Query 005368
Match_columns 699
No_of_seqs 353 out of 825
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 23:22:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005368.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005368hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 4.9E-29 1.7E-33 232.1 13.7 114 120-233 6-121 (130)
2 4i1k_A B3 domain-containing tr 99.6 1.4E-15 4.6E-20 144.5 10.2 97 124-230 45-143 (146)
3 1yel_A AT1G16640; CESG, protei 99.4 1E-12 3.5E-17 117.2 9.0 92 126-228 9-100 (104)
4 1wmh_B Partitioning defective- 95.2 0.071 2.4E-06 46.7 8.2 74 583-663 5-84 (86)
5 1na6_A Ecorii, restriction end 95.0 0.03 1E-06 60.8 6.8 92 124-216 17-122 (404)
6 1vd2_A Protein kinase C, IOTA 94.6 0.074 2.5E-06 46.7 7.0 60 583-648 5-64 (89)
7 1q1o_A Cell division control p 90.8 0.71 2.4E-05 41.3 7.7 75 583-657 4-85 (98)
8 2kkc_A Sequestosome-1; P62, PB 88.9 0.59 2E-05 42.0 5.7 64 584-653 5-83 (102)
9 2ktr_A Sequestosome-1; autopha 84.7 1.6 5.4E-05 40.2 6.2 63 583-653 19-98 (117)
10 1oey_A P67-PHOX, neutrophil cy 84.5 3.4 0.00012 35.8 7.9 70 586-663 7-79 (83)
11 1wj6_A KIAA0049 protein, RSGI 76.3 7.1 0.00024 35.1 7.2 64 586-658 16-79 (101)
12 1pqs_A Cell division control p 75.2 4.3 0.00015 34.6 5.4 59 599-657 5-64 (77)
13 2bkf_A Zinc-finger protein NBR 74.4 7.9 0.00027 33.9 6.9 54 586-646 8-61 (87)
14 1oey_J P40-PHOX, neutrophil cy 69.5 4 0.00014 36.9 3.9 41 601-648 28-68 (107)
15 3cgm_A SLYD, peptidyl-prolyl C 58.9 22 0.00076 33.6 7.3 98 206-319 3-110 (158)
16 3p8d_A Medulloblastoma antigen 48.0 24 0.00082 29.4 4.8 55 286-357 3-57 (67)
17 2kfw_A FKBP-type peptidyl-prol 41.3 28 0.00096 34.2 5.0 100 206-319 3-114 (196)
18 2k8i_A SLYD, peptidyl-prolyl C 39.9 83 0.0029 30.0 8.0 100 206-319 3-114 (171)
19 2kr7_A FKBP-type peptidyl-prol 39.4 91 0.0031 28.9 8.0 103 203-319 4-119 (151)
20 3qii_A PHD finger protein 20; 38.7 37 0.0013 29.6 4.7 55 287-358 19-73 (85)
21 1e8p_A Endoglucanase, dockerin 35.5 10 0.00035 29.6 0.6 14 631-644 19-32 (46)
22 1mhn_A SurviVal motor neuron p 33.3 39 0.0013 26.6 3.8 29 288-319 2-30 (59)
23 3o27_A Putative uncharacterize 32.4 30 0.001 29.0 2.9 35 198-232 31-66 (68)
24 3s6w_A Tudor domain-containing 30.5 43 0.0015 25.8 3.5 28 289-319 1-28 (54)
25 4a4f_A SurviVal of motor neuro 30.0 47 0.0016 26.7 3.8 43 287-340 6-48 (64)
26 2e63_A KIAA1787 protein; struc 28.9 35 0.0012 32.8 3.3 51 171-227 86-139 (170)
27 2equ_A PHD finger protein 20-l 27.6 52 0.0018 27.6 3.8 40 287-339 7-46 (74)
28 2jng_A Cullin-7, CUL-7; P53 bi 26.1 66 0.0023 29.1 4.3 69 278-358 10-78 (105)
29 4dt4_A FKBP-type 16 kDa peptid 24.1 1.7E+02 0.0057 28.0 7.1 103 205-319 24-138 (169)
30 2yue_A Protein neuralized; str 23.4 64 0.0022 30.9 4.0 21 207-227 107-127 (168)
31 1g5v_A SurviVal motor neuron p 23.2 68 0.0023 27.8 3.8 43 287-340 8-50 (88)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.96 E-value=4.9e-29 Score=232.06 Aligned_cols=114 Identities=26% Similarity=0.445 Sum_probs=104.7
Q ss_pred CCCCceeeEEEecCccCCCCCCceEEehhhhcccCCCCCCCCCCCCeEEEEeeCCCCeEEEEEEecCCCceeeecccccc
Q 005368 120 PPKQTVHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMTLATPTQELAAKDLHGYEWRFKHIFRGQPRRHLLTTGWST 199 (699)
Q Consensus 120 ~~~~~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~fP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yr~~~rr~lLTtGWs~ 199 (699)
..++...+|+|+||+|||++++||+||+++|+.+||.++..+..++++|.++|.+|++|+|||+||+++++|+|++||+.
T Consensus 6 ~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~ 85 (130)
T 1wid_A 6 SGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSR 85 (130)
T ss_dssp --CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHH
T ss_pred CCCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHH
Confidence 44567789999999999999999999999999999999987777899999999999999999999999999999999999
Q ss_pred cccccCCCCCCEEEEEeCCC--CcEEEEEEeccccC
Q 005368 200 FVTSKRLVAGDAFVFLRGEN--GELRVGVRRLAHQQ 233 (699)
Q Consensus 200 FV~~K~L~aGD~VvF~R~~~--G~l~vGiRRa~~~~ 233 (699)
||++|+|++||.|+|++.++ +.|+|++||+....
T Consensus 86 FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 86 FVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp HHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred HHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence 99999999999999999764 67999999998754
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.61 E-value=1.4e-15 Score=144.46 Aligned_cols=97 Identities=20% Similarity=0.252 Sum_probs=84.4
Q ss_pred ceeeEEEecCccCCCCCCceEEehhhhcccCCCCCCCCCCCCeEEEEeeCCCCeEEEEEEecCCCceeeecccccccccc
Q 005368 124 TVHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMTLATPTQELAAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTS 203 (699)
Q Consensus 124 ~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~fP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yr~~~rr~lLTtGWs~FV~~ 203 (699)
...+|.|+||+||+.+..+|.||++.|+.+||..+ +.+.+.|. |+.|.|+|+|++. ++.|++||..||++
T Consensus 45 ~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~d 114 (146)
T 4i1k_A 45 TNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTLE 114 (146)
T ss_dssp SSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHHH
T ss_pred CCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCC-------eEEEEEEC-CcEEEEEEEEeCC--cEEECCchHHHHHH
Confidence 34689999999999877789999999999999653 46778887 6999999999974 78999999999999
Q ss_pred cCCCCCCEEEEEeCCCC--cEEEEEEecc
Q 005368 204 KRLVAGDAFVFLRGENG--ELRVGVRRLA 230 (699)
Q Consensus 204 K~L~aGD~VvF~R~~~G--~l~vGiRRa~ 230 (699)
++|++||.++|...++. .+.|.|-|+.
T Consensus 115 n~L~~GD~cvFeli~~~~~~f~V~IfR~~ 143 (146)
T 4i1k_A 115 NNLGEGDVCVFELLRTRDFVLKVTAFRVN 143 (146)
T ss_dssp TTCCTTCEEEEEECSSSSCEEEEEEECCC
T ss_pred cCCCCCCEEEEEEecCCceEEEEEEEecc
Confidence 99999999999987765 5788888764
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.37 E-value=1e-12 Score=117.18 Aligned_cols=92 Identities=20% Similarity=0.359 Sum_probs=78.8
Q ss_pred eeEEEecCccCCCCCCceEEehhhhcccCCCCCCCCCCCCeEEEEeeCCCCeEEEEEEecCCCceeeecccccccccccC
Q 005368 126 HSFCKILTASDTSTHGGFSVLRKHATECLPPLDMTLATPTQELAAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKR 205 (699)
Q Consensus 126 ~~F~K~LT~SDv~~~grfsVPk~~Ae~~fP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yr~~~rr~lLTtGWs~FV~~K~ 205 (699)
..|.|+|+++|. ..++.||++.++.+.+.+ ...+.++|..|+.|++++.+++ .+++|+.||..||++++
T Consensus 9 p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~-------~~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~~~ 77 (104)
T 1yel_A 9 VQFMKPFISEKS--SKSLEIPLGFNEYFPAPF-------PITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKDNN 77 (104)
T ss_dssp EEEEEECCHHHH--TTCEECCHHHHTTCCCCC-------CSEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHHHT
T ss_pred CCEEEEECCCCc--cceEECCHHHHHhcCccC-------CCEEEEECCCCCEEEEEEEEEC--CcEEEccChHHHHHHcC
Confidence 589999999994 569999999998765543 2468999999999999999874 47899999999999999
Q ss_pred CCCCCEEEEEeCCCCcEEEEEEe
Q 005368 206 LVAGDAFVFLRGENGELRVGVRR 228 (699)
Q Consensus 206 L~aGD~VvF~R~~~G~l~vGiRR 228 (699)
|++||.++|...++..+.|-|=+
T Consensus 78 L~~GD~lvF~~~~~~~f~V~If~ 100 (104)
T 1yel_A 78 LEDGKYLQFIYDRDRTFYVIIYG 100 (104)
T ss_dssp CCTTCEEEEEECSSSEEEEEEEC
T ss_pred CCCCCEEEEEEcCCCeEEEEEEC
Confidence 99999999999888887776644
No 4
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=95.16 E-value=0.071 Score=46.70 Aligned_cols=74 Identities=14% Similarity=0.230 Sum_probs=55.7
Q ss_pred CCCeeEEEecCeeeeeeecCCCCCChHHHHHHHHHHHhhccccCCCCCceeEeecCCCCeEEccCCChHHHHh---cce-
Q 005368 583 TRTRTKVQMQGIAVGRAVDLTALKGYDDLFDELEKMFEIQGQLRPRDKWAVVFTDDEGDMMLAGDDQWPEFCK---MVK- 658 (699)
Q Consensus 583 ~~~~vKV~meG~~vGR~vDL~~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~PW~~F~~---~vk- 658 (699)
+.--||.+-+++--==.+|-+...+|++|+..|+++|.+. .-.+.|.|+|.+||++-+-++ ++|.+ ++|
T Consensus 5 ~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~-----~~~f~i~Y~D~dGDLlpInnD--dnl~~Al~~a~p 77 (86)
T 1wmh_B 5 SIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIP-----GLDVLLGYTDAHGDLLPLTND--DSLHRALASGPP 77 (86)
T ss_dssp CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCT-----TCCCEEEEECTTSCEEECCSH--HHHHHHTTSSSS
T ss_pred CEEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCC-----CCCEEEEEECCCCCEeeecCH--HHHHHHHHhCCC
Confidence 3456788888864333667677899999999999999853 345899999999999998877 67644 444
Q ss_pred --eEEEe
Q 005368 659 --KIFIY 663 (699)
Q Consensus 659 --rl~I~ 663 (699)
||+|-
T Consensus 78 lLRl~Iq 84 (86)
T 1wmh_B 78 PLRLLVQ 84 (86)
T ss_dssp CEEEEEE
T ss_pred cEEEEEE
Confidence 55553
No 5
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=95.04 E-value=0.03 Score=60.79 Aligned_cols=92 Identities=16% Similarity=0.221 Sum_probs=65.8
Q ss_pred ceeeEEEecCccCCCCCC----ceEEehhhhcccCCCCCC-CCCCCCeEEEE--eeCCCCeEEEEEEecC------CCce
Q 005368 124 TVHSFCKILTASDTSTHG----GFSVLRKHATECLPPLDM-TLATPTQELAA--KDLHGYEWRFKHIFRG------QPRR 190 (699)
Q Consensus 124 ~~~~F~K~LT~SDv~~~g----rfsVPk~~Ae~~fP~Ld~-~~~~p~q~L~~--~D~~G~~W~Fr~~yr~------~~rr 190 (699)
..+.|+|.|++.|++..| +|.+|+.....+||.|+. ....|.+.+.+ .|...-++.++.+|.+ ++..
T Consensus 17 ~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnE 96 (404)
T 1na6_A 17 NYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNE 96 (404)
T ss_dssp SEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCE
T ss_pred cchheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCc
Confidence 357899999999998764 799999768999999983 34455555443 4444455599999997 3346
Q ss_pred eeeccccc-ccccccCCCCCCEEEEEe
Q 005368 191 HLLTTGWS-TFVTSKRLVAGDAFVFLR 216 (699)
Q Consensus 191 ~lLTtGWs-~FV~~K~L~aGD~VvF~R 216 (699)
|.||. |. .+.-.....+||.++|-+
T Consensus 97 yRLt~-~~~~~~~~~~a~~GDLlvia~ 122 (404)
T 1na6_A 97 KRITR-WGRGSPLQDPENTGALTLLAF 122 (404)
T ss_dssp EEEEC-CCTTSGGGCGGGTTCEEEEEE
T ss_pred eEEee-cCCCCcccccCCCCCEEEEEE
Confidence 88872 22 234446778999988874
No 6
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=94.63 E-value=0.074 Score=46.75 Aligned_cols=60 Identities=17% Similarity=0.310 Sum_probs=46.0
Q ss_pred CCCeeEEEecCeeeeeeecCCCCCChHHHHHHHHHHHhhccccCCCCCceeEeecCCCCeEEccCC
Q 005368 583 TRTRTKVQMQGIAVGRAVDLTALKGYDDLFDELEKMFEIQGQLRPRDKWAVVFTDDEGDMMLAGDD 648 (699)
Q Consensus 583 ~~~~vKV~meG~~vGR~vDL~~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~ 648 (699)
+..-||++-+|.-+-=.|+. --+|++|..+|.++|.+. ....+++.|.|.|||+.-+-.+
T Consensus 5 ~~vkvK~~~~gdi~~~~v~~--~i~~~~L~~kv~~~~~~~----~~~~f~lky~DEeGD~itisSd 64 (89)
T 1vd2_A 5 SQVRVKAYYRGDIMITHFEP--SISFEGLCNEVRDMCSFD----NEQLFTMKWIDEEGDPCTVSSQ 64 (89)
T ss_dssp SCEEEEEESSSCEEEEEECT--TCCHHHHHHHHHHHTTCC----SSCCEEEEECCSSSCCEECCSH
T ss_pred CeEEEEEEeCCeEEEEECCC--CCCHHHHHHHHHHHhCCC----CCCeEEEEEECCCCCcccccCH
Confidence 34578999999744334444 569999999999999975 2455899999999998766544
No 7
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=90.83 E-value=0.71 Score=41.29 Aligned_cols=75 Identities=12% Similarity=0.220 Sum_probs=54.0
Q ss_pred CCCeeEEEecCee----e--eeeecCCCCCChHHHHHHHHHHHhhccccCCCCCceeEeecCCCCeEEccC-CChHHHHh
Q 005368 583 TRTRTKVQMQGIA----V--GRAVDLTALKGYDDLFDELEKMFEIQGQLRPRDKWAVVFTDDEGDMMLAGD-DQWPEFCK 655 (699)
Q Consensus 583 ~~~~vKV~meG~~----v--GR~vDL~~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD-~PW~~F~~ 655 (699)
+.-.|||+-++.. + -|.|=...--+|++|+.++.+=|.+.-.-.-....+|-|+|.|||+..+++ +=|++-+.
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~Vtl~sddDl~~A~e 83 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKE 83 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCEEEECSHHHHHHHHH
T ss_pred ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCCEEEEcCHHHHHHHHH
Confidence 3457888877421 2 377777788899999999999999861101124468999999999977664 56777777
Q ss_pred cc
Q 005368 656 MV 657 (699)
Q Consensus 656 ~v 657 (699)
++
T Consensus 84 ~~ 85 (98)
T 1q1o_A 84 ML 85 (98)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 8
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=88.89 E-value=0.59 Score=42.00 Aligned_cols=64 Identities=14% Similarity=0.223 Sum_probs=45.9
Q ss_pred CCeeEEEecCe----eeeeeecCCC-----------CCChHHHHHHHHHHHhhccccCCCCCceeEeecCCCCeEEccCC
Q 005368 584 RTRTKVQMQGI----AVGRAVDLTA-----------LKGYDDLFDELEKMFEIQGQLRPRDKWAVVFTDDEGDMMLAGDD 648 (699)
Q Consensus 584 ~~~vKV~meG~----~vGR~vDL~~-----------~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~ 648 (699)
..-||++..|. .-=|.+-|.. ..+|++|...+.++|.--. ..++.|.|.|.|||+.-+.++
T Consensus 5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~----~~~f~l~Y~DedGDlItiSsD 80 (102)
T 2kkc_A 5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALR----PGGFQAHYRAERGDLVAFSSD 80 (102)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSC----SSCEEEEEECTTCCEEEECSH
T ss_pred eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccC----CCcEEEEEECCCCCEEEecCH
Confidence 45789999752 2335544432 2489999999999996211 345999999999999888776
Q ss_pred ChHHH
Q 005368 649 QWPEF 653 (699)
Q Consensus 649 PW~~F 653 (699)
+++
T Consensus 81 --eEL 83 (102)
T 2kkc_A 81 --EEL 83 (102)
T ss_dssp --HHH
T ss_pred --HHH
Confidence 554
No 9
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=84.74 E-value=1.6 Score=40.20 Aligned_cols=63 Identities=14% Similarity=0.320 Sum_probs=46.0
Q ss_pred CCCeeEEEecC-----eeeeeeecCC-----------CCCChHHHHHHHHHHHh-hccccCCCCCceeEeecCCCCeEEc
Q 005368 583 TRTRTKVQMQG-----IAVGRAVDLT-----------ALKGYDDLFDELEKMFE-IQGQLRPRDKWAVVFTDDEGDMMLA 645 (699)
Q Consensus 583 ~~~~vKV~meG-----~~vGR~vDL~-----------~~~sY~eL~~~L~~MF~-~~g~l~~~~~~~v~Y~D~eGD~mlv 645 (699)
...-||++..| ..| |.+-|. ...+|++|...+.++|. +. ...|.|.|.|.|||+.-+
T Consensus 19 ~~l~vKayl~~~~~~~~EI-RRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~-----~~~f~l~YkDEdGDlItI 92 (117)
T 2ktr_A 19 GSLTVKAYLLGKEEAAREI-RRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALR-----PGGFQAHYRAERGDLVAF 92 (117)
T ss_dssp -CEEEEEEEECSSSCEEEE-EEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSC-----SSCEEEEEECTTCCEEEE
T ss_pred ccEEEEEEEecCCCCCCcE-EEEEeccCCCccccccccCCCHHHHHHHHHHHccccC-----CCcEEEEEECCCCCEEEe
Confidence 45679999974 334 444443 24699999999999995 43 235999999999999887
Q ss_pred cCCChHHH
Q 005368 646 GDDQWPEF 653 (699)
Q Consensus 646 GD~PW~~F 653 (699)
..+ +++
T Consensus 93 SsD--eEL 98 (117)
T 2ktr_A 93 SSD--EEL 98 (117)
T ss_dssp CSH--HHH
T ss_pred cCH--HHH
Confidence 766 544
No 10
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=84.51 E-value=3.4 Score=35.85 Aligned_cols=70 Identities=14% Similarity=0.198 Sum_probs=56.6
Q ss_pred eeEEEecCeeeeeeecCCCCCChHHHHHHHHHHHhhccccCCCCCceeEeec-CCCCeEEccCCChHHHHhcce--eEEE
Q 005368 586 RTKVQMQGIAVGRAVDLTALKGYDDLFDELEKMFEIQGQLRPRDKWAVVFTD-DEGDMMLAGDDQWPEFCKMVK--KIFI 662 (699)
Q Consensus 586 ~vKV~meG~~vGR~vDL~~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D-~eGD~mlvGD~PW~~F~~~vk--rl~I 662 (699)
-|||+-+ +--.|....=-+|.+|...|.+=+.+.++- -++-|.| .+|.+++.+|.=++.-..-|+ ||++
T Consensus 7 ~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~~~~-----~~LsYk~~~s~~~vi~~d~dl~~aw~~~~n~~LtL 78 (83)
T 1oey_A 7 TLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELRLEH-----TKLSYRPRDSNELVPLSEDSMKDAWGQVKNYCLTL 78 (83)
T ss_dssp EEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCCGGG-----CCEEECCTTCSSCEECCTTTHHHHHTTCBTTEEEE
T ss_pred EEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCCCcce-----eEEEeeCCCCCCeeccChHHHHHHHHhccCCcEEE
Confidence 4677776 677888888889999999999999875432 3788999 688888999999999888855 6776
Q ss_pred e
Q 005368 663 Y 663 (699)
Q Consensus 663 ~ 663 (699)
+
T Consensus 79 ~ 79 (83)
T 1oey_A 79 W 79 (83)
T ss_dssp E
T ss_pred E
Confidence 5
No 11
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=76.25 E-value=7.1 Score=35.11 Aligned_cols=64 Identities=13% Similarity=0.183 Sum_probs=48.4
Q ss_pred eeEEEecCeeeeeeecCCCCCChHHHHHHHHHHHhhccccCCCCCceeEeecCCCCeEEccCCChHHHHhcce
Q 005368 586 RTKVQMQGIAVGRAVDLTALKGYDDLFDELEKMFEIQGQLRPRDKWAVVFTDDEGDMMLAGDDQWPEFCKMVK 658 (699)
Q Consensus 586 ~vKV~meG~~vGR~vDL~~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~PW~~F~~~vk 658 (699)
-.||.-.|+..==-|.-..--++++|...+..+|++. .++|.|.|.|||-.-| .-+.+|-+.+|
T Consensus 16 ~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~-------~~~IkY~DEenD~V~i--~Sq~E~eEAlk 79 (101)
T 1wj6_A 16 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN-------TIQIKYLDEENEEVSI--NSQGEYEEALK 79 (101)
T ss_dssp EEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCS-------SBCCEEECTTSCEECC--CSHHHHHHHHH
T ss_pred EEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCC-------ceEEEEecCCCCEEEE--ecHHHHHHHHH
Confidence 4799999975433464445678999999999999985 3599999999999887 44566644443
No 12
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=75.19 E-value=4.3 Score=34.61 Aligned_cols=59 Identities=17% Similarity=0.357 Sum_probs=42.3
Q ss_pred eecCCCCCChHHHHHHHHHHHhhccccCCCCCceeEeecCCCCeEEcc-CCChHHHHhcc
Q 005368 599 AVDLTALKGYDDLFDELEKMFEIQGQLRPRDKWAVVFTDDEGDMMLAG-DDQWPEFCKMV 657 (699)
Q Consensus 599 ~vDL~~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvG-D~PW~~F~~~v 657 (699)
.|=...--+|++|+.++.+=|.+.-.........+-|+|.|||+...+ |+=|++-+.++
T Consensus 5 ~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~ 64 (77)
T 1pqs_A 5 TLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEML 64 (77)
T ss_dssp EEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEEECCSTTHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHHH
Confidence 344455568999999999999864111113557899999999987665 55688777765
No 13
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=74.44 E-value=7.9 Score=33.94 Aligned_cols=54 Identities=11% Similarity=0.162 Sum_probs=42.0
Q ss_pred eeEEEecCeeeeeeecCCCCCChHHHHHHHHHHHhhccccCCCCCceeEeecCCCCeEEcc
Q 005368 586 RTKVQMQGIAVGRAVDLTALKGYDDLFDELEKMFEIQGQLRPRDKWAVVFTDDEGDMMLAG 646 (699)
Q Consensus 586 ~vKV~meG~~vGR~vDL~~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvG 646 (699)
-.||.-.|+..==-|.-..--++++|...+..+|++. .++|.|.|.|||-.-|-
T Consensus 8 ~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~-------~~~ikY~DEenD~v~i~ 61 (87)
T 2bkf_A 8 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN-------TIQIKYLDEENEEVSIN 61 (87)
T ss_dssp EEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS-------SEEEEEECTTSCEEEEC
T ss_pred EEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC-------ceEEEEEcCCCCEEEEe
Confidence 4688999975332354444678999999999999985 36999999999987664
No 14
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=69.55 E-value=4 Score=36.91 Aligned_cols=41 Identities=27% Similarity=0.421 Sum_probs=33.7
Q ss_pred cCCCCCChHHHHHHHHHHHhhccccCCCCCceeEeecCCCCeEEccCC
Q 005368 601 DLTALKGYDDLFDELEKMFEIQGQLRPRDKWAVVFTDDEGDMMLAGDD 648 (699)
Q Consensus 601 DL~~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~ 648 (699)
||+.--.|++|+....+-|.- .+-.+-|+|.|||+.-+=|+
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~-------~DIaLNYrD~eGDLIrildd 68 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQR-------EDIALNYRDAEGDLVRLLSD 68 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCC-------SSEEEEEECTTSCEEECCSH
T ss_pred ccccCCCHHHHHHHHHHHhcc-------cceeeeeecCCCCEEEEcch
Confidence 788899999999999999983 34588899999998555444
No 15
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=58.93 E-value=22 Score=33.60 Aligned_cols=98 Identities=14% Similarity=0.131 Sum_probs=62.9
Q ss_pred CCCCCEEEE-EeC-CCCcEEEEEEeccccCCCCCCcccccCccccchHHHHHHHHhcCCcEEEEEecCC------C--cc
Q 005368 206 LVAGDAFVF-LRG-ENGELRVGVRRLAHQQSSMPSSVISSQSMHLGVLATAAHAVKTSTLFIVYYKPRT------S--QF 275 (699)
Q Consensus 206 L~aGD~VvF-~R~-~~G~l~vGiRRa~~~~~~~p~sv~~~~sm~~gvla~A~~a~~tg~~F~V~Y~PR~------s--eF 275 (699)
.+.||.|.+ |+. .+|+.+-.-. . ... +....+-.| +.+|..-...|..++|.--|.. . -+
T Consensus 3 i~~gd~V~v~Y~g~~dG~~fdss~-~-~f~-------~G~g~vipG-~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~~~lv~ 72 (158)
T 3cgm_A 3 VGQDKVVTIRYTLQVEGEVLDQGE-L-SYL-------HGHRNLIPG-LEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQ 72 (158)
T ss_dssp CCTTEEEEEEEEEEETTEEEEEEE-E-EEE-------TTSSSSCHH-HHHHHTTCBTTCEEEEEECGGGTTCCCCGGGEE
T ss_pred CCCCCEEEEEEEEEECCEEEEeeE-E-EEE-------ECCCCcChH-HHHHHcCCCCCCEEEEEECcHHHcCCCCcceEE
Confidence 568898876 332 5777665443 1 110 111122223 4667777788999998886643 1 67
Q ss_pred eeeHHHHHHHhccCCccCcEEEEEeecCCCCCceeeeEEEeecc
Q 005368 276 IIGLNKYLEAVHHCFSVGMRFKMRFEGEDSPERRFTGTIVGVGD 319 (699)
Q Consensus 276 vV~~~~y~~A~~~~w~~GmRFkM~fE~eDs~~~~~~GTI~~v~~ 319 (699)
.|+++.+... ..|.+||+|.+. +++- +.+.|+|+.|.+
T Consensus 73 ~v~~~~f~~~--~~~~~G~~~~~~--~~~G--~~~~~~V~~v~~ 110 (158)
T 3cgm_A 73 VVPLSAFPED--AEVVPGAQFYAQ--DMEG--NPMPLTVVAVEG 110 (158)
T ss_dssp EEEGGGSCTT--SCCCTTCEEEEE--ETTT--EEEEEEEEEEET
T ss_pred EEEHHHCCCC--CCCccCCEEEEE--CCCC--CEEEEEEEEECC
Confidence 8888887532 589999999854 4442 567899999976
No 16
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=48.00 E-value=24 Score=29.42 Aligned_cols=55 Identities=9% Similarity=0.251 Sum_probs=40.1
Q ss_pred hccCCccCcEEEEEeecCCCCCceeeeEEEeeccCCCCCCCCCcceeeeeccCCCCCCCCCccccCcccccC
Q 005368 286 VHHCFSVGMRFKMRFEGEDSPERRFTGTIVGVGDFSEQWPGSKWRSLKIQWDEPATVQRPERVSPWEIEPFV 357 (699)
Q Consensus 286 ~~~~w~~GmRFkM~fE~eDs~~~~~~GTI~~v~~~dp~wp~S~WR~L~V~WDe~~~~~~~~RVSPWeIEp~~ 357 (699)
|-..|.+|+++-.++ +|- ++|-++|.+|.. + ....|..++.. .+.|..=+|.|+.
T Consensus 3 ~~~~~~vGd~vmArW-~D~---~yYpA~I~si~~-------~--~~Y~V~F~dG~----~etvk~~~ikp~~ 57 (67)
T 3p8d_A 3 MSSEFQINEQVLACW-SDC---RFYPAKVTAVNK-------D--GTYTVKFYDGV----VQTVKHIHVKAFS 57 (67)
T ss_dssp --CCCCTTCEEEEEC-TTS---CEEEEEEEEECT-------T--SEEEEEETTSC----EEEEEGGGEEECC
T ss_pred cCcccccCCEEEEEc-CCC---CEeeEEEEEECC-------C--CeEEEEEeCCc----eEEEeHHHcccCC
Confidence 456899999999999 443 899999999974 2 56899999933 4556655665543
No 17
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=41.33 E-value=28 Score=34.19 Aligned_cols=100 Identities=20% Similarity=0.184 Sum_probs=62.1
Q ss_pred CCCCCEEEE-Ee--CCCCcEEEEEEeccccCCCCCCccc-ccCccccchHHHHHHHHhcCCcEEEEEecCC------C--
Q 005368 206 LVAGDAFVF-LR--GENGELRVGVRRLAHQQSSMPSSVI-SSQSMHLGVLATAAHAVKTSTLFIVYYKPRT------S-- 273 (699)
Q Consensus 206 L~aGD~VvF-~R--~~~G~l~vGiRRa~~~~~~~p~sv~-~~~sm~~gvla~A~~a~~tg~~F~V~Y~PR~------s-- 273 (699)
.+.||.|.+ |+ ..+|+.+-.-+. ..|...+ ....+-. -+.+|..-...|..++|..-|-. .
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~------~~P~~f~lG~g~vip-G~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~~l 75 (196)
T 2kfw_A 3 VAKDLVVSLAYQVRTEDGVLVDESPV------SAPLDYLHGHGSLIS-GLETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (196)
T ss_dssp CCSSCEEEEEEEEEETTTEEEEECCT------TSCCEEESSSSSSCH-HHHHHHSSSCTTCEEEEECSTTTTSSCCCTTT
T ss_pred CCCCCEEEEEEEEEECCCCEEEecCC------CCCEEEEECCCCcch-HHHHHHcCCCCCCEEEEEeCcHHhcCCCChhh
Confidence 568999877 43 357776543321 1233322 2222222 35667777778888998876643 1
Q ss_pred cceeeHHHHHHHhccCCccCcEEEEEeecCCCCCceeeeEEEeecc
Q 005368 274 QFIIGLNKYLEAVHHCFSVGMRFKMRFEGEDSPERRFTGTIVGVGD 319 (699)
Q Consensus 274 eFvV~~~~y~~A~~~~w~~GmRFkM~fE~eDs~~~~~~GTI~~v~~ 319 (699)
-+.|+++.|.. ...+.+||+|.+ ++++- .+.++|+.|.+
T Consensus 76 V~~vp~~~f~~--~~~~~~G~~~~~--~~~~G---~~~~~V~~v~~ 114 (196)
T 2kfw_A 76 VQRVPKDVFMG--VDELQVGMRFLA--ETDQG---PVPVEITAVED 114 (196)
T ss_dssp CEEECGGGCCC--SSCCCTTCEEEE--EETTE---EEEEEBCCCCS
T ss_pred EEEEEHHHCCC--ccCcccCCEEEE--ECCCC---cEEEEEEEEcC
Confidence 57788887742 247899999964 44552 57888888864
No 18
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=39.89 E-value=83 Score=30.03 Aligned_cols=100 Identities=20% Similarity=0.205 Sum_probs=62.9
Q ss_pred CCCCCEEEE-Ee--CCCCcEEEEEEeccccCCCCCCccc-ccCccccchHHHHHHHHhcCCcEEEEEecCCC--------
Q 005368 206 LVAGDAFVF-LR--GENGELRVGVRRLAHQQSSMPSSVI-SSQSMHLGVLATAAHAVKTSTLFIVYYKPRTS-------- 273 (699)
Q Consensus 206 L~aGD~VvF-~R--~~~G~l~vGiRRa~~~~~~~p~sv~-~~~sm~~gvla~A~~a~~tg~~F~V~Y~PR~s-------- 273 (699)
.+.||.|.+ |. ..+|+.+-.-+.. .|.... ....+-.| +.+|..-...|..++|..-|-..
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~------~P~~f~lG~g~vipG-~eeaL~Gm~~Ge~~~v~ippe~aYG~~~~~~ 75 (171)
T 2k8i_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVS------APLDYLHGHGSLISG-LETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (171)
T ss_dssp CCTTEEEEEEEEEEETTSCEEEECCSS------SCEEEETTSCSSCSH-HHHHHTTCCTTCEEEEEEETTTSSCCCCTTS
T ss_pred CCCCCEEEEEEEEEECCCCEEeeccCC------cCEEEEECCCCcchH-HHHHHcCCCCCCEEEEEECcHHhcCCCChhh
Confidence 568999877 44 3578766543210 232221 22222223 56677777889988888766431
Q ss_pred cceeeHHHHHHHhccCCccCcEEEEEeecCCCCCceeeeEEEeecc
Q 005368 274 QFIIGLNKYLEAVHHCFSVGMRFKMRFEGEDSPERRFTGTIVGVGD 319 (699)
Q Consensus 274 eFvV~~~~y~~A~~~~w~~GmRFkM~fE~eDs~~~~~~GTI~~v~~ 319 (699)
-+.|+++.+.. ...+.+||+|.+ ++++- + ..|+|+.|.+
T Consensus 76 v~~v~~~~f~~--~~~~~~G~~~~~--~~~~G--~-~~~~V~~v~~ 114 (171)
T 2k8i_A 76 VQRVPKDVFMG--VDELQVGMRFLA--ETDQG--P-VPVEITAVED 114 (171)
T ss_dssp EEEEEGGGGTT--SSCCCTTCEEEE--EETTE--E-EEEEEEEECS
T ss_pred EEEeeHHHCCc--ccCccCCcEEEE--ECCCC--c-EEEEEEEEcC
Confidence 56788888753 357999999985 44553 2 6899999975
No 19
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=39.36 E-value=91 Score=28.95 Aligned_cols=103 Identities=15% Similarity=0.104 Sum_probs=65.1
Q ss_pred ccCCCCCCEEEE-Ee--CC-CCcEEEEEEeccccCCCCCCccc-ccCccccchHHHHHHHHhcCCcEEEEEecCC-----
Q 005368 203 SKRLVAGDAFVF-LR--GE-NGELRVGVRRLAHQQSSMPSSVI-SSQSMHLGVLATAAHAVKTSTLFIVYYKPRT----- 272 (699)
Q Consensus 203 ~K~L~aGD~VvF-~R--~~-~G~l~vGiRRa~~~~~~~p~sv~-~~~sm~~gvla~A~~a~~tg~~F~V~Y~PR~----- 272 (699)
.+..+.||.|.+ |. .. +|+.+-.-+. ..|.... ....+-.| +.+|..-...|..++|.--|..
T Consensus 4 ~~~i~~gd~V~v~Y~g~~~~dG~~fdss~~------~~p~~f~~G~g~vipg-~e~aL~gm~~Ge~~~v~ipp~~aYG~~ 76 (151)
T 2kr7_A 4 HDLESIKQAALIEYEVREQGSSIVLDSNIS------KEPLEFIIGTNQIIAG-LEKAVLKAQIGEWEEVVIAPEEAYGVY 76 (151)
T ss_dssp CCCTTSCCEEEEEEEEEESSCSCEEEESTT------TCCEEEETTCCCSCHH-HHHHHTTCCBTCEEEEEECGGGTTCSS
T ss_pred ccCCCCCCEEEEEEEEEECCCCCEEEeCCC------CcCEEEEECCCCccHH-HHHHHcCCCCCCEEEEEEecHHHcCCC
Confidence 355778999977 43 24 7776644321 1232222 12222223 4667777788998988876643
Q ss_pred -C--cceeeHHHHHHHhccCCccCcEEEEEeecCCCCCceeeeEEEeecc
Q 005368 273 -S--QFIIGLNKYLEAVHHCFSVGMRFKMRFEGEDSPERRFTGTIVGVGD 319 (699)
Q Consensus 273 -s--eFvV~~~~y~~A~~~~w~~GmRFkM~fE~eDs~~~~~~GTI~~v~~ 319 (699)
. -+.|+++.+ . ...+.+||+|.+. +++- +.+.|+|+.|.+
T Consensus 77 ~~~~v~~v~~~~f-~--~~~~~~G~~~~~~--~~~G--~~~~~~V~~v~~ 119 (151)
T 2kr7_A 77 ESSYLQEVPRDQF-E--GIELEKGMSVFGQ--TEDN--QTIQAIIKDFSA 119 (151)
T ss_dssp CSCEEEEEEGGGG-T--TSCCCTTCEEEEE--ETTT--EEEEEEEEEECS
T ss_pred CcceEEEEcHHHc-C--CCCCccCCEEEEE--CCCC--CEEEEEEEEECC
Confidence 1 678889888 1 3579999999854 4443 467899999976
No 20
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=38.68 E-value=37 Score=29.62 Aligned_cols=55 Identities=9% Similarity=0.209 Sum_probs=40.4
Q ss_pred ccCCccCcEEEEEeecCCCCCceeeeEEEeeccCCCCCCCCCcceeeeeccCCCCCCCCCccccCcccccCC
Q 005368 287 HHCFSVGMRFKMRFEGEDSPERRFTGTIVGVGDFSEQWPGSKWRSLKIQWDEPATVQRPERVSPWEIEPFVA 358 (699)
Q Consensus 287 ~~~w~~GmRFkM~fE~eDs~~~~~~GTI~~v~~~dp~wp~S~WR~L~V~WDe~~~~~~~~RVSPWeIEp~~~ 358 (699)
...|.+|+++-.++ +|- ++|-++|++|... ..+.|++++.. .+.|.+=+|.|+..
T Consensus 19 ~~~f~vGd~VlArW-~D~---~yYPAkI~sV~~~---------~~YtV~F~DG~----~etvk~~~IKp~~~ 73 (85)
T 3qii_A 19 SSEFQINEQVLACW-SDC---RFYPAKVTAVNKD---------GTYTVKFYDGV----VQTVKHIHVKAFSK 73 (85)
T ss_dssp --CCCTTCEEEEEC-TTS---CEEEEEEEEECTT---------SEEEEEETTSC----EEEEEGGGEEECC-
T ss_pred CcccccCCEEEEEe-CCC---CEeeEEEEEECCC---------CeEEEEEeCCC----eEEecHHHcccCCh
Confidence 46899999999999 443 8999999999742 46999999933 45566666666543
No 21
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=35.50 E-value=10 Score=29.59 Aligned_cols=14 Identities=29% Similarity=0.349 Sum_probs=11.7
Q ss_pred ceeEeecCCCCeEE
Q 005368 631 WAVVFTDDEGDMML 644 (699)
Q Consensus 631 ~~v~Y~D~eGD~ml 644 (699)
-.|+|+|.+|+|=.
T Consensus 19 c~V~YtD~dG~WGV 32 (46)
T 1e8p_A 19 TKVEYTDASGQWGV 32 (46)
T ss_dssp SCEEEEETTEEEEE
T ss_pred ceEEEEcCCCcccc
Confidence 36999999999954
No 22
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=33.29 E-value=39 Score=26.62 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=24.2
Q ss_pred cCCccCcEEEEEeecCCCCCceeeeEEEeecc
Q 005368 288 HCFSVGMRFKMRFEGEDSPERRFTGTIVGVGD 319 (699)
Q Consensus 288 ~~w~~GmRFkM~fE~eDs~~~~~~GTI~~v~~ 319 (699)
..|.+|+.+..+|..|. .||-++|.++..
T Consensus 2 ~~~~~G~~c~A~~s~Dg---~wYrA~I~~i~~ 30 (59)
T 1mhn_A 2 QQWKVGDKCSAIWSEDG---CIYPATIASIDF 30 (59)
T ss_dssp CCCCTTCEEEEECTTTS---CEEEEEEEEEET
T ss_pred CcCCcCCEEEEEECCCC---CEEEEEEEEEcC
Confidence 47999999999995443 899999999963
No 23
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=32.37 E-value=30 Score=29.02 Aligned_cols=35 Identities=11% Similarity=0.339 Sum_probs=30.3
Q ss_pred cccccccCCCCCCEEEEEeC-CCCcEEEEEEecccc
Q 005368 198 STFVTSKRLVAGDAFVFLRG-ENGELRVGVRRLAHQ 232 (699)
Q Consensus 198 s~FV~~K~L~aGD~VvF~R~-~~G~l~vGiRRa~~~ 232 (699)
.+++++-+|+.||.+...-+ .+|++.++.+|.++.
T Consensus 31 aeI~kaLgIk~gD~fel~ve~kdgeIvLcykRVKk~ 66 (68)
T 3o27_A 31 KDIAEALDIKPDDTFILNMEQKDGDIVLSYKRVKEL 66 (68)
T ss_dssp HHHHHHTTCCTTCCEEEEEEEETTEEEEEEEECGGG
T ss_pred HHHHHHhCCCCCCEEEEEEecCCCeEEEEehhhhhc
Confidence 48899999999999999775 589999999997654
No 24
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=30.53 E-value=43 Score=25.78 Aligned_cols=28 Identities=4% Similarity=0.125 Sum_probs=22.6
Q ss_pred CCccCcEEEEEeecCCCCCceeeeEEEeecc
Q 005368 289 CFSVGMRFKMRFEGEDSPERRFTGTIVGVGD 319 (699)
Q Consensus 289 ~w~~GmRFkM~fE~eDs~~~~~~GTI~~v~~ 319 (699)
.|.+|+..-..|..|. .||-++|.++..
T Consensus 1 ~wk~G~~c~A~~s~Dg---~wYrA~I~~i~~ 28 (54)
T 3s6w_A 1 MWKPGDECFALYWEDN---KFYRAEVEALHS 28 (54)
T ss_dssp CCCTTCEEEEEETTTT---EEEEEEEEEC--
T ss_pred CCCCCCEEEEEECCCC---CEEEEEEEEEeC
Confidence 4999999999995444 899999999953
No 25
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=30.00 E-value=47 Score=26.67 Aligned_cols=43 Identities=12% Similarity=0.248 Sum_probs=31.9
Q ss_pred ccCCccCcEEEEEeecCCCCCceeeeEEEeeccCCCCCCCCCcceeeeeccCCC
Q 005368 287 HHCFSVGMRFKMRFEGEDSPERRFTGTIVGVGDFSEQWPGSKWRSLKIQWDEPA 340 (699)
Q Consensus 287 ~~~w~~GmRFkM~fE~eDs~~~~~~GTI~~v~~~dp~wp~S~WR~L~V~WDe~~ 340 (699)
...|.+|+.+.-+|..|. .||.++|.++...+ ....|...+-.
T Consensus 6 ~~~~~vGd~c~A~~s~Dg---~wYrA~I~~v~~~~--------~~~~V~fvdYG 48 (64)
T 4a4f_A 6 THSWKVGDKCMAVWSEDG---QCYEAEIEEIDEEN--------GTAAITFAGYG 48 (64)
T ss_dssp SSCCCTTCEEEEECTTTS---SEEEEEEEEEETTT--------TEEEEEETTTT
T ss_pred CCCCCCCCEEEEEECCCC---CEEEEEEEEEcCCC--------CEEEEEEEecC
Confidence 468999999999995443 89999999997411 24567776643
No 26
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.93 E-value=35 Score=32.84 Aligned_cols=51 Identities=29% Similarity=0.433 Sum_probs=32.6
Q ss_pred eeCCCCeEEEEE--EecCCCceeeecccccccc-cccCCCCCCEEEEEeCCCCcEEEEEE
Q 005368 171 KDLHGYEWRFKH--IFRGQPRRHLLTTGWSTFV-TSKRLVAGDAFVFLRGENGELRVGVR 227 (699)
Q Consensus 171 ~D~~G~~W~Fr~--~yr~~~rr~lLTtGWs~FV-~~K~L~aGD~VvF~R~~~G~l~vGiR 227 (699)
.|+.+..|-|.- +..+ .+ .+... |- .-..|.+||.|-|++..+|+|++.|-
T Consensus 86 ~~L~~~~Wv~~~~~v~~n-g~-~~~e~----~~~~l~~l~~Gd~ig~~~~~~G~l~~~iN 139 (170)
T 2e63_A 86 TGLKGGSWVVSGCSVLRD-GR-SVLEE----YGQDLDQLGEGDRVGVERTVAGELRLWVN 139 (170)
T ss_dssp GGCCSSEEEESSSEEEES-SC-EEEES----CSSCGGGCCSSCCEEEEECTTSCEEEEES
T ss_pred hhCCCCeEEEeccccccC-Cc-ccchh----ccccccccCCCCEEEEEEcCCcEEEEEEC
Confidence 466778898742 2221 11 12211 11 23467899999999999999999875
No 27
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.62 E-value=52 Score=27.65 Aligned_cols=40 Identities=15% Similarity=0.312 Sum_probs=32.1
Q ss_pred ccCCccCcEEEEEeecCCCCCceeeeEEEeeccCCCCCCCCCcceeeeeccCC
Q 005368 287 HHCFSVGMRFKMRFEGEDSPERRFTGTIVGVGDFSEQWPGSKWRSLKIQWDEP 339 (699)
Q Consensus 287 ~~~w~~GmRFkM~fE~eDs~~~~~~GTI~~v~~~dp~wp~S~WR~L~V~WDe~ 339 (699)
...|.+|+++.-+|. |. .||-++|.+|.. + ....|..++-
T Consensus 7 ~~~~kvGd~clA~ws-Dg---~~Y~A~I~~v~~------~---~~~~V~f~Dy 46 (74)
T 2equ_A 7 GFDFKAGEEVLARWT-DC---RYYPAKIEAINK------E---GTFTVQFYDG 46 (74)
T ss_dssp CCCCCTTCEEEEECS-SS---SEEEEEEEEEST------T---SSEEEEETTS
T ss_pred CCCCCCCCEEEEECC-CC---CEEEEEEEEECC------C---CEEEEEEecC
Confidence 468999999999996 43 899999999963 1 3578888865
No 28
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=26.09 E-value=66 Score=29.07 Aligned_cols=69 Identities=19% Similarity=0.216 Sum_probs=44.4
Q ss_pred eHHHHHHHhccCCccCcEEEEEeecCCCCCceeeeEEEeeccCCCCCCCCCcceeeeeccCCCCCCCCCccccCcccccC
Q 005368 278 GLNKYLEAVHHCFSVGMRFKMRFEGEDSPERRFTGTIVGVGDFSEQWPGSKWRSLKIQWDEPATVQRPERVSPWEIEPFV 357 (699)
Q Consensus 278 ~~~~y~~A~~~~w~~GmRFkM~fE~eDs~~~~~~GTI~~v~~~dp~wp~S~WR~L~V~WDe~~~~~~~~RVSPWeIEp~~ 357 (699)
+++.|-.-+..+..+|||+||.=.-|+-+. -=.|++. ++. + .-| ..||.|..... +-.|.-=.||.+.
T Consensus 10 s~~~Ya~YVr~~l~pGM~VR~~~dyeev~~-GD~G~vl-~s~-~-Gl~-----~vQv~W~~~G~---TyWV~~~~~Ellg 77 (105)
T 2jng_A 10 SGNTYALYVRDTLQPGMRVRMLDDYEEISA-GDEGEFR-QSN-N-GVP-----PVQVFWESTGR---TYWVHWHMLEILG 77 (105)
T ss_dssp SSHHHHHHHHHHCCTTCEEEECSCBTTBCT-TCEEEEE-EEC-T-TSS-----EEEEEETTTTE---EEEEEGGGEEECC
T ss_pred cchhHHHHHHhcCCCccEEeeehhhhhhcc-CCceeEE-ecC-C-CCc-----cceeeehhcCc---eEEEEeehhhhcC
Confidence 456788888889999999999744343322 2367777 431 2 122 89999987663 3445555667654
Q ss_pred C
Q 005368 358 A 358 (699)
Q Consensus 358 ~ 358 (699)
.
T Consensus 78 ~ 78 (105)
T 2jng_A 78 F 78 (105)
T ss_dssp C
T ss_pred C
Confidence 4
No 29
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=24.07 E-value=1.7e+02 Score=28.04 Aligned_cols=103 Identities=12% Similarity=0.161 Sum_probs=65.1
Q ss_pred CCCCCCEEEE-Ee--CCCCcEEEEEEeccccCCCCCCccc-ccCccccchHHHHHHHHhcCCcEEEEEecCC------C-
Q 005368 205 RLVAGDAFVF-LR--GENGELRVGVRRLAHQQSSMPSSVI-SSQSMHLGVLATAAHAVKTSTLFIVYYKPRT------S- 273 (699)
Q Consensus 205 ~L~aGD~VvF-~R--~~~G~l~vGiRRa~~~~~~~p~sv~-~~~sm~~gvla~A~~a~~tg~~F~V~Y~PR~------s- 273 (699)
..+.||.|.+ |+ ..+|+.+-.-+.. +.|.... ....+- --+.+|..-...|..++|..-|.. .
T Consensus 24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~-----~~P~~f~lG~g~vi-pG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~~~ 97 (169)
T 4dt4_A 24 SVQSNSAVLVHFTLKLDDGTTAESTRNN-----GKPALFRLGDASLS-EGLEQHLLGLKVGDKTTFSLEPDAAFGVPSPD 97 (169)
T ss_dssp SCCTTCEEEEEEEEEETTSCEEEEHHHH-----TSCEEEETTSSSSC-HHHHHHHTTCCTTCEEEEEECGGGTTCCCCGG
T ss_pred cCCCCCEEEEEEEEEECCCCEEEecCCC-----CCCEEEEECCCCcc-HHHHHHHcCCCCCCEEEEEEChHHhcCCCChH
Confidence 5779999987 44 3578866442211 1232222 112222 235678888888999999877643 1
Q ss_pred -cceeeHHHHHHHhccCCccCcEEEEEeecCCCCCceeeeEEEeecc
Q 005368 274 -QFIIGLNKYLEAVHHCFSVGMRFKMRFEGEDSPERRFTGTIVGVGD 319 (699)
Q Consensus 274 -eFvV~~~~y~~A~~~~w~~GmRFkM~fE~eDs~~~~~~GTI~~v~~ 319 (699)
=+.|+++.+.. ...+.+||+|.+ ++++- ..+.|+|+.|.+
T Consensus 98 lv~~vp~~~f~~--~~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 138 (169)
T 4dt4_A 98 LIQYFSRREFMD--AGEPEIGAIMLF--TAMDG--SEMPGVIREING 138 (169)
T ss_dssp GEEEEEGGGGTT--TCCCCTTCEEEE--ECTTS--CEEEEEEEEEET
T ss_pred HEEEeCHHHCCC--cCCCCCCcEEEE--ECCCC--CEEEEEEEEEcC
Confidence 46788887753 346889999875 44442 467899999976
No 30
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=23.40 E-value=64 Score=30.92 Aligned_cols=21 Identities=10% Similarity=0.320 Sum_probs=19.3
Q ss_pred CCCCEEEEEeCCCCcEEEEEE
Q 005368 207 VAGDAFVFLRGENGELRVGVR 227 (699)
Q Consensus 207 ~aGD~VvF~R~~~G~l~vGiR 227 (699)
..||.+.|+++.+|+|++.|-
T Consensus 107 ~~g~~l~f~v~~~G~l~~~iN 127 (168)
T 2yue_A 107 EKDNILYYYVNGAGDVIYGIN 127 (168)
T ss_dssp CSSCEEEEEECTTSEEEEEES
T ss_pred cCCCEEEEEEcCCCEEEEEEC
Confidence 679999999999999999985
No 31
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=23.22 E-value=68 Score=27.76 Aligned_cols=43 Identities=9% Similarity=0.131 Sum_probs=30.8
Q ss_pred ccCCccCcEEEEEeecCCCCCceeeeEEEeeccCCCCCCCCCcceeeeeccCCC
Q 005368 287 HHCFSVGMRFKMRFEGEDSPERRFTGTIVGVGDFSEQWPGSKWRSLKIQWDEPA 340 (699)
Q Consensus 287 ~~~w~~GmRFkM~fE~eDs~~~~~~GTI~~v~~~dp~wp~S~WR~L~V~WDe~~ 340 (699)
...|.+|+.+.-.|..|. .||-++|.+|.... ....|.-.+=.
T Consensus 8 ~~~~kvGd~C~A~ys~Dg---~wYrA~I~~i~~~~--------~~~~V~fiDYG 50 (88)
T 1g5v_A 8 LQQWKVGDKCSAIWSEDG---CIYPATIASIDFKR--------ETCVVVYTGYG 50 (88)
T ss_dssp -CCCCSSCEEEEECTTTC---CEEEEEEEEEETTT--------TEEEEEETTTC
T ss_pred cCCCCCCCEEEEEECCCC---CEEEEEEEEecCCC--------CEEEEEEecCC
Confidence 468999999999995444 89999999996311 24567665443
Done!