Query 005370
Match_columns 699
No_of_seqs 251 out of 1683
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 22:23:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005370.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005370hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00272 heat shock protein 83 100.0 2E-167 5E-172 1431.4 68.1 672 1-676 1-676 (701)
2 PTZ00130 heat shock protein 90 100.0 3E-166 7E-171 1419.9 66.3 668 4-678 65-766 (814)
3 KOG0020 Endoplasmic reticulum 100.0 2E-168 4E-173 1326.0 41.8 674 3-681 71-757 (785)
4 COG0326 HtpG Molecular chapero 100.0 3E-161 8E-166 1336.5 59.5 617 1-668 1-622 (623)
5 KOG0019 Molecular chaperone (H 100.0 1E-159 3E-164 1296.3 51.1 617 3-674 33-651 (656)
6 PRK05218 heat shock protein 90 100.0 5E-141 1E-145 1214.1 63.6 606 4-669 3-613 (613)
7 PRK14083 HSP90 family protein; 100.0 1E-131 2E-136 1126.9 58.6 573 6-671 2-596 (601)
8 PF00183 HSP90: Hsp90 protein; 100.0 1E-129 2E-134 1099.7 44.2 494 184-678 1-505 (531)
9 PF13589 HATPase_c_3: Histidin 99.7 1.2E-16 2.7E-21 151.4 8.5 102 25-151 1-105 (137)
10 TIGR00585 mutl DNA mismatch re 99.4 7.4E-13 1.6E-17 142.4 14.2 168 16-210 10-193 (312)
11 PRK00095 mutL DNA mismatch rep 99.3 5.6E-11 1.2E-15 138.7 21.4 161 16-203 10-182 (617)
12 COG1389 DNA topoisomerase VI, 99.3 9.1E-12 2E-16 134.7 11.4 139 25-182 30-184 (538)
13 COG0323 MutL DNA mismatch repa 99.2 4.6E-11 1E-15 139.2 11.7 160 16-202 11-183 (638)
14 PRK04184 DNA topoisomerase VI 99.1 3.4E-10 7.3E-15 128.4 13.9 157 25-203 30-204 (535)
15 TIGR01052 top6b DNA topoisomer 99.0 3.1E-09 6.7E-14 119.4 13.4 153 30-203 31-195 (488)
16 PRK14868 DNA topoisomerase VI 99.0 2.7E-09 5.9E-14 123.5 12.0 151 30-203 49-210 (795)
17 PRK14867 DNA topoisomerase VI 98.5 4E-07 8.6E-12 105.6 11.8 152 30-203 39-201 (659)
18 TIGR01055 parE_Gneg DNA topois 98.5 2.1E-07 4.6E-12 108.6 9.4 158 28-210 31-203 (625)
19 PRK05559 DNA topoisomerase IV 98.5 4.1E-07 8.8E-12 106.5 9.6 160 28-209 38-209 (631)
20 PF02518 HATPase_c: Histidine 98.5 4.3E-07 9.3E-12 82.0 7.6 81 29-134 7-87 (111)
21 smart00433 TOP2c Topoisomerase 98.4 5.2E-07 1.1E-11 105.1 8.7 155 31-209 5-173 (594)
22 PRK05644 gyrB DNA gyrase subun 98.3 1.3E-06 2.9E-11 102.3 9.5 156 29-209 39-207 (638)
23 TIGR01059 gyrB DNA gyrase, B s 98.3 2E-06 4.4E-11 101.3 9.4 157 29-209 32-200 (654)
24 KOG1979 DNA mismatch repair pr 98.3 4.7E-06 1E-10 93.1 10.9 151 22-203 22-188 (694)
25 PRK14939 gyrB DNA gyrase subun 98.2 2.5E-06 5.5E-11 100.9 8.7 153 29-210 39-208 (756)
26 KOG1978 DNA mismatch repair pr 98.2 3.2E-06 7E-11 96.5 7.9 160 17-202 10-181 (672)
27 KOG1977 DNA mismatch repair pr 97.7 1.9E-05 4.2E-10 89.6 2.9 126 27-177 21-149 (1142)
28 TIGR01058 parE_Gpos DNA topois 97.3 0.00077 1.7E-08 79.2 9.8 158 29-210 36-206 (637)
29 PRK10755 sensor protein BasS/P 97.3 0.00045 9.7E-09 75.0 7.2 101 30-180 250-350 (356)
30 cd00075 HATPase_c Histidine ki 97.3 0.001 2.2E-08 56.9 7.9 86 30-140 3-92 (103)
31 TIGR02916 PEP_his_kin putative 97.2 0.0007 1.5E-08 80.6 7.3 74 31-133 583-656 (679)
32 PRK10604 sensor protein RstB; 97.1 0.001 2.2E-08 74.8 7.1 77 31-133 323-399 (433)
33 PRK10549 signal transduction h 96.9 0.0018 4E-08 72.6 7.7 79 31-133 356-434 (466)
34 PRK11100 sensory histidine kin 96.9 0.0029 6.2E-08 70.8 8.7 102 30-179 371-472 (475)
35 smart00387 HATPase_c Histidine 96.9 0.0027 5.9E-08 55.1 6.7 81 30-135 8-88 (111)
36 TIGR02938 nifL_nitrog nitrogen 96.8 0.0031 6.7E-08 70.5 8.5 78 30-132 390-469 (494)
37 PRK11086 sensory histidine kin 96.8 0.0032 6.9E-08 72.0 8.6 75 30-132 436-510 (542)
38 TIGR01386 cztS_silS_copS heavy 96.8 0.0025 5.5E-08 70.9 7.5 100 31-178 357-456 (457)
39 PRK10364 sensor protein ZraS; 96.8 0.0029 6.3E-08 71.3 7.8 73 31-133 352-424 (457)
40 COG0187 GyrB Type IIA topoisom 96.8 0.0034 7.3E-08 72.1 8.1 162 28-212 37-211 (635)
41 PLN03237 DNA topoisomerase 2; 96.7 0.0072 1.6E-07 75.8 11.1 161 30-212 80-260 (1465)
42 PRK10815 sensor protein PhoQ; 96.7 0.0034 7.3E-08 71.9 7.5 97 31-180 382-478 (485)
43 PRK15053 dpiB sensor histidine 96.6 0.0058 1.3E-07 70.4 8.8 103 31-179 436-538 (545)
44 PRK15347 two component system 96.6 0.0037 8E-08 76.6 7.4 97 31-179 517-613 (921)
45 PRK11006 phoR phosphate regulo 96.6 0.0061 1.3E-07 68.2 8.3 79 30-132 320-398 (430)
46 PRK11466 hybrid sensory histid 96.5 0.0045 9.8E-08 75.9 7.6 81 31-140 565-649 (914)
47 PTZ00108 DNA topoisomerase 2-l 96.5 0.011 2.4E-07 74.4 10.7 164 29-211 59-241 (1388)
48 PLN03128 DNA topoisomerase 2; 96.5 0.012 2.5E-07 73.2 10.4 160 30-211 55-234 (1135)
49 PRK09470 cpxA two-component se 96.5 0.0084 1.8E-07 67.0 8.5 75 31-131 357-431 (461)
50 TIGR02956 TMAO_torS TMAO reduc 96.4 0.0088 1.9E-07 73.8 8.9 74 31-131 583-657 (968)
51 PRK11360 sensory histidine kin 96.4 0.0079 1.7E-07 68.9 7.9 49 31-93 504-553 (607)
52 PRK09467 envZ osmolarity senso 96.3 0.0092 2E-07 66.4 7.5 60 62-133 350-409 (435)
53 PHA02569 39 DNA topoisomerase 96.3 0.017 3.6E-07 67.8 9.7 159 30-211 48-223 (602)
54 TIGR03785 marine_sort_HK prote 96.2 0.011 2.4E-07 70.9 8.2 80 30-133 600-679 (703)
55 PRK09303 adaptive-response sen 96.2 0.013 2.8E-07 64.8 8.3 84 24-133 266-353 (380)
56 COG3290 CitA Signal transducti 96.2 0.013 2.8E-07 66.6 7.8 74 30-131 430-505 (537)
57 TIGR02966 phoR_proteo phosphat 96.1 0.016 3.6E-07 61.0 7.7 78 31-132 233-310 (333)
58 PTZ00109 DNA gyrase subunit b; 96.0 0.011 2.3E-07 71.1 6.2 162 30-210 132-356 (903)
59 TIGR01925 spIIAB anti-sigma F 95.9 0.026 5.6E-07 52.9 7.5 46 30-86 42-87 (137)
60 PRK10337 sensor protein QseC; 95.9 0.019 4.2E-07 64.2 7.6 72 31-133 356-427 (449)
61 PRK09835 sensor kinase CusS; P 95.8 0.023 4.9E-07 64.1 7.7 51 30-94 378-428 (482)
62 PRK10618 phosphotransfer inter 95.7 0.027 5.8E-07 69.3 8.6 85 31-141 569-660 (894)
63 PRK03660 anti-sigma F factor; 95.7 0.043 9.4E-07 51.9 8.2 48 29-87 41-88 (146)
64 PRK11091 aerobic respiration c 95.7 0.032 7E-07 67.4 9.1 89 30-142 401-494 (779)
65 PRK04069 serine-protein kinase 95.6 0.015 3.4E-07 56.6 4.7 88 29-139 44-131 (161)
66 PRK13837 two-component VirA-li 95.2 0.05 1.1E-06 66.5 8.3 81 31-141 564-663 (828)
67 PRK10490 sensor protein KdpD; 95.0 0.056 1.2E-06 66.6 8.2 77 30-132 781-857 (895)
68 COG4191 Signal transduction hi 95.0 0.035 7.5E-07 63.6 5.6 52 31-94 501-552 (603)
69 PRK11107 hybrid sensory histid 95.0 0.065 1.4E-06 65.7 8.5 87 31-142 412-507 (919)
70 PF13581 HATPase_c_2: Histidin 94.9 0.07 1.5E-06 49.0 6.7 81 29-137 33-113 (125)
71 PRK10547 chemotaxis protein Ch 94.9 0.091 2E-06 62.4 9.1 53 32-92 390-448 (670)
72 PRK10600 nitrate/nitrite senso 94.9 0.038 8.2E-07 64.4 5.9 43 31-88 473-515 (569)
73 PRK10841 hybrid sensory kinase 94.8 0.076 1.6E-06 65.7 8.5 78 30-132 565-642 (924)
74 TIGR01924 rsbW_low_gc serine-p 94.8 0.059 1.3E-06 52.5 6.0 88 29-139 44-131 (159)
75 PRK09959 hybrid sensory histid 94.6 0.074 1.6E-06 67.5 7.9 76 30-132 831-911 (1197)
76 COG0642 BaeS Signal transducti 94.5 0.043 9.4E-07 56.9 4.7 48 30-92 231-278 (336)
77 PRK11073 glnL nitrogen regulat 94.1 0.15 3.2E-06 55.0 7.9 49 30-93 240-300 (348)
78 PRK13557 histidine kinase; Pro 92.6 0.3 6.4E-06 55.6 7.6 53 75-141 326-382 (540)
79 KOG0787 Dehydrogenase kinase [ 91.3 0.66 1.4E-05 50.7 7.9 123 29-184 262-384 (414)
80 COG3920 Signal transduction hi 91.1 0.3 6.6E-06 50.3 4.9 46 31-87 126-173 (221)
81 COG2172 RsbW Anti-sigma regula 91.0 0.96 2.1E-05 43.6 8.0 87 29-141 42-128 (146)
82 COG3850 NarQ Signal transducti 90.9 0.68 1.5E-05 52.8 7.8 43 31-88 485-527 (574)
83 COG0643 CheA Chemotaxis protei 90.8 0.92 2E-05 54.5 9.2 129 31-179 436-572 (716)
84 COG4251 Bacteriophytochrome (l 90.2 0.65 1.4E-05 53.9 6.9 73 63-147 657-735 (750)
85 PRK13560 hypothetical protein; 89.3 0.39 8.5E-06 57.6 4.6 45 31-88 715-762 (807)
86 PRK11644 sensory histidine kin 89.2 0.3 6.6E-06 56.2 3.5 43 31-88 414-456 (495)
87 COG5000 NtrY Signal transducti 88.7 0.81 1.7E-05 53.0 6.2 55 31-94 604-660 (712)
88 COG4585 Signal transduction hi 87.0 0.55 1.2E-05 51.6 3.7 44 30-88 282-325 (365)
89 COG2205 KdpD Osmosensitive K+ 86.3 2.7 5.8E-05 50.5 8.8 55 31-99 779-833 (890)
90 COG4192 Signal transduction hi 85.5 1.4 3.1E-05 49.3 5.7 55 31-101 568-625 (673)
91 KOG0019 Molecular chaperone (H 83.2 0.043 9.4E-07 62.7 -7.3 239 387-639 357-601 (656)
92 KOG1845 MORC family ATPases [C 78.3 1.9 4.1E-05 51.7 3.6 96 31-141 150-246 (775)
93 PRK13559 hypothetical protein; 76.9 2.2 4.7E-05 46.3 3.4 44 31-87 271-318 (361)
94 PRK10935 nitrate/nitrite senso 75.6 2.7 5.8E-05 48.5 3.9 42 31-87 475-517 (565)
95 KOG0355 DNA topoisomerase type 74.5 4.5 9.8E-05 48.5 5.3 125 30-178 56-193 (842)
96 COG2972 Predicted signal trans 73.6 10 0.00022 43.3 7.9 55 25-91 348-404 (456)
97 COG5002 VicK Signal transducti 72.3 6 0.00013 43.3 5.2 56 63-128 362-419 (459)
98 COG4564 Signal transduction hi 54.0 16 0.00035 39.8 4.2 57 24-91 352-408 (459)
99 KOG1845 MORC family ATPases [C 53.4 11 0.00024 45.4 3.2 53 76-143 2-55 (775)
100 PF12588 PSDC: Phophatidylseri 48.8 33 0.00072 32.9 5.1 56 612-670 2-62 (141)
101 PF14501 HATPase_c_5: GHKL dom 45.5 34 0.00073 30.1 4.4 71 31-134 9-79 (100)
102 COG2865 Predicted transcriptio 45.1 21 0.00046 40.8 3.7 86 24-131 267-356 (467)
103 COG3851 UhpB Signal transducti 43.6 25 0.00054 38.8 3.8 26 61-86 429-454 (497)
104 PF06112 Herpes_capsid: Gammah 35.6 41 0.00088 32.4 3.4 19 607-625 17-35 (147)
105 PRK14723 flhF flagellar biosyn 28.5 4.6E+02 0.0099 32.3 11.5 87 433-521 187-275 (767)
106 PF04122 CW_binding_2: Putativ 25.2 2.1E+02 0.0047 24.6 6.1 56 458-516 24-80 (92)
107 PTZ00069 60S ribosomal protein 24.1 1.1E+02 0.0024 32.8 4.7 66 355-423 163-235 (300)
108 cd03567 VHS_GGA VHS domain fam 22.5 1.1E+02 0.0023 29.3 3.9 39 385-423 101-139 (139)
109 COG5381 Uncharacterized protei 21.6 3.2E+02 0.0069 26.6 6.7 81 31-126 67-148 (184)
110 TIGR00032 argG argininosuccina 21.5 1.3E+02 0.0028 33.9 4.9 43 61-126 211-253 (394)
111 PF04025 DUF370: Domain of unk 20.8 1.1E+02 0.0025 26.0 3.2 36 29-83 23-58 (73)
112 COG3852 NtrB Signal transducti 20.7 1.7E+02 0.0036 32.0 5.2 64 24-91 235-305 (363)
No 1
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=100.00 E-value=2.5e-167 Score=1431.42 Aligned_cols=672 Identities=67% Similarity=1.090 Sum_probs=594.5
Q ss_pred CCcccccchhhcHHHHHHHHHhcCCCCchHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEe
Q 005370 1 MADTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVD 80 (699)
Q Consensus 1 m~~~e~~~F~~d~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~D 80 (699)
|+ |+|+||+|+++||+||+++||||+++|||||||||+|||+++|+++++++.+.....++.|+|..|.++.+|+|+|
T Consensus 1 ~~--e~~~Fqae~~~Ll~lli~slYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~L~I~D 78 (701)
T PTZ00272 1 MT--ETFAFQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVED 78 (701)
T ss_pred CC--ceEecHHHHHHHHHHHHhcccCCccHhHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcCCCCEEEEEE
Confidence 55 7899999999999999999999999999999999999999999999999887766677899999998889999999
Q ss_pred CCCCCCHHHHHHHHhhhhccCchhHHHHHhcCCCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccCceEEEE
Q 005370 81 SGIGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVT 160 (699)
Q Consensus 81 nGiGMt~~el~~~l~~Ia~S~~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~~~~~i~ 160 (699)
||+|||++||.++||+||+||++.|+++++.+.+..+|||||||||||||||++|+|+||+.++.++.|+|+|+|.|+|.
T Consensus 79 nGiGMt~edl~~~LgtIa~SGt~~f~~~~~~~~~~~~iGqFGvGfyS~Fmvad~V~V~Srs~~~~~~~W~s~~~g~y~i~ 158 (701)
T PTZ00272 79 NGIGMTKADLVNNLGTIARSGTKAFMEALEAGGDMSMIGQFGVGFYSAYLVADRVTVTSKNNSDESYVWESSAGGTFTIT 158 (701)
T ss_pred CCCCCCHHHHHHHhhhhhhcchHHHHHHhhccCCccccCCCCcceEEEEEeccEEEEEEecCCCceEEEEECCCCcEEEE
Confidence 99999999999999999999999999888655567899999999999999999999999987678999999999999998
Q ss_pred eCCCCCCCCCceEEEEEeccchhhcccHHHHHHHHHHhcCCCccceEeecccccccccCCCCCCCc----cccccCCccc
Q 005370 161 RDVSGEPLGRGTKMTLYLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEISDDEDDEP----KKEEEGDVED 236 (699)
Q Consensus 161 ~~~~~~~~~~GT~I~L~lk~~~~~~~~~~~l~~ii~~ys~fl~~pI~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 236 (699)
+.+. ...++||+|+|||+++..+|++.++|+++|++||.|++|||+++..+....+++++++..+ ++.+.+.+++
T Consensus 159 ~~~~-~~~~~GT~I~L~Lk~d~~ef~~~~~i~~li~kYs~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (701)
T PTZ00272 159 STPE-SDMKRGTRITLHLKEDQMEYLEPRRLKELIKKHSEFIGYDIELMVEKTTEKEVTDEDEEDTKKADEDGEEPKVEE 237 (701)
T ss_pred eCCC-CCCCCCCEEEEEECCchHHhccHHHHHHHHHHhccccCcceEEeeccccccccCcchhhhccccccccccccccc
Confidence 8542 3458999999999999999999999999999999999999999864433322222211000 0111111222
Q ss_pred cchHHHhhhcccccccccccceeeeccCCCCccCCCCCCCHHHHHHHHHHhhcCccCCceeeeeecccceeeEEEEEecC
Q 005370 237 VDEEKEKEGKKKKKIKEVSHEWQLINKQKPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAVLFVPK 316 (699)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~iN~~~piW~~~~~~v~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~ 316 (699)
.+++.+.+.+++++++++.++|++||+++|||+|+|++||+++|++|||+++++|++||+|+||++||+++|+||||||+
T Consensus 238 ~~~~~~~~~~k~~~~~~~~~~~e~iN~~~~lW~r~~~~i~~eey~~Fyk~~~~~~~~Pl~~ih~~~eg~~~~~~llyiP~ 317 (701)
T PTZ00272 238 VKEGDEGKKKKTKKVKEVTKEYEVQNKHKPLWTRDPKDVTKEEYAAFYKAISNDWEDPAATKHFSVEGQLEFRSIMFVPK 317 (701)
T ss_pred ccccccccccccccccccccchhhcccCcCCeecCcccCCHHHHHHHHHHhcCCcCCCceeeeeccCCceeeEEEEEeCC
Confidence 21111122234456666778899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchhhhcccceEEEeeceeccccccccccccccceeeeecCCCCCCccchhhhcccHHHHHHHHHHHHHHHHHHH
Q 005370 317 RAPFDLFDTRKKMNNIKLYVRRVFIMDNCEELIPEYLGFIKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFN 396 (699)
Q Consensus 317 ~~p~~~~~~~~~~~~i~LY~~rv~I~d~~~~llP~~l~Fv~GvVDS~dLplnvSRE~lq~~~~l~~i~~~l~~k~~~~L~ 396 (699)
.+|+++|+.+..+++|+||||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|.
T Consensus 318 ~~~~~~~~~~~~~~~i~LY~~rVfI~d~~~~llP~~l~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~i~~~i~~ki~~~l~ 397 (701)
T PTZ00272 318 RAPFDMFEPNKKRNNIKLYVRRVFIMDNCEDLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIVKKCLEMFD 397 (701)
T ss_pred CCccchhhhhhccCceEEEEeeEEEecchhhhhHHHHhheeEEeecCCCCCccCHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence 99999987544578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCHHHHHHHHHHHhHHhhccccCChhhHHHHhchhcccccCCCCceecHHHHHHhhcCCCceEEEEeCCCHHHHhcC
Q 005370 397 EIAENKEDYNKFYDAFSKNLKLGIHEDSQNRAKLADLLRYHSTKSSEEFTSLKDYVTRMKEGQKDIYYITGESKKAVENS 476 (699)
Q Consensus 397 ~la~d~e~y~~f~~~~~~~lK~G~~eD~~~~e~l~~lLrf~ss~~~~~~~sL~eY~~rm~~~Q~~IyY~~~~~~~~~~~s 476 (699)
++|+++++|++||++||.+||+|+++|+.|+++|++||||+||.++++++||+||++||+++|+.|||++|++++++++|
T Consensus 398 ~la~~~~~y~~f~~~~g~~lK~G~~~D~~~~~~l~~Llrf~ss~~~~~~~sL~eYv~rmk~~Q~~IYY~~~~s~~~~~~s 477 (701)
T PTZ00272 398 EVAENKEDYKQFYEQFGKNIKLGIHEDTANRKKLMELLRFYSTESGEEMTTLKDYVTRMKAGQKSIYYITGDSKKKLETS 477 (701)
T ss_pred HHhhCHHHHHHHHHHHhhhhheeeccCHhHHHHHHHhhceeecCCCCceeeHHHHHHhhccCCceEEEEeCCCHHHHHhC
Confidence 99999999999999999999999999999999999999999998667899999999999999999999999999999999
Q ss_pred hhhHHHHHcCCEEEEecCCchHHHHHHHhhccCceeEeccccCCCCCcchHHHHhhHHHhHHhHHHHHHHHHHHhCCccc
Q 005370 477 PFLERLKKKGYEVLYMVDAIDEYAVGQLKEYEGKKLVSATKEGLKLDDETEEEKKKKEEKKKSFENLCKTMKDILGDRVE 556 (699)
Q Consensus 477 p~lE~~~~kG~eVL~l~dpiDE~~l~~L~~~~~~~f~~V~~~~~~l~~~~~~~~~~~~~~~~e~~~L~~~~k~~L~~~V~ 556 (699)
||+|+|+++|||||||+||||||||++|++|+|++|++|++++++++. .++++...+..++++++|++|+|++|+++|.
T Consensus 478 P~lE~~~~kg~EVL~l~dpiDe~~i~~l~ey~~k~f~sV~~~~~~l~~-~~~e~~~~~~~~~~~~~L~~~~k~~L~~kV~ 556 (701)
T PTZ00272 478 PFIEQARRRGLEVLFMTEPIDEYVMQQVKDFEDKKFACLTKEGVHFEE-SEEEKQQREEEKAACEKLCKTMKEVLGDKVE 556 (701)
T ss_pred hHHHHHHhCCCeEEEeCCcHHHHHHHHHHhcCCCceEecccccccccc-cccchhhhhhhHHHHHHHHHHHHHHhCCccc
Confidence 999999999999999999999999999999999999999999988764 2222222223445799999999999999999
Q ss_pred EEEEeecCCCCCEEEEeCCCCccHHHHHHHHHHhcccCccccccCCCceEEeCCCChHHHHHHHhhhccCCchhHHHHHH
Q 005370 557 KVVVSDRIVDSPCCLVTGEYGWSANMERIMKAQALRDNSMSSYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDLTM 636 (699)
Q Consensus 557 ~V~vs~rL~dsP~~lv~~e~g~s~~mer~mka~~~~~~~~~~~~~~k~~LeiNp~HplIk~L~~~~~~~~~~~~~~~~~~ 636 (699)
+|++|+||++||||||++++|+|++|+|||++|++++..+..++.++++|||||+||||++|+++...+.+++.++++|+
T Consensus 557 ~VkvS~RL~~sPa~lv~~e~g~s~~Merimkaq~~~~~~~~~~~~~kkiLEINP~HpiIk~L~~~~~~~~~~~~~~~la~ 636 (701)
T PTZ00272 557 KVIVSERLSTSPCILVTSEFGWSAHMEQIMRNQALRDSSMAQYMMSKKTMELNPRHPIIKELRRRVGADENDKAVKDLVF 636 (701)
T ss_pred EEEEeccCCCCCeEEEecccchhHHHHHHHHhcccccccccccccCCeEEEECCCCHHHHHHHHHhhcccchHHHHHHHH
Confidence 99999999999999999999999999999999875432233345688999999999999999886545555667999999
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCccccc
Q 005370 637 LLFETALLTSGFSLDDPNTFGSRIHRMLKLGLSIDEEENA 676 (699)
Q Consensus 637 ~Lyd~AlL~~G~~l~d~~~f~~r~~~ll~~~l~~~~~~~~ 676 (699)
||||+|||++|++++||+.|++|+|+||..+|+++.+++.
T Consensus 637 ~LyD~AlL~~G~~leDp~~f~~Ri~~lL~~~l~~~~~~~~ 676 (701)
T PTZ00272 637 LLFDTSLLTSGFQLEDPTGYAERINRMIKLGLSLDEEEEE 676 (701)
T ss_pred HHHHHHHHhCCCCccCHHHHHHHHHHHHHHhcCCCccccc
Confidence 9999999999999999999999999999879999977543
No 2
>PTZ00130 heat shock protein 90; Provisional
Probab=100.00 E-value=3.4e-166 Score=1419.91 Aligned_cols=668 Identities=43% Similarity=0.732 Sum_probs=589.8
Q ss_pred ccccchhhcHHHHHHHHHhcCCCCchHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCC
Q 005370 4 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGI 83 (699)
Q Consensus 4 ~e~~~F~~d~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 83 (699)
.++|+||+|+++||+||+++||||+++|||||||||+|||+|+|+++++++.+......+.|+|..|.++++|+|+||||
T Consensus 65 ~e~~~FQaEv~~Lldiii~sLYS~keIFLRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D~~~~tLtI~DnGI 144 (814)
T PTZ00130 65 IEQHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGI 144 (814)
T ss_pred cceeehHHHHHHHHHHHhhccCCCCCceeehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEECCCCCEEEEEECCC
Confidence 47899999999999999999999999999999999999999999999999888777778999999999999999999999
Q ss_pred CCCHHHHHHHHhhhhccCchhHHHHHhc-CCCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccCceEEEEeC
Q 005370 84 GMTKADLVNNLGTIARSGTKEFMEALQA-GADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRD 162 (699)
Q Consensus 84 GMt~~el~~~l~~Ia~S~~~~f~~~~~~-~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~~~~~i~~~ 162 (699)
|||++||.++||+||+||++.|+++++. +.+..+||||||||||||||||+|+|+||+.++.++.|+|+|+|.|+|.+.
T Consensus 145 GMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~Trs~~~~~~~W~s~g~g~y~I~e~ 224 (814)
T PTZ00130 145 GMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNNDEQYIWESTADAKFTIYKD 224 (814)
T ss_pred CCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccchhheeeecCEEEEEEcCCCCceEEEEECCCCcEEEEEC
Confidence 9999999999999999999999998874 245789999999999999999999999998778899999999999999986
Q ss_pred CCCCCCCCceEEEEEeccchhhcccHHHHHHHHHHhcCCCccceEeecccccccccCCCCCCCcc-c--cccCCccccch
Q 005370 163 VSGEPLGRGTKMTLYLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEISDDEDDEPK-K--EEEGDVEDVDE 239 (699)
Q Consensus 163 ~~~~~~~~GT~I~L~lk~~~~~~~~~~~l~~ii~~ys~fl~~pI~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~ 239 (699)
+++...++||+|+|||+++..+|++.++|++||++||.|++|||++++..+..+++++++....+ + ++++++++.+
T Consensus 225 ~~~~~~~rGT~I~LhLked~~efl~~~~ik~likkYS~fI~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~- 303 (814)
T PTZ00130 225 PRGSTLKRGTRISLHLKEDATNLMNDKKLVDLISKYSQFIQYPIYLLHENVYTEEVLADIAKEMENDPNYDSVKVEETD- 303 (814)
T ss_pred CCCCCCCCCcEEEEEECCchhhhccHHHHHHHHHHhhccCCCCEEEccccccccccccccccccccccccccccccccc-
Confidence 54445689999999999999999999999999999999999999998654333333222110000 0 0111111111
Q ss_pred HHHhhhcccccccccccceeeeccCCCCccCCCCCCCHHHHHHHHHHhhcCccCCceeeeeecccceeeEEEEEecCCCC
Q 005370 240 EKEKEGKKKKKIKEVSHEWQLINKQKPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAVLFVPKRAP 319 (699)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~iN~~~piW~~~~~~v~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p 319 (699)
+++++++++++...+|++||+.+|||+|++++||+|+|++|||++++++++||+|+||++||+++|+||||||+++|
T Consensus 304 ---~~~~k~k~v~~~~~~~e~vN~~~aiW~r~~~eit~EeY~eFYk~l~~~~~dPl~~iH~~~Eg~~~~~~LLYIP~~ap 380 (814)
T PTZ00130 304 ---DPNKKTRTVEKKVKKWKLMNEQKPIWLRPPKELTDEDYKKFFSVLSGFNDEPLYHIHFFAEGEIEFKCLIYIPSRAP 380 (814)
T ss_pred ---cccccccccccceeeeeeeccCCCcccCCcccCCHHHHHHHHHHhcCCccCCceeeeeccCCCeeEEEEEEecCCCc
Confidence 11234566666677899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhhcccceEEEeeceeccccccccccccccceeeeecCCCCCCccchhhhcccHHHHHHHHHHHHHHHHHHHHHh
Q 005370 320 FDLFDTRKKMNNIKLYVRRVFIMDNCEELIPEYLGFIKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIA 399 (699)
Q Consensus 320 ~~~~~~~~~~~~i~LY~~rv~I~d~~~~llP~~l~Fv~GvVDS~dLplnvSRE~lq~~~~l~~i~~~l~~k~~~~L~~la 399 (699)
+.+|.....+++|+||||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|.+++
T Consensus 381 ~~~~~~~~~~~~ikLYvrrVfI~d~~~dLLP~wL~FVkGVVDSeDLPLNVSRE~LQ~n~~l~~Irk~l~kkil~~L~~l~ 460 (814)
T PTZ00130 381 SINDHLFTKQNSIKLYVRRVLVADEFVEFLPRYMSFVKGVVDSDDLPLNVSREQLQQNKILKAVSKRIVRKILDTFRTLY 460 (814)
T ss_pred cchhhhhhccCceEEEEeeEEeecchhhhhhHHHhhhEEEeecCCCCCccCHHHHccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 98775323579999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred h------------------------------CHHHHHHHHHHHhHHhhccccCChhhHHHHhchhcccccCCCCceecHH
Q 005370 400 E------------------------------NKEDYNKFYDAFSKNLKLGIHEDSQNRAKLADLLRYHSTKSSEEFTSLK 449 (699)
Q Consensus 400 ~------------------------------d~e~y~~f~~~~~~~lK~G~~eD~~~~e~l~~lLrf~ss~~~~~~~sL~ 449 (699)
+ ||++|.+||++||.+||+||++|..|+++|++||||+||.+ ++++||+
T Consensus 461 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~d~e~Y~kF~~~fg~~LK~Gv~eD~~nre~l~~LLrF~Ss~~-~~~~SL~ 539 (814)
T PTZ00130 461 KEGKKNKETLRAELAKETDEEKKKEIQKKINEPSTYKLIYKEYRKYLKTGCYEDDINRNKIVKLLLFKTMLH-PKSISLD 539 (814)
T ss_pred hhccccchhcccccccccccccccccccccccHHHHHHHHHHHHHHHHhHhhcCHHHHHHHHHhheeeeCCC-CCccCHH
Confidence 5 47899999999999999999999999999999999999986 4689999
Q ss_pred HHHHhhcCCCceEEEEeCCCHHHHhcChhhHHHHHcCCEEEEecCCchHHHHHHHhhccCceeEeccccCCCCCcchHHH
Q 005370 450 DYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLYMVDAIDEYAVGQLKEYEGKKLVSATKEGLKLDDETEEE 529 (699)
Q Consensus 450 eY~~rm~~~Q~~IyY~~~~~~~~~~~sp~lE~~~~kG~eVL~l~dpiDE~~l~~L~~~~~~~f~~V~~~~~~l~~~~~~~ 529 (699)
+|++||+++|+.|||++|++++++++|||+|.|+++|||||||+|||||+|+++|.+|+|++|++|++++++++. .+++
T Consensus 540 eYv~rMke~Qk~IYY~t~~s~~~~~~SP~lE~~~~kg~EVL~l~d~iDE~~l~~L~e~~gk~~~sV~~~~~~~~~-~~~e 618 (814)
T PTZ00130 540 TYIENMKPDQKFIYYASGDSYEYLSKIPQLQIFKKKNIDVVFLTESVDESCVQRVQEYDGKKFKSIQKGEITFEL-TEDE 618 (814)
T ss_pred HHHhhhccCCeEEEEEeCCCHHHHhcChHHHHHHhCCCeEEEeCCchHHHHHHHHHHhcCceEEEeccccccccc-cccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988754 2222
Q ss_pred HhhHHHhHHhHHHHHHHHHHHhCCcccEEEEeecCCCCCEEEEeCCCCccHHHHHHHHHHhcccCccccccCCCceEEeC
Q 005370 530 KKKKEEKKKSFENLCKTMKDILGDRVEKVVVSDRIVDSPCCLVTGEYGWSANMERIMKAQALRDNSMSSYMSSKKTMEIN 609 (699)
Q Consensus 530 ~~~~~~~~~e~~~L~~~~k~~L~~~V~~V~vs~rL~dsP~~lv~~e~g~s~~mer~mka~~~~~~~~~~~~~~k~~LeiN 609 (699)
++..+...+++++|++|+++.|+++|.+|++|+||++||||||++++|+|++|+|||++|.+. +.+..++.++++||||
T Consensus 619 ~~~~~~~~~~~~~L~~~~k~~L~~~V~~V~vS~RL~~sPa~lv~~e~g~s~~Merimka~~~~-~~~~~~~~~k~iLEIN 697 (814)
T PTZ00130 619 KKKEEKVKKMYKALIDVISDTLRNQIFKVEISRRLVDAPCAVVSTEWGLSGQMEKLMKINVNN-SDQIKAMSGQKILEIN 697 (814)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhcCcccEEEEeccCCCCCcEEEecCccccHHHHHHHHHhhcc-ccccccccCCeEEEEC
Confidence 222223345699999999999999999999999999999999999999999999999998642 2222355689999999
Q ss_pred CCChHHHHHHHhhhccCCchhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCcccccCC
Q 005370 610 PDNGIMEELRKRAEADKNDKSVKDLTMLLFETALLTSGFSLDDPNTFGSRIHRMLKLGLSIDEEENADE 678 (699)
Q Consensus 610 p~HplIk~L~~~~~~~~~~~~~~~~~~~Lyd~AlL~~G~~l~d~~~f~~r~~~ll~~~l~~~~~~~~~~ 678 (699)
|+||||++|+.+...+++++.++++|++||+||+|++|++++||+.|++||++||..+|++++.++...
T Consensus 698 p~Hpii~~L~~~~~~~~~~~~~~~~a~~Lyd~AlL~~G~~l~DP~~fa~ri~~ll~~~l~~~~~~~~~~ 766 (814)
T PTZ00130 698 PDHPIMIDLLKRSVSNPKDSQLTESIKIIYQSAKLASGFDLEDTADLAQIVYDHINQKLGVDNNLKIDD 766 (814)
T ss_pred CCCHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCccccccc
Confidence 999999999876544445566999999999999999999999999999999999999999997754443
No 3
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-168 Score=1326.05 Aligned_cols=674 Identities=55% Similarity=0.927 Sum_probs=620.2
Q ss_pred cccccchhhcHHHHHHHHHhcCCCCchHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCC
Q 005370 3 DTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSG 82 (699)
Q Consensus 3 ~~e~~~F~~d~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG 82 (699)
+.++|+||+++.|||+||+|+||+|+++||||||+||+||++|+|+++|+|+..++...++.|.|..|+.++.|.|.|.|
T Consensus 71 kaeKf~FQaEVnRmMklIINSLY~NKeIFLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~Dke~klLhi~DtG 150 (785)
T KOG0020|consen 71 KAEKFEFQAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKADKEKKLLHITDTG 150 (785)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeechhhCeeeEeccc
Confidence 45899999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred CCCCHHHHHHHHhhhhccCchhHHHHHhcCCCC-----CccccccchhhheeeecCeEEEEEecCCCceEEEEEccCceE
Q 005370 83 IGMTKADLVNNLGTIARSGTKEFMEALQAGADV-----SMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSF 157 (699)
Q Consensus 83 iGMt~~el~~~l~~Ia~S~~~~f~~~~~~~~~~-----~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~~~~ 157 (699)
||||++||.++||+||+||+.+|+++++..++. .+||||||||||+|+|||+|.|+|+++++.+|+|+|++. .|
T Consensus 151 iGMT~edLi~NLGTIAkSGTs~Fl~Km~~~~~~~~~~~dlIGQFGVGFYsAfLVAD~vvVtsKhNdD~QyiWESdan-~F 229 (785)
T KOG0020|consen 151 IGMTREDLIKNLGTIAKSGTSEFLEKMQDSGDSEGLMNDLIGQFGVGFYSAFLVADRVVVTSKHNDDSQYIWESDAN-SF 229 (785)
T ss_pred CCccHHHHHHhhhhhhcccHHHHHHHhhccccchhhHHHHHHhcchhhhhhhhhcceEEEEeccCCccceeeeccCc-ce
Confidence 999999999999999999999999999864333 689999999999999999999999999999999999975 99
Q ss_pred EEEeCCCCCCCCCceEEEEEeccchhhcccHHHHHHHHHHhcCCCccceEeecccccccccCCCCCCCccccc-cCCccc
Q 005370 158 TVTRDVSGEPLGRGTKMTLYLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEISDDEDDEPKKEE-EGDVED 236 (699)
Q Consensus 158 ~i~~~~~~~~~~~GT~I~L~lk~~~~~~~~~~~l~~ii~~ys~fl~~pI~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 236 (699)
+|..++++++.++||.|+|+|++++.+|+++++|+++|++||+|+.|||++|..++++.+++-+++++++.+. +.+...
T Consensus 230 svseDprg~tL~RGt~ItL~LkeEA~dyLE~dtlkeLvkkYSqFINFpI~lWsSKt~~~E~pvEEe~~t~e~~~ed~ea~ 309 (785)
T KOG0020|consen 230 SVSEDPRGNTLGRGTEITLYLKEEAGDYLEEDTLKELVKKYSQFINFPISLWSSKTVEVEVPVEEEEETEEDSTEDKEAA 309 (785)
T ss_pred eeecCCCCCcccCccEEEEEehhhhhhhcchhHHHHHHHHHHHhcCCceeeeeccceeeecccccccccccccccchhhh
Confidence 9999999999999999999999999999999999999999999999999999988777776655444332111 111112
Q ss_pred cchHHHhhhcccccccccccceeeeccCCCCccCCCCCCCHHHHHHHHHHhhcCccCCceeeeeecccceeeEEEEEecC
Q 005370 237 VDEEKEKEGKKKKKIKEVSHEWQLINKQKPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAVLFVPK 316 (699)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~iN~~~piW~~~~~~v~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~ 316 (699)
+++++++ .++++++.+++++|+.+|..+|||+|+|++|+++||..||+++++++.+|++|+||.+||.++|++|||||.
T Consensus 310 vEEee~E-KpKTKKV~kT~wdWel~NdvKpIW~R~p~eV~EdEYt~FYkSlsKds~dPma~~HF~aEGeVtFksiLyVP~ 388 (785)
T KOG0020|consen 310 VEEEEEE-KPKTKKVEKTVWDWELLNDVKPIWLRKPKEVTEDEYTKFYKSLSKDSTDPMAYIHFTAEGEVTFKSILYVPK 388 (785)
T ss_pred hhhhhhc-cccccchhhcchhhhhhcccchhhccCchhcchHHHHHHHHhhhccccCccceeeeeccccEEEEEEEEeCC
Confidence 2222222 367888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchh--hhcccceEEEeeceeccccccccccccccceeeeecCCCCCCccchhhhcccHHHHHHHHHHHHHHHHH
Q 005370 317 RAPFDLFDT--RKKMNNIKLYVRRVFIMDNCEELIPEYLGFIKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEM 394 (699)
Q Consensus 317 ~~p~~~~~~--~~~~~~i~LY~~rv~I~d~~~~llP~~l~Fv~GvVDS~dLplnvSRE~lq~~~~l~~i~~~l~~k~~~~ 394 (699)
.+|.++|+. .+...+|+||||||||+|++.+++|.||+||+|||||+|||||||||+||++++|+.|++.|++|+++|
T Consensus 389 ~~P~~lf~~Yg~~~~dniKLYVrrVFItDeF~dmmPkYLsFikGvVDSDdLPLNVSrE~LQQHkllKvIkKKLvrK~LDm 468 (785)
T KOG0020|consen 389 KAPRDLFDEYGSKKSDNIKLYVRRVFITDEFHDMMPKYLSFIKGVVDSDDLPLNVSRETLQQHKLLKVIKKKLVRKVLDM 468 (785)
T ss_pred CCchHHHHHhccccccceeEEEEEEEecchHHHHhHHHHHHHhhccCcCcCcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999973 356799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCHHHHHH-HHHHHhHHhhccccCChhhHHHHhchhcccccCCCCceecHHHHHHhhcCCCceEEEEeCCCHHHH
Q 005370 395 FNEIAENKEDYNK-FYDAFSKNLKLGIHEDSQNRAKLADLLRYHSTKSSEEFTSLKDYVTRMKEGQKDIYYITGESKKAV 473 (699)
Q Consensus 395 L~~la~d~e~y~~-f~~~~~~~lK~G~~eD~~~~e~l~~lLrf~ss~~~~~~~sL~eY~~rm~~~Q~~IyY~~~~~~~~~ 473 (699)
|++++. ++|.. ||++||..||.|+++|+.||..||+||||.||.++++.+||++|++|||+.|+.|||++|.|+.++
T Consensus 469 ikKia~--e~~~d~FW~EFgtniKLGviED~sNr~rLAKLLrFqss~~~~~~TsLdqYveRMK~kQ~~IyymaGssr~e~ 546 (785)
T KOG0020|consen 469 IKKIAG--EKYDDIFWKEFGTNIKLGVIEDPSNRTRLAKLLRFQSSNHPTKITSLDQYVERMKEKQDKIYYMAGSSRKEV 546 (785)
T ss_pred HHHhhc--cccchHHHHHhccceeeeeeeCcccHHHHHHHHhhhccCCCCCcccHHHHHHHHhhccccEEEecCCcHhhh
Confidence 999975 56665 999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred hcChhhHHHHHcCCEEEEecCCchHHHHHHHhhccCceeEeccccCCCCCcchHHHHhhHHHhHHhHHHHHHHHHH-HhC
Q 005370 474 ENSPFLERLKKKGYEVLYMVDAIDEYAVGQLKEYEGKKLVSATKEGLKLDDETEEEKKKKEEKKKSFENLCKTMKD-ILG 552 (699)
Q Consensus 474 ~~sp~lE~~~~kG~eVL~l~dpiDE~~l~~L~~~~~~~f~~V~~~~~~l~~~~~~~~~~~~~~~~e~~~L~~~~k~-~L~ 552 (699)
..||++|.+.++|||||||++|+||+|+|.|.+|+|++|++|.++|++++. .+..++..+..+++|+||++|+|. +|.
T Consensus 547 E~sPfvERLlkKGyEVi~ltepVDEyciqalpe~d~KkFQNVaKEG~k~~~-~eK~Ke~~e~l~~~FepL~~W~k~~alk 625 (785)
T KOG0020|consen 547 EKSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKKFQNVAKEGVKFDK-SEKTKESHEALEEEFEPLTKWLKDKALK 625 (785)
T ss_pred ccCcHHHHHHhcCceEEEEcchhHHHHHHhhhhhcchhHhHHHhhhcccCc-ccchhHHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999999999999999999999999999999999999999987 555666677778899999999998 578
Q ss_pred CcccEEEEeecCCCCCEEEEeCCCCccHHHHHHHHHHhcccC---ccccccCCCceEEeCCCChHHHHHHHhhhccCCch
Q 005370 553 DRVEKVVVSDRIVDSPCCLVTGEYGWSANMERIMKAQALRDN---SMSSYMSSKKTMEINPDNGIMEELRKRAEADKNDK 629 (699)
Q Consensus 553 ~~V~~V~vs~rL~dsP~~lv~~e~g~s~~mer~mka~~~~~~---~~~~~~~~k~~LeiNp~HplIk~L~~~~~~~~~~~ 629 (699)
++|.+++||+||++|||++|++.+|||.+|+|+|++|+.+.+ .-..|+.+|++|||||+||||+.|+.+...|++++
T Consensus 626 d~ieka~vSqrL~~spcalVas~~GwsgNmERimksqa~~~~kD~~~~~Y~~qKkt~EINPRHPlirell~Ri~adeeD~ 705 (785)
T KOG0020|consen 626 DKIEKAVVSQRLTESPCALVASQYGWSGNMERIMKSQAYQKSKDPSKNYYASQKKTFEINPRHPLIRELLRRIAADEEDE 705 (785)
T ss_pred HHHHHHHHHHHhccCchhhhhhhccccccHHHHHHHhhhhccCCchhhHHhccCceeeeCCCChHHHHHHHHhhcCcccc
Confidence 999999999999999999999999999999999999987522 22236779999999999999999999999998889
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCcccccCCCCC
Q 005370 630 SVKDLTMLLFETALLTSGFSLDDPNTFGSRIHRMLKLGLSIDEEENADEDID 681 (699)
Q Consensus 630 ~~~~~~~~Lyd~AlL~~G~~l~d~~~f~~r~~~ll~~~l~~~~~~~~~~~~~ 681 (699)
.+++.|.+||.+|+|.+||.+.|+..|+.||.++|+++|+|++++.+++++.
T Consensus 706 t~~d~A~lmf~TAtlrSGf~L~d~~~fadrIe~~lr~sL~is~Da~ve~e~e 757 (785)
T KOG0020|consen 706 TVKDTAVLMFETATLRSGFILQDTKDFADRIENMLRQSLNISPDAQVEEEIE 757 (785)
T ss_pred hHHHHHHHHHHHHHhhcCccccchHHHHHHHHHHHHhhcCCCcccccccccc
Confidence 9999999999999999999999999999999999999999999877777543
No 4
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-161 Score=1336.55 Aligned_cols=617 Identities=52% Similarity=0.831 Sum_probs=572.4
Q ss_pred CCcccccchhhcHHHHHHHHHhcCCCCchHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEe
Q 005370 1 MADTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVD 80 (699)
Q Consensus 1 m~~~e~~~F~~d~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~D 80 (699)
|...+++.||+|+++||++|+|+||||++||||||||||+|||+|+|+.++++|......++++|+|.+|++++||+|+|
T Consensus 1 ~~~~e~~~Fq~ev~~ll~lmihSlYSnKeIFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk~~kTLtI~D 80 (623)
T COG0326 1 MMEQETRGFQAEVKQLLDLMIHSLYSNKEIFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDKDNKTLTISD 80 (623)
T ss_pred CCchhhhhhhHHHHHHHHHHHHhccCCcHHHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcccCCEEEEEe
Confidence 44568999999999999999999999999999999999999999999999999988877888999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhhhccCchhHHHHHhcC-CCCCccccccchhhheeeecCeEEEEEecCC-CceEEEEEccCceEE
Q 005370 81 SGIGMTKADLVNNLGTIARSGTKEFMEALQAG-ADVSMIGQFGVGFYSAYLVAERVVVTTKHND-DEQYIWESQAGGSFT 158 (699)
Q Consensus 81 nGiGMt~~el~~~l~~Ia~S~~~~f~~~~~~~-~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~-~~~~~w~~~~~~~~~ 158 (699)
||||||++|+.++|||||+||+++|++.++++ .+.++||||||||||||||||+|+|+|++.+ +.++.|+|+|+|.|+
T Consensus 81 NGIGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~T~~~~~~~~~~W~S~g~g~yt 160 (623)
T COG0326 81 NGIGMTKDEVIENLGTIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFMVADKVTVITRSAGEDEAYHWESDGEGEYT 160 (623)
T ss_pred CCCCCCHHHHHHHHHHhhhccHHHHHHHhccccccccccccccchhhheeeeeeeEEEEeccCCCCcceEEEEcCCCceE
Confidence 99999999999999999999999999998755 3688999999999999999999999999865 677899999999999
Q ss_pred EEeCCCCCCCC-CceEEEEEeccchhhcccHHHHHHHHHHhcCCCccceEeecccccccccCCCCCCCccccccCCcccc
Q 005370 159 VTRDVSGEPLG-RGTKMTLYLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEISDDEDDEPKKEEEGDVEDV 237 (699)
Q Consensus 159 i~~~~~~~~~~-~GT~I~L~lk~~~~~~~~~~~l~~ii~~ys~fl~~pI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (699)
|++.. ..+ +||+|+|||+++..+|++.|+|+++|++||.|+++||++.++...++
T Consensus 161 v~~~~---~~~~~GT~I~L~Lk~~e~efl~~~rl~~ivkkYSd~i~~PI~~~~~~~~~~--------------------- 216 (623)
T COG0326 161 VEDID---KEPRRGTEITLHLKEEEDEFLEEWRLREIVKKYSDHIAYPIYIEGEKEKDE--------------------- 216 (623)
T ss_pred Eeecc---CCCCCCcEEEEEECCchHHHhhhhHHHHHHHHHhcccccceEEeeeccccc---------------------
Confidence 99863 334 69999999999999999999999999999999999999976432100
Q ss_pred chHHHhhhcccccccccccceeeeccCCCCccCCCCCCCHHHHHHHHHHhhcCccCCceeeeeecccceeeEEEEEecCC
Q 005370 238 DEEKEKEGKKKKKIKEVSHEWQLINKQKPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAVLFVPKR 317 (699)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~iN~~~piW~~~~~~v~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~ 317 (699)
...+|++||.++|||+|+++++++++|.+||++++++|++||.|+|+++||.+++++|||||++
T Consensus 217 ----------------~~~~~e~iN~~~alW~r~ksei~~eeY~eFYk~~~~d~~~Pl~~~h~~~EG~~ey~~ll~iP~~ 280 (623)
T COG0326 217 ----------------EVIEWETINKAKALWTRNKSEITDEEYKEFYKHLAHDFDDPLLWIHNKVEGRLEYTALLFIPSK 280 (623)
T ss_pred ----------------cchhHHHhccccCcccCChhhCChHHHHHHHHHhhcccCCCeEEEecccccceEEEEEEEccCC
Confidence 0235899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchhhhcccceEEEeeceeccccccccccccccceeeeecCCCCCCccchhhhcccHHHHHHHHHHHHHHHHHHHH
Q 005370 318 APFDLFDTRKKMNNIKLYVRRVFIMDNCEELIPEYLGFIKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNE 397 (699)
Q Consensus 318 ~p~~~~~~~~~~~~i~LY~~rv~I~d~~~~llP~~l~Fv~GvVDS~dLplnvSRE~lq~~~~l~~i~~~l~~k~~~~L~~ 397 (699)
+||++|.. +.++|++||||||||||+|.+|||+||+||+|||||+|||||||||+||+|++++.||+.|++||+++|.+
T Consensus 281 aPfdl~~~-~~k~glkLYv~rVfI~Dd~~~llP~yl~Fv~GvIDS~DLpLNvSRE~LQ~n~~l~~Irk~l~kkvl~~L~~ 359 (623)
T COG0326 281 APFDLFRR-DRKRGLKLYVNRVFIMDDAEDLLPNYLRFVRGVIDSEDLPLNVSREILQQNRILAAIRKALTKKVLSMLEK 359 (623)
T ss_pred CCcccccc-cccCCcEEEEeeeEEeCChhhhhhHHHhhheeeeecCCCCcccCHHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999974 35799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhh-CHHHHHHHHHHHhHHhhccccCChhhHHHHhchhccccc-CCCCceecHHHHHHhhcCCCceEEEEeCCCHHHHhc
Q 005370 398 IAE-NKEDYNKFYDAFSKNLKLGIHEDSQNRAKLADLLRYHST-KSSEEFTSLKDYVTRMKEGQKDIYYITGESKKAVEN 475 (699)
Q Consensus 398 la~-d~e~y~~f~~~~~~~lK~G~~eD~~~~e~l~~lLrf~ss-~~~~~~~sL~eY~~rm~~~Q~~IyY~~~~~~~~~~~ 475 (699)
||+ |||+|.+||++||.+||+|+++|..|+++|++||||.|| .+..+++||+||++||+++|+.|||++|++..++++
T Consensus 360 La~~~~e~y~~f~~~fg~~LKeG~~eD~~n~e~l~~lLrf~St~~~~~~~~sl~eYv~rmke~q~~IyY~tges~~~~~~ 439 (623)
T COG0326 360 LAKDDPEKYRKFWKQFGLVLKEGLYEDFENKEKLLDLLRFRSTSDSGEKTVSLEEYVSRMKEGQKQIYYITGESYQAAKG 439 (623)
T ss_pred HHhcCHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhEecccCCCccCcccHHHHHHhcccccceeEEeccccHHHHhc
Confidence 998 799999999999999999999999999999999999994 445679999999999999999999999999999999
Q ss_pred ChhhHHHHHcCCEEEEecCCchHHHHHHHhhccCceeEeccccCCCCCcchHHHHhhHHHhHHhHHHHHHHHHHHhCCcc
Q 005370 476 SPFLERLKKKGYEVLYMVDAIDEYAVGQLKEYEGKKLVSATKEGLKLDDETEEEKKKKEEKKKSFENLCKTMKDILGDRV 555 (699)
Q Consensus 476 sp~lE~~~~kG~eVL~l~dpiDE~~l~~L~~~~~~~f~~V~~~~~~l~~~~~~~~~~~~~~~~e~~~L~~~~k~~L~~~V 555 (699)
||++|.|+++|||||||+|+||+++|..+.+|+|++|++|++++++++...++++...++.+.+|++|++++|+.|+++|
T Consensus 440 sP~lE~~k~kgieVL~l~d~iDe~~l~~~~e~egk~~~~i~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~k~~L~~~v 519 (623)
T COG0326 440 SPHLELFKAKGIEVLLLTDRIDEFMLTMLPEFEGKPFKSITKGDLDLELLEEEDEADSEEEKKEFKPLLERVKEILGDKV 519 (623)
T ss_pred CchHHHHHhcCcEEEecCccchHHHhhhhhhccCCcceeeccccccccccchhhhhhhHHHHHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999887663333223445566779999999999999999
Q ss_pred cEEEEeecCCCCCEEEEeCCCCccHHHHHHHHHHhcccCccccccCCCceEEeCCCChHHHHHHHhhhccCCchhHHHHH
Q 005370 556 EKVVVSDRIVDSPCCLVTGEYGWSANMERIMKAQALRDNSMSSYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDLT 635 (699)
Q Consensus 556 ~~V~vs~rL~dsP~~lv~~e~g~s~~mer~mka~~~~~~~~~~~~~~k~~LeiNp~HplIk~L~~~~~~~~~~~~~~~~~ 635 (699)
++|++|+||+++|||++++..+++.+|+|+|++|++. .+..+++|||||+||||++|..+. +.+.+++++
T Consensus 520 k~Vr~s~rl~dspa~l~~~~~~~~~~m~r~l~~~~~~------~~~~k~ilEiNp~h~lv~~L~~~~----d~~~~~~~~ 589 (623)
T COG0326 520 KDVRLSHRLTDSPACLTTDGADLSTQMERLLKAQGQE------VPESKKILEINPNHPLVKKLASLE----DEASVADLV 589 (623)
T ss_pred ceeEeecccCCCcceeecCccchhHHHHHHHHhcccc------CCccccceeeCcccHHHHHHHhcc----cHHHHHHHH
Confidence 9999999999999999999999999999999998653 225899999999999999999876 456799999
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcC
Q 005370 636 MLLFETALLTSGFSLDDPNTFGSRIHRMLKLGL 668 (699)
Q Consensus 636 ~~Lyd~AlL~~G~~l~d~~~f~~r~~~ll~~~l 668 (699)
++||+||||++|++++||..|+.|+|++|.+++
T Consensus 590 ~llydqAll~eg~~~~dp~~F~~rln~ll~~~~ 622 (623)
T COG0326 590 ELLYDQALLAEGGPLEDPAAFIERLNDLLSRLL 622 (623)
T ss_pred HHHHHHHHHhCCCCccCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999998765
No 5
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-159 Score=1296.25 Aligned_cols=617 Identities=55% Similarity=0.902 Sum_probs=591.9
Q ss_pred cccccchhhcHHHHHHHHHhcCCCCchHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCC
Q 005370 3 DTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSG 82 (699)
Q Consensus 3 ~~e~~~F~~d~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG 82 (699)
.+|+|.||+++++||+++++++||++++||||||+||+||++|+||.++++|... .+++.|+|.+++++++|+|.|+|
T Consensus 33 ~~et~~fqaE~~qLm~lii~s~YS~kEvFlRELISNaSDAldKiRy~~lt~~~~~--~~~l~I~i~~nk~~~tlti~DtG 110 (656)
T KOG0019|consen 33 PQETHEFQAETNQLMDIVAKSLYSHKEVFLRELISNASDALEKLRYLELKGDEKA--LPELEIRIITNKDKRTITIQDTG 110 (656)
T ss_pred cccceehhhhHHhHHHHHHHHhhcchHHHHHhhhccccchHHHHHHHhhcCcccc--ccceeEEeccCCCcceEEEEecC
Confidence 3589999999999999999999999999999999999999999999999999765 67889999999999999999999
Q ss_pred CCCCHHHHHHHHhhhhccCchhHHHHHh-cCCCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccCceEEEEe
Q 005370 83 IGMTKADLVNNLGTIARSGTKEFMEALQ-AGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTR 161 (699)
Q Consensus 83 iGMt~~el~~~l~~Ia~S~~~~f~~~~~-~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~~~~~i~~ 161 (699)
||||++||.++||+||+||++.|++.++ .+.+.++|||||+||||+|+||++|+|+|++.++.++.|++.++|+|+|..
T Consensus 111 IGMTk~dLvnnLGTIAkSGtK~Fmealkea~ad~~~IGQFGvGFYSaylVAdkV~V~tk~~~~e~y~Wes~~~gs~~v~~ 190 (656)
T KOG0019|consen 111 IGMTKEDLVNNLGTIAKSGSKAFLEALKEAEAESNLIGQFGVGFYSAFMVADRVVVTTRHPADEGLQWTSNGRGSYEIAE 190 (656)
T ss_pred CCcCHHHHHhhhhhhhhcccHHHHHHHHhcccchhhhhhcccchhhhhhhhheeEEeeccCCCcceeeecCCCCceEEee
Confidence 9999999999999999999999999999 577889999999999999999999999999988889999999999999998
Q ss_pred CCCCCCCCCceEEEEEeccchhhcccHHHHHHHHHHhcCCCccceEeecccccccccCCCCCCCccccccCCccccchHH
Q 005370 162 DVSGEPLGRGTKMTLYLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEISDDEDDEPKKEEEGDVEDVDEEK 241 (699)
Q Consensus 162 ~~~~~~~~~GT~I~L~lk~~~~~~~~~~~l~~ii~~ys~fl~~pI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (699)
++ ...+||+|+|||+.+..+|+++.+|+++|++||.|+.|||++++
T Consensus 191 ~~---~~~rGTki~l~lKe~~~ey~ee~rikeiVKK~S~Fv~yPI~l~~------------------------------- 236 (656)
T KOG0019|consen 191 AS---GLRTGTKIVIHLKEGDCEFLEEKRIKEVVKKYSNFVSYPIYLNG------------------------------- 236 (656)
T ss_pred cc---CccccceEEeeehhhhhhhccHhHHHHHHhhccccccccchhhh-------------------------------
Confidence 53 38999999999999888999999999999999999999999986
Q ss_pred HhhhcccccccccccceeeeccCCCCccCCCCCCCHHHHHHHHHHhhcCccCCceeeeeecccceeeEEEEEecCCCCCC
Q 005370 242 EKEGKKKKKIKEVSHEWQLINKQKPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAVLFVPKRAPFD 321 (699)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~iN~~~piW~~~~~~v~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p~~ 321 (699)
+.+|..+|||+|+|.+||.|+|.+|||+++++|++|+++.||++||+++|++|||||.++|++
T Consensus 237 -----------------ek~N~tKpiW~rnp~dit~eey~eFYksl~ndw~d~lav~hf~~eg~lefrail~vP~rap~~ 299 (656)
T KOG0019|consen 237 -----------------ERVNNLKAIWTMNPKEVNEEEHEEFYKSVSGDWDDPLYVLHFKTDGPLSIRSIFYIPKRAPNS 299 (656)
T ss_pred -----------------hhhhccCcccccCchhhhHHHHHHHHHhhcccccchhhHhhhccccceEEEEEEeccccCcch
Confidence 348999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhcccceEEEeeceeccccccccccccccceeeeecCCCCCCccchhhhcccHHHHHHHHHHHHHHHHHHHHHhhC
Q 005370 322 LFDTRKKMNNIKLYVRRVFIMDNCEELIPEYLGFIKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAEN 401 (699)
Q Consensus 322 ~~~~~~~~~~i~LY~~rv~I~d~~~~llP~~l~Fv~GvVDS~dLplnvSRE~lq~~~~l~~i~~~l~~k~~~~L~~la~d 401 (699)
+|...+.++|++||+|||||+++|.+++|+||+||+|||||+|||||+|||+||+++++++||+.|++|+++++.++|+|
T Consensus 300 lF~~~kk~n~i~Ly~rrv~I~d~~~~lipe~l~fv~gvVdSeDlPLNiSremlQ~~~i~k~~rk~l~~k~l~~~~e~a~d 379 (656)
T KOG0019|consen 300 MFDMRKKKNGIKLYARRVLITDDAGDLIPEWLRFVRGVVDSEDIPLNLSREMLQENAVLRKLRKVLPQKILEMFQDLAKD 379 (656)
T ss_pred hhhhhhccCceEEEEEEEecCchhHHHHHHHhchheeccccccCccchhHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99987778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHhhccccCChhhHHH-HhchhcccccCCCCceecHHHHHHhhcCCCceEEEEeCCCHHHHhcChhhH
Q 005370 402 KEDYNKFYDAFSKNLKLGIHEDSQNRAK-LADLLRYHSTKSSEEFTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLE 480 (699)
Q Consensus 402 ~e~y~~f~~~~~~~lK~G~~eD~~~~e~-l~~lLrf~ss~~~~~~~sL~eY~~rm~~~Q~~IyY~~~~~~~~~~~sp~lE 480 (699)
+++|++||++||.+||+|+++|.+|+.+ +++||||+||+++++++||++|+.||+++|+.|||++|+++.++++|||+|
T Consensus 380 ~e~Y~kFy~~f~~~lk~gi~e~s~~~~k~~a~lLry~ss~s~~~~~Sl~dYv~rm~~~qk~iyyi~~~s~~~~~~sp~~E 459 (656)
T KOG0019|consen 380 AEKYKKFFKNYGLFLKEGIVTASEQQVKEIAKLLRYESSKSGEGATSLDDYVERMREGQKNIYYITAPNRQLAESSPYYE 459 (656)
T ss_pred HHHHHHHHHHHhhhhhhcccchhhhhhhHHHHHhhhhccccccccccHHHHHHhhcccccceEEeccchhhhhhcchHHH
Confidence 9999999999999999999999999999 999999999999888999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEEecCCchHHHHHHHhhccCceeEeccccCCCCCcchHHHHhhHHHhHHhHHHHHHHHHHHhCCcccEEEE
Q 005370 481 RLKKKGYEVLYMVDAIDEYAVGQLKEYEGKKLVSATKEGLKLDDETEEEKKKKEEKKKSFENLCKTMKDILGDRVEKVVV 560 (699)
Q Consensus 481 ~~~~kG~eVL~l~dpiDE~~l~~L~~~~~~~f~~V~~~~~~l~~~~~~~~~~~~~~~~e~~~L~~~~k~~L~~~V~~V~v 560 (699)
.++++|+|||||++|+||+++++|.+|+|++|++|+++++++++ +++++...++...+|+.||+|+|+.|+++|++|++
T Consensus 460 ~~k~~~~evly~~ep~DE~~~~~Lk~~~~k~lVsvtkEglel~e-~ee~~~k~ee~k~efe~lck~mK~iL~~kVekV~v 538 (656)
T KOG0019|consen 460 AFKKKNYEVLFMYEPADEVVLLGLKEFKGKKLVSVTKEGVELPE-DDEEKAKDEESKKEFEELCKWMKEILGSKVEKVTV 538 (656)
T ss_pred HHHhcCceeEeeeccHHHHHHHhhhhhcccceeccchhhccCCc-cchhHHHHHHHHHHHHHHHHHHHHHhcCceEEEEe
Confidence 99999999999999999999999999999999999999999985 55555555666779999999999999999999999
Q ss_pred eecCCCCCEEEEeCCCCccHHHHHHHHHHhcccCccccccCCCceEEeCCCChHHHHHHHhhhccCCchhHHHHHHHHHH
Q 005370 561 SDRIVDSPCCLVTGEYGWSANMERIMKAQALRDNSMSSYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDLTMLLFE 640 (699)
Q Consensus 561 s~rL~dsP~~lv~~e~g~s~~mer~mka~~~~~~~~~~~~~~k~~LeiNp~HplIk~L~~~~~~~~~~~~~~~~~~~Lyd 640 (699)
|+||+++||||+++++||+++|+|+|+||+..++...++|.++++|||||+||||+.|.++..++.++ .+++++.|||+
T Consensus 539 s~RlvssPc~I~t~~~gwsAnmeriMkAqal~d~s~~~ym~~kk~lEINP~hpivk~L~~~~~~dk~d-~~k~lv~llfe 617 (656)
T KOG0019|consen 539 NNRLVSHPAMITTLEYGWAARMERIMKAQALTDNETMGYMKAKKHLEINPDHPLVKTLRQLRESDKND-TAKDLVEQLYE 617 (656)
T ss_pred cCcccCCceEEEecccccchhHHHHHhhhhccccChhhhccccceeeeCCCChHHHHHHHHHhcCcch-hHHHHHHHHHH
Confidence 99999999999999999999999999999998887778899999999999999999999999888776 89999999999
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCccc
Q 005370 641 TALLTSGFSLDDPNTFGSRIHRMLKLGLSIDEEE 674 (699)
Q Consensus 641 ~AlL~~G~~l~d~~~f~~r~~~ll~~~l~~~~~~ 674 (699)
+|||++|+.++||+.|+.|+|+||..+|+++++.
T Consensus 618 tALlssGfsl~dP~~~~~ri~~ml~~~l~~~e~~ 651 (656)
T KOG0019|consen 618 TALISAGFSLDDPQTMVGRINRLLKSGLGRDEDE 651 (656)
T ss_pred HHHHHcCCCcCChHHHhhHHHHHHHHHhccCCCc
Confidence 9999999999999999999999999999998774
No 6
>PRK05218 heat shock protein 90; Provisional
Probab=100.00 E-value=5.3e-141 Score=1214.05 Aligned_cols=606 Identities=50% Similarity=0.825 Sum_probs=556.8
Q ss_pred ccccchhhcHHHHHHHHHhcCCCCchHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCC
Q 005370 4 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGI 83 (699)
Q Consensus 4 ~e~~~F~~d~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 83 (699)
.|+++||+|+++||+||+++||||+.+|||||||||+|||+++|+.+++++....+..+++|+|.++.++++|+|+|||+
T Consensus 3 ~e~~~Fq~e~~~ll~ll~~~LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnG~ 82 (613)
T PRK05218 3 METGEFQAEVKQLLHLMIHSLYSNKEIFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDKEARTLTISDNGI 82 (613)
T ss_pred cceeehhHhHHHHHHHHhhhhcCCchHHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcCCCCeEEEEECCC
Confidence 58999999999999999999999999999999999999999999999998877666678899999998888999999999
Q ss_pred CCCHHHHHHHHhhhhccCchhHHHHHhcC--CCCCccccccchhhheeeecCeEEEEEecCC--CceEEEEEccCceEEE
Q 005370 84 GMTKADLVNNLGTIARSGTKEFMEALQAG--ADVSMIGQFGVGFYSAYLVAERVVVTTKHND--DEQYIWESQAGGSFTV 159 (699)
Q Consensus 84 GMt~~el~~~l~~Ia~S~~~~f~~~~~~~--~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~--~~~~~w~~~~~~~~~i 159 (699)
|||++|+..+|++||+||++.|.++++.. .+..+||+|||||+|+||+|++|+|.||+.+ ..++.|.+.|++.|++
T Consensus 83 GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~~~w~~~g~~~~~i 162 (613)
T PRK05218 83 GMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSAFMVADKVTVITRSAGPAAEAVRWESDGEGEYTI 162 (613)
T ss_pred CCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchhhhhccCEEEEEEcCCCCCCceEEEEEeCCceeEE
Confidence 99999999999999999999999888532 3568999999999999999999999999844 5689999999999999
Q ss_pred EeCCCCCCCCCceEEEEEeccchhhcccHHHHHHHHHHhcCCCccceEeecccccccccCCCCCCCccccccCCccccch
Q 005370 160 TRDVSGEPLGRGTKMTLYLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEISDDEDDEPKKEEEGDVEDVDE 239 (699)
Q Consensus 160 ~~~~~~~~~~~GT~I~L~lk~~~~~~~~~~~l~~ii~~ys~fl~~pI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (699)
.+. ...++||+|+|+|+++..+|++.++|+++|++||.|+++||+++++
T Consensus 163 ~~~---~~~~~GT~I~l~Lk~~~~e~~e~~~i~~li~kys~~l~~PI~~~~~---------------------------- 211 (613)
T PRK05218 163 EEI---EKEERGTEITLHLKEDEDEFLDEWRIRSIIKKYSDFIPVPIKLEKE---------------------------- 211 (613)
T ss_pred eEC---CCCCCCcEEEEEECcchhhhcCHHHHHHHHHHHHhcCCCCEEEecc----------------------------
Confidence 885 2348999999999999999999999999999999999999999641
Q ss_pred HHHhhhcccccccccccceeeeccCCCCccCCCCCCCHHHHHHHHHHhhcCccCCceeeeeecccceeeEEEEEecCCCC
Q 005370 240 EKEKEGKKKKKIKEVSHEWQLINKQKPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAVLFVPKRAP 319 (699)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~iN~~~piW~~~~~~v~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p 319 (699)
+|+++|+.+|+|+++++++++++|..||+.+++++.+||+|+|++++|++.|+|+||||..+|
T Consensus 212 -----------------~~~~in~~~~~w~~~~~~i~~~~~~~fy~~~~~~~~~pl~~i~~~~e~~~~~~gll~iP~~~~ 274 (613)
T PRK05218 212 -----------------EEETINSASALWTRSKSEITDEEYKEFYKHLAHDFDDPLFWIHNNVEGPFEYTGLLYIPKKAP 274 (613)
T ss_pred -----------------cceeecCCccceecCCccccHHHHHHHhhhhcccccCCcEEEEcccCCceEEEEEEEeCCCCc
Confidence 268999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhhcccceEEEeeceeccccccccccccccceeeeecCCCCCCccchhhhcccHHHHHHHHHHHHHHHHHHHHHh
Q 005370 320 FDLFDTRKKMNNIKLYVRRVFIMDNCEELIPEYLGFIKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIA 399 (699)
Q Consensus 320 ~~~~~~~~~~~~i~LY~~rv~I~d~~~~llP~~l~Fv~GvVDS~dLplnvSRE~lq~~~~l~~i~~~l~~k~~~~L~~la 399 (699)
+++|+.. .+++++||||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.++|
T Consensus 275 ~~~~~~~-~~~~~~lyvn~v~I~d~~~~lLP~wl~Fv~GVVDs~dLplnvSRE~lq~~~~l~~i~~~l~~kv~~~l~~la 353 (613)
T PRK05218 275 FDLFNRD-RKGGLKLYVKRVFIMDDAEELLPEYLRFVKGVIDSEDLPLNVSREILQEDRVVKKIRKAITKKVLDELEKLA 353 (613)
T ss_pred cchhhhc-ccccEEEEECcEEeeCchhhhchHHHhheEEEeecCCCCCccCHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988632 578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h-CHHHHHHHHHHHhHHhhccccCChhhHHHHhchhcccccCCCCceecHHHHHHhhcCCCceEEEEeCCCHHHHhcChh
Q 005370 400 E-NKEDYNKFYDAFSKNLKLGIHEDSQNRAKLADLLRYHSTKSSEEFTSLKDYVTRMKEGQKDIYYITGESKKAVENSPF 478 (699)
Q Consensus 400 ~-d~e~y~~f~~~~~~~lK~G~~eD~~~~e~l~~lLrf~ss~~~~~~~sL~eY~~rm~~~Q~~IyY~~~~~~~~~~~sp~ 478 (699)
+ |+++|++||++||.+||+||++|.++++++++||||+||+ .++++||+||++||+++|+.|||++++|++++++|||
T Consensus 354 ~~d~~~y~~f~~~~~~~lK~g~~~D~~~~~~~~~lL~f~ts~-~~~~~sL~ey~~rm~~~q~~Iyy~~~~~~~~~~~sp~ 432 (613)
T PRK05218 354 KNDREKYEKFWKEFGPVLKEGLYEDFANREKLAKLLRFASTH-EGKYVSLAEYVERMKEGQKKIYYITGDSREAAKNSPH 432 (613)
T ss_pred hhCHHHHHHHHHHHHHHHHhhhhccHHHHHHHHhhceeeecC-CCCcccHHHHHHhCcCCCceEEEEeCCCHHHHHhChH
Confidence 7 9999999999999999999999999999999999999996 3569999999999999999999999999999999999
Q ss_pred hHHHHHcCCEEEEecCCchHHHHHHHhhccCceeEeccccCCCCCcchHHHHhhHHHhHHhHHHHHHHHHHHhCCcccEE
Q 005370 479 LERLKKKGYEVLYMVDAIDEYAVGQLKEYEGKKLVSATKEGLKLDDETEEEKKKKEEKKKSFENLCKTMKDILGDRVEKV 558 (699)
Q Consensus 479 lE~~~~kG~eVL~l~dpiDE~~l~~L~~~~~~~f~~V~~~~~~l~~~~~~~~~~~~~~~~e~~~L~~~~k~~L~~~V~~V 558 (699)
+|.|+++|+|||++++|+||+|+++|.+|+|++|++|+++++++.+.+++++...+..++++++|++|+++.|+++|++|
T Consensus 433 ~e~~~~~g~eVl~~~~~~De~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~v~~V 512 (613)
T PRK05218 433 LELFKKKGIEVLLLTDPIDEFWISYLEEFDGKPFKSVARGDLDLGKEDEEEKEEKEEAEEEFKPLLERLKEALGDKVKDV 512 (613)
T ss_pred HHHHHhcCceEEEeCCccHHHHHHHHHHhcCCceEEeeccccccccccchhhhhhhhhHHHHHHHHHHHHHHhcCcceEE
Confidence 99999999999999999999999999999999999999999877541111122223345579999999999999999999
Q ss_pred EEeecCCCCCEEEEeCCCCccHHHHHHHHHHhcccCccccccCCCceEEeCCCChHHHHHHHhhhccCCchhHHHHHHHH
Q 005370 559 VVSDRIVDSPCCLVTGEYGWSANMERIMKAQALRDNSMSSYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDLTMLL 638 (699)
Q Consensus 559 ~vs~rL~dsP~~lv~~e~g~s~~mer~mka~~~~~~~~~~~~~~k~~LeiNp~HplIk~L~~~~~~~~~~~~~~~~~~~L 638 (699)
++|+||+++|||++++++|++++|+|+|++|++ ..+.++++|||||+||||++|++.. +++.++.++++|
T Consensus 513 ~~s~rl~~~Pa~~v~~~~~~~~~mer~~~~~~~------~~~~~~~~LeiNp~hplI~~L~~~~----d~~~~~~~~~~L 582 (613)
T PRK05218 513 RLSHRLTDSPACLVADEGDMSTQMEKLLKAAGQ------EVPESKPILEINPNHPLVKKLADEA----DEAKFKDLAELL 582 (613)
T ss_pred EEeccCCCCCeEEEeCccchHHHHHHHHHhhhh------cccccceEEEEcCCCHHHHHHHhcc----ChHHHHHHHHHH
Confidence 999999999999999999999999999988742 1234789999999999999998743 233499999999
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHhcCC
Q 005370 639 FETALLTSGFSLDDPNTFGSRIHRMLKLGLS 669 (699)
Q Consensus 639 yd~AlL~~G~~l~d~~~f~~r~~~ll~~~l~ 669 (699)
|+||+|++|++++||+.|++|+++||..+++
T Consensus 583 yd~AlL~~G~~~~d~~~~~~r~~~ll~~~~~ 613 (613)
T PRK05218 583 YDQALLAEGGSLEDPAAFVKRLNELLLKLLA 613 (613)
T ss_pred HHHHHHhCCCCccCHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999987653
No 7
>PRK14083 HSP90 family protein; Provisional
Probab=100.00 E-value=1e-131 Score=1126.94 Aligned_cols=573 Identities=22% Similarity=0.326 Sum_probs=505.9
Q ss_pred ccchhhcHHHHHHHHHhcCCCCchHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEE-cCCCCEEEEEeCCCC
Q 005370 6 TFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIP-DKANKTLTIVDSGIG 84 (699)
Q Consensus 6 ~~~F~~d~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~-d~~~~~l~I~DnGiG 84 (699)
.++||+|+++||++|+++||||+.+|||||||||+|||+++++.. + ..+++|+|.+ +.++++|+|+|||+|
T Consensus 2 ~~~Fqae~~~ll~ll~~~LYs~~~iflrELiqNA~DA~~~~~~~~---~-----~~~~~I~I~~~d~~~~~l~I~DnGiG 73 (601)
T PRK14083 2 SHRFQVDLRGVIDLLSRHLYSSPRVYVRELLQNAVDAITARRALD---P-----TAPGRIRIELTDAGGGTLIVEDNGIG 73 (601)
T ss_pred CccchHhHHHHHHHHHHhhcCCcHHHHHHHHHhHHHHHHhhhccC---C-----CCCceEEEEEccCCCcEEEEEeCCCC
Confidence 479999999999999999999999999999999999999887642 1 2356788877 778899999999999
Q ss_pred CCHHHHHHHHhhhhccCchhHHHHHhcCCCCCccccccchhhheeeecCeEEEEEecC-CCceEEEEEccCceEEEEeCC
Q 005370 85 MTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHN-DDEQYIWESQAGGSFTVTRDV 163 (699)
Q Consensus 85 Mt~~el~~~l~~Ia~S~~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~-~~~~~~w~~~~~~~~~i~~~~ 163 (699)
||.+++.++|++||+||++.+. ++ ..+..+||+||||||||||||++|+|.|++. ++.++.|++.++|.|+|+..+
T Consensus 74 mt~eel~~~l~~ig~S~k~~~~--~~-~~~~~~IG~FGIGf~S~F~vad~v~V~Tr~~~~~~~~~W~~~~~g~y~i~~~~ 150 (601)
T PRK14083 74 LTEEEVHEFLATIGRSSKRDEN--LG-FARNDFLGQFGIGLLSCFLVADEIVVVSRSAKDGPAVEWRGKADGTYSVRKLE 150 (601)
T ss_pred CCHHHHHHHHhhhccchhhhhh--hc-ccccccccccccceEEEEEecCEEEEEeccCCCCceEEEEECCCCceEEEeCC
Confidence 9999999999999999998753 21 2346799999999999999999999999986 577999999999999998742
Q ss_pred CCCCCCCceEEEEEeccchhhcccHHHHHHHHHHhcCCCccceEeecccccccccCCCCCCCccccccCCccccchHHHh
Q 005370 164 SGEPLGRGTKMTLYLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEISDDEDDEPKKEEEGDVEDVDEEKEK 243 (699)
Q Consensus 164 ~~~~~~~GT~I~L~lk~~~~~~~~~~~l~~ii~~ys~fl~~pI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (699)
+....+||+|+|+++++..+|++.++|++++++||.|++|||+++++
T Consensus 151 -~~~~~~GT~I~L~l~~d~~~~~~~~~i~~li~~ys~~i~~pI~l~~~-------------------------------- 197 (601)
T PRK14083 151 -TERAEPGTTVYLRPRPDAEEWLERETVEELAKKYGSLLPVPIRVEGE-------------------------------- 197 (601)
T ss_pred -CCCCCCCCEEEEEecCchhhhccHHHHHHHHHHHhccCCCCcccCCc--------------------------------
Confidence 24568999999999999999999999999999999999999999641
Q ss_pred hhcccccccccccceeeeccCCCCccCCCCCCC--HHHHHHHHHHhhcCccCCceeeeeecccceeeEEEEE-ecCCCCC
Q 005370 244 EGKKKKKIKEVSHEWQLINKQKPIWLRKPEEIT--KEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAVLF-VPKRAPF 320 (699)
Q Consensus 244 ~~~~~~~~~~~~~~~~~iN~~~piW~~~~~~v~--~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~lly-iP~~~p~ 320 (699)
.++||+++|||+|+++++| ++||.+|||++++ ++||+|+|+++||+.. +|+|| ||+.+|+
T Consensus 198 --------------~~~iN~~~~lW~~~~~eit~~~eey~~Fyk~~~~--~~Pl~~ih~~~e~~~~-~~~Ly~iP~~~~~ 260 (601)
T PRK14083 198 --------------KGGVNETPPPWTRDYPDPETRREALLAYGEELLG--FTPLDVIPLDVPSGGL-EGVAYVLPYAVSP 260 (601)
T ss_pred --------------eeeecCCCCCccCCccccCccHHHHHHHHHHhcC--CCchheeeecccchhh-eEEEEecCCCCCc
Confidence 1689999999999999999 9999999999998 7999999999999875 78888 6999987
Q ss_pred CcchhhhcccceEEEeeceeccccccccccccccceeeeecCCCCCCccchhhhcccHHHHHHHHHHHHHHHHHHHHHhh
Q 005370 321 DLFDTRKKMNNIKLYVRRVFIMDNCEELIPEYLGFIKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAE 400 (699)
Q Consensus 321 ~~~~~~~~~~~i~LY~~rv~I~d~~~~llP~~l~Fv~GvVDS~dLplnvSRE~lq~~~~l~~i~~~l~~k~~~~L~~la~ 400 (699)
+. +++|+||||||||+|+|++|||+||+||||||||+|||||||||+||+|+++++||+.|++||+++|.++|+
T Consensus 261 ~~------~~~v~LY~~rVfI~d~~~~lLP~wl~FvrGVVDS~DLpLNvSRE~LQ~~~~l~~ir~~i~kki~~~L~~la~ 334 (601)
T PRK14083 261 AA------RRKHRVYLKRMLLSEEAENLLPDWAFFVRCVVNTDELRPTASREALYEDDALAAVREELGEAIRKWLIGLAT 334 (601)
T ss_pred cc------cCceEEEeeeeEeecchhhhhHHHHHHheeeeecCCCCCccCHHHHccCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 52 679999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred -CHHHHHHHHHHHhHHhhccccCChhhHHHHhchhcccccCCCCceecHHHHHHhhcCCCceEEEEeCC-CHHHHhcChh
Q 005370 401 -NKEDYNKFYDAFSKNLKLGIHEDSQNRAKLADLLRYHSTKSSEEFTSLKDYVTRMKEGQKDIYYITGE-SKKAVENSPF 478 (699)
Q Consensus 401 -d~e~y~~f~~~~~~~lK~G~~eD~~~~e~l~~lLrf~ss~~~~~~~sL~eY~~rm~~~Q~~IyY~~~~-~~~~~~~sp~ 478 (699)
||++|++||++||.+||+||++|.+++++|++||||+||.+ .+||+||++|| +.|||++++ ++++++
T Consensus 335 ~d~e~y~~f~~~~g~~lK~g~~~D~~~~~~l~~lL~f~ss~~---~~sL~eY~~r~----~~IyY~~~~~~~~~~~---- 403 (601)
T PRK14083 335 TDPERLRRLLAVHHLGVKALASHDDELLRLILPWLPFETTDG---RMTLAEIRRRH----GVIRYTSSVDEFRQLA---- 403 (601)
T ss_pred hCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhceeecCCC---CcCHHHHHHhC----CeEEEEcCHHHHHHHH----
Confidence 99999999999999999999999999999999999999985 69999999995 589999996 777765
Q ss_pred hHHHHHcCCEEEEecCCchHHHHHHHhh-ccCceeEeccccCCC--CCcchHHHHhhHHHhHHhHHHHHHHHHHHhCCcc
Q 005370 479 LERLKKKGYEVLYMVDAIDEYAVGQLKE-YEGKKLVSATKEGLK--LDDETEEEKKKKEEKKKSFENLCKTMKDILGDRV 555 (699)
Q Consensus 479 lE~~~~kG~eVL~l~dpiDE~~l~~L~~-~~~~~f~~V~~~~~~--l~~~~~~~~~~~~~~~~e~~~L~~~~k~~L~~~V 555 (699)
+.|+++|+|||+|++||||+++++|.+ |+|++|++|+++++. ++. .+ ...++++++|++|++++|++++
T Consensus 404 -~~~~~kg~eVl~~~~~iDe~~l~~l~~~~~~~~~~~v~~~~~~~~~~~-~~------~~~~~~~~~l~~~~~~~L~~~~ 475 (601)
T PRK14083 404 -PIARAQGMGVINGGYTYDSELLERLPRLRPGLTVERLDPAELTDRLEP-LT------PEEELALRPFLAEAREVLAPFG 475 (601)
T ss_pred -HHHHHCCCeEEEeCCccHHHHHHHHHhhCCCCcEEEechhhhhhhccc-cc------hhhHHHHHHHHHHHHHHhCccc
Confidence 799999999999999999999999998 999999999998763 432 11 1234579999999999999986
Q ss_pred cEE-EEeecCCCCCEEEEeCCCCccHHHHHHHHHHh-cccCccc--------cccCCCceEEeCCCChHHHHHHHhhhcc
Q 005370 556 EKV-VVSDRIVDSPCCLVTGEYGWSANMERIMKAQA-LRDNSMS--------SYMSSKKTMEINPDNGIMEELRKRAEAD 625 (699)
Q Consensus 556 ~~V-~vs~rL~dsP~~lv~~e~g~s~~mer~mka~~-~~~~~~~--------~~~~~k~~LeiNp~HplIk~L~~~~~~~ 625 (699)
.+| ++|.||+++|||++++++ .+|+++|+++. ++++.|+ .....+++|||||+||||++|+++
T Consensus 476 ~~v~~~s~rl~~~Pa~~v~~e~---~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~LeiN~~hpli~~l~~~---- 548 (601)
T PRK14083 476 CDVVIRHFEPADLPALYLHDRA---AQHSREREEAVEEADDLWADILGSLDESQPAPRARLVLNLRNPLVRRLATL---- 548 (601)
T ss_pred eEEEEEcCCCCCCCEEEEeCch---hHHHHHHHhhhhhcccchhhhhhhhhhcccccCeEEEECCCCHHHHHHHhc----
Confidence 666 667899999999999884 46777775432 1221111 233478999999999999999875
Q ss_pred CCchhHHHHHHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHHhcCCCC
Q 005370 626 KNDKSVKDLTMLLFETALLTSGFSLD--DPNTFGSRIHRMLKLGLSID 671 (699)
Q Consensus 626 ~~~~~~~~~~~~Lyd~AlL~~G~~l~--d~~~f~~r~~~ll~~~l~~~ 671 (699)
.+++.+++++++||+||+|++|++++ +|+.|+.++++||..+|+-+
T Consensus 549 ~d~~~~~~~~~~Lyd~AlL~~g~~l~~~e~~~~~~~~~~l~~~~l~~~ 596 (601)
T PRK14083 549 GDPKLLSRAVEALYVQALLLGHRPLRPAEMALLNRSLLGLLELALDAD 596 (601)
T ss_pred cChHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 24567999999999999999999999 99999999999999888654
No 8
>PF00183 HSP90: Hsp90 protein; InterPro: IPR001404 Molecular chaperones, or heat shock proteins (Hsps) are ubiquitous proteins that act to maintain proper protein folding within the cell []. They assist in the folding of nascent polypeptide chains, and are also involved in the re-folding of denatured proteins following proteotoxic stress. As their name implies, the heat shock proteins were first identified as proteins that were up-regulated under conditions of elevated temperature. However, subsequent studies have shown that increased Hsp expression is induced by a variety of cellular stresses, including oxidative stress and inflammation. Five major Hsp families have been determined, and are categorized according to their molecular size (Hsp100, Hsp90, Hsp70, Hsp60, and the small Hsps). Hsps are involved in a variety of cellular processes that are ATP-dependent. These include: prevention of protein aggregation, protein degradation, protein trafficking, and maintenance of signalling proteins in a conformation that permits activation. Hsp90 chaperones are unique in their ability to regulate a specific subset of cellular signalling proteins that have been implicated in disease processes, including intracellular protein kinases, steroid hormone receptors, and growth factor receptors [].; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding, 0006950 response to stress; PDB: 3K99_D 2H55_A 3RLP_A 1OSF_A 3R4M_A 1YES_A 1UY9_A 3FT8_A 2YE2_A 2QF6_A ....
Probab=100.00 E-value=9.7e-130 Score=1099.71 Aligned_cols=494 Identities=58% Similarity=0.965 Sum_probs=419.4
Q ss_pred hcccHHHHHHHHHHhcCCCccceEeecccccccccCCCCCCCcc----cc-----ccCCccccchHH--Hhhhccccccc
Q 005370 184 EYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEISDDEDDEPK----KE-----EEGDVEDVDEEK--EKEGKKKKKIK 252 (699)
Q Consensus 184 ~~~~~~~l~~ii~~ys~fl~~pI~~~~~~~~~~~~~~~~~~~~~----~~-----~~~~~~~~~~~~--~~~~~~~~~~~ 252 (699)
+|+++++|+++|++||+|++|||+++..+++++++++++++.++ +. +.+..++.+.++ +++++++++++
T Consensus 1 eyl~~~klk~lvkkyS~Fi~~PI~l~~~k~~~~ev~~ee~~~~~~~~~~~~~~~~~~~~~e~~~~eee~~~~~~k~k~~~ 80 (531)
T PF00183_consen 1 EYLEEYKLKELVKKYSQFISFPIYLWVEKEEEKEVPDEEEEEEEEEKEEEEKKEEEEEKVEEEDEEEEKEEKKPKTKKVK 80 (531)
T ss_dssp GGGSHHHHHHHHHHHHTTSSSEEEEEEEEEEECCCEHHHHHH---HTT-TT--------SSEEEE----S-TTEEEEECC
T ss_pred CcccHHHHHHHHHhhccccccceeEeeeccccccCCcchhhhhhhhhhhccccccccccccccccccccccccccccccc
Confidence 59999999999999999999999999877666665544322110 00 111222222222 12345677788
Q ss_pred ccccceeeeccCCCCccCCCCCCCHHHHHHHHHHhhcCccCCceeeeeecccceeeEEEEEecCCCCCCcchhhhcccce
Q 005370 253 EVSHEWQLINKQKPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTRKKMNNI 332 (699)
Q Consensus 253 ~~~~~~~~iN~~~piW~~~~~~v~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p~~~~~~~~~~~~i 332 (699)
++.++|++||+++|||+|+|++||++||.+|||+++++|++||+|+||++||+++|+||||||+++|+++|.....++||
T Consensus 81 ~~~~~~~~vN~~~piW~r~~~eit~eey~~Fyk~l~~~~~~Pl~~iH~~~eg~~~~~~lLyiP~~~p~~~~~~~~~~~~i 160 (531)
T PF00183_consen 81 ETVWEWEQVNTQKPIWTRDPKEITDEEYKEFYKSLSKDYDDPLFWIHFNAEGPFEFKSLLYIPKRAPFDLFENDKKKNGI 160 (531)
T ss_dssp EEEEEEEECS--S-GGGSSGGGS-HHHHHHHHHHHHTTSS-ESEEEEEEEESSSEEEEEEEEESS-SCCCCSSSTT--SE
T ss_pred cceeecccccccCcccccchhccchHHHHHHHHHhhhcccCchhheeccccccceeeEEEEeCCCCchhhhhhhhccccc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999998765557899
Q ss_pred EEEeeceeccccccccccccccceeeeecCCCCCCccchhhhcccHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 005370 333 KLYVRRVFIMDNCEELIPEYLGFIKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYNKFYDAF 412 (699)
Q Consensus 333 ~LY~~rv~I~d~~~~llP~~l~Fv~GvVDS~dLplnvSRE~lq~~~~l~~i~~~l~~k~~~~L~~la~d~e~y~~f~~~~ 412 (699)
+||||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.+||+|+++|++||++|
T Consensus 161 kLY~rrVfI~d~~~~llP~~L~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~~~l~kkvl~~l~~l~~d~e~y~~f~~~~ 240 (531)
T PF00183_consen 161 KLYVRRVFITDNFEELLPEYLRFVKGVVDSDDLPLNVSRETLQQNKLLKKIRKKLVKKVLDMLKKLAKDREKYEKFWKEF 240 (531)
T ss_dssp EEEETTEEEESSCGGSS-GGGTT-EEEEEESSS-SSCTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred eeeeecccccchhhcccchhhheeeeeeeccccCCccchhhhhccHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhccccCChhhHHHHhchhcccccCCCCceecHHHHHHhhcCCCceEEEEeCCCHHHHhcChhhHHHHHcCCEEEEe
Q 005370 413 SKNLKLGIHEDSQNRAKLADLLRYHSTKSSEEFTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLYM 492 (699)
Q Consensus 413 ~~~lK~G~~eD~~~~e~l~~lLrf~ss~~~~~~~sL~eY~~rm~~~Q~~IyY~~~~~~~~~~~sp~lE~~~~kG~eVL~l 492 (699)
|.+||+||++|..||++|++||||+||.++++++||++|++||+++|+.|||++|++++++.+|||+|+|+++|||||||
T Consensus 241 g~~iK~G~~eD~~n~~kl~~LLrf~ss~~~~~~~SL~eYv~rmke~Qk~IYY~~g~s~~~~~~SP~lE~~k~kG~EVL~l 320 (531)
T PF00183_consen 241 GKFIKEGVIEDFKNREKLAKLLRFESSKSEGKLTSLDEYVERMKEGQKQIYYLTGESREEAEQSPYLEAFKKKGYEVLFL 320 (531)
T ss_dssp HHHHHHHHHH-GGGHHHHHTT-EEEETTTTTSEEEHHHHHHTS-TT-SEEEEEESSSHHHHHTSGGGHHHHHCT--EEEE
T ss_pred hHHHHhHHhhhhhhhhhcccceeeeccccccccccHHHhhhccccccccceEEecchHHHHhhccchhhHHhhCceEEEe
Confidence 99999999999999999999999999988788999999999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHhhccCceeEeccccCCCCCcchHHHHhhHHHhHHhHHHHHHHHHHHhCCcccEEEEeecCCCCCEEEE
Q 005370 493 VDAIDEYAVGQLKEYEGKKLVSATKEGLKLDDETEEEKKKKEEKKKSFENLCKTMKDILGDRVEKVVVSDRIVDSPCCLV 572 (699)
Q Consensus 493 ~dpiDE~~l~~L~~~~~~~f~~V~~~~~~l~~~~~~~~~~~~~~~~e~~~L~~~~k~~L~~~V~~V~vs~rL~dsP~~lv 572 (699)
+||||++|+++|++|+|++|++|++++++|++ .++++...+..++++++|++|+++.|+++|.+|++|.||+++||||+
T Consensus 321 ~dpIDe~~i~~L~e~~gkkf~~I~ke~l~l~~-~e~ek~~~e~~~~~~~~L~~~~k~~L~~kV~~V~vS~RL~~sPa~lv 399 (531)
T PF00183_consen 321 TDPIDEFVIQQLEEYEGKKFQSIDKEDLDLEE-DEEEKKEDEELKEEFKPLTEWLKELLGDKVEKVKVSNRLVDSPAVLV 399 (531)
T ss_dssp -SHHHHHHHHHHSEETTEEEEETTBSSSSSST-SHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSEEEE-SSSSSSSEEEE
T ss_pred CCchHHHHHHHHhhcccccccccccccccccc-chhhhhhhhhhhhHHHHHHHHHHhhhhhhhheecccccccCCcceee
Confidence 99999999999999999999999999999876 45555555667788999999999999999999999999999999999
Q ss_pred eCCCCccHHHHHHHHHHhcccCccccccCCCceEEeCCCChHHHHHHHhhhccCCchhHHHHHHHHHHHHHHhCCCCCCC
Q 005370 573 TGEYGWSANMERIMKAQALRDNSMSSYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDLTMLLFETALLTSGFSLDD 652 (699)
Q Consensus 573 ~~e~g~s~~mer~mka~~~~~~~~~~~~~~k~~LeiNp~HplIk~L~~~~~~~~~~~~~~~~~~~Lyd~AlL~~G~~l~d 652 (699)
++++|+|++|+|||+||+.+++.+..++.+++||||||+||||++|+++...+++++.++++|+||||+|+|++|++++|
T Consensus 400 ~~e~g~s~~Merimkaqa~~~~~~~~~~~~kkiLEINp~HPLIk~L~~~~~~d~~d~~~~~la~~LyD~AlL~~G~~l~d 479 (531)
T PF00183_consen 400 SSEYGWSANMERIMKAQAMADMSMQEYMPSKKILEINPNHPLIKKLLKLVEKDEDDELAKDLAEQLYDTALLASGFELED 479 (531)
T ss_dssp E-SSSB-HHHHHHHHHHHCCSTTTSSTSC--EEEEE-TTSHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHTTSS-SS
T ss_pred cccchhHHHHHHHhhhhccccccccccccccceeecCCCCHHHHHHHhhhcccchhhHHHHHHHHHhhhhhhhcCCCccc
Confidence 99999999999999999877665556777899999999999999999998877777889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcccccCC
Q 005370 653 PNTFGSRIHRMLKLGLSIDEEENADE 678 (699)
Q Consensus 653 ~~~f~~r~~~ll~~~l~~~~~~~~~~ 678 (699)
|+.|++|+|+||.++|+++.+....+
T Consensus 480 p~~F~~Ri~~lL~~~l~~~~~~~~~~ 505 (531)
T PF00183_consen 480 PAAFAKRINKLLEKSLGVDPDAEVEE 505 (531)
T ss_dssp HHHHHHHHHHHHHHTTC--STTTTTT
T ss_pred HHHHHHHHHHHHHHhcCCCcCCcccc
Confidence 99999999999999999987754443
No 9
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.67 E-value=1.2e-16 Score=151.43 Aligned_cols=102 Identities=38% Similarity=0.495 Sum_probs=76.7
Q ss_pred CCCchHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEc-CCCCEEEEEeCCCCCCHHHHHHHHhhhhccCch
Q 005370 25 YSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPD-KANKTLTIVDSGIGMTKADLVNNLGTIARSGTK 103 (699)
Q Consensus 25 Ys~~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d-~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~ 103 (699)
|+. +.+|+|||+||+||++.. +.|.|..+ .+...|+|.|||.||+.++|.. ++++|.|++.
T Consensus 1 y~~-~~al~ElI~Ns~DA~a~~----------------I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~-~~~~g~s~k~ 62 (137)
T PF13589_consen 1 YSP-EDALRELIDNSIDAGATN----------------IKISIDEDKKGERYIVIEDNGEGMSREDLES-FFRIGRSSKK 62 (137)
T ss_dssp -SC-THHHHHHHHHHHHHHHHH----------------EEEEEEEETTTTTEEEEEESSS---HHHHHH-HTTCHHTHHH
T ss_pred CcH-HHHHHHHHHHHHHccCCE----------------EEEEEEcCCCCCcEEEEEECCcCCCHHHHHH-hccccCCCCC
Confidence 666 889999999999999852 45666554 3558999999999999999997 7789988764
Q ss_pred hHHHHHhcCCCCCccccccch-hhheeeecCeEEEEEecCC-CceEEEEE
Q 005370 104 EFMEALQAGADVSMIGQFGVG-FYSAYLVAERVVVTTKHND-DEQYIWES 151 (699)
Q Consensus 104 ~f~~~~~~~~~~~~iG~FGIG-f~S~F~vad~v~V~T~~~~-~~~~~w~~ 151 (699)
.. .....+|+||+| ++|+|+++++++|+|+..+ ...+.|..
T Consensus 63 ~~-------~~~~~~G~~G~G~k~A~~~~~~~~~v~S~~~~~~~~~~~~~ 105 (137)
T PF13589_consen 63 SE-------KDRQSIGRFGIGLKLAIFSLGDRVEVISKTNGESFTYTIDY 105 (137)
T ss_dssp HH-------HHGGGGGGGTSGCGGGGGGTEEEEEEEEESTTSSSEEEEEE
T ss_pred ch-------hhhhcCCCcceEHHHHHHHhcCEEEEEEEECCCCcEEEEEE
Confidence 21 124579999999 8899999999999999753 34554443
No 10
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.45 E-value=7.4e-13 Score=142.37 Aligned_cols=168 Identities=23% Similarity=0.271 Sum_probs=110.4
Q ss_pred HHHHHH-hcCCCCchHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCC-EEEEEeCCCCCCHHHHHHH
Q 005370 16 LLSLII-NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANK-TLTIVDSGIGMTKADLVNN 93 (699)
Q Consensus 16 ll~ll~-~~LYs~~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~-~l~I~DnGiGMt~~el~~~ 93 (699)
+...|. .....++..+|+|||+||.||.+. .|.|.+..++. .|+|.|||.||+.+++...
T Consensus 10 ~~~~i~s~~~i~~~~~~l~eLi~Na~dA~a~------------------~I~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~ 71 (312)
T TIGR00585 10 LVNKIAAGEVIERPASVVKELVENSLDAGAT------------------RIDVEIEEGGLKLIEVSDNGSGIDKEDLPLA 71 (312)
T ss_pred HHHHHhCcCchhhHHHHHHHHHHHHHHCCCC------------------EEEEEEEeCCEEEEEEEecCCCCCHHHHHHH
Confidence 344444 566788999999999999999752 34444433333 5999999999999999865
Q ss_pred HhhhhccCchhHHHHHhcCCCCCccccccchhhheeeecCeEEEEEec--CCCceEEEEEccCceEEEEeCCCCCCCCCc
Q 005370 94 LGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKH--NDDEQYIWESQAGGSFTVTRDVSGEPLGRG 171 (699)
Q Consensus 94 l~~Ia~S~~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~--~~~~~~~w~~~~~~~~~i~~~~~~~~~~~G 171 (699)
+.....|....+. .+ ......|.+|.|++|...+| +++|.|+. .++.++.|...|+ .+... ......+|
T Consensus 72 ~~~~~tsk~~~~~-~~---~~~~~~G~rG~al~si~~~s-~~~i~S~~~~~~~~~~~~~~~g~---~~~~~-~~~~~~~G 142 (312)
T TIGR00585 72 CERHATSKIQSFE-DL---ERIETLGFRGEALASISSVS-RLTITTKTSAADGLAWQALLEGG---MIEEI-KPAPRPVG 142 (312)
T ss_pred hhCCCcCCCCChh-Hh---hcccccCccchHHHHHHhhC-cEEEEEeecCCCcceEEEEECCC---cCccc-ccccCCCc
Confidence 5444333222211 11 22456899999999999998 89999996 3456778874432 22221 12345899
Q ss_pred eEEEEE-ec---cchhhccc-----HHHHHHHHHHhc---CCCccceEeec
Q 005370 172 TKMTLY-LK---EDQLEYLE-----ERRIKDLVKKHS---EFISYPIYLWT 210 (699)
Q Consensus 172 T~I~L~-lk---~~~~~~~~-----~~~l~~ii~~ys---~fl~~pI~~~~ 210 (699)
|+|++. |- +..+.++. ...++.++.+|+ ..+.|.++.++
T Consensus 143 TtV~v~~lf~n~p~r~~~~~~~~~~~~~i~~~l~~~al~~p~i~f~l~~~~ 193 (312)
T TIGR00585 143 TTVEVRDLFYNLPVRRKFLKSPKKEFRKILDLLNRYALIHPDVSFSLTHDG 193 (312)
T ss_pred cEEEEchhhccCchhhhhccCcHHHHHHHHHHHHHHhhcCCCeEEEEEECC
Confidence 999997 11 12222322 457999999999 45556666643
No 11
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=99.34 E-value=5.6e-11 Score=138.67 Aligned_cols=161 Identities=24% Similarity=0.301 Sum_probs=107.5
Q ss_pred HHHHHH-hcCCCCchHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCC-CEEEEEeCCCCCCHHHHHHH
Q 005370 16 LLSLII-NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKAN-KTLTIVDSGIGMTKADLVNN 93 (699)
Q Consensus 16 ll~ll~-~~LYs~~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~-~~l~I~DnGiGMt~~el~~~ 93 (699)
+...|+ .....++..+|+|||+||+||++. .|.|.+..++ ..|+|.|||.||+.+++...
T Consensus 10 v~~~IaAgevI~~~~svvkElveNsiDAgat------------------~I~v~i~~~g~~~i~V~DnG~Gi~~~~~~~~ 71 (617)
T PRK00095 10 LANQIAAGEVVERPASVVKELVENALDAGAT------------------RIDIEIEEGGLKLIRVRDNGCGISKEDLALA 71 (617)
T ss_pred HHHHhcCcCcccCHHHHHHHHHHHHHhCCCC------------------EEEEEEEeCCeEEEEEEEcCCCCCHHHHHHH
Confidence 344444 666788999999999999999862 4555553333 57999999999999999977
Q ss_pred HhhhhccCchhHHHHHhcCCCCCccccccchhhheeeecCeEEEEEecCC-CceEEEEEccCceEEEEeCCCCCCCCCce
Q 005370 94 LGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHND-DEQYIWESQAGGSFTVTRDVSGEPLGRGT 172 (699)
Q Consensus 94 l~~Ia~S~~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~-~~~~~w~~~~~~~~~i~~~~~~~~~~~GT 172 (699)
+...+.|.-..+ +.+ ......|..|.|+.|.-.|+ +++|.|+..+ ..++.+...++....+.+ ....+||
T Consensus 72 ~~~~~tsKi~~~-~dl---~~~~t~GfrGeAL~sI~~vs-~l~i~s~~~~~~~~~~~~~~~G~~~~~~~----~~~~~GT 142 (617)
T PRK00095 72 LARHATSKIASL-DDL---EAIRTLGFRGEALPSIASVS-RLTLTSRTADAAEGWQIVYEGGEIVEVKP----AAHPVGT 142 (617)
T ss_pred hhccCCCCCCCh-hHh---hccccCCcchhHHHhhhhce-EEEEEEecCCCCceEEEEecCCcCcceec----ccCCCCC
Confidence 765555432211 111 12345799999998888886 8999999753 456666655432212222 2347999
Q ss_pred EEEEE-e---ccchhhcc-----cHHHHHHHHHHhcCCCc
Q 005370 173 KMTLY-L---KEDQLEYL-----EERRIKDLVKKHSEFIS 203 (699)
Q Consensus 173 ~I~L~-l---k~~~~~~~-----~~~~l~~ii~~ys~fl~ 203 (699)
+|++. | -+..+.|+ +...|.+++++|+-.-|
T Consensus 143 ~V~v~~LF~n~P~Rrkflk~~~~e~~~i~~~v~~~Al~~p 182 (617)
T PRK00095 143 TIEVRDLFFNTPARRKFLKSEKTELGHIDDVVNRLALAHP 182 (617)
T ss_pred EEEechhhccCcHHHHhccCcHHHHHHHHHHHHHHhhcCC
Confidence 99996 1 12333343 23468888998886654
No 12
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=99.31 E-value=9.1e-12 Score=134.69 Aligned_cols=139 Identities=22% Similarity=0.333 Sum_probs=97.2
Q ss_pred CCCc----hHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEE-cCCCCEEEEEeCCCCCCHHHHHHHHhhhhc
Q 005370 25 YSNK----EIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIP-DKANKTLTIVDSGIGMTKADLVNNLGTIAR 99 (699)
Q Consensus 25 Ys~~----~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~-d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~ 99 (699)
|++| ...+||||.||.|||+..+.+ +.+.|+|.- +.+-.+++|+|||+|++.+.+.+.||+...
T Consensus 30 f~~p~RsL~~tv~ElV~NSLDA~eeaGIL-----------PdI~v~I~~~~~d~y~v~veDNGpGIP~e~IPkvFGk~Ly 98 (538)
T COG1389 30 FDGPIRSLTTTVHELVTNSLDACEEAGIL-----------PDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLY 98 (538)
T ss_pred CCCchhHHHHHHHHHHhcchhhHHhcCCC-----------CceEEEEEecCCceEEEEEecCCCCCChhHhHHHHHHHhc
Confidence 6665 368999999999999975543 456666664 345567999999999999999999999988
Q ss_pred cCchhHHHHHhcCCCCCccccccchhhheeee-----cCeEEEEEecCC-CceEEEEEccC---ceEEE-EeC-CCCCCC
Q 005370 100 SGTKEFMEALQAGADVSMIGQFGVGFYSAYLV-----AERVVVTTKHND-DEQYIWESQAG---GSFTV-TRD-VSGEPL 168 (699)
Q Consensus 100 S~~~~f~~~~~~~~~~~~iG~FGIGf~S~F~v-----ad~v~V~T~~~~-~~~~~w~~~~~---~~~~i-~~~-~~~~~~ 168 (699)
|++-+ . ..+..||+|||.-+|.+. +..|.|.|+..+ ..++.+...-+ .+-.| +.. -.....
T Consensus 99 gSKfh--~------~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp~Iv~r~~~~~~~~ 170 (538)
T COG1389 99 GSKFH--R------NIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEPEIVERGEVENPGG 170 (538)
T ss_pred cchhh--h------hhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCcchhhhcccccCCCC
Confidence 87532 1 234569999999776654 578999998764 45554433211 11111 110 111335
Q ss_pred CCceEEEEEeccch
Q 005370 169 GRGTKMTLYLKEDQ 182 (699)
Q Consensus 169 ~~GT~I~L~lk~~~ 182 (699)
+|||+|+|+++..+
T Consensus 171 ~hGT~Vel~~~~~~ 184 (538)
T COG1389 171 WHGTRVELELKGVW 184 (538)
T ss_pred CCceEEEEEecccc
Confidence 79999999999763
No 13
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=99.21 E-value=4.6e-11 Score=139.15 Aligned_cols=160 Identities=24% Similarity=0.247 Sum_probs=112.0
Q ss_pred HHHHHH-hcCCCCchHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCE-EEEEeCCCCCCHHHHHHH
Q 005370 16 LLSLII-NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKT-LTIVDSGIGMTKADLVNN 93 (699)
Q Consensus 16 ll~ll~-~~LYs~~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~-l~I~DnGiGMt~~el~~~ 93 (699)
+.+.|+ -.....|..+|||||.||.||++. +|+|.++.++.. |.|+|||+||+++||.-.
T Consensus 11 l~nqIAAGEVIerPaSVVKELVENSlDAGAt------------------~I~I~ve~gG~~~I~V~DNG~Gi~~~Dl~la 72 (638)
T COG0323 11 LVNQIAAGEVIERPASVVKELVENSLDAGAT------------------RIDIEVEGGGLKLIRVRDNGSGIDKEDLPLA 72 (638)
T ss_pred HHHHhcccceeecHHHHHHHHHhcccccCCC------------------EEEEEEccCCccEEEEEECCCCCCHHHHHHH
Confidence 344444 456668899999999999999973 788888777655 999999999999999999
Q ss_pred HhhhhccCchhHHHHHhcCCCCCccccccchhhheeeecCeEEEEEecC-CCceEEEEEccCceE-EEEeCCCCCCCCCc
Q 005370 94 LGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHN-DDEQYIWESQAGGSF-TVTRDVSGEPLGRG 171 (699)
Q Consensus 94 l~~Ia~S~~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~-~~~~~~w~~~~~~~~-~i~~~~~~~~~~~G 171 (699)
+...|+|.=..+-+ + -.....|..|=.+.|.-.| .+++|+||.. +..++.|...|++.- ++.+ ...+.|
T Consensus 73 ~~rHaTSKI~~~~D-L---~~I~TlGFRGEAL~SIasV-srlti~Srt~~~~~~~~~~~~g~~~~~~~~p----~a~~~G 143 (638)
T COG0323 73 LLRHATSKIASLED-L---FRIRTLGFRGEALASIASV-SRLTITSRTAEASEGTQIYAEGGGMEVTVKP----AAHPVG 143 (638)
T ss_pred HhhhccccCCchhH-H---HHhhccCccHHHHHHHHhh-heeEEEeecCCcCceEEEEecCCcccccccC----CCCCCC
Confidence 99998885332211 1 0123467777777777777 5699999964 456777777765432 3333 234669
Q ss_pred eEEEEE-e--c-cchh-----hcccHHHHHHHHHHhcCCC
Q 005370 172 TKMTLY-L--K-EDQL-----EYLEERRIKDLVKKHSEFI 202 (699)
Q Consensus 172 T~I~L~-l--k-~~~~-----~~~~~~~l~~ii~~ys~fl 202 (699)
|+|++. | + +..+ +..+...+..+|++|+-.-
T Consensus 144 TtVeV~dLF~NtPaRrKflks~~~E~~~i~~vv~r~ALah 183 (638)
T COG0323 144 TTVEVRDLFYNTPARRKFLKSEKTEFGHITELINRYALAH 183 (638)
T ss_pred CEEEehHhhccChHHHHhhcccHHHHHHHHHHHHHHHhcC
Confidence 999987 2 1 2222 2234456999999998655
No 14
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.14 E-value=3.4e-10 Score=128.36 Aligned_cols=157 Identities=23% Similarity=0.322 Sum_probs=101.6
Q ss_pred CCCc----hHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEc---CCCCEEEEEeCCCCCCHHHHHHHHhhh
Q 005370 25 YSNK----EIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPD---KANKTLTIVDSGIGMTKADLVNNLGTI 97 (699)
Q Consensus 25 Ys~~----~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d---~~~~~l~I~DnGiGMt~~el~~~l~~I 97 (699)
|+++ ..+|+|||+||+||++.... .+.+.|.+... .+...|+|+|||+||+.+++...|+..
T Consensus 30 f~~p~~~L~qVLkNLIeNAIDa~~~~gi-----------lp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f 98 (535)
T PRK04184 30 FDNPARALYTTVKELVDNSLDACEEAGI-----------LPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKL 98 (535)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHhhhcCC-----------CceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhh
Confidence 5555 56899999999999974211 12345555432 223569999999999999999888765
Q ss_pred hccCchhHHHHHhcCCCCCccccccchhhheeeecC-----eEEEEEecCCCc-eEEEEEc-----cCceEEEEeCCCCC
Q 005370 98 ARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAE-----RVVVTTKHNDDE-QYIWESQ-----AGGSFTVTRDVSGE 166 (699)
Q Consensus 98 a~S~~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad-----~v~V~T~~~~~~-~~~w~~~-----~~~~~~i~~~~~~~ 166 (699)
..+++ |. ......|++|+|+.++.+++. .+.|.|+.+++. ++.+... ..+. .+.......
T Consensus 99 ~~~SK--~~------~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~id~~kn~g~-i~~~~~~~~ 169 (535)
T PRK04184 99 LYGSK--FH------NLRQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELKIDTKKNEPI-ILEREEVDW 169 (535)
T ss_pred hcccc--cc------ccccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEecccccCCe-eccccccCC
Confidence 44332 10 112456999999999987754 589999875444 5554432 1121 111111112
Q ss_pred CCCCceEEEEEeccchhhcccHHHHHHHHHHhcCCCc
Q 005370 167 PLGRGTKMTLYLKEDQLEYLEERRIKDLVKKHSEFIS 203 (699)
Q Consensus 167 ~~~~GT~I~L~lk~~~~~~~~~~~l~~ii~~ys~fl~ 203 (699)
...+||+|.+.+..... ....++.++|++++-.-|
T Consensus 170 ~~~~GT~V~V~l~~~~~--~~~~~I~e~i~r~Al~nP 204 (535)
T PRK04184 170 DRWHGTRVELEIEGDWY--RAKQRIYEYLKRTAIVNP 204 (535)
T ss_pred CCCCCEEEEEEECCcCh--hhHHHHHHHHHHHHHhCC
Confidence 45799999999876532 226789999998887664
No 15
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=98.99 E-value=3.1e-09 Score=119.40 Aligned_cols=153 Identities=20% Similarity=0.288 Sum_probs=96.3
Q ss_pred HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCC-CCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHH
Q 005370 30 IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKA-NKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEA 108 (699)
Q Consensus 30 i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~ 108 (699)
.+++|||.||+||++.... .+.+.|.+..... ...|+|.|||.||+.+++...|....++++..
T Consensus 31 ~VlkELVeNAIDA~~~~g~-----------~p~I~V~i~~~g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~---- 95 (488)
T TIGR01052 31 TVIHELVTNSLDACEEAGI-----------LPDIKVEIEKIGKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFH---- 95 (488)
T ss_pred HHHHHHHHHHHHHhhccCC-----------CceEEEEEEECCCceEEEEEEECCCCCCHHHHHhhhhhccccCccc----
Confidence 5889999999999873110 1223444433222 23799999999999999998887754443310
Q ss_pred HhcCCCCCccccccchhhheeeecC-----eEEEEEecCCC-ceEEEEEc-----cCceEEEEeCCCCCCCCCceEEEEE
Q 005370 109 LQAGADVSMIGQFGVGFYSAYLVAE-----RVVVTTKHNDD-EQYIWESQ-----AGGSFTVTRDVSGEPLGRGTKMTLY 177 (699)
Q Consensus 109 ~~~~~~~~~iG~FGIGf~S~F~vad-----~v~V~T~~~~~-~~~~w~~~-----~~~~~~i~~~~~~~~~~~GT~I~L~ 177 (699)
......|.+|+|+.++.+++. .++|.|+..+. .++.++.. ..|. .+.....+...++||+|++.
T Consensus 96 ----~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~~~~~~~~~id~~~n~G~-i~~~~~~~~~~~~GT~V~v~ 170 (488)
T TIGR01052 96 ----RIIQSRGQQGIGISGAVLYSQMTTGKPVKVISSTGGEIYVYKMKLKIDVQKNEGE-IVEKGEWNKPGWRGTRIELE 170 (488)
T ss_pred ----cccccCCCccEehhHHHHHHHHcCCceEEEEEecCCceEEEEEEEEecccccCCe-ecceeecCCCCCCceEEEEE
Confidence 123456899999999988765 49999987543 34455542 1222 11111111222589999998
Q ss_pred eccchhhcccHHHHHHHHHHhcCCCc
Q 005370 178 LKEDQLEYLEERRIKDLVKKHSEFIS 203 (699)
Q Consensus 178 lk~~~~~~~~~~~l~~ii~~ys~fl~ 203 (699)
....... ....++.+++++++-.-|
T Consensus 171 f~~~~~r-~~k~~i~e~l~~~Al~nP 195 (488)
T TIGR01052 171 FKGVSYR-RSKQGVYEYLRRTAVANP 195 (488)
T ss_pred ECCceee-ccHHHHHHHHHHHHhhCC
Confidence 6543211 134789999998886654
No 16
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=98.97 E-value=2.7e-09 Score=123.53 Aligned_cols=151 Identities=19% Similarity=0.291 Sum_probs=97.4
Q ss_pred HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005370 30 IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL 109 (699)
Q Consensus 30 i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~ 109 (699)
.+|+|||.||+||+..-. ..+.+.|.|........|+|.|||+||+.+++...|...+++++- .
T Consensus 49 tVLkNLIeNALDAs~~~g-----------ilp~I~V~Ie~~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf--~--- 112 (795)
T PRK14868 49 TAVKEAVDNALDATEEAG-----------ILPDIYVEIEEVGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRF--H--- 112 (795)
T ss_pred HHHHHHHHHHHHhCcccC-----------CCceEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHhhhhcccccc--c---
Confidence 689999999999986310 011234444332222469999999999999999888877755431 1
Q ss_pred hcCCCCCccccccchhhheeeec-----CeEEEEEecCC-CceEEEEE--ccCc-eEEE--EeCCCCCCCCCceEEEEEe
Q 005370 110 QAGADVSMIGQFGVGFYSAYLVA-----ERVVVTTKHND-DEQYIWES--QAGG-SFTV--TRDVSGEPLGRGTKMTLYL 178 (699)
Q Consensus 110 ~~~~~~~~iG~FGIGf~S~F~va-----d~v~V~T~~~~-~~~~~w~~--~~~~-~~~i--~~~~~~~~~~~GT~I~L~l 178 (699)
......|+.|+|+-++.+++ ..+.|.|+..+ ..++.|.. +++. .-.| ... .....++||+|++.|
T Consensus 113 ---~~~~srG~rG~GLglai~~sqlt~GgpI~I~S~~~~~~~g~~~~L~Id~gkNep~I~~~~~-~~~~~~~GT~IeV~L 188 (795)
T PRK14868 113 ---AREQSRGQQGIGISAAVLYSQLTSGKPAKITSRTQGSEEAQYFELIIDTDTNEPEISVEET-TTWDRPHGTRIELEM 188 (795)
T ss_pred ---ccccCCCCCceehHHHHHHHHHcCCCcEEEEeCCCCCCceeEEEEEEecCCCccceeccee-cccCCCCceEEEEEE
Confidence 11134589999998888776 45899998754 45654543 3321 1111 211 112458999999997
Q ss_pred ccchhhcccHHHHHHHHHHhcCCCc
Q 005370 179 KEDQLEYLEERRIKDLVKKHSEFIS 203 (699)
Q Consensus 179 k~~~~~~~~~~~l~~ii~~ys~fl~ 203 (699)
... |.-..+|.++|++++---|
T Consensus 189 f~N---~pAR~kI~eyl~r~Al~nP 210 (795)
T PRK14868 189 EAN---MRARQQLHDYIKHTAVVNP 210 (795)
T ss_pred Ecc---CchhhhHHHHHHHHHhhCC
Confidence 543 4345668888888776554
No 17
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=98.54 E-value=4e-07 Score=105.56 Aligned_cols=152 Identities=19% Similarity=0.232 Sum_probs=88.6
Q ss_pred HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCC-CCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHH
Q 005370 30 IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKA-NKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEA 108 (699)
Q Consensus 30 i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~ 108 (699)
.+++|||.||+||+.... ..+.+.|.+..... ...|+|.|||.||+.+++...|...-.+++ |.
T Consensus 39 ~VVkELVeNAIDA~~~~g-----------~~p~I~V~I~~~g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK--~~-- 103 (659)
T PRK14867 39 TIIHELVTNSLDACEEAE-----------ILPDIKVEIEKLGSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSK--MH-- 103 (659)
T ss_pred HHHHHHHHHHHHHhhccC-----------CCceEEEEEEECCCcEEEEEEEeeCeeCCHHHHhhhhccccccCc--cc--
Confidence 578999999999997311 01234444443222 235999999999999999987776432221 11
Q ss_pred HhcCCCCCccccccchhhheeeecC-----eEEEEEecCCCceE--EEEEc---cCceEEEEeCCCCCCCCCceEEEEEe
Q 005370 109 LQAGADVSMIGQFGVGFYSAYLVAE-----RVVVTTKHNDDEQY--IWESQ---AGGSFTVTRDVSGEPLGRGTKMTLYL 178 (699)
Q Consensus 109 ~~~~~~~~~iG~FGIGf~S~F~vad-----~v~V~T~~~~~~~~--~w~~~---~~~~~~i~~~~~~~~~~~GT~I~L~l 178 (699)
.-....|++|+|+.++.+++. .+.|.|+.+++..+ .|... .+|...-... ....++||+|++.+
T Consensus 104 ----~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~g~G~~f~i~L~i~i~~n~G~I~~~~~--~~~~~~GT~Ie~~V 177 (659)
T PRK14867 104 ----RLIQSRGQQGIGAAGVLLFSQITTGKPLKITTSTGDGKIHEMEIKMSVEKNEGDIVSHKV--REGFWRGTRVEGEF 177 (659)
T ss_pred ----ceeccCCCCcccHHHHHHHHHHhcCCcEEEEEEcCCCEEEEEEEEEEecccCCeeccccc--CCCCCCCcEEEEEE
Confidence 012345899999988776543 46888876544332 22221 1222111111 12357999999766
Q ss_pred ccchhhcccHHHHHHHHHHhcCCCc
Q 005370 179 KEDQLEYLEERRIKDLVKKHSEFIS 203 (699)
Q Consensus 179 k~~~~~~~~~~~l~~ii~~ys~fl~ 203 (699)
++-...-. +.++.+++++++---|
T Consensus 178 ~dLFynR~-E~~i~e~l~r~ALanP 201 (659)
T PRK14867 178 KEVTYNRR-EQGPFEYLRRISLSTP 201 (659)
T ss_pred eeceechh-hHHHHHHHHHHHHhCC
Confidence 54211111 2237888888875553
No 18
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=98.53 E-value=2.1e-07 Score=108.61 Aligned_cols=158 Identities=17% Similarity=0.161 Sum_probs=99.6
Q ss_pred chHHHHHHHhcHHH---HHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHH--------HHHHHhh
Q 005370 28 KEIFLRELISNSSD---ALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKAD--------LVNNLGT 96 (699)
Q Consensus 28 ~~i~lRELIqNA~D---A~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~e--------l~~~l~~ 96 (699)
+...|.|||.||+| |.. --+|.|.++.+ +.|+|.|||.||+.++ +.-.|+.
T Consensus 31 ~~~lv~ElvdNsiDE~~ag~-----------------a~~I~V~i~~d-~~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~ 92 (625)
T TIGR01055 31 PNHLVQEVIDNSVDEALAGF-----------------ASIIMVILHQD-QSIEVFDNGRGMPVDIHPKEGVSAVEVILTT 92 (625)
T ss_pred cceeehhhhhcccchhhcCC-----------------CCEEEEEEeCC-CeEEEEecCCccCcccccccCCcHHHHhhhc
Confidence 57799999999999 521 12566666654 8999999999999988 6655544
Q ss_pred hhccCchhHHHHHhcCCCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccCce-EEEEeCCCCCCCCCceEEE
Q 005370 97 IARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGS-FTVTRDVSGEPLGRGTKMT 175 (699)
Q Consensus 97 Ia~S~~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~~~-~~i~~~~~~~~~~~GT~I~ 175 (699)
.-.+|+- ....-....|..|+|..|+-.++.+++|.|+..+.. |.++..++.. -.+...........||+|+
T Consensus 93 lhagsK~------~~~~~~~SgG~~GvGls~vnalS~~l~v~~~r~g~~-~~~~~~~G~~~~~~~~i~~~~~~~~GT~V~ 165 (625)
T TIGR01055 93 LHAGGKF------SNKNYHFSGGLHGVGISVVNALSKRVKIKVYRQGKL-YSIAFENGAKVTDLISAGTCGKRLTGTSVH 165 (625)
T ss_pred ccccCCC------CCCcceecCCCcchhHHHHHHhcCeEEEEEEECCeE-EEEEEECCeEccccccccccCCCCCCeEEE
Confidence 4333321 111112457999999999999999999999865432 4444433211 0111110111235999999
Q ss_pred EEeccch--hhcccHHHHHHHHHHhcCCCc-cceEeec
Q 005370 176 LYLKEDQ--LEYLEERRIKDLVKKHSEFIS-YPIYLWT 210 (699)
Q Consensus 176 L~lk~~~--~~~~~~~~l~~ii~~ys~fl~-~pI~~~~ 210 (699)
....... ..-++..+|.+.++.++-..| .-|.+++
T Consensus 166 F~PD~~~F~~~~~e~~~i~~~l~~lA~lnpgi~~~l~d 203 (625)
T TIGR01055 166 FTPDPEIFDSLHFSVSRLYHILRAKAVLCRGVEIEFED 203 (625)
T ss_pred EEECHHHCCCCccCHHHHHHHHHHHHhhCCCcEEEEee
Confidence 8644321 112355788888988876553 4555554
No 19
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=98.47 E-value=4.1e-07 Score=106.54 Aligned_cols=160 Identities=17% Similarity=0.174 Sum_probs=100.4
Q ss_pred chHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHH--------HHhhhhc
Q 005370 28 KEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVN--------NLGTIAR 99 (699)
Q Consensus 28 ~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~--------~l~~Ia~ 99 (699)
+...++|||.||+|++.. . .-..|.|.++.+ +.|+|.|||.||+.+.... .|+++-.
T Consensus 38 l~~lv~EivdNaiDe~~a-g-------------~a~~I~V~i~~d-g~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lha 102 (631)
T PRK05559 38 LHHLVQEVIDNSVDEALA-G-------------HGKRIEVTLHAD-GSVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHA 102 (631)
T ss_pred hhhhhhhhhccccchhhc-C-------------CCCEEEEEEeCC-CcEEEEEcCCCCCcccccccCCcchheeeeeccc
Confidence 357999999999999742 1 123666666654 4899999999999988876 5655433
Q ss_pred cCchhHHHHHhcCCCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccCce-EEEEeCCCCCCCCCceEEEEEe
Q 005370 100 SGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGS-FTVTRDVSGEPLGRGTKMTLYL 178 (699)
Q Consensus 100 S~~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~~~-~~i~~~~~~~~~~~GT~I~L~l 178 (699)
+|+-. .......-|..|+|..++-+++.+++|.|+..+. .+.++...+.. -.+..........+||+|++..
T Consensus 103 gsKf~------~~~yk~SgGl~GvGls~vNalS~~l~V~s~r~g~-~~~~~f~~G~~~~~l~~~~~~~~~~~GT~V~f~P 175 (631)
T PRK05559 103 GGKFS------NKAYKFSGGLHGVGVSVVNALSSRLEVEVKRDGK-VYRQRFEGGDPVGPLEVVGTAGKRKTGTRVRFWP 175 (631)
T ss_pred cCccC------CccccccCcccccchhhhhhheeeEEEEEEeCCe-EEEEEEECCcCccCccccccccCCCCCcEEEEEE
Confidence 33211 1111245799999999999999999999986542 24333332211 1111111111157999999975
Q ss_pred ccch--hhcccHHHHHHHHHHhcCCCc-cceEee
Q 005370 179 KEDQ--LEYLEERRIKDLVKKHSEFIS-YPIYLW 209 (699)
Q Consensus 179 k~~~--~~~~~~~~l~~ii~~ys~fl~-~pI~~~ 209 (699)
.... ..-++.+.|.+.++.++-..| .-|.++
T Consensus 176 D~~iF~~~~~~~~~i~~~l~~~A~lnpgl~i~l~ 209 (631)
T PRK05559 176 DPKIFDSPKFSPERLKERLRSKAFLLPGLTITLN 209 (631)
T ss_pred CHHHcCCcccCHHHHHHHHHHHHhhCCCeEEEEE
Confidence 4321 112466788899998875443 344444
No 20
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.46 E-value=4.3e-07 Score=82.03 Aligned_cols=81 Identities=23% Similarity=0.363 Sum_probs=58.8
Q ss_pred hHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHH
Q 005370 29 EIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEA 108 (699)
Q Consensus 29 ~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~ 108 (699)
..++.||++||+++.... ..+.|.+..+.+...|+|.|||.||+.+++...+.... +++
T Consensus 7 ~~il~~ll~Na~~~~~~~--------------~~I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~~~~~~~-~~~------ 65 (111)
T PF02518_consen 7 RQILSELLDNAIKHSPEG--------------GKIDITIEEDDDHLSIEISDNGVGIPPEELEKLFEPFF-TSD------ 65 (111)
T ss_dssp HHHHHHHHHHHHHHHHHT--------------SEEEEEEEEETTEEEEEEEESSSSTTHHHHHHHCSTTS-HSS------
T ss_pred HHHHHHHHHHHHHHhcCC--------------CEEEEEEEEecCeEEEEEEeccccccccccccchhhcc-ccc------
Confidence 357899999999998741 24556666666667899999999999999996543322 211
Q ss_pred HhcCCCCCccccccchhhheeeecCe
Q 005370 109 LQAGADVSMIGQFGVGFYSAYLVAER 134 (699)
Q Consensus 109 ~~~~~~~~~iG~FGIGf~S~F~vad~ 134 (699)
.+....+.+|+|++.|..+++.
T Consensus 66 ----~~~~~~~g~GlGL~~~~~~~~~ 87 (111)
T PF02518_consen 66 ----KSETSISGHGLGLYIVKQIAER 87 (111)
T ss_dssp ----SSSGGSSSSSHHHHHHHHHHHH
T ss_pred ----ccccccCCCChHHHHHHHHHHH
Confidence 1234567799999999888765
No 21
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=98.42 E-value=5.2e-07 Score=105.08 Aligned_cols=155 Identities=19% Similarity=0.227 Sum_probs=92.7
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHH-------HHHhhhhccCch
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLV-------NNLGTIARSGTK 103 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~-------~~l~~Ia~S~~~ 103 (699)
.++|||.||+||... . .--.|.|.++.+ +.|+|.|||.||+.+... ..+.++..+|.+
T Consensus 5 ~v~ElvdNAiD~~~~-g-------------~at~I~V~i~~~-g~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~k 69 (594)
T smart00433 5 LVDEIVDNAADEALA-G-------------YMDTIKVTIDKD-NSISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGK 69 (594)
T ss_pred EEeeehhcccchhcc-C-------------CCCEEEEEEeCC-CeEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCC
Confidence 578999999999742 1 123667766654 499999999999953321 112222222221
Q ss_pred hHHHHHhcCCCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccCceEEEEeC-CCCCCCCCceEEEEEeccch
Q 005370 104 EFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRD-VSGEPLGRGTKMTLYLKEDQ 182 (699)
Q Consensus 104 ~f~~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~~~~~i~~~-~~~~~~~~GT~I~L~lk~~~ 182 (699)
| ........-|..|+|..|+-+++.+++|.|+..+. .+.++...+|. .+.+. ..+.....||+|+.. ++.
T Consensus 70 -f----d~~~~k~s~G~~G~Gls~vnalS~~l~v~~~~~g~-~~~~~~~~~G~-~~~~~~~~~~~~~~GT~V~F~--Pd~ 140 (594)
T smart00433 70 -F----DDDAYKVSGGLHGVGASVVNALSTEFEVEVARDGK-EYKQSFSNNGK-PLSEPKIIGDTKKDGTKVTFK--PDL 140 (594)
T ss_pred -C----CCCCccccCCcccchHHHHHHhcCceEEEEEeCCc-EEEEEEeCCCe-ECccceecCCCCCCCcEEEEE--ECH
Confidence 1 10111235799999999999999999999987533 34433322121 11110 011234799999964 443
Q ss_pred hhcc-----cHHHHHHHHHHhcCCCc-cceEee
Q 005370 183 LEYL-----EERRIKDLVKKHSEFIS-YPIYLW 209 (699)
Q Consensus 183 ~~~~-----~~~~l~~ii~~ys~fl~-~pI~~~ 209 (699)
.-|. +...|.+.++.++-..| .-|.++
T Consensus 141 ~~F~~~~~~~~~~i~~rl~~~A~l~pgl~i~l~ 173 (594)
T smart00433 141 EIFGMTTDDDFELLKRRLRELAFLNKGVKITLN 173 (594)
T ss_pred HHhCCcccchHHHHHHHHHHHHhcCCCcEEEEe
Confidence 3342 34678888988875443 344444
No 22
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=98.33 E-value=1.3e-06 Score=102.34 Aligned_cols=156 Identities=20% Similarity=0.214 Sum_probs=93.4
Q ss_pred hHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHH-------HHHhhhhccC
Q 005370 29 EIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLV-------NNLGTIARSG 101 (699)
Q Consensus 29 ~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~-------~~l~~Ia~S~ 101 (699)
...++|||.||+|.... . .-..|.|.++.+ +.|+|.|||.||+.+--. ..+.++..+|
T Consensus 39 ~~~v~ElvdNaiDe~~a-g-------------~a~~I~V~i~~~-g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lhag 103 (638)
T PRK05644 39 HHLVYEIVDNSIDEALA-G-------------YCDHIEVTINED-GSITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHAG 103 (638)
T ss_pred HhhhHHhhhcccccccC-C-------------CCCEEEEEEeCC-CcEEEEEeCccccCCccCCCCCCchHHheeeeccc
Confidence 35899999999994310 0 113566666654 599999999999975211 1122232222
Q ss_pred chhHHHHHhcCCCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccCceE-EEEeCCCCCCCCCceEEEEEecc
Q 005370 102 TKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSF-TVTRDVSGEPLGRGTKMTLYLKE 180 (699)
Q Consensus 102 ~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~~~~-~i~~~~~~~~~~~GT~I~L~lk~ 180 (699)
.+ | .........|..|+|..|+-.++.+++|+|+..+. ++..+..++..- .+... +.....||+|+.. +
T Consensus 104 ~k-f----d~~~yk~s~G~~G~Gls~vnalS~~~~v~t~r~g~-~~~~~~~~G~~~~~~~~~--~~~~~~GT~I~F~--P 173 (638)
T PRK05644 104 GK-F----GGGGYKVSGGLHGVGVSVVNALSTWLEVEVKRDGK-IYYQEYERGVPVTPLEVI--GETDETGTTVTFK--P 173 (638)
T ss_pred Cc-c----CCCcccccCCccccchhhhhheeceEEEEEEeCCc-EEEEEEECCeEccCcccc--CCcCCCCcEEEEE--E
Confidence 21 1 00111235799999999999999999999986533 554444432110 11111 2235799999964 3
Q ss_pred chhhc----ccHHHHHHHHHHhcCCCc-cceEee
Q 005370 181 DQLEY----LEERRIKDLVKKHSEFIS-YPIYLW 209 (699)
Q Consensus 181 ~~~~~----~~~~~l~~ii~~ys~fl~-~pI~~~ 209 (699)
+..-| ++...|.+.++.++-..| .-|.++
T Consensus 174 d~~~F~~~~~e~~~i~~rl~~~A~l~pgl~i~l~ 207 (638)
T PRK05644 174 DPEIFETTEFDYDTLATRLRELAFLNKGLKITLT 207 (638)
T ss_pred CHHHcCCcccCHHHHHHHHHHHHhhCCCcEEEEE
Confidence 33222 466789999998875543 344444
No 23
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=98.28 E-value=2e-06 Score=101.31 Aligned_cols=157 Identities=19% Similarity=0.174 Sum_probs=93.0
Q ss_pred hHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHH--------HHHHHhhhhcc
Q 005370 29 EIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKAD--------LVNNLGTIARS 100 (699)
Q Consensus 29 ~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~e--------l~~~l~~Ia~S 100 (699)
...++|||.||+|-... . .-..|.|.++. ++.|+|.|||.||+.+- +. .+.++..+
T Consensus 32 ~~vv~Elv~NaiDe~~a-g-------------~a~~I~V~i~~-~g~I~V~DnG~GIp~~~h~~~ki~~~e-~i~~~l~a 95 (654)
T TIGR01059 32 HHLVYEVVDNSIDEAMA-G-------------YCDTINVTIND-DGSVTVEDNGRGIPVDIHPEEGISAVE-VVLTVLHA 95 (654)
T ss_pred HhhhHHhhhcccccccc-C-------------CCCEEEEEEeC-CCcEEEEEeCCCcCccccCcCCCCchH-Hheeeecc
Confidence 46899999999993210 0 01256666654 35699999999999751 11 12222222
Q ss_pred CchhHHHHHhcCCCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccCceEE-EEeCCCCCCCCCceEEEEEec
Q 005370 101 GTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFT-VTRDVSGEPLGRGTKMTLYLK 179 (699)
Q Consensus 101 ~~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~~~~~-i~~~~~~~~~~~GT~I~L~lk 179 (699)
|.+ |- ........|..|+|..|+-.++..++|.|+..+. .+..+..++..-. +... +.....||+|+....
T Consensus 96 g~k-f~----~~~~k~s~G~~G~gl~~inalS~~l~v~~~~~g~-~~~~~~~~G~~~~~l~~~--~~~~~~GT~V~F~pd 167 (654)
T TIGR01059 96 GGK-FD----KDSYKVSGGLHGVGVSVVNALSEWLEVTVFRDGK-IYRQEFERGIPLGPLEVV--GETKKTGTTVRFWPD 167 (654)
T ss_pred cCc-cC----CCcceecCCccchhHHHHHHhcCeEEEEEEECCe-EEEEEEeCCCcccCceec--cCCCCCCcEEEEEEC
Confidence 221 11 1112245799999999999999999999986543 2443333321111 1111 234579999996654
Q ss_pred cch--hhcccHHHHHHHHHHhcCCCc-cceEee
Q 005370 180 EDQ--LEYLEERRIKDLVKKHSEFIS-YPIYLW 209 (699)
Q Consensus 180 ~~~--~~~~~~~~l~~ii~~ys~fl~-~pI~~~ 209 (699)
+.. ..-++...|.+.++.++-..| .-|.++
T Consensus 168 p~~F~~~~~e~~~i~~rl~~~A~l~pgl~i~l~ 200 (654)
T TIGR01059 168 PEIFETTEFDFDILAKRLRELAFLNSGVKISLE 200 (654)
T ss_pred hHHhCCcccCHHHHHHHHHHhhccCCCeEEEEE
Confidence 432 122366789999999984433 334443
No 24
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=98.25 E-value=4.7e-06 Score=93.10 Aligned_cols=151 Identities=26% Similarity=0.283 Sum_probs=94.8
Q ss_pred hcCCCCchHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCC-CEEEEEeCCCCCCHHHHHHHHhhhhcc
Q 005370 22 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKAN-KTLTIVDSGIGMTKADLVNNLGTIARS 100 (699)
Q Consensus 22 ~~LYs~~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~-~~l~I~DnGiGMt~~el~~~l~~Ia~S 100 (699)
-.+..-|.-+|.|||.|+.||.+ ..|.|.+..++ +-|.|.|||.|+-++||.-..-+...|
T Consensus 22 GEVI~RP~NAlKEliENSLDA~S------------------T~I~V~vk~GGLKLlQisDnG~GI~reDl~ilCeRftTS 83 (694)
T KOG1979|consen 22 GEVIQRPVNALKELIENSLDANS------------------TSIDVLVKDGGLKLLQISDNGSGIRREDLPILCERFTTS 83 (694)
T ss_pred cchhhchHHHHHHHHhccccCCC------------------ceEEEEEecCCeEEEEEecCCCccchhhhHHHHHHhhhh
Confidence 45666788899999999999975 36777775555 457899999999999998444444444
Q ss_pred CchhHHHHHhcCCCCCccccccchh--hheeeecCeEEEEEecCCC-ceEEEEEccCceEEEEeCCCCCCCCCceEEEEE
Q 005370 101 GTKEFMEALQAGADVSMIGQFGVGF--YSAYLVAERVVVTTKHNDD-EQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLY 177 (699)
Q Consensus 101 ~~~~f~~~~~~~~~~~~iG~FGIGf--~S~F~vad~v~V~T~~~~~-~~~~w~~~~~~~~~i~~~~~~~~~~~GT~I~L~ 177 (699)
.-..|- |...|..||..- +|+..-+-+|+|+|+..++ .+|.- +..+|... ..+++-....||.|++.
T Consensus 84 KL~kFE-------DL~~lsTyGFRGEALASiShVA~VtV~TK~~~~~cayra-sY~DGkm~--~~pKpcAgk~GT~I~ve 153 (694)
T KOG1979|consen 84 KLTKFE-------DLFSLSTYGFRGEALASISHVAHVTVTTKTAEGKCAYRA-SYRDGKMI--ATPKPCAGKQGTIITVE 153 (694)
T ss_pred hcchhH-------HHHhhhhcCccHHHHhhhhheeEEEEEEeecCceeeeEE-Eeeccccc--cCCCCccCCCceEEEeh
Confidence 322232 233344555432 3444445689999997644 33322 23344322 22333345799999986
Q ss_pred -e--c---------cchhhcccHHHHHHHHHHhcCCCc
Q 005370 178 -L--K---------EDQLEYLEERRIKDLVKKHSEFIS 203 (699)
Q Consensus 178 -l--k---------~~~~~~~~~~~l~~ii~~ys~fl~ 203 (699)
| + ...++| .+|-.++.+|+-+-+
T Consensus 154 dLFYN~~~Rrkal~~~~EE~---~ki~dlv~ryAIHn~ 188 (694)
T KOG1979|consen 154 DLFYNMPTRRKALRNHAEEY---RKIMDLVGRYAIHNP 188 (694)
T ss_pred HhhccCHHHHHHhcCcHHHH---HHHHHHHHHHheeCC
Confidence 1 1 112333 568888999987753
No 25
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=98.23 E-value=2.5e-06 Score=100.88 Aligned_cols=153 Identities=16% Similarity=0.202 Sum_probs=94.1
Q ss_pred hHHHHHHHhcHHH---HHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHH----------HHHHHHh
Q 005370 29 EIFLRELISNSSD---ALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKA----------DLVNNLG 95 (699)
Q Consensus 29 ~i~lRELIqNA~D---A~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~----------el~~~l~ 95 (699)
...++|||.||+| |+- .-.|.|.++.+ +.|+|.|||.||+.+ |+. |+
T Consensus 39 hhlv~EivdNaiDE~~AG~-----------------a~~I~V~i~~d-gsIsV~DnGrGIPvd~h~~~g~~~~Elv--lt 98 (756)
T PRK14939 39 HHMVYEVVDNAIDEALAGH-----------------CDDITVTIHAD-GSVSVSDNGRGIPTDIHPEEGVSAAEVI--MT 98 (756)
T ss_pred hhhhhHhhcccccccccCC-----------------CCEEEEEEcCC-CeEEEEEcCCcccCCcccccCCchhhhe--ee
Confidence 4689999999999 431 13566666654 599999999999987 443 33
Q ss_pred hhhccCchhHHHHHhcCCCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccCceEE-EEeCCCCCCCCCceEE
Q 005370 96 TIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFT-VTRDVSGEPLGRGTKM 174 (699)
Q Consensus 96 ~Ia~S~~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~~~~~-i~~~~~~~~~~~GT~I 174 (699)
...+|.+ | ....-.-.-|..|+|..++-.++.+++|.|+..+. .|..+...+..-. +... +.....||+|
T Consensus 99 -~lhAggK-f----d~~~ykvSgGlhGvG~svvNAlS~~l~v~v~r~gk-~~~q~f~~G~~~~~l~~~--g~~~~~GT~V 169 (756)
T PRK14939 99 -VLHAGGK-F----DQNSYKVSGGLHGVGVSVVNALSEWLELTIRRDGK-IHEQEFEHGVPVAPLKVV--GETDKTGTEV 169 (756)
T ss_pred -eecccCC-C----CCCcccccCCccCccceEeehccCeEEEEEEeCCe-EEEEEEecCccccCcccc--CCcCCCCcEE
Confidence 3333322 1 11111124699999999999999999999986543 2433333221101 1111 2235799999
Q ss_pred EEEeccch--hhcccHHHHHHHHHHhcCCC-ccceEeec
Q 005370 175 TLYLKEDQ--LEYLEERRIKDLVKKHSEFI-SYPIYLWT 210 (699)
Q Consensus 175 ~L~lk~~~--~~~~~~~~l~~ii~~ys~fl-~~pI~~~~ 210 (699)
+....... ..-++...|.+.++.++-.- ..-|.+++
T Consensus 170 ~F~PD~~iF~~~~~~~~~i~~rl~elA~lnpgl~i~l~d 208 (756)
T PRK14939 170 RFWPSPEIFENTEFDYDILAKRLRELAFLNSGVRIRLKD 208 (756)
T ss_pred EEEECHHHcCCcccCHHHHHHHHHHHhhcCCCCEEEEec
Confidence 99654322 11246678888888887433 24445544
No 26
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=98.18 E-value=3.2e-06 Score=96.48 Aligned_cols=160 Identities=18% Similarity=0.201 Sum_probs=97.4
Q ss_pred HHHHHhcCCCCchHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcC-CCCEEEEEeCCCCCCHHHHHHHHh
Q 005370 17 LSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDK-ANKTLTIVDSGIGMTKADLVNNLG 95 (699)
Q Consensus 17 l~ll~~~LYs~~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~-~~~~l~I~DnGiGMt~~el~~~l~ 95 (699)
-.|-+.+...+...+|+|||.||.||+++ .|+|.++. +-..|.|.|||.|++..+....-.
T Consensus 10 hrI~S~qvI~sl~sAVKELvENSiDAGAT------------------~I~I~~kdyG~d~IEV~DNG~GI~~~n~~~l~l 71 (672)
T KOG1978|consen 10 HRICSSQVITSLVSAVKELVENSIDAGAT------------------AIDIKVKDYGSDSIEVSDNGSGISATDFEGLAL 71 (672)
T ss_pred hccccCCeeccHHHHHHHHHhcCcccCCc------------------eeeEecCCCCcceEEEecCCCCCCccchhhhhh
Confidence 34455566667789999999999999973 56666643 346799999999999998874111
Q ss_pred hhhccCchhHHHHHhcCCCCCccccccchhhheeeecCeEEEEEecC-CCceEEEEEccCceEEEEeCCCCCCCCCceEE
Q 005370 96 TIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHN-DDEQYIWESQAGGSFTVTRDVSGEPLGRGTKM 174 (699)
Q Consensus 96 ~Ia~S~~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~-~~~~~~w~~~~~~~~~i~~~~~~~~~~~GT~I 174 (699)
..-.|.-..|.+- ....-.|..|=.+ |+.+.-..|.|.|++. +..|..|.-+..|...-.. .-+.++||+|
T Consensus 72 kh~TSKi~~f~Dl----~~l~T~GFRGEAL-SsLCa~~dv~I~Trt~~~~vgt~l~~Dh~G~I~~k~---~~ar~~GTTV 143 (672)
T KOG1978|consen 72 KHTTSKIVSFADL----AVLFTLGFRGEAL-SSLCALGDVMISTRSHSAKVGTRLVYDHDGHIIQKK---PVARGRGTTV 143 (672)
T ss_pred hhhhhcccchhhh----hhhhhhhhHHHHH-HhhhhccceEEEEeeccCccceeEEEccCCceeeec---cccCCCCCEE
Confidence 1111221122110 1123445555555 5555445588888874 4567888888777544221 1356899999
Q ss_pred EEE-e----ccchhhcc-----cHHHHHHHHHHhcCCC
Q 005370 175 TLY-L----KEDQLEYL-----EERRIKDLVKKHSEFI 202 (699)
Q Consensus 175 ~L~-l----k~~~~~~~-----~~~~l~~ii~~ys~fl 202 (699)
.+. | .....+|- +..++..++..|+-+-
T Consensus 144 ~v~~LF~tLPVR~kef~r~~Kref~k~i~li~~y~li~ 181 (672)
T KOG1978|consen 144 MVRQLFSTLPVRRKEFQRNIKRKFVKLISLIQAYALIS 181 (672)
T ss_pred EHhhhcccCCCchHHhhcchhhhhhhHHhhHHHHHhhc
Confidence 976 2 11111221 1234677777777654
No 27
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=97.69 E-value=1.9e-05 Score=89.64 Aligned_cols=126 Identities=21% Similarity=0.243 Sum_probs=76.2
Q ss_pred CchHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHH
Q 005370 27 NKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFM 106 (699)
Q Consensus 27 ~~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~ 106 (699)
+-.-+++||++|++||.++ .|.|.++-..-.+.|.|||+||+++||. .||+--..++-.|.
T Consensus 21 sla~~VeElv~NSiDA~At------------------~V~v~V~~~t~sv~ViDdG~G~~rdDl~-~lg~ry~TSK~h~~ 81 (1142)
T KOG1977|consen 21 SLAQCVEELVLNSIDAEAT------------------CVAVRVNMETFSVQVIDDGFGMGRDDLE-KLGNRYFTSKCHSV 81 (1142)
T ss_pred HHHHHHHHHHhhccccCce------------------EEEEEecCceeEEEEEecCCCccHHHHH-HHHhhhhhhhceec
Confidence 4567999999999999873 4555555567889999999999999998 55543222221121
Q ss_pred HHHhcCCCCCccccccchhhheeeecCeEEEEEecCCC-ceEE--EEEccCceEEEEeCCCCCCCCCceEEEEE
Q 005370 107 EALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDD-EQYI--WESQAGGSFTVTRDVSGEPLGRGTKMTLY 177 (699)
Q Consensus 107 ~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~-~~~~--w~~~~~~~~~i~~~~~~~~~~~GT~I~L~ 177 (699)
.-+ ......|..|=.++|.--++. ++|+|++.+. .++. -...|...-.+..+ ..+...||+|+++
T Consensus 82 ndl---~~~~tyGfRGeALasIsd~s~-l~v~skkk~r~~~~~~kk~~~gs~~~~l~iD--~~R~~sGTtVtV~ 149 (1142)
T KOG1977|consen 82 NDL---ENPRTYGFRGEALASISDMSS-LVVISKKKNRTMKTFVKKFQSGSALKALEID--VTRASSGTTVTVY 149 (1142)
T ss_pred ccc---ccccccccchhhhhhhhhhhh-hhhhhhhcCCchhHHHHHHhccccceecccc--cccccCCcEEEeH
Confidence 111 123456777777766655544 5577765433 2322 11122222222222 2456899999987
No 28
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=97.32 E-value=0.00077 Score=79.25 Aligned_cols=158 Identities=18% Similarity=0.220 Sum_probs=93.4
Q ss_pred hHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHH-------HH-Hhhhhcc
Q 005370 29 EIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLV-------NN-LGTIARS 100 (699)
Q Consensus 29 ~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~-------~~-l~~Ia~S 100 (699)
...+.|+|.||+|-... . ..-.|.|.++. ++.|+|.|||.||+.+--. .. |+.+-.+
T Consensus 36 ~hlv~EIvdNavDE~~a-g-------------~~~~I~V~i~~-dgsitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaG 100 (637)
T TIGR01058 36 HHLVWEIVDNSVDEVLA-G-------------YADNITVTLHK-DNSITVQDDGRGIPTGIHQDGNISTVETVFTVLHAG 100 (637)
T ss_pred heehhhhhcchhhhhhc-C-------------CCcEEEEEEcC-CCeEEEEECCCcccCcccCcCCCccceeEEEEeccc
Confidence 45788999999995321 1 12367777764 5699999999999863111 11 2222222
Q ss_pred CchhHHHHHhcCCCCCccccccchhhheeeecCeEEEEEecCCCc-eEEEEEccCceEEEEeC-CCCCCCCCceEEEEEe
Q 005370 101 GTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDE-QYIWESQAGGSFTVTRD-VSGEPLGRGTKMTLYL 178 (699)
Q Consensus 101 ~~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~-~~~w~~~~~~~~~i~~~-~~~~~~~~GT~I~L~l 178 (699)
|+ | ..+.-.-.-|.-|+|.-.+=+++.+++|.++..+.. ...|+..+. .+.+. ..+....+||+|+...
T Consensus 101 gk--f----d~~~ykvSGGlhGvG~svvNAlS~~~~V~v~r~gk~~~q~f~~Gg~---~~~~l~~~~~~~~~GT~V~F~P 171 (637)
T TIGR01058 101 GK--F----DQGGYKTAGGLHGVGASVVNALSSWLEVTVKRDGQIYQQRFENGGK---IVQSLKKIGTTKKTGTLVHFHP 171 (637)
T ss_pred Cc--C----CCCcccccCCcccccccccceeeceEEEEEEECCEEEEEEEecCCc---CcCCcccccCCCCCceEEEEEe
Confidence 22 1 000112245999999999999999999999754321 223432111 11111 0123347999999887
Q ss_pred ccchh--hcccHHHHHHHHHHhcCCC-ccceEeec
Q 005370 179 KEDQL--EYLEERRIKDLVKKHSEFI-SYPIYLWT 210 (699)
Q Consensus 179 k~~~~--~~~~~~~l~~ii~~ys~fl-~~pI~~~~ 210 (699)
..... .-++.+.|.+-++..+-.. ..-|.+++
T Consensus 172 D~~iF~~~~f~~d~l~~RlrelA~Ln~GL~I~l~d 206 (637)
T TIGR01058 172 DPTIFKTTQFNSNIIKERLKESAFLLKKLKLTFTD 206 (637)
T ss_pred CHHHcCCCccCHHHHHHHHHHHhccCCCcEEEEEe
Confidence 65431 1246677888888877544 35666664
No 29
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=97.30 E-value=0.00045 Score=75.02 Aligned_cols=101 Identities=19% Similarity=0.287 Sum_probs=61.6
Q ss_pred HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005370 30 IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL 109 (699)
Q Consensus 30 i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~ 109 (699)
.++..||.||+.+.. ....+.|.+..+.+.-.|+|+|||+||+++++.+.+. .....
T Consensus 250 ~il~nLi~NA~k~~~--------------~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~-~f~~~-------- 306 (356)
T PRK10755 250 LLLRNLVENAHRYSP--------------EGSTITIKLSQEDGGAVLAVEDEGPGIDESKCGELSK-AFVRM-------- 306 (356)
T ss_pred HHHHHHHHHHHhhCC--------------CCCcEEEEEEEcCCEEEEEEEECCCCCCHHHHHHhCC-CeEeC--------
Confidence 367888888876642 1234556655555556799999999999999885332 11110
Q ss_pred hcCCCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccCceEEEEeCCCCCCCCCceEEEEEecc
Q 005370 110 QAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKE 180 (699)
Q Consensus 110 ~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~~~~~i~~~~~~~~~~~GT~I~L~lk~ 180 (699)
+ ..-|.+|+|++-|-.+++.. +|.+.+... ....||+|++.+..
T Consensus 307 ----~-~~~~g~GlGL~i~~~i~~~~------------------gg~i~i~s~----~~~~Gt~~~i~~p~ 350 (356)
T PRK10755 307 ----D-SRYGGIGLGLSIVSRITQLH------------------HGQFFLQNR----QERSGTRAWVWLPK 350 (356)
T ss_pred ----C-CCCCCcCHHHHHHHHHHHHC------------------CCEEEEEEC----CCCCeEEEEEEecC
Confidence 0 11256899998776665421 234455431 11278888888753
No 30
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.30 E-value=0.001 Score=56.86 Aligned_cols=86 Identities=21% Similarity=0.302 Sum_probs=57.1
Q ss_pred HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005370 30 IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL 109 (699)
Q Consensus 30 i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~ 109 (699)
.+++||+.||.++... ....+.|.+..+...-.|.|.|+|.||+...+...+...+.+
T Consensus 3 ~~~~~ll~Na~~~~~~-------------~~~~v~i~~~~~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~~--------- 60 (103)
T cd00075 3 QVLLNLLSNAIKHTPE-------------GGGRITISVERDGDHLEIRVEDNGPGIPEEDLERIFERFSDG--------- 60 (103)
T ss_pred HHHHHHHHHHHHhCcC-------------CCCeEEEEEEecCCEEEEEEEeCCCCCCHHHHHHHhhhhhcC---------
Confidence 4789999999999752 012355655555444568999999999999887554332111
Q ss_pred hcCCCCCccccccchhhheeeecC----eEEEEEe
Q 005370 110 QAGADVSMIGQFGVGFYSAYLVAE----RVVVTTK 140 (699)
Q Consensus 110 ~~~~~~~~iG~FGIGf~S~F~vad----~v~V~T~ 140 (699)
......+.+|+|+..+-.+++ .+.+.+.
T Consensus 61 ---~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~ 92 (103)
T cd00075 61 ---SRSRKGGGTGLGLSIVKKLVELHGGRIEVESE 92 (103)
T ss_pred ---CCCCCCCccccCHHHHHHHHHHcCCEEEEEeC
Confidence 112234689999998877766 5555543
No 31
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=97.16 E-value=0.0007 Score=80.61 Aligned_cols=74 Identities=24% Similarity=0.309 Sum_probs=48.7
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHh
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQ 110 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~~ 110 (699)
.+.+||+||.++... ...+.|++..+.+.-.|+|.|||.||+++.+.+.+..-..+++
T Consensus 583 vl~nLl~NAik~~~~--------------~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~-------- 640 (679)
T TIGR02916 583 VLGHLVQNALEATPG--------------EGRVAIRVERECGAARIEIEDSGCGMSPAFIRERLFKPFDTTK-------- 640 (679)
T ss_pred HHHHHHHHHHHhCCC--------------CCcEEEEEEEcCCEEEEEEEEcCCCcChHHHHHhcCCCCCCCC--------
Confidence 688999999988531 1234555554444456999999999999885544433222211
Q ss_pred cCCCCCccccccchhhheeeecC
Q 005370 111 AGADVSMIGQFGVGFYSAYLVAE 133 (699)
Q Consensus 111 ~~~~~~~iG~FGIGf~S~F~vad 133 (699)
. +..|+|++.+-.+++
T Consensus 641 ----~---~G~GLGL~i~~~iv~ 656 (679)
T TIGR02916 641 ----G---AGMGIGVYECRQYVE 656 (679)
T ss_pred ----C---CCcchhHHHHHHHHH
Confidence 1 567999988866543
No 32
>PRK10604 sensor protein RstB; Provisional
Probab=97.07 E-value=0.001 Score=74.80 Aligned_cols=77 Identities=17% Similarity=0.251 Sum_probs=49.1
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHh
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQ 110 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~~ 110 (699)
++..||.||+.+.. ..+.|.+..+.+.-.|+|.|||.||+.+++.+-+....+...
T Consensus 323 vl~NLl~NAik~~~----------------~~I~I~~~~~~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~-------- 378 (433)
T PRK10604 323 VLDNLLNNALRYAH----------------SRVRVSLLLDGNQACLIVEDDGPGIPPEERERVFEPFVRLDP-------- 378 (433)
T ss_pred HHHHHHHHHHHhCC----------------CeEEEEEEEECCEEEEEEEEcCCCCCHHHHhhcCCCCccCCC--------
Confidence 67888888877642 235666666655567999999999999998854433221110
Q ss_pred cCCCCCccccccchhhheeeecC
Q 005370 111 AGADVSMIGQFGVGFYSAYLVAE 133 (699)
Q Consensus 111 ~~~~~~~iG~FGIGf~S~F~vad 133 (699)
+....-|.+|+|+.-+-.+++
T Consensus 379 --~~~~~~~g~GLGL~ivk~i~~ 399 (433)
T PRK10604 379 --SRDRATGGCGLGLAIVHSIAL 399 (433)
T ss_pred --CCCCCCCCccchHHHHHHHHH
Confidence 111234678999976654443
No 33
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=96.94 E-value=0.0018 Score=72.63 Aligned_cols=79 Identities=23% Similarity=0.283 Sum_probs=47.9
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHh
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQ 110 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~~ 110 (699)
++..||.||+.+.. ....+.|.+..+.+.-.|+|.|||.||+.+++.+.+...-+ +.
T Consensus 356 vl~nll~NAi~~~~--------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~-~~-------- 412 (466)
T PRK10549 356 LFNNLLENSLRYTD--------------SGGSLHISAEQRDKTLRLTFADSAPGVSDEQLQKLFERFYR-TE-------- 412 (466)
T ss_pred HHHHHHHHHHHhCC--------------CCCEEEEEEEEcCCEEEEEEEecCCCcCHHHHHHhccCccc-CC--------
Confidence 56677788777642 12234555555544456899999999999988854432211 11
Q ss_pred cCCCCCccccccchhhheeeecC
Q 005370 111 AGADVSMIGQFGVGFYSAYLVAE 133 (699)
Q Consensus 111 ~~~~~~~iG~FGIGf~S~F~vad 133 (699)
+......|..|+|++-+-.+++
T Consensus 413 -~~~~~~~~g~GlGL~iv~~i~~ 434 (466)
T PRK10549 413 -GSRNRASGGSGLGLAICLNIVE 434 (466)
T ss_pred -CCcCCCCCCCcHHHHHHHHHHH
Confidence 0112244678999987655544
No 34
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=96.89 E-value=0.0029 Score=70.77 Aligned_cols=102 Identities=22% Similarity=0.175 Sum_probs=61.1
Q ss_pred HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005370 30 IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL 109 (699)
Q Consensus 30 i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~ 109 (699)
..+.+||.||+.+.. +...+.|.+..+.+.-.|+|.|||.||+.+++...+ ....+...
T Consensus 371 ~vl~nli~Na~~~~~--------------~~~~i~i~~~~~~~~~~i~i~D~G~Gi~~~~~~~i~-~~~~~~~~------ 429 (475)
T PRK11100 371 QALGNLLDNAIDFSP--------------EGGTITLSAEVDGEQVALSVEDQGPGIPDYALPRIF-ERFYSLPR------ 429 (475)
T ss_pred HHHHHHHHHHHHhCC--------------CCCEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHH-HHHccCCC------
Confidence 357788888887642 112345555555555679999999999999888544 22222110
Q ss_pred hcCCCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccCceEEEEeCCCCCCCCCceEEEEEec
Q 005370 110 QAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLK 179 (699)
Q Consensus 110 ~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~~~~~i~~~~~~~~~~~GT~I~L~lk 179 (699)
+ ...-+..|+|++.|-.++... +|.+.+... .+.||+|++.+.
T Consensus 430 ---~-~~~~~~~GlGL~i~~~~~~~~------------------~G~i~i~s~-----~~~Gt~v~i~lp 472 (475)
T PRK11100 430 ---P-ANGRKSTGLGLAFVREVARLH------------------GGEVTLRNR-----PEGGVLATLTLP 472 (475)
T ss_pred ---C-CCCCCCcchhHHHHHHHHHHC------------------CCEEEEEEc-----CCCeEEEEEEee
Confidence 0 112245799998876654321 234455432 246898888764
No 35
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=96.88 E-value=0.0027 Score=55.09 Aligned_cols=81 Identities=19% Similarity=0.238 Sum_probs=54.0
Q ss_pred HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005370 30 IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL 109 (699)
Q Consensus 30 i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~ 109 (699)
.++.||+.||+++... ...+.|.+..+.....|.|.|+|.||+.+.+...+.... ++.
T Consensus 8 ~~~~~l~~n~~~~~~~--------------~~~v~i~~~~~~~~~~i~i~d~g~g~~~~~~~~~~~~~~-~~~------- 65 (111)
T smart00387 8 QVLSNLLDNAIKYTPE--------------GGRITVTLERDGDHLEITVEDNGPGIPPEDLEKIFEPFF-RTD------- 65 (111)
T ss_pred HHHHHHHHHHHhcCCC--------------CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHhcCeE-ECC-------
Confidence 3578888998888642 124566666655556799999999999988886543321 111
Q ss_pred hcCCCCCccccccchhhheeeecCeE
Q 005370 110 QAGADVSMIGQFGVGFYSAYLVAERV 135 (699)
Q Consensus 110 ~~~~~~~~iG~FGIGf~S~F~vad~v 135 (699)
......++.|+|+..+-.++.+.
T Consensus 66 ---~~~~~~~~~g~gl~~~~~~~~~~ 88 (111)
T smart00387 66 ---GRSRKIGGTGLGLSIVKKLVELH 88 (111)
T ss_pred ---CCCCCCCcccccHHHHHHHHHHc
Confidence 11234567999999887776543
No 36
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=96.84 E-value=0.0031 Score=70.50 Aligned_cols=78 Identities=15% Similarity=0.190 Sum_probs=49.1
Q ss_pred HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEE--cCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHH
Q 005370 30 IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIP--DKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFME 107 (699)
Q Consensus 30 i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~--d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~ 107 (699)
.++..|+.||.++..... .....|.|.. ..+.-.|+|.|||+||+.+...+.|-.. .+++
T Consensus 390 ~vl~Nl~~NAik~~~~~~------------~~~~~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~~~iF~~f-~~~~----- 451 (494)
T TIGR02938 390 SLFKALVDNAIEAMNIKG------------WKRRELSITTALNGDLIVVSILDSGPGIPQDLRYKVFEPF-FTTK----- 451 (494)
T ss_pred HHHHHHHHHHHHHhhccC------------CCcceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhcCCC-cccC-----
Confidence 478999999999976310 1123455543 4444569999999999998887544322 1111
Q ss_pred HHhcCCCCCccccccchhhheeeec
Q 005370 108 ALQAGADVSMIGQFGVGFYSAYLVA 132 (699)
Q Consensus 108 ~~~~~~~~~~iG~FGIGf~S~F~va 132 (699)
....+.-|+|++.+-.++
T Consensus 452 -------~~~~~G~GlGL~i~~~iv 469 (494)
T TIGR02938 452 -------GGSRKHIGMGLSVAQEIV 469 (494)
T ss_pred -------CCCCCCCcccHHHHHHHH
Confidence 111455789998776553
No 37
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=96.83 E-value=0.0032 Score=71.99 Aligned_cols=75 Identities=19% Similarity=0.227 Sum_probs=48.4
Q ss_pred HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005370 30 IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL 109 (699)
Q Consensus 30 i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~ 109 (699)
.++.+|+.||++|+.. .....+.|.+..+.+.-.|+|.|||.||+.++..+.|. -+.|++
T Consensus 436 ~vl~nLl~NAi~~~~~------------~~~~~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~iF~-~~~~~~------- 495 (542)
T PRK11086 436 TILGNLIENALEAVGG------------EEGGEISVSLHYRNGWLHCEVSDDGPGIAPDEIDAIFD-KGYSTK------- 495 (542)
T ss_pred HHHHHHHHHHHHHhhc------------CCCcEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHh-CCCccC-------
Confidence 4678999999999742 01123445554444445689999999999998885543 222221
Q ss_pred hcCCCCCccccccchhhheeeec
Q 005370 110 QAGADVSMIGQFGVGFYSAYLVA 132 (699)
Q Consensus 110 ~~~~~~~~iG~FGIGf~S~F~va 132 (699)
-+..|+|+..+-.++
T Consensus 496 --------~~g~GlGL~iv~~iv 510 (542)
T PRK11086 496 --------GSNRGVGLYLVKQSV 510 (542)
T ss_pred --------CCCCcCcHHHHHHHH
Confidence 134599997766553
No 38
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=96.82 E-value=0.0025 Score=70.93 Aligned_cols=100 Identities=17% Similarity=0.213 Sum_probs=59.3
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHh
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQ 110 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~~ 110 (699)
++.+||.||..+.. ....+.|.+..+.+.-.|+|.|||.||+.+.+.+.+...-++..
T Consensus 357 ~~~nll~Nai~~~~--------------~~~~I~i~~~~~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~-------- 414 (457)
T TIGR01386 357 AISNLLSNALRHTP--------------DGGTITVRIERRSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDP-------- 414 (457)
T ss_pred HHHHHHHHHHHcCC--------------CCceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhccccccCCc--------
Confidence 57777777776642 11234555544444457999999999999988865443222211
Q ss_pred cCCCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccCceEEEEeCCCCCCCCCceEEEEEe
Q 005370 111 AGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYL 178 (699)
Q Consensus 111 ~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~~~~~i~~~~~~~~~~~GT~I~L~l 178 (699)
.....-+..|+|++-+--++++. +|.+.+.. .+.||+|++.+
T Consensus 415 --~~~~~~~g~GlGL~i~~~~~~~~------------------~G~~~~~~------~~~G~~~~~~~ 456 (457)
T TIGR01386 415 --ARSNSGEGTGLGLAIVRSIMEAH------------------GGRASAES------PDGKTRFILRF 456 (457)
T ss_pred --ccCCCCCCccccHHHHHHHHHHC------------------CCEEEEEe------CCCceEEEEec
Confidence 00112356899998765554321 24455543 25788888765
No 39
>PRK10364 sensor protein ZraS; Provisional
Probab=96.80 E-value=0.0029 Score=71.34 Aligned_cols=73 Identities=18% Similarity=0.206 Sum_probs=47.6
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHh
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQ 110 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~~ 110 (699)
.+..||.||++|+.. ...+.|.+..+.+.-.|+|.|||.||+.+.+.+.|. -+.+++
T Consensus 352 il~NLl~NA~k~~~~--------------~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~-~~~~~k-------- 408 (457)
T PRK10364 352 VLLNLYLNAIQAIGQ--------------HGVISVTASESGAGVKISVTDSGKGIAADQLEAIFT-PYFTTK-------- 408 (457)
T ss_pred HHHHHHHHHHHhcCC--------------CCeEEEEEEEeCCeEEEEEEECCCCCCHHHHHHHhC-ccccCC--------
Confidence 577888899998642 123455555555556799999999999998875432 222211
Q ss_pred cCCCCCccccccchhhheeeecC
Q 005370 111 AGADVSMIGQFGVGFYSAYLVAE 133 (699)
Q Consensus 111 ~~~~~~~iG~FGIGf~S~F~vad 133 (699)
-+..|+|++-+-.++.
T Consensus 409 -------~~g~GlGL~iv~~~v~ 424 (457)
T PRK10364 409 -------AEGTGLGLAVVHNIVE 424 (457)
T ss_pred -------CCCCcccHHHHHHHHH
Confidence 1246999987655543
No 40
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=96.78 E-value=0.0034 Score=72.14 Aligned_cols=162 Identities=17% Similarity=0.173 Sum_probs=99.3
Q ss_pred chHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHH--------HHHHHhhhhc
Q 005370 28 KEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKAD--------LVNNLGTIAR 99 (699)
Q Consensus 28 ~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~e--------l~~~l~~Ia~ 99 (699)
....+.|.|.||+|-.-. + .--.|.|.++ .++.|+|.|||-||+-+. ++-.| ++..
T Consensus 37 LhHlv~EVvDNsiDEala------------G--~~~~I~V~l~-~d~sisV~DnGRGIPvdiH~~~~~~~vEvI~-T~LH 100 (635)
T COG0187 37 LHHLVWEVVDNSIDEALA------------G--YADRIDVTLH-EDGSISVEDNGRGIPVDIHPKEKVSAVEVIF-TVLH 100 (635)
T ss_pred ceeeEeEeeechHhHHhh------------C--cCcEEEEEEc-CCCeEEEEECCCCCccccCCCCCCCceEEEE-Eeec
Confidence 356788999999996431 1 2236777776 678999999999998654 22122 2222
Q ss_pred cCchhHHHHHhcCCCCCccccccchhhheeeecCeEEEEEecCCCceE--EEEEccCceEEEEeCCCCCCCCCceEEEEE
Q 005370 100 SGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQY--IWESQAGGSFTVTRDVSGEPLGRGTKMTLY 177 (699)
Q Consensus 100 S~~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~--~w~~~~~~~~~i~~~~~~~~~~~GT~I~L~ 177 (699)
.|.+ | ..+.-.-.=|.-|||.--|=.++++++|.++..+ .-| .|+ .|...-.+...........||+|+.+
T Consensus 101 AGGK-F----d~~~YkvSGGLHGVG~SVVNALS~~l~v~v~r~g-k~y~q~f~-~G~~~~~l~~ig~~~~~~~GT~V~F~ 173 (635)
T COG0187 101 AGGK-F----DNDSYKVSGGLHGVGVSVVNALSTWLEVEVKRDG-KIYRQRFE-RGVPVTPLEVIGSTDTKKTGTKVRFK 173 (635)
T ss_pred cCcc-c----CCCccEeecCCCccceEEEecccceEEEEEEECC-EEEEEEEe-CCCcCCCceecccCCCCCCccEEEEE
Confidence 2221 1 0000012348999999888999999999997653 222 222 12111112221112345789999988
Q ss_pred eccchh--hcccHHHHHHHHHHhcCCCc-cceEeeccc
Q 005370 178 LKEDQL--EYLEERRIKDLVKKHSEFIS-YPIYLWTEK 212 (699)
Q Consensus 178 lk~~~~--~~~~~~~l~~ii~~ys~fl~-~pI~~~~~~ 212 (699)
..+... .-++...|++-++.++=..+ .-|.++++.
T Consensus 174 PD~~iF~~~~f~~~~l~~RlrelA~L~~gl~I~l~d~r 211 (635)
T COG0187 174 PDPEIFGETEFDYEILKRRLRELAFLNKGVKITLTDER 211 (635)
T ss_pred cChHhcCCcccCHHHHHHHHHHHhccCCCCEEEEEecc
Confidence 665421 22477889999998877665 788887643
No 41
>PLN03237 DNA topoisomerase 2; Provisional
Probab=96.73 E-value=0.0072 Score=75.76 Aligned_cols=161 Identities=16% Similarity=0.253 Sum_probs=95.2
Q ss_pred HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHH-------H-HHhhhhccC
Q 005370 30 IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLV-------N-NLGTIARSG 101 (699)
Q Consensus 30 i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~-------~-~l~~Ia~S~ 101 (699)
-.+.|+|-||+|-... ++ ..-.|.|.++.+++.|+|.|||-||.-+--. . .|+++-.||
T Consensus 80 kifdEIldNAvDe~~r-------~g------~~~~I~V~I~~~~gsIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGg 146 (1465)
T PLN03237 80 KIFDEILVNAADNKQR-------DP------KMDSLRVVIDVEQNLISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSS 146 (1465)
T ss_pred hhHHHHhhhhHhHHhh-------cC------CCCEEEEEEEcCCCEEEEEecCccccCCCCCCCCCccceEEEEeeeccc
Confidence 4688999999997531 11 2346777777778899999999999864211 1 123333333
Q ss_pred chhHHHHHhcCCCCCccccccchhhheeeecCeEEEEEecC-CCceE--EEEEccCc--eEEEEeCCCCCCCCCceEEEE
Q 005370 102 TKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHN-DDEQY--IWESQAGG--SFTVTRDVSGEPLGRGTKMTL 176 (699)
Q Consensus 102 ~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~-~~~~~--~w~~~~~~--~~~i~~~~~~~~~~~GT~I~L 176 (699)
+ | ..+...-.-|+-|+|...+=.++.+++|+++.+ ....| .|+.+.+. .-.+.. ......||+|+.
T Consensus 147 k--F----dd~~yKvSGGlhGVGasvvNaLS~~f~Vev~Dg~~gk~y~Q~f~~nmG~~~~p~i~~---~~~~~~GT~VtF 217 (1465)
T PLN03237 147 N--Y----DDNEKKTTGGRNGYGAKLTNIFSTEFVIETADGKRQKKYKQVFSNNMGKKSEPVITK---CKKSENWTKVTF 217 (1465)
T ss_pred c--C----CCCcceeeccccccCccccccccCeeEEEEEECCCCeEEEEEEeCCCCccCCceecc---CCCCCCceEEEE
Confidence 2 2 111112346999999999999999999999732 12233 45532111 111211 122369999988
Q ss_pred Eeccchh--hcccHHHHHHHHHH---hcCCC--ccceEeeccc
Q 005370 177 YLKEDQL--EYLEERRIKDLVKK---HSEFI--SYPIYLWTEK 212 (699)
Q Consensus 177 ~lk~~~~--~~~~~~~l~~ii~~---ys~fl--~~pI~~~~~~ 212 (699)
....... .-++.+.|..+.++ .+.|+ ..-|+++++.
T Consensus 218 ~PD~eiF~~~~fd~D~l~~~~rRlrdLAa~LnkGlkI~LndeR 260 (1465)
T PLN03237 218 KPDLAKFNMTHLEDDVVALMKKRVVDIAGCLGKTVKVELNGKR 260 (1465)
T ss_pred EECHHHhCCceEcHHHHHHHHHHHHHHHhccCCCcEEEEEecC
Confidence 8654321 12366666554333 34566 3677787653
No 42
>PRK10815 sensor protein PhoQ; Provisional
Probab=96.70 E-value=0.0034 Score=71.93 Aligned_cols=97 Identities=13% Similarity=0.190 Sum_probs=59.4
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHh
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQ 110 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~~ 110 (699)
++.-||.||+.++. ..+.|.+..+.+.-.|+|.|||.||+.+++...+.. ...+
T Consensus 382 vl~NLi~NAik~~~----------------~~i~I~~~~~~~~v~I~V~D~G~GI~~e~~~~iF~~-f~~~--------- 435 (485)
T PRK10815 382 VMGNVLDNACKYCL----------------EFVEISARQTDEHLHIVVEDDGPGIPESKRELIFDR-GQRA--------- 435 (485)
T ss_pred HHHHHHHHHHHhcC----------------CcEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCC-cccC---------
Confidence 67778888877763 124555555444456999999999999998754321 1111
Q ss_pred cCCCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccCceEEEEeCCCCCCCCCceEEEEEecc
Q 005370 111 AGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKE 180 (699)
Q Consensus 111 ~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~~~~~i~~~~~~~~~~~GT~I~L~lk~ 180 (699)
+ ..-+..|+|++-|--+++. . +|.+.+... .+.||++++.++.
T Consensus 436 ---~-~~~~G~GLGL~Ivk~iv~~------~------------gG~i~v~s~-----~~~Gt~f~i~lp~ 478 (485)
T PRK10815 436 ---D-TLRPGQGLGLSVAREITEQ------Y------------EGKISAGDS-----PLGGARMEVIFGR 478 (485)
T ss_pred ---C-CCCCCcchhHHHHHHHHHH------c------------CCEEEEEEC-----CCCEEEEEEEEcC
Confidence 0 1113579999877665442 1 234445431 2578888888764
No 43
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=96.62 E-value=0.0058 Score=70.35 Aligned_cols=103 Identities=17% Similarity=0.282 Sum_probs=61.6
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHh
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQ 110 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~~ 110 (699)
.+.+||.||++|+.+. + .....+.|.+..+.+.-.|.|.|||.||+.++..+.|. -+.+++.
T Consensus 436 vl~nLl~NAi~~~~~~-------~---~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~-~~~~tk~------- 497 (545)
T PRK15053 436 IVGNLLDNAFEASLRS-------D---EGNKIVELFLSDEGDDVVIEVADQGCGVPESLRDKIFE-QGVSTRA------- 497 (545)
T ss_pred HHHHHHHHHHHHHhhC-------C---CCCceEEEEEEECCCEEEEEEEeCCCCcCHHHHHHHhC-CCCCCCC-------
Confidence 5889999999998531 0 01122344444443345689999999999998885443 2333211
Q ss_pred cCCCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccCceEEEEeCCCCCCCCCceEEEEEec
Q 005370 111 AGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLK 179 (699)
Q Consensus 111 ~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~~~~~i~~~~~~~~~~~GT~I~L~lk 179 (699)
. --|..|+|++.+-.+++. . +|.+.+... .+.||++++.+.
T Consensus 498 ----~-~~~g~GlGL~ivk~iv~~------~------------~G~i~v~s~-----~~~Gt~f~i~lP 538 (545)
T PRK15053 498 ----D-EPGEHGIGLYLIASYVTR------C------------GGVITLEDN-----DPCGTLFSIFIP 538 (545)
T ss_pred ----C-CCCCceeCHHHHHHHHHH------c------------CCEEEEEEC-----CCCeEEEEEEEC
Confidence 1 124569999887666432 1 233344331 357888888765
No 44
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=96.60 E-value=0.0037 Score=76.60 Aligned_cols=97 Identities=21% Similarity=0.310 Sum_probs=58.5
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHh
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQ 110 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~~ 110 (699)
+|..||+||+.+.. ...+.|++..+.+.-.|+|+|||+||+.+++.+.+... ..+
T Consensus 517 il~NLl~NAik~~~---------------~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f-~~~--------- 571 (921)
T PRK15347 517 ILVNLLGNAVKFTE---------------TGGIRLRVKRHEQQLCFTVEDTGCGIDIQQQQQIFTPF-YQA--------- 571 (921)
T ss_pred HHHHHHHHHhhcCC---------------CCCEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhcCc-ccC---------
Confidence 67788888887742 12345555555444568999999999999987544211 111
Q ss_pred cCCCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccCceEEEEeCCCCCCCCCceEEEEEec
Q 005370 111 AGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLK 179 (699)
Q Consensus 111 ~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~~~~~i~~~~~~~~~~~GT~I~L~lk 179 (699)
+ ...|..|+|+.-|-.++... +|.+.+... .+.||++++.+.
T Consensus 572 ---~-~~~~g~GLGL~i~~~~~~~~------------------gG~i~i~s~-----~~~Gt~f~i~lp 613 (921)
T PRK15347 572 ---D-THSQGTGLGLTIASSLAKMM------------------GGELTLFST-----PGVGSCFSLVLP 613 (921)
T ss_pred ---C-CCCCCCchHHHHHHHHHHHc------------------CCEEEEEec-----CCCceEEEEEEE
Confidence 1 12356899997665443321 123444331 357888888765
No 45
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=96.57 E-value=0.0061 Score=68.21 Aligned_cols=79 Identities=14% Similarity=0.146 Sum_probs=48.7
Q ss_pred HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005370 30 IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL 109 (699)
Q Consensus 30 i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~ 109 (699)
.++..|++||+.+... ...+.|.+..+.+.-.|+|.|||.||+.+++.+.+-. .....+
T Consensus 320 ~vl~NLl~NAik~~~~--------------~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~-f~~~~~------ 378 (430)
T PRK11006 320 SAISNLVYNAVNHTPE--------------GTHITVRWQRVPQGAEFSVEDNGPGIAPEHIPRLTER-FYRVDK------ 378 (430)
T ss_pred HHHHHHHHHHHhcCCC--------------CCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHhccC-cccccC------
Confidence 4678899999888531 1234444444444557999999999999988854322 111110
Q ss_pred hcCCCCCccccccchhhheeeec
Q 005370 110 QAGADVSMIGQFGVGFYSAYLVA 132 (699)
Q Consensus 110 ~~~~~~~~iG~FGIGf~S~F~va 132 (699)
......|..|+|++-|-.++
T Consensus 379 ---~~~~~~~G~GLGL~ivk~iv 398 (430)
T PRK11006 379 ---ARSRQTGGSGLGLAIVKHAL 398 (430)
T ss_pred ---CCCCCCCCCchHHHHHHHHH
Confidence 01122356799998776554
No 46
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=96.54 E-value=0.0045 Score=75.92 Aligned_cols=81 Identities=21% Similarity=0.283 Sum_probs=50.7
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHh
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQ 110 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~~ 110 (699)
++..||.||+.+.. .+.+.|.+..+...-.|.|.|||+||+.+++.+.|...- ..
T Consensus 565 il~NLl~NAik~~~---------------~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~-~~--------- 619 (914)
T PRK11466 565 VITNLLSNALRFTD---------------EGSIVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFV-QV--------- 619 (914)
T ss_pred HHHHHHHHHHHhCC---------------CCeEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHhchhh-cC---------
Confidence 67788888888743 123455554454445699999999999999885443211 10
Q ss_pred cCCCCCccccccchhhheeeec----CeEEEEEe
Q 005370 111 AGADVSMIGQFGVGFYSAYLVA----ERVVVTTK 140 (699)
Q Consensus 111 ~~~~~~~iG~FGIGf~S~F~va----d~v~V~T~ 140 (699)
....|..|+|+.-|-.++ -++.|.|.
T Consensus 620 ----~~~~~g~GLGL~i~~~l~~~~gG~i~v~s~ 649 (914)
T PRK11466 620 ----SGKRGGTGLGLTISSRLAQAMGGELSATST 649 (914)
T ss_pred ----CCCCCCCcccHHHHHHHHHHcCCEEEEEec
Confidence 012367899998765543 34555554
No 47
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=96.52 E-value=0.011 Score=74.38 Aligned_cols=164 Identities=17% Similarity=0.272 Sum_probs=94.6
Q ss_pred hHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHH--------HHHhhhhcc
Q 005370 29 EIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLV--------NNLGTIARS 100 (699)
Q Consensus 29 ~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~--------~~l~~Ia~S 100 (699)
.-.+.|+|-||+|-... ++ .....-.|.|.++.+.+.|+|.|||-||+-+--. -.|+++-.|
T Consensus 59 ~ki~dEIldNAvDe~~r-------~~---~~g~~~~I~V~i~~d~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aG 128 (1388)
T PTZ00108 59 YKIFDEILVNAADNKAR-------DK---GGHRMTYIKVTIDEENGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTS 128 (1388)
T ss_pred hhhHHHHhhhhhhhhcc-------cC---CCCCccEEEEEEeccCCeEEEEecCCcccCCCCCCCCCccceEEEEEeecc
Confidence 35788999999997531 10 0112347888888777899999999999864211 123333333
Q ss_pred CchhHHHHHhcCCCCCccccccchhhheeeecCeEEEEEecCC-Cce--EEEEEcc-C-ceEEEEeCCCCCCCCCceEEE
Q 005370 101 GTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHND-DEQ--YIWESQA-G-GSFTVTRDVSGEPLGRGTKMT 175 (699)
Q Consensus 101 ~~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~-~~~--~~w~~~~-~-~~~~i~~~~~~~~~~~GT~I~ 175 (699)
|+ | ..+...-.-|+-|+|...+=.++.+++|++..+. +.. ..|+... . ..-.|.. ......||+|+
T Consensus 129 gk--f----dd~~yKvSGGlhGVGasvvNalS~~f~Vev~r~~~gk~y~q~f~~Gm~~~~~p~i~~---~~~~~~GT~Vt 199 (1388)
T PTZ00108 129 SN--Y----DDTEKRVTGGRNGFGAKLTNIFSTKFTVECVDSKSGKKFKMTWTDNMSKKSEPRITS---YDGKKDYTKVT 199 (1388)
T ss_pred cc--C----CCCceeeecccccCCccccccccceEEEEEEECCCCCEEEEEecCCCcCCCCCccCC---CCCCCCceEEE
Confidence 32 1 1111123569999999999999999999998651 222 3454321 0 1112211 01116899999
Q ss_pred EEeccchh--hcccHHH---HHHHHHHhcCCCc-cceEeecc
Q 005370 176 LYLKEDQL--EYLEERR---IKDLVKKHSEFIS-YPIYLWTE 211 (699)
Q Consensus 176 L~lk~~~~--~~~~~~~---l~~ii~~ys~fl~-~pI~~~~~ 211 (699)
........ .-++.+. |..-++..+-..+ .-|+++++
T Consensus 200 F~PD~~iF~~~~fd~d~~~ll~~Rl~dlA~ln~GLkI~lnde 241 (1388)
T PTZ00108 200 FYPDYAKFGMTEFDDDMLRLLKKRVYDLAGCFGKLKVYLNGE 241 (1388)
T ss_pred EEeCHHHcCCCccChHHHHHHHHHHHHHhcCCCCcEEEEeCc
Confidence 88655321 1234454 5555555554443 56666654
No 48
>PLN03128 DNA topoisomerase 2; Provisional
Probab=96.47 E-value=0.012 Score=73.24 Aligned_cols=160 Identities=17% Similarity=0.205 Sum_probs=90.3
Q ss_pred HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHH--------HHHhhhhccC
Q 005370 30 IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLV--------NNLGTIARSG 101 (699)
Q Consensus 30 i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~--------~~l~~Ia~S~ 101 (699)
-.+.|+|-||+|-... ++ ..-.|.|.++.+++.|+|.|||-||+-+--. -.|+.+-.||
T Consensus 55 ki~dEIldNAvDe~~~-------~g------~~~~I~V~i~~~dgsIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGg 121 (1135)
T PLN03128 55 KIFDEILVNAADNKQR-------DP------SMDSLKVDIDVEQNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSS 121 (1135)
T ss_pred HHHHHHHHHHHHHhhh-------cC------CCcEEEEEEEcCCCeEEEEecCccccCCCCCCCCCccceEEEEeecccc
Confidence 4788999999997521 11 1237788888777899999999999864211 1122333333
Q ss_pred chhHHHHHhcCCCCCccccccchhhheeeecCeEEEEEecC-CCceE--EEEEcc-Cce-EEEEeCCCCCCCCCceEEEE
Q 005370 102 TKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHN-DDEQY--IWESQA-GGS-FTVTRDVSGEPLGRGTKMTL 176 (699)
Q Consensus 102 ~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~-~~~~~--~w~~~~-~~~-~~i~~~~~~~~~~~GT~I~L 176 (699)
+ |- .+...-.-|.-|+|...+=.++.+++|++..+ ++..| .|+... ... -.+.. .....+||+|+.
T Consensus 122 k--Fd----d~~ykvSGGlhGvGasvvNaLS~~f~Vev~d~r~gk~y~q~f~~G~~~~~~p~i~~---~~~~~~GT~ItF 192 (1135)
T PLN03128 122 N--FD----DNEKKTTGGRNGYGAKLANIFSTEFTVETADGNRGKKYKQVFTNNMSVKSEPKITS---CKASENWTKITF 192 (1135)
T ss_pred c--cC----CccceeeccccCCCCeEEEeecCeEEEEEEECCCCeEEEEEeCCCcccCCCceecc---CCCCCCceEEEE
Confidence 2 21 11112346999999999999999999999732 22222 343211 001 01111 112359999998
Q ss_pred Eeccchh--hcccHHHH---HHHHHHhcCCC--ccceEeecc
Q 005370 177 YLKEDQL--EYLEERRI---KDLVKKHSEFI--SYPIYLWTE 211 (699)
Q Consensus 177 ~lk~~~~--~~~~~~~l---~~ii~~ys~fl--~~pI~~~~~ 211 (699)
....... .-++.+.+ ..-++..+.|+ ..-|+++++
T Consensus 193 ~PD~~iF~~~~fd~d~~~~l~kRl~elAa~Ln~GlkI~Lnde 234 (1135)
T PLN03128 193 KPDLAKFNMTRLDEDVVALMSKRVYDIAGCLGKKLKVELNGK 234 (1135)
T ss_pred EECHHHcCCCccChHHHHHHHHHHHHHHHhCCCCcEEEEecC
Confidence 8654321 11344433 33333345555 356666654
No 49
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=96.46 E-value=0.0084 Score=67.04 Aligned_cols=75 Identities=17% Similarity=0.182 Sum_probs=47.8
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHh
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQ 110 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~~ 110 (699)
++++||+||+.+.. ..+.|.+..+.+.-.|+|.|||+||+.+++.+.+... .++..
T Consensus 357 ~l~nli~NA~~~~~----------------~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~-~~~~~------- 412 (461)
T PRK09470 357 ALENIVRNALRYSH----------------TKIEVAFSVDKDGLTITVDDDGPGVPEEEREQIFRPF-YRVDE------- 412 (461)
T ss_pred HHHHHHHHHHHhCC----------------CcEEEEEEEECCEEEEEEEECCCCCCHHHHHHhcCCC-ccCCc-------
Confidence 58888889886632 2356666666555679999999999999887544321 11110
Q ss_pred cCCCCCccccccchhhheeee
Q 005370 111 AGADVSMIGQFGVGFYSAYLV 131 (699)
Q Consensus 111 ~~~~~~~iG~FGIGf~S~F~v 131 (699)
.....-|.+|+|++-+=.+
T Consensus 413 --~~~~~~~g~GlGL~iv~~~ 431 (461)
T PRK09470 413 --ARDRESGGTGLGLAIVENA 431 (461)
T ss_pred --ccCCCCCCcchhHHHHHHH
Confidence 1112346789999765443
No 50
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=96.39 E-value=0.0088 Score=73.80 Aligned_cols=74 Identities=15% Similarity=0.290 Sum_probs=49.5
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCC-CEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKAN-KTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL 109 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~-~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~ 109 (699)
++..||.||+.+.. .+.+.|.+....+. -.|.|.|||+||+.+++.+.|....+.
T Consensus 583 il~nLi~NAik~~~---------------~g~i~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~--------- 638 (968)
T TIGR02956 583 VLINLVGNAIKFTD---------------RGSVVLRVSLNDDSSLLFEVEDTGCGIAEEEQATLFDAFTQA--------- 638 (968)
T ss_pred HHHHHHHHHHhhCC---------------CCeEEEEEEEcCCCeEEEEEEeCCCCCCHHHHHHHHhhhhcc---------
Confidence 78899999998753 12356666665555 679999999999999988554322111
Q ss_pred hcCCCCCccccccchhhheeee
Q 005370 110 QAGADVSMIGQFGVGFYSAYLV 131 (699)
Q Consensus 110 ~~~~~~~~iG~FGIGf~S~F~v 131 (699)
......|..|+|++-|-.+
T Consensus 639 ---~~~~~~~g~GLGL~i~~~l 657 (968)
T TIGR02956 639 ---DGRRRSGGTGLGLAISQRL 657 (968)
T ss_pred ---CCCCCCCCccHHHHHHHHH
Confidence 1112336789999866554
No 51
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=96.38 E-value=0.0079 Score=68.92 Aligned_cols=49 Identities=20% Similarity=0.281 Sum_probs=34.0
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCC-CEEEEEeCCCCCCHHHHHHH
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKAN-KTLTIVDSGIGMTKADLVNN 93 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~-~~l~I~DnGiGMt~~el~~~ 93 (699)
++.+||.||+.+... ...+.|.+..+.+. -.|.|+|||+||+.+.+...
T Consensus 504 ~~~nli~na~~~~~~--------------~~~i~v~~~~~~~~~~~i~v~D~G~G~~~~~~~~~ 553 (607)
T PRK11360 504 VLLNILINAVQAISA--------------RGKIRIRTWQYSDGQVAVSIEDNGCGIDPELLKKI 553 (607)
T ss_pred HHHHHHHHHHHHhcC--------------CCeEEEEEEEcCCCEEEEEEEeCCCCCCHHHHhhh
Confidence 577888888877531 12344555444444 67999999999999988743
No 52
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=96.29 E-value=0.0092 Score=66.42 Aligned_cols=60 Identities=12% Similarity=0.144 Sum_probs=36.1
Q ss_pred CceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHhcCCCCCccccccchhhheeeecC
Q 005370 62 ELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAE 133 (699)
Q Consensus 62 ~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad 133 (699)
.+.|.+..+.+.-.|+|.|||.||+.+++...+... ..+. ... .-+.+|+|+.-|-.+++
T Consensus 350 ~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~~~f-~~~~----------~~~-~~~g~GlGL~iv~~i~~ 409 (435)
T PRK09467 350 WIKVSSGTEGKRAWFQVEDDGPGIPPEQLKHLFQPF-TRGD----------SAR-GSSGTGLGLAIVKRIVD 409 (435)
T ss_pred eEEEEEEecCCEEEEEEEecCCCcCHHHHHHhcCCc-ccCC----------CCC-CCCCeehhHHHHHHHHH
Confidence 345555555444569999999999999987544321 1110 011 12568999977655543
No 53
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=96.26 E-value=0.017 Score=67.76 Aligned_cols=159 Identities=19% Similarity=0.202 Sum_probs=89.8
Q ss_pred HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHH----------HHhhhhc
Q 005370 30 IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVN----------NLGTIAR 99 (699)
Q Consensus 30 i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~----------~l~~Ia~ 99 (699)
..+.|+|-||+|-... ++. ...-.|.|.++ ++.|+|.|||-||+-+--.. .+.++..
T Consensus 48 hi~~EIldNavDe~~~-------~~~----g~~~~I~V~i~--dgsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~Lh 114 (602)
T PHA02569 48 KIIDEIIDNSVDEAIR-------TNF----KFANKIDVTIK--NNQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTK 114 (602)
T ss_pred eeeehhhhhhhhhhhc-------cCC----CCCcEEEEEEc--CCEEEEEECCCcccCCcccccccccccceEEEEEeec
Confidence 3567999999996421 110 11236777776 67899999999998643211 0112223
Q ss_pred cCchhHHHHHhcCCCCCccccccchhhheeeecCeEEEEEecCCCc-eEEEEEccCceEEEEeCCCCCCCCCceEEEEEe
Q 005370 100 SGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDE-QYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYL 178 (699)
Q Consensus 100 S~~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~-~~~w~~~~~~~~~i~~~~~~~~~~~GT~I~L~l 178 (699)
+|.+ | + +.-.-.-|.-|+|.-.+=+++.+++|+++.++.. ...|.. |. ...+...+....+||+|+...
T Consensus 115 aGgk-F-d----~~ykvSGGlhGVG~svvNaLS~~~~V~v~~~~~~~~q~f~~---G~-~~~~~~~~~~~~~GT~V~F~P 184 (602)
T PHA02569 115 AGSN-F-D----DTNRVTGGMNGVGSSLTNFFSVLFIGETCDGKNEVTVNCSN---GA-ENISWSTKPGKGKGTSVTFIP 184 (602)
T ss_pred cccc-c-C----CcceeeCCcCCccceeeeccchhhheEEEcCCEEEEEEecC---Cc-ccCCcccCCCCCCccEEEEEE
Confidence 3322 2 1 1112246999999988889999999988543321 223321 21 111111123457999999887
Q ss_pred ccchhhc--cc---HHHHHHHHHHhcCCC-ccceEeecc
Q 005370 179 KEDQLEY--LE---ERRIKDLVKKHSEFI-SYPIYLWTE 211 (699)
Q Consensus 179 k~~~~~~--~~---~~~l~~ii~~ys~fl-~~pI~~~~~ 211 (699)
......- ++ .+.|.+-++..+-.. ..-|.++++
T Consensus 185 D~~iF~~~~~~~~~~~~l~~Rl~elA~Ln~Gl~I~l~de 223 (602)
T PHA02569 185 DFSHFEVNGLDQQYLDIILDRLQTLAVVFPDIKFTFNGK 223 (602)
T ss_pred CHHHhCCCccCccHHHHHHHHHHHHhcCCCCCEEEEEec
Confidence 6543210 22 355666666665333 366777653
No 54
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=96.23 E-value=0.011 Score=70.89 Aligned_cols=80 Identities=16% Similarity=0.236 Sum_probs=49.4
Q ss_pred HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005370 30 IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL 109 (699)
Q Consensus 30 i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~ 109 (699)
.++..||.||+.++.. ...+.|.+..+.+.-.|+|.|||.||+.+++.+.+.. ..+++.
T Consensus 600 ~il~NLI~NAik~s~~--------------~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFe~-F~t~~~------ 658 (703)
T TIGR03785 600 QMLDKLVDNAREFSPE--------------DGLIEVGLSQNKSHALLTVSNEGPPLPEDMGEQLFDS-MVSVRD------ 658 (703)
T ss_pred HHHHHHHHHHHHHCCC--------------CCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhCC-CeecCC------
Confidence 3577888888887631 1234555555544556999999999999988854432 222111
Q ss_pred hcCCCCCccccccchhhheeeecC
Q 005370 110 QAGADVSMIGQFGVGFYSAYLVAE 133 (699)
Q Consensus 110 ~~~~~~~~iG~FGIGf~S~F~vad 133 (699)
....--+..|+|++-|-.+++
T Consensus 659 ---~~~~~~~g~GLGL~Ivr~Iv~ 679 (703)
T TIGR03785 659 ---QGAQDQPHLGLGLYIVRLIAD 679 (703)
T ss_pred ---CCCCCCCCccHHHHHHHHHHH
Confidence 011112468999988766644
No 55
>PRK09303 adaptive-response sensory kinase; Validated
Probab=96.23 E-value=0.013 Score=64.83 Aligned_cols=84 Identities=13% Similarity=0.231 Sum_probs=49.5
Q ss_pred CCCCch---HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCC-CCEEEEEeCCCCCCHHHHHHHHhhhhc
Q 005370 24 FYSNKE---IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKA-NKTLTIVDSGIGMTKADLVNNLGTIAR 99 (699)
Q Consensus 24 LYs~~~---i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~l~I~DnGiGMt~~el~~~l~~Ia~ 99 (699)
+|+|+. -++..||.||+.+... ...+.|.+....+ .-.|+|.|||.||+.+++...|... .
T Consensus 266 v~~d~~~l~qvl~NLl~NAik~~~~--------------~~~I~i~~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~pf-~ 330 (380)
T PRK09303 266 VYADQERIRQVLLNLLDNAIKYTPE--------------GGTITLSMLHRTTQKVQVSICDTGPGIPEEEQERIFEDR-V 330 (380)
T ss_pred EEeCHHHHHHHHHHHHHHHHhcCCC--------------CceEEEEEEecCCCEEEEEEEEcCCCCCHHHHHHHccCc-e
Confidence 455542 3678888998877531 1223333333222 2468999999999999887543211 1
Q ss_pred cCchhHHHHHhcCCCCCccccccchhhheeeecC
Q 005370 100 SGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAE 133 (699)
Q Consensus 100 S~~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad 133 (699)
..+ .....+..|+|++-|..++.
T Consensus 331 ~~~-----------~~~~~~G~GLGL~i~~~iv~ 353 (380)
T PRK09303 331 RLP-----------RDEGTEGYGIGLSVCRRIVR 353 (380)
T ss_pred eCC-----------CCCCCCcccccHHHHHHHHH
Confidence 110 11123568999988776643
No 56
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=96.18 E-value=0.013 Score=66.57 Aligned_cols=74 Identities=20% Similarity=0.238 Sum_probs=50.4
Q ss_pred HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEE--cCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHH
Q 005370 30 IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIP--DKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFME 107 (699)
Q Consensus 30 i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~--d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~ 107 (699)
+.|.=||.||.||..+ ..++-+|.+.+ +.+.-.|.|.|||+||+++... .+...|.|++.
T Consensus 430 tIlGNLidNA~eA~~~-------------~~~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~-~iFe~G~Stk~---- 491 (537)
T COG3290 430 TILGNLIDNALEALLA-------------PEENKEIELSLSDRGDELVIEVADTGPGIPPEVRD-KIFEKGVSTKN---- 491 (537)
T ss_pred HHHHHHHHHHHHHhhc-------------cCCCcEEEEEEEecCCEEEEEEeCCCCCCChHHHH-HHHhcCccccC----
Confidence 4677899999999873 01223455554 3333457999999999998877 45556666531
Q ss_pred HHhcCCCCCccccccchhhheeee
Q 005370 108 ALQAGADVSMIGQFGVGFYSAYLV 131 (699)
Q Consensus 108 ~~~~~~~~~~iG~FGIGf~S~F~v 131 (699)
.|..|+|+|-+-..
T Consensus 492 ----------~~~rGiGL~Lvkq~ 505 (537)
T COG3290 492 ----------TGGRGIGLYLVKQL 505 (537)
T ss_pred ----------CCCCchhHHHHHHH
Confidence 47889999866443
No 57
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=96.05 E-value=0.016 Score=61.01 Aligned_cols=78 Identities=19% Similarity=0.221 Sum_probs=46.8
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHh
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQ 110 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~~ 110 (699)
++.+||.||+.+... ...+.|.+....+.-.|.|.|||.||+.+.+...+.. ..+...
T Consensus 233 vl~nll~Nai~~~~~--------------~~~i~i~~~~~~~~~~i~i~d~G~gi~~~~~~~if~~-~~~~~~------- 290 (333)
T TIGR02966 233 AFSNLVSNAIKYTPE--------------GGTITVRWRRDGGGAEFSVTDTGIGIAPEHLPRLTER-FYRVDK------- 290 (333)
T ss_pred HHHHHHHHhheeCCC--------------CCeEEEEEEEcCCEEEEEEEecCCCCCHHHHhhhccC-ceecCc-------
Confidence 688999998877431 1234444444444456999999999999988754322 111110
Q ss_pred cCCCCCccccccchhhheeeec
Q 005370 111 AGADVSMIGQFGVGFYSAYLVA 132 (699)
Q Consensus 111 ~~~~~~~iG~FGIGf~S~F~va 132 (699)
......+..|+|++.|-.++
T Consensus 291 --~~~~~~~g~glGL~~~~~~~ 310 (333)
T TIGR02966 291 --SRSRDTGGTGLGLAIVKHVL 310 (333)
T ss_pred --ccccCCCCCcccHHHHHHHH
Confidence 00112245699998876654
No 58
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=95.97 E-value=0.011 Score=71.14 Aligned_cols=162 Identities=21% Similarity=0.230 Sum_probs=92.4
Q ss_pred HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHH-------HHHhhhhccCc
Q 005370 30 IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLV-------NNLGTIARSGT 102 (699)
Q Consensus 30 i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~-------~~l~~Ia~S~~ 102 (699)
..+.|+|.||+|-... . ..-.|.|.++. ++.|+|.|||-||+-+.-. ....++..+|.
T Consensus 132 hLv~EIlDNSVDE~la-G-------------~~~~I~V~i~~-DgsItV~DnGRGIPvd~h~k~g~s~~E~VlT~LhAGG 196 (903)
T PTZ00109 132 QLLFEILDNSVDEYLA-G-------------ECNKITVVLHK-DGSVEISDNGRGIPCDVSEKTGKSGLETVLTVLHSGG 196 (903)
T ss_pred EEEEEEeeccchhhcc-C-------------CCcEEEEEEcC-CCeEEEEeCCccccccccccCCCcceeEEEEEeccCc
Confidence 3678999999995321 1 12367777765 4789999999999864321 11223334442
Q ss_pred hhHHHHH-----------------------------h-----cC-CC-CCccccccchhhheeeecCeEEEEEecCCCce
Q 005370 103 KEFMEAL-----------------------------Q-----AG-AD-VSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQ 146 (699)
Q Consensus 103 ~~f~~~~-----------------------------~-----~~-~~-~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~ 146 (699)
+ |-... + .. .. .-.-|.-|||.-.+=.++..++|.++..+. .
T Consensus 197 K-F~~~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSGGLHGVG~SVVNALS~~l~VeV~RdGK-~ 274 (903)
T PTZ00109 197 K-FQDTFPKNSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSSGLHGVGLSVVNALSSFLKVDVFKGGK-I 274 (903)
T ss_pred c-ccCcccccccccccccccccccccccccccccccccccccccCCcceecCcCCCcceeeeeeccCeEEEEEEECCE-E
Confidence 2 21100 0 00 00 124689999998888999999999976532 2
Q ss_pred EEEEEccCceEEEEeC-CCCCC-CCCceEEEEEec-cchh-h-c--------------ccHHHHHHHHHHhcCCC-ccce
Q 005370 147 YIWESQAGGSFTVTRD-VSGEP-LGRGTKMTLYLK-EDQL-E-Y--------------LEERRIKDLVKKHSEFI-SYPI 206 (699)
Q Consensus 147 ~~w~~~~~~~~~i~~~-~~~~~-~~~GT~I~L~lk-~~~~-~-~--------------~~~~~l~~ii~~ys~fl-~~pI 206 (699)
|.-+... |. .+.+. ..+.. ..+||+|+.... +.-. . . ++.+.|++-++.++-.. ..-|
T Consensus 275 y~q~F~r-G~-~v~pLkvig~~~~~tGT~VtF~PD~~~IF~~~~~~~~~~~~~~~~~~F~~d~L~~RLrElAfLNpGL~I 352 (903)
T PTZ00109 275 YSIELSK-GK-VTKPLSVFSCPLKKRGTTIHFLPDYKHIFKTHHQHTETEEEEGCKNGFNLDLIKNRIHELSYLNPGLTF 352 (903)
T ss_pred EEEEeCC-Cc-ccCCccccCCcCCCCceEEEEEeCcchhcCccccccccccccccccccCHHHHHHHHHHHhccCCCcEE
Confidence 2222221 21 11111 01122 469999998876 5421 1 1 35677888888877444 3566
Q ss_pred Eeec
Q 005370 207 YLWT 210 (699)
Q Consensus 207 ~~~~ 210 (699)
.+++
T Consensus 353 ~L~D 356 (903)
T PTZ00109 353 YLVD 356 (903)
T ss_pred EEEe
Confidence 6664
No 59
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=95.90 E-value=0.026 Score=52.89 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=29.8
Q ss_pred HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCC
Q 005370 30 IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMT 86 (699)
Q Consensus 30 i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt 86 (699)
.++.||++||+.+. +. + .....+.|.+....+.-.|+|.|+|.||+
T Consensus 42 ~~l~eli~Nai~h~----~~----~---~~~~~I~v~~~~~~~~~~i~I~D~G~gi~ 87 (137)
T TIGR01925 42 TAVSEAVTNAIIHG----YE----E---NCEGVVYISATIEDHEVYITVRDEGIGIE 87 (137)
T ss_pred HHHHHHHHHHHHhc----cC----C---CCCcEEEEEEEEeCCEEEEEEEEcCCCcC
Confidence 57899999988542 10 0 11223455555544455689999999997
No 60
>PRK10337 sensor protein QseC; Provisional
Probab=95.87 E-value=0.019 Score=64.21 Aligned_cols=72 Identities=18% Similarity=0.237 Sum_probs=44.6
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHh
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQ 110 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~~ 110 (699)
+++.||.||+.+... ...|.|.... ..|+|.|||.||+.+++...+-..-+.
T Consensus 356 vl~Nli~NA~k~~~~----------------~~~i~i~~~~--~~i~i~D~G~Gi~~~~~~~if~~f~~~---------- 407 (449)
T PRK10337 356 LVRNLLDNAIRYSPQ----------------GSVVDVTLNA--RNFTVRDNGPGVTPEALARIGERFYRP---------- 407 (449)
T ss_pred HHHHHHHHHHhhCCC----------------CCeEEEEEEe--eEEEEEECCCCCCHHHHHHhcccccCC----------
Confidence 678888888777431 1234444432 379999999999999988544322111
Q ss_pred cCCCCCccccccchhhheeeecC
Q 005370 111 AGADVSMIGQFGVGFYSAYLVAE 133 (699)
Q Consensus 111 ~~~~~~~iG~FGIGf~S~F~vad 133 (699)
+..-.+..|+|+.-|-.+++
T Consensus 408 ---~~~~~~g~GlGL~iv~~i~~ 427 (449)
T PRK10337 408 ---PGQEATGSGLGLSIVRRIAK 427 (449)
T ss_pred ---CCCCCCccchHHHHHHHHHH
Confidence 11122468999977655543
No 61
>PRK09835 sensor kinase CusS; Provisional
Probab=95.77 E-value=0.023 Score=64.06 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=34.3
Q ss_pred HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHH
Q 005370 30 IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNL 94 (699)
Q Consensus 30 i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l 94 (699)
.+++.||.||+.+.. +...+.|++..+.+.-.|+|.|||.||+.+++...+
T Consensus 378 ~vl~nll~Na~~~~~--------------~~~~I~i~~~~~~~~~~i~v~d~G~gi~~~~~~~if 428 (482)
T PRK09835 378 RAISNLLSNALRYTP--------------AGEAITVRCQEVDHQVQLVVENPGTPIAPEHLPRLF 428 (482)
T ss_pred HHHHHHHHHHHhcCC--------------CCCeEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHh
Confidence 356777777776642 112345555555445579999999999999888543
No 62
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=95.73 E-value=0.027 Score=69.28 Aligned_cols=85 Identities=15% Similarity=0.214 Sum_probs=49.8
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCC---CCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHH
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKA---NKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFME 107 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~---~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~ 107 (699)
++.-||+||+.+.. .+.+.|.+..... .-.|+|.|||+||+.+++.+-+... .+.+
T Consensus 569 VL~NLL~NAik~t~---------------~G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IFePF-~t~~----- 627 (894)
T PRK10618 569 ILLLLLNYAITTTA---------------YGKITLEVDQDESSPDRLTIRILDTGAGVSIKELDNLHFPF-LNQT----- 627 (894)
T ss_pred HHHHHHHHHHHhCC---------------CCeEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhcCcc-ccCC-----
Confidence 67889999988753 1234444443322 2358999999999999988544322 1111
Q ss_pred HHhcCCCCCccccccchhhheeee----cCeEEEEEec
Q 005370 108 ALQAGADVSMIGQFGVGFYSAYLV----AERVVVTTKH 141 (699)
Q Consensus 108 ~~~~~~~~~~iG~FGIGf~S~F~v----ad~v~V~T~~ 141 (699)
.....-+..|+|+.-|--+ +-++.|.|..
T Consensus 628 -----~~~~~~~GtGLGLaI~k~Lve~~GG~I~v~S~~ 660 (894)
T PRK10618 628 -----QGDRYGKASGLTFFLCNQLCRKLGGHLTIKSRE 660 (894)
T ss_pred -----CCCCCCCCcChhHHHHHHHHHHcCCEEEEEECC
Confidence 0111224578998766544 3455565543
No 63
>PRK03660 anti-sigma F factor; Provisional
Probab=95.71 E-value=0.043 Score=51.87 Aligned_cols=48 Identities=15% Similarity=0.256 Sum_probs=30.9
Q ss_pred hHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCH
Q 005370 29 EIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTK 87 (699)
Q Consensus 29 ~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~ 87 (699)
..++.|++.||+..... . .....+.|.+....+.-.++|.|+|.||+.
T Consensus 41 ~~~l~eli~Nai~h~~~-------~----~~~~~i~i~~~~~~~~l~i~I~D~G~g~~~ 88 (146)
T PRK03660 41 KTAVSEAVTNAIIHGYE-------N----NPDGVVYIEVEIEEEELEITVRDEGKGIED 88 (146)
T ss_pred HHHHHHHHHHHHHHhcC-------C----CCCCEEEEEEEECCCEEEEEEEEccCCCCh
Confidence 35789999998855310 0 011234555555544456899999999984
No 64
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=95.69 E-value=0.032 Score=67.42 Aligned_cols=89 Identities=20% Similarity=0.237 Sum_probs=55.4
Q ss_pred HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEc-CCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHH
Q 005370 30 IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPD-KANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEA 108 (699)
Q Consensus 30 i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d-~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~ 108 (699)
-++..||.||.++.. ...+.|.+... .+.-.|+|.|||+||+.+++.+.|...- ..+.
T Consensus 401 qvl~NLl~NAik~~~---------------~g~v~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~-~~~~----- 459 (779)
T PRK11091 401 QILWNLISNAVKFTQ---------------QGGVTVRVRYEEGDMLTFEVEDSGIGIPEDELDKIFAMYY-QVKD----- 459 (779)
T ss_pred HHHHHHHHHHHHhCC---------------CCcEEEEEEEccCCEEEEEEEecCCCCCHHHHHHHHHHhh-cccC-----
Confidence 367899999988852 12355666554 3335689999999999999885543221 1100
Q ss_pred HhcCCCCCccccccchhhheeee----cCeEEEEEecC
Q 005370 109 LQAGADVSMIGQFGVGFYSAYLV----AERVVVTTKHN 142 (699)
Q Consensus 109 ~~~~~~~~~iG~FGIGf~S~F~v----ad~v~V~T~~~ 142 (699)
.......|.-|+|+..|-.+ +-++.|.|..+
T Consensus 460 ---~~~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~~g 494 (779)
T PRK11091 460 ---SHGGKPATGTGIGLAVSKRLAQAMGGDITVTSEEG 494 (779)
T ss_pred ---CCCCCCCCCcchHHHHHHHHHHHcCCEEEEEecCC
Confidence 01122346779999776554 45666766543
No 65
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=95.58 E-value=0.015 Score=56.57 Aligned_cols=88 Identities=19% Similarity=0.268 Sum_probs=53.8
Q ss_pred hHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHH
Q 005370 29 EIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEA 108 (699)
Q Consensus 29 ~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~ 108 (699)
..++.|++.||+...-+. .....+.|.+....+.-.|.|+|+|.||+.+.+...+.. ....
T Consensus 44 ~lav~Ea~~Nai~Hg~~~-----------~~~~~I~I~~~~~~~~l~i~V~D~G~g~d~~~~~~~~~p---~~~~----- 104 (161)
T PRK04069 44 KIAVSEACTNAVQHAYKE-----------DEVGEIHIRFEIYEDRLEIVVADNGVSFDYETLKSKLGP---YDIS----- 104 (161)
T ss_pred HHHHHHHHHHHHHhccCC-----------CCCCeEEEEEEEECCEEEEEEEECCcCCChHHhccccCC---CCCC-----
Confidence 368999999999987420 012345566655555667999999999997765532210 0000
Q ss_pred HhcCCCCCccccccchhhheeeecCeEEEEE
Q 005370 109 LQAGADVSMIGQFGVGFYSAYLVAERVVVTT 139 (699)
Q Consensus 109 ~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T 139 (699)
.....-..-|+|++-+-.++|++.+.+
T Consensus 105 ----~~~~~~~~~G~GL~li~~l~d~v~~~~ 131 (161)
T PRK04069 105 ----KPIEDLREGGLGLFLIETLMDDVTVYK 131 (161)
T ss_pred ----CcccccCCCceeHHHHHHHHHhEEEEc
Confidence 000111124778877777888887764
No 66
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=95.16 E-value=0.05 Score=66.49 Aligned_cols=81 Identities=22% Similarity=0.246 Sum_probs=51.4
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEc---------------CCCCEEEEEeCCCCCCHHHHHHHHh
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPD---------------KANKTLTIVDSGIGMTKADLVNNLG 95 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d---------------~~~~~l~I~DnGiGMt~~el~~~l~ 95 (699)
++..||.||+.++.. ...+.|.+... .+.-.|.|.|||+||+.+++...|.
T Consensus 564 vl~NLl~NAik~~~~--------------~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe 629 (828)
T PRK13837 564 VLMNLCSNAAQAMDG--------------AGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFE 629 (828)
T ss_pred HHHHHHHHHHHHccc--------------CCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhhC
Confidence 688999999998641 12344554443 1223589999999999998874332
Q ss_pred hhhccCchhHHHHHhcCCCCCccccccchhhheeee----cCeEEEEEec
Q 005370 96 TIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLV----AERVVVTTKH 141 (699)
Q Consensus 96 ~Ia~S~~~~f~~~~~~~~~~~~iG~FGIGf~S~F~v----ad~v~V~T~~ 141 (699)
-..++ + . |..|+|++.|-.+ +-++.|.|..
T Consensus 630 -~F~~~------------~-~--~G~GLGL~i~~~iv~~~gG~i~v~s~~ 663 (828)
T PRK13837 630 -PFFTT------------R-A--GGTGLGLATVHGIVSAHAGYIDVQSTV 663 (828)
T ss_pred -CcccC------------C-C--CCCcchHHHHHHHHHHCCCEEEEEecC
Confidence 11111 1 1 6789999877554 4556666653
No 67
>PRK10490 sensor protein KdpD; Provisional
Probab=95.02 E-value=0.056 Score=66.62 Aligned_cols=77 Identities=19% Similarity=0.202 Sum_probs=47.7
Q ss_pred HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005370 30 IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL 109 (699)
Q Consensus 30 i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~ 109 (699)
-++..||+||+.+... ...+.|.+..+.+.-.|+|.|||.||+.+++.+.|.. ..+++
T Consensus 781 qVL~NLL~NAik~s~~--------------g~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFep-F~~~~------- 838 (895)
T PRK10490 781 RVLINLLENAVKYAGA--------------QAEIGIDAHVEGERLQLDVWDNGPGIPPGQEQLIFDK-FARGN------- 838 (895)
T ss_pred HHHHHHHHHHHHhCCC--------------CCeEEEEEEEeCCEEEEEEEECCCCCCHHHHHHhcCC-CccCC-------
Confidence 3678899998887531 1234555544444456899999999999988754422 22111
Q ss_pred hcCCCCCccccccchhhheeeec
Q 005370 110 QAGADVSMIGQFGVGFYSAYLVA 132 (699)
Q Consensus 110 ~~~~~~~~iG~FGIGf~S~F~va 132 (699)
.....+..|+|++-|-.++
T Consensus 839 ----~~~~~~G~GLGL~Ivk~iv 857 (895)
T PRK10490 839 ----KESAIPGVGLGLAICRAIV 857 (895)
T ss_pred ----CCCCCCCccHHHHHHHHHH
Confidence 1112345789998775553
No 68
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=94.96 E-value=0.035 Score=63.63 Aligned_cols=52 Identities=27% Similarity=0.371 Sum_probs=38.6
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHH
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNL 94 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l 94 (699)
+|-=|||||.||++. ...+.++|+..-+.+.-.|+|+|||.|+..+-+...|
T Consensus 501 VLvNLl~NALDA~~~------------~~~~~i~i~~~~~~~~v~l~VrDnGpGi~~e~~~~lF 552 (603)
T COG4191 501 VLVNLLQNALDAMAG------------QEDRRLSIRAQREGGQVVLTVRDNGPGIAPEALPHLF 552 (603)
T ss_pred HHHHHHHHHHHHhcC------------CCCCeeEEEEEecCCeEEEEEccCCCCCCHHHHHhhc
Confidence 566799999999973 1223455555556666779999999999998877544
No 69
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=94.96 E-value=0.065 Score=65.69 Aligned_cols=87 Identities=14% Similarity=0.226 Sum_probs=51.9
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEc--CCC---CEEEEEeCCCCCCHHHHHHHHhhhhccCchhH
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPD--KAN---KTLTIVDSGIGMTKADLVNNLGTIARSGTKEF 105 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d--~~~---~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f 105 (699)
++..||+||+.+... ..+.|.+... .++ -.|+|.|||+||+++++.+.+-..-+...
T Consensus 412 vl~NLl~NAik~~~~---------------g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~--- 473 (919)
T PRK11107 412 IITNLVGNAIKFTES---------------GNIDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADA--- 473 (919)
T ss_pred HHHHHHHHHhhcCCC---------------CcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCC---
Confidence 678899998877531 2344555432 221 34899999999999998754432211100
Q ss_pred HHHHhcCCCCCccccccchhhheeee----cCeEEEEEecC
Q 005370 106 MEALQAGADVSMIGQFGVGFYSAYLV----AERVVVTTKHN 142 (699)
Q Consensus 106 ~~~~~~~~~~~~iG~FGIGf~S~F~v----ad~v~V~T~~~ 142 (699)
......|..|+|++-|-.+ +-++.|.|..+
T Consensus 474 -------~~~~~~~g~GLGL~i~~~i~~~~gG~i~v~s~~~ 507 (919)
T PRK11107 474 -------SISRRHGGTGLGLVITQKLVNEMGGDISFHSQPN 507 (919)
T ss_pred -------CCCCCCCCcchhHHHHHHHHHHhCCEEEEEecCC
Confidence 1112346789999876554 34566666543
No 70
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=94.93 E-value=0.07 Score=49.03 Aligned_cols=81 Identities=16% Similarity=0.178 Sum_probs=55.0
Q ss_pred hHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHH
Q 005370 29 EIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEA 108 (699)
Q Consensus 29 ~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~ 108 (699)
..++.|++.||+.+...- .....+.|++..+...-.|+|.|+|.|++...+.....
T Consensus 33 ~lav~E~~~Nav~H~~~~-----------~~~~~v~v~~~~~~~~l~i~v~D~G~~~d~~~~~~~~~------------- 88 (125)
T PF13581_consen 33 ELAVSEALTNAVEHGYPG-----------DPDGPVDVRLEVDPDRLRISVRDNGPGFDPEQLPQPDP------------- 88 (125)
T ss_pred HHHHHHHHHHHHHHcCCC-----------CCCcEEEEEEEEcCCEEEEEEEECCCCCChhhccCccc-------------
Confidence 458999999999997520 11234566666777777899999999998775542110
Q ss_pred HhcCCCCCccccccchhhheeeecCeEEE
Q 005370 109 LQAGADVSMIGQFGVGFYSAYLVAERVVV 137 (699)
Q Consensus 109 ~~~~~~~~~iG~FGIGf~S~F~vad~v~V 137 (699)
........-|.|++-+-.++|++.+
T Consensus 89 ----~~~~~~~~~G~Gl~li~~l~D~~~~ 113 (125)
T PF13581_consen 89 ----WEPDSLREGGRGLFLIRSLMDEVDY 113 (125)
T ss_pred ----ccCCCCCCCCcCHHHHHHHHcEEEE
Confidence 0012334567777777778899988
No 71
>PRK10547 chemotaxis protein CheA; Provisional
Probab=94.89 E-value=0.091 Score=62.43 Aligned_cols=53 Identities=17% Similarity=0.205 Sum_probs=33.7
Q ss_pred HHHHHhcHHHHHHh----hhhhhccCCCccCCCCCceEEEEE--cCCCCEEEEEeCCCCCCHHHHHH
Q 005370 32 LRELISNSSDALDK----IRFESLTDKSKLDGQPELFIRIIP--DKANKTLTIVDSGIGMTKADLVN 92 (699)
Q Consensus 32 lRELIqNA~DA~~k----~r~~~~~~~~~~~~~~~~~I~I~~--d~~~~~l~I~DnGiGMt~~el~~ 92 (699)
|..||.||+|++-. |+.. +......|.|.. ..+.-.|+|.|||.||+.+.+.+
T Consensus 390 L~hLirNAidHgie~p~~R~~~--------gkp~~G~I~l~a~~~~~~v~I~V~DdG~GId~e~i~~ 448 (670)
T PRK10547 390 LTHLVRNSLDHGIELPEKRLAA--------GKNSVGNLILSAEHQGGNICIEVTDDGAGLNRERILA 448 (670)
T ss_pred HHHHHHHHHHhhccchhhHHhc--------CCCCCCceEEEEEEcCCEEEEEEEeCCCCCCHHHHHH
Confidence 56899999999732 1110 111223455554 33334589999999999988764
No 72
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=94.88 E-value=0.038 Score=64.40 Aligned_cols=43 Identities=21% Similarity=0.425 Sum_probs=29.0
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHH
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKA 88 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~ 88 (699)
.++|+|+||..+.. ...+.|.+..+.+.-.|+|.|||+||+.+
T Consensus 473 il~ell~NA~kha~---------------a~~i~V~~~~~~~~~~l~V~D~G~Gi~~~ 515 (569)
T PRK10600 473 IAREALSNALKHAQ---------------ASEVVVTVAQNQNQVKLSVQDNGCGVPEN 515 (569)
T ss_pred HHHHHHHHHHHhCC---------------CCeEEEEEEEcCCEEEEEEEECCCCCCcc
Confidence 57788888766532 12345555555444579999999999964
No 73
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=94.80 E-value=0.076 Score=65.74 Aligned_cols=78 Identities=17% Similarity=0.260 Sum_probs=48.2
Q ss_pred HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005370 30 IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL 109 (699)
Q Consensus 30 i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~ 109 (699)
-++.-||.||+.+.. ...+.|.+..+.+.-.|+|.|||+||+.+++.+.+...-+...
T Consensus 565 qvl~NLl~NAik~t~---------------~G~I~I~v~~~~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~------- 622 (924)
T PRK10841 565 QVISNLLSNAIKFTD---------------TGCIVLHVRVDGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGT------- 622 (924)
T ss_pred HHHHHHHHHHHhhCC---------------CCcEEEEEEEeCCEEEEEEEEcCcCCCHHHHHHHhcccccCCC-------
Confidence 368889999888743 1234555555444456899999999999998854432211110
Q ss_pred hcCCCCCccccccchhhheeeec
Q 005370 110 QAGADVSMIGQFGVGFYSAYLVA 132 (699)
Q Consensus 110 ~~~~~~~~iG~FGIGf~S~F~va 132 (699)
......+..|+|+.-|-.++
T Consensus 623 ---~~~~~~~GtGLGL~I~k~lv 642 (924)
T PRK10841 623 ---GVQRNFQGTGLGLAICEKLI 642 (924)
T ss_pred ---CCCCCCCCeehhHHHHHHHH
Confidence 11122356799998776553
No 74
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=94.75 E-value=0.059 Score=52.47 Aligned_cols=88 Identities=16% Similarity=0.192 Sum_probs=54.6
Q ss_pred hHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHH
Q 005370 29 EIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEA 108 (699)
Q Consensus 29 ~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~ 108 (699)
..++.|++.||+...-. . .....+.|.+..+.+.-.|.|+|+|.||+...+...+. .....
T Consensus 44 ~lav~Ea~~Nai~ha~~-------~----~~~~~I~I~~~~~~~~l~i~V~D~G~gfd~~~~~~~~~---~~~~~----- 104 (159)
T TIGR01924 44 KIAVSEACTNAVKHAYK-------E----GENGEIGISFHIYEDRLEIIVSDQGDSFDMDTFKQSLG---PYDGS----- 104 (159)
T ss_pred HHHHHHHHHHHHHhccC-------C----CCCCeEEEEEEEeCCEEEEEEEEcccccCchhhccccC---CCCCC-----
Confidence 36899999999988631 0 11234556655555556689999999998776553221 10000
Q ss_pred HhcCCCCCccccccchhhheeeecCeEEEEE
Q 005370 109 LQAGADVSMIGQFGVGFYSAYLVAERVVVTT 139 (699)
Q Consensus 109 ~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T 139 (699)
........-|.|++-+=.++|++.+.+
T Consensus 105 ----~~~~~~~~~G~GL~Li~~L~D~v~~~~ 131 (159)
T TIGR01924 105 ----EPIDDLREGGLGLFLIETLMDEVEVYE 131 (159)
T ss_pred ----CCcccCCCCccCHHHHHHhccEEEEEe
Confidence 011111234888888888899988875
No 75
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=94.59 E-value=0.074 Score=67.46 Aligned_cols=76 Identities=18% Similarity=0.202 Sum_probs=46.1
Q ss_pred HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEE---cCCC--CEEEEEeCCCCCCHHHHHHHHhhhhccCchh
Q 005370 30 IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIP---DKAN--KTLTIVDSGIGMTKADLVNNLGTIARSGTKE 104 (699)
Q Consensus 30 i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~---d~~~--~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~ 104 (699)
-++..||.||+++... ..+.|.+.. +.+. -.|+|.|||+||+.+++.+.|... ..++
T Consensus 831 qvl~NLl~NAik~~~~---------------g~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f-~~~~-- 892 (1197)
T PRK09959 831 QVLSNLLSNALKFTTE---------------GAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRY-SQTS-- 892 (1197)
T ss_pred HHHHHHHHHHHHhCCC---------------CCEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhhccc-cccc--
Confidence 3788999999998641 123444332 2222 247999999999999887543221 1111
Q ss_pred HHHHHhcCCCCCccccccchhhheeeec
Q 005370 105 FMEALQAGADVSMIGQFGVGFYSAYLVA 132 (699)
Q Consensus 105 f~~~~~~~~~~~~iG~FGIGf~S~F~va 132 (699)
.....+..|+|++-|-.++
T Consensus 893 ---------~~~~~~G~GLGL~i~~~iv 911 (1197)
T PRK09959 893 ---------AGRQQTGSGLGLMICKELI 911 (1197)
T ss_pred ---------cCCCCCCcCchHHHHHHHH
Confidence 1112356899998776554
No 76
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=94.52 E-value=0.043 Score=56.88 Aligned_cols=48 Identities=25% Similarity=0.371 Sum_probs=35.1
Q ss_pred HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHH
Q 005370 30 IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVN 92 (699)
Q Consensus 30 i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~ 92 (699)
..+..||.||.+|+. .+.+.|.+....+.-.|.|.|||.||+++.+..
T Consensus 231 ~vl~nLi~NAi~~~~---------------~~~i~i~~~~~~~~i~i~V~D~G~Gi~~~~~~~ 278 (336)
T COG0642 231 QVLVNLLSNAIKYTP---------------GGEITISVRQDDEQVTISVEDTGPGIPEEELER 278 (336)
T ss_pred HHHHHHHHHHhccCC---------------CCeEEEEEEecCCeEEEEEEcCCCCCCHHHHHH
Confidence 478999999999973 123445554433346799999999999998663
No 77
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=94.11 E-value=0.15 Score=54.98 Aligned_cols=49 Identities=18% Similarity=0.157 Sum_probs=32.2
Q ss_pred HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcC--------C----CCEEEEEeCCCCCCHHHHHHH
Q 005370 30 IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDK--------A----NKTLTIVDSGIGMTKADLVNN 93 (699)
Q Consensus 30 i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~--------~----~~~l~I~DnGiGMt~~el~~~ 93 (699)
.+++.||+||+.|... ....|.|.... . .-.|.|.|||.||+.+.....
T Consensus 240 ~vl~nLl~NA~~~~~~---------------~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~i 300 (348)
T PRK11073 240 QVLLNIVRNALQALGP---------------EGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTL 300 (348)
T ss_pred HHHHHHHHHHHHHhcc---------------CCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhc
Confidence 4688999999999731 11234443211 0 125899999999999877643
No 78
>PRK13557 histidine kinase; Provisional
Probab=92.57 E-value=0.3 Score=55.57 Aligned_cols=53 Identities=17% Similarity=0.214 Sum_probs=32.7
Q ss_pred EEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHhcCCCCCccccccchhhheee----ecCeEEEEEec
Q 005370 75 TLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYL----VAERVVVTTKH 141 (699)
Q Consensus 75 ~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~~~~~~~~~iG~FGIGf~S~F~----vad~v~V~T~~ 141 (699)
.|+|.|||.||+.+.....|.. ..+.+ ...+..|+|++.+-. .+-++.|.|..
T Consensus 326 ~i~v~D~G~Gi~~~~~~~if~~-~~~~~-------------~~~~g~GlGL~i~~~~v~~~gG~i~~~s~~ 382 (540)
T PRK13557 326 SIAVTDTGSGMPPEILARVMDP-FFTTK-------------EEGKGTGLGLSMVYGFAKQSGGAVRIYSEV 382 (540)
T ss_pred EEEEEcCCCCCCHHHHHhccCC-CcccC-------------CCCCCCCccHHHHHHHHHHCCCEEEEEecC
Confidence 5899999999999887743321 11111 112467899876543 34556666643
No 79
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=91.30 E-value=0.66 Score=50.71 Aligned_cols=123 Identities=24% Similarity=0.297 Sum_probs=72.6
Q ss_pred hHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHH
Q 005370 29 EIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEA 108 (699)
Q Consensus 29 ~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~ 108 (699)
.-.+-||..||..|.-+... .++ ..-+++.|.|...+++-+|.|+|-|=|++..++.+ |..-..|.... .
T Consensus 262 ~ymlfElfKNamrATve~h~---~~~---~~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~~dr-lf~Y~ySTa~~--~- 331 (414)
T KOG0787|consen 262 YYMLFELFKNAMRATVEHHG---DDG---DELPPIKVTVAKGDEDLLIKISDRGGGVPHRDIDR-LFSYMYSTAPA--P- 331 (414)
T ss_pred HHHHHHHHHHHHHHHHHHhc---cCC---CCCCCeEEEEecCCcceEEEEecCCCCcChhHHHH-HHhhhcccCCC--C-
Confidence 45788999999999864321 111 11355677776677788999999999999999984 44455554221 0
Q ss_pred HhcCCCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccCceEEEEeCCCCCCCCCceEEEEEeccchhh
Q 005370 109 LQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQLE 184 (699)
Q Consensus 109 ~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~~~~~i~~~~~~~~~~~GT~I~L~lk~~~~~ 184 (699)
........+.--||.|+--+=.+|.-. +|...+.. -.+.||-+.++||.-..+
T Consensus 332 ~~d~~~~~plaGfG~GLPisrlYa~yf------------------~Gdl~L~S-----leG~GTD~yI~Lk~ls~~ 384 (414)
T KOG0787|consen 332 SSDNNRTAPLAGFGFGLPISRLYARYF------------------GGDLKLQS-----LEGIGTDVYIYLKALSME 384 (414)
T ss_pred CCCCCCcCcccccccCCcHHHHHHHHh------------------CCCeeEEe-----eeccccceEEEeccCCcc
Confidence 000011345666777774332222100 11212222 137999999999865443
No 80
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=91.06 E-value=0.3 Score=50.27 Aligned_cols=46 Identities=22% Similarity=0.205 Sum_probs=32.6
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCC--CEEEEEeCCCCCCH
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKAN--KTLTIVDSGIGMTK 87 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~--~~l~I~DnGiGMt~ 87 (699)
++-||++||.-...- . .+.+.++|.+..+.++ ..++|.|||.|++.
T Consensus 126 iv~EL~tNa~Khaf~------~-----~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~ 173 (221)
T COG3920 126 IVHELVTNALKHAFL------S-----RPGGEIRITLSREGDGGRFLLTVWDEGGGPPV 173 (221)
T ss_pred HHHHHHHHHHHhcCC------C-----CCCCEEEEEEEEcCCCCeEEEEEEECCCCCCC
Confidence 789999999987641 1 1234455555565554 57999999999984
No 81
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=91.03 E-value=0.96 Score=43.57 Aligned_cols=87 Identities=24% Similarity=0.347 Sum_probs=54.1
Q ss_pred hHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHH
Q 005370 29 EIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEA 108 (699)
Q Consensus 29 ~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~ 108 (699)
.+++-|++.||+.+.-+. +| +...+.|.+..+.+.-.++|.|.|.|+. ++...++.- +..
T Consensus 42 ~~av~E~~~N~v~Ha~~~------~~----~~g~I~i~~~~~~~~~~i~i~D~G~~~~--~~~~~~~~~--~~~------ 101 (146)
T COG2172 42 AIAVSEALTNAVKHAYKL------DP----SEGEIRIEVSLDDGKLEIRIWDQGPGIE--DLEESLGPG--DTT------ 101 (146)
T ss_pred HHHHHHHHHHHHHHHhhc------CC----CCceEEEEEEEcCCeEEEEEEeCCCCCC--CHHHhcCCC--CCC------
Confidence 468999999999987531 11 1134566666676777899999996665 555443321 000
Q ss_pred HhcCCCCCccccccchhhheeeecCeEEEEEec
Q 005370 109 LQAGADVSMIGQFGVGFYSAYLVAERVVVTTKH 141 (699)
Q Consensus 109 ~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~ 141 (699)
.+. .-.-|.|++-+=.+.|+|.+....
T Consensus 102 ----~~~--~~~~G~Gl~l~~~~~D~~~~~~~~ 128 (146)
T COG2172 102 ----AEG--LQEGGLGLFLAKRLMDEFSYERSE 128 (146)
T ss_pred ----Ccc--cccccccHHHHhhhheeEEEEecc
Confidence 011 112377777666688999888543
No 82
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=90.92 E-value=0.68 Score=52.80 Aligned_cols=43 Identities=28% Similarity=0.506 Sum_probs=32.1
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHH
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKA 88 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~ 88 (699)
.+||-++||.-.-. ...+.|.+....+.-+++|+|||+|++..
T Consensus 485 IvREAlsNa~KHa~---------------As~i~V~~~~~~g~~~~~VeDnG~Gi~~~ 527 (574)
T COG3850 485 IVREALSNAIKHAQ---------------ASEIKVTVSQNDGQVTLTVEDNGVGIDEA 527 (574)
T ss_pred HHHHHHHHHHHhcc---------------cCeEEEEEEecCCeEEEEEeeCCcCCCCc
Confidence 68999999986642 12456666666666789999999999854
No 83
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=90.78 E-value=0.92 Score=54.46 Aligned_cols=129 Identities=22% Similarity=0.239 Sum_probs=73.4
Q ss_pred HHHHHHhcHHHHHH----hhhhhhccCCCccCCCCCceEEEEEcCCCC--EEEEEeCCCCCCHHHHHHHHhhhhccCchh
Q 005370 31 FLRELISNSSDALD----KIRFESLTDKSKLDGQPELFIRIIPDKANK--TLTIVDSGIGMTKADLVNNLGTIARSGTKE 104 (699)
Q Consensus 31 ~lRELIqNA~DA~~----k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~--~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~ 104 (699)
.|.=||-||+|.+- .|+. .+..+.+.|.+..-..++ .|.|+|+|.|++.+-|.+.-..=|--+..+
T Consensus 436 PL~HLvRNAvDHGIE~pE~R~a--------~GKp~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~ 507 (716)
T COG0643 436 PLTHLVRNAVDHGIETPEERRA--------AGKPEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIREKAIERGLITEEE 507 (716)
T ss_pred cHHHHHhcchhccCCCHHHHHH--------cCCCCcceEEEEEEcCCCeEEEEEeeCCCCCCHHHHHHHHHHcCCCChHH
Confidence 35678999999974 2222 234456788888644443 379999999999998876421111111100
Q ss_pred HHHHHhcCCCCCccccccchhhheeeecCeEEEEEecCCCc-eEEEE-EccCceEEEEeCCCCCCCCCceEEEEEec
Q 005370 105 FMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDE-QYIWE-SQAGGSFTVTRDVSGEPLGRGTKMTLYLK 179 (699)
Q Consensus 105 f~~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~-~~~w~-~~~~~~~~i~~~~~~~~~~~GT~I~L~lk 179 (699)
.+.+ ++. =-+.+=|.+.|.-+++|+=.|..+=+. .+.=. ..-+|...|.. ..+.||+|+|+|-
T Consensus 508 -a~~l---Sd~---Ei~~LIF~PGFSTa~~VtdvSGRGVGMDVVk~~I~~LgG~I~V~S-----~~G~GT~Fti~LP 572 (716)
T COG0643 508 -AETL---SDE---EILNLIFAPGFSTAEQVTDVSGRGVGMDVVKTNIEQLGGSISVSS-----EPGKGTTFTIRLP 572 (716)
T ss_pred -hccC---CHH---HHHHHHhcCCCCcchhhhcccCCccCHHHHHHHHHHcCCEEEEEe-----cCCCCeEEEEecC
Confidence 0001 011 112334777888888887777543111 11000 01246666654 2589999999976
No 84
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=90.15 E-value=0.65 Score=53.88 Aligned_cols=73 Identities=21% Similarity=0.322 Sum_probs=45.6
Q ss_pred ceEEEEEc--CCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHhcCCCCCccccccchhhheeeec----CeEE
Q 005370 63 LFIRIIPD--KANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVA----ERVV 136 (699)
Q Consensus 63 ~~I~I~~d--~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~~~~~~~~~iG~FGIGf~S~F~va----d~v~ 136 (699)
..|.|..+ .+..++.|+|||+|++.+-+.+-|.-.- .+. ....+-| -|+|+.-|-.++ -++.
T Consensus 657 ~~i~I~~~r~ed~~t~sV~dng~Gi~~a~~~riF~iFq---------Rl~--s~~~y~g-tG~GL~I~kkI~e~H~G~i~ 724 (750)
T COG4251 657 PDIEISAERQEDEWTFSVRDNGIGIDPAYFERIFVIFQ---------RLH--SRDEYLG-TGLGLAICKKIAERHQGRIW 724 (750)
T ss_pred CceEEeeeccCCceEEEecCCCCCcCHHHHHHHHHHHH---------hcC--chhhhcC-CCccHHHHHHHHHHhCceEE
Confidence 45666643 4567899999999999988775543221 111 1223445 899998876663 4566
Q ss_pred EEEecCCCceE
Q 005370 137 VTTKHNDDEQY 147 (699)
Q Consensus 137 V~T~~~~~~~~ 147 (699)
|.|+-++...+
T Consensus 725 vEs~~gEgsTF 735 (750)
T COG4251 725 VESTPGEGSTF 735 (750)
T ss_pred EeecCCCceeE
Confidence 66664433333
No 85
>PRK13560 hypothetical protein; Provisional
Probab=89.26 E-value=0.39 Score=57.59 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=30.1
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCC---CCEEEEEeCCCCCCHH
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKA---NKTLTIVDSGIGMTKA 88 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~---~~~l~I~DnGiGMt~~ 88 (699)
.+.+|++||+.+... ......|.|..... .-.|+|.|||+||+.+
T Consensus 715 il~NLl~NAik~~~~-------------~~~~~~i~i~~~~~~~~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 715 IISELLSNALKHAFP-------------DGAAGNIKVEIREQGDGMVNLCVADDGIGLPAG 762 (807)
T ss_pred HHHHHHHHHHHhhcc-------------CCCCceEEEEEEEcCCCEEEEEEEeCCCcCCcc
Confidence 678999999988531 11223455544322 2468999999999864
No 86
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=89.17 E-value=0.3 Score=56.19 Aligned_cols=43 Identities=19% Similarity=0.229 Sum_probs=28.2
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHH
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKA 88 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~ 88 (699)
.++|++.||..+.. ...+.|++..+.+.-.|+|+|||.||+.+
T Consensus 414 il~nlL~NAiKha~---------------~~~I~I~l~~~~~~i~l~V~DnG~Gi~~~ 456 (495)
T PRK11644 414 VCQEGLNNIVKHAD---------------ASAVTLQGWQQDERLMLVIEDDGSGLPPG 456 (495)
T ss_pred HHHHHHHHHHHhCC---------------CCEEEEEEEEcCCEEEEEEEECCCCCCcC
Confidence 46788888776642 12345555444444569999999999843
No 87
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=88.68 E-value=0.81 Score=52.99 Aligned_cols=55 Identities=22% Similarity=0.473 Sum_probs=39.1
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCC--EEEEEeCCCCCCHHHHHHHH
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANK--TLTIVDSGIGMTKADLVNNL 94 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~--~l~I~DnGiGMt~~el~~~l 94 (699)
++-=||+||.+|++.+... +.+...|+++.+..++ .+.|.|||.|++.+...+.+
T Consensus 604 vf~NliKNA~EAi~~~~~~---------e~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~~ 660 (712)
T COG5000 604 VFGNLLKNAAEAIEAVEAE---------ERRTALIRVSLDDADGRIVVDVIDNGKGFPRENRHRAL 660 (712)
T ss_pred HHHHHHHhHHHHhhhcccc---------cCCcceEEEEEecCCCeEEEEEecCCCCCChHHhhhhc
Confidence 4456899999999865321 1112267888776555 47999999999999888544
No 88
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=87.05 E-value=0.55 Score=51.59 Aligned_cols=44 Identities=16% Similarity=0.348 Sum_probs=34.4
Q ss_pred HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHH
Q 005370 30 IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKA 88 (699)
Q Consensus 30 i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~ 88 (699)
-+++|.|.||.-.... ..+.|.+..+.+.-.|+|.|||.|.+.+
T Consensus 282 rivQEaltN~~rHa~A---------------~~v~V~l~~~~~~l~l~V~DnG~Gf~~~ 325 (365)
T COG4585 282 RIVQEALTNAIRHAQA---------------TEVRVTLERTDDELRLEVIDNGVGFDPD 325 (365)
T ss_pred HHHHHHHHHHHhccCC---------------ceEEEEEEEcCCEEEEEEEECCcCCCcc
Confidence 3789999999877542 3467777777667789999999999854
No 89
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=86.33 E-value=2.7 Score=50.47 Aligned_cols=55 Identities=20% Similarity=0.317 Sum_probs=39.9
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhc
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIAR 99 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~ 99 (699)
+|-=||.||.-.. .+...++|.+..+.++-.+.|.|||-|++.+++.+-|-...+
T Consensus 779 VLiNLleNA~Kya--------------p~~s~I~I~~~~~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r 833 (890)
T COG2205 779 VLINLLENALKYA--------------PPGSEIRINAGVERENVVFSVIDEGPGIPEGELERIFDKFYR 833 (890)
T ss_pred HHHHHHHHHHhhC--------------CCCCeEEEEEEEecceEEEEEEeCCCCCChhHHHHhhhhhhc
Confidence 5556777876553 223456777777777778999999999999999976655443
No 90
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=85.47 E-value=1.4 Score=49.32 Aligned_cols=55 Identities=25% Similarity=0.255 Sum_probs=39.6
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcC---CCCEEEEEeCCCCCCHHHHHHHHhhhhccC
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDK---ANKTLTIVDSGIGMTKADLVNNLGTIARSG 101 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~---~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~ 101 (699)
++--|+-||+|||.. ..+.|.+..+. +.-.|-|.|||-|...+=+. .|.+...++
T Consensus 568 VlvNl~~NaldA~~h---------------~~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~d-kLl~PFtts 625 (673)
T COG4192 568 VLVNLIVNALDASTH---------------FAPWIKLIALGTEQEMLRIAIIDNGQGWPHELVD-KLLTPFTTS 625 (673)
T ss_pred HHHHHHHHHHhhhcc---------------CCceEEEEeecCcccceEEEEecCCCCCchhHHH-HhcCCcccc
Confidence 677899999999973 12577777654 34579999999999987666 555554443
No 91
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=83.16 E-value=0.043 Score=62.73 Aligned_cols=239 Identities=13% Similarity=-0.003 Sum_probs=146.5
Q ss_pred HHHHHHHHHHHHh----hCHHHHHHHHHHHhHHhhccccCChhhHHHHhchhcccccCCCCceecHHHHHHhhcCCCceE
Q 005370 387 LVKKCIEMFNEIA----ENKEDYNKFYDAFSKNLKLGIHEDSQNRAKLADLLRYHSTKSSEEFTSLKDYVTRMKEGQKDI 462 (699)
Q Consensus 387 l~~k~~~~L~~la----~d~e~y~~f~~~~~~~lK~G~~eD~~~~e~l~~lLrf~ss~~~~~~~sL~eY~~rm~~~Q~~I 462 (699)
|++++.+-|.+.+ .+...+.++|+.|-..+..++-+.-.....--... ...........|.+++ .+.+++...
T Consensus 357 i~k~~rk~l~~k~l~~~~e~a~d~e~Y~kFy~~f~~~lk~gi~e~s~~~~k~-~a~lLry~ss~s~~~~--~Sl~dYv~r 433 (656)
T KOG0019|consen 357 VLRKLRKVLPQKILEMFQDLAKDAEKYKKFFKNYGLFLKEGIVTASEQQVKE-IAKLLRYESSKSGEGA--TSLDDYVER 433 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhcccchhhhhhhH-HHHHhhhhcccccccc--ccHHHHHHh
Confidence 3444444444433 25668889999997766666666544444433333 2222222345677777 555677777
Q ss_pred EEEeCCCHHHHhcChhhHHHHHcCCEEEEecCCchHHHHHHHhhccCceeEeccccCCCCCcchHHH--HhhHHHhHHhH
Q 005370 463 YYITGESKKAVENSPFLERLKKKGYEVLYMVDAIDEYAVGQLKEYEGKKLVSATKEGLKLDDETEEE--KKKKEEKKKSF 540 (699)
Q Consensus 463 yY~~~~~~~~~~~sp~lE~~~~kG~eVL~l~dpiDE~~l~~L~~~~~~~f~~V~~~~~~l~~~~~~~--~~~~~~~~~e~ 540 (699)
++.+..+.-.+.....-.+-.+-+||++..-++.+.||++.+.+|-...++......+-.- +.+. ....++.+.+.
T Consensus 434 m~~~qk~iyyi~~~s~~~~~~sp~~E~~k~~~~evly~~ep~DE~~~~~Lk~~~~k~lVsv--tkEglel~e~ee~~~k~ 511 (656)
T KOG0019|consen 434 MREGQKNIYYITAPNRQLAESSPYYEAFKKKNYEVLFMYEPADEVVLLGLKEFKGKKLVSV--TKEGVELPEDDEEKAKD 511 (656)
T ss_pred hcccccceEEeccchhhhhhcchHHHHHHhcCceeEeeeccHHHHHHHhhhhhcccceecc--chhhccCCccchhHHHH
Confidence 7777766666666666677788899999999999999999999998888877777654221 1111 11111212222
Q ss_pred HHHHHHHHHHhCCcccEEEEeecCCCCCEEEEeCCCCccHHHHHHHHHHhcccCccccccCCCceEEeCCCChHHHHHHH
Q 005370 541 ENLCKTMKDILGDRVEKVVVSDRIVDSPCCLVTGEYGWSANMERIMKAQALRDNSMSSYMSSKKTMEINPDNGIMEELRK 620 (699)
Q Consensus 541 ~~L~~~~k~~L~~~V~~V~vs~rL~dsP~~lv~~e~g~s~~mer~mka~~~~~~~~~~~~~~k~~LeiNp~HplIk~L~~ 620 (699)
.....-+. .|-. .++.+|.+ +|+-|+..+.++.++..++..+.-..+.+...|.+++..+.|+.|-+.- .+
T Consensus 512 ee~k~efe-~lck-----~mK~iL~~-kVekV~vs~RlvssPc~I~t~~~gwsAnmeriMkAqal~d~s~~~ym~~--kk 582 (656)
T KOG0019|consen 512 EESKKEFE-ELCK-----WMKEILGS-KVEKVTVNNRLVSHPAMITTLEYGWAARMERIMKAQALTDNETMGYMKA--KK 582 (656)
T ss_pred HHHHHHHH-HHHH-----HHHHHhcC-ceEEEEecCcccCCceEEEecccccchhHHHHHhhhhccccChhhhccc--cc
Confidence 22221221 2211 24457887 8888888888988888877655332333334567788999999988776 22
Q ss_pred hhhccCCchhHHHHHHHHH
Q 005370 621 RAEADKNDKSVKDLTMLLF 639 (699)
Q Consensus 621 ~~~~~~~~~~~~~~~~~Ly 639 (699)
..+.+++.+.++.+-...+
T Consensus 583 ~lEINP~hpivk~L~~~~~ 601 (656)
T KOG0019|consen 583 HLEINPDHPLVKTLRQLRE 601 (656)
T ss_pred eeeeCCCChHHHHHHHHHh
Confidence 2334556667777655544
No 92
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=78.31 E-value=1.9 Score=51.72 Aligned_cols=96 Identities=21% Similarity=0.227 Sum_probs=56.1
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHh
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQ 110 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~~ 110 (699)
++-|||.||+|-+..+.....-+.....-...+++.+..+ .. |.|||.||..+-+...+... .|.+.+
T Consensus 150 a~aeLldnalDEi~~~~tf~~vd~I~p~~d~~i~a~~v~~--~~---~s~~gg~~~~~~i~~~m~l~-~~~k~e------ 217 (775)
T KOG1845|consen 150 AIAELLDNALDEITNGATFVRVDYINPVMDIFIRALVVQL--KR---ISDDGGGMKPEVIRKCMSLG-YSSKKE------ 217 (775)
T ss_pred hhhhhccccccccccccceEEeeeecccccccceeEEeec--cc---eeccccccCHHHHHHHHHhh-hhhhhh------
Confidence 6889999999998753211000000000000011111111 11 67899999998888776543 333322
Q ss_pred cCCCCCccccccchhhheee-ecCeEEEEEec
Q 005370 111 AGADVSMIGQFGVGFYSAYL-VAERVVVTTKH 141 (699)
Q Consensus 111 ~~~~~~~iG~FGIGf~S~F~-vad~v~V~T~~ 141 (699)
-...+||+|.||.++.| ++..+.|.+|.
T Consensus 218 ---~~~tv~q~~~gfktst~rlGa~~i~~~R~ 246 (775)
T KOG1845|consen 218 ---ANSTVGQYGNGFKTSTMRLGADAIVFSRC 246 (775)
T ss_pred ---hhhhhhhhccccccchhhhccceeEeehh
Confidence 13578999999987655 78888888883
No 93
>PRK13559 hypothetical protein; Provisional
Probab=76.89 E-value=2.2 Score=46.29 Aligned_cols=44 Identities=16% Similarity=0.008 Sum_probs=27.7
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEE--cCC--CCEEEEEeCCCCCCH
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIP--DKA--NKTLTIVDSGIGMTK 87 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~--d~~--~~~l~I~DnGiGMt~ 87 (699)
++.||+.||+.+... + . ...+|.|.+ ... .-.|.|.|||.|+..
T Consensus 271 vl~nLi~NA~k~~~~------~-----~--~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~ 318 (361)
T PRK13559 271 VLHELAVNAIKHGAL------S-----A--DQGRISISWKPSPEGAGFRIDWQEQGGPTPP 318 (361)
T ss_pred HHHHHHHhHHHhccc------c-----C--CCcEEEEEEEecCCCCeEEEEEECCCCCCCC
Confidence 788999999877431 0 1 123455554 332 346888999998653
No 94
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=75.61 E-value=2.7 Score=48.54 Aligned_cols=42 Identities=24% Similarity=0.468 Sum_probs=26.8
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEc-CCCCEEEEEeCCCCCCH
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPD-KANKTLTIVDSGIGMTK 87 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d-~~~~~l~I~DnGiGMt~ 87 (699)
++.+|+.||+.+.. ...+.|.+... .+.-.|.|.|||+||+.
T Consensus 475 v~~nll~NA~k~~~---------------~~~i~i~~~~~~~~~~~i~V~D~G~Gi~~ 517 (565)
T PRK10935 475 IIREATLNAIKHAN---------------ASEIAVSCVTNPDGEHTVSIRDDGIGIGE 517 (565)
T ss_pred HHHHHHHHHHhcCC---------------CCeEEEEEEEcCCCEEEEEEEECCcCcCC
Confidence 56788888776532 12244544444 23346899999999985
No 95
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=74.48 E-value=4.5 Score=48.48 Aligned_cols=125 Identities=17% Similarity=0.194 Sum_probs=72.3
Q ss_pred HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHH--------HHhhhhccC
Q 005370 30 IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVN--------NLGTIARSG 101 (699)
Q Consensus 30 i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~--------~l~~Ia~S~ 101 (699)
-..-|.+-||.| -. | |+. .-.|.++++++...|.|.+||-|+.-+.... -+|....|+
T Consensus 56 ki~dEilvNaad-k~--r-----d~~------m~~i~v~i~~e~~~isv~nnGkGIPv~~H~~ek~yvpelifg~Lltss 121 (842)
T KOG0355|consen 56 KIFDEILVNAAD-KQ--R-----DPK------MNTIKVTIDKEKNEISVYNNGKGIPVTIHKVEKVYVPELIFGNLLTSS 121 (842)
T ss_pred HHHHHHhhcccc-cc--c-----CCC------cceeEEEEccCCCEEEEEeCCCcceeeecccccccchHHHHhhhhhcc
Confidence 356799999999 32 1 332 2478888899999999999999997543221 234444444
Q ss_pred chhHHHHHhcCCCCCccccccchhhheeeecCeEEEEEecC-C--CceEEEEEccC--ceEEEEeCCCCCCCCCceEEEE
Q 005370 102 TKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHN-D--DEQYIWESQAG--GSFTVTRDVSGEPLGRGTKMTL 176 (699)
Q Consensus 102 ~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~-~--~~~~~w~~~~~--~~~~i~~~~~~~~~~~GT~I~L 176 (699)
.- ......-.-|+-|.|-.-|=.++-+.+|.|... - .....|..... ..-.+... ..+.+|+|++
T Consensus 122 ny------~d~ekK~tggrngygakLcniFs~~f~~Et~d~~~~~~~kQ~w~~nm~~~~~~~i~~~----~~~~yTkitF 191 (842)
T KOG0355|consen 122 NY------DDDEKKVTGGRNGYGAKLCNIFSTEFTVETADREYKMAFKQTWINNMTRDEEPKIVPS----TDEDYTKITF 191 (842)
T ss_pred cc------CCCccccccCCCccceeeeeeccccceeeeeehHhHHHHHHhhhcCCcccCCceeecC----CCCCcceEEe
Confidence 21 111112234666777666666666777776532 1 22346765532 12122221 1234999988
Q ss_pred Ee
Q 005370 177 YL 178 (699)
Q Consensus 177 ~l 178 (699)
..
T Consensus 192 ~P 193 (842)
T KOG0355|consen 192 SP 193 (842)
T ss_pred Cc
Confidence 73
No 96
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=73.63 E-value=10 Score=43.27 Aligned_cols=55 Identities=22% Similarity=0.333 Sum_probs=39.2
Q ss_pred CCCchHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCC--CEEEEEeCCCCCCHHHHH
Q 005370 25 YSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKAN--KTLTIVDSGIGMTKADLV 91 (699)
Q Consensus 25 Ys~~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~--~~l~I~DnGiGMt~~el~ 91 (699)
+-+|...|-=||.||.-|+-+.+ .+.+.|.|..-..+ -.+.|.|||.||++.-..
T Consensus 348 l~~p~l~lqpLvENAi~hgi~~~------------~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~ 404 (456)
T COG2972 348 LIDPKLVLQPLVENAIEHGIEPK------------RPGGSIAISAKKQDDVIQISISDNGPGIDEEKLE 404 (456)
T ss_pred ccCchHHHhHHHHHHHHHhcccC------------CCCCEEEEEEEEcCCEEEEEEeeCCCCCChhHHH
Confidence 45777888889999999985421 23346666653333 458999999999987666
No 97
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=72.31 E-value=6 Score=43.30 Aligned_cols=56 Identities=25% Similarity=0.361 Sum_probs=36.4
Q ss_pred ceEEEEEcCCC--CEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHhcCCCCCccccccchhhhe
Q 005370 63 LFIRIIPDKAN--KTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSA 128 (699)
Q Consensus 63 ~~I~I~~d~~~--~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~~~~~~~~~iG~FGIGf~S~ 128 (699)
.+|.+...... -.|+|.|.|.|++++++.+-|-..-+-.+ ......|--|+|++-+
T Consensus 362 g~Itv~~~~~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdk----------ARsR~~gGTGLGLaIa 419 (459)
T COG5002 362 GRITVSVKQRETWVEISISDQGLGIPKEDLEKIFDRFYRVDK----------ARSRKMGGTGLGLAIA 419 (459)
T ss_pred CeEEEEEeeeCcEEEEEEccCCCCCCchhHHHHHHHHhhhhh----------hhhhcCCCCchhHHHH
Confidence 35666654333 45899999999999999976654432211 1223568888998543
No 98
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=53.99 E-value=16 Score=39.75 Aligned_cols=57 Identities=12% Similarity=0.241 Sum_probs=36.3
Q ss_pred CCCCchHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHH
Q 005370 24 FYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLV 91 (699)
Q Consensus 24 LYs~~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~ 91 (699)
|-+...+++.-.+|-|.-.+++- .+...+.|.+.-..+.-+++|+|||.|++..++.
T Consensus 352 l~~e~~talyRv~QEaltNIErH-----------a~Atrv~ill~~~~d~vql~vrDnG~GF~~~~~~ 408 (459)
T COG4564 352 LKPEVATALYRVVQEALTNIERH-----------AGATRVTILLQQMGDMVQLMVRDNGVGFSVKEAL 408 (459)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhh-----------cCCeEEEEEeccCCcceEEEEecCCCCccchhhc
Confidence 33445566777888888777741 0112334444444556689999999999976655
No 99
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=53.38 E-value=11 Score=45.45 Aligned_cols=53 Identities=25% Similarity=0.521 Sum_probs=37.0
Q ss_pred EEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHhcCCCCCccccccchhhhe-eeecCeEEEEEecCC
Q 005370 76 LTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSA-YLVAERVVVTTKHND 143 (699)
Q Consensus 76 l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~~~~~~~~~iG~FGIGf~S~-F~vad~v~V~T~~~~ 143 (699)
++..|+|+||+.+++...+- | ......||++|=|+.|. +-+++.+.+.|+..+
T Consensus 2 l~~~Ddg~Gms~d~a~~~~~---------f------~~~~~~ig~ygnG~ksgs~r~gkd~~~~tk~~~ 55 (775)
T KOG1845|consen 2 LCFLDDGLGMSPDEAPKAIN---------F------AVGLYGIGDYGNGLKSGSMRIGKDFILFTKKES 55 (775)
T ss_pred cccccCCCCcCchhhhhhhh---------h------cccccccccccCcccccccccCcccceeecccc
Confidence 57889999999999885332 1 12345678888888765 556767777776543
No 100
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=48.79 E-value=33 Score=32.93 Aligned_cols=56 Identities=14% Similarity=0.207 Sum_probs=44.0
Q ss_pred ChHHHHHHHhhhccCCchhHHHHHHHHHHH----HHHhCCC-CCCCHHHHHHHHHHHHHhcCCC
Q 005370 612 NGIMEELRKRAEADKNDKSVKDLTMLLFET----ALLTSGF-SLDDPNTFGSRIHRMLKLGLSI 670 (699)
Q Consensus 612 HplIk~L~~~~~~~~~~~~~~~~~~~Lyd~----AlL~~G~-~l~d~~~f~~r~~~ll~~~l~~ 670 (699)
||.|+.+.++.++ ++.+..++.++|+| +-=.+.. .+.|=..|..-++.+|..+-.-
T Consensus 2 ~p~vqefk~lIe~---dp~l~ml~~~Mf~q~~~~~~p~g~~~~i~~~~~mL~~ln~i~t~AP~~ 62 (141)
T PF12588_consen 2 HPVVQEFKDLIES---DPRLYMLFTQMFDQPPYNADPTGNPPQIRDYDEMLQLLNHIMTTAPEF 62 (141)
T ss_pred ChHHHHHHHHHhc---CHHHHHHHHHHHhCcccccCCCCCccccccHHHHHHHHHHHHhhCCcc
Confidence 8999999999964 57899999999999 3333333 5778899999999999865443
No 101
>PF14501 HATPase_c_5: GHKL domain
Probab=45.50 E-value=34 Score=30.14 Aligned_cols=71 Identities=20% Similarity=0.254 Sum_probs=38.1
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHh
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQ 110 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~~ 110 (699)
.|-=|+.||++|+.+. .+...+.|.+....+.-.|+|...-.+ ++. .+. ++
T Consensus 9 il~nlldNAiea~~~~-----------~~~~~I~i~~~~~~~~~~i~i~N~~~~----~~~----~~~-~~--------- 59 (100)
T PF14501_consen 9 ILGNLLDNAIEACKKY-----------EDKRFISISIREENGFLVIIIENSCEK----EIE----KLE-SS--------- 59 (100)
T ss_pred HHHHHHHHHHHHHHhc-----------CCCcEEEEEEEecCCEEEEEEEECCCC----ccc----ccc-cc---------
Confidence 4456899999998752 112234444444433344666666433 111 111 11
Q ss_pred cCCCCCccccccchhhheeeecCe
Q 005370 111 AGADVSMIGQFGVGFYSAYLVAER 134 (699)
Q Consensus 111 ~~~~~~~iG~FGIGf~S~F~vad~ 134 (699)
....+..|+|+.++=.+.++
T Consensus 60 ----~~~~~~~G~GL~~v~~i~~~ 79 (100)
T PF14501_consen 60 ----SSKKKGHGIGLKNVKKILEK 79 (100)
T ss_pred ----ccCCCCCCcCHHHHHHHHHH
Confidence 12336889999988666543
No 102
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=45.10 E-value=21 Score=40.82 Aligned_cols=86 Identities=23% Similarity=0.370 Sum_probs=52.9
Q ss_pred CCCCchHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCC---CCCCHHHHHHHHhhhhcc
Q 005370 24 FYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSG---IGMTKADLVNNLGTIARS 100 (699)
Q Consensus 24 LYs~~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnG---iGMt~~el~~~l~~Ia~S 100 (699)
.+.-|..+|||+|.||+=.-+ |. . ....+.|+|. ..+|.|...| .||+.+++.+. +|
T Consensus 267 v~dyP~~alREai~NAv~HRD---Ys---~-----~~~~v~I~iy----dDRieI~NPGgl~~gi~~~~l~~~-----~s 326 (467)
T COG2865 267 VWDYPLEALREAIINAVIHRD---YS---I-----RGRNVHIEIY----DDRIEITNPGGLPPGITPEDLLKG-----RS 326 (467)
T ss_pred cccCCHHHHHHHHHHHHHhhc---cc---c-----CCCceEEEEE----CCeEEEECCCCCCCCCChhHcccC-----CC
Confidence 445578899999999974432 21 1 1124555553 4579999977 58898888753 34
Q ss_pred Cchh-HHHHHhcCCCCCccccccchhhheeee
Q 005370 101 GTKE-FMEALQAGADVSMIGQFGVGFYSAYLV 131 (699)
Q Consensus 101 ~~~~-f~~~~~~~~~~~~iG~FGIGf~S~F~v 131 (699)
-.+. .+..+= .+..+|=+.|.|+-=.|-.
T Consensus 327 ~~RNp~LA~~l--~~~~liE~~GSGi~rm~~~ 356 (467)
T COG2865 327 KSRNPVLAKVL--RDMGLIEERGSGIRRMFDL 356 (467)
T ss_pred cccCHHHHHHH--HHhhhHHHhCccHHHHHHH
Confidence 3222 111111 2457889999998555544
No 103
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=43.59 E-value=25 Score=38.82 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=19.9
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCCCC
Q 005370 61 PELFIRIIPDKANKTLTIVDSGIGMT 86 (699)
Q Consensus 61 ~~~~I~I~~d~~~~~l~I~DnGiGMt 86 (699)
..+.|.+..+.+.-.+.|.|||+|++
T Consensus 429 S~V~i~l~~~~e~l~Lei~DdG~Gl~ 454 (497)
T COG3851 429 SAVTIQLWQQDERLMLEIEDDGSGLP 454 (497)
T ss_pred ceEEEEEeeCCcEEEEEEecCCcCCC
Confidence 34666666666556799999999997
No 104
>PF06112 Herpes_capsid: Gammaherpesvirus capsid protein; InterPro: IPR009299 This family consists of several Gammaherpesvirus capsid proteins. The exact function of this family is unknown.; GO: 0019028 viral capsid
Probab=35.58 E-value=41 Score=32.41 Aligned_cols=19 Identities=11% Similarity=0.293 Sum_probs=16.4
Q ss_pred EeCCCChHHHHHHHhhhcc
Q 005370 607 EINPDNGIMEELRKRAEAD 625 (699)
Q Consensus 607 eiNp~HplIk~L~~~~~~~ 625 (699)
+.+|+||||++|..+...+
T Consensus 17 ~d~p~~plv~~~~~L~q~N 35 (147)
T PF06112_consen 17 ADYPNHPLVAKLQALPQNN 35 (147)
T ss_pred ccCCCCHHHHHHHhhccCC
Confidence 5799999999999988654
No 105
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=28.54 E-value=4.6e+02 Score=32.27 Aligned_cols=87 Identities=20% Similarity=0.137 Sum_probs=57.4
Q ss_pred hhcccccCCCCceecHHHHHHhhc--CCCceEEEEeCCCHHHHhcChhhHHHHHcCCEEEEecCCchHHHHHHHhhccCc
Q 005370 433 LLRYHSTKSSEEFTSLKDYVTRMK--EGQKDIYYITGESKKAVENSPFLERLKKKGYEVLYMVDAIDEYAVGQLKEYEGK 510 (699)
Q Consensus 433 lLrf~ss~~~~~~~sL~eY~~rm~--~~Q~~IyY~~~~~~~~~~~sp~lE~~~~kG~eVL~l~dpiDE~~l~~L~~~~~~ 510 (699)
..-|--..+-+|+||+.....+.. .+.+.|.+++.+.++.......-......|++|....+|-+ +...+.++.++
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~--l~~al~~~~~~ 264 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAAD--LRFALAALGDK 264 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHH--HHHHHHHhcCC
Confidence 444444445578999999887764 33468999998876633222222223457777776666533 56777788888
Q ss_pred eeEeccccCCC
Q 005370 511 KLVSATKEGLK 521 (699)
Q Consensus 511 ~f~~V~~~~~~ 521 (699)
.++=||..+..
T Consensus 265 D~VLIDTAGRs 275 (767)
T PRK14723 265 HLVLIDTVGMS 275 (767)
T ss_pred CEEEEeCCCCC
Confidence 99999998853
No 106
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=25.19 E-value=2.1e+02 Score=24.62 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=41.2
Q ss_pred CCceEEEEeCCCHH-HHhcChhhHHHHHcCCEEEEecCCchHHHHHHHhhccCceeEecc
Q 005370 458 GQKDIYYITGESKK-AVENSPFLERLKKKGYEVLYMVDAIDEYAVGQLKEYEGKKLVSAT 516 (699)
Q Consensus 458 ~Q~~IyY~~~~~~~-~~~~sp~lE~~~~kG~eVL~l~dpiDE~~l~~L~~~~~~~f~~V~ 516 (699)
+.+.+|.+.|+++. .+..+|+. ...|..|||..+.+++.+...|......++.-|.
T Consensus 24 ~~~~v~ia~g~~~~Dalsa~~~a---~~~~~PIll~~~~l~~~~~~~l~~~~~~~v~iiG 80 (92)
T PF04122_consen 24 KSDKVYIASGDNFADALSASPLA---AKNNAPILLVNNSLPSSVKAFLKSLNIKKVYIIG 80 (92)
T ss_pred CCCEEEEEeCcchhhhhhhHHHH---HhcCCeEEEECCCCCHHHHHHHHHcCCCEEEEEC
Confidence 55678888887744 34444543 3478999999999999999999888666666553
No 107
>PTZ00069 60S ribosomal protein L5; Provisional
Probab=24.08 E-value=1.1e+02 Score=32.81 Aligned_cols=66 Identities=27% Similarity=0.403 Sum_probs=38.9
Q ss_pred ceeeeecC-CCCCCccchhhhc--ccHHH--HHHHHHH-HHHHHHHHHHHhh-CHHHHHHHHHHHhHHhhccccCC
Q 005370 355 FIKGVVDS-DDLPLNISREMLQ--QNKIL--KVIRKNL-VKKCIEMFNEIAE-NKEDYNKFYDAFSKNLKLGIHED 423 (699)
Q Consensus 355 Fv~GvVDS-~dLplnvSRE~lq--~~~~l--~~i~~~l-~~k~~~~L~~la~-d~e~y~~f~~~~~~~lK~G~~eD 423 (699)
.++|.||+ =++|-+-+|=-=. ++.-+ ...|+.| +.-|.++++.|.+ |+|.| .++|+.+||.|+--|
T Consensus 163 alKGa~DgGl~IPhs~~rfpg~d~e~~~~dAe~hR~rI~G~HVa~Ym~~Lkeedee~y---k~qFS~yik~gl~~d 235 (300)
T PTZ00069 163 ALKGAVDGGLHIPHSPNRFPGYSKEKDSYDAEVHRDRIFGKHVAEYMKQLKEEDPDKY---KKQFSKYIKAGVGPD 235 (300)
T ss_pred ehhcccccCcccCCCCCcCCCCCccccccChHHHHhhhcchhHHHHHHHhhhhChHHH---HHHHHHHHHcCCChh
Confidence 35777774 3455544431000 11111 3344444 6777788888875 88765 568888899999765
No 108
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=22.48 E-value=1.1e+02 Score=29.32 Aligned_cols=39 Identities=23% Similarity=0.248 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHhHHhhccccCC
Q 005370 385 KNLVKKCIEMFNEIAENKEDYNKFYDAFSKNLKLGIHED 423 (699)
Q Consensus 385 ~~l~~k~~~~L~~la~d~e~y~~f~~~~~~~lK~G~~eD 423 (699)
..+..|++..|..++..-...-.|...|..--+.|+++|
T Consensus 101 ~~Vk~kil~li~~W~~~f~~~p~~~~~Y~~Lk~~G~i~~ 139 (139)
T cd03567 101 EKVKTKIIELLYSWTLELPHEPKIKEAYDMLKKQGIIKD 139 (139)
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHCCCcCC
Confidence 367788999999888511111225566777778888875
No 109
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.59 E-value=3.2e+02 Score=26.61 Aligned_cols=81 Identities=21% Similarity=0.164 Sum_probs=46.7
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchh-HHHHH
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKE-FMEAL 109 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~-f~~~~ 109 (699)
...|||.||+-.-+ ..++.|+.+.....-.+.+..---+-|..+.++.|..|--..-.+ .++++
T Consensus 67 l~NELiENAVKfra---------------~geIvieasl~s~~f~~kvsN~vd~~t~~~f~~ll~~it~gDP~dLlieRi 131 (184)
T COG5381 67 LANELIENAVKFRA---------------TGEIVIEASLYSHKFIFKVSNIVDLPTTIDFENLLKVITEGDPLDLLIERI 131 (184)
T ss_pred HHHHHHHhhhcccC---------------CCcEEEEEEeccceEEEEecccCCCccHHHHHHHHHHHhcCChHHHHHHHH
Confidence 56799999986533 234556666655555566766666778888887776554433333 45555
Q ss_pred hcCCCCCccccccchhh
Q 005370 110 QAGADVSMIGQFGVGFY 126 (699)
Q Consensus 110 ~~~~~~~~iG~FGIGf~ 126 (699)
..+.-.+--..=|+|++
T Consensus 132 EanA~~~d~~gSglGLL 148 (184)
T COG5381 132 EANALESDCEGSGLGLL 148 (184)
T ss_pred HhhccCCCCccccccce
Confidence 43211112234477774
No 110
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=21.53 E-value=1.3e+02 Score=33.91 Aligned_cols=43 Identities=21% Similarity=0.397 Sum_probs=31.3
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHhcCCCCCccccccchhh
Q 005370 61 PELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFY 126 (699)
Q Consensus 61 ~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~~~~~~~~~iG~FGIGf~ 126 (699)
.+-.|+|.+.. +.-+.| ||.-|+.-++...|..|| |++|||+.
T Consensus 211 ~p~~v~i~F~~-G~pv~i--ng~~~~~~~li~~lN~i~--------------------g~~GvGr~ 253 (394)
T TIGR00032 211 EPEVVTIDFEQ-GVPVAL--NGVSLDPVELILEANEIA--------------------GKHGVGRI 253 (394)
T ss_pred CCeEEEEEEEc-ceEEEE--CCccCCHHHHHHHHHHHH--------------------HhcccCcc
Confidence 34567777753 344555 899999999988887665 78899984
No 111
>PF04025 DUF370: Domain of unknown function (DUF370); InterPro: IPR007169 This is a bacterial family of unknown function.
Probab=20.78 E-value=1.1e+02 Score=26.05 Aligned_cols=36 Identities=19% Similarity=0.329 Sum_probs=28.3
Q ss_pred hHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCC
Q 005370 29 EIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGI 83 (699)
Q Consensus 29 ~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 83 (699)
...+++|+|+|-+... -|+.+.....+.+.|.|+|+
T Consensus 23 Sap~Krl~~~ak~~~~-------------------lIdaT~Grktrsviitdsgh 58 (73)
T PF04025_consen 23 SAPIKRLIQEAKEEGK-------------------LIDATYGRKTRSVIITDSGH 58 (73)
T ss_pred chhHHHHHHHHHHcCc-------------------EEEeeCCCceeEEEEEcCCc
Confidence 4568999999988764 46776666678899999996
No 112
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=20.72 E-value=1.7e+02 Score=32.01 Aligned_cols=64 Identities=14% Similarity=0.161 Sum_probs=33.8
Q ss_pred CCCCch---HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCC----CCEEEEEeCCCCCCHHHHH
Q 005370 24 FYSNKE---IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKA----NKTLTIVDSGIGMTKADLV 91 (699)
Q Consensus 24 LYs~~~---i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~----~~~l~I~DnGiGMt~~el~ 91 (699)
+|.|++ -++--||.||..|+.-+-- +...+.- ...+-+++++-.. ...|.|.|||-|++.+=..
T Consensus 235 v~~d~DqliQv~LNlVrNAaqA~~~~~~---~~g~I~L-rTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~ 305 (363)
T COG3852 235 VLGDRDQLIQVFLNLVRNAAQALGGRAD---EGGEIIL-RTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQD 305 (363)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCCC---CCceEEE-EeccceEEEccCceeEeeeeeEEecCCCCCChHHhh
Confidence 455543 2567899999999873100 0000000 0122333333222 2358899999999965443
Done!