEEECCCSSTTHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHH---HhcCCeEEEEecCCCCccHHHHHHhhcccCC
Confidence 489999999999998872 22 3345556654432 23333333344443
No 305
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=79.33 E-value=0.81 Score=40.83 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.++...
T Consensus 12 ~~GsGKsTla~~La~~l 28 (175)
T 1via_A 12 FMGSGKSTLARALAKDL 28 (175)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 58999999999999987
No 306
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=79.08 E-value=1.6 Score=40.75 Aligned_cols=17 Identities=41% Similarity=0.522 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.++..+
T Consensus 16 ~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 16 APGAGKGTQANFIKEKF 32 (230)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999999987
No 307
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=78.74 E-value=0.83 Score=41.35 Aligned_cols=17 Identities=35% Similarity=0.731 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.+++..
T Consensus 9 ~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 9 IPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999999987
No 308
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=77.86 E-value=0.94 Score=40.94 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.++...
T Consensus 11 ~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 11 VPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999999976
No 309
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=77.58 E-value=1.3 Score=42.77 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=23.6
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL 36 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~ 36 (700)
||+||||+|..++...+ ..-..+.-|+.....
T Consensus 10 GGvGKTT~a~nLA~~la---~~G~~VlliD~D~q~ 41 (269)
T 1cp2_A 10 GGIGKSTTTQNLTSGLH---AMGKTIMVVGCDPKA 41 (269)
T ss_dssp TTSSHHHHHHHHHHHHH---TTTCCEEEEEECTTS
T ss_pred CCCcHHHHHHHHHHHHH---HCCCcEEEEcCCCCC
Confidence 89999999999998873 233456777765443
No 310
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=77.57 E-value=0.95 Score=41.00 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.++...
T Consensus 13 ~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 13 HPATGKTTLSQALATGL 29 (193)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 58999999999999886
No 311
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=77.46 E-value=0.99 Score=40.05 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.++...
T Consensus 12 ~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 12 PMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CTTSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 57999999999999986
No 312
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=77.16 E-value=4.1 Score=43.09 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=30.5
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccC-HHHHHHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQ-LEKIQETIR 46 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~ 46 (700)
+|+|||+|+.++++.. +-+.++++-+++... ..++.+.+-
T Consensus 236 ~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~~Ev~e~~~~~~ 276 (588)
T 3mfy_A 236 AGSGKTVTQHQLAKWS-----DAQVVIYIGCGERGNEMTDVLEEFP 276 (588)
T ss_dssp CSHHHHHHHHHHHHHS-----SCSEEEEEECCSSSSHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHHH
Confidence 6899999999998764 335788888888765 666666653
No 313
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=77.08 E-value=1.1 Score=41.33 Aligned_cols=101 Identities=14% Similarity=0.071 Sum_probs=45.4
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEEE
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALLL 81 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVl 81 (700)
-|.||||.|...++++. .....+.++-... +.+.....+.+.++...........+ .+.+...++--+|++
T Consensus 37 MgsGKTT~lL~~a~r~~--~~g~kVli~k~~~---d~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~~~~~dvViI 107 (214)
T 2j9r_A 37 MFSGKSEELIRRVRRTQ--FAKQHAIVFKPCI---DNRYSEEDVVSHNGLKVKAVPVSASK----DIFKHITEEMDVIAI 107 (214)
T ss_dssp TTSCHHHHHHHHHHHHH--HTTCCEEEEECC--------------------CCEEECSSGG----GGGGGCCSSCCEEEE
T ss_pred CCCcHHHHHHHHHHHHH--HCCCEEEEEEecc---CCcchHHHHHhhcCCeeEEeecCCHH----HHHHHHhcCCCEEEE
Confidence 38999999999999982 1233344332221 11122234555554332111111111 222223333349999
Q ss_pred cCCCc--hhhhhhhcCcCCCCcEEEEecCchh
Q 005367 82 DDLWE--RVDLKKIGVPLPKNSAVVFTTRFVD 111 (700)
Q Consensus 82 Ddv~~--~~~~~~l~~~~~~gs~iiiTTr~~~ 111 (700)
|.+.- .++++.+....+.|-.||+|-++.+
T Consensus 108 DEaQF~~~~~V~~l~~l~~~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 108 DEVQFFDGDIVEVVQVLANRGYRVIVAGLDQD 139 (214)
T ss_dssp CCGGGSCTTHHHHHHHHHHTTCEEEEEECSBC
T ss_pred ECcccCCHHHHHHHHHHhhCCCEEEEEecccc
Confidence 98853 3445444332234889999998533
No 314
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=76.92 E-value=1 Score=40.33 Aligned_cols=17 Identities=47% Similarity=0.546 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.+++..
T Consensus 19 ~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 19 TPGVGKTTLGKELASKS 35 (180)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999999886
No 315
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=76.90 E-value=8.3 Score=40.25 Aligned_cols=82 Identities=17% Similarity=0.205 Sum_probs=45.1
Q ss_pred CCCcHHHHHH-HHHhhcccCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCCC-----CC-CCCccHHHH----HHHHH
Q 005367 2 GGVGKTTLLT-QINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIRKKIGLCN-----DS-WKNKSLEEK----AQDIF 69 (700)
Q Consensus 2 gGiGKT~La~-~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~-----~~-~~~~~~~~~----~~~l~ 69 (700)
.|+|||+||. .+++.. ..-..++++-+++.. ...++.+.+.+.-.... .. ..+...... .-.+.
T Consensus 171 ~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a~~~a~tiA 246 (513)
T 3oaa_A 171 RQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAPYAGCAMG 246 (513)
T ss_dssp SSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHHHHHHHHHH
Confidence 5999999974 555543 222245777777765 47777777665421110 11 111111110 11122
Q ss_pred HHh--ccCcEEEEEcCCCch
Q 005367 70 KTL--SKKKFALLLDDLWER 87 (700)
Q Consensus 70 ~~l--~~~r~LlVlDdv~~~ 87 (700)
+.+ +++.+|+|+||+...
T Consensus 247 Eyfrd~G~dVLli~Dsltr~ 266 (513)
T 3oaa_A 247 EYFRDRGEDALIIYDDLSKQ 266 (513)
T ss_dssp HHHHHTTCEEEEEEETHHHH
T ss_pred HHHHhcCCCEEEEecChHHH
Confidence 222 478999999999655
No 316
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=76.80 E-value=1.9 Score=43.06 Aligned_cols=35 Identities=26% Similarity=0.305 Sum_probs=25.5
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 39 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 39 (700)
||+||||+|.+++... ...-..+.-|+.....+..
T Consensus 25 GGvGKTt~a~~lA~~l---a~~g~~vllid~D~~~~l~ 59 (334)
T 3iqw_A 25 GGVGKTTTSCSLAIQL---AKVRRSVLLLSTDPAHNLS 59 (334)
T ss_dssp TTSSHHHHHHHHHHHH---TTSSSCEEEEECCSSCHHH
T ss_pred CCccHHHHHHHHHHHH---HhCCCcEEEEECCCCCChh
Confidence 8999999999999988 3344567777766444333
No 317
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=76.66 E-value=1 Score=40.77 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+|||||++.++...
T Consensus 17 ~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 17 HPGSGKSTIAEALANLP 33 (191)
T ss_dssp CTTSCHHHHHHHHHTCS
T ss_pred CCCCCHHHHHHHHHhcc
Confidence 58999999999998874
No 318
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=76.61 E-value=2.2 Score=39.13 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.++...
T Consensus 12 ~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 12 IDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 57999999999999987
No 319
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=76.50 E-value=1.8 Score=41.64 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=26.9
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKI 41 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 41 (700)
||+||||+|..++...+ .-..+.-|++....+....
T Consensus 37 GGvGKTT~a~~LA~~la----~g~~VlliD~D~~~~~~~~ 72 (267)
T 3k9g_A 37 GGVGKSTSAIILATLLS----KNNKVLLIDMDTQASITSY 72 (267)
T ss_dssp SSSCHHHHHHHHHHHHT----TTSCEEEEEECTTCHHHHH
T ss_pred CCchHHHHHHHHHHHHH----CCCCEEEEECCCCCCHHHH
Confidence 89999999999999983 3356777887665544443
No 320
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=76.43 E-value=7.7 Score=49.72 Aligned_cols=126 Identities=13% Similarity=0.111 Sum_probs=67.6
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHH-hccCcEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKT-LSKKKFAL 79 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~r~Ll 79 (700)
++|+|||++|+++.... ..+ ..+.++.+..-+...++..+...+...... .+.. ..- -.+++.++
T Consensus 1275 PpGtGKT~la~~~l~~~----~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~--~g~~-------~~P~~~gk~~Vl 1340 (2695)
T 4akg_A 1275 PPGSGKTMIMNNALRNS----SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTS--KGLT-------LLPKSDIKNLVL 1340 (2695)
T ss_dssp STTSSHHHHHHHHHHSC----SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEET--TTEE-------EEEBSSSSCEEE
T ss_pred CCCCCHHHHHHHHHhcC----CCC-ceEEEEeecCCCHHHHHHHHHHHhhhcccc--CCcc-------ccCCCCCceEEE
Confidence 58999999998887764 223 445677777767777666666555321000 0000 000 03678899
Q ss_pred EEcCCCch--h------hhhhhcCcC------C--C-------CcEEEEecCchh------hhhcc-cCcceEeccCCCh
Q 005367 80 LLDDLWER--V------DLKKIGVPL------P--K-------NSAVVFTTRFVD------VCGRM-EARRTFKVECLSD 129 (700)
Q Consensus 80 VlDdv~~~--~------~~~~l~~~~------~--~-------gs~iiiTTr~~~------~~~~~-~~~~~~~l~~L~~ 129 (700)
++||++-. + ..+.+...+ . . +..+|.++..+. +-.++ +....+.++..+.
T Consensus 1341 FiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~P~~ 1420 (2695)
T 4akg_A 1341 FCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSG 1420 (2695)
T ss_dssp EEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCCCTT
T ss_pred EecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCCCCH
Confidence 99996422 1 111111111 0 0 234444554331 11111 2235788999988
Q ss_pred HhHHHHHHHHh
Q 005367 130 EAAWELFREKV 140 (700)
Q Consensus 130 ~~a~~l~~~~~ 140 (700)
++-.++|....
T Consensus 1421 ~~l~~I~~~il 1431 (2695)
T 4akg_A 1421 KSLSQIYEIYY 1431 (2695)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888887665
No 321
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=76.23 E-value=1.1 Score=39.50 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.++...
T Consensus 15 ~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 15 FMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 57999999999999986
No 322
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=76.14 E-value=2 Score=41.21 Aligned_cols=48 Identities=8% Similarity=0.016 Sum_probs=30.1
Q ss_pred HHHHHHHhccCcEEEEEcCCCchhhhhhhcCcCCCCcEEEEecCchhh
Q 005367 65 AQDIFKTLSKKKFALLLDDLWERVDLKKIGVPLPKNSAVVFTTRFVDV 112 (700)
Q Consensus 65 ~~~l~~~l~~~r~LlVlDdv~~~~~~~~l~~~~~~gs~iiiTTr~~~~ 112 (700)
...+.+.+..+.=++++|...+.+....+......|..|++||-+.+.
T Consensus 88 ~~~la~aL~~~p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSH
T ss_pred HHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchH
Confidence 445666666667788899997665544332223347778888865443
No 323
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=76.11 E-value=3.1 Score=50.66 Aligned_cols=79 Identities=15% Similarity=0.059 Sum_probs=51.7
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCC---CCCccHHHHHHHHHHHhc-cCc
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDS---WKNKSLEEKAQDIFKTLS-KKK 76 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~l~~~l~-~~r 76 (700)
.+|+|||+||.+++.... ..-..++||+..+..+.. .++.++...+. ....+.++....+....+ .+-
T Consensus 391 ~pGsGKTtLaLq~a~~~~---~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~~lv~~~~~ 462 (1706)
T 3cmw_A 391 PESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 462 (1706)
T ss_dssp STTSSHHHHHHHHHHHHH---HTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHH---HhCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 479999999999998873 234579999988877754 25566543211 123345566555554443 345
Q ss_pred EEEEEcCCCch
Q 005367 77 FALLLDDLWER 87 (700)
Q Consensus 77 ~LlVlDdv~~~ 87 (700)
-++|+|-+...
T Consensus 463 ~lVVIDSL~al 473 (1706)
T 3cmw_A 463 DVIVVDSVAAL 473 (1706)
T ss_dssp SEEEESCSTTC
T ss_pred CEEEECCHHHh
Confidence 69999998644
No 324
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=76.10 E-value=1.1 Score=42.89 Aligned_cols=17 Identities=29% Similarity=0.255 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||||++++.+.
T Consensus 9 ~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 9 PTCSGKTDMAIQIAQET 25 (253)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHhcC
Confidence 57999999999999886
No 325
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=75.96 E-value=2.8 Score=43.28 Aligned_cols=85 Identities=13% Similarity=0.132 Sum_probs=46.6
Q ss_pred CCCcHHHHHHHHHhhcccCC--------CCCC-EEEEEEeCCcc-CHHHHHHHHHHHcCC------CCCCCCCccHH---
Q 005367 2 GGVGKTTLLTQINNKFVDNP--------TDFD-YVIWVVVSKDL-QLEKIQETIRKKIGL------CNDSWKNKSLE--- 62 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~--------~~f~-~~~wv~~~~~~-~~~~~~~~i~~~~~~------~~~~~~~~~~~--- 62 (700)
+|+|||+|+.++++.. ... ++-+ .++++-+++.. ...++.+.+.+.-.. ......+....
T Consensus 156 ~G~GKt~L~~~Ia~~~-~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p~~~r~~~ 234 (464)
T 3gqb_B 156 SGLPANEIAAQIARQA-TVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPTIERILT 234 (464)
T ss_dssp TTSCHHHHHHHHHHHC-BCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSCTHHHHHH
T ss_pred CCCCchHHHHHHHHHH-HhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCCHHHHHHH
Confidence 6999999999998886 221 1122 55666666654 567777766542100 00000111111
Q ss_pred -HHHHHHHHHh---ccCcEEEEEcCCCch
Q 005367 63 -EKAQDIFKTL---SKKKFALLLDDLWER 87 (700)
Q Consensus 63 -~~~~~l~~~l---~~~r~LlVlDdv~~~ 87 (700)
...-.+.+.+ +++.+|+++||+...
T Consensus 235 ~~~a~tiAEyfrd~~G~~VLl~~DdlTr~ 263 (464)
T 3gqb_B 235 PRMALTVAEYLAFEHDYHVLVILTDMTNY 263 (464)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEcChHHH
Confidence 1111233444 368899999999644
No 326
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=75.34 E-value=1.2 Score=40.71 Aligned_cols=17 Identities=35% Similarity=0.599 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+.|+||||+|+.+++..
T Consensus 8 ~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 8 TVGAGKSTISAEISKKL 24 (205)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHhc
Confidence 57999999999999987
No 327
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=75.32 E-value=1.2 Score=40.02 Aligned_cols=17 Identities=24% Similarity=0.495 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.++...
T Consensus 10 ~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 10 LPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 57999999999999986
No 328
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=75.21 E-value=5.1 Score=41.39 Aligned_cols=48 Identities=19% Similarity=0.085 Sum_probs=27.4
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCc-cCHHHHHHHHHHHcCC
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD-LQLEKIQETIRKKIGL 51 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~~~~ 51 (700)
++|+||||++..++.... ..-..+..+++... ....+.+....+..+.
T Consensus 105 ~~GsGKTTt~~kLA~~l~---~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv 153 (433)
T 3kl4_A 105 VQGSGKTTTAGKLAYFYK---KRGYKVGLVAADVYRPAAYDQLLQLGNQIGV 153 (433)
T ss_dssp CTTSCHHHHHHHHHHHHH---HTTCCEEEEEECCSCHHHHHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHHHHHHH---HcCCeEEEEecCccchhHHHHHHHHHHhcCC
Confidence 479999999999998872 22223444543322 1233344445555444
No 329
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=75.20 E-value=2.8 Score=51.01 Aligned_cols=77 Identities=16% Similarity=0.075 Sum_probs=56.7
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCC---CCCccHHHHHHHHHHHhcc-Cc
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDS---WKNKSLEEKAQDIFKTLSK-KK 76 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~-~r 76 (700)
+.|+||||||.++.... .+.-...+||++.+..+..- ++.+++..+. ..+...++.+..+...++. .-
T Consensus 1439 ~~~sGkttl~~~~~a~~---~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~~ 1510 (1706)
T 3cmw_A 1439 PESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 1510 (1706)
T ss_dssp STTSSHHHHHHHHHHHH---HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHH---HhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCCC
Confidence 46999999999998776 55677889999988888764 7777765322 1445557777777777764 45
Q ss_pred EEEEEcCCC
Q 005367 77 FALLLDDLW 85 (700)
Q Consensus 77 ~LlVlDdv~ 85 (700)
-++|+|-|.
T Consensus 1511 ~~vvvDsv~ 1519 (1706)
T 3cmw_A 1511 DVIVVDSVA 1519 (1706)
T ss_dssp SEEEESCST
T ss_pred CEEEEccHH
Confidence 699999884
No 330
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=74.92 E-value=0.47 Score=47.85 Aligned_cols=33 Identities=30% Similarity=0.415 Sum_probs=21.0
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCc
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD 35 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~ 35 (700)
+|+|||+|+.++++........+.+ +++-+++.
T Consensus 184 ~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER 216 (427)
T 3l0o_A 184 PKAGKTTILKEIANGIAENHPDTIR-IILLIDER 216 (427)
T ss_dssp TTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCC
T ss_pred CCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccC
Confidence 7999999999998875211223333 44655554
No 331
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=74.88 E-value=1.2 Score=39.96 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.+++..
T Consensus 12 ~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 12 PPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999999876
No 332
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=74.78 E-value=2.1 Score=40.37 Aligned_cols=31 Identities=19% Similarity=0.186 Sum_probs=23.8
Q ss_pred CCCcHHHHHHHHHhhcccCCCC-CCEEEEEEeCCc
Q 005367 2 GGVGKTTLLTQINNKFVDNPTD-FDYVIWVVVSKD 35 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~-f~~~~wv~~~~~ 35 (700)
||+||||+|..++... ... -..+.-|++...
T Consensus 14 GGvGKTt~a~~LA~~l---a~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 14 GGDGGSCIAANFAFAL---SQEPDIHVLAVDISLP 45 (245)
T ss_dssp TTSSHHHHHHHHHHHH---TTSTTCCEEEEECCTT
T ss_pred CCcchHHHHHHHHHHH---HhCcCCCEEEEECCCC
Confidence 8999999999999998 333 456777776544
No 333
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=74.39 E-value=1.3 Score=39.14 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.++...
T Consensus 10 ~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 10 ARGCGMTTVGRELARAL 26 (173)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 57999999999999986
No 334
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=74.27 E-value=1.3 Score=40.58 Aligned_cols=17 Identities=41% Similarity=0.722 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+++.++...
T Consensus 20 ~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 20 PSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CTTSCHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 58999999999999886
No 335
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=74.23 E-value=4.8 Score=40.09 Aligned_cols=95 Identities=15% Similarity=0.084 Sum_probs=50.3
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALL 80 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlV 80 (700)
..|.|||||++.++.-.. .-...+.+.......... ..+.+.... ..-......+...+..+.=+++
T Consensus 179 ~~GsGKTTll~~l~g~~~----~~~g~i~i~~~~e~~~~~----~~~~i~~~~-----ggg~~~r~~la~aL~~~p~ili 245 (330)
T 2pt7_A 179 GTGSGKTTYIKSIMEFIP----KEERIISIEDTEEIVFKH----HKNYTQLFF-----GGNITSADCLKSCLRMRPDRII 245 (330)
T ss_dssp STTSCHHHHHHHGGGGSC----TTSCEEEEESSCCCCCSS----CSSEEEEEC-----BTTBCHHHHHHHHTTSCCSEEE
T ss_pred CCCCCHHHHHHHHhCCCc----CCCcEEEECCeecccccc----chhEEEEEe-----CCChhHHHHHHHHhhhCCCEEE
Confidence 369999999999998762 234566665322111000 000000000 0112334455667777778899
Q ss_pred EcCCCchhhhhhhcCcCCCCc-EEEEecCc
Q 005367 81 LDDLWERVDLKKIGVPLPKNS-AVVFTTRF 109 (700)
Q Consensus 81 lDdv~~~~~~~~l~~~~~~gs-~iiiTTr~ 109 (700)
+|...+.+.++.+ ..+..|. .+|+||-.
T Consensus 246 ldE~~~~e~~~~l-~~~~~g~~tvi~t~H~ 274 (330)
T 2pt7_A 246 LGELRSSEAYDFY-NVLCSGHKGTLTTLHA 274 (330)
T ss_dssp ECCCCSTHHHHHH-HHHHTTCCCEEEEEEC
T ss_pred EcCCChHHHHHHH-HHHhcCCCEEEEEEcc
Confidence 9999876555544 3333343 36666643
No 336
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=74.19 E-value=1.3 Score=39.81 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHhh
Q 005367 1 MGGVGKTTLLTQINNK 16 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~ 16 (700)
++|+||||+|+.++..
T Consensus 18 ~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 18 TPGTGKTSMAEMIAAE 33 (184)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh
Confidence 5799999999999988
No 337
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=74.18 E-value=8.3 Score=39.91 Aligned_cols=17 Identities=35% Similarity=0.632 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
.+|+||||++.+++...
T Consensus 108 ~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 108 IQGSGKTTTVAKLARYF 124 (443)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 47999999999999887
No 338
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=74.08 E-value=5.4 Score=41.74 Aligned_cols=81 Identities=22% Similarity=0.227 Sum_probs=45.6
Q ss_pred CCCcHHHHHH-HHHhhcccCCCCCCE-EEEEEeCCcc-CHHHHHHHHHHHcCCCC------CCCCCccHHHH----HHHH
Q 005367 2 GGVGKTTLLT-QINNKFVDNPTDFDY-VIWVVVSKDL-QLEKIQETIRKKIGLCN------DSWKNKSLEEK----AQDI 68 (700)
Q Consensus 2 gGiGKT~La~-~~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~~~~~~------~~~~~~~~~~~----~~~l 68 (700)
+|+|||+||. ++++.. .-+. ++++-+++.. ...++.+.+.+.-.... ....+...... .-.+
T Consensus 171 ~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~~~a~ti 245 (502)
T 2qe7_A 171 RQTGKTTIAIDTIINQK-----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAPYAGCAM 245 (502)
T ss_dssp SSSCHHHHHHHHHHGGG-----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHhh-----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 6999999965 666664 2453 4667777765 46777777765322110 11111111110 1122
Q ss_pred HHHh--ccCcEEEEEcCCCch
Q 005367 69 FKTL--SKKKFALLLDDLWER 87 (700)
Q Consensus 69 ~~~l--~~~r~LlVlDdv~~~ 87 (700)
.+.+ +++.+|+++||+...
T Consensus 246 AEyfrd~G~dVLl~~Dsltr~ 266 (502)
T 2qe7_A 246 GEYFMYKGKHALVVYDDLSKQ 266 (502)
T ss_dssp HHHHHTTTCEEEEEEECHHHH
T ss_pred HHHHHHcCCcEEEEEecHHHH
Confidence 2333 478999999999655
No 339
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=74.04 E-value=6.4 Score=39.08 Aligned_cols=48 Identities=25% Similarity=0.366 Sum_probs=28.6
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC-ccCHHHHHHHHHHHcCC
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK-DLQLEKIQETIRKKIGL 51 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~~~~ 51 (700)
+.|+||||+++.++...... .. .+.++.... .....+.+....++++.
T Consensus 137 ~nGaGKTTll~~Lag~l~~~--~g-~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 137 FNGSGKTTTIAKLANWLKNH--GF-SVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CTTSSHHHHHHHHHHHHHHT--TC-CEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHhc--CC-EEEEEeecccccchHHHHHHHHHHcCc
Confidence 47999999999998876221 22 344444322 22344555666666653
No 340
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=74.02 E-value=2 Score=42.76 Aligned_cols=37 Identities=22% Similarity=0.213 Sum_probs=25.7
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKI 41 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 41 (700)
||+||||+|.+++...+ +.-..+.-|+.....+....
T Consensus 23 GGvGKTTvA~~LA~~lA---~~G~rVLlvD~D~~~~l~~~ 59 (324)
T 3zq6_A 23 GGVGKTTISAATALWMA---RSGKKTLVISTDPAHSLSDS 59 (324)
T ss_dssp TTSSHHHHHHHHHHHHH---HTTCCEEEEECCSSCCHHHH
T ss_pred CCchHHHHHHHHHHHHH---HCCCcEEEEeCCCCcCHHHH
Confidence 89999999999998873 23345666776554444433
No 341
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=73.97 E-value=5.3 Score=39.04 Aligned_cols=80 Identities=16% Similarity=0.118 Sum_probs=40.3
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHH--HHHHHHHHcCCCCCC-CCCccHHHHHHH-HHHHhccCc
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEK--IQETIRKKIGLCNDS-WKNKSLEEKAQD-IFKTLSKKK 76 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~--~~~~i~~~~~~~~~~-~~~~~~~~~~~~-l~~~l~~~r 76 (700)
.+|+||||++..++..... .-..+.+++... ..... .+....+..+...-. ....+..++... +......+.
T Consensus 106 ~~G~GKTT~~~~la~~~~~---~~~~v~l~~~d~-~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~~~~~ 181 (295)
T 1ls1_A 106 LQGSGKTTTAAKLALYYKG---KGRRPLLVAADT-QRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEAR 181 (295)
T ss_dssp CTTTTHHHHHHHHHHHHHH---TTCCEEEEECCS-SCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHH---cCCeEEEecCCc-ccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHHhCCC
Confidence 4799999999999988722 223455555433 22222 233444544432110 012233344332 333322444
Q ss_pred EEEEEcCC
Q 005367 77 FALLLDDL 84 (700)
Q Consensus 77 ~LlVlDdv 84 (700)
=++|+|--
T Consensus 182 D~viiDtp 189 (295)
T 1ls1_A 182 DLILVDTA 189 (295)
T ss_dssp CEEEEECC
T ss_pred CEEEEeCC
Confidence 57888865
No 342
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=73.94 E-value=1 Score=40.31 Aligned_cols=17 Identities=29% Similarity=0.417 Sum_probs=11.5
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.++...
T Consensus 13 ~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 13 PFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CC----CHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 57999999999999886
No 343
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=73.50 E-value=1.4 Score=40.29 Aligned_cols=17 Identities=35% Similarity=0.640 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|.||||+|+.++...
T Consensus 33 ~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 33 LSGSGKSTLACALNQML 49 (200)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 57999999999999887
No 344
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=73.39 E-value=1.5 Score=42.82 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=23.2
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL 36 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~ 36 (700)
||+||||+|..++...+. .-..+.-|++....
T Consensus 11 GGvGKTT~a~nLA~~La~---~G~rVlliD~D~q~ 42 (289)
T 2afh_E 11 GGIGKSTTTQNLVAALAE---MGKKVMIVGCDPKA 42 (289)
T ss_dssp TTSSHHHHHHHHHHHHHH---TTCCEEEEEECSSS
T ss_pred CcCcHHHHHHHHHHHHHH---CCCeEEEEecCCCC
Confidence 899999999999988732 23356667765543
No 345
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=73.32 E-value=1.4 Score=39.83 Aligned_cols=17 Identities=35% Similarity=0.448 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.++...
T Consensus 11 ~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 11 GPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 57999999999999886
No 346
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=73.31 E-value=1.5 Score=38.63 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.+++..
T Consensus 8 ~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 8 FMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 57999999999999986
No 347
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=73.20 E-value=1.4 Score=40.22 Aligned_cols=17 Identities=29% Similarity=0.417 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.++...
T Consensus 28 ~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 28 PPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 57999999999999986
No 348
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=73.04 E-value=5.1 Score=43.77 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=22.4
Q ss_pred EEEEEcCCCch--hhhhhhcCcCCCCcEEEEec
Q 005367 77 FALLLDDLWER--VDLKKIGVPLPKNSAVVFTT 107 (700)
Q Consensus 77 ~LlVlDdv~~~--~~~~~l~~~~~~gs~iiiTT 107 (700)
-+||+|.++.. ..++.+...++.+.++|+.-
T Consensus 264 d~lIIDEAsml~~~~~~~Ll~~l~~~~~liLvG 296 (608)
T 1w36_D 264 DVLVVDEASMIDLPMMSRLIDALPDHARVIFLG 296 (608)
T ss_dssp SEEEECSGGGCBHHHHHHHHHTCCTTCEEEEEE
T ss_pred CEEEEechhhCCHHHHHHHHHhCCCCCEEEEEc
Confidence 38999999744 34566766777788887764
No 349
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=73.00 E-value=1.5 Score=39.47 Aligned_cols=17 Identities=35% Similarity=0.624 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.++...
T Consensus 21 ~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 21 LPGSGKTTIATRLADLL 37 (186)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 57999999999999886
No 350
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=72.92 E-value=5.3 Score=37.55 Aligned_cols=99 Identities=15% Similarity=0.119 Sum_probs=47.6
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCC-C-----C-----CCCCccHHHHHHHHH
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLC-N-----D-----SWKNKSLEEKAQDIF 69 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~-~-----~-----~~~~~~~~~~~~~l~ 69 (700)
..|.|||.+|..++... . ..++++ +....-..+..+.+.+ ++.. . . .......+.+... .
T Consensus 116 ~tG~GKT~~a~~~~~~~---~---~~~liv-~P~~~L~~q~~~~~~~-~~~~~v~~~~g~~~~~~~i~v~T~~~l~~~-~ 186 (237)
T 2fz4_A 116 PTGSGKTHVAMAAINEL---S---TPTLIV-VPTLALAEQWKERLGI-FGEEYVGEFSGRIKELKPLTVSTYDSAYVN-A 186 (237)
T ss_dssp SSSTTHHHHHHHHHHHS---C---SCEEEE-ESSHHHHHHHHHHHGG-GCGGGEEEESSSCBCCCSEEEEEHHHHHHT-H
T ss_pred CCCCCHHHHHHHHHHHc---C---CCEEEE-eCCHHHHHHHHHHHHh-CCCCeEEEEeCCCCCcCCEEEEeHHHHHhh-H
Confidence 36999999999988774 1 223433 2222222333333333 3221 0 0 0001112222222 2
Q ss_pred HHhccCcEEEEEcCCCchh--hhhhhcCcCCCCcEEEEecC
Q 005367 70 KTLSKKKFALLLDDLWERV--DLKKIGVPLPKNSAVVFTTR 108 (700)
Q Consensus 70 ~~l~~~r~LlVlDdv~~~~--~~~~l~~~~~~gs~iiiTTr 108 (700)
..+.++--+||+|++.... .+..+...++...++.+|..
T Consensus 187 ~~~~~~~~llIiDEaH~l~~~~~~~i~~~~~~~~~l~LSAT 227 (237)
T 2fz4_A 187 EKLGNRFMLLIFDEVHHLPAESYVQIAQMSIAPFRLGLTAT 227 (237)
T ss_dssp HHHTTTCSEEEEECSSCCCTTTHHHHHHTCCCSEEEEEEES
T ss_pred HHhcccCCEEEEECCccCCChHHHHHHHhccCCEEEEEecC
Confidence 2333445699999997653 34444444444455555543
No 351
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=72.88 E-value=1.5 Score=38.95 Aligned_cols=17 Identities=18% Similarity=0.604 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.++...
T Consensus 16 ~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 16 VSGSGKSAVASEVAHQL 32 (175)
T ss_dssp STTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 57999999999998875
No 352
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=72.44 E-value=1.8 Score=42.65 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=23.9
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccC
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQ 37 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~ 37 (700)
||+||||+|..++...+. .-..+.-|++....+
T Consensus 50 GGvGKTT~a~nLA~~La~---~G~~VlliD~D~~~~ 82 (307)
T 3end_A 50 GGIGKSTTSSNLSAAFSI---LGKRVLQIGCDPKHD 82 (307)
T ss_dssp TTSSHHHHHHHHHHHHHH---TTCCEEEEEESSSCC
T ss_pred CCccHHHHHHHHHHHHHH---CCCeEEEEeCCCCCC
Confidence 899999999999888732 233577777665443
No 353
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=72.39 E-value=1.6 Score=39.72 Aligned_cols=17 Identities=29% Similarity=0.389 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.+++..
T Consensus 20 ~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 20 GPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 57999999999999987
No 354
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=72.30 E-value=1.5 Score=42.02 Aligned_cols=17 Identities=29% Similarity=0.567 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.++...
T Consensus 12 ~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 12 LPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999999874
No 355
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=72.29 E-value=1.5 Score=40.51 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.++.+.
T Consensus 8 ~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 8 LPGAGKGTQGERIVEKY 24 (216)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 57999999999999886
No 356
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=72.16 E-value=2 Score=41.90 Aligned_cols=37 Identities=16% Similarity=0.225 Sum_probs=25.7
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC-ccCHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK-DLQLEKI 41 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~ 41 (700)
||+||||+|..++...+. .-..+.-|+... ..+....
T Consensus 14 GGvGKTT~a~nLA~~La~---~G~~VlliD~D~~q~~l~~~ 51 (286)
T 2xj4_A 14 GGAGKSTIAVHLVTALLY---GGAKVAVIDLDLRQRTSARF 51 (286)
T ss_dssp SCTTHHHHHHHHHHHHHH---TTCCEEEEECCTTTCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH---CCCcEEEEECCCCCCCHHHH
Confidence 899999999999988732 233466677666 4444443
No 357
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=72.11 E-value=1.5 Score=40.52 Aligned_cols=17 Identities=41% Similarity=0.575 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.++.+.
T Consensus 8 ~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 8 LPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 57999999999999886
No 358
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=72.09 E-value=1.6 Score=40.67 Aligned_cols=17 Identities=29% Similarity=0.511 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.++...
T Consensus 12 ~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 12 PPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 58999999999999987
No 359
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=72.08 E-value=1.3 Score=39.88 Aligned_cols=17 Identities=35% Similarity=0.661 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+|||||++++..+.
T Consensus 9 PSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 9 PSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CTTSSHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 58999999999998876
No 360
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=72.03 E-value=3 Score=37.60 Aligned_cols=17 Identities=29% Similarity=0.472 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+.|+||||+|+.+++..
T Consensus 8 ~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 8 IDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp STTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999999976
No 361
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=71.96 E-value=4.1 Score=42.66 Aligned_cols=81 Identities=15% Similarity=0.238 Sum_probs=44.2
Q ss_pred CCCcHHHHHH-HHHhhcccCCCCCC-EEEEEEeCCcc-CHHHHHHHHHHHcCC--------CCCCCCCccHH--HHHHHH
Q 005367 2 GGVGKTTLLT-QINNKFVDNPTDFD-YVIWVVVSKDL-QLEKIQETIRKKIGL--------CNDSWKNKSLE--EKAQDI 68 (700)
Q Consensus 2 gGiGKT~La~-~~~~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~~~~--------~~~~~~~~~~~--~~~~~l 68 (700)
+|+|||+||. ++++.. .-+ .++++-+++.. ...++.+.+...-.. +.+++...... ...-.+
T Consensus 172 ~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~~a~ti 246 (507)
T 1fx0_A 172 RQTGKTAVATDTILNQQ-----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYTGAAL 246 (507)
T ss_dssp SSSSHHHHHHHHHHTCC-----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHHHHHHHHH
Confidence 6999999965 666654 244 34666667665 466666666553111 11111111111 111112
Q ss_pred HHHh--ccCcEEEEEcCCCch
Q 005367 69 FKTL--SKKKFALLLDDLWER 87 (700)
Q Consensus 69 ~~~l--~~~r~LlVlDdv~~~ 87 (700)
.+.+ +++.+|+++||+...
T Consensus 247 AEyfrd~G~dVLli~Dsltr~ 267 (507)
T 1fx0_A 247 AEYFMYRERHTLIIYDDLSKQ 267 (507)
T ss_dssp HHHHHHTTCEEEEEEECHHHH
T ss_pred HHHHHHcCCcEEEEEecHHHH
Confidence 2222 478999999998655
No 362
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=71.95 E-value=3 Score=37.70 Aligned_cols=17 Identities=24% Similarity=0.485 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+.|+||||+|+.+.+..
T Consensus 8 ~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 8 IDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999999886
No 363
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=71.94 E-value=2.1 Score=41.97 Aligned_cols=33 Identities=24% Similarity=0.129 Sum_probs=24.1
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccC
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQ 37 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~ 37 (700)
||+||||+|..++...+. .-..+.-|+.....+
T Consensus 46 GGvGKTT~a~nLA~~la~---~G~rVlliD~D~q~~ 78 (298)
T 2oze_A 46 GGVGKSKLSTMFAYLTDK---LNLKVLMIDKDLQAT 78 (298)
T ss_dssp SSSSHHHHHHHHHHHHHH---TTCCEEEEEECTTCH
T ss_pred CCchHHHHHHHHHHHHHh---CCCeEEEEeCCCCCC
Confidence 899999999999988732 223567777765544
No 364
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=71.83 E-value=1.5 Score=42.92 Aligned_cols=17 Identities=35% Similarity=0.407 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|++++.+.
T Consensus 41 ~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 41 QPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CTTSCTHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999999875
No 365
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=71.76 E-value=1.6 Score=40.76 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.++...
T Consensus 15 ~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 15 APGSGKGTVSSRITTHF 31 (227)
T ss_dssp CTTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 58999999999999886
No 366
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=71.57 E-value=2.6 Score=45.60 Aligned_cols=31 Identities=13% Similarity=0.180 Sum_probs=22.7
Q ss_pred EEEEEcCCCch--hhhhhhcCcCCCCcEEEEec
Q 005367 77 FALLLDDLWER--VDLKKIGVPLPKNSAVVFTT 107 (700)
Q Consensus 77 ~LlVlDdv~~~--~~~~~l~~~~~~gs~iiiTT 107 (700)
-+||+|.+... ..+..+...++.+.++|+.-
T Consensus 281 dvlIIDEasml~~~~~~~Ll~~~~~~~~lilvG 313 (574)
T 3e1s_A 281 DLLIVDEVSMMGDALMLSLLAAVPPGARVLLVG 313 (574)
T ss_dssp SEEEECCGGGCCHHHHHHHHTTSCTTCEEEEEE
T ss_pred CEEEEcCccCCCHHHHHHHHHhCcCCCEEEEEe
Confidence 48999999755 45667767777777777754
No 367
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=71.31 E-value=2.3 Score=40.64 Aligned_cols=36 Identities=25% Similarity=0.245 Sum_probs=25.1
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC-ccCHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK-DLQLEK 40 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~ 40 (700)
||+||||+|..++...+. .-..+.-|+... ..+...
T Consensus 12 gGvGKTt~a~~LA~~la~---~g~~VlliD~D~~~~~~~~ 48 (260)
T 3q9l_A 12 GGVGKTTSSAAIATGLAQ---KGKKTVVIDFAIGLRNLDL 48 (260)
T ss_dssp TTSSHHHHHHHHHHHHHH---TTCCEEEEECCCSSCCHHH
T ss_pred CCCcHHHHHHHHHHHHHh---CCCcEEEEECCCCCCChhH
Confidence 899999999999988832 233567777654 344443
No 368
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=71.20 E-value=1.7 Score=39.21 Aligned_cols=16 Identities=31% Similarity=0.509 Sum_probs=14.1
Q ss_pred CCCCcHHHHHHHHHhh
Q 005367 1 MGGVGKTTLLTQINNK 16 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~ 16 (700)
+.|+||||+++.++..
T Consensus 10 ~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 10 PAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHhcc
Confidence 5799999999999864
No 369
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=71.09 E-value=5.8 Score=40.99 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|++++.+.
T Consensus 266 ~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 266 FPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CTTSSHHHHHHHHTGGG
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 58999999999999875
No 370
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=71.08 E-value=1.7 Score=40.53 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.++...
T Consensus 13 ~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 13 APASGKGTQCELIKTKY 29 (222)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999999987
No 371
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=70.81 E-value=1.8 Score=38.77 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+.|+|||||++.+....
T Consensus 13 psGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 13 AHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CTTSSHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 57999999999998875
No 372
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=70.61 E-value=1.5 Score=41.94 Aligned_cols=31 Identities=29% Similarity=0.313 Sum_probs=23.1
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCc
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD 35 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~ 35 (700)
||+||||+|..++...+. .-..+.-|+....
T Consensus 16 GGvGKTt~a~~LA~~la~---~g~~VlliD~D~~ 46 (257)
T 1wcv_1 16 GGVGKTTTAINLAAYLAR---LGKRVLLVDLDPQ 46 (257)
T ss_dssp CCHHHHHHHHHHHHHHHH---TTCCEEEEECCTT
T ss_pred CCchHHHHHHHHHHHHHH---CCCCEEEEECCCC
Confidence 899999999999988732 2345667776544
No 373
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=70.45 E-value=2.8 Score=42.13 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=23.5
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL 36 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~ 36 (700)
||+||||+|.+++...+.. ..-..+.-|+.....
T Consensus 27 GGvGKTt~a~~lA~~la~~-~~g~~vllid~D~~~ 60 (348)
T 3io3_A 27 GGVGKTTTSSSVAVQLALA-QPNEQFLLISTDPAH 60 (348)
T ss_dssp TTSSHHHHHHHHHHHHHHH-CTTSCEEEEECCSSC
T ss_pred CCCcHHHHHHHHHHHHHHh-cCCCeEEEEECCCCC
Confidence 8999999999999887200 334456667765433
No 374
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=70.09 E-value=5 Score=42.07 Aligned_cols=42 Identities=14% Similarity=0.164 Sum_probs=28.2
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHH
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIR 46 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 46 (700)
.+|+||||+|.+++...... .-..++|++...+ ..++...++
T Consensus 211 ~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~E~s--~~~l~~r~~ 252 (454)
T 2r6a_A 211 RPSVGKTAFALNIAQNVATK--TNENVAIFSLEMS--AQQLVMRML 252 (454)
T ss_dssp CTTSCHHHHHHHHHHHHHHH--SSCCEEEEESSSC--HHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHh--CCCcEEEEECCCC--HHHHHHHHH
Confidence 37999999999999886211 2246888876543 455555553
No 375
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=70.08 E-value=1.8 Score=40.09 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.++...
T Consensus 13 ~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 13 APGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999999987
No 376
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=70.01 E-value=1.9 Score=39.43 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.+++..
T Consensus 23 ~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 23 GPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 57999999999999886
No 377
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=69.93 E-value=4.6 Score=42.30 Aligned_cols=81 Identities=19% Similarity=0.230 Sum_probs=45.4
Q ss_pred CCCcHHHHHH-HHHhhcccCCCCCCE-EEEEEeCCcc-CHHHHHHHHHHHcCC------CCCCCCCccHHHH----HHHH
Q 005367 2 GGVGKTTLLT-QINNKFVDNPTDFDY-VIWVVVSKDL-QLEKIQETIRKKIGL------CNDSWKNKSLEEK----AQDI 68 (700)
Q Consensus 2 gGiGKT~La~-~~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~~~~------~~~~~~~~~~~~~----~~~l 68 (700)
+|+|||+||. ++++.. .-+. ++++-+++.. ...++.+.+...-.. ......+...... .-.+
T Consensus 184 ~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~~a~ti 258 (515)
T 2r9v_A 184 RQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIAPYAGCAM 258 (515)
T ss_dssp TTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 6999999965 666654 3453 4667777765 477777777653211 0111111111111 1122
Q ss_pred HHHh--ccCcEEEEEcCCCch
Q 005367 69 FKTL--SKKKFALLLDDLWER 87 (700)
Q Consensus 69 ~~~l--~~~r~LlVlDdv~~~ 87 (700)
.+.+ +++.+|+++||+...
T Consensus 259 AEyfrd~G~dVLli~DslTr~ 279 (515)
T 2r9v_A 259 GEYFAYSGRDALVVYDDLSKH 279 (515)
T ss_dssp HHHHHTTTCEEEEEEETHHHH
T ss_pred HHHHHHcCCcEEEEeccHHHH
Confidence 3333 478999999999655
No 378
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=69.50 E-value=3 Score=39.98 Aligned_cols=32 Identities=22% Similarity=0.155 Sum_probs=23.0
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL 36 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~ 36 (700)
||+||||+|..++...+. .-..+.-|+.....
T Consensus 28 GGvGKTT~a~nLA~~la~---~G~~VlliD~D~~~ 59 (262)
T 2ph1_A 28 GGVGKSTVTALLAVHYAR---QGKKVGILDADFLG 59 (262)
T ss_dssp SCTTHHHHHHHHHHHHHH---TTCCEEEEECCSSC
T ss_pred CCCCHHHHHHHHHHHHHH---CCCeEEEEeCCCCC
Confidence 899999999999988732 22346667765544
No 379
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=69.45 E-value=2.3 Score=42.87 Aligned_cols=30 Identities=30% Similarity=0.324 Sum_probs=21.6
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK 34 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~ 34 (700)
||+||||+|.+++...+. .-..+.-|+...
T Consensus 35 GGvGKTTvA~~LA~~lA~---~G~rVLlvD~D~ 64 (349)
T 3ug7_A 35 GGVGKTTMSAATGVYLAE---KGLKVVIVSTDP 64 (349)
T ss_dssp SSTTHHHHHHHHHHHHHH---SSCCEEEEECCT
T ss_pred CCccHHHHHHHHHHHHHH---CCCeEEEEeCCC
Confidence 899999999999888732 233566666544
No 380
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=69.44 E-value=1.9 Score=39.86 Aligned_cols=17 Identities=29% Similarity=0.224 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.++...
T Consensus 8 ~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 8 APVAGKGTQAQFIMEKY 24 (214)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999999986
No 381
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=69.30 E-value=2 Score=38.72 Aligned_cols=17 Identities=35% Similarity=0.384 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.+++..
T Consensus 14 ~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 14 GPGSGKGTQCANIVRDF 30 (194)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999999886
No 382
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=69.27 E-value=0.78 Score=46.80 Aligned_cols=47 Identities=9% Similarity=0.015 Sum_probs=30.6
Q ss_pred HHHHHHHhccCcEEEEEcCCCchhhhhhhcCcCCCCcEEEEecCchh
Q 005367 65 AQDIFKTLSKKKFALLLDDLWERVDLKKIGVPLPKNSAVVFTTRFVD 111 (700)
Q Consensus 65 ~~~l~~~l~~~r~LlVlDdv~~~~~~~~l~~~~~~gs~iiiTTr~~~ 111 (700)
...+...+....=++++|.+.+.+.+.........|..|+.|+-..+
T Consensus 199 ~~~l~~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNT 245 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCS
T ss_pred HHHHHHHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcch
Confidence 44667777777778999999877655543333344677777765433
No 383
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=69.26 E-value=2.7 Score=39.45 Aligned_cols=30 Identities=27% Similarity=0.223 Sum_probs=22.8
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK 34 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~ 34 (700)
||+||||+|..++...+ ..-..+.-|+...
T Consensus 12 gGvGKTt~a~~LA~~la---~~g~~VlliD~D~ 41 (237)
T 1g3q_A 12 GGTGKTTVTANLSVALG---DRGRKVLAVDGDL 41 (237)
T ss_dssp TTSSHHHHHHHHHHHHH---HTTCCEEEEECCT
T ss_pred CCCCHHHHHHHHHHHHH---hcCCeEEEEeCCC
Confidence 89999999999998873 2234667777654
No 384
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=68.90 E-value=3 Score=41.55 Aligned_cols=31 Identities=26% Similarity=0.317 Sum_probs=22.8
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCc
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD 35 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~ 35 (700)
||+||||+|..++...+ +.-..+.-|+....
T Consensus 28 GGvGKTTva~~LA~~lA---~~G~rVllvD~D~~ 58 (329)
T 2woo_A 28 GGVGKTTTSCSLAIQMS---KVRSSVLLISTDPA 58 (329)
T ss_dssp SSSSHHHHHHHHHHHHH---TSSSCEEEEECCTT
T ss_pred CCCcHHHHHHHHHHHHH---HCCCeEEEEECCCC
Confidence 89999999999998873 23345666765544
No 385
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=68.79 E-value=2 Score=39.42 Aligned_cols=17 Identities=18% Similarity=0.216 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+.|+||||+|+.+++..
T Consensus 18 ~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 18 LDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999999876
No 386
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=68.47 E-value=2.1 Score=40.26 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.+++..
T Consensus 24 ~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 24 PPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 57999999999999987
No 387
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=68.30 E-value=4.5 Score=40.06 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=20.1
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEe
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVV 32 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~ 32 (700)
.+|+||||++..++..... .-..+.+++.
T Consensus 113 ~~G~GKTT~~~~LA~~l~~---~g~kVllid~ 141 (320)
T 1zu4_A 113 VNGTGKTTSLAKMANYYAE---LGYKVLIAAA 141 (320)
T ss_dssp STTSSHHHHHHHHHHHHHH---TTCCEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHH---CCCeEEEEeC
Confidence 3799999999999988722 2234555554
No 388
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=68.28 E-value=2 Score=43.74 Aligned_cols=34 Identities=18% Similarity=0.182 Sum_probs=24.8
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQL 38 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 38 (700)
||+||||+|..++...+ ..-..+.-|++....+.
T Consensus 153 GGvGKTT~a~nLA~~La---~~g~rVlliD~D~~~~l 186 (373)
T 3fkq_A 153 GGVGTSTVAAACAIAHA---NMGKKVFYLNIEQCGTT 186 (373)
T ss_dssp TTSSHHHHHHHHHHHHH---HHTCCEEEEECCTTCCH
T ss_pred CCChHHHHHHHHHHHHH---hCCCCEEEEECCCCCCH
Confidence 89999999999988873 23346778887744443
No 389
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=68.27 E-value=2.1 Score=39.89 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.++...
T Consensus 8 ~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 8 PNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999999887
No 390
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=68.03 E-value=2.1 Score=40.57 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+.|+|||||++.+++..
T Consensus 35 ~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 35 PPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 57999999999999776
No 391
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=67.96 E-value=3.8 Score=39.04 Aligned_cols=17 Identities=35% Similarity=0.495 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
.||+||||++.+++...
T Consensus 22 kgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 22 TAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 38999999999999887
No 392
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=67.86 E-value=2.2 Score=39.22 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+.|+|||||++.++...
T Consensus 16 psGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 16 PSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CTTSCHHHHHHHHHHST
T ss_pred cCCCCHHHHHHHHHhhC
Confidence 57999999999999886
No 393
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=67.78 E-value=7.8 Score=40.64 Aligned_cols=17 Identities=41% Similarity=0.784 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
..|+|||||++.++...
T Consensus 301 pNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 301 VNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHh
Confidence 37999999999998876
No 394
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=67.78 E-value=3 Score=43.31 Aligned_cols=86 Identities=12% Similarity=0.027 Sum_probs=48.1
Q ss_pred CCCcHHHHHHHHHhhcccCC-CCCCEEEEEEeCCcc-CHHHHHHHHHHHcCCC-----CCCC-CCccHH----HHHHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNP-TDFDYVIWVVVSKDL-QLEKIQETIRKKIGLC-----NDSW-KNKSLE----EKAQDIF 69 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~-~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~-----~~~~-~~~~~~----~~~~~l~ 69 (700)
+|+|||+|+.+++....-.. +.-+.++++-+++.. ...++.+.+...-... .... .+.... ...-.+.
T Consensus 161 ~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~~~~a~tiA 240 (469)
T 2c61_A 161 SGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAA 240 (469)
T ss_dssp TTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 69999999999999872111 122466777666655 5777777776542110 0000 111111 1111233
Q ss_pred HHh---ccCcEEEEEcCCCch
Q 005367 70 KTL---SKKKFALLLDDLWER 87 (700)
Q Consensus 70 ~~l---~~~r~LlVlDdv~~~ 87 (700)
+.+ +++.+|+++||+...
T Consensus 241 Eyfrdd~G~dVLl~~DsltR~ 261 (469)
T 2c61_A 241 EYLAYEHGMHVLVILTDITNY 261 (469)
T ss_dssp HHHHHHHCCEEEEEEECHHHH
T ss_pred HHHHHhcCCeEEEEEeCHHHH
Confidence 333 368999999998544
No 395
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=67.77 E-value=2.3 Score=43.09 Aligned_cols=37 Identities=32% Similarity=0.473 Sum_probs=26.9
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKI 41 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 41 (700)
||+||||+|..++...+ ..-..|.-|++....+....
T Consensus 11 GGvGKTT~a~nLA~~LA---~~G~rVLlID~D~q~~~~~~ 47 (361)
T 3pg5_A 11 GGVGKTTLSTNVAHYFA---LQGKRVLYVDCDPQCNATQL 47 (361)
T ss_dssp CCHHHHHHHHHHHHHHH---HTTCCEEEEECCTTCTTHHH
T ss_pred CCCcHHHHHHHHHHHHH---hCCCcEEEEEcCCCCChhhh
Confidence 89999999999998873 23346777887665554443
No 396
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=67.58 E-value=2.3 Score=38.76 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+.|+||||+|+.+++..
T Consensus 12 ~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 12 LDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CTTSSHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999999886
No 397
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=67.45 E-value=2.3 Score=39.20 Aligned_cols=17 Identities=18% Similarity=0.302 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+.|+||||+|+.+++..
T Consensus 17 ~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 17 VDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999999886
No 398
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=67.20 E-value=4.4 Score=40.81 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=25.4
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEK 40 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 40 (700)
||+||||+|..++...+.. ..-..+.-|+.....+...
T Consensus 27 GGvGKTTvaanLA~~lA~~-~~G~rVLLvD~D~~~~l~~ 64 (354)
T 2woj_A 27 GGVGKTTSSCSIAIQMALS-QPNKQFLLISTDPAHNLSD 64 (354)
T ss_dssp TTSSHHHHHHHHHHHHHHH-CTTSCEEEEECCSSCCHHH
T ss_pred CCCcHHHHHHHHHHHHHHh-cCCCeEEEEECCCCCCHHH
Confidence 8999999999999887300 3334567777655444443
No 399
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=67.19 E-value=2.3 Score=40.32 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.+++++
T Consensus 37 ~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 37 APGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999999886
No 400
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=67.14 E-value=2.3 Score=38.80 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=14.3
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+.|+||||+|+.++. .
T Consensus 9 ~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 9 NIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp CTTSSHHHHHHHHHH-T
T ss_pred CCCcCHHHHHHHHHH-C
Confidence 479999999999988 5
No 401
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=66.84 E-value=3.1 Score=39.77 Aligned_cols=30 Identities=27% Similarity=0.255 Sum_probs=22.5
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK 34 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~ 34 (700)
||+||||+|..++...+. .-..+.-|+...
T Consensus 12 gGvGKTt~a~~LA~~la~---~g~~VlliD~D~ 41 (263)
T 1hyq_A 12 GGTGKTTITANLGVALAQ---LGHDVTIVDADI 41 (263)
T ss_dssp SCSCHHHHHHHHHHHHHH---TTCCEEEEECCC
T ss_pred CCCCHHHHHHHHHHHHHh---CCCcEEEEECCC
Confidence 899999999999988732 233566677654
No 402
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=66.79 E-value=2.4 Score=37.94 Aligned_cols=17 Identities=47% Similarity=0.706 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+.|+|||||++.++...
T Consensus 8 ~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 8 EPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998775
No 403
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=66.60 E-value=2 Score=39.16 Aligned_cols=17 Identities=12% Similarity=0.045 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+|||++|.++++..
T Consensus 66 PPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 66 PANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CGGGCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999999886
No 404
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=66.07 E-value=2.5 Score=39.38 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.++...
T Consensus 13 ~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 13 PSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999999876
No 405
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=65.69 E-value=2.6 Score=38.55 Aligned_cols=17 Identities=35% Similarity=0.372 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+.|+||||+++.++...
T Consensus 14 ~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 14 PSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp STTSCHHHHHHHHHHCT
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 47999999999998875
No 406
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=65.56 E-value=1.9 Score=41.11 Aligned_cols=17 Identities=35% Similarity=0.536 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.++...
T Consensus 40 ~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 40 QSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CGGGTTHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 57999999999999886
No 407
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=65.49 E-value=2.8 Score=42.45 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+|||++|+++++..
T Consensus 59 ppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 59 PTGSGKTLLAETLARLL 75 (363)
T ss_dssp CTTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 58999999999999986
No 408
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=65.37 E-value=2.7 Score=38.38 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+.|+|||||++.++...
T Consensus 15 p~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 15 PSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CTTSCHHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHhhC
Confidence 47999999999998875
No 409
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=65.33 E-value=5.1 Score=42.56 Aligned_cols=40 Identities=25% Similarity=0.327 Sum_probs=29.5
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCcc-CHHHHHHHHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIR 46 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~ 46 (700)
+|+|||+|+.++++.. +-+.++++-+++.. ...++++.+-
T Consensus 241 ~g~GKT~L~~~ia~~~-----~~~v~V~~~iGER~~Ev~e~~~~~~ 281 (600)
T 3vr4_A 241 FGAGKTVVQHQIAKWS-----DVDLVVYVGCGERGNEMTDVVNEFP 281 (600)
T ss_dssp TTSCHHHHHHHHHHHS-----SCSEEEEEEEEECHHHHHHHHHHTT
T ss_pred CCccHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHHH
Confidence 6999999999998875 23678888777764 4666665543
No 410
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=65.31 E-value=4.7 Score=36.68 Aligned_cols=16 Identities=25% Similarity=0.464 Sum_probs=14.8
Q ss_pred CCCcHHHHHHHHHhhc
Q 005367 2 GGVGKTTLLTQINNKF 17 (700)
Q Consensus 2 gGiGKT~La~~~~~~~ 17 (700)
-|+||||.++.+++..
T Consensus 9 DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 9 DGSGKSTQIQLLAQYL 24 (197)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 5999999999999987
No 411
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=65.20 E-value=4.2 Score=38.01 Aligned_cols=17 Identities=29% Similarity=0.620 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+.|+||||+++.++...
T Consensus 34 ~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 34 PEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 57999999999999998
No 412
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=64.89 E-value=4.4 Score=39.98 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+.|+||||||+.++.+.
T Consensus 13 ptGsGKTtla~~La~~l 29 (323)
T 3crm_A 13 PTAAGKTDLAMALADAL 29 (323)
T ss_dssp CTTSCHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 57999999999999987
No 413
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=64.72 E-value=2.7 Score=38.71 Aligned_cols=17 Identities=24% Similarity=0.577 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+.|+||||+|+.++...
T Consensus 33 ~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 33 LSASGKSTLAVELEHQL 49 (211)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 57999999999999876
No 414
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=64.58 E-value=4.3 Score=37.22 Aligned_cols=23 Identities=30% Similarity=0.707 Sum_probs=18.2
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEE
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYV 27 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~ 27 (700)
-|+||||+++.+++.. .+.++.+
T Consensus 11 dGsGKsTq~~~L~~~L---~~~~~v~ 33 (205)
T 4hlc_A 11 EGSGKTTVINEVYHRL---VKDYDVI 33 (205)
T ss_dssp TTSCHHHHHHHHHHHH---TTTSCEE
T ss_pred CCCcHHHHHHHHHHHH---HCCCCEE
Confidence 5999999999999998 3455544
No 415
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=64.39 E-value=16 Score=38.59 Aligned_cols=30 Identities=17% Similarity=0.165 Sum_probs=20.6
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeC
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVS 33 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~ 33 (700)
.+|+||||++.+++.... ..-..+.-|+..
T Consensus 109 ~~GvGKTTl~~kLA~~l~---~~G~kVllVd~D 138 (504)
T 2j37_W 109 LQGSGKTTTCSKLAYYYQ---RKGWKTCLICAD 138 (504)
T ss_dssp STTSSHHHHHHHHHHHHH---HTTCCEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHH---hCCCeEEEEecc
Confidence 379999999999998872 222345555543
No 416
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=63.95 E-value=3 Score=37.14 Aligned_cols=17 Identities=29% Similarity=0.552 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+.|+||||+|+.++...
T Consensus 13 ~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 13 LSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 57999999999999875
No 417
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=63.92 E-value=2.5 Score=37.46 Aligned_cols=14 Identities=29% Similarity=0.371 Sum_probs=11.6
Q ss_pred CCCCcHHHHHHHHH
Q 005367 1 MGGVGKTTLLTQIN 14 (700)
Q Consensus 1 ~gGiGKT~La~~~~ 14 (700)
+.|.|||||++.++
T Consensus 17 ~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 17 SSGSGKSTFAKKHF 30 (171)
T ss_dssp CTTSCHHHHHHHHS
T ss_pred CCCCCHHHHHHHHc
Confidence 47999999999643
No 418
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=63.85 E-value=2.8 Score=38.34 Aligned_cols=15 Identities=33% Similarity=0.370 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHHh
Q 005367 1 MGGVGKTTLLTQINN 15 (700)
Q Consensus 1 ~gGiGKT~La~~~~~ 15 (700)
+.|+||||+++.++.
T Consensus 10 ~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 10 GIGSGKTTIANLFTD 24 (206)
T ss_dssp STTSCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999976
No 419
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=63.19 E-value=3.2 Score=37.70 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+.|+|||||++.++...
T Consensus 27 PSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 27 ASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CTTSSHHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHHhhC
Confidence 57999999999999876
No 420
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=63.08 E-value=2.8 Score=38.50 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
..|.|||||++.++...
T Consensus 30 ~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 30 APGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CTTSCTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999998886
No 421
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=63.05 E-value=3.1 Score=37.38 Aligned_cols=17 Identities=35% Similarity=0.661 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+.|+|||||++.++...
T Consensus 9 psGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 9 PSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp SSSSSHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 47999999999999775
No 422
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=63.00 E-value=3.1 Score=38.68 Aligned_cols=96 Identities=11% Similarity=0.014 Sum_probs=42.8
Q ss_pred CCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEEEc
Q 005367 3 GVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALLLD 82 (700)
Q Consensus 3 GiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlD 82 (700)
|.||||-+...++++. .......++-...+..... .+.++++...........++... .. ++--+|++|
T Consensus 29 gsGKTT~lL~~~~r~~--~~g~kvli~kp~~D~Ryg~----~i~sr~G~~~~a~~i~~~~di~~----~~-~~~dvViID 97 (234)
T 2orv_A 29 FSGKSTELMRRVRRFQ--IAQYKCLVIKYAKDTRYSS----SFCTHDRNTMEALPACLLRDVAQ----EA-LGVAVIGID 97 (234)
T ss_dssp TSCHHHHHHHHHHHHH--TTTCCEEEEEETTCCCC---------------CEEEEESSGGGGHH----HH-TTCSEEEES
T ss_pred CCcHHHHHHHHHHHHH--HCCCeEEEEeecCCccchH----HHHhhcCCeeEEEecCCHHHHHH----Hh-ccCCEEEEE
Confidence 8999999998888872 2234444443332222112 34444443321101111122222 22 223399999
Q ss_pred CCCchhhhhhhcCcC-CCCcEEEEecCc
Q 005367 83 DLWERVDLKKIGVPL-PKNSAVVFTTRF 109 (700)
Q Consensus 83 dv~~~~~~~~l~~~~-~~gs~iiiTTr~ 109 (700)
.+.=...+.++...+ ..|-.||+|.++
T Consensus 98 EaQF~~~v~el~~~l~~~gi~VI~~GL~ 125 (234)
T 2orv_A 98 EGQFFPDIVEFCEAMANAGKTVIVAALD 125 (234)
T ss_dssp SGGGCTTHHHHHHHHHHTTCEEEEECCS
T ss_pred chhhhhhHHHHHHHHHhCCCEEEEEecc
Confidence 874332222222111 137889999887
No 423
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=62.98 E-value=10 Score=37.05 Aligned_cols=17 Identities=35% Similarity=0.724 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+++.++...
T Consensus 110 ~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 110 VNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 47999999999999876
No 424
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=62.93 E-value=3.2 Score=37.71 Aligned_cols=16 Identities=25% Similarity=0.269 Sum_probs=14.2
Q ss_pred CCCCcHHHHHHHHHhh
Q 005367 1 MGGVGKTTLLTQINNK 16 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~ 16 (700)
+.|+||||+|+.++..
T Consensus 16 ~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 16 NIGSGKSTVAALLRSW 31 (203)
T ss_dssp CTTSCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHC
Confidence 4799999999999875
No 425
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=62.88 E-value=3.4 Score=42.10 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+|||++|+.+++..
T Consensus 80 p~GtGKT~la~~la~~l 96 (376)
T 1um8_A 80 PTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CTTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999999886
No 426
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=62.23 E-value=3.2 Score=38.01 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|.||||+|+.+....
T Consensus 29 ~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 29 VTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp STTSSHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 47999999999998875
No 427
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=62.21 E-value=3.2 Score=39.42 Aligned_cols=17 Identities=35% Similarity=0.421 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
|.|+||||+++.++...
T Consensus 56 ~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 56 MMGSGKTTVGKIMARSL 72 (250)
T ss_dssp STTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 68999999999999976
No 428
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=62.11 E-value=3.2 Score=40.65 Aligned_cols=17 Identities=29% Similarity=0.286 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|++++.+.
T Consensus 10 ~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 10 CPGSGKSTWAREFIAKN 26 (301)
T ss_dssp CTTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 58999999999999863
No 429
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=62.09 E-value=3.4 Score=37.46 Aligned_cols=17 Identities=35% Similarity=0.559 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+.|+||||+|+.+.+..
T Consensus 20 ~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 20 KIGTGKSTVCEILKNKY 36 (192)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 47999999999999885
No 430
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=62.07 E-value=0.99 Score=40.99 Aligned_cols=100 Identities=10% Similarity=0.038 Sum_probs=47.8
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHHHHhccCcEEEEE
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKKIGLCNDSWKNKSLEEKAQDIFKTLSKKKFALLL 81 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVl 81 (700)
.|.||||.+...+++.. .......++-..... +.....+...++.........+.+ .+.+.+.++-=.|++
T Consensus 17 mgsGKTT~ll~~a~r~~--~~g~kV~v~k~~~d~---r~~~~~i~s~~g~~~~a~~~~~~~----~i~~~~~~~~dvViI 87 (191)
T 1xx6_A 17 MYSGKSEELIRRIRRAK--IAKQKIQVFKPEIDN---RYSKEDVVSHMGEKEQAVAIKNSR----EILKYFEEDTEVIAI 87 (191)
T ss_dssp TTSSHHHHHHHHHHHHH--HTTCCEEEEEEC----------CEEECTTSCEEECEEESSST----HHHHHCCTTCSEEEE
T ss_pred CCCcHHHHHHHHHHHHH--HCCCEEEEEEeccCc---cchHHHHHhhcCCceeeEeeCCHH----HHHHHHhccCCEEEE
Confidence 48999999999999972 223344443221111 111112333333211100111111 333344433348999
Q ss_pred cCCCc--hhhhhhhcCcCCCCcEEEEecCch
Q 005367 82 DDLWE--RVDLKKIGVPLPKNSAVVFTTRFV 110 (700)
Q Consensus 82 Ddv~~--~~~~~~l~~~~~~gs~iiiTTr~~ 110 (700)
|.+.- .++++.+....+.|..||+|.++.
T Consensus 88 DEaqfl~~~~v~~l~~l~~~~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 88 DEVQFFDDEIVEIVNKIAESGRRVICAGLDM 118 (191)
T ss_dssp CSGGGSCTHHHHHHHHHHHTTCEEEEEECSB
T ss_pred ECCCCCCHHHHHHHHHHHhCCCEEEEEeccc
Confidence 98643 234444433233488899998853
No 431
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=62.03 E-value=3.3 Score=38.79 Aligned_cols=17 Identities=18% Similarity=0.401 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.++...
T Consensus 17 ~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 17 PAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999999887
No 432
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=61.87 E-value=17 Score=33.88 Aligned_cols=86 Identities=15% Similarity=0.100 Sum_probs=41.1
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCC-CEEEEEEeCCccCHHHHHHHHHHHcCCCCCC------------------CCCccH
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDF-DYVIWVVVSKDLQLEKIQETIRKKIGLCNDS------------------WKNKSL 61 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~------------------~~~~~~ 61 (700)
..|.|||++...+.-+.....+.. ...+.+-.....-..+..+.+...++..... ......
T Consensus 84 ~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Ivv~Tp 163 (235)
T 3llm_A 84 ATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIMFCTV 163 (235)
T ss_dssp CTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSSEEEEEEH
T ss_pred CCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCCeEEEECH
Confidence 369999987766544321112221 2233343444444445555555544322100 011233
Q ss_pred HHHHHHHHHHhccCcEEEEEcCCCch
Q 005367 62 EEKAQDIFKTLSKKKFALLLDDLWER 87 (700)
Q Consensus 62 ~~~~~~l~~~l~~~r~LlVlDdv~~~ 87 (700)
..+...+...+. +--+||+|.++..
T Consensus 164 g~l~~~l~~~l~-~~~~lVlDEah~~ 188 (235)
T 3llm_A 164 GVLLRKLEAGIR-GISHVIVDEIHER 188 (235)
T ss_dssp HHHHHHHHHCCT-TCCEEEECCTTSC
T ss_pred HHHHHHHHhhhc-CCcEEEEECCccC
Confidence 344444444333 3348899999873
No 433
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=61.86 E-value=7.6 Score=35.77 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+.|+||||+++.+++..
T Consensus 14 ~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 14 PEGAGKSTNRDYLAERL 30 (213)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999999987
No 434
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=61.76 E-value=2.9 Score=39.44 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=25.0
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHH
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQET 44 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 44 (700)
.+|+|||++|.+++.+.. .+.-..+++++.... ...+.+.
T Consensus 38 ~pG~GKT~l~l~~~~~~~--~~~~~~v~~~s~E~~--~~~~~~~ 77 (251)
T 2zts_A 38 GTGTGKTTFAAQFIYKGA--EEYGEPGVFVTLEER--ARDLRRE 77 (251)
T ss_dssp CTTSSHHHHHHHHHHHHH--HHHCCCEEEEESSSC--HHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH--HhcCCCceeecccCC--HHHHHHH
Confidence 379999999999876631 223346777765543 4444333
No 435
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=61.63 E-value=30 Score=44.52 Aligned_cols=37 Identities=14% Similarity=0.272 Sum_probs=26.3
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHH
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQE 43 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 43 (700)
++|+|||++|+.+++.. . .+ ++-+++++..+..++.+
T Consensus 653 paGtGKTe~vk~LA~~l---g-~~--~v~~nc~e~ld~~~lg~ 689 (2695)
T 4akg_A 653 PAGTGKTETVKAFGQNL---G-RV--VVVFNCDDSFDYQVLSR 689 (2695)
T ss_dssp CTTSCHHHHHHHHHHTT---T-CC--CEEEETTSSCCHHHHHH
T ss_pred CCCCCcHHHHHHHHHHh---C-Cc--EEEEECCCCCChhHhhH
Confidence 58999999999999997 3 22 23347777777666533
No 436
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=61.44 E-value=4.4 Score=39.98 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=21.8
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK 34 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~ 34 (700)
|||||||.|..++.-.+ ..-..|.-|++..
T Consensus 57 GGVGKTTtavNLA~aLA---~~GkkVllID~Dp 86 (314)
T 3fwy_A 57 GGIGKSTTSSNLSAAFS---ILGKRVLQIGCDP 86 (314)
T ss_dssp TTSSHHHHHHHHHHHHH---HTTCCEEEEEESS
T ss_pred CccCHHHHHHHHHHHHH---HCCCeEEEEecCC
Confidence 89999999999887762 2333467777664
No 437
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=61.35 E-value=4.5 Score=41.51 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=24.2
Q ss_pred CCCcHHHHHHHHHhhcccCC---CCCCEEEEEEeCCccC
Q 005367 2 GGVGKTTLLTQINNKFVDNP---TDFDYVIWVVVSKDLQ 37 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~---~~f~~~~wv~~~~~~~ 37 (700)
||+||||+|..++...+... ..-..+.-|++....+
T Consensus 118 GGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~~ 156 (398)
T 3ez2_A 118 GGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQSS 156 (398)
T ss_dssp SSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTCH
T ss_pred CCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCCC
Confidence 89999999999988763210 1234567777765443
No 438
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=60.71 E-value=11 Score=39.60 Aligned_cols=86 Identities=15% Similarity=0.191 Sum_probs=46.2
Q ss_pred CCCcHHHHHH-HHHhhccc---CCCCCC-EEEEEEeCCcc-CHHHHHHHHHHHcCCC------CCCCCCccHHHH----H
Q 005367 2 GGVGKTTLLT-QINNKFVD---NPTDFD-YVIWVVVSKDL-QLEKIQETIRKKIGLC------NDSWKNKSLEEK----A 65 (700)
Q Consensus 2 gGiGKT~La~-~~~~~~~~---~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~~~~~------~~~~~~~~~~~~----~ 65 (700)
+|+|||+||. ++++.... ..++-+ .++++-+++.. ...++.+.+...-... .....+...... .
T Consensus 171 ~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~~~a 250 (510)
T 2ck3_A 171 RQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSG 250 (510)
T ss_dssp TTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHHHHHHHHHHH
Confidence 6999999954 56666510 012344 46677777765 4677777776532110 011111111111 1
Q ss_pred HHHHHHh--ccCcEEEEEcCCCch
Q 005367 66 QDIFKTL--SKKKFALLLDDLWER 87 (700)
Q Consensus 66 ~~l~~~l--~~~r~LlVlDdv~~~ 87 (700)
-.+.+.+ +++.+|+|+||+...
T Consensus 251 ~tiAEyfrd~G~dVLli~Dsltr~ 274 (510)
T 2ck3_A 251 CSMGEYFRDNGKHALIIYDDLSKQ 274 (510)
T ss_dssp HHHHHHHHTTTCEEEEEEETHHHH
T ss_pred HHHHHHHHHcCCcEEEEEcCHHHH
Confidence 1223333 478999999999655
No 439
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=60.30 E-value=5.2 Score=38.66 Aligned_cols=35 Identities=26% Similarity=0.424 Sum_probs=22.4
Q ss_pred CCCCcHHHHHHHHHhhcccCCC-------CCCEEEEEEeCCc
Q 005367 1 MGGVGKTTLLTQINNKFVDNPT-------DFDYVIWVVVSKD 35 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~-------~f~~~~wv~~~~~ 35 (700)
.+|+||||||+.++........ .-..+++++..+.
T Consensus 38 ~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~ 79 (279)
T 1nlf_A 38 PGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP 79 (279)
T ss_dssp STTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC
T ss_pred CCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC
Confidence 4799999999999875522110 0235667776554
No 440
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=60.29 E-value=3.7 Score=38.08 Aligned_cols=16 Identities=25% Similarity=0.160 Sum_probs=14.8
Q ss_pred CCCcHHHHHHHHHhhc
Q 005367 2 GGVGKTTLLTQINNKF 17 (700)
Q Consensus 2 gGiGKT~La~~~~~~~ 17 (700)
||+||||+|..++...
T Consensus 11 gGvGKTt~a~nLa~~l 26 (224)
T 1byi_A 11 TEVGKTVASCALLQAA 26 (224)
T ss_dssp TTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 8999999999998887
No 441
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=60.19 E-value=2.1 Score=39.42 Aligned_cols=16 Identities=38% Similarity=0.767 Sum_probs=14.6
Q ss_pred CCCcHHHHHHHHHhhc
Q 005367 2 GGVGKTTLLTQINNKF 17 (700)
Q Consensus 2 gGiGKT~La~~~~~~~ 17 (700)
.|+||||+|+.+....
T Consensus 9 ~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 9 DGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 6999999999998886
No 442
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=60.07 E-value=7.3 Score=37.96 Aligned_cols=44 Identities=18% Similarity=0.170 Sum_probs=26.5
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHHHHHHHHHHH
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIRKK 48 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 48 (700)
.+|+|||||++.++....... -..++|+.... ...++...+...
T Consensus 43 ~~G~GKTTl~~~ia~~~~~~~--G~~v~~~~~e~--~~~~~~~r~~~~ 86 (296)
T 1cr0_A 43 GSGMGKSTFVRQQALQWGTAM--GKKVGLAMLEE--SVEETAEDLIGL 86 (296)
T ss_dssp STTSSHHHHHHHHHHHHHHTS--CCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHc--CCeEEEEeCcC--CHHHHHHHHHHH
Confidence 479999999999988862221 22466776443 334444444433
No 443
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=60.05 E-value=4 Score=36.00 Aligned_cols=17 Identities=29% Similarity=0.243 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
..|+|||||+.+++...
T Consensus 12 ~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 12 YKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 36999999999999886
No 444
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=59.99 E-value=3.8 Score=39.00 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+.|+||||+++.++...
T Consensus 35 ~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 35 PSGAGKGTLCKALAESL 51 (252)
T ss_dssp CTTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 57999999999999876
No 445
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=59.66 E-value=3.8 Score=37.39 Aligned_cols=17 Identities=12% Similarity=0.321 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+.|+||||+|+.++...
T Consensus 10 ~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 10 PSASGKSSVARRVAAAL 26 (208)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 47999999999999986
No 446
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=59.55 E-value=3.6 Score=37.33 Aligned_cols=17 Identities=24% Similarity=0.302 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
.+|+|||+||.+++.+.
T Consensus 42 psGsGKStLA~~La~~g 58 (205)
T 2qmh_A 42 DSGVGKSETALELVQRG 58 (205)
T ss_dssp CCTTTTHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 47999999999999886
No 447
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=59.44 E-value=4 Score=37.14 Aligned_cols=17 Identities=35% Similarity=0.581 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+.|+|||||++.+....
T Consensus 12 psGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 12 PSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 47999999999998765
No 448
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=59.26 E-value=3.9 Score=38.85 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|+.++...
T Consensus 30 ~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 30 GTASGKSSVCAKIVQLL 46 (252)
T ss_dssp STTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999999875
No 449
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=59.10 E-value=4 Score=37.45 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
..|.|||||++.++...
T Consensus 14 ~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 14 GTASGKTTLAQALARTL 30 (211)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 36999999999999875
No 450
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=58.24 E-value=4.2 Score=42.14 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+|||++|++++...
T Consensus 58 ppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 58 PTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CTTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 58999999999999987
No 451
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=57.90 E-value=14 Score=33.47 Aligned_cols=21 Identities=14% Similarity=0.102 Sum_probs=18.3
Q ss_pred EEEEcCCCchhhhhhhcCcCC
Q 005367 78 ALLLDDLWERVDLKKIGVPLP 98 (700)
Q Consensus 78 LlVlDdv~~~~~~~~l~~~~~ 98 (700)
.+|+||+....+++.+...++
T Consensus 105 ~vII~dvR~~~Ev~~fr~~~g 125 (202)
T 3ch4_B 105 IWLVSDTRRVSDIQWFREAYG 125 (202)
T ss_dssp EEEECCCCSHHHHHHHHHHHG
T ss_pred cEEEeCCCCHHHHHHHHHhCC
Confidence 799999999999999976655
No 452
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=57.66 E-value=4.4 Score=36.89 Aligned_cols=17 Identities=35% Similarity=0.559 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
..|+||||+++.+....
T Consensus 30 ~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 30 LSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999998865
No 453
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=57.63 E-value=4.2 Score=40.35 Aligned_cols=17 Identities=29% Similarity=0.548 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+.|+|||+||..++.+.
T Consensus 48 PTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 48 ATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp STTSSHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHC
Confidence 57999999999999987
No 454
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=57.00 E-value=3.3 Score=41.93 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=24.0
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccCHH
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 39 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 39 (700)
||+||||+|..++...+ ..-..+.-|+. ...+..
T Consensus 11 GG~GKTt~a~~la~~la---~~g~~vllvd~-~~~~l~ 44 (374)
T 3igf_A 11 SGVARTKIAIAAAKLLA---SQGKRVLLAGL-AEPVLP 44 (374)
T ss_dssp BHHHHHHHHHHHHHHHH---HTTCCEEEEEC-SCSHHH
T ss_pred CCCcHHHHHHHHHHHHH---HCCCCeEEEeC-CCCChH
Confidence 89999999999988873 22345777777 444433
No 455
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=57.00 E-value=4.4 Score=37.13 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+.|+|||||++.++.-.
T Consensus 28 pnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 28 PSAVGKSTVVRCLRERI 44 (207)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 46999999999998876
No 456
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=56.39 E-value=4.7 Score=37.17 Aligned_cols=15 Identities=27% Similarity=0.339 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHHh
Q 005367 1 MGGVGKTTLLTQINN 15 (700)
Q Consensus 1 ~gGiGKT~La~~~~~ 15 (700)
+.|+||||+|+.++.
T Consensus 12 ~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 12 GIGSGKSTVANAFAD 26 (218)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999976
No 457
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=56.34 E-value=4.9 Score=39.40 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+.|+|||+||..++...
T Consensus 11 ptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 11 PTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CTTSCHHHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHhC
Confidence 57999999999999886
No 458
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=55.99 E-value=40 Score=36.35 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+.|.|||||++.++.-.
T Consensus 377 ~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 377 RSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 36999999999998765
No 459
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=55.83 E-value=4.8 Score=40.00 Aligned_cols=17 Identities=35% Similarity=0.491 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+.|+||||||+.++...
T Consensus 15 ptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 15 PTASGKTELSIEVAKKF 31 (340)
T ss_dssp STTSSHHHHHHHHHHHT
T ss_pred CCcCcHHHHHHHHHHHc
Confidence 47999999999999987
No 460
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=55.56 E-value=4.8 Score=37.29 Aligned_cols=17 Identities=47% Similarity=0.772 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+.|+|||||++.++...
T Consensus 31 psGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 31 PSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 46999999999998875
No 461
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=55.53 E-value=4 Score=43.24 Aligned_cols=17 Identities=18% Similarity=0.385 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+|||+||++++...
T Consensus 49 pPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 49 PPGIAKSLIARRLKFAF 65 (500)
T ss_dssp CSSSSHHHHHHHGGGGB
T ss_pred CchHHHHHHHHHHHHHH
Confidence 58999999999999986
No 462
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=55.52 E-value=5 Score=34.97 Aligned_cols=16 Identities=38% Similarity=0.391 Sum_probs=14.3
Q ss_pred CCCcHHHHHHHHHhhc
Q 005367 2 GGVGKTTLLTQINNKF 17 (700)
Q Consensus 2 gGiGKT~La~~~~~~~ 17 (700)
.|.|||||++.++.-.
T Consensus 42 nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 42 LGAGKTTLTRGMLQGI 57 (158)
T ss_dssp TTSSHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhC
Confidence 5999999999998875
No 463
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=55.23 E-value=5.1 Score=40.06 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
|+|+||||+|+.++...
T Consensus 32 ~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 32 SPGSGKSTIAEELCQII 48 (359)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHh
Confidence 68999999999998875
No 464
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=55.10 E-value=3.4 Score=41.42 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
.+|+|||++|+.+++..
T Consensus 53 ~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 53 DRGTGKSTAVRALAALL 69 (350)
T ss_dssp CGGGCTTHHHHHHHHHS
T ss_pred CCCccHHHHHHHHHHhC
Confidence 47999999999999876
No 465
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=54.91 E-value=5.6 Score=35.12 Aligned_cols=17 Identities=18% Similarity=0.262 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
.+|+||||+|.++..+-
T Consensus 24 ~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 24 EANIGKSELSLALIDRG 40 (181)
T ss_dssp SSSSSHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHcC
Confidence 37999999999998863
No 466
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=54.89 E-value=6.2 Score=42.94 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=23.4
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCccC
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQ 37 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~~~ 37 (700)
||+||||+|.+++...++ .-..+..|+.....+
T Consensus 17 GGvGKTT~a~~lA~~lA~---~G~rVLlvd~D~~~~ 49 (589)
T 1ihu_A 17 GGVGKTSISCATAIRLAE---QGKRVLLVSTDPASN 49 (589)
T ss_dssp TTSSHHHHHHHHHHHHHH---TTCCEEEEECCTTCC
T ss_pred CcCHHHHHHHHHHHHHHH---CCCcEEEEECCCCcC
Confidence 899999999999988732 233566676554333
No 467
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=54.88 E-value=5.3 Score=39.08 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+.|+|||+||..+++..
T Consensus 18 ptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 18 PTASGKTALAIELRKIL 34 (316)
T ss_dssp CTTSCHHHHHHHHHHHS
T ss_pred CCccCHHHHHHHHHHhC
Confidence 47999999999999986
No 468
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=54.45 E-value=5.1 Score=37.08 Aligned_cols=16 Identities=31% Similarity=0.528 Sum_probs=14.8
Q ss_pred CCCcHHHHHHHHHhhc
Q 005367 2 GGVGKTTLLTQINNKF 17 (700)
Q Consensus 2 gGiGKT~La~~~~~~~ 17 (700)
+|+|||||+.+++...
T Consensus 47 ~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 47 IGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 7999999999999885
No 469
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=54.17 E-value=5.7 Score=35.83 Aligned_cols=17 Identities=41% Similarity=0.591 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+.|+|||||++.++...
T Consensus 9 ~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 9 PPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCSSCHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHhhc
Confidence 47999999999998876
No 470
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=54.02 E-value=5.3 Score=37.01 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+.|+|||||.+.++...
T Consensus 24 psGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 24 PSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CTTSCHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhccC
Confidence 47999999999998876
No 471
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=53.83 E-value=14 Score=29.09 Aligned_cols=39 Identities=15% Similarity=0.294 Sum_probs=23.8
Q ss_pred CCCCCCceeEEEecCCCCcccccccccCCCcceEEEccCC
Q 005367 345 TIPTCPHLLTLFLNRNPLTTIAGGFFQSMPCLTVLKMSGN 384 (700)
Q Consensus 345 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~ 384 (700)
.|.+|.+|+.+.+..+ ++.+....|.+|.+|+.+.+.+.
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 4566666666666654 45555555666666666666554
No 472
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=53.47 E-value=5.5 Score=37.61 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
..|.|||||++.++...
T Consensus 33 ~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 33 GTASGKSTVCEKIMELL 49 (245)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 36999999999998864
No 473
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=53.45 E-value=5.5 Score=34.28 Aligned_cols=16 Identities=44% Similarity=0.723 Sum_probs=14.2
Q ss_pred CCCcHHHHHHHHHhhc
Q 005367 2 GGVGKTTLLTQINNKF 17 (700)
Q Consensus 2 gGiGKT~La~~~~~~~ 17 (700)
+|+|||||+.++....
T Consensus 12 ~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 12 GGVGKSALTIQLIQNH 27 (166)
T ss_dssp TTSSHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHhCc
Confidence 7999999999998764
No 474
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=53.40 E-value=5.6 Score=38.74 Aligned_cols=17 Identities=35% Similarity=0.374 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
..|+||||||+.+....
T Consensus 39 ~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 39 PQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 37999999999998876
No 475
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=53.08 E-value=5.5 Score=42.14 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=15.9
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|++++.+.
T Consensus 403 lsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 403 SLTVSREQLSIALLSTF 419 (511)
T ss_dssp TCCSCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 57999999999999998
No 476
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=52.99 E-value=11 Score=36.42 Aligned_cols=31 Identities=10% Similarity=0.105 Sum_probs=23.7
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCc
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD 35 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~ 35 (700)
||+||||+|..++...+ ..-..+.-|++.-.
T Consensus 102 gG~GKTtva~nLA~~lA---~~G~rVLLID~D~~ 132 (286)
T 3la6_A 102 PSIGMTFVCANLAAVIS---QTNKRVLLIDCDMR 132 (286)
T ss_dssp SSSSHHHHHHHHHHHHH---TTTCCEEEEECCTT
T ss_pred CCCcHHHHHHHHHHHHH---hCCCCEEEEeccCC
Confidence 89999999999999883 33346777876554
No 477
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=52.87 E-value=5.9 Score=37.27 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+.|+||||+++.+++..
T Consensus 10 ~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 10 NIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CTTSSHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 46999999999999987
No 478
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=52.71 E-value=6.3 Score=34.99 Aligned_cols=17 Identities=41% Similarity=0.610 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
..|+|||||++.+....
T Consensus 14 ~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 14 WSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 36999999999998875
No 479
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=52.51 E-value=6.1 Score=33.91 Aligned_cols=17 Identities=29% Similarity=0.430 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
.+|+|||+|+.++....
T Consensus 9 ~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 9 RPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp CTTSSHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 36999999999998764
No 480
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=52.22 E-value=6.9 Score=36.46 Aligned_cols=17 Identities=35% Similarity=0.581 Sum_probs=12.6
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+.|+||||+++.+++..
T Consensus 33 ~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 33 IDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CC---CHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999999887
No 481
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=51.77 E-value=11 Score=34.55 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+.|+||||+++.+++..
T Consensus 11 ~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 11 LEGAGKTTARNVVVETL 27 (213)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999999887
No 482
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=51.67 E-value=11 Score=35.28 Aligned_cols=29 Identities=17% Similarity=0.321 Sum_probs=20.5
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEE
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVV 31 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~ 31 (700)
+.|+||||+++.+++... ...+..+....
T Consensus 35 ~~GsGKsT~~~~l~~~l~--~~~~~~~~~~r 63 (236)
T 3lv8_A 35 LEGAGKSTAIQVVVETLQ--QNGIDHITRTR 63 (236)
T ss_dssp STTSCHHHHHHHHHHHHH--HTTCCCEEEEE
T ss_pred CCCCCHHHHHHHHHHHHH--hcCCCeeeeec
Confidence 479999999999999872 23455344443
No 483
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=51.47 E-value=6 Score=38.99 Aligned_cols=31 Identities=19% Similarity=0.081 Sum_probs=20.1
Q ss_pred CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEe
Q 005367 1 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVV 32 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~ 32 (700)
..|+|||||++.++.-.....+. ..+.+|..
T Consensus 98 ~sGsGKSTL~~~L~gll~~~~G~-~~v~~v~q 128 (312)
T 3aez_A 98 SVAVGKSTTARVLQALLARWDHH-PRVDLVTT 128 (312)
T ss_dssp CTTSCHHHHHHHHHHHHHTSTTC-CCEEEEEG
T ss_pred CCCchHHHHHHHHHhhccccCCC-CeEEEEec
Confidence 46999999999998876221111 33556653
No 484
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=51.47 E-value=6 Score=38.30 Aligned_cols=15 Identities=27% Similarity=0.685 Sum_probs=13.4
Q ss_pred CCCCcHHHHHHHHHh
Q 005367 1 MGGVGKTTLLTQINN 15 (700)
Q Consensus 1 ~gGiGKT~La~~~~~ 15 (700)
++|+||||+|+.+..
T Consensus 83 ~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 83 ISGSGKSSVAQRLKN 97 (281)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999983
No 485
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=51.01 E-value=6.6 Score=35.23 Aligned_cols=17 Identities=35% Similarity=0.567 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
.+|+|||||.+.+....
T Consensus 37 ~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 37 DSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp CTTSSHHHHHHHHHHSC
T ss_pred cCCCCHHHHHHHHhcCC
Confidence 37999999999998765
No 486
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=50.61 E-value=6.9 Score=37.64 Aligned_cols=31 Identities=16% Similarity=0.147 Sum_probs=23.2
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCc
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD 35 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~~ 35 (700)
||+||||+|..++...+ ..-..+.-|++.-.
T Consensus 92 gG~GKTt~a~nLA~~lA---~~G~rVLLID~D~~ 122 (271)
T 3bfv_A 92 PGAGKSTIAANLAVAYA---QAGYKTLIVDGDMR 122 (271)
T ss_dssp TTSSHHHHHHHHHHHHH---HTTCCEEEEECCSS
T ss_pred CCCcHHHHHHHHHHHHH---hCCCeEEEEeCCCC
Confidence 89999999999998873 23346777776543
No 487
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=50.40 E-value=9.4 Score=34.74 Aligned_cols=17 Identities=12% Similarity=0.268 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+.|+||||+|+.++++.
T Consensus 14 ~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 14 EFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CTTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 57999999999999997
No 488
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=49.40 E-value=7.1 Score=37.26 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+|||.+|.++++..
T Consensus 112 ppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 112 PATTGKTNIAEAIAHTV 128 (267)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhhh
Confidence 58999999999999874
No 489
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=49.37 E-value=6.9 Score=34.88 Aligned_cols=16 Identities=44% Similarity=0.723 Sum_probs=14.3
Q ss_pred CCCcHHHHHHHHHhhc
Q 005367 2 GGVGKTTLLTQINNKF 17 (700)
Q Consensus 2 gGiGKT~La~~~~~~~ 17 (700)
+|+|||||+.++....
T Consensus 30 ~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 30 GGVGKSALTIQLIQNH 45 (190)
T ss_dssp TTSSHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHcCC
Confidence 7999999999998764
No 490
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=48.86 E-value=6.2 Score=35.11 Aligned_cols=16 Identities=50% Similarity=0.611 Sum_probs=14.0
Q ss_pred CCCCcHHHHHHHHHhh
Q 005367 1 MGGVGKTTLLTQINNK 16 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~ 16 (700)
.+|+|||||++.++..
T Consensus 10 ~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 10 NTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CTTSSHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHhcC
Confidence 3799999999999874
No 491
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=48.68 E-value=7.3 Score=33.85 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=14.4
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
.+|+|||||..++....
T Consensus 11 ~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 11 NPNVGKSTIFNALTGEN 27 (165)
T ss_dssp STTSSHHHHHHHHHCCS
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 37999999999998753
No 492
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=48.45 E-value=9.9 Score=37.12 Aligned_cols=30 Identities=13% Similarity=0.164 Sum_probs=22.8
Q ss_pred CCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC
Q 005367 2 GGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK 34 (700)
Q Consensus 2 gGiGKT~La~~~~~~~~~~~~~f~~~~wv~~~~ 34 (700)
||+||||+|..++...+. .-..+.-|++..
T Consensus 114 gG~GKTtva~nLA~~lA~---~G~rVLLID~D~ 143 (299)
T 3cio_A 114 PDSGKTFVSSTLAAVIAQ---SDQKVLFIDADL 143 (299)
T ss_dssp SSSCHHHHHHHHHHHHHH---TTCCEEEEECCT
T ss_pred CCCChHHHHHHHHHHHHh---CCCcEEEEECCC
Confidence 899999999999988732 234577777654
No 493
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=48.38 E-value=7.7 Score=35.68 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
.+|+|||||+.+++...
T Consensus 38 ~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 38 AIGSGKTLLIERTIERI 54 (221)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 37999999999999886
No 494
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=48.21 E-value=7.2 Score=41.56 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|.||||+|++++...
T Consensus 43 lpGSGKSTia~~La~~L 59 (520)
T 2axn_A 43 LPARGKTYISKKLTRYL 59 (520)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999998876
No 495
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=48.18 E-value=7.6 Score=35.03 Aligned_cols=17 Identities=35% Similarity=0.567 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
.+|+|||||.+.++...
T Consensus 13 ~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 13 DSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp STTSSHHHHHHHHHHSC
T ss_pred cCCCCHHHHHHHHhcCC
Confidence 36999999999998864
No 496
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=48.01 E-value=7.6 Score=34.47 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=14.0
Q ss_pred CCCCcHHHHHHHHHhh
Q 005367 1 MGGVGKTTLLTQINNK 16 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~ 16 (700)
.+|+|||||...++..
T Consensus 15 ~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 15 NPNVGKSTIFNALTGE 30 (188)
T ss_dssp STTSSHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHhCC
Confidence 3799999999999875
No 497
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=47.98 E-value=7.8 Score=33.47 Aligned_cols=16 Identities=25% Similarity=0.596 Sum_probs=14.2
Q ss_pred CCCcHHHHHHHHHhhc
Q 005367 2 GGVGKTTLLTQINNKF 17 (700)
Q Consensus 2 gGiGKT~La~~~~~~~ 17 (700)
+|+|||||+.++....
T Consensus 14 ~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 14 GAVGKSSMIQRYCKGI 29 (168)
T ss_dssp TTSSHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHcCC
Confidence 6999999999998764
No 498
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=47.49 E-value=7.5 Score=40.86 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
++|+||||+|++++...
T Consensus 47 lpGsGKSTia~~La~~l 63 (469)
T 1bif_A 47 LPARGKTYISKKLTRYL 63 (469)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999999886
No 499
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=47.32 E-value=46 Score=35.93 Aligned_cols=17 Identities=35% Similarity=0.477 Sum_probs=14.5
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
+.|.|||||++.++.-.
T Consensus 377 ~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 377 ETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp SSSSSHHHHHHTTTTSS
T ss_pred CCCCCHHHHHHHHhCCc
Confidence 36999999999988765
No 500
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=47.30 E-value=7.9 Score=38.21 Aligned_cols=17 Identities=24% Similarity=0.220 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHhhc
Q 005367 1 MGGVGKTTLLTQINNKF 17 (700)
Q Consensus 1 ~gGiGKT~La~~~~~~~ 17 (700)
..|+||||+|+.+....
T Consensus 100 psGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 100 SVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998776
Done!