Query 005370
Match_columns 699
No_of_seqs 251 out of 1683
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 23:25:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005370.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005370hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cg9_A ATP-dependent molecular 100.0 3E-166 1E-170 1420.8 50.2 665 1-669 1-677 (677)
2 2o1u_A Endoplasmin; GRP94, HSP 100.0 6E-153 2E-157 1310.6 59.7 631 4-673 22-664 (666)
3 2ioq_A Chaperone protein HTPG; 100.0 9E-148 3E-152 1265.0 49.5 615 1-665 1-623 (624)
4 1y4s_A Chaperone protein HTPG; 100.0 6E-134 2E-138 1138.3 37.9 550 1-590 1-558 (559)
5 3hjc_A Heat shock protein 83-1 100.0 1E-120 5E-125 996.6 41.7 417 256-673 11-427 (444)
6 3q6m_A Heat shock protein HSP 100.0 2E-119 7E-124 982.5 39.7 413 263-676 2-414 (448)
7 2cge_A ATP-dependent molecular 100.0 1E-115 5E-120 954.6 41.6 404 264-669 1-405 (405)
8 1hk7_A Heat shock protein HSP8 100.0 1.5E-90 5.1E-95 717.7 24.5 288 264-553 1-288 (288)
9 2gq0_A Chaperone protein HTPG; 100.0 1.7E-88 5.7E-93 706.9 24.6 288 264-573 2-294 (303)
10 3pry_A Heat shock protein HSP 100.0 1E-86 3.6E-91 683.6 25.4 263 262-524 1-263 (268)
11 1usu_A Heat shock protein HSP8 100.0 9.6E-87 3.3E-91 682.0 23.8 257 262-518 1-257 (260)
12 1y6z_A Heat shock protein, put 100.0 8.5E-84 2.9E-88 664.3 22.7 258 262-519 1-263 (263)
13 3peh_A Endoplasmin homolog; st 100.0 3.2E-59 1.1E-63 484.6 20.0 257 4-262 23-281 (281)
14 3ied_A Heat shock protein; HSP 100.0 8.3E-55 2.8E-59 442.0 18.5 205 4-210 24-271 (272)
15 1qy5_A Endoplasmin; GRP94, NEC 100.0 2E-54 6.9E-59 450.0 19.4 258 4-262 5-269 (269)
16 3nmq_A Heat shock protein HSP 100.0 1.5E-53 5E-58 434.2 22.1 208 4-212 16-223 (239)
17 3o0i_A HSP90AA1 protein; HSP90 100.0 2.3E-49 7.9E-54 407.1 21.9 215 4-219 37-251 (256)
18 3t0h_A Heat shock protein HSP 100.0 2.2E-48 7.5E-53 395.7 21.8 214 4-218 9-222 (228)
19 2gqp_A Endoplasmin; GRP94, HSP 100.0 1.7E-47 5.9E-52 392.2 20.4 208 4-212 9-221 (236)
20 2wer_A ATP-dependent molecular 100.0 6.1E-45 2.1E-49 370.0 21.5 211 1-212 1-211 (220)
21 1yc1_A HSP 86, heat shock prot 100.0 1.5E-44 5E-49 375.4 21.3 209 4-213 45-253 (264)
22 2ior_A Chaperone protein HTPG; 100.0 2E-40 6.8E-45 339.8 17.9 205 4-211 24-233 (235)
23 1sf8_A Chaperone protein HTPG; 100.0 1.7E-31 5.8E-36 246.5 12.3 114 542-665 12-125 (126)
24 1b63_A MUTL; DNA mismatch repa 99.8 6.8E-18 2.3E-22 181.3 15.9 279 22-388 19-329 (333)
25 1h7s_A PMS1 protein homolog 2; 99.5 8E-15 2.7E-19 159.1 9.8 165 13-203 15-196 (365)
26 3h4l_A DNA mismatch repair pro 99.5 1.1E-14 3.6E-19 157.8 9.1 153 22-203 20-186 (367)
27 3na3_A DNA mismatch repair pro 99.5 3.2E-13 1.1E-17 145.1 15.3 158 16-203 16-189 (348)
28 3fv5_A DNA topoisomerase 4 sub 99.1 4.9E-10 1.7E-14 111.7 11.9 161 27-210 17-190 (201)
29 1mu5_A Type II DNA topoisomera 99.0 1.1E-09 3.8E-14 122.4 9.8 148 29-199 34-196 (471)
30 1kij_A DNA gyrase subunit B; t 98.9 3.8E-09 1.3E-13 115.5 10.8 159 29-210 34-205 (390)
31 2zbk_B Type 2 DNA topoisomeras 98.9 2.8E-09 9.4E-14 120.7 9.9 149 29-200 33-196 (530)
32 1s16_A Topoisomerase IV subuni 98.8 2.8E-08 9.6E-13 108.5 13.5 167 22-210 23-204 (390)
33 3cwv_A DNA gyrase, B subunit, 98.7 3.1E-07 1.1E-11 99.5 18.6 153 28-210 31-194 (369)
34 1ei1_A DNA gyrase B, GYRB; ATP 98.7 7.9E-08 2.7E-12 105.0 13.1 158 27-210 34-206 (391)
35 2q2e_B Type 2 DNA topoisomeras 98.6 1.3E-08 4.5E-13 116.8 5.3 156 29-210 39-212 (621)
36 4duh_A DNA gyrase subunit B; s 98.6 1.3E-07 4.5E-12 95.3 11.8 155 29-210 37-207 (220)
37 4emv_A DNA topoisomerase IV, B 98.6 2.1E-07 7.1E-12 94.2 12.0 157 29-211 42-214 (226)
38 1zxm_A TOPO IIA ATPase, DNA to 98.6 1.4E-07 4.8E-12 103.1 11.0 161 29-209 54-230 (400)
39 3lnu_A Topoisomerase IV subuni 98.3 1.5E-06 5.3E-11 94.9 10.9 164 22-210 42-223 (408)
40 3ttz_A DNA gyrase subunit B; p 98.1 2E-05 6.7E-10 78.2 11.8 141 28-210 32-180 (198)
41 1pvg_A DNA topoisomerase II; G 98.0 2.8E-05 9.6E-10 85.4 11.8 158 30-210 67-244 (418)
42 1th8_A Anti-sigma F factor; SP 97.5 0.00012 4.2E-09 67.5 6.4 85 29-140 41-125 (145)
43 4ew8_A Sensor protein DIVL; si 97.4 0.00012 4.2E-09 74.0 6.2 73 30-132 158-230 (268)
44 1i58_A Chemotaxis protein CHEA 97.4 0.00012 4E-09 70.6 4.8 58 32-91 52-109 (189)
45 2btz_A Pyruvate dehydrogenase 97.4 0.00023 8E-09 77.2 7.5 116 30-180 234-349 (394)
46 1ysr_A Sensor-type histidine k 97.4 0.00016 5.3E-09 66.8 5.1 76 30-133 49-124 (150)
47 3d36_A Sporulation kinase B; G 97.4 0.00017 5.9E-09 71.5 5.8 74 31-133 127-200 (244)
48 3a0y_A Sensor protein; ATP-LID 97.3 0.00019 6.3E-09 66.0 4.8 72 30-131 50-121 (152)
49 3sl2_A Sensor histidine kinase 97.3 0.00011 3.9E-09 69.9 3.0 78 31-132 47-126 (177)
50 3ehg_A Sensor kinase (YOCF pro 97.2 0.00016 5.4E-09 65.4 3.5 45 31-90 44-88 (128)
51 1gkz_A [3-methyl-2-oxobutanoat 97.2 0.00023 7.7E-09 77.2 5.1 96 30-133 241-348 (388)
52 3ehh_A Sensor kinase (YOCF pro 97.2 0.00025 8.6E-09 69.4 5.0 45 31-90 134-178 (218)
53 1id0_A PHOQ histidine kinase; 97.2 0.00035 1.2E-08 64.3 5.6 73 30-132 47-119 (152)
54 4gfh_A DNA topoisomerase 2; to 97.1 0.0034 1.2E-07 77.0 13.8 146 30-198 62-223 (1177)
55 2e0a_A Pyruvate dehydrogenase 97.0 0.0013 4.6E-08 71.3 8.5 117 30-180 233-349 (394)
56 3jz3_A Sensor protein QSEC; he 97.0 0.00048 1.6E-08 67.2 4.4 96 31-180 121-216 (222)
57 2q8g_A [pyruvate dehydrogenase 97.0 0.0014 4.7E-08 71.5 8.5 117 30-180 246-362 (407)
58 1y8o_A [pyruvate dehydrogenase 96.9 0.0017 5.6E-08 71.3 8.5 118 30-180 256-373 (419)
59 2c2a_A Sensor histidine kinase 96.9 0.00078 2.7E-08 67.9 5.3 80 30-132 141-222 (258)
60 1r62_A Nitrogen regulation pro 96.7 0.0013 4.5E-08 60.6 4.6 74 30-132 51-134 (160)
61 1bxd_A ENVZ(290-450), protein 96.6 0.0014 4.7E-08 61.2 4.3 74 31-132 51-124 (161)
62 3zxo_A Redox sensor histidine 96.3 0.0013 4.6E-08 58.7 2.2 43 31-89 47-89 (129)
63 1b3q_A Protein (chemotaxis pro 96.3 0.0041 1.4E-07 67.2 6.4 52 32-91 111-168 (379)
64 3a0r_A Sensor protein; four he 95.7 0.0033 1.1E-07 65.6 2.2 48 31-92 248-295 (349)
65 3zxq_A Hypoxia sensor histidin 95.3 0.0072 2.5E-07 53.6 2.7 43 31-89 43-85 (124)
66 4fpp_A Phosphotransferase; fou 94.1 0.041 1.4E-06 55.4 4.9 47 31-91 150-198 (247)
67 3ke6_A Protein RV1364C/MT1410; 87.8 0.6 2.1E-05 50.5 6.1 73 29-139 299-372 (399)
68 1ixm_A SPO0B, protein (sporula 73.5 2.8 9.6E-05 40.8 4.4 55 30-92 108-164 (192)
No 1
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-166 Score=1420.82 Aligned_cols=665 Identities=67% Similarity=1.056 Sum_probs=570.2
Q ss_pred CCcccccchhhcHHHHHHHHHhcCCCCchHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEe
Q 005370 1 MADTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVD 80 (699)
Q Consensus 1 m~~~e~~~F~~d~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~D 80 (699)
|+ .|+|+||+|+++||+||+++||||+++|||||||||+||++++|++++++++.......+.|+|.++.++++|+|+|
T Consensus 1 ~~-~e~~~Fqae~~~Ll~li~~sLYsnkeifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~~~~~I~I~D 79 (677)
T 2cg9_A 1 MA-SETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRD 79 (677)
T ss_dssp -C-CEEEECCCCHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGGTEEEEEE
T ss_pred CC-ccceehhhhHHHHHHHHHHhCCCCchHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeCCCCEEEEEE
Confidence 55 58999999999999999999999999999999999999999999999999988777778899999988889999999
Q ss_pred CCCCCCHHHHHHHHhhhhccCchhHHHHHhcCCCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccCceEEEE
Q 005370 81 SGIGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVT 160 (699)
Q Consensus 81 nGiGMt~~el~~~l~~Ia~S~~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~~~~~i~ 160 (699)
||+|||++||.++|++||+||++.|+++++.+.+...||||||||||+||+|++|+|+|++.++.++.|+++|++.|+|.
T Consensus 80 nGiGMt~edl~~~l~tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySaf~vadkV~V~Sk~~~~~~~~W~s~g~~~~ti~ 159 (677)
T 2cg9_A 80 SGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVT 159 (677)
T ss_dssp CSCCCCHHHHHGGGSSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGGGGTEEEEEEEEECTTSCEEEEEECSSSEEEEE
T ss_pred CCCCCCHHHHHHHHHhHhccccHHHHHhhhcccchhhcCCCCchhHHHhhcCcEEEEEEccCCCceEEEEEcCCceEEEe
Confidence 99999999999999999999999998877655567899999999999999999999999987778999999999999999
Q ss_pred eCCCCCCCCCceEEEEEeccchhhcccHHHHHHHHHHhcCCCccceEeecccccccccCCCCCCC-----------cccc
Q 005370 161 RDVSGEPLGRGTKMTLYLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEISDDEDDE-----------PKKE 229 (699)
Q Consensus 161 ~~~~~~~~~~GT~I~L~lk~~~~~~~~~~~l~~ii~~ys~fl~~pI~~~~~~~~~~~~~~~~~~~-----------~~~~ 229 (699)
+++.+...++||+|+|||+++..+|++.++|+++|++||+|++|||+++..++.+++++++++++ ++++
T Consensus 160 ~~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~i~~lvkkys~fi~~PI~l~~~k~~~~~~~~~e~~~~~~~~~~e~~~~~~~ 239 (677)
T 2cg9_A 160 LDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVEKEVPIPEEEKKDEEKKDEEKKDEDD 239 (677)
T ss_dssp ECCSSCCCSSEEEEEEEECTTGGGGGCHHHHHHHHHHHSTTCSSCEEECCCCCCCCC-----------------------
T ss_pred ecCCCCCCCCCeEEEEEEcchhhccccHHHHHHHHHHHHhhCCCCeEEeeccccccCcCcchhhhccccccccccccccc
Confidence 85323456899999999999999999999999999999999999999986543333332211100 0001
Q ss_pred ccCCccccchHHHhhhcccccccccccceeeeccCCCCccCCCCCCCHHHHHHHHHHhhcCccCCceeeeeecccceeeE
Q 005370 230 EEGDVEDVDEEKEKEGKKKKKIKEVSHEWQLINKQKPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFK 309 (699)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~piW~~~~~~v~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~ 309 (699)
+.+++++++++++ +.+++++++++..+|++||+++|||+|+|++||+|||.+|||+++++|++||+|+||++||+++|+
T Consensus 240 ~~~~~~~~~~~~~-~~~~~k~~~~~~~e~e~iN~~~plW~r~~~eit~eeY~~FYk~l~~d~~~pl~~~H~~veg~~~~~ 318 (677)
T 2cg9_A 240 KKPKLEEVDEEEE-KKPKTKKVKEEVQEIEELNKTKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFR 318 (677)
T ss_dssp -----------------------CCCCCBCCCCCCCCTTSSCGGGCCTTTHHHHHHHHTTCCSCCSEEEEEEECSSSCEE
T ss_pred cccccccccchhh-hcccccccccccccceecccCCCCcccCcccCCHHHHHHHHHHhcCCCCCchheEEecccccceEE
Confidence 1122222111110 123345555667799999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCcchhhhcccceEEEeeceeccccccccccccccceeeeecCCCCCCccchhhhcccHHHHHHHHHHHH
Q 005370 310 AVLFVPKRAPFDLFDTRKKMNNIKLYVRRVFIMDNCEELIPEYLGFIKGVVDSDDLPLNISREMLQQNKILKVIRKNLVK 389 (699)
Q Consensus 310 ~llyiP~~~p~~~~~~~~~~~~i~LY~~rv~I~d~~~~llP~~l~Fv~GvVDS~dLplnvSRE~lq~~~~l~~i~~~l~~ 389 (699)
||||||+++||++|.+.+.++||+||||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++
T Consensus 319 ~lLyiP~~ap~d~~~~~~~~~~ikLYv~rVfI~d~~~~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~I~~~l~k 398 (677)
T 2cg9_A 319 AILFIPKRAPFDLFESKKKKNNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVK 398 (677)
T ss_dssp EEEEECSSCCC---------CCSEEEETTEEEEECSTTTSCGGGTTCEEEEEESSCCCCBTTTBCCCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCchhhhhhhhccCCeEEEEeeeEeecChhhhchHHHHHheeecccCCCCcccCHHHhccCHHHHHHHHHHHH
Confidence 99999999999999755567999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHhHHhhccccCChhhHHHHhchhcccccCCCCceecHHHHHHhhcCCCceEEEEeCCC
Q 005370 390 KCIEMFNEIAENKEDYNKFYDAFSKNLKLGIHEDSQNRAKLADLLRYHSTKSSEEFTSLKDYVTRMKEGQKDIYYITGES 469 (699)
Q Consensus 390 k~~~~L~~la~d~e~y~~f~~~~~~~lK~G~~eD~~~~e~l~~lLrf~ss~~~~~~~sL~eY~~rm~~~Q~~IyY~~~~~ 469 (699)
|++++|.+||+|+++|++||++||.+||+|+++|+.||++|++||||+||.++++++||++|++|||++|+.|||++|++
T Consensus 399 kvl~~l~~la~~~e~y~~f~~~fg~~lK~G~~eD~~nr~~l~~llrf~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~s 478 (677)
T 2cg9_A 399 KLIEAFNEIAEDSEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGES 478 (677)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHCSSSHHHHHTTCCBEESSCTTSCBCSTTHHHHSCTTCCEEEEEECSC
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHhHHhhhhhccCHHHHHHHHhheEeeecCCCCceeeHHHHHHhccccCceEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999976689999999999999999999999999
Q ss_pred HHHHhcChhhHHHHHcCCEEEEecCCchHHHHHHHhhccCceeEeccccCCCCCcchHHHHhhHHHhHHhHHHHHHHHHH
Q 005370 470 KKAVENSPFLERLKKKGYEVLYMVDAIDEYAVGQLKEYEGKKLVSATKEGLKLDDETEEEKKKKEEKKKSFENLCKTMKD 549 (699)
Q Consensus 470 ~~~~~~sp~lE~~~~kG~eVL~l~dpiDE~~l~~L~~~~~~~f~~V~~~~~~l~~~~~~~~~~~~~~~~e~~~L~~~~k~ 549 (699)
++++++|||+|.|+++|||||||++||||+|+++|.+|+|++|++|+++ ++|++ .+++++..++.++++++|++|||+
T Consensus 479 ~~~~~~sp~~E~~~~kg~EVl~l~~~iDe~~~~~l~e~~gk~~~~v~k~-l~l~~-~e~~~~~~~~~~~~~~~L~~~~k~ 556 (677)
T 2cg9_A 479 LKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKD-FELEE-TDEEKAEREKEIKEYEPLTKALKE 556 (677)
T ss_dssp STTTTTCGGGHHHHTTTCCEEEECSHHHHHHHGGGSCBTTBEEECSCCC-CCSCS-STTSSTTHHHHHGGGHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHhCCceEEEeCCchHHHHHHHHHHhCCceEEEeecc-ccccc-chhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 98876 333344445567789999999999
Q ss_pred HhCCcccEEEEeecCCCCCEEEEeCCCCccHHHHHHHHHHhcccCccccccCCCceEEeCCCChHHHHHHHhhhcc-CCc
Q 005370 550 ILGDRVEKVVVSDRIVDSPCCLVTGEYGWSANMERIMKAQALRDNSMSSYMSSKKTMEINPDNGIMEELRKRAEAD-KND 628 (699)
Q Consensus 550 ~L~~~V~~V~vs~rL~dsP~~lv~~e~g~s~~mer~mka~~~~~~~~~~~~~~k~~LeiNp~HplIk~L~~~~~~~-~~~ 628 (699)
+|+++|.+|++|+||+++|||+|++++|||++|+|||++|+++++.+.+++.++++|||||+||||++|..+...+ .++
T Consensus 557 ~L~~~v~~V~~s~rl~~sP~~lv~~~~~~s~~merimka~~~~d~~~~~~~~~k~~LeiNp~hpli~~L~~~~~~d~~~~ 636 (677)
T 2cg9_A 557 ILGDQVEKVVVSYKLLDAPAAIRTGQFGWSANMERIMKAQALRDSSMSSYMSSKKTFEISPKSPIIKELKKRVDEGGAQD 636 (677)
T ss_dssp TTCSSCSCEECCSSCSSSCEEEECCTTSCCHHHHHHHTTCC-------------CEEEECTTCHHHHHHHHHHHTCCSSC
T ss_pred hcCCcceEEEEeccCCCCCEEEEeCcccccHHHHHHHHHhhccccccccccccCceEEEcCCCHHHHHHHHhhhccccCH
Confidence 9999999999999999999999999999999999999998766554555677899999999999999998876543 345
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCC
Q 005370 629 KSVKDLTMLLFETALLTSGFSLDDPNTFGSRIHRMLKLGLS 669 (699)
Q Consensus 629 ~~~~~~~~~Lyd~AlL~~G~~l~d~~~f~~r~~~ll~~~l~ 669 (699)
+.++++|++||+||||++|++++||+.|++|+|+||.++|+
T Consensus 637 ~~~~~~~~~Lyd~All~~G~~l~dp~~f~~ri~~ll~~~l~ 677 (677)
T 2cg9_A 637 KTVKDLTKLLYETALLTSGFSLDEPTSFASRINRLISLGLN 677 (677)
T ss_dssp SSSSTTHHHHHHHHHHHTTCCCSSTTHHHHHHHHTSSSSCC
T ss_pred HHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHhcC
Confidence 67899999999999999999999999999999999987664
No 2
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=100.00 E-value=5.9e-153 Score=1310.58 Aligned_cols=631 Identities=53% Similarity=0.923 Sum_probs=539.6
Q ss_pred ccccchhhcHHHHHHHHHhcCCCCchHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCC
Q 005370 4 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGI 83 (699)
Q Consensus 4 ~e~~~F~~d~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 83 (699)
.|+++||+++++||++|+++||||+++|||||||||+||++|+|+++++++........+.|+|.++.++++|+|+|||+
T Consensus 22 ~e~~~Fqaei~~Ll~li~~sLYsn~eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~DnGi 101 (666)
T 2o1u_A 22 SEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGV 101 (666)
T ss_dssp ------------CCSSSTTTTSSSCTTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTTTEEEEEECSC
T ss_pred ccceehHHhHHHHHHHHHHhccCCchHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCCCCEEEEEECCC
Confidence 48899999999999999999999999999999999999999999999999987766777899999998889999999999
Q ss_pred CCCHHHHHHHHhhhhccCchhHHHHHhcC-----CCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccCceEE
Q 005370 84 GMTKADLVNNLGTIARSGTKEFMEALQAG-----ADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFT 158 (699)
Q Consensus 84 GMt~~el~~~l~~Ia~S~~~~f~~~~~~~-----~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~~~~~ 158 (699)
|||++||.++|++||+||++.|+++++.+ .+...||||||||||+||||++|+|+|++.++.++.|+++| |.|+
T Consensus 102 GMt~edl~~~l~tIA~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~vAdkV~V~Sr~~~~~~~~W~s~g-g~~t 180 (666)
T 2o1u_A 102 GMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFS 180 (666)
T ss_dssp CCCHHHHHHHTTC-------------------------------CTTGGGGGTEEEEEEEEECTTSCCEEEEESS-SCCE
T ss_pred CCCHHHHHHHHhhhcccccHHHHHHhhhcccccccchhhccCCCcHHHhHHHhcCEEEEEEeeCCCceEEEEEeC-CeEE
Confidence 99999999999999999999998888753 46679999999999999999999999998767799999999 9999
Q ss_pred EEeCCCCCCCCCceEEEEEeccchhhcccHHHHHHHHHHhcCCCccceEeecccccccccCCCCCCCccccccCCccccc
Q 005370 159 VTRDVSGEPLGRGTKMTLYLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEISDDEDDEPKKEEEGDVEDVD 238 (699)
Q Consensus 159 i~~~~~~~~~~~GT~I~L~lk~~~~~~~~~~~l~~ii~~ys~fl~~pI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (699)
+.+...+...++||+|+|+|+++..+|++.++|+++|++||+|+++||+++.+++.+
T Consensus 181 i~~~~~~~~~~~GT~I~L~Lk~d~~Efle~~~I~~ivkkys~fi~~PI~~~~~~~~~----------------------- 237 (666)
T 2o1u_A 181 VIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTGG----------------------- 237 (666)
T ss_dssp EEECTTCCSSSSEEEEEEEECTTTTTSSSTTHHHHHHHHHSTTCCSCEEEEECC--------------------------
T ss_pred EEecccCCCCCCCeEEEEEEccchhhhccHHHHHHHHHHHHhhCCCceEEecccccc-----------------------
Confidence 987532234689999999999999999999999999999999999999997643100
Q ss_pred hHHHhhhcccccccccccceeeeccCCCCccCCCCCCCHHHHHHHHHHhhcCccCCceeeeeecccceeeEEEEEecCCC
Q 005370 239 EEKEKEGKKKKKIKEVSHEWQLINKQKPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAVLFVPKRA 318 (699)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~iN~~~piW~~~~~~v~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~ 318 (699)
+ ++...+|+.+|+.+|+|+++++++++|+|.+||++++++|.+||+|+|+++||+++|+|+||+|+++
T Consensus 238 -------~-----~~~~~~~~~iN~~~~lw~~~~~~i~~eey~~fy~~~~~d~~~pl~~ih~~~eg~~~~~gll~iP~~~ 305 (666)
T 2o1u_A 238 -------G-----GKTVWDWELMNDIKPIWQRPSKEVEDDEYKAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFVPTSA 305 (666)
T ss_dssp ----------------CCEEEECSCCSCTTTSCTTTCCHHHHHHHHHHTTCTTSCCSEEEEEEECSSSCEEEEEEECSSC
T ss_pred -------c-----cccccceEEEecCccccccCcccccHHHHHHHHhhhccccccCeeEEEecccCcEEEEEEEEcCCCC
Confidence 0 0112468999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhh--hcccceEEEeeceeccccccccccccccceeeeecCCCCCCccchhhhcccHHHHHHHHHHHHHHHHHHH
Q 005370 319 PFDLFDTR--KKMNNIKLYVRRVFIMDNCEELIPEYLGFIKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFN 396 (699)
Q Consensus 319 p~~~~~~~--~~~~~i~LY~~rv~I~d~~~~llP~~l~Fv~GvVDS~dLplnvSRE~lq~~~~l~~i~~~l~~k~~~~L~ 396 (699)
||++|... ..+++++||||||||+|+|++|||+|++||+|||||+|||||||||+||+|+++++||+.|++|++++|.
T Consensus 306 p~d~~~~~~~~~~~~i~LYVn~vfI~d~~~~llP~~l~FvkGvVDs~dLplNVSRE~LQ~~~~l~~I~~~l~kkv~~~l~ 385 (666)
T 2o1u_A 306 PRGLFDEYGSKKSDYIKLYVRRVFITDDFHDMMPKYLNFVKGVVDSDDLPLNVSRETLQQHKLLKVIRKKLVRKTLDMIK 385 (666)
T ss_dssp CC------------CEEEEETTEEEESCCCTTSCGGGTTCEEEEEESSSCSSSCHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhccccccCCeEEEEcCeEeeCchhhhhHHHHHHeeeeeCHhhCCCcccchhhccCHHHHHHHHHHHHHHHHHHH
Confidence 99998642 3478999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCHHHHH-HHHHHHhHHhhccccCChhhHHHHhchhcccccCCCCceecHHHHHHhhcCCCceEEEEeCCCHHHHhc
Q 005370 397 EIAENKEDYN-KFYDAFSKNLKLGIHEDSQNRAKLADLLRYHSTKSSEEFTSLKDYVTRMKEGQKDIYYITGESKKAVEN 475 (699)
Q Consensus 397 ~la~d~e~y~-~f~~~~~~~lK~G~~eD~~~~e~l~~lLrf~ss~~~~~~~sL~eY~~rm~~~Q~~IyY~~~~~~~~~~~ 475 (699)
+||+ ++|+ +||++||.+||+|+++|+.||++|++||||+||.++++++||+||++|||++|+.|||++|++++++++
T Consensus 386 ~l~~--e~y~~~f~~~f~~~lK~G~~~D~~~~~~l~~ll~f~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~~~~~~~~ 463 (666)
T 2o1u_A 386 KIAD--EKYNDTFWKEFGTNIKLGVIEDHSNRTRLAKLLRFQSSHHPSDITSLDQYVERMKEKQDKIYFMAGSSRKEAES 463 (666)
T ss_dssp HSCH--HHHHHTHHHHHHHHHHHHHHHCGGGHHHHHTTCCEEETTSSSCEECHHHHHHHSCTTCCEEEEEECSSHHHHHT
T ss_pred HHHH--HHHHHHHHHHHHHHHhhhhccCHHHHHHHHhheEeeecCCCCceeeHHHHHHhcccccceEEEEeCCCHHHHhh
Confidence 9998 9999 999999999999999999999999999999999976789999999999999999999999999999999
Q ss_pred ChhhHHHHHcCCEEEEecCCchHHHHHHHhhccCceeEeccccCCCCCcchHHHHhhHHHhHHhHHHHHHHHHHH-hCCc
Q 005370 476 SPFLERLKKKGYEVLYMVDAIDEYAVGQLKEYEGKKLVSATKEGLKLDDETEEEKKKKEEKKKSFENLCKTMKDI-LGDR 554 (699)
Q Consensus 476 sp~lE~~~~kG~eVL~l~dpiDE~~l~~L~~~~~~~f~~V~~~~~~l~~~~~~~~~~~~~~~~e~~~L~~~~k~~-L~~~ 554 (699)
|||+|.|+++|||||||+|||||+|+++|.+|+|++|++|++++++|++ ++++++..++.++++++|++|||++ |+++
T Consensus 464 sp~~e~~~~kg~eVl~l~~~iDe~~~~~l~e~~gk~~~~v~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~~k~~~L~~~ 542 (666)
T 2o1u_A 464 SPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKRFQNVAKEGVKFDE-SEKTKESREAIEKEFEPLLNWMKDKALKDK 542 (666)
T ss_dssp CGGGHHHHHTTCCCEEECSTHHHHHHHTCCCBTTBEEEETTBSCCCCCC-CHHHHHHHHHHHHHSHHHHHHHHHTTTTTT
T ss_pred CcHHHHHHhCCceEEEeCCchHHHHHHHHHhcCCCceEEeccccccccc-chhhhhhhhhhHHhHHHHHHHHHhccCCCc
Confidence 9999999999999999999999999999999999999999999999876 4544554556677899999999999 9999
Q ss_pred ccEEEEeecCCCCCEEEEeCCCCccHHHHHHHHHHhcc---cCccccccCCCceEEeCCCChHHHHHHHhhhccCCchhH
Q 005370 555 VEKVVVSDRIVDSPCCLVTGEYGWSANMERIMKAQALR---DNSMSSYMSSKKTMEINPDNGIMEELRKRAEADKNDKSV 631 (699)
Q Consensus 555 V~~V~vs~rL~dsP~~lv~~e~g~s~~mer~mka~~~~---~~~~~~~~~~k~~LeiNp~HplIk~L~~~~~~~~~~~~~ 631 (699)
|.+|++|+||++||||+|++++|||++|+|||++|++. ++.+.+++..+++|||||+||||++|.++...+.+++.+
T Consensus 543 v~~V~~s~rl~~sP~~lv~~~~~~s~~m~r~~~~~~~~~~~~~~~~~~~~~k~~LeiNp~H~li~~l~~~~~~~~~~~~~ 622 (666)
T 2o1u_A 543 IEKAVVSQRLTESPCALVASQYGWSGNMERIMKAQAYQTGKDISTNYYASQKKTFEINPRHPLIKDMLRRVKEDEDDKTV 622 (666)
T ss_dssp EEEEEECSSCSSCSEEEEBCTTSCCHHHHHHHHHHHHHTSCCCCSCSSSSCCEEEEECTTSHHHHHHHHHHHHCTTCHHH
T ss_pred eeEEEEeecCCCCCeEEEecCcccCHHHHHHHHHhhhhcccCcccccccccCeeeEECCCCHHHHHHHHhhhcccchHHH
Confidence 99999999999999999999999999999999999872 333344677899999999999999999876655566789
Q ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCcc
Q 005370 632 KDLTMLLFETALLTSGFSLDDPNTFGSRIHRMLKLGLSIDEE 673 (699)
Q Consensus 632 ~~~~~~Lyd~AlL~~G~~l~d~~~f~~r~~~ll~~~l~~~~~ 673 (699)
+++|++|||||||++|++++||+.|++|+|+||.++|+++++
T Consensus 623 ~~~~~~l~d~All~~G~~~~dp~~f~~r~~~ll~~~l~~~~~ 664 (666)
T 2o1u_A 623 SDLAVVLFETATLRSGYLLPDTKAYGDRIERMLRLSLNIDPD 664 (666)
T ss_dssp HHHHHHHHHHHHHHHTCCCSCHHHHHHHHHHHHHTTSCC---
T ss_pred HHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcCCCcc
Confidence 999999999999999999999999999999999999999765
No 3
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=100.00 E-value=8.8e-148 Score=1264.97 Aligned_cols=615 Identities=40% Similarity=0.719 Sum_probs=522.1
Q ss_pred CCcccccchhhcHHHHHHHHHhcCCCCchHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEe
Q 005370 1 MADTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVD 80 (699)
Q Consensus 1 m~~~e~~~F~~d~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~D 80 (699)
|+..|+++||+++++||++|+++||||+.+|||||||||+||++++|+.+++++........+.|+|.++.++++|+|+|
T Consensus 1 m~~~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~D 80 (624)
T 2ioq_A 1 MKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISD 80 (624)
T ss_dssp --------------CCHHHHHHHHSSCTTHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTTTEEEEEE
T ss_pred CCcccceeeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeCCCcEEEEEE
Confidence 77568999999999999999999999999999999999999999999999999987766677899999998889999999
Q ss_pred CCCCCCHHHHHHHHhhhhccCchhHHHHHhcC--CCCCccccccchhhheeeecCeEEEEEecCC---CceEEEEEccCc
Q 005370 81 SGIGMTKADLVNNLGTIARSGTKEFMEALQAG--ADVSMIGQFGVGFYSAYLVAERVVVTTKHND---DEQYIWESQAGG 155 (699)
Q Consensus 81 nGiGMt~~el~~~l~~Ia~S~~~~f~~~~~~~--~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~---~~~~~w~~~~~~ 155 (699)
||+|||++||.++|++||+||++.|+++++.+ .+...||+||+||||+||||++|+|.|++.+ ..++.|++.+++
T Consensus 81 nGiGMt~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~ 160 (624)
T 2ioq_A 81 NGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEG 160 (624)
T ss_dssp CSCCCCHHHHHHHHHHHCC---------------CCTTHHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEECSSS
T ss_pred CCCCCCHHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHhcCCeEEEEECCCCCCCCeeEEEEEeCCC
Confidence 99999999999999999999999998877642 3567999999999999999999999999865 568999999999
Q ss_pred eEEEEeCCCCCCCCCceEEEEEeccchhhcccHHHHHHHHHHhcCCCccceEeecccccccccCCCCCCCccccccCCcc
Q 005370 156 SFTVTRDVSGEPLGRGTKMTLYLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEISDDEDDEPKKEEEGDVE 235 (699)
Q Consensus 156 ~~~i~~~~~~~~~~~GT~I~L~lk~~~~~~~~~~~l~~ii~~ys~fl~~pI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (699)
.|++.+. ...++||+|+|+|+++..+|++.++|+++|++||.|+++||.++.+ +. ++
T Consensus 161 ~~~i~~~---~~~~~GT~I~L~Lk~d~~Efl~~~~i~~ivkkys~fi~~PI~~~~~---e~----~~------------- 217 (624)
T 2ioq_A 161 EYTVADI---TKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKR---EE----KD------------- 217 (624)
T ss_dssp CCEEEEE---CCSSSEEEEEEEECTTCGGGGCHHHHHHHHHHHHTTCSSCEEEEEE---EE----CS-------------
T ss_pred eEEEEEC---CCCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceEEeec---cc----cc-------------
Confidence 9999874 2458999999999999999999999999999999999999999641 00 00
Q ss_pred ccchHHHhhhcccccccccccceeeeccCCCCccCCCCCCCHHHHHHHHHHhhcCccCCceeeeeecccceeeEEEEEec
Q 005370 236 DVDEEKEKEGKKKKKIKEVSHEWQLINKQKPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAVLFVP 315 (699)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~piW~~~~~~v~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP 315 (699)
++ ...+|+.+|+.+|+|+++++++++++|.+||++++++|.+||+|+|++++|+++|+|+||+|
T Consensus 218 ----------~~------~~~~~~~in~~~~lw~~~~~~i~~e~y~~fy~~~~~d~~~~l~~ih~~~eg~~~~~gll~~P 281 (624)
T 2ioq_A 218 ----------GE------TVISWEKINKAQALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIP 281 (624)
T ss_dssp ----------SC------EEEEEEECCCCSCTTTSCTTTCCHHHHHHHHHHHHTCCSCCSCCEEEEEESSSCEEEEEECC
T ss_pred ----------cc------cccceEEEeCCccceEecCccchHHHHHHHHHhhccchhcCeEEEEecccceEEEEEEEEeC
Confidence 00 02468999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchhhhcccceEEEeeceeccccccccccccccceeeeecCCCCCCccchhhhcccHHHHHHHHHHHHHHHHHH
Q 005370 316 KRAPFDLFDTRKKMNNIKLYVRRVFIMDNCEELIPEYLGFIKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMF 395 (699)
Q Consensus 316 ~~~p~~~~~~~~~~~~i~LY~~rv~I~d~~~~llP~~l~Fv~GvVDS~dLplnvSRE~lq~~~~l~~i~~~l~~k~~~~L 395 (699)
+++|+++|.. ..+++++||||||||+|+|++|||+|++||+|||||+|||||||||+||+|+++++||+.|++|++++|
T Consensus 282 ~~~p~~~~~r-~~~~~i~lyvn~v~I~d~~~~llP~~l~fv~gvVDs~dl~lNVSRE~LQ~~~~l~~I~~~l~kkv~~~l 360 (624)
T 2ioq_A 282 SQAPWDMWNR-DHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQML 360 (624)
T ss_dssp SSCCGGGSSS-SCCCCEEEEESSCEEEEEECSSSCTTSTTCEEEEEESSSCTTCCHHHHHHSSHHHHHHHHHHHHHHHHH
T ss_pred CcCccchhhh-cccCCeEEEECCEEeecchhccchhhhhhEEEEECHhhCCCccCchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999998863 357899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhh-CHHHHHHHHHHHhHHhhccccCChhhHHHHhchhcccccCCCC--ceecHHHHHHhhcCCCceEEEEeCCCHHH
Q 005370 396 NEIAE-NKEDYNKFYDAFSKNLKLGIHEDSQNRAKLADLLRYHSTKSSE--EFTSLKDYVTRMKEGQKDIYYITGESKKA 472 (699)
Q Consensus 396 ~~la~-d~e~y~~f~~~~~~~lK~G~~eD~~~~e~l~~lLrf~ss~~~~--~~~sL~eY~~rm~~~Q~~IyY~~~~~~~~ 472 (699)
.+||+ ||++|++||++||.+||+|+++|+.|+++|++||||+||.+++ +++||+||++|||++|+.|||++|+++++
T Consensus 361 ~~l~~~d~e~y~~f~~~f~~~lK~G~~~D~~~~~~l~~ll~f~ss~~~~~~~~~sL~eY~~rmke~q~~IyY~t~~~~~~ 440 (624)
T 2ioq_A 361 EKLAKDDAEKYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAA 440 (624)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHTTHHHHCCTTHHHHHHHCCBEETTSSCSCCCBCHHHHHTTCCTTCCSEEEEECSSHHH
T ss_pred HHHHhcCHHHHHHHHHHHhHHhhhhhccCHHHHHHHHHheEeeecCCCcCCCeeeHHHHHHhccccCceEEEEeCCCHHH
Confidence 99998 9999999999999999999999999999999999999998653 79999999999999999999999999999
Q ss_pred HhcChhhHHHHHcCCEEEEecCCchHHHHHHHhhccCceeEeccccCCCCCcchHHHHhhHHHhHHhHHHHHHHHHHHhC
Q 005370 473 VENSPFLERLKKKGYEVLYMVDAIDEYAVGQLKEYEGKKLVSATKEGLKLDDETEEEKKKKEEKKKSFENLCKTMKDILG 552 (699)
Q Consensus 473 ~~~sp~lE~~~~kG~eVL~l~dpiDE~~l~~L~~~~~~~f~~V~~~~~~l~~~~~~~~~~~~~~~~e~~~L~~~~k~~L~ 552 (699)
+++|||+|.|+++|||||||++||||+|+++|.+|+|++|++|++++++++...+++++..++.++++++|++|+|++|+
T Consensus 441 ~~~sp~~e~~~~kg~eVl~~~~~iDe~~~~~l~~~~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k~~L~ 520 (624)
T 2ioq_A 441 AKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLADEVDESAKEAEKALTPFIDRVKALLG 520 (624)
T ss_dssp HHHCHHHHHHHHHTCCCEEECSSTHHHHTTTCCEETTEEEEETTSCSTTTTTCC-------HHHHHHHHHHHHHHHHHSS
T ss_pred HhhChHHHHHHhCCceEEEecCchHHHHHHHHHhcCCceEEEeecccccccccchhhhhhhhHhHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999988652233333334556789999999999999
Q ss_pred CcccEEEEeecCCCCCEEEEeCCCCccHHHHHHHHHHhcccCccccccCCCceEEeCCCChHHHHHHHhhhccCCchhHH
Q 005370 553 DRVEKVVVSDRIVDSPCCLVTGEYGWSANMERIMKAQALRDNSMSSYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVK 632 (699)
Q Consensus 553 ~~V~~V~vs~rL~dsP~~lv~~e~g~s~~mer~mka~~~~~~~~~~~~~~k~~LeiNp~HplIk~L~~~~~~~~~~~~~~ 632 (699)
++|++|++|+||+++|||+|++++|||++|+|||++|++ .++..+++|||||+||||++|... .+++.++
T Consensus 521 ~~v~~V~~s~rl~~sP~~lv~~~~~~~~~m~r~m~~~~~------~~~~~~~~LeiN~~hpli~~L~~~----~~~~~~~ 590 (624)
T 2ioq_A 521 ERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAGQ------KVPEVKYIFELNPDHVLVKRAADT----EDEAKFS 590 (624)
T ss_dssp SSSSEEEECCCCSSCCEEEECCC---------------------------CCEEEECTTCHHHHTTTSC----CCHHHHH
T ss_pred CCceEEEEeecCCCCcEEEEecCcCcCHHHHHHHHHhhh------cccccCceEEECCCCHHHHHHHhh----cCHHHHH
Confidence 999999999999999999999999999999999998853 234578999999999999999652 2456799
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q 005370 633 DLTMLLFETALLTSGFSLDDPNTFGSRIHRMLK 665 (699)
Q Consensus 633 ~~~~~Lyd~AlL~~G~~l~d~~~f~~r~~~ll~ 665 (699)
++|++||+||||++|++++||+.|++|+|+||.
T Consensus 591 ~~~~~L~d~All~~g~~l~dp~~f~~r~~~~l~ 623 (624)
T 2ioq_A 591 EWVELLLDQALLAERGTLEDPNLFIRRMNQLLV 623 (624)
T ss_dssp HHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccCHHHHHHHHHHHhh
Confidence 999999999999999999999999999999995
No 4
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=100.00 E-value=6e-134 Score=1138.30 Aligned_cols=550 Identities=42% Similarity=0.750 Sum_probs=439.6
Q ss_pred CCcccccchhhcHHHHHHHHHhcCCCCchHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEe
Q 005370 1 MADTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVD 80 (699)
Q Consensus 1 m~~~e~~~F~~d~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~D 80 (699)
|+..|++.||+++++||++|+++||||+.+|||||||||+||++|+|+.+++++........+.|+|.++.++++|+|.|
T Consensus 1 m~~~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~D 80 (559)
T 1y4s_A 1 MKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISD 80 (559)
T ss_dssp CCSCEEEECCTTHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTTTEEEEEE
T ss_pred CCCccceeeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeCCCcEEEEEE
Confidence 77668999999999999999999999999999999999999999999999999987766777899999998889999999
Q ss_pred CCCCCCHHHHHHHHhhhhccCchhHHHHHhcC--CCCCccccccchhhheeeecCeEEEEEecCC---CceEEEEEccCc
Q 005370 81 SGIGMTKADLVNNLGTIARSGTKEFMEALQAG--ADVSMIGQFGVGFYSAYLVAERVVVTTKHND---DEQYIWESQAGG 155 (699)
Q Consensus 81 nGiGMt~~el~~~l~~Ia~S~~~~f~~~~~~~--~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~---~~~~~w~~~~~~ 155 (699)
||+|||++||.++|++||+||++.|+++++.+ .+...||+||+||||+||||++|+|.|++.+ ..++.|++.+++
T Consensus 81 nGiGMt~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~ 160 (559)
T 1y4s_A 81 NGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEG 160 (559)
T ss_dssp CSSCCCHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSSS
T ss_pred CCCCCCHHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhhccCeEEEEEcCCCCCCCeeEEEEEeCCC
Confidence 99999999999999999999999887666532 3567999999999999999999999999865 578999999999
Q ss_pred eEEEEeCCCCCCCCCceEEEEEeccchhhcccHHHHHHHHHHhcCCCccceEeecccccccccCCCCCCCccccccCCcc
Q 005370 156 SFTVTRDVSGEPLGRGTKMTLYLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEISDDEDDEPKKEEEGDVE 235 (699)
Q Consensus 156 ~~~i~~~~~~~~~~~GT~I~L~lk~~~~~~~~~~~l~~ii~~ys~fl~~pI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (699)
.|++.+. ...++||+|+|+|+++..+|++.++|+++|++||.|+++||.++.+. . ++
T Consensus 161 ~~~i~~~---~~~~~GT~I~L~Lk~d~~Efle~~~I~~iv~kys~fi~~PI~~~~~e---~----~~------------- 217 (559)
T 1y4s_A 161 EYTVADI---TKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKRE---E----KD------------- 217 (559)
T ss_dssp EEEEEEE---CCCSCEEEEEEEECTTCGGGSCHHHHHHHHHHHHTTCSSCEEEEEEE---C----ST-------------
T ss_pred eeEEeEC---CCCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceEEeecc---c----cc-------------
Confidence 9999874 24589999999999999999999999999999999999999996410 0 00
Q ss_pred ccchHHHhhhcccccccccccceeeeccCCCCccCCCCCCCHHHHHHHHHHhhcCccCCceeeeeecccceeeEEEEEec
Q 005370 236 DVDEEKEKEGKKKKKIKEVSHEWQLINKQKPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAVLFVP 315 (699)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~piW~~~~~~v~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP 315 (699)
++ ...+|+.+|+.+|+|+++++++++++|.+||++++++|.+||+|+|++++|+++|+|+||+|
T Consensus 218 ----------~~------~~~~~~~in~~~~lw~~~~~~i~~e~y~~fy~~~~~d~~~~l~~ih~~~eg~~~~~gll~~P 281 (559)
T 1y4s_A 218 ----------GE------TVISWEKINKAQALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIP 281 (559)
T ss_dssp ----------TS------CEEEEEECCCCCCGGGSCGGGCCHHHHHHHHHHHHTCSSCEEEEEEECCCSSSCEEEEEEEE
T ss_pred ----------cc------cccceEEEeCCccceecCcccccHHHHHHHHHhhhhhhhcCeEEEEeccCCceEEEEEEEcC
Confidence 00 02468999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchhhhcccceEEEeeceeccccccccccccccceeeeecCCCCCCccchhhhcccHHHHHHHHHHHHHHHHHH
Q 005370 316 KRAPFDLFDTRKKMNNIKLYVRRVFIMDNCEELIPEYLGFIKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMF 395 (699)
Q Consensus 316 ~~~p~~~~~~~~~~~~i~LY~~rv~I~d~~~~llP~~l~Fv~GvVDS~dLplnvSRE~lq~~~~l~~i~~~l~~k~~~~L 395 (699)
+++|+++|.. ..+++++||||||||+|+|++|||+|++||+|||||+|||||||||+||+|+++++||+.|++|++++|
T Consensus 282 ~~~p~~~~~r-~~~~~i~lyvn~v~I~d~~~~llP~~l~fv~gvVDs~dlplNVSRE~lq~~~~l~~I~~~l~kkv~~~l 360 (559)
T 1y4s_A 282 SQAPWDMWNR-DHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQML 360 (559)
T ss_dssp SSCCTTCSSS-SCCCCEEEEETTEEEEEEEGGGSCGGGTTCEEEEEESSSCTTCCTTGGGGCHHHHHHHHHHHHHHHHHH
T ss_pred CcCcchhhhh-cccCCeEEEEcCEEeecchhhhChHhHhheeEeeChhhCCCeeCchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999998863 357899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhh-CHHHHHHHHHHHhHHhhccccCChhhHHHHhchhcccccCCCC--ceecHHHHHHhhcCCCceEEEEeCCCHHH
Q 005370 396 NEIAE-NKEDYNKFYDAFSKNLKLGIHEDSQNRAKLADLLRYHSTKSSE--EFTSLKDYVTRMKEGQKDIYYITGESKKA 472 (699)
Q Consensus 396 ~~la~-d~e~y~~f~~~~~~~lK~G~~eD~~~~e~l~~lLrf~ss~~~~--~~~sL~eY~~rm~~~Q~~IyY~~~~~~~~ 472 (699)
.+||+ ||++|++||++||.+||+|+++|+.|+++|++||||+||.+++ +++||+||++|||++|+.|||++|+++++
T Consensus 361 ~~l~~~d~e~y~~f~~~f~~~lK~G~~~D~~~~~~l~~ll~f~ss~~~~~~~~~sL~eY~~rmk~~q~~IyY~t~~~~~~ 440 (559)
T 1y4s_A 361 EKLAKDDAEKYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAA 440 (559)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHTTSTTTCGGGHHHHHTTCEEBCSSCSSSSCCEETTSSSTTCCTTCSCCBEECCSSSHH
T ss_pred HHHHhcCHHHHHHHHHHHhHHhhhhhccCHHHHHHHHHhhEeeecCCCcCCCeeeHHHHHHhccccCceEEEEeCCCHHH
Confidence 99998 9999999999999999999999999999999999999998653 69999999999999999999999999999
Q ss_pred HhcChhhHHHHHcCCEEEEecCCchHHHHHHHhhccCceeEeccccCCCCCcchHHHHhhHHHhHHhHHHHHHHHHHHhC
Q 005370 473 VENSPFLERLKKKGYEVLYMVDAIDEYAVGQLKEYEGKKLVSATKEGLKLDDETEEEKKKKEEKKKSFENLCKTMKDILG 552 (699)
Q Consensus 473 ~~~sp~lE~~~~kG~eVL~l~dpiDE~~l~~L~~~~~~~f~~V~~~~~~l~~~~~~~~~~~~~~~~e~~~L~~~~k~~L~ 552 (699)
+++|||+|.|+++|||||||++||||+|+++|.+|+|++|++|+++++++++..+++++..++.++++++|++|||++|+
T Consensus 441 ~~~sp~~e~~~~kg~eVl~~~~~iDe~~~~~l~~~~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k~~L~ 520 (559)
T 1y4s_A 441 AKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLADEVDESAKEAEKALTPFIDRVKALLG 520 (559)
T ss_dssp HHTCSSSHHHHHTTCCCEECCSTTHHHHHHHCCCCSSSCCBCC-------------------------------------
T ss_pred HhhChHHHHHHhCCceEEEecChHHHHHHHHHHHhCCceEEecccccccccccchhhhhhhhHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999988652122333334456789999999999999
Q ss_pred CcccEEEEeecCCCCCEEEEeCCCCccHHHHHHHHHHh
Q 005370 553 DRVEKVVVSDRIVDSPCCLVTGEYGWSANMERIMKAQA 590 (699)
Q Consensus 553 ~~V~~V~vs~rL~dsP~~lv~~e~g~s~~mer~mka~~ 590 (699)
++|++|++|+||++||||+|++++|||++|+|||++|+
T Consensus 521 ~~v~~V~~s~rl~~sp~~~v~~~~~~~~~m~~~~~~~~ 558 (559)
T 1y4s_A 521 ERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAG 558 (559)
T ss_dssp --------------------------------------
T ss_pred CCceEEEEeccCCCCCEEEEeCCCCcCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999874
No 5
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics, stress response protein, chaperone, structural GE consortium, SGC; 2.50A {Leishmania major}
Probab=100.00 E-value=1.5e-120 Score=996.57 Aligned_cols=417 Identities=65% Similarity=1.111 Sum_probs=371.5
Q ss_pred cceeeeccCCCCccCCCCCCCHHHHHHHHHHhhcCccCCceeeeeecccceeeEEEEEecCCCCCCcchhhhcccceEEE
Q 005370 256 HEWQLINKQKPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTRKKMNNIKLY 335 (699)
Q Consensus 256 ~~~~~iN~~~piW~~~~~~v~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p~~~~~~~~~~~~i~LY 335 (699)
.+|++||+++|||+|+|++||+|||.+|||+++++|++||+|+||++||+++|+||||||+++||++|...+.++||+||
T Consensus 11 ~~~e~iN~~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~veg~~~~~~lLyiP~~ap~dl~~~~~~~~~ikLY 90 (444)
T 3hjc_A 11 RENLYFQGHKPLWTRDPKDVTKEEYAAFYKAISNDWEDPAATKHFSVEGQLEFRSIMFVPKRAPFDMFEPNKKRNNIKLY 90 (444)
T ss_dssp --------CCCGGGSCGGGCCHHHHHHHHHHTSSCCSCCSEEEEEEECSSSCEEEEEEECSSCCC----CCCCCCSEEEE
T ss_pred CCceeccCCCCCCCCCcccCCHHHHHHHHHHhcCCccCCceeEEEEecccceeeEEEecCCCCCcchhhhhhhcCCeeEE
Confidence 46999999999999999999999999999999999999999999999999999999999999999998743467999999
Q ss_pred eeceeccccccccccccccceeeeecCCCCCCccchhhhcccHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHhHH
Q 005370 336 VRRVFIMDNCEELIPEYLGFIKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYNKFYDAFSKN 415 (699)
Q Consensus 336 ~~rv~I~d~~~~llP~~l~Fv~GvVDS~dLplnvSRE~lq~~~~l~~i~~~l~~k~~~~L~~la~d~e~y~~f~~~~~~~ 415 (699)
||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.+||+|+++|++||++||.+
T Consensus 91 v~rVfI~D~~~ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~k~i~kKvl~~L~~la~d~e~Y~kFw~~fg~~ 170 (444)
T 3hjc_A 91 VRRVFIMDNCEDLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIVKKCLEMFDEVAENKEDYKQFYEQFGKN 170 (444)
T ss_dssp ETTEEEESCCGGGSCGGGTTCEEEEEESSCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred EeeeEeecchhhhchHHHhhheEEeccCCCCccccHHHhccCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCChhhHHHHhchhcccccCCCCceecHHHHHHhhcCCCceEEEEeCCCHHHHhcChhhHHHHHcCCEEEEecCC
Q 005370 416 LKLGIHEDSQNRAKLADLLRYHSTKSSEEFTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLYMVDA 495 (699)
Q Consensus 416 lK~G~~eD~~~~e~l~~lLrf~ss~~~~~~~sL~eY~~rm~~~Q~~IyY~~~~~~~~~~~sp~lE~~~~kG~eVL~l~dp 495 (699)
||+|+++|+.|+++|++||||+||.++++++||+||++|||++|+.|||++|+|++++++|||+|.|+++|||||||+||
T Consensus 171 lK~G~~eD~~~~~~l~~lLrF~ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kG~EVL~l~d~ 250 (444)
T 3hjc_A 171 IKLGIHEDTANRKKLMELLRFYSTESGEEMTTLKDYVTRMKAGQKSIYYITGDSKKKLETSPFIEQARRRGLEVLFMTEP 250 (444)
T ss_dssp HHHHHTTCGGGHHHHHHHCCBCBTTTTTSCBCHHHHHHTCCTTCCEEEEEECSCHHHHHTCGGGHHHHHHTCCEEEECSH
T ss_pred HhccccccHHHHHHHHHheEeeeecCCCCcCcHHHHHHhccccCceEEEEeCCCHHHHHhChHHHHHHhCCcEEEEeCCc
Confidence 99999999999999999999999987778999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHhhccCceeEeccccCCCCCcchHHHHhhHHHhHHhHHHHHHHHHHHhCCcccEEEEeecCCCCCEEEEeCC
Q 005370 496 IDEYAVGQLKEYEGKKLVSATKEGLKLDDETEEEKKKKEEKKKSFENLCKTMKDILGDRVEKVVVSDRIVDSPCCLVTGE 575 (699)
Q Consensus 496 iDE~~l~~L~~~~~~~f~~V~~~~~~l~~~~~~~~~~~~~~~~e~~~L~~~~k~~L~~~V~~V~vs~rL~dsP~~lv~~e 575 (699)
|||+|+++|.+|+|++|++|+++++++++ .+++++..++.++++++|++|+|++|+++|++|++|+||++||||||+++
T Consensus 251 iDe~~i~~L~e~~gk~f~sV~k~~l~l~~-~eeek~~~ee~~~~~~~L~~~~K~~L~~kV~~V~vS~RL~~sP~~lv~~e 329 (444)
T 3hjc_A 251 IDEYVMQQVKDFEDKKFACLTKEGVHFEE-SEEEKQQREEEKAACEKLCKTMKEVLGDKVEKVIVSERLSTSPCILVTSE 329 (444)
T ss_dssp HHHHHHHHCCEETTEEEEETTBSSCCCCC-CHHHHHHHHHHHHHTHHHHHHHHHHHGGGCSEEEECSSCSSSSEEEEBCS
T ss_pred hHHHHHHHHHHhCCceEEEeccccccchh-hhhhhhhhHHHHHHHHHHHHHHHHHhcCcceEEEecCCCCCCCeEEEcCC
Confidence 99999999999999999999999999876 44444445566778999999999999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHhcccCccccccCCCceEEeCCCChHHHHHHHhhhccCCchhHHHHHHHHHHHHHHhCCCCCCCHHH
Q 005370 576 YGWSANMERIMKAQALRDNSMSSYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDLTMLLFETALLTSGFSLDDPNT 655 (699)
Q Consensus 576 ~g~s~~mer~mka~~~~~~~~~~~~~~k~~LeiNp~HplIk~L~~~~~~~~~~~~~~~~~~~Lyd~AlL~~G~~l~d~~~ 655 (699)
+|||++|+|||++|++.++.+.+++.++++|||||+||||++|.++...+.+++.++++|++||+||+|++|++++||+.
T Consensus 330 ~g~s~~Merimka~~~~~~~~~~~~~~k~~LEINp~Hpli~~L~~~~~~d~~~~~~~~l~~lLyd~AlL~~G~~ledp~~ 409 (444)
T 3hjc_A 330 FGWSAHMEQIMRNQALRDSSMAQYMMSKKTMELNPRHPIIKELRRRVGADENDKAVKDLVFLLFDTSLLTSGFQLEDPTG 409 (444)
T ss_dssp SSBCHHHHHHHHHC--------CTTBCCCEEEECTTSHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHTCCCSCHHH
T ss_pred ccccHHHHHHHHHhcccccccccccccCeeEEECCCCHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCCCCcccHHH
Confidence 99999999999998876544445677899999999999999999987766677899999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcc
Q 005370 656 FGSRIHRMLKLGLSIDEE 673 (699)
Q Consensus 656 f~~r~~~ll~~~l~~~~~ 673 (699)
|++|+|+||..+||++++
T Consensus 410 f~~ri~~ll~~~l~~~~~ 427 (444)
T 3hjc_A 410 YAERINRMIKLGLSLDEE 427 (444)
T ss_dssp HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhcCCCcc
Confidence 999999999999999876
No 6
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer, hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Probab=100.00 E-value=2.2e-119 Score=982.54 Aligned_cols=413 Identities=74% Similarity=1.182 Sum_probs=359.6
Q ss_pred cCCCCccCCCCCCCHHHHHHHHHHhhcCccCCceeeeeecccceeeEEEEEecCCCCCCcchhhhcccceEEEeeceecc
Q 005370 263 KQKPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTRKKMNNIKLYVRRVFIM 342 (699)
Q Consensus 263 ~~~piW~~~~~~v~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p~~~~~~~~~~~~i~LY~~rv~I~ 342 (699)
.++|||+|+|++||+|||.+|||+++++|++||+|+||++||+++|+||||||+++||++|.....++||+||||||||+
T Consensus 2 ~~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~veg~~e~~~lLyiP~~ap~d~~~~~~~~~~ikLYvrrVfI~ 81 (448)
T 3q6m_A 2 ATKPIWTRNPDDITNEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFENRKKKNNIKLYVRRVFIM 81 (448)
T ss_dssp --CCGGGSCTTSCCHHHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCCC---------CCEEEEETTEEEE
T ss_pred CCCCCCCCChhhCCHHHHHHHHHHhcCCccCChheeeeccCCCeeeEEEEEccCCCchhhhhhhhhccceeEEeeeeEEe
Confidence 35799999999999999999999999999999999999999999999999999999999997544679999999999999
Q ss_pred ccccccccccccceeeeecCCCCCCccchhhhcccHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHhHHhhccccC
Q 005370 343 DNCEELIPEYLGFIKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYNKFYDAFSKNLKLGIHE 422 (699)
Q Consensus 343 d~~~~llP~~l~Fv~GvVDS~dLplnvSRE~lq~~~~l~~i~~~l~~k~~~~L~~la~d~e~y~~f~~~~~~~lK~G~~e 422 (699)
|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|.+||+|+++|++||++||.+||+|+++
T Consensus 82 d~~~ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~Irk~i~kKvl~~L~~la~d~e~Y~~f~~~fg~~lK~Gi~e 161 (448)
T 3q6m_A 82 DNCEELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNLVKKCLELFTELAEDKENYKKFYEQFSKNIKLGIHE 161 (448)
T ss_dssp SCCTTSSCGGGTTCEEEEEESCCC---------CCSHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhchhhhhheeEEeccCCCCccccHHhhccCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHhchhcccccCCCCceecHHHHHHhhcCCCceEEEEeCCCHHHHhcChhhHHHHHcCCEEEEecCCchHHHHH
Q 005370 423 DSQNRAKLADLLRYHSTKSSEEFTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLYMVDAIDEYAVG 502 (699)
Q Consensus 423 D~~~~e~l~~lLrf~ss~~~~~~~sL~eY~~rm~~~Q~~IyY~~~~~~~~~~~sp~lE~~~~kG~eVL~l~dpiDE~~l~ 502 (699)
|..|+++|++||||+||.++++++||+||++||+++|+.|||++|+|++++++|||+|.|+++|||||||++||||+|++
T Consensus 162 D~~n~~~l~~LLrF~Ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kG~EVL~l~d~iDe~~i~ 241 (448)
T 3q6m_A 162 DSQNRKKLSELLRYYTSASGDEMVSLKDYCTRMKENQKHIYYITGETKDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQ 241 (448)
T ss_dssp CGGGHHHHHTTCEEEETTTTTSCEEHHHHHHTCCSSCCEEEEEECSCHHHHHTSGGGHHHHHHTCCEEEECSTHHHHHTT
T ss_pred cHHHHHHHHHhhEeeeccCCCceEeHHHHHHhccccCceEEEEecCCHHHHHhChHHHHHHHCCCEEEEecCchHHHHHH
Confidence 99999999999999999876789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCceeEeccccCCCCCcchHHHHhhHHHhHHhHHHHHHHHHHHhCCcccEEEEeecCCCCCEEEEeCCCCccHHH
Q 005370 503 QLKEYEGKKLVSATKEGLKLDDETEEEKKKKEEKKKSFENLCKTMKDILGDRVEKVVVSDRIVDSPCCLVTGEYGWSANM 582 (699)
Q Consensus 503 ~L~~~~~~~f~~V~~~~~~l~~~~~~~~~~~~~~~~e~~~L~~~~k~~L~~~V~~V~vs~rL~dsP~~lv~~e~g~s~~m 582 (699)
+|.+|+|++|++|+++++++++ ++++++..++.+++|++|++|||++||++|++|++|+||++||||||++++|||++|
T Consensus 242 ~L~ef~gk~~~sV~k~~l~l~~-~eeek~~~ee~~~~~~~L~~~~K~~L~~kV~~V~vS~RL~~sP~~lv~~e~g~s~~M 320 (448)
T 3q6m_A 242 QLKEFEGKTLVSVTKEGLELPE-DEEEKKKQEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANM 320 (448)
T ss_dssp TCCEETTEEEEETTBSCCCCCC-CHHHHHHHHHHHHHSHHHHHHHHHHTGGGCSEEEECSSCSSSSEEEEECSSSCCHHH
T ss_pred HHHhhCCceEEEecccccCccc-chhhhhhHHHHHHHHHHHHHHHHHHhcCcceEEEecCCCCCCCeEEEeCCcchhHHH
Confidence 9999999999999999999976 444444445566789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCccccccCCCceEEeCCCChHHHHHHHhhhccCCchhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 005370 583 ERIMKAQALRDNSMSSYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDLTMLLFETALLTSGFSLDDPNTFGSRIHR 662 (699)
Q Consensus 583 er~mka~~~~~~~~~~~~~~k~~LeiNp~HplIk~L~~~~~~~~~~~~~~~~~~~Lyd~AlL~~G~~l~d~~~f~~r~~~ 662 (699)
+|||++|+.+++.+.+++.++++|||||+||||++|.++...+.+++.++++|++||+||+|++|++|+||+.|++|||+
T Consensus 321 erimkaq~~~d~~~~~~~~~kk~LEINp~Hpli~~L~~~~~~d~~~~~~~~~~~lLyd~AlL~~G~~l~DP~~f~~ri~~ 400 (448)
T 3q6m_A 321 ERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYR 400 (448)
T ss_dssp HHHCCC--------------CEEEEECTTCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCCSCHHHHHHHHHH
T ss_pred HHHHHHhhccccccccccccCceeEECCCCHHHHHHHHHhhcccchhHHHHHHHHHHHhHHhcCCCCCCCHHHHHHHHHH
Confidence 99999987655444456778999999999999999999887776778999999999999999999999999999999999
Q ss_pred HHHhcCCCCccccc
Q 005370 663 MLKLGLSIDEEENA 676 (699)
Q Consensus 663 ll~~~l~~~~~~~~ 676 (699)
||..+|+++.++..
T Consensus 401 ll~~~L~id~~~~~ 414 (448)
T 3q6m_A 401 MIKLGLGIDEDDPT 414 (448)
T ss_dssp HHHHTTC-------
T ss_pred HHHHhcCCCccccc
Confidence 99999999876433
No 7
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat shock protein, CO-chaperone, ATP-binding, heat shock; 3.0A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-115 Score=954.61 Aligned_cols=404 Identities=69% Similarity=1.097 Sum_probs=379.7
Q ss_pred CCCCccCCCCCCCHHHHHHHHHHhhcCccCCceeeeeecccceeeEEEEEecCCCCCCcchhhhcccceEEEeeceeccc
Q 005370 264 QKPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTRKKMNNIKLYVRRVFIMD 343 (699)
Q Consensus 264 ~~piW~~~~~~v~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p~~~~~~~~~~~~i~LY~~rv~I~d 343 (699)
++|||+|+|++||+|||.+|||+++++|++||+|+||++||+++|+||||||+++|+++|+....++||+||||||||+|
T Consensus 1 ~~plW~r~~~eit~EeY~eFYk~l~~d~~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~~~~~~~ikLYvrrVfI~d 80 (405)
T 2cge_A 1 TKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFESKKKKNNIKLYVRRVFITD 80 (405)
T ss_dssp CCCGGGSCGGGSCTTHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCSSCSSSSCCCCCCCEEEETTEEEES
T ss_pred CCCCcCCCcccCCHHHHHHHHHHhcCCCcCCeeEEEeccCCCcceeEEEEecCCCchhhhhhhhccCCeEEEEeeeEecC
Confidence 36999999999999999999999999999999999999999999999999999999999975545799999999999999
Q ss_pred cccccccccccceeeeecCCCCCCccchhhhcccHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHhHHhhccccCC
Q 005370 344 NCEELIPEYLGFIKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYNKFYDAFSKNLKLGIHED 423 (699)
Q Consensus 344 ~~~~llP~~l~Fv~GvVDS~dLplnvSRE~lq~~~~l~~i~~~l~~k~~~~L~~la~d~e~y~~f~~~~~~~lK~G~~eD 423 (699)
+|++|||+||+||||||||+|||||||||+||+|+++++||+.|++||+++|.++|+|+++|++||++||.+||+|+++|
T Consensus 81 ~~~~llP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~I~~~l~kkvl~~L~~la~~~e~y~kf~~~fg~~lK~G~~eD 160 (405)
T 2cge_A 81 EAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAEDSEQFEKFYSAFSKNIKLGVHED 160 (405)
T ss_dssp SCSSSSCGGGTTCEEEEEESSCCSSCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chhhhChHHHHHHhhcccccccCcccChhhhcccHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHhhhhhcchhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhchhcccccCCCCceecHHHHHHhhcCCCceEEEEeCCCHHHHhcChhhHHHHHcCCEEEEecCCchHHHHHH
Q 005370 424 SQNRAKLADLLRYHSTKSSEEFTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLYMVDAIDEYAVGQ 503 (699)
Q Consensus 424 ~~~~e~l~~lLrf~ss~~~~~~~sL~eY~~rm~~~Q~~IyY~~~~~~~~~~~sp~lE~~~~kG~eVL~l~dpiDE~~l~~ 503 (699)
+.|+++|++||||+||.++++++||+||++|||++|+.|||++|++++++++|||+|.|+++|||||||++||||+|+++
T Consensus 161 ~~~~~~l~~lLrF~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~s~~~~~~sp~~E~~k~kG~EVL~l~d~iDe~~i~~ 240 (405)
T 2cge_A 161 TQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQ 240 (405)
T ss_dssp TTTHHHHHTTCEECBSSCSSSCEEHHHHHHTCCTTCCSEEEEECSCHHHHHTCTTHHHHHHHTCCEEEECSHHHHHHHHH
T ss_pred HHHHHHHHHhheeeecCCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhcChHHHHHHhCCCEEEEecCchHHHHHHH
Confidence 99999999999999999766899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCceeEeccccCCCCCcchHHHHhhHHHhHHhHHHHHHHHHHHhCCcccEEEEeecCCCCCEEEEeCCCCccHHHH
Q 005370 504 LKEYEGKKLVSATKEGLKLDDETEEEKKKKEEKKKSFENLCKTMKDILGDRVEKVVVSDRIVDSPCCLVTGEYGWSANME 583 (699)
Q Consensus 504 L~~~~~~~f~~V~~~~~~l~~~~~~~~~~~~~~~~e~~~L~~~~k~~L~~~V~~V~vs~rL~dsP~~lv~~e~g~s~~me 583 (699)
|.+|+|++|++|+++ +++++ .+++++..++.++++++|++|+|++|+++|.+|++|+||+++|||+|++++|||++|+
T Consensus 241 L~e~~gk~~~sV~~~-l~l~~-~e~~~~~~~~~~~~~~~L~~~~k~~L~~~v~~V~~s~rl~~sP~~lv~~~~~~s~~me 318 (405)
T 2cge_A 241 LKEFEGKTLVDITKD-FELEE-TDEEKAEREKEIKEYEPLTKALKEILGDQVEKVVVSYKLLDAPAAIRTGQFGWSANME 318 (405)
T ss_dssp HCBSSSBEEESSBCC-CCSSS-STHHHHHHHHHHHHHHHHHHHHHHHHTTSCSEEEECSSCCSSSEEEEECSSSCCHHHH
T ss_pred HHHhCCceeEEcccc-ccccc-cchhhhhhhHhHHHHHHHHHHHHHHhcCcceEEEEEeccCCCCeEEEeccccccHHHH
Confidence 999999999999999 88876 3444444455677899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCccccccCCCceEEeCCCChHHHHHHHhhhcc-CCchhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 005370 584 RIMKAQALRDNSMSSYMSSKKTMEINPDNGIMEELRKRAEAD-KNDKSVKDLTMLLFETALLTSGFSLDDPNTFGSRIHR 662 (699)
Q Consensus 584 r~mka~~~~~~~~~~~~~~k~~LeiNp~HplIk~L~~~~~~~-~~~~~~~~~~~~Lyd~AlL~~G~~l~d~~~f~~r~~~ 662 (699)
|||++|+++++.+.+++..+++|||||+||||++|.++...+ .+++.++++|++||+||+|++|++++||+.|++|+|+
T Consensus 319 r~~k~~~~~~~~~~~~~~~k~~LeiNp~Hpli~~L~~~~~~~~~~~~~~~~~~~~Lyd~AlL~~G~~~~dp~~f~~r~~~ 398 (405)
T 2cge_A 319 RIMKAQALRDSSMSSYMSSKKTFEISPKSPIIKELKKRVDEGGAQDKTVKDLTKLLYETALLTSGFSLDEPTSFASRINR 398 (405)
T ss_dssp HHHHHHHTTSSSCCCCCCCCEEEEECTTSHHHHHHHHHHTTTGGGCHHHHHHHHHHHHHHHHHTTCCCSCHHHHHHHHHH
T ss_pred HHHHHhhccccccccccccCeeEEEcCCCHHHHHHHHhhhccccCHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHH
Confidence 999999876665555677899999999999999998876543 3467899999999999999999999999999999999
Q ss_pred HHHhcCC
Q 005370 663 MLKLGLS 669 (699)
Q Consensus 663 ll~~~l~ 669 (699)
||.++||
T Consensus 399 ll~~~l~ 405 (405)
T 2cge_A 399 LISLGLN 405 (405)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9998764
No 8
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces cerevisiae} SCOP: d.14.1.8
Probab=100.00 E-value=1.5e-90 Score=717.72 Aligned_cols=288 Identities=69% Similarity=1.122 Sum_probs=242.7
Q ss_pred CCCCccCCCCCCCHHHHHHHHHHhhcCccCCceeeeeecccceeeEEEEEecCCCCCCcchhhhcccceEEEeeceeccc
Q 005370 264 QKPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTRKKMNNIKLYVRRVFIMD 343 (699)
Q Consensus 264 ~~piW~~~~~~v~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p~~~~~~~~~~~~i~LY~~rv~I~d 343 (699)
++|||+|+|++||+|||.+|||+++++|++||+|+||++||+++|+||||||+++|+++|...+.++||+||||||||||
T Consensus 1 ~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~~H~~veg~~~~~~lLyiP~~ap~dl~~~~~~~~~ikLYvrrVfI~d 80 (288)
T 1hk7_A 1 TKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFESKKKKNNIKLYVRRVFITD 80 (288)
T ss_dssp CCCGGGSCTTTCCTTHHHHHHHHHHSCCSCCSEEEEEEECSSSCEEEEEEECSSCCCCCSSSCCCCCCCEEEETTEEEES
T ss_pred CCCcccCCchhCCHHHHHHHHHHhcCCcccCeeEEEEeccCCceeEEEEEecCCCcchhhhhhhccCCeEEEEeeeEeec
Confidence 36999999999999999999999999999999999999999999999999999999999986555799999999999999
Q ss_pred cccccccccccceeeeecCCCCCCccchhhhcccHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHhHHhhccccCC
Q 005370 344 NCEELIPEYLGFIKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYNKFYDAFSKNLKLGIHED 423 (699)
Q Consensus 344 ~~~~llP~~l~Fv~GvVDS~dLplnvSRE~lq~~~~l~~i~~~l~~k~~~~L~~la~d~e~y~~f~~~~~~~lK~G~~eD 423 (699)
+|++|||+||+||||||||+|||||||||+||+|+++++||+.|++|++++|.+||+|+++|++||++||.+||+|+++|
T Consensus 81 ~~~~llP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~I~k~i~kkvl~~l~~la~d~e~Y~kf~~~fg~~lK~Gi~eD 160 (288)
T 1hk7_A 81 EAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAEDSEQFEKFYSAFSKNIKLGVHED 160 (288)
T ss_dssp SCSSSSCGGGTTCEEEEEESSCCCC-------CCHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chhhhchHHHHHHhhcccccccCCcccHHHhccCHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHhHHHhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhchhcccccCCCCceecHHHHHHhhcCCCceEEEEeCCCHHHHhcChhhHHHHHcCCEEEEecCCchHHHHHH
Q 005370 424 SQNRAKLADLLRYHSTKSSEEFTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLYMVDAIDEYAVGQ 503 (699)
Q Consensus 424 ~~~~e~l~~lLrf~ss~~~~~~~sL~eY~~rm~~~Q~~IyY~~~~~~~~~~~sp~lE~~~~kG~eVL~l~dpiDE~~l~~ 503 (699)
..||++|++||||+||+++++++||+||++||+++|+.|||++|+|++++++|||+|.|+++|||||||+|||||+|+++
T Consensus 161 ~~nr~~l~~LLrf~ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kg~EVL~l~d~iDe~~i~~ 240 (288)
T 1hk7_A 161 TQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQ 240 (288)
T ss_dssp TTTHHHHHTTCCBEESSCSSSCBCHHHHHHHSCTTCCEEEEEECSSHHHHHTCGGGHHHHTTTCCCEEECSHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccCCCCcccHHHHHhhCcCCCceEEEEeCCCHHHHhcCHHHHHHHHCCCEEEEecCchHHHHHhh
Confidence 99999999999999998767899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCceeEeccccCCCCCcchHHHHhhHHHhHHhHHHHHHHHHHHhCC
Q 005370 504 LKEYEGKKLVSATKEGLKLDDETEEEKKKKEEKKKSFENLCKTMKDILGD 553 (699)
Q Consensus 504 L~~~~~~~f~~V~~~~~~l~~~~~~~~~~~~~~~~e~~~L~~~~k~~L~~ 553 (699)
|.+|+|++|++|+++ +++++ .+++++..++.+++|++|++|||++||+
T Consensus 241 L~e~~gk~~~sv~k~-~~l~~-~~eek~~~e~~~~~~~~L~~~~K~~L~~ 288 (288)
T 1hk7_A 241 LKEFEGKTLVDITKD-FELEE-TDEEKAEREKEIKEYEPLTKALKEILGD 288 (288)
T ss_dssp HCEETTEEEEETTTC-----------------------------------
T ss_pred hhhcCCceeeecccc-ccccc-hhhhhhhhHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999998 88865 3333344445567899999999999975
No 9
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli, hydrolase; 1.90A {Escherichia coli}
Probab=100.00 E-value=1.7e-88 Score=706.92 Aligned_cols=288 Identities=42% Similarity=0.742 Sum_probs=246.7
Q ss_pred CCCCccCCCCCCCHHHHHHHHHHhhcCccCCceeeeeecccceeeEEEEEecCCCCCCcchhhhcccceEEEeeceeccc
Q 005370 264 QKPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTRKKMNNIKLYVRRVFIMD 343 (699)
Q Consensus 264 ~~piW~~~~~~v~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p~~~~~~~~~~~~i~LY~~rv~I~d 343 (699)
++|||+|+|++||+|||.+|||+++++|++||+|+||++||+++|+||||||+++|+++|+. ..++||+||||||||+|
T Consensus 2 ~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~vEg~~~~~~lLyiP~~ap~dl~~~-~~~~~ikLYvrrVfI~D 80 (303)
T 2gq0_A 2 AQALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMWNR-DHKHGLKLYVQRVFIMD 80 (303)
T ss_dssp CCCGGGSCGGGSCHHHHHHHHHHHHTCCSCCSEEEEEEECSSSCEEEEEEECSSCCTTTTST-TCCCSEEEEETTEEEEE
T ss_pred CCCCcCCCcccCCHHHHHHHHHHHcCCccCcceeEEeccccccceeEEEEecCCCCchhhhh-hccCCeEEEEeceEeec
Confidence 46999999999999999999999999999999999999999999999999999999999874 35799999999999999
Q ss_pred cccccccccccceeeeecCCCCCCccchhhhcccHHHHHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHhHHhhccccC
Q 005370 344 NCEELIPEYLGFIKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAE-NKEDYNKFYDAFSKNLKLGIHE 422 (699)
Q Consensus 344 ~~~~llP~~l~Fv~GvVDS~dLplnvSRE~lq~~~~l~~i~~~l~~k~~~~L~~la~-d~e~y~~f~~~~~~~lK~G~~e 422 (699)
+|++|||+||+||||||||+|||||||||+||+|+++++||+.|++|++++|.+||+ ||++|++||++||.+||+|+++
T Consensus 81 ~~eeLlP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~Irk~l~kKvl~~L~~la~~d~e~Y~kF~~~fg~~lK~Gi~e 160 (303)
T 2gq0_A 81 DAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQMLEKLAKDDAEKYQTFWQQFGLVLKEGPAE 160 (303)
T ss_dssp EEGGGSCGGGTTCEEEEEESSSCTTCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTHHHH
T ss_pred chhhhchHHHHHhhcccccccCCcccchHhhcccHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhhhc
Confidence 999999999999999999999999999999999999999999999999999999998 8999999999999999999999
Q ss_pred ChhhHHHHhchhcccccCCC--CceecHHHHHHhhcCCCceEEEEeCCCHHHHhcChhhHHHHHcCCEEEEecCCchHHH
Q 005370 423 DSQNRAKLADLLRYHSTKSS--EEFTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLYMVDAIDEYA 500 (699)
Q Consensus 423 D~~~~e~l~~lLrf~ss~~~--~~~~sL~eY~~rm~~~Q~~IyY~~~~~~~~~~~sp~lE~~~~kG~eVL~l~dpiDE~~ 500 (699)
|+.|+++|++||||+||.++ ++++||+||++|||++|+.|||++|++++++++|||+|.|+++|||||||++||||+|
T Consensus 161 D~~nr~~l~~LLrF~Ss~~~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kG~EVL~l~d~iDe~~ 240 (303)
T 2gq0_A 161 DFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWM 240 (303)
T ss_dssp CGGGHHHHHTTCCBEETTTTCCCCCBCHHHHHHTCCTTCCSEEEEECSSHHHHHTCGGGHHHHHHTCCEEEECSTTHHHH
T ss_pred CHHHHHHHHHhheeeecCCCccCCeeeHHHHHHhcccCCceEEEEeCCCHHHHhcChHHHHHHHCCCeEEEeCchhHHHH
Confidence 99999999999999999865 4799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCceeEeccccCCCCCcchHHHHhhHHHhHHhHHHHHHHHHHHhCCccc--EEEEeecCCCCCEEEEe
Q 005370 501 VGQLKEYEGKKLVSATKEGLKLDDETEEEKKKKEEKKKSFENLCKTMKDILGDRVE--KVVVSDRIVDSPCCLVT 573 (699)
Q Consensus 501 l~~L~~~~~~~f~~V~~~~~~l~~~~~~~~~~~~~~~~e~~~L~~~~k~~L~~~V~--~V~vs~rL~dsP~~lv~ 573 (699)
+++|.+|+|++|++|++++++++++ + ++.||++|. +|.+|+||++||||+++
T Consensus 241 i~~L~e~~gk~f~sV~k~~l~l~~~-~--------------------~~~l~~~~~~~~~~~~~~~~s~~~~~~~ 294 (303)
T 2gq0_A 241 MNYLTEFDGKPFQSVSKVDESLEKL-A--------------------DGDLGTLVPRGSMAISDPNSSSVDKLAA 294 (303)
T ss_dssp TTTCCEETTEEEEETTC----------------------------------------------------------
T ss_pred HHHHHhcCCcceEEeeccccCcccc-c--------------------hhhhccccccCCccccCcCCcchHHHHH
Confidence 9999999999999999999988652 1 245677777 89999999999999976
No 10
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural genomics consortium, SGC, HE protein, chaperone; 2.28A {Homo sapiens} SCOP: d.14.1.8
Probab=100.00 E-value=1e-86 Score=683.56 Aligned_cols=263 Identities=73% Similarity=1.231 Sum_probs=249.9
Q ss_pred ccCCCCccCCCCCCCHHHHHHHHHHhhcCccCCceeeeeecccceeeEEEEEecCCCCCCcchhhhcccceEEEeeceec
Q 005370 262 NKQKPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTRKKMNNIKLYVRRVFI 341 (699)
Q Consensus 262 N~~~piW~~~~~~v~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p~~~~~~~~~~~~i~LY~~rv~I 341 (699)
|.++|||+|+|++||+|||.+|||+++++|++||+|+|+++||+++|+||||||+++||++|.....++||+||||||||
T Consensus 1 ~~~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~~~~~~~ikLYv~rVfI 80 (268)
T 3pry_A 1 MKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKLYVRRVFI 80 (268)
T ss_dssp -CCSCGGGSCGGGCCHHHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCCC--------CCCEEEEETTEEE
T ss_pred CCCCCCCCCChhhCCHHHHHHHHHHhcCCccCchheeeecccCCeeEEEEEEccCCCchhhhhhhhhcCCeeEEEEEEEe
Confidence 46789999999999999999999999999999999999999999999999999999999999754567999999999999
Q ss_pred cccccccccccccceeeeecCCCCCCccchhhhcccHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHhHHhhcccc
Q 005370 342 MDNCEELIPEYLGFIKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYNKFYDAFSKNLKLGIH 421 (699)
Q Consensus 342 ~d~~~~llP~~l~Fv~GvVDS~dLplnvSRE~lq~~~~l~~i~~~l~~k~~~~L~~la~d~e~y~~f~~~~~~~lK~G~~ 421 (699)
||+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|.+||+|+++|++||++||.+||+|++
T Consensus 81 ~d~~~ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~k~i~kkvl~~l~~la~d~e~Y~~f~~~fg~~lK~G~~ 160 (268)
T 3pry_A 81 MDSCDELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELAEDKENYKKFYEAFSKNLKLGIH 160 (268)
T ss_dssp ESCCGGGSCGGGTTCEEEEEESSSCSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHH
T ss_pred ecchhhhccchhhheEEEecCCCCCccccHHHhccCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHhchhcccccCCCCceecHHHHHHhhcCCCceEEEEeCCCHHHHhcChhhHHHHHcCCEEEEecCCchHHHH
Q 005370 422 EDSQNRAKLADLLRYHSTKSSEEFTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLYMVDAIDEYAV 501 (699)
Q Consensus 422 eD~~~~e~l~~lLrf~ss~~~~~~~sL~eY~~rm~~~Q~~IyY~~~~~~~~~~~sp~lE~~~~kG~eVL~l~dpiDE~~l 501 (699)
+|..|+++|++||||+||.++++++||+||++||+++|+.|||++|+|++++++|||+|.|+++|||||||+|||||+|+
T Consensus 161 eD~~~~~~l~~LLrf~ss~~~~~~~SL~eYv~rmke~Q~~IyYitg~s~~~~~~sp~~E~~k~kg~EVL~l~d~iDe~~i 240 (268)
T 3pry_A 161 EDSTNRRRLSELLRYHTSQSGDEMTSLSEYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCV 240 (268)
T ss_dssp HCGGGHHHHHHTCEEEETTTTTSCEEHHHHHHTSCTTCCEEEEECSCCHHHHHTCHHHHHHHTTTCCEEECCSTTHHHHH
T ss_pred CCHHHHHHHHHHheeeeccCCCccEeHHHHHHhcccCCceEEEEeCCCHHHHHhChHHHHHHHcCceEEEeCCchHHHHH
Confidence 99999999999999999987667999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCceeEeccccCCCCCc
Q 005370 502 GQLKEYEGKKLVSATKEGLKLDD 524 (699)
Q Consensus 502 ~~L~~~~~~~f~~V~~~~~~l~~ 524 (699)
++|++|+|++|++|++++++|++
T Consensus 241 ~~L~ef~gk~l~sv~k~~l~l~e 263 (268)
T 3pry_A 241 QQLKEFDGKSLVSVTKEGLELAE 263 (268)
T ss_dssp HHHCEETTEEEEETTCSSCCCCC
T ss_pred HHHHhcCCceeeecccccCCCcc
Confidence 99999999999999999999875
No 11
>1usu_A Heat shock protein HSP82; chaperone/complex, chaperone, activator, HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.14.1.8 PDB: 1usv_A
Probab=100.00 E-value=9.6e-87 Score=681.98 Aligned_cols=257 Identities=72% Similarity=1.149 Sum_probs=242.3
Q ss_pred ccCCCCccCCCCCCCHHHHHHHHHHhhcCccCCceeeeeecccceeeEEEEEecCCCCCCcchhhhcccceEEEeeceec
Q 005370 262 NKQKPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTRKKMNNIKLYVRRVFI 341 (699)
Q Consensus 262 N~~~piW~~~~~~v~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p~~~~~~~~~~~~i~LY~~rv~I 341 (699)
|+++|||+|+|++||+|||.+|||+++++|++||+|+||++||+++|+||||||+++|+++|+....++||+||||||||
T Consensus 1 N~~~plW~r~~~eit~EeY~eFYk~l~~d~~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~~~~~~~ikLYvrrVfI 80 (260)
T 1usu_A 1 GPTKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFESKKKKNNIKLYVRRVFI 80 (260)
T ss_dssp -CCCCGGGSCGGGCCHHHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCCTTTTCC----CCEEEEETTEEE
T ss_pred CCcCCcccCCcccCCHHHHHHHHHHhcCCccCCeeEEEeeccCcceeEEEEEecCCCchhhhhhhhccCCeEEEEeeeEe
Confidence 78899999999999999999999999999999999999999999999999999999999999755557999999999999
Q ss_pred cccccccccccccceeeeecCCCCCCccchhhhcccHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHhHHhhcccc
Q 005370 342 MDNCEELIPEYLGFIKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYNKFYDAFSKNLKLGIH 421 (699)
Q Consensus 342 ~d~~~~llP~~l~Fv~GvVDS~dLplnvSRE~lq~~~~l~~i~~~l~~k~~~~L~~la~d~e~y~~f~~~~~~~lK~G~~ 421 (699)
||+|++|||+||+||||||||+|||||||||+||+|+++++||+.|++|++++|.+||+|+++|++||++||.+||+|++
T Consensus 81 ~d~~~~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~I~~~l~kkvl~~l~~la~d~e~y~~f~~~fg~~lK~G~~ 160 (260)
T 1usu_A 81 TDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAEDSEQFEKFYSAFSKNIKLGVH 160 (260)
T ss_dssp ESCCTTSSCGGGTTCEEEEEESSCCSCC------CCHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhchHHHHHheeccccCCcCCccCHHHhcccHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhhhcchhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHhchhcccccCCCCceecHHHHHHhhcCCCceEEEEeCCCHHHHhcChhhHHHHHcCCEEEEecCCchHHHH
Q 005370 422 EDSQNRAKLADLLRYHSTKSSEEFTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLYMVDAIDEYAV 501 (699)
Q Consensus 422 eD~~~~e~l~~lLrf~ss~~~~~~~sL~eY~~rm~~~Q~~IyY~~~~~~~~~~~sp~lE~~~~kG~eVL~l~dpiDE~~l 501 (699)
+|+.|+++|++||||+||.++++++||+||++||+++|+.|||++|++++++++|||+|.|+++|||||||+|||||+|+
T Consensus 161 eD~~n~~~l~~lLrf~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~s~~~~~~sp~lE~~k~kg~EVL~l~d~iDe~~i 240 (260)
T 1usu_A 161 EDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKSVEKSPFLDALKAKNFEVLFLTDPIDEYAF 240 (260)
T ss_dssp HCTTTHHHHHTTCEEEETTEEEEEEEHHHHHHTSCTTCCEEEEEECSSHHHHHTCTTHHHHHHTTCCEEEECSHHHHHHH
T ss_pred cCHHHHHHHHHhhEeeecCCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhcChHHHHHHhCCCeEEEeCCchHHHHH
Confidence 99999999999999999987667999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCceeEecccc
Q 005370 502 GQLKEYEGKKLVSATKE 518 (699)
Q Consensus 502 ~~L~~~~~~~f~~V~~~ 518 (699)
++|++|+|++|++|+++
T Consensus 241 ~~L~e~~gk~~~sv~k~ 257 (260)
T 1usu_A 241 TQLKEFEGKTLVDITKD 257 (260)
T ss_dssp HHHCEETTEEEEETTCC
T ss_pred HHHHhhCCceEEecccc
Confidence 99999999999999987
No 12
>1y6z_A Heat shock protein, putative; chaperone, structural genomics, structural genom consortium, SGC, unknown function; 1.88A {Plasmodium falciparum}
Probab=100.00 E-value=8.5e-84 Score=664.33 Aligned_cols=258 Identities=41% Similarity=0.789 Sum_probs=231.5
Q ss_pred ccCCCCccCCCCCCCHHHHHHHHHHhhcCccCCceeeeeecccceeeEEEEEecCCCCCCcchh--hhcccceEEEeece
Q 005370 262 NKQKPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDT--RKKMNNIKLYVRRV 339 (699)
Q Consensus 262 N~~~piW~~~~~~v~~eey~~fyk~~~~~~~~pl~~~h~~~eg~~~~~~llyiP~~~p~~~~~~--~~~~~~i~LY~~rv 339 (699)
|+++|||+|+|++||+|||.+|||+++++|++||+|+|+++||+++|+||||||+++||++|.. ...++||+||||||
T Consensus 1 N~~~plW~r~~~eit~eeY~eFYk~l~~~~~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~~~~~~~~~ikLYvrrV 80 (263)
T 1y6z_A 1 GHQLPIWKQDEKSLTENDYYSFYKNTFKAYDDPLAYVHFNVEGQISFNSILYIPGSLPWELSKNMFDEESRGIRLYVKRV 80 (263)
T ss_dssp ----CGGGSCTTSCCHHHHHHHHHHHHTCCSCCSEEEEEEEESSSEEEEEEEECSSCCHHHHHCCC----CCEEEEETTE
T ss_pred CCcCCCcCCCcccCCHHHHHHHHHHhcCCccCcceeEEeccCCccceEEEEEecCCCchhhhhhhhHhhhcCeeEEEeee
Confidence 7889999999999999999999999999999999999999999999999999999999987652 23479999999999
Q ss_pred eccccccccccccccceeeeecCCCCCCccchhhhcccHHHHHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHhHHhhc
Q 005370 340 FIMDNCEELIPEYLGFIKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAE-NKEDYNKFYDAFSKNLKL 418 (699)
Q Consensus 340 ~I~d~~~~llP~~l~Fv~GvVDS~dLplnvSRE~lq~~~~l~~i~~~l~~k~~~~L~~la~-d~e~y~~f~~~~~~~lK~ 418 (699)
||||+|++|||+||+||||||||+|||||||||+||+|+++++||+.|++|++++|.+||+ ||++|++||++||.+||+
T Consensus 81 fI~d~~~~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~kkvl~~l~~la~~d~e~y~kf~~~fg~~lK~ 160 (263)
T 1y6z_A 81 FINDKFSESIPRWLTFLRGIVDSENLPLNVGREILQKSKMLSIINKRIVLKSISMMKGLKETGGDKWTKFLNTFGKYLKI 160 (263)
T ss_dssp EEESCGGGGSCGGGTTCEEEEEECC------------CTTHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH
T ss_pred EeecchhhhchHHHHHHeeccccccCCCccchhhhcccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhHHHcc
Confidence 9999999999999999999999999999999999999999999999999999999999998 899999999999999999
Q ss_pred cccCChhhHHHHhchhcccccCCCCceecHHHHHHhhcCCCceEEEEeCCCHHHHhcChhhHHHHHcCCEEEEecCCchH
Q 005370 419 GIHEDSQNRAKLADLLRYHSTKSSEEFTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLYMVDAIDE 498 (699)
Q Consensus 419 G~~eD~~~~e~l~~lLrf~ss~~~~~~~sL~eY~~rm~~~Q~~IyY~~~~~~~~~~~sp~lE~~~~kG~eVL~l~dpiDE 498 (699)
|+++|+.|+++|++||||+||.++++++||+||++|||++|+.|||++|++++++++|||+|.|+++|||||+|++||||
T Consensus 161 G~~eD~~~~~~l~~lLrf~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~~~~~~~~sp~~E~~~~kg~EVL~l~~~iDe 240 (263)
T 1y6z_A 161 GVVEDKENQEEIASLVEFYSINSGDKKTDLDSYIENMKEDQKCIYYISGENKKTAQNSPSLEKLKALNYDVLFSLEPIDE 240 (263)
T ss_dssp HHHHCGGGHHHHHTTCEECBTTTTTSCEEHHHHHHTCCTTCCSEEEEECSSHHHHHTCGGGHHHHHHTCCCEEECSHHHH
T ss_pred ccccCHHHHHHHHHhheeeeccCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhcCcHHHHHHhCCCeEEEeCCcHHH
Confidence 99999999999999999999987667999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH--hhccCceeEeccccC
Q 005370 499 YAVGQL--KEYEGKKLVSATKEG 519 (699)
Q Consensus 499 ~~l~~L--~~~~~~~f~~V~~~~ 519 (699)
+|+++| ++|+|++|++|++++
T Consensus 241 ~~i~~L~~~e~~gk~~~sv~k~~ 263 (263)
T 1y6z_A 241 FCLSSLTVNKYKGYEVLDVNKAD 263 (263)
T ss_dssp HHHHHHHHHCBTTBCEEETTCC-
T ss_pred HHHHHhhhhccCCceEEecCCCC
Confidence 999999 599999999999874
No 13
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=100.00 E-value=3.2e-59 Score=484.56 Aligned_cols=257 Identities=48% Similarity=0.820 Sum_probs=225.6
Q ss_pred ccccchhhcHHHHHHHHHhcCCCCchHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCC
Q 005370 4 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGI 83 (699)
Q Consensus 4 ~e~~~F~~d~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 83 (699)
.+++.||+|+++||++|+++||||+.+|||||||||+||++++|++++++|......+.+.|+|.++.++++|+|.|||+
T Consensus 23 ~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~~~~tLtI~DNGi 102 (281)
T 3peh_A 23 MESHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGI 102 (281)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECSC
T ss_pred cceeeehHHHHHHHHHHHHhccCChHHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcCCCcEEEEEeCCC
Confidence 47999999999999999999999999999999999999999999999999988777788999999999999999999999
Q ss_pred CCCHHHHHHHHhhhhccCchhHHHHHhc-CCCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccCceEEEEeC
Q 005370 84 GMTKADLVNNLGTIARSGTKEFMEALQA-GADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRD 162 (699)
Q Consensus 84 GMt~~el~~~l~~Ia~S~~~~f~~~~~~-~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~~~~~i~~~ 162 (699)
|||+++|.++|++||+||++.|+++++. +.+..+||||||||||+||||++|+|.|++.++.++.|++++++.|+|.++
T Consensus 103 GMt~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~vadkV~V~Sk~~~~~~~~Wes~g~g~fti~~~ 182 (281)
T 3peh_A 103 GMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNDDEQYIWESTADAKFTIYKD 182 (281)
T ss_dssp CCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGGTEEEEEEEEECTTSCCEEEEEETTSCEEEEEC
T ss_pred CCCHHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhccccCEEEEEEecCCCCEEEEEECCCccEEEEEc
Confidence 9999999999999999999999999875 456789999999999999999999999999777899999999999999986
Q ss_pred CCCCCCCCceEEEEEeccchhhcccHHHHHHHHHHhcCCCccceEeecccccccccCCCCCCCcc-ccccCCccccchHH
Q 005370 163 VSGEPLGRGTKMTLYLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEISDDEDDEPK-KEEEGDVEDVDEEK 241 (699)
Q Consensus 163 ~~~~~~~~GT~I~L~lk~~~~~~~~~~~l~~ii~~ys~fl~~pI~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 241 (699)
+.++..++||+|+|||+++..+|++.++|+++|++||+|++|||+|+.++..+++++++++++++ +++++++++++++
T Consensus 183 ~~~~~~~~GT~I~L~Lked~~e~le~~~ik~ivkkys~fi~~pI~l~~~k~~~~ev~~~~~~~~~~~~~~~~~e~~~~~- 261 (281)
T 3peh_A 183 PRGATLKRGTRISLHLKEDATNLLNDKKLMDLISKYSQFIQFPIYLLHENVYTEEVLADIAKDMVNDPNYDSVKVEETD- 261 (281)
T ss_dssp TTCSTTSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCCSCEEEEEEEEEEEEEEHHHHHHHTTCTTSSEEEECCCC-
T ss_pred CCCCCCCCCeEEEEEECCchhhhcCHHHHHHHHHHhhccCCcceEEeeeeeeeeccCcchhhhcccccccccccccccc-
Confidence 54456799999999999999999999999999999999999999999988777777655422211 2234445544433
Q ss_pred Hhhhcccccccccccceeeec
Q 005370 242 EKEGKKKKKIKEVSHEWQLIN 262 (699)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~iN 262 (699)
++++++|+++++.++|+.+|
T Consensus 262 -~~~~k~k~~~~~~~~~e~~n 281 (281)
T 3peh_A 262 -DPNKKTRTVEKKVKKWTLMN 281 (281)
T ss_dssp -CTTCCEEEEEEEEEEEEECC
T ss_pred -ccccCCcceEEEEEEeEecC
Confidence 23345677888889999998
No 14
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=100.00 E-value=8.3e-55 Score=441.96 Aligned_cols=205 Identities=51% Similarity=0.871 Sum_probs=186.3
Q ss_pred ccccchhhcHHHHHHHHHhcCCCCchHHHHHHHhcHHHHHHhhhhhhccCCCcc--------------------------
Q 005370 4 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKL-------------------------- 57 (699)
Q Consensus 4 ~e~~~F~~d~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~k~r~~~~~~~~~~-------------------------- 57 (699)
.|+++||+|+++||+||+++||||+++|||||||||+|||+|+| ++++++...
T Consensus 24 ~e~~~Fqae~~~ll~li~~slYs~keiFlRELISNasDA~dK~r-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (272)
T 3ied_A 24 VEKYNFKAEVNKVMDIIVNSLYTDKDVFLRELISNASDACDKKR-IILENNKLIKDAEVVTNEEIKNETEKEKTENVNES 102 (272)
T ss_dssp CEEEECCHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCC---------------------
T ss_pred cceechHHHHHHHHHHHHhhcCCCHHHHHHHHHHhhHHHHHHHH-HhccChhhhhccccccccccccccccccccccccc
Confidence 48999999999999999999999999999999999999999999 777765422
Q ss_pred -----------CCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHhcC-CCCCccccccchh
Q 005370 58 -----------DGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQAG-ADVSMIGQFGVGF 125 (699)
Q Consensus 58 -----------~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~~~~-~~~~~iG~FGIGf 125 (699)
....++.|+|.+|+++++|+|.|||+|||++||.++|++||+||++.|+++++.+ .+..+||||||||
T Consensus 103 ~~~~~~~~e~~~~~~~l~I~I~~Dk~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGF 182 (272)
T 3ied_A 103 TDKKENVEEEKNDIKKLIIKIKPDKEKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGF 182 (272)
T ss_dssp -----------CGGGGCCEEEEEETTTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGG
T ss_pred cccccccccccCCCCCcEEEEEEeCCCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCccccee
Confidence 2234579999999999999999999999999999999999999999999998765 5678999999999
Q ss_pred hheeeecCeEEEEEecCCCceEEEEEccCceEEEEeCC-----CCCCCCCceEEEEEeccchhhcccHHHHHHHHHHhcC
Q 005370 126 YSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRDV-----SGEPLGRGTKMTLYLKEDQLEYLEERRIKDLVKKHSE 200 (699)
Q Consensus 126 ~S~F~vad~v~V~T~~~~~~~~~w~~~~~~~~~i~~~~-----~~~~~~~GT~I~L~lk~~~~~~~~~~~l~~ii~~ys~ 200 (699)
||+||||++|+|+|+ .++.++.|+|++++.|+|.++. .++..++||+|+|||++++.+|++.++|+++|++||+
T Consensus 183 ySaFmVAdkV~V~Sk-~dd~~~~WeS~g~gsfti~~~~~~~~~~g~~~~~GT~I~L~Lked~~e~le~~~ik~likkys~ 261 (272)
T 3ied_A 183 YSSFLVSNRVEVYTK-KEDQIYRWSSDLKGSFSVNEIKKYDQEYDDIKGSGTKIILHLKEECDEYLEDYKLKELIKKYSE 261 (272)
T ss_dssp GGGGGTEEEEEEEEE-SSSCEEEEEECSSSEEEEEECTTCTTCC--CCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCT
T ss_pred heeeccCCEEEEEEc-CCCceEEEEECCCCCEEEEECcccccccCCCCCCCcEEEEEECCChHHhcCHHHHHHHHHHHHh
Confidence 999999999999999 6778999999999999999863 2346799999999999999999999999999999999
Q ss_pred CCccceEeec
Q 005370 201 FISYPIYLWT 210 (699)
Q Consensus 201 fl~~pI~~~~ 210 (699)
|++|||+++.
T Consensus 262 fi~~PI~l~~ 271 (272)
T 3ied_A 262 FIKFPIEIWS 271 (272)
T ss_dssp TCCSCEEECC
T ss_pred CCCCCeEEEe
Confidence 9999999975
No 15
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=100.00 E-value=2e-54 Score=449.96 Aligned_cols=258 Identities=53% Similarity=0.888 Sum_probs=202.7
Q ss_pred ccccchhhcHHHHHHHHHhcCCCCchHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCC
Q 005370 4 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGI 83 (699)
Q Consensus 4 ~e~~~F~~d~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 83 (699)
.++|.||+++++||++|+++||||+.+|||||||||+||++++|++++++++.....+.+.|+|.++.+..+|+|.|||+
T Consensus 5 ~e~~~Fqaei~~Ll~li~~~lYsn~eifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~l~I~DnGi 84 (269)
T 1qy5_A 5 SEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGV 84 (269)
T ss_dssp EEEECCCHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSC
T ss_pred ccceeehhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcCCceEEEEEECCC
Confidence 47999999999999999999999999999999999999999999999999987777778899999998889999999999
Q ss_pred CCCHHHHHHHHhhhhccCchhHHHHHhcC-----CCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccCceEE
Q 005370 84 GMTKADLVNNLGTIARSGTKEFMEALQAG-----ADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFT 158 (699)
Q Consensus 84 GMt~~el~~~l~~Ia~S~~~~f~~~~~~~-----~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~~~~~ 158 (699)
|||+++|.++|++||+||++.|+++++.+ .+...||+|||||||+||||++|+|.|++.++.++.|.+++ |.|+
T Consensus 85 GMt~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~va~~v~V~Sk~~~~~~~~w~s~g-g~~~ 163 (269)
T 1qy5_A 85 GMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFS 163 (269)
T ss_dssp CCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEECS-SCEE
T ss_pred CCCHHHHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhhccceEEEEEEecCCcEEEEEEeC-CEEE
Confidence 99999999999999999999999888653 46679999999999999999999999998777899999999 9999
Q ss_pred EEeCCCCCCCCCceEEEEEeccchhhcccHHHHHHHHHHhcCCCccceEeecccccccccCCCCCCCcc--ccccCCccc
Q 005370 159 VTRDVSGEPLGRGTKMTLYLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEISDDEDDEPK--KEEEGDVED 236 (699)
Q Consensus 159 i~~~~~~~~~~~GT~I~L~lk~~~~~~~~~~~l~~ii~~ys~fl~~pI~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 236 (699)
|.+.+.+....+||+|+|+|+++..+|++.++|+++|++||+|++|||+++.+++.+++++++++++++ ++++++.++
T Consensus 164 i~~~~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lvkkys~fi~~PI~l~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (269)
T 1qy5_A 164 VIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPMEEEEAAKEEKEDSDDEAA 243 (269)
T ss_dssp EEECTTCSCSSSEEEEEEEECGGGGGGGSHHHHHHHHHTTCTTCSSCEEEEEECC-------------------------
T ss_pred EEeccCCCcCCCCeEEEEEEcccchhhhhHHHHHHHHHhhhcccceeeEEeeeeeeeeccCccchhhhhhcccccccccc
Confidence 987532235689999999999999999999999999999999999999999987776666655432211 111111112
Q ss_pred cchHHHhhhcccccccccccceeeec
Q 005370 237 VDEEKEKEGKKKKKIKEVSHEWQLIN 262 (699)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~iN 262 (699)
++++++++++++++++++.++|+.+|
T Consensus 244 ~~~~~~~~~~k~k~~~~~~~~~e~~n 269 (269)
T 1qy5_A 244 VEEEEEEKKPKTKKVEKTVWDWELMN 269 (269)
T ss_dssp ----------------CCCEEEEECC
T ss_pred cccccccccccCCceEEEEeeeEecC
Confidence 22222222355677888889999998
No 16
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=100.00 E-value=1.5e-53 Score=434.17 Aligned_cols=208 Identities=80% Similarity=1.169 Sum_probs=194.8
Q ss_pred ccccchhhcHHHHHHHHHhcCCCCchHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCC
Q 005370 4 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGI 83 (699)
Q Consensus 4 ~e~~~F~~d~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 83 (699)
.++++||+|+++||++|+++||||+++|||||||||+||++++|+.+++++......+.+.|+|.+|.++++|+|.|||+
T Consensus 16 ~e~~~Fqae~~~ll~ll~~~lYs~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGi 95 (239)
T 3nmq_A 16 VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGI 95 (239)
T ss_dssp CEEEECCHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSC
T ss_pred ceeEeehhhHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEeCCccEEEEEeCCC
Confidence 37899999999999999999999999999999999999999999999999987777778999999999899999999999
Q ss_pred CCCHHHHHHHHhhhhccCchhHHHHHhcCCCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccCceEEEEeCC
Q 005370 84 GMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRDV 163 (699)
Q Consensus 84 GMt~~el~~~l~~Ia~S~~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~~~~~i~~~~ 163 (699)
|||++||.++|++||+||++.|+++++.+.+...||||||||||+||||++|+|.|++.++.++.|+|++++.|+|++++
T Consensus 96 GMt~edL~~~LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySaf~vadkv~V~Sk~~~~~~~~W~s~~~g~fti~~~~ 175 (239)
T 3nmq_A 96 GMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADH 175 (239)
T ss_dssp CCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSTTEEEEEECC
T ss_pred CCCHHHHHHHHHHHhcccchhhhhhhcccCCcccccccCcccccccccCCEEEEEEeeCCCceeEEEECCCCcEEEEecC
Confidence 99999999999999999999999988765677899999999999999999999999988788999999999999999853
Q ss_pred CCCCCCCceEEEEEeccchhhcccHHHHHHHHHHhcCCCccceEeeccc
Q 005370 164 SGEPLGRGTKMTLYLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEK 212 (699)
Q Consensus 164 ~~~~~~~GT~I~L~lk~~~~~~~~~~~l~~ii~~ys~fl~~pI~~~~~~ 212 (699)
+++..+||+|+|||+++..+|+++++|+++|++||+|++|||+++.++
T Consensus 176 -~~~~~~GT~I~L~lk~d~~e~l~~~~i~~lv~kys~fi~~pI~~~~~~ 223 (239)
T 3nmq_A 176 -GEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEK 223 (239)
T ss_dssp -SSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCTTCSSCEEECCCS
T ss_pred -CCcCCCCCEEEEEECCChHHhcCHHHHHHHHHHHHhccCCceEEeeee
Confidence 355689999999999999999999999999999999999999998755
No 17
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=100.00 E-value=2.3e-49 Score=407.07 Aligned_cols=215 Identities=80% Similarity=1.171 Sum_probs=192.7
Q ss_pred ccccchhhcHHHHHHHHHhcCCCCchHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCC
Q 005370 4 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGI 83 (699)
Q Consensus 4 ~e~~~F~~d~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 83 (699)
.+++.||+|+++|+++|+++||||+.+|||||||||+||++++|+.+++++......+.+.|+|.++.+..+|+|.|||+
T Consensus 37 ~e~~~Fqaei~~Ll~ll~~~lYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnG~ 116 (256)
T 3o0i_A 37 VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGI 116 (256)
T ss_dssp CEEEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSC
T ss_pred ceeEEeEeeHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcCCceEEEEecCCC
Confidence 37999999999999999999999999999999999999999999999999887777778999999998899999999999
Q ss_pred CCCHHHHHHHHhhhhccCchhHHHHHhcCCCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccCceEEEEeCC
Q 005370 84 GMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRDV 163 (699)
Q Consensus 84 GMt~~el~~~l~~Ia~S~~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~~~~~i~~~~ 163 (699)
|||++||..+|++||+|+++.|.+.++.+.+...||+||+||+|+|+||++|+|.|++.++.++.|++.+++.|++.+.+
T Consensus 117 GMt~edl~~~l~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~Vadkv~V~Sr~~~~~g~~w~s~gg~~~~v~~~~ 196 (256)
T 3o0i_A 117 GMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDT 196 (256)
T ss_dssp CCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCEEEEEECSTTEEEEEECC
T ss_pred CcCHHHHHHHHHhhccccccchhhhhcccCCccccCCCcchHHHhhccCCeEEEEEcCCCCceEEEEEeccceEEEeeCC
Confidence 99999999999999999999998877654567899999999999999999999999987778999999999999998853
Q ss_pred CCCCCCCceEEEEEeccchhhcccHHHHHHHHHHhcCCCccceEeecccccccccC
Q 005370 164 SGEPLGRGTKMTLYLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEIS 219 (699)
Q Consensus 164 ~~~~~~~GT~I~L~lk~~~~~~~~~~~l~~ii~~ys~fl~~pI~~~~~~~~~~~~~ 219 (699)
+...++||+|+|+||.+..+|++.++|+++|++||+|+++||+++.+++.+++++
T Consensus 197 -~~~~~~GT~I~l~LK~~~~e~~e~~~I~~iv~k~s~~l~~PI~~~~~~~~~~~~~ 251 (256)
T 3o0i_A 197 -GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVS 251 (256)
T ss_dssp -SSCCSSEEEEEEEECGGGGGGGCHHHHHHHHHHHCTTCSSCEEECCC--------
T ss_pred -CCCCCCCcEEEEEEcCcchhhccHHHHHHHHHHHHhhCCCCeEEeeeeeecccCC
Confidence 2456899999999999999999999999999999999999999998765544443
No 18
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=100.00 E-value=2.2e-48 Score=395.71 Aligned_cols=214 Identities=79% Similarity=1.173 Sum_probs=191.0
Q ss_pred ccccchhhcHHHHHHHHHhcCCCCchHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCC
Q 005370 4 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGI 83 (699)
Q Consensus 4 ~e~~~F~~d~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 83 (699)
.++++||+|+++||++|+++|||++.+|||||||||+||++++|+.+++++......+.+.|+|.++.+..+|+|.|||+
T Consensus 9 ~~~~~Fq~ei~~ll~ll~~~lYs~~~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~~~~~i~V~DnG~ 88 (228)
T 3t0h_A 9 VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGI 88 (228)
T ss_dssp CEEEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECSC
T ss_pred ccceEEEeeHHHHHHHHHHhhcCCcHHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeCCeeEEEEEeCCC
Confidence 47999999999999999999999999999999999999999999999998877666678899999988889999999999
Q ss_pred CCCHHHHHHHHhhhhccCchhHHHHHhcCCCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccCceEEEEeCC
Q 005370 84 GMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRDV 163 (699)
Q Consensus 84 GMt~~el~~~l~~Ia~S~~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~~~~~i~~~~ 163 (699)
||++++|..+|++||+|+++.|.+.++.+.+...||+||+||+|+|+||++|+|.|++.++.++.|++.+++.|++.+.+
T Consensus 89 GMs~edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~vad~v~V~Sr~~~~~~~~w~~~g~~~~~v~~~~ 168 (228)
T 3t0h_A 89 GMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDT 168 (228)
T ss_dssp CCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCEEEEEECSTTEEEEEECC
T ss_pred CCCHHHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhccCCEEEEEEecCCCCcEEEEEcCCceEEEeecC
Confidence 99999999999999999999888777544467899999999999999999999999987778999999999999998753
Q ss_pred CCCCCCCceEEEEEeccchhhcccHHHHHHHHHHhcCCCccceEeeccccccccc
Q 005370 164 SGEPLGRGTKMTLYLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEI 218 (699)
Q Consensus 164 ~~~~~~~GT~I~L~lk~~~~~~~~~~~l~~ii~~ys~fl~~pI~~~~~~~~~~~~ 218 (699)
+...++||+|+|+|+.+..+|++.++|+++|++||+|+++||+++.+++.++++
T Consensus 169 -~~~~~~GT~I~v~Lk~~~~E~~e~~~i~~iv~~~a~~l~~Pi~~~~~~~~~~~~ 222 (228)
T 3t0h_A 169 -GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEV 222 (228)
T ss_dssp -SSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHSTTCSSCEEECCC-------
T ss_pred -CCCCCCCcEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCeEEeecceeeccC
Confidence 245689999999999999999999999999999999999999998866444433
No 19
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=100.00 E-value=1.7e-47 Score=392.24 Aligned_cols=208 Identities=58% Similarity=0.961 Sum_probs=176.4
Q ss_pred ccccchhhcHHHHHHHHHhcCCCCchHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCC
Q 005370 4 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGI 83 (699)
Q Consensus 4 ~e~~~F~~d~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 83 (699)
.+++.||+++++|+++|+++||+++.+|||||||||+||++++|+++++++.+.....++.|+|.++.+..+|+|.|||+
T Consensus 9 ~~~~~F~~ei~~L~~ll~~~lys~~~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~~~~~i~I~DnG~ 88 (236)
T 2gqp_A 9 SEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGV 88 (236)
T ss_dssp TTEECCCHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSC
T ss_pred ccccchhHhHHHHHHHHHHhhcCCchHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcCCCCEEEEEECCc
Confidence 48999999999999999999999999999999999999999999999999887766677899999988889999999999
Q ss_pred CCCHHHHHHHHhhhhccCchhHHHHHhcC-----CCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccCceEE
Q 005370 84 GMTKADLVNNLGTIARSGTKEFMEALQAG-----ADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFT 158 (699)
Q Consensus 84 GMt~~el~~~l~~Ia~S~~~~f~~~~~~~-----~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~~~~~ 158 (699)
||+++||.++|++||+||++.|.++++.. .+...||+|||||||+||+|++|+|.|++.++.++.|++++ +.|+
T Consensus 89 GMt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~va~~v~V~Sr~~~~~~~~w~~~g-g~~~ 167 (236)
T 2gqp_A 89 GMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFS 167 (236)
T ss_dssp CCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEESS-SCEE
T ss_pred CCCHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhhcCCEEEEEEeCCCCceEEEEEeC-CEEE
Confidence 99999999999999999999888777643 45678999999999999999999999998766799999998 8999
Q ss_pred EEeCCCCCCCCCceEEEEEeccchhhcccHHHHHHHHHHhcCCCccceEeeccc
Q 005370 159 VTRDVSGEPLGRGTKMTLYLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEK 212 (699)
Q Consensus 159 i~~~~~~~~~~~GT~I~L~lk~~~~~~~~~~~l~~ii~~ys~fl~~pI~~~~~~ 212 (699)
+.+.+.+....+||+|+|+|+++..+|++.++|+++|++||+|++|||++++++
T Consensus 168 i~~~~~~~~~~~GT~I~l~Lk~~~~~~le~~~i~~lv~~~s~~i~~pI~~~~~~ 221 (236)
T 2gqp_A 168 VIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSK 221 (236)
T ss_dssp EEECTTCSCSSSEEEEEEEECGGGGGGGCHHHHHHHHHHHHTTCSSCEEEEEEC
T ss_pred EEeccCCCCCCCCeEEEEEECCcchhhChHHHHHHHHHHHhhhCCCceEEeeee
Confidence 987532234689999999999998999999999999999999999999998743
No 20
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=100.00 E-value=6.1e-45 Score=370.03 Aligned_cols=211 Identities=71% Similarity=1.099 Sum_probs=191.3
Q ss_pred CCcccccchhhcHHHHHHHHHhcCCCCchHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEe
Q 005370 1 MADTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVD 80 (699)
Q Consensus 1 m~~~e~~~F~~d~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~D 80 (699)
|+ .+++.||+++++|+++|+++||+++.+|||||||||+||++++|+.+++++......+.+.|+|..+.+..+|+|.|
T Consensus 1 ~~-~~~~~f~~~~~~l~~ll~~~lys~~~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~~~~~i~I~D 79 (220)
T 2wer_A 1 MA-SETFEFQAEITQLMSLIINTVYSNKEIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRD 79 (220)
T ss_dssp CC-CEEEECCHHHHHHHHHHHHHCCSSTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGGTEEEEEE
T ss_pred CC-CcceeeeecHHHHHHHHHHhccCCchHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECCCCCEEEEEE
Confidence 66 47999999999999999999999999999999999999999999999988876655667889988887778999999
Q ss_pred CCCCCCHHHHHHHHhhhhccCchhHHHHHhcCCCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccCceEEEE
Q 005370 81 SGIGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVT 160 (699)
Q Consensus 81 nGiGMt~~el~~~l~~Ia~S~~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~~~~~i~ 160 (699)
||+||++++|..+|++||+||++.|.++++...+...||+|||||||+|++|++|+|.|++.++.++.|.+++++.|++.
T Consensus 80 nG~GMs~edl~~~l~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~~~~~~~v~v~S~~~~~~~~~~~~~~~~~~~i~ 159 (220)
T 2wer_A 80 SGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVT 159 (220)
T ss_dssp CSCCCCHHHHHHHTTTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSSSEEEEE
T ss_pred cCCCCCHHHHHHHHHhHhcccchhHHHHhhccCCcccCCccchhHHHhhhcCCeeEEEEecCCCceeEEEeCCCCceEee
Confidence 99999999999999999999999998888755567899999999999999999999999987777999999999999998
Q ss_pred eCCCCCCCCCceEEEEEeccchhhcccHHHHHHHHHHhcCCCccceEeeccc
Q 005370 161 RDVSGEPLGRGTKMTLYLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEK 212 (699)
Q Consensus 161 ~~~~~~~~~~GT~I~L~lk~~~~~~~~~~~l~~ii~~ys~fl~~pI~~~~~~ 212 (699)
+.+......+||+|+|+|+++..+|++.++|++++++||.|+++||+++.++
T Consensus 160 ~~~~~~~~~~GT~I~l~Lk~~~~~~~e~~~i~~~v~~~a~~l~~PI~~~~~~ 211 (220)
T 2wer_A 160 LDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTK 211 (220)
T ss_dssp ECSSSCCCSSEEEEEEEECTTCGGGGCHHHHHHHHHHHCTTCCSCEEECCCC
T ss_pred cccCCCCCCCCeEEEEEECcchHHhCCHHHHHHHHHHHHhcCCCceEEEecc
Confidence 7532235689999999999988899999999999999999999999998754
No 21
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=100.00 E-value=1.5e-44 Score=375.42 Aligned_cols=209 Identities=80% Similarity=1.181 Sum_probs=189.7
Q ss_pred ccccchhhcHHHHHHHHHhcCCCCchHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCC
Q 005370 4 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGI 83 (699)
Q Consensus 4 ~e~~~F~~d~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 83 (699)
.+++.||+++++|+++|+++||+++.+|||||||||+||++++|+..++++........+.|.|..+.+..+|+|.|||+
T Consensus 45 ~e~~~F~~ei~~Ll~ll~~~lys~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~~~~I~I~DnG~ 124 (264)
T 1yc1_A 45 VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGI 124 (264)
T ss_dssp EEEEECCHHHHHHHHHHHHCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTTTEEEEEECSC
T ss_pred ceeEEehHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCCeeEEEEEECCc
Confidence 37899999999999999999999999999999999999999999998888876655677889998887788999999999
Q ss_pred CCCHHHHHHHHhhhhccCchhHHHHHhcCCCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccCceEEEEeCC
Q 005370 84 GMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRDV 163 (699)
Q Consensus 84 GMt~~el~~~l~~Ia~S~~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~~~~~i~~~~ 163 (699)
||++++|..+|++||+|+++.|.++++...+...||+|||||||+|++|++|+|.|++.++.++.|++.+++.|++.+.+
T Consensus 125 GMs~edL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~w~~~~~~~~~i~~~~ 204 (264)
T 1yc1_A 125 GMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDT 204 (264)
T ss_dssp CCCHHHHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHHHEEEEEEEEECTTSCCEEEEECSTTEEEEEECC
T ss_pred CCCHHHHHHHHHhhccccchhhhhhhccccchhhcCCCCCCccccccCCCEEEEEEecCCCceEEEEEcCCceEEEeecC
Confidence 99999999999999999999998888755567899999999999999999999999987677999999998999998743
Q ss_pred CCCCCCCceEEEEEeccchhhcccHHHHHHHHHHhcCCCccceEeecccc
Q 005370 164 SGEPLGRGTKMTLYLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKT 213 (699)
Q Consensus 164 ~~~~~~~GT~I~L~lk~~~~~~~~~~~l~~ii~~ys~fl~~pI~~~~~~~ 213 (699)
+....+||+|+|+|+++..+|++.++|+++|++||.|+++||+++++++
T Consensus 205 -~~~~~~GT~I~l~Lk~~~~e~~e~~~i~~lv~k~s~fi~~PI~~~~~~~ 253 (264)
T 1yc1_A 205 -GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKE 253 (264)
T ss_dssp -SSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCSSCEEECCCC-
T ss_pred -CCCCCCCeEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCEEEeeccc
Confidence 2346899999999999988999999999999999999999999998653
No 22
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=100.00 E-value=2e-40 Score=339.83 Aligned_cols=205 Identities=47% Similarity=0.796 Sum_probs=181.9
Q ss_pred ccccchhhcHHHHHHHHHhcCCCCchHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCC
Q 005370 4 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGI 83 (699)
Q Consensus 4 ~e~~~F~~d~~~ll~ll~~~LYs~~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGi 83 (699)
.|++.||+++++|+++|+++||+++.+|||||||||+||++++|+..+.++.+......+.|+|.++.++.+|+|.|||+
T Consensus 24 ~e~~~f~~~i~~L~~~l~~~lys~~~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~~~~~i~I~DnG~ 103 (235)
T 2ior_A 24 QETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGV 103 (235)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTTTEEEEEECSS
T ss_pred cccEEeehhHHHHHHHHHHhhcCCHHHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcCCceEEEEEECCC
Confidence 47899999999999999999999999999999999999999999998888776655666889998888888999999999
Q ss_pred CCCHHHHHHHHhhhhccCchhHHHHHhcC--CCCCccccccchhhheeeecCeEEEEEecCC---CceEEEEEccCceEE
Q 005370 84 GMTKADLVNNLGTIARSGTKEFMEALQAG--ADVSMIGQFGVGFYSAYLVAERVVVTTKHND---DEQYIWESQAGGSFT 158 (699)
Q Consensus 84 GMt~~el~~~l~~Ia~S~~~~f~~~~~~~--~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~---~~~~~w~~~~~~~~~ 158 (699)
||+++||..+|++||+|+++.|.++++.. .+...+|+||+||+|+|++|++|+|.|++.+ ..++.|.+++++.|.
T Consensus 104 GMs~edl~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~~~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~~ 183 (235)
T 2ior_A 104 GMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYT 183 (235)
T ss_dssp CCCHHHHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGGTEEEEEEEEECTTSCGGGEEEEEECSSSEEE
T ss_pred CCCHHHHHHHHHHHccccccchhhhhccccccccccCCCCChhHHHHHhCcCeEEEEEecCCCCCceeEEEEecCCCcEE
Confidence 99999999999999999998887655311 2356899999999999999999999999864 568999999989999
Q ss_pred EEeCCCCCCCCCceEEEEEeccchhhcccHHHHHHHHHHhcCCCccceEeecc
Q 005370 159 VTRDVSGEPLGRGTKMTLYLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTE 211 (699)
Q Consensus 159 i~~~~~~~~~~~GT~I~L~lk~~~~~~~~~~~l~~ii~~ys~fl~~pI~~~~~ 211 (699)
+.+. ....+||+|+|+|+++..+|++.++|+++|++||.|+++||+++.+
T Consensus 184 i~~~---~~~~~GT~V~v~Lk~~~~~~~e~~~i~~lv~~ya~~l~~PI~~~~~ 233 (235)
T 2ior_A 184 VADI---TKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKR 233 (235)
T ss_dssp EEEE---CCCSCEEEEEEEECTTCGGGGCHHHHHHHHHHHTTSCCSCEEEC--
T ss_pred EeeC---CCCCCCEEEEEEEcCchhhhCCHHHHHHHHHHHhccCCCCeEeccC
Confidence 9863 2458999999999998899999999999999999999999999754
No 23
>1sf8_A Chaperone protein HTPG; four helix bundle dimerization interface, exposed amphipathic helix, three stranded beta sheet; 2.60A {Escherichia coli} SCOP: d.271.1.1
Probab=99.97 E-value=1.7e-31 Score=246.52 Aligned_cols=114 Identities=26% Similarity=0.471 Sum_probs=104.4
Q ss_pred HHHHHHHHHhCCcccEEEEeecCCCCCEEEEeCCCCccHHHHHHHHHHhcccCccccccCCCceEEeCCCChHHHHHHHh
Q 005370 542 NLCKTMKDILGDRVEKVVVSDRIVDSPCCLVTGEYGWSANMERIMKAQALRDNSMSSYMSSKKTMEINPDNGIMEELRKR 621 (699)
Q Consensus 542 ~L~~~~k~~L~~~V~~V~vs~rL~dsP~~lv~~e~g~s~~mer~mka~~~~~~~~~~~~~~k~~LeiNp~HplIk~L~~~ 621 (699)
.+++|+|++|+++|.+|++|+||+++|||||++++|||++|+|||++|++. ++..+++|||||+||||++|.+.
T Consensus 12 ~~~~~~K~~L~dkV~~V~vS~RL~~sPa~lv~~e~g~s~~Merimka~~~~------~~~~k~~LEINp~HplIk~L~~~ 85 (126)
T 1sf8_A 12 SFIDRVKALLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAGQK------VPEVKYIFELNPDHVLVKRAADT 85 (126)
T ss_dssp CHHHHHHHHHGGGSSEEEECCCCSSCCEEEECCTTSCCHHHHHHHHTTTSC------CCCCCCEEEECTTSHHHHHHHHC
T ss_pred HHHHHHHHHhcCcccEEEEeecccCCCEEEEecCcccCHHHHHHHHHhccc------cccCCeeeeECCCCHHHHHHHHh
Confidence 479999999999999999999999999999999999999999999988532 34588999999999999999763
Q ss_pred hhccCCchhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q 005370 622 AEADKNDKSVKDLTMLLFETALLTSGFSLDDPNTFGSRIHRMLK 665 (699)
Q Consensus 622 ~~~~~~~~~~~~~~~~Lyd~AlL~~G~~l~d~~~f~~r~~~ll~ 665 (699)
. +++.++++|++|||+|+|++|++++||+.|++|+|++|.
T Consensus 86 ~----~~~~~k~l~~lLyd~AlL~~G~~leDp~~F~~Ri~~ll~ 125 (126)
T 1sf8_A 86 E----DEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLLV 125 (126)
T ss_dssp C----SHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHH
T ss_pred c----ChHHHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHh
Confidence 2 456799999999999999999999999999999999985
No 24
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.75 E-value=6.8e-18 Score=181.28 Aligned_cols=279 Identities=18% Similarity=0.225 Sum_probs=169.1
Q ss_pred hcCCCCchHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCC-CCEEEEEeCCCCCCHHHHHHHHhhhhcc
Q 005370 22 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKA-NKTLTIVDSGIGMTKADLVNNLGTIARS 100 (699)
Q Consensus 22 ~~LYs~~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~l~I~DnGiGMt~~el~~~l~~Ia~S 100 (699)
.....++..+|+|||+||+||+++ .|.|.++.+ ...|+|.|||+||+.+++...+..+++|
T Consensus 19 gevi~~~~~~v~ELi~NaidA~a~------------------~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~ts 80 (333)
T 1b63_A 19 GEVVERPASVVKELVENSLDAGAT------------------RIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATS 80 (333)
T ss_dssp HHHCSSHHHHHHHHHHHHHHTTCS------------------EEEEEEEGGGTSEEEEEECSCCCCGGGHHHHHSTTCCS
T ss_pred CCchhCHHHHHHHHHHHHHHCCCC------------------eEEEEEEeCCceEEEEEEcCCCcCHHHHHHhhhccccc
Confidence 455678999999999999999752 455555443 3689999999999999999999888876
Q ss_pred CchhHHHHHhcCCCCCccccccchhhheeeecCeEEEEEecCCC-ceEEEEEccCc-eEEEEeCCCCCCCCCceEEEEE-
Q 005370 101 GTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDD-EQYIWESQAGG-SFTVTRDVSGEPLGRGTKMTLY- 177 (699)
Q Consensus 101 ~~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~-~~~~w~~~~~~-~~~i~~~~~~~~~~~GT~I~L~- 177 (699)
....+. .+ .....+|++|+|+.|+++++ +++|.|+..++ .+|.|..+|+. .+.+.+. ..++||+|++.
T Consensus 81 K~~~~~-d~---~~~~~~G~~G~gl~si~~vs-~l~v~s~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~GT~V~v~~ 151 (333)
T 1b63_A 81 KIASLD-DL---EAIISLGFRGEALASISSVS-RLTLTSRTAEQQEAWQAYAEGRDMNVTVKPA----AHPVGTTLEVLD 151 (333)
T ss_dssp SCCSHH-HH---HTCCSSCCSSCHHHHHHTTS-EEEEEEECTTCSSEEEEEEETTTTEEEEEEE----CCCSEEEEEEES
T ss_pred Cccccc-hh---hhccccCccccchhhhhcCC-cEEEEEecCCCceEEEEEEcCCcceEeeecc----cCCCCCEEEEec
Confidence 322211 11 12356899999999999998 89999998653 57777766654 4455442 34799999998
Q ss_pred ec---cchhhcc-----cHHHHHHHHHHhcCCCc-cceEeecccccccccCCCCCCCccccccCCccccchHHHhhhccc
Q 005370 178 LK---EDQLEYL-----EERRIKDLVKKHSEFIS-YPIYLWTEKTTEKEISDDEDDEPKKEEEGDVEDVDEEKEKEGKKK 248 (699)
Q Consensus 178 lk---~~~~~~~-----~~~~l~~ii~~ys~fl~-~pI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (699)
|- +..+.|+ +..+|.+++++|+-.-| ..+.+...+
T Consensus 152 Lf~n~P~r~kflk~~~~e~~~i~~~~~~~al~~p~v~~~l~~ng------------------------------------ 195 (333)
T 1b63_A 152 LFYNTPARRKFLRTEKTEFNHIDEIIRRIALARFDVTINLSHNG------------------------------------ 195 (333)
T ss_dssp TTTTCHHHHHTCCCHHHHHHHHHHHHHHHHHHCTTCEEEEEETT------------------------------------
T ss_pred ccccchhhhhhhccHHHHHHHHHHHHHHHhccCCCcEEEEEECC------------------------------------
Confidence 11 2222232 23688999999996433 113332111
Q ss_pred ccccccccceeeeccCCCCccCCCCCCCHHHHHHHHHHhhcC-ccCCceeeeeecccceeeEEEEEecCCCCCCcchhhh
Q 005370 249 KKIKEVSHEWQLINKQKPIWLRKPEEITKEEYASFYKSLTND-WEDHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTRK 327 (699)
Q Consensus 249 ~~~~~~~~~~~~iN~~~piW~~~~~~v~~eey~~fyk~~~~~-~~~pl~~~h~~~eg~~~~~~llyiP~~~p~~~~~~~~ 327 (699)
+++|..++. .+...+.++...+++. ....+..++.. .+.+.+.|.+--|.... .
T Consensus 196 ----------------~~~~~~~~~-~~~~~~~~~i~~i~G~~~~~~li~i~~~-~~~~~v~G~i~~p~~~~-------~ 250 (333)
T 1b63_A 196 ----------------KIVRQYRAV-PEGGQKERRLGAICGTAFLEQALAIEWQ-HGDLTLRGWVADPNHTT-------P 250 (333)
T ss_dssp ----------------EEEEEECCC-CTTCCTHHHHHHHHCHHHHHHEEEEEEE-ETTEEEEEEEECGGGCC-------T
T ss_pred ----------------EEEEecCCC-CCCchHHHHHHHHhChhhHhheEEEEec-CCCEEEEEEEEcCcccc-------C
Confidence 011111111 0111233455555542 11223333322 24677888666566321 1
Q ss_pred c-ccceEEEeeceecccc---------cccccccc---ccceeeeecCCCCCCccc---hhhh-c-ccHHHHHHHHHHH
Q 005370 328 K-MNNIKLYVRRVFIMDN---------CEELIPEY---LGFIKGVVDSDDLPLNIS---REML-Q-QNKILKVIRKNLV 388 (699)
Q Consensus 328 ~-~~~i~LY~~rv~I~d~---------~~~llP~~---l~Fv~GvVDS~dLplnvS---RE~l-q-~~~~l~~i~~~l~ 388 (699)
. +..+-+|+|+.+|.+. ...+||.- +.++..-+|...+-.||. ||-. + +..++..|++.|.
T Consensus 251 ~~~~~~~~fvNgR~V~~~~l~~ai~~~y~~~l~~~~~P~~~l~l~~~p~~vDvNvhP~K~ev~f~~~~~v~~~i~~~i~ 329 (333)
T 1b63_A 251 ALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQSRLVHDFIYQGVL 329 (333)
T ss_dssp TGGGCEEEEETTEECCCHHHHHHHHHHHHHHSSSCCCCCEEEEEECCGGGEECTTSTTCCCCEETTHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCEEecCHHHHHHHHHHHHhhccCCCCcEEEEEEEeCchhccceECCCcCEEEeCCHHHHHHHHHHHHH
Confidence 2 4568999999999874 12445541 235566677777777873 3432 2 2234455555443
No 25
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.54 E-value=8e-15 Score=159.07 Aligned_cols=165 Identities=18% Similarity=0.178 Sum_probs=102.9
Q ss_pred HHHHHHHHHhcCCCC-----chHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcC-CCCEEEEEeCCCCCC
Q 005370 13 INQLLSLIINTFYSN-----KEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDK-ANKTLTIVDSGIGMT 86 (699)
Q Consensus 13 ~~~ll~ll~~~LYs~-----~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~-~~~~l~I~DnGiGMt 86 (699)
++.|-+.+++.+.+. +..+|+|||+||+||.+. .|.|.+.. +...|+|.|||+||+
T Consensus 15 I~~L~~~~~~~i~agevi~~~~~vl~eLv~NAiDA~a~------------------~I~I~i~~~~~~~I~V~DnG~Gi~ 76 (365)
T 1h7s_A 15 IKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGAT------------------NIDLKLKDYGVDLIEVSDNGCGVE 76 (365)
T ss_dssp --------------CEEECCHHHHHHHHHHHHHHTTCS------------------EEEEEEEGGGTSEEEEEECSCCCC
T ss_pred hccCCHHHHHHhcCCCchhhHHHHHHHHHHHHHHCCCC------------------EEEEEEEeCCcEEEEEEECCCCcC
Confidence 455555666666664 588999999999999641 45555433 346899999999999
Q ss_pred HHHHHHHHhhhhccCchhHHHHHhcCCCCCccccccchhhheeeecCeEEEEEecCC-CceEEEEEccCceEEEEeCCCC
Q 005370 87 KADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHND-DEQYIWESQAGGSFTVTRDVSG 165 (699)
Q Consensus 87 ~~el~~~l~~Ia~S~~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~-~~~~~w~~~~~~~~~i~~~~~~ 165 (699)
.+++...+..+++|.... ..........|.+|+|+.|++++| +++|+|+..+ ..++.|..+++|.+.....
T Consensus 77 ~~~l~~~f~~~~tsK~~~----~~dl~~i~s~G~rG~gl~si~~vs-~v~v~t~~~~~~~~~~~~~~~~G~~~~~~~--- 148 (365)
T 1h7s_A 77 EENFEGLTLKHHTSKIQE----FADLTQVETFGFRGEALSSLCALS-DVTISTCHASAKVGTRLMFDHNGKIIQKTP--- 148 (365)
T ss_dssp GGGSGGGGC--------------CCTTCSEEESSSSSHHHHHHHHS-EEEEEEECTTCSSCEEEEECTTSCEEEEEE---
T ss_pred HHHHHHHhhhcccccccc----ccchhcccccCCCCchhhhhhhhc-cEEEEEccCCCcceEEEEEcCCCceEeecc---
Confidence 999998888777653211 000011234799999999999999 9999999864 4589999875566554321
Q ss_pred CCCCCceEEEEE-ecc---ch-hhcc-----cHHHHHHHHHHhcCCCc
Q 005370 166 EPLGRGTKMTLY-LKE---DQ-LEYL-----EERRIKDLVKKHSEFIS 203 (699)
Q Consensus 166 ~~~~~GT~I~L~-lk~---~~-~~~~-----~~~~l~~ii~~ys~fl~ 203 (699)
....+||+|+++ |-. .. .+|+ +..+|.+++++|+-+.|
T Consensus 149 ~~~~~GT~V~v~~LF~n~P~R~k~flk~~~~e~~~i~~~v~~~al~~p 196 (365)
T 1h7s_A 149 YPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISA 196 (365)
T ss_dssp CCCCSEEEEEEESTTTTSHHHHHHHHHTHHHHHHHHHHHHHHHHHHCT
T ss_pred cCCCCCcEEEEeecccccchhhhhhccchHHHHHHHHHhhhhhhhcCC
Confidence 235799999998 321 11 1133 35789999999998765
No 26
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.1e-14 Score=157.81 Aligned_cols=153 Identities=18% Similarity=0.162 Sum_probs=105.4
Q ss_pred hcCCCCchHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEc-CCCCEEEEEeCCCCCCHHHHHHHHhhhhcc
Q 005370 22 NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPD-KANKTLTIVDSGIGMTKADLVNNLGTIARS 100 (699)
Q Consensus 22 ~~LYs~~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d-~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S 100 (699)
.....++..+|.|||+||+||++. .|.|.+. .+...|+|.|||+||+.+++...+...+.|
T Consensus 20 gevi~~~~~vv~eLv~NaiDA~a~------------------~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~ts 81 (367)
T 3h4l_A 20 GQVITDLTTAVKELVDNSIDANAN------------------QIEIIFKDYGLESIECSDNGDGIDPSNYEFLALKHYTS 81 (367)
T ss_dssp HHHCCSHHHHHHHHHHHHHHTTCS------------------EEEEEEETTTTSEEEEEECSCCCCGGGTTTTTCCEEC-
T ss_pred CCcccCHHHHHHHHHHHHHHCCCC------------------EEEEEEEeCCEEEEEEEECCCCcChhHhccceeccccC
Confidence 445677889999999999999752 4555553 334689999999999999988554433333
Q ss_pred CchhHHHHHhcCCCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccCceEEEEeCCCCCCCCCceEEEEE---
Q 005370 101 GTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLY--- 177 (699)
Q Consensus 101 ~~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~~~~~i~~~~~~~~~~~GT~I~L~--- 177 (699)
....+ +.+ ......|.+|+|++|++++| +++|+|+..+..++.|..+++|.+..... ...++||+|++.
T Consensus 82 K~~~~-~Dl---~~i~t~GfrGeaL~Si~avS-~l~V~sr~~~~~~~~~~~~~~G~~~~~~~---~~~~~GTtV~v~~LF 153 (367)
T 3h4l_A 82 KIAKF-QDV---AKVQTLGFRGEALSSLCGIA-KLSVITTTSPPKADKLEYDMVGHITSKTT---TSRNKGTTVLVSQLF 153 (367)
T ss_dssp ------------CCCCEEEETTHHHHHHHHSS-EEEEEEESSTTCEEEEEECTTCCEEEEEE---ECCSSEEEEEEESTT
T ss_pred cCCch-hhh---hhhhccCccchHHHHhhccC-EEEEEEEECCCCEEEEEEcCCCcEEeecc---ccCCCCeEEEEchhh
Confidence 21111 000 12345689999999999999 79999998666789999875565543321 235799999994
Q ss_pred ----------eccchhhcccHHHHHHHHHHhcCCCc
Q 005370 178 ----------LKEDQLEYLEERRIKDLVKKHSEFIS 203 (699)
Q Consensus 178 ----------lk~~~~~~~~~~~l~~ii~~ys~fl~ 203 (699)
++.... +..+|.+++++|+-.-|
T Consensus 154 ~n~P~R~k~flk~~~~---e~~~i~~~l~~~Al~~p 186 (367)
T 3h4l_A 154 HNLPVRQKEFSKTFKR---QFTKCLTVIQGYAIINA 186 (367)
T ss_dssp TTCHHHHHHHHTTHHH---HHHHHHHHHHHHHHHCT
T ss_pred ccCchhhhhhccchHH---HHHHHHHHHHHHHhhCC
Confidence 333323 33689999999986654
No 27
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.47 E-value=3.2e-13 Score=145.07 Aligned_cols=158 Identities=27% Similarity=0.280 Sum_probs=103.7
Q ss_pred HHHHHH-hcCCCCchHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCC-CCEEEEEeCCCCCCHHHHHHH
Q 005370 16 LLSLII-NTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKA-NKTLTIVDSGIGMTKADLVNN 93 (699)
Q Consensus 16 ll~ll~-~~LYs~~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~l~I~DnGiGMt~~el~~~ 93 (699)
+...|. ......+..+|.|||+||+||.+. .|.|.++.+ ...|+|.|||+||+.+++...
T Consensus 16 ~~~~Iaagevi~~~~~vv~eLv~NAidA~a~------------------~I~I~i~~~~~~~I~V~DnG~GI~~~~l~~~ 77 (348)
T 3na3_A 16 VVNRIAAGEVIQRPANAIKEMIENCLDAKST------------------SIQVIVKEGGLKLIQIQDNGTGIRKEDLDIV 77 (348)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHHTTCS------------------EEEEEEEGGGTSEEEEEECSCCCCGGGGGTT
T ss_pred HHHhhcccCcccCHHHHHHHHHHHHHHcCCC------------------EEEEEEEeCCEEEEEEEECCcCcChHHhhhh
Confidence 444444 445678899999999999999641 455554433 346999999999999998855
Q ss_pred HhhhhccCchhHHHHHhcCCCCCccccccchhhheeeecCeEEEEEecCC-CceEEEEEccCceE-EEEeCCCCCCCCCc
Q 005370 94 LGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHND-DEQYIWESQAGGSF-TVTRDVSGEPLGRG 171 (699)
Q Consensus 94 l~~Ia~S~~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~-~~~~~w~~~~~~~~-~i~~~~~~~~~~~G 171 (699)
+...+.|.-..+ +.+ ......|.+|+|+.|+.++| +++|+|+..+ ..++.|...++... .+.+. ..++|
T Consensus 78 ~~~~~tsK~~~~-~dl---~~i~s~GfrGeaL~Si~avs-~l~v~sr~~~~~~~~~~~~~~G~~~~~~~~~----~~~~G 148 (348)
T 3na3_A 78 CERFTTSKLQSF-EDL---ASISTYGFRGEALASISHVA-HVTITTKTADGKCAYRASYSDGKLKAPPKPC----AGNQG 148 (348)
T ss_dssp TSTTCCSSCCCC-------------CCTTCHHHHHHHSS-EEEEEEECTTCSSEEEEEEETTEESSCCEEE----CCCSE
T ss_pred hccccccccCcc-hhh---hccccCCcCChHHHHhhccc-EEEEEEEECCCCceEEEEEeCCEEeeeeeEe----cCCCC
Confidence 443333321111 000 11245799999999999998 8999999864 46889988754321 12331 35799
Q ss_pred eEEEEE------------eccchhhcccHHHHHHHHHHhcCCCc
Q 005370 172 TKMTLY------------LKEDQLEYLEERRIKDLVKKHSEFIS 203 (699)
Q Consensus 172 T~I~L~------------lk~~~~~~~~~~~l~~ii~~ys~fl~ 203 (699)
|+|++. ++.... +.++|.+++++|+-.-|
T Consensus 149 TtV~v~~LF~n~P~R~k~lk~~~~---e~~~i~~~l~~~Al~~p 189 (348)
T 3na3_A 149 TQITVEDLFYNIATRRKALKNPSE---EYGKILEVVGRYSVHNA 189 (348)
T ss_dssp EEEEEESTTTTCHHHHHTSCCHHH---HHHHHHHHHHHHHHHCT
T ss_pred cEEEECcccccCchhhhhccccHH---HHHHHHHHHHHHHhhCC
Confidence 999995 232222 34678999999986543
No 28
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=99.08 E-value=4.9e-10 Score=111.71 Aligned_cols=161 Identities=18% Similarity=0.193 Sum_probs=91.2
Q ss_pred CchHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHH--------HHHHhhhh
Q 005370 27 NKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADL--------VNNLGTIA 98 (699)
Q Consensus 27 ~~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el--------~~~l~~Ia 98 (699)
++..+++|||.||+||... . ....|.|.++. ++.|+|.|||.||+.+++ ...++..-
T Consensus 17 ~~~~~v~Elv~NsiDa~~~-g-------------~a~~I~V~i~~-~g~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~h 81 (201)
T 3fv5_A 17 RPNHLGQEVIDNSVDEALA-G-------------HAKRVDVILHA-DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLH 81 (201)
T ss_dssp STHHHHHHHHHHHHHHHHT-T-------------CCSEEEEEECT-TSCEEEEECSSCCCCSBCTTCSSBHHHHHHHCC-
T ss_pred ChhhhhHHHHHHHHHHHhc-C-------------CCcEEEEEEeC-CCEEEEEECCCCcCcccccccCcchhheeeeeec
Confidence 3478999999999999652 0 12367777764 358999999999999883 32233332
Q ss_pred ccCchhHHHHHhcCCCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccCceE--EEEeCCCCCCCCCceEEEE
Q 005370 99 RSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSF--TVTRDVSGEPLGRGTKMTL 176 (699)
Q Consensus 99 ~S~~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~~~~--~i~~~~~~~~~~~GT~I~L 176 (699)
.+|+ |.. .......|..|+|+.|+..++++++|+|+..+ ..+.....+ |.. .+...........||+|++
T Consensus 82 atsK--~~~----~~~~~s~GfrGeglssinalS~~l~v~t~~~g-~~~~~~~~~-G~~~~~~~~~g~~~~~~~GT~V~f 153 (201)
T 3fv5_A 82 AGGK--FSN----KNYQFSGGLHGVGISVVNALSKRVEVNVRRDG-QVYNIAFEN-GEKVQDLQVVGTCGKRNTGTSVHF 153 (201)
T ss_dssp --------------------------CHHHHHTEEEEEEEEEETT-EEEEEEEET-TEEEEEEEEEEECCTTCCEEEEEE
T ss_pred cccC--cCC----CcccccCcccceecchhhcccceEEEEEEecC-ceEEEEEeC-CEEcccceecccCCCCCCCeEEEE
Confidence 2332 211 11122479999999999999999999998654 344333333 322 2222110112479999999
Q ss_pred Eeccch--hhcccHHHHHHHHHHhcCCCc-cceEeec
Q 005370 177 YLKEDQ--LEYLEERRIKDLVKKHSEFIS-YPIYLWT 210 (699)
Q Consensus 177 ~lk~~~--~~~~~~~~l~~ii~~ys~fl~-~pI~~~~ 210 (699)
...... ..-.+...|.+.+++|+-.-| ..|.+..
T Consensus 154 ~Pdr~~F~~~~~e~~~i~~~l~~lA~l~pgv~~~l~~ 190 (201)
T 3fv5_A 154 WPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKD 190 (201)
T ss_dssp EECGGGSSCCCCCHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred EECHHHcCCCccCHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 743221 123567889999999984443 5566654
No 29
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=98.96 E-value=1.1e-09 Score=122.41 Aligned_cols=148 Identities=22% Similarity=0.257 Sum_probs=95.7
Q ss_pred hHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcC---CCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhH
Q 005370 29 EIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDK---ANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEF 105 (699)
Q Consensus 29 ~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~---~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f 105 (699)
..+|+|||+||+||+..-. ..+.+.|.+..+. +...|+|.|||+||+.+++...+.....+++.
T Consensus 34 ~qvl~nLv~NAida~~~gg-----------~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~-- 100 (471)
T 1mu5_A 34 YQTVRELIENSLDATDVHG-----------ILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY-- 100 (471)
T ss_dssp HHHHHHHHHHHHHTTGGGT-----------CCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CC--
T ss_pred HHHHHHHHHHHHHHhhcCC-----------CceEEEEEEEECCCcCcEEEEEEEECCCCCCHHHHHHHhccccccccc--
Confidence 4589999999999986310 0112344444322 23469999999999999998766544232221
Q ss_pred HHHHhcCCCCCccccccchhhheeeecCe-----EEEEEecCCCc-eEEEEEc------cCceEEEEeCCCCCCCCCceE
Q 005370 106 MEALQAGADVSMIGQFGVGFYSAYLVAER-----VVVTTKHNDDE-QYIWESQ------AGGSFTVTRDVSGEPLGRGTK 173 (699)
Q Consensus 106 ~~~~~~~~~~~~iG~FGIGf~S~F~vad~-----v~V~T~~~~~~-~~~w~~~------~~~~~~i~~~~~~~~~~~GT~ 173 (699)
......|.+|+|++++..+++. +.|.|+.+++. ++.|... ++..+...+.. .....+||+
T Consensus 101 -------~~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~-~~~~~~GT~ 172 (471)
T 1mu5_A 101 -------VNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVE-NTRGFHGTS 172 (471)
T ss_dssp -------CCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEEEEEEEEE-CCTTCCEEE
T ss_pred -------ccccCCCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEeccccccCCccccccccc-CCCCCCCEE
Confidence 1224568899999999999876 99999876443 5555421 22233333221 124579999
Q ss_pred EEEEeccchhhcccHHHHHHHHHHhc
Q 005370 174 MTLYLKEDQLEYLEERRIKDLVKKHS 199 (699)
Q Consensus 174 I~L~lk~~~~~~~~~~~l~~ii~~ys 199 (699)
|++.++.+..++ ..+|.+++++|+
T Consensus 173 V~v~l~~~~~e~--~~~I~~~l~~~a 196 (471)
T 1mu5_A 173 VAISIPGDWPKA--KSRIYEYIKRTY 196 (471)
T ss_dssp EEEEEECCHHHH--HHHHHHHHHHHH
T ss_pred EEEEEcCCcchH--HHHHHHHHHHHH
Confidence 999987653322 257889999887
No 30
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.89 E-value=3.8e-09 Score=115.46 Aligned_cols=159 Identities=17% Similarity=0.167 Sum_probs=99.4
Q ss_pred hHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHH-------HHhhhhccC
Q 005370 29 EIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVN-------NLGTIARSG 101 (699)
Q Consensus 29 ~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~-------~l~~Ia~S~ 101 (699)
...|+|||.||+|+..+ . ....|.|.++.+ ..|+|.|||.||+.+++.. .+.+....|
T Consensus 34 ~~~v~Elv~N~iD~a~~--~------------~~~~I~V~i~~~-~~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~~~ 98 (390)
T 1kij_A 34 HHLFKEILDNAVDEALA--G------------YATEILVRLNED-GSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSG 98 (390)
T ss_dssp HHHHHHHHHHHHHHHHT--T------------SCCEEEEEECTT-SCEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEE
T ss_pred HHHHHHHHHHHHHHhhh--C------------CCCEEEEEEEcC-CEEEEEEcCCCCCHHHhhhccccchhhheeeeeec
Confidence 45899999999999842 1 123677777654 5899999999999988753 222322333
Q ss_pred chhHHHHHhcCCCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccCc-eEEEEeCCCCCCCCCceEEEEEecc
Q 005370 102 TKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGG-SFTVTRDVSGEPLGRGTKMTLYLKE 180 (699)
Q Consensus 102 ~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~~-~~~i~~~~~~~~~~~GT~I~L~lk~ 180 (699)
.+ |. ........|..|+|+.++.++++.++|+|+..+ ..+.+....+. ...+..........+||+|++...
T Consensus 99 ~k-f~----~~~~~~s~G~~G~Gls~v~als~~~~v~t~~~g-~~~~~~~~~G~~~~~~~~~~~~~~~~~GT~V~f~Pd- 171 (390)
T 1kij_A 99 GK-FE----QGAYKVSGGLHGVGASVVNALSEWTVVEVFREG-KHHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFKPD- 171 (390)
T ss_dssp SG-GG----GSSCCCCSCSSTTSHHHHHHTEEEEEEEEEETT-EEEEEEEETTEEEEEEEEEEECGGGCCEEEEEEEEC-
T ss_pred cc-cc----CccccccCCCCCcceeeecccccceEEEEecCC-cEEEEEEcCCcccccceeeccccCCCCCcEEEEEEC-
Confidence 22 21 111122468999999999999999999998643 44444443332 112332211011479999999733
Q ss_pred chhhc----ccHHHHHHHHHHhcCCC-ccceEeec
Q 005370 181 DQLEY----LEERRIKDLVKKHSEFI-SYPIYLWT 210 (699)
Q Consensus 181 ~~~~~----~~~~~l~~ii~~ys~fl-~~pI~~~~ 210 (699)
...| ++...|.+.++.++-.- ..-|.++.
T Consensus 172 -~~~F~~~~~~~~~l~~rl~~~A~lnpgv~i~l~d 205 (390)
T 1kij_A 172 -PEIFGNLRFDPSKIRARLREVAYLVAGLKLVFQD 205 (390)
T ss_dssp -HHHHTTCCCCHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred -hHHhCCccccHHHHHHHHHHhcCcCCCcEEEEEe
Confidence 2222 46778999999888332 24455543
No 31
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=98.89 E-value=2.8e-09 Score=120.71 Aligned_cols=149 Identities=22% Similarity=0.252 Sum_probs=96.6
Q ss_pred hHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcC---CCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhH
Q 005370 29 EIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDK---ANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEF 105 (699)
Q Consensus 29 ~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~---~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f 105 (699)
..+|+|||+||+||+..- +..+.+.|.+..+. +...|+|.|||+||+.+++...|....++++.
T Consensus 33 ~qvl~NLV~NAida~~~g-----------g~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~-- 99 (530)
T 2zbk_B 33 YQTVRELIENSLDATDVH-----------GILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY-- 99 (530)
T ss_dssp HHHHHHHHHHHHTTTTTT-----------TCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCC--
T ss_pred HHHHHHHHHHHHHHHhcc-----------CCCeEEEEEEEECCCcCceEEEEEEECCCCCCHHHHHHHhccccccCCc--
Confidence 358999999999998631 00124556655433 33479999999999999998766544232221
Q ss_pred HHHHhcCCCCCccccccchhhheeeecC-----eEEEEEecCCCc-eEEEEE--c----cCceEEEEeCCCCCCCCCceE
Q 005370 106 MEALQAGADVSMIGQFGVGFYSAYLVAE-----RVVVTTKHNDDE-QYIWES--Q----AGGSFTVTRDVSGEPLGRGTK 173 (699)
Q Consensus 106 ~~~~~~~~~~~~iG~FGIGf~S~F~vad-----~v~V~T~~~~~~-~~~w~~--~----~~~~~~i~~~~~~~~~~~GT~ 173 (699)
......|.+|+|++++..+++ ++.|.|+.+++. ++.|.. . ++......+.. .....+||+
T Consensus 100 -------~~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~-~~~~~~GT~ 171 (530)
T 2zbk_B 100 -------VNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVE-NTRGFHGTS 171 (530)
T ss_dssp -------CCSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETTTTEEEEEEEEEEE-CCSSCCEEE
T ss_pred -------ccccCCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEecccccCCccccccccC-CCCCCCCcE
Confidence 122456899999999999887 699999875443 555442 1 21222223211 122579999
Q ss_pred EEEEeccchhhcccHHHHHHHHHHhcC
Q 005370 174 MTLYLKEDQLEYLEERRIKDLVKKHSE 200 (699)
Q Consensus 174 I~L~lk~~~~~~~~~~~l~~ii~~ys~ 200 (699)
|++.++.+..++ ...+.+++++|+-
T Consensus 172 V~v~l~~~~~e~--~~~i~~~l~~~Al 196 (530)
T 2zbk_B 172 VAISIPGDWPKA--KSRIYEYIKRTYI 196 (530)
T ss_dssp EEEEEECCHHHH--HHHHHHHHHHHHH
T ss_pred EEEEeccchhhH--HHHHHHHHHHHHH
Confidence 999987654332 2678888888864
No 32
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.80 E-value=2.8e-08 Score=108.54 Aligned_cols=167 Identities=18% Similarity=0.212 Sum_probs=104.7
Q ss_pred hcCCC---CchHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHH--------H
Q 005370 22 NTFYS---NKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKAD--------L 90 (699)
Q Consensus 22 ~~LYs---~~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~e--------l 90 (699)
-.+|= ++...+.|||.||+||.-. ..-..|.|.++.+ +.|+|.|||.||+.++ +
T Consensus 23 PgmYiGs~~~~~lv~ElvdNsiD~a~~--------------g~a~~I~V~i~~~-g~I~V~DnG~GIp~~~~~~~~~~~~ 87 (390)
T 1s16_A 23 PGMYTDTTRPNHLGQEVIDNSVDEALA--------------GHAKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAV 87 (390)
T ss_dssp GGGTSCTTSTHHHHHHHHHHHHHHHHT--------------TCCSEEEEEECTT-SCEEEEECSSCCCCSBCTTTCSBHH
T ss_pred CceeecCCcHHHHHHHHHHHHHHHHhc--------------CCCCEEEEEEecC-CEEEEEECCCCcCcccccccCcchh
Confidence 45672 2378999999999999641 0123677777654 4899999999999888 5
Q ss_pred HHHHhhhhccCchhHHHHHhcCCCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccCceE-EEEeCCCCCCCC
Q 005370 91 VNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSF-TVTRDVSGEPLG 169 (699)
Q Consensus 91 ~~~l~~Ia~S~~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~~~~-~i~~~~~~~~~~ 169 (699)
...|+..-.+|+ | ....-...-|..|+|..++-.++.+++|+|+..+ ..|......+..- .+..........
T Consensus 88 e~v~~~lhagsK--f----~~~~~~~sgGl~GvGls~vnalS~~l~v~~~r~g-~~~~~~~~~G~~~~~~~~~g~~~~~~ 160 (390)
T 1s16_A 88 ELILCRLHAGGK--F----SNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDG-QVYNIAFENGEKVQDLQVVGTCGKRN 160 (390)
T ss_dssp HHHHHCTTEESC--S----SSSSCSSCSCCSSCHHHHHHHTEEEEEEEEEETT-EEEEEEEETTEEEEEEEEEEECCTTC
T ss_pred hheeeeecccCC--c----CCCcccccCCccccchHHHHHhhcccEEEEEECC-cEEEEEEeCCcccccceecccccCCC
Confidence 655655433443 1 1111123568999999999999999999998643 4444444433111 122211011126
Q ss_pred CceEEEEEeccch--hhcccHHHHHHHHHHhcCCCc-cceEeec
Q 005370 170 RGTKMTLYLKEDQ--LEYLEERRIKDLVKKHSEFIS-YPIYLWT 210 (699)
Q Consensus 170 ~GT~I~L~lk~~~--~~~~~~~~l~~ii~~ys~fl~-~pI~~~~ 210 (699)
+||+|++...... ..-++...|.+.++.++-.-| .-|.+..
T Consensus 161 ~GT~V~f~Pd~~~F~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d 204 (390)
T 1s16_A 161 TGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKD 204 (390)
T ss_dssp CEEEEEEEECGGGSSCCSCCHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred CceEEEEEECccccCcccccHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 8999998833221 112467889999998875443 4555543
No 33
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=98.72 E-value=3.1e-07 Score=99.51 Aligned_cols=153 Identities=10% Similarity=0.069 Sum_probs=91.8
Q ss_pred chHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHH
Q 005370 28 KEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFME 107 (699)
Q Consensus 28 ~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~ 107 (699)
+...+.|||.||+||... . .-.+|.|.++.+ +.|+|.|||.||+. |+. | ..-.+|+ |
T Consensus 31 l~~~v~ElvdNsiDe~~~-g-------------~a~~I~V~i~~~-g~I~V~DnGrGIp~-e~v--~-~lhagsK--f-- 87 (369)
T 3cwv_A 31 LHHLVYFLLDVAYEEARR-G-------------ECRDVVLEVGGD-GSIALFCTSRTVTA-ENL--V-RVATGAG--F-- 87 (369)
T ss_dssp HHHHHHHHHHHHHHHHHT-T-------------CCSEEEEEECTT-SCEEEEEEESSCCH-HHH--H-HHHTTTT--G--
T ss_pred HHHHHHHHHhhhHhHHhh-C-------------CCCEEEEEEeCC-CEEEEEECCCCcCH-hHe--e-eeecCCC--c--
Confidence 356899999999999642 1 123677777654 48999999999999 544 2 2222232 2
Q ss_pred HHhcCCCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccCceE-----EEEeC-CCCCCCCCceEEEEEeccc
Q 005370 108 ALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSF-----TVTRD-VSGEPLGRGTKMTLYLKED 181 (699)
Q Consensus 108 ~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~~~~-----~i~~~-~~~~~~~~GT~I~L~lk~~ 181 (699)
......+..+.-| |.-|+-+++.+++|+|+..+ ..+..+..+ |.. ...+. ..+.....||+|++.. +
T Consensus 88 --~~~~~~~~y~vsG-Gls~vnalSs~l~v~t~r~g-~~~~~~~~~-G~~~~~~~~~~~l~~~g~~~~~GT~V~f~P--d 160 (369)
T 3cwv_A 88 --LGRPPGDGWGWDS-MLVVSLALSSRYQVDIWADG-RQWRVMGEH-GHPQGEGAAVTPMEPMPVSAERGVRVHFVP--D 160 (369)
T ss_dssp --GGSSCCCSTTTTS-SHHHHHHTEEEEEEEEEETT-EEEEEEEET-TEECTTCEEESSCCCCSSCCSEEEEEEEEE--C
T ss_pred --CCCcccccccccC-HHHHHHHhhceEEEEEEECC-CEEEEEEeC-CcccccccccCCceEecccCCCCCEEEEEE--C
Confidence 1100001122225 88788888899999998653 355444443 221 02211 1122357999999883 3
Q ss_pred hhhc----ccHHHHHHHHHHhcCCCc-cceEeec
Q 005370 182 QLEY----LEERRIKDLVKKHSEFIS-YPIYLWT 210 (699)
Q Consensus 182 ~~~~----~~~~~l~~ii~~ys~fl~-~pI~~~~ 210 (699)
..-| .+...|.+.++.++-.-| .-|.+..
T Consensus 161 ~~~F~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d 194 (369)
T 3cwv_A 161 ATIFEVLAFDRARLSRRCNELAALAPGLRVSFAD 194 (369)
T ss_dssp TTTCSCCCCCHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred HHHhCCccccHHHHHHHHHHHcCcCCCcEEEEEe
Confidence 2223 567889999999884432 4455543
No 34
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.70 E-value=7.9e-08 Score=104.96 Aligned_cols=158 Identities=15% Similarity=0.134 Sum_probs=100.9
Q ss_pred CchHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHH--------HHHHHhhhh
Q 005370 27 NKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKAD--------LVNNLGTIA 98 (699)
Q Consensus 27 ~~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~e--------l~~~l~~Ia 98 (699)
.+...+.|||.||+||... . .-..|.|.++.+ +.|+|.|||.||+.++ +.-.|+..-
T Consensus 34 gl~~lv~ElvdNsiDea~~-g-------------~a~~I~V~i~~~-g~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lh 98 (391)
T 1ei1_A 34 GLHHMVFEVVDNAIDEALA-G-------------HCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLH 98 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHT-T-------------CCCEEEEEECTT-SCEEEEECSSCCCCSBCTTTSSBHHHHHHHSTT
T ss_pred CHHHHHHHHHHhHHHHHhc-C-------------CCCEEEEEEeCC-CEEEEEECCCCcccCcccccCcchHHHhheecc
Confidence 4567899999999999642 1 123677777655 4999999999999887 443455343
Q ss_pred ccCchhHHHHHhcCCCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccCc---eEEEEeCCCCCCCCCceEEE
Q 005370 99 RSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGG---SFTVTRDVSGEPLGRGTKMT 175 (699)
Q Consensus 99 ~S~~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~~---~~~i~~~~~~~~~~~GT~I~ 175 (699)
.+|+ | ....-...-|..|+|.-|+-.++.+++|+|+..+ ..|..+...+. ...+.. ....+||+|+
T Consensus 99 agsK--f----~~~~~~vSgGl~GvGls~vnalS~~l~v~~~r~g-~~~~~~~~~G~~~~~l~~~~----~~~~~GT~V~ 167 (391)
T 1ei1_A 99 AGGK--F----DDNSYKVSGGLHGVGVSVVNALSQKLELVIQREG-KIHRQIYEHGVPQAPLAVTG----ETEKTGTMVR 167 (391)
T ss_dssp EESC--S----SSSSCSSCSCCSSCHHHHHHHTEEEEEEEEEETT-EEEEEEEETTEESSCCEEEE----ECSCCEEEEE
T ss_pred ccCC--c----CCCcccccCCccccchHHHHHhcCeEEEEEEeCC-cEEEEEEcCCcccccceecc----CcCCCccEEE
Confidence 3443 1 1111123569999999999999999999998643 44443433321 111111 1247999999
Q ss_pred EEeccch--h-hcccHHHHHHHHHHhcCCCc-cceEeec
Q 005370 176 LYLKEDQ--L-EYLEERRIKDLVKKHSEFIS-YPIYLWT 210 (699)
Q Consensus 176 L~lk~~~--~-~~~~~~~l~~ii~~ys~fl~-~pI~~~~ 210 (699)
+...... . .-++...|.+.++.++-.-| .-|.+..
T Consensus 168 f~Pd~~~F~~~~~~e~~~l~~rlr~lA~lnpgv~i~l~d 206 (391)
T 1ei1_A 168 FWPSLETFTNVTEFEYEILAKRLRELSFLDSGVSIRLRD 206 (391)
T ss_dssp EEECTTTCCSCCSCCHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred EEEChhhhCCccccCHHHHHHHHHHhcccCCCcEEEEEc
Confidence 8733221 1 22357888899988875443 5555553
No 35
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=98.65 E-value=1.3e-08 Score=116.83 Aligned_cols=156 Identities=19% Similarity=0.210 Sum_probs=96.3
Q ss_pred hHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCC---CEEEEEeCCCCCCHHHHHHHHhhhhccCchhH
Q 005370 29 EIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKAN---KTLTIVDSGIGMTKADLVNNLGTIARSGTKEF 105 (699)
Q Consensus 29 ~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~---~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f 105 (699)
..+|+|||.||+||+... .....|.|.+..++ ..|+|+|||.||+.+++...|.....++ + |
T Consensus 39 ~~Vl~ELV~NAIDa~~~~-------------g~~~~I~V~i~~~~~~~~~I~V~DnG~GIp~e~l~~iF~~~~ats-k-f 103 (621)
T 2q2e_B 39 ITTVKEAVDNALDACEEA-------------GILPDILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKLLYGS-R-F 103 (621)
T ss_dssp HHHHHHHHHHHHHHHTTT-------------SCSCEEEECCEEETTTEEEEEEECCSCCCCGGGHHHHHSCCCCC----C
T ss_pred HHHHHHHHHHHHHHHhhc-------------CCCcEEEEEEEECCCcEEEEEEEECCCCCCHHHHHHHhhhhccCC-c-c
Confidence 468999999999998631 11224555443322 4799999999999999987654332222 1 1
Q ss_pred HHHHhcCCCCCccccccchhhheeeecCe-----EEEEEecCCC-ceEEEEE-----ccCceEE-EEeCCCCCCCCCceE
Q 005370 106 MEALQAGADVSMIGQFGVGFYSAYLVAER-----VVVTTKHNDD-EQYIWES-----QAGGSFT-VTRDVSGEPLGRGTK 173 (699)
Q Consensus 106 ~~~~~~~~~~~~iG~FGIGf~S~F~vad~-----v~V~T~~~~~-~~~~w~~-----~~~~~~~-i~~~~~~~~~~~GT~ 173 (699)
. ......|..|+|+.++..++.. ++|.|+..+. .++.+.. .+.+... .... .....+||+
T Consensus 104 ~------~~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~g~~~~~~~~~~--~~~~~~GT~ 175 (621)
T 2q2e_B 104 H------ALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVR--DWFRPHGTQ 175 (621)
T ss_dssp C------CCC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSCSCCCCCEEEC--CCSCSSCCC
T ss_pred c------cccccCCCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhcccccccccccc--cCCCCCCCE
Confidence 0 0112348999999999988777 5999986543 5666664 2223221 1111 123579999
Q ss_pred EEEEeccchhhccc--HHHHHHHHHHhcCCCc-cceEeec
Q 005370 174 MTLYLKEDQLEYLE--ERRIKDLVKKHSEFIS-YPIYLWT 210 (699)
Q Consensus 174 I~L~lk~~~~~~~~--~~~l~~ii~~ys~fl~-~pI~~~~ 210 (699)
|++.++.+ |.. ...|.+.++.|+-.-| .-|.+..
T Consensus 176 V~~~f~~~---~~~~~~~~I~~~L~~lAllnpgv~I~L~d 212 (621)
T 2q2e_B 176 IELEMRAA---YVKGRRQSIYEYLKATAIVNPHARITLID 212 (621)
T ss_dssp EEEECSCC---CCCCSSSSSHHHHHHHHHHCCSCEEEECC
T ss_pred EEEEecCc---cchHHHHHHHHHHHHHHhhCCCCEEEEEE
Confidence 99998643 333 2557777777764432 4455544
No 36
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=98.64 E-value=1.3e-07 Score=95.33 Aligned_cols=155 Identities=15% Similarity=0.179 Sum_probs=92.9
Q ss_pred hHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHH--------HHHHhhhhcc
Q 005370 29 EIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADL--------VNNLGTIARS 100 (699)
Q Consensus 29 ~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el--------~~~l~~Ia~S 100 (699)
...++|||.||+||... . .-..|.|.++.+ ..|+|.|||.||+.+.. .-.|+..-.+
T Consensus 37 ~~lv~ElvdNsiDea~~-g-------------~~~~I~V~i~~~-g~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag 101 (220)
T 4duh_A 37 HHMVFEVVDNAIDEALA-G-------------HCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAG 101 (220)
T ss_dssp HHHHHHHHHHHHHHHHH-S-------------CCCEEEEEECTT-SCEEEEECSSCCCCSEETTTTEEHHHHHHHSTTCS
T ss_pred HHHHHHHHHHHHHHHhc-C-------------CCCEEEEEEeCC-CcEEEEECCcCcccccccccCcchhhheeeecccC
Confidence 67899999999999652 1 123677777654 58999999999998763 2234333333
Q ss_pred CchhHHHHHhcCCCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccCc---eEEEEeCCCCCCCCCceEEEEE
Q 005370 101 GTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGG---SFTVTRDVSGEPLGRGTKMTLY 177 (699)
Q Consensus 101 ~~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~~---~~~i~~~~~~~~~~~GT~I~L~ 177 (699)
|+ | ....-...-|..|+|.-++-+++.+++|+++..+ ..|..+...+. ...... .....||+|+..
T Consensus 102 ~K--f----d~~~yk~SgGlhGvG~svvNAlS~~l~v~v~r~g-~~~~~~f~~G~~~~~l~~~g----~~~~~GT~V~F~ 170 (220)
T 4duh_A 102 GK--F----DDNSYKVSGGLHGVGVSVVNALSQKLELVIQREG-KIHRQIYEHGVPQAPLAVTG----ETEKTGTMVRFW 170 (220)
T ss_dssp SC--C----CTTC--------CCCHHHHHHTEEEEEEEEEETT-EEEEEEEETTEESSSCEEEE----ECSCCEEEEEEE
T ss_pred CC--c----CCCccccccCccceecchhcccccceEEEEEECC-EEEEEEecCCcCcCCceecc----ccCCCCcEEEEE
Confidence 32 1 1011123569999999999999999999998654 33332222221 111111 235799999987
Q ss_pred eccch---hhcccHHHHHHHHHHhcCCCc--cceEeec
Q 005370 178 LKEDQ---LEYLEERRIKDLVKKHSEFIS--YPIYLWT 210 (699)
Q Consensus 178 lk~~~---~~~~~~~~l~~ii~~ys~fl~--~pI~~~~ 210 (699)
..+.. ..-++.+.|.+.++.++ |+. .-|.+++
T Consensus 171 Pd~~~F~~~~~~~~~~l~~rlrelA-~ln~gv~i~l~d 207 (220)
T 4duh_A 171 PSLETFTNVTEFEYEILAKRLRELS-FLNSGVSIRLRD 207 (220)
T ss_dssp ECTTTCCSSCSCCHHHHHHHHHHHH-HHCTTSEEEEEE
T ss_pred ECHHHhCCcccCCHHHHHHHHHHHH-hcCCCCEEEEEc
Confidence 44322 11246678888999888 443 4566654
No 37
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=98.60 E-value=2.1e-07 Score=94.20 Aligned_cols=157 Identities=17% Similarity=0.203 Sum_probs=96.1
Q ss_pred hHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHH-------HHHHHhhhhccC
Q 005370 29 EIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKAD-------LVNNLGTIARSG 101 (699)
Q Consensus 29 ~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~e-------l~~~l~~Ia~S~ 101 (699)
...++|+|.||+|+... + ....|.|.++.+ ..|+|.|||.||+.++ +.-.|+..-.+|
T Consensus 42 ~~~v~Eiv~NaiD~~~~------------g--~~~~I~V~i~~~-g~i~V~DnG~GIp~~~h~~~~~~~e~v~t~lhag~ 106 (226)
T 4emv_A 42 HHLVWEIVDNAVDEALS------------G--FGDRIDVTINKD-GSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGG 106 (226)
T ss_dssp HHHHHHHHHHHHHHHHT------------T--CCSEEEEEECTT-SCEEEEECSSCCCCSBCGGGCBHHHHHHHCBC---
T ss_pred HHHHHHHHHHHHHHHhc------------C--CCcEEEEEEeCC-CeEEEEEcCCCccccccccCceehheeEEeecccC
Confidence 46889999999999742 1 123677777654 5899999999999987 553444343333
Q ss_pred chhHHHHHhcCCCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccC----ceEE-EEeCCCCCCCCCceEEEE
Q 005370 102 TKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAG----GSFT-VTRDVSGEPLGRGTKMTL 176 (699)
Q Consensus 102 ~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~----~~~~-i~~~~~~~~~~~GT~I~L 176 (699)
+ |-.. .-...-|..|+|.-++=+++.+++|+++..+ ..|..+...+ .... +... .....||+|+.
T Consensus 107 K--fd~~----~yk~SgGlhGvG~svvNALS~~l~v~v~r~g-~~~~q~f~~Gg~~~~~l~~ig~~---~~~~~GT~V~F 176 (226)
T 4emv_A 107 K--FGQG----GYKTSGGLHGVGSSVVNALSSWLEVEITRDG-AVYKQRFENGGKPVTTLKKIGTA---LKSKTGTKVTF 176 (226)
T ss_dssp -----------------CGGGCCHHHHHHTEEEEEEEEEETT-EEEEEEEETTTEESSCSEEEEEC---CTTCCEEEEEE
T ss_pred c--cCcc----ceEeccccccccchhhhhcccceEEEEEeCC-cEEEEEECCCCEEcCCceEeccc---CCCCCCeEEEE
Confidence 3 3211 1133569999999999999999999998644 3333333322 1111 2221 12579999999
Q ss_pred Eeccch--hhcccHHHHHHHHHHhcCCC--ccceEeecc
Q 005370 177 YLKEDQ--LEYLEERRIKDLVKKHSEFI--SYPIYLWTE 211 (699)
Q Consensus 177 ~lk~~~--~~~~~~~~l~~ii~~ys~fl--~~pI~~~~~ 211 (699)
...... ..-++.+.|.+.++.++ |+ ..-|.++++
T Consensus 177 ~PD~~iF~~~~~~~~~l~~rlrelA-~ln~gv~i~l~de 214 (226)
T 4emv_A 177 MPDATIFSTTDFKYNTISERLNESA-FLLKNVTLSLTDK 214 (226)
T ss_dssp EECTTTCSCCCCCHHHHHHHHHHHH-HHHCSCEEEEEET
T ss_pred EECHHHcCCCCcCHHHHHHHHHHHh-hcCCCCEEEEEec
Confidence 754332 11247788888898888 44 356666653
No 38
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=98.59 E-value=1.4e-07 Score=103.13 Aligned_cols=161 Identities=13% Similarity=0.097 Sum_probs=96.5
Q ss_pred hHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHH--------HHHHHhhhhcc
Q 005370 29 EIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKAD--------LVNNLGTIARS 100 (699)
Q Consensus 29 ~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~e--------l~~~l~~Ia~S 100 (699)
...+.|||.||+||..... ....|.|.++.++..|+|.|||.||+.++ +.-.|+..-.+
T Consensus 54 ~~lv~EivdNsiDe~~~~g-------------~~~~I~V~i~~~~~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhag 120 (400)
T 1zxm_A 54 YKIFDEILVNAADNKQRDP-------------KMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTS 120 (400)
T ss_dssp HHHHHHHHHHHHHHHHHCT-------------TCCEEEEEEETTTTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEE
T ss_pred HHHHHHHHhhHHhHHhhcC-------------CCceEEEEEECCCCEEEEEECCCcccCccccccCccchhheeeeeccc
Confidence 4588999999999973211 12357777766558999999999999887 44445434334
Q ss_pred CchhHHHHHhcCCCCCccccccchhhheeeecCeEEEEEecC-CCceEEEEEccCce-EEEEeCCCCCCCCCceEEEEEe
Q 005370 101 GTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHN-DDEQYIWESQAGGS-FTVTRDVSGEPLGRGTKMTLYL 178 (699)
Q Consensus 101 ~~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~-~~~~~~w~~~~~~~-~~i~~~~~~~~~~~GT~I~L~l 178 (699)
|+ |-. ..-.-.-|..|+|.-++-+++.+++|+|+.. +...|......+.. -....... ....+||+|++..
T Consensus 121 sK--f~~----~~ykvSgGlhGvGlsvVnAlS~~l~v~v~~~~~g~~~~~~~~~G~~~~~~~~ig~-~~~~~GT~V~F~P 193 (400)
T 1zxm_A 121 SN--YDD----DEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMELKP-FNGEDYTCITFQP 193 (400)
T ss_dssp SC--CCG----GGCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEE-CCSCCEEEEEEEE
T ss_pred CC--CCC----CcccccCCccccceeeeEEeccceEEEEecCCCCcEEEEEEccCccccCcceecc-CCCCCccEEEEEE
Confidence 43 111 1112356999999999999999999999864 34444443333211 11111100 1135899999984
Q ss_pred ccchh--hcccHHH---HHHHHHHhcCCC-ccceEee
Q 005370 179 KEDQL--EYLEERR---IKDLVKKHSEFI-SYPIYLW 209 (699)
Q Consensus 179 k~~~~--~~~~~~~---l~~ii~~ys~fl-~~pI~~~ 209 (699)
.+... .-++.+. |.+.++.++-.- ..-|.+.
T Consensus 194 d~~iF~~~ef~~~~~~~l~~rlrelA~lnpgv~i~l~ 230 (400)
T 1zxm_A 194 DLSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLN 230 (400)
T ss_dssp CGGGGTCSSCCHHHHHHHHHHHHHHHHHSSSCEEEET
T ss_pred ChHHhCceeecHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 43221 1124455 567777766332 2445553
No 39
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=98.33 E-value=1.5e-06 Score=94.88 Aligned_cols=164 Identities=18% Similarity=0.207 Sum_probs=92.6
Q ss_pred hcCCC---CchHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHH--------
Q 005370 22 NTFYS---NKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADL-------- 90 (699)
Q Consensus 22 ~~LYs---~~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el-------- 90 (699)
-.+|- ++...+.|+|.||+|+.-. + ..-.|.|.++.+ +.|+|.|||.||+.+..
T Consensus 42 PgMYiGst~~~hlv~EivdNsiDea~a------------g--~~~~I~V~i~~d-gsI~V~DnGrGIPv~~h~~~~~~~~ 106 (408)
T 3lnu_A 42 PGMYTDTARPNHLAQEVIDNSVDEALA------------G--HAKQIEVTLYKD-GSCEVSDDGRGMPVDIHPEEKIPGV 106 (408)
T ss_dssp GGGTSCTTSTHHHHHHHHHHHHHHHHT------------T--SCCEEEEEECTT-SCEEEEECSSCCCCSBCTTTCSBHH
T ss_pred CccEECCCCcchhhHHHHHHHHHHhhc------------C--CCceEEEEEeCC-CeEEEEEcCCCCCcccccccCCcch
Confidence 45665 4578999999999999642 1 123677777644 58999999999998762
Q ss_pred HHHHhhhhccCchhHHHHHhcCCCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccC---ceEE-EEeCCCCC
Q 005370 91 VNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAG---GSFT-VTRDVSGE 166 (699)
Q Consensus 91 ~~~l~~Ia~S~~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~---~~~~-i~~~~~~~ 166 (699)
.-.|+.+-.+|+ |-. ..-...-|..|+|.-++=+++.+++|+++..+ ..|..+...+ .... +.. ..
T Consensus 107 e~i~t~lhaggK--fd~----~~ykvSgGlhGvG~svVNALS~~l~v~v~rdG-k~~~q~f~~G~~~~~l~~ig~---~~ 176 (408)
T 3lnu_A 107 ELILTRLHAGGK--FNN----RNYTFSGGLHGVGVSVVNALSTKVELFIKREG-SEHRMEFRDGNAASKLEVVGT---VG 176 (408)
T ss_dssp HHHHHCC--------------------------CHHHHHHTEEEEEEEEEETT-EEEEEEEETTEECSCCEEEEE---CC
T ss_pred heEEEecccCCC--cCC----CceeecCCccccccceehhccCeEEEEEEECC-EEEEEEECCCEECCCceEecc---Cc
Confidence 323433333333 311 11123569999999999999999999998654 3333232222 1111 222 11
Q ss_pred CCCCceEEEEEeccch--hhcccHHHHHHHHHHhcCCC-ccceEeec
Q 005370 167 PLGRGTKMTLYLKEDQ--LEYLEERRIKDLVKKHSEFI-SYPIYLWT 210 (699)
Q Consensus 167 ~~~~GT~I~L~lk~~~--~~~~~~~~l~~ii~~ys~fl-~~pI~~~~ 210 (699)
....||+|+....... ..-++.+.|...++.++-.. ..-|.+++
T Consensus 177 ~~~~GT~V~F~PD~~iF~~~~f~~~~l~~rlrelA~Ln~Gv~I~l~d 223 (408)
T 3lnu_A 177 KKNTGTRLRFWADPKYFDTPKFNVRALRHLLRAKAVLCPGLTVKLHD 223 (408)
T ss_dssp TTCCEEEEEEEECGGGSSCSCCCHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred CCCCCcEEEEEECHHHhCCCCcCHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 2479999998754432 11246788888888877443 24566654
No 40
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=98.08 E-value=2e-05 Score=78.20 Aligned_cols=141 Identities=16% Similarity=0.230 Sum_probs=82.7
Q ss_pred chHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHH
Q 005370 28 KEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFME 107 (699)
Q Consensus 28 ~~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~ 107 (699)
+...++|||.||+|+.-. . ....|.|.++.+ +.|+|.|||.||+.+ ..+.|+.... +
T Consensus 32 l~~~v~Elv~NsiD~~~a-g-------------~~~~I~V~i~~~-g~i~V~DnG~Gip~~-------~h~~~~~~~~-e 88 (198)
T 3ttz_A 32 LHHLVWEIVDNSIDEALA-G-------------YANQIEVVIEKD-NWIKVTDNGRGIPVD-------IQEKMGRPAV-E 88 (198)
T ss_dssp HHHHHHHHHHHHHHHHHT-T-------------SCCEEEEEEEGG-GEEEEEECSSCCCCS-------BCTTTSSBHH-H
T ss_pred hHHHHHHHHHHHHhHHhc-C-------------CCcEEEEEEeCC-CeEEEEECCCCcccc-------ccCcCCCccc-c
Confidence 367899999999998531 1 123566666544 499999999999975 2233332211 1
Q ss_pred HHhcCCCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccCce-EEEEeCCCCCCCCCceEEEEEeccchhhc-
Q 005370 108 ALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGS-FTVTRDVSGEPLGRGTKMTLYLKEDQLEY- 185 (699)
Q Consensus 108 ~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~~~-~~i~~~~~~~~~~~GT~I~L~lk~~~~~~- 185 (699)
.+ |+ .-++=.++.+++|+|+..+ ..|..+...+.. ..+... +.....||+|+.... ..-|
T Consensus 89 ---------~i--~t--~SvVNALS~~l~v~v~r~g-~~~~~~f~~G~~~~~l~~i--~~~~~~GT~V~F~Pd--~~iF~ 150 (198)
T 3ttz_A 89 ---------VI--LT--SSVVNALSQDLEVYVHRNE-TIYHQAYKKGVPQFDLKEV--GTTDKTGTVIRFKAD--GEIFT 150 (198)
T ss_dssp ---------HH--HH--TCHHHHTEEEEEEEEEETT-EEEEEEEETTEESSCCEEE--EECSCCEEEEEEEEC--TTTCC
T ss_pred ---------cc--ce--eEehhhhcCeEEEEEEECC-cEEEEEEeCCEECCCceec--cCCCCCCcEEEEEEC--HHHhc
Confidence 11 22 2233446789999997654 334333332210 011111 123479999998733 3233
Q ss_pred ----ccHHHHHHHHHHhcCCCc--cceEeec
Q 005370 186 ----LEERRIKDLVKKHSEFIS--YPIYLWT 210 (699)
Q Consensus 186 ----~~~~~l~~ii~~ys~fl~--~pI~~~~ 210 (699)
++.+.|.+.++.++ |+. .-|.++.
T Consensus 151 ~~~~~~~~~l~~rlrelA-~ln~gv~i~l~d 180 (198)
T 3ttz_A 151 ETTVYNYETLQQRIRELA-FLNKGIQITLRD 180 (198)
T ss_dssp SCCCCCHHHHHHHHHHHH-HHSTTCEEEEEE
T ss_pred cCCccCHHHHHHHHHHHh-hcCCCCEEEEEe
Confidence 57788999999988 443 4556654
No 41
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=97.98 E-value=2.8e-05 Score=85.39 Aligned_cols=158 Identities=16% Similarity=0.187 Sum_probs=92.9
Q ss_pred HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHH--------HHHHhhhhccC
Q 005370 30 IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADL--------VNNLGTIARSG 101 (699)
Q Consensus 30 i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el--------~~~l~~Ia~S~ 101 (699)
..+.|+|.||+|+..... .-..|.|.++.++..|+|.|||.||+.+.. +-.|+.+-.+|
T Consensus 67 ~lv~EivdNaiDe~~~~g-------------~~~~I~V~i~~d~~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGg 133 (418)
T 1pvg_A 67 KIFDEILVNAADNKVRDP-------------SMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSS 133 (418)
T ss_dssp HHHHHHHHHHHHHHHHCT-------------TCCEEEEEEETTTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEES
T ss_pred HHHHHHHhCHHHHHHhcC-------------CCCEEEEEEECCCCEEEEEECCCcccCcccccCCcccceEEEEEEeccc
Confidence 378999999999974211 123677777766689999999999987652 22344443444
Q ss_pred chhHHHHHhcCCCCCccccccchhhheeeecCeEEEEEec-CCCceE--EEEEc---cCceEEEEeCCCCCCCCCceEEE
Q 005370 102 TKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKH-NDDEQY--IWESQ---AGGSFTVTRDVSGEPLGRGTKMT 175 (699)
Q Consensus 102 ~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~-~~~~~~--~w~~~---~~~~~~i~~~~~~~~~~~GT~I~ 175 (699)
+-. .+.-.-.-|..|+|.-.+=+++.+++|+++. .++..| .|+.. .... .+... .....||+|+
T Consensus 134 Kfd------~~~ykvSGGLhGVG~SvVNALS~~l~V~v~r~rdGk~y~q~f~~G~~~~~~p-~i~~~---~~~~tGT~V~ 203 (418)
T 1pvg_A 134 NYD------DDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPP-KITSY---KKGPSYTKVT 203 (418)
T ss_dssp CCC------TTSCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCC-EEEEC---CSSCCEEEEE
T ss_pred ccC------CCceeccCCccceeeeeeeeccceEEEEEEECCCCcEEEEEEEcCCCccCCC-eeccc---CCCCCceEEE
Confidence 311 0111234599999998889999999999985 344434 33321 0111 23321 1236899999
Q ss_pred EEeccchh--hcccHHH---HHHHHHHhcCCC-ccceEeec
Q 005370 176 LYLKEDQL--EYLEERR---IKDLVKKHSEFI-SYPIYLWT 210 (699)
Q Consensus 176 L~lk~~~~--~~~~~~~---l~~ii~~ys~fl-~~pI~~~~ 210 (699)
.....+.. .-++.+. |.+-++..+=.. ..-|.+++
T Consensus 204 F~PD~~iF~~~~f~~d~l~~l~~RlrelA~Ln~Gl~I~l~d 244 (418)
T 1pvg_A 204 FKPDLTRFGMKELDNDILGVMRRRVYDINGSVRDINVYLNG 244 (418)
T ss_dssp EEECGGGGTCSSCCHHHHHHHHHHHHHHHHHSTTCEEEETT
T ss_pred EEEChHHcCCcccCHHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 88665431 1134444 344444433222 34566643
No 42
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=97.50 E-value=0.00012 Score=67.49 Aligned_cols=85 Identities=19% Similarity=0.232 Sum_probs=51.9
Q ss_pred hHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHH
Q 005370 29 EIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEA 108 (699)
Q Consensus 29 ~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~ 108 (699)
..++.|||.||+.+.... .....+.|.+..+.+.-.|+|.|||.||+ ++.+.+. -..+++
T Consensus 41 ~~il~~l~~Nai~h~~~~-----------~~~~~I~i~~~~~~~~~~i~V~D~G~g~~--~~~~~~~-~~~~~~------ 100 (145)
T 1th8_A 41 KTVVSEAVTNAIIHGYNN-----------DPNGIVSISVIIEDGVVHLTVRDEGVGIP--DIEEARQ-PLFTTK------ 100 (145)
T ss_dssp HHHHHHHHHHHHHTTSTT-----------CTTSEEEEEEEEETTEEEEEEEECSSCCS--CHHHHTC-CC----------
T ss_pred HHHHHHHHHHHHHHhcCC-----------CCCCEEEEEEEEeCCEEEEEEEECCCCcC--hHHHhhc-ccccCC------
Confidence 357899999999886420 01233455555555556799999999999 5553321 111111
Q ss_pred HhcCCCCCccccccchhhheeeecCeEEEEEe
Q 005370 109 LQAGADVSMIGQFGVGFYSAYLVAERVVVTTK 140 (699)
Q Consensus 109 ~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~ 140 (699)
...+..|+|++-+-.+++++.+.+.
T Consensus 101 -------~~~~~~GlGL~iv~~~~~~i~~~~~ 125 (145)
T 1th8_A 101 -------PELERSGMGFTIMENFMDEVIVESE 125 (145)
T ss_dssp ----------CCCSCHHHHHHHHSSEEEEEEE
T ss_pred -------CCCCCCcchHHHHHHHHheEEEEeC
Confidence 0124579999988888776666554
No 43
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.45 E-value=0.00012 Score=74.00 Aligned_cols=73 Identities=14% Similarity=0.081 Sum_probs=47.6
Q ss_pred HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005370 30 IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL 109 (699)
Q Consensus 30 i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~ 109 (699)
.++.+||.||+++... ...+.|.+..+.+.-.|+|.|||.||+.+++...+ .-..++
T Consensus 158 ~il~nLl~NA~~~~~~--------------~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if-~~~~~~-------- 214 (268)
T 4ew8_A 158 QTLDHLVENALRQTPP--------------GGRVTLSARRALGEVRLDVSDTGRGVPFHVQAHIF-DRFVGR-------- 214 (268)
T ss_dssp HHHHHHHHHHHHHSCT--------------TCEEEEEEEECSSEEEEEEEESSCCCCHHHHTTTT-STTCCC--------
T ss_pred HHHHHHHHHHHHhCCC--------------CCEEEEEEEecCCEEEEEEEcCCCCCCHHHHHHHH-HHHhcC--------
Confidence 3688999999988631 12345555555555679999999999998876432 211111
Q ss_pred hcCCCCCccccccchhhheeeec
Q 005370 110 QAGADVSMIGQFGVGFYSAYLVA 132 (699)
Q Consensus 110 ~~~~~~~~iG~FGIGf~S~F~va 132 (699)
.-+..|+|++.+-.++
T Consensus 215 -------~~~g~GlGL~i~~~~~ 230 (268)
T 4ew8_A 215 -------DRGGPGLGLALVKALV 230 (268)
T ss_dssp -------SSCCCTTHHHHHHHHH
T ss_pred -------CCCCCcccHHHHHHHH
Confidence 1146799998776554
No 44
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=97.38 E-value=0.00012 Score=70.56 Aligned_cols=58 Identities=19% Similarity=0.243 Sum_probs=34.4
Q ss_pred HHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHH
Q 005370 32 LRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLV 91 (699)
Q Consensus 32 lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~ 91 (699)
+.+||.||+.+............ ......+.|.+..+.+.-.|+|.|||.||+.+++.
T Consensus 52 l~nLl~NAik~~~~~~~~~~~~~--~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~ 109 (189)
T 1i58_A 52 LLHLLRNAIDHGIEPKEERIAKG--KPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKII 109 (189)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHT--SCSSEEEEEEEEEETTEEEEEEEECSSCCCHHHHH
T ss_pred HHHHHHHHHHhhhcccccccccc--CCCCCeEEEEEEecCCEEEEEEEeCCCCcCHHHHh
Confidence 89999999999631100000000 00112344444445455679999999999999874
No 45
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=97.36 E-value=0.00023 Score=77.25 Aligned_cols=116 Identities=20% Similarity=0.206 Sum_probs=64.1
Q ss_pred HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005370 30 IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL 109 (699)
Q Consensus 30 i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~ 109 (699)
.+|.+||.||+.|....... ....+.+.|.+..+.+.-.|+|.|+|.||+.+++...|.. ..++... ...
T Consensus 234 ~il~NLl~NAik~~~~~~~~-------~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~-f~~~~~~--~~~ 303 (394)
T 2btz_A 234 HMLFELFKNAMRATVESHES-------SLILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSY-MYSTAPT--PQP 303 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTTT-------CSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHHHHTCT-TTTCCC------
T ss_pred HHHHHHHHHHHHHhhhcccc-------CCCCCCEEEEEEeCCCEEEEEEEeCCCCCCHHHHHHHhcc-cccCCCC--CCc
Confidence 37889999999998642100 0011345566555555567999999999999998854432 2222110 000
Q ss_pred hcCCCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccCceEEEEeCCCCCCCCCceEEEEEecc
Q 005370 110 QAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKE 180 (699)
Q Consensus 110 ~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~~~~~i~~~~~~~~~~~GT~I~L~lk~ 180 (699)
+......+.+|+|+.-|-.+++. . +|...+... .+.||+++|.+..
T Consensus 304 --~~~~~~~~G~GLGL~i~~~i~~~-------~-----------gG~i~v~s~-----~g~Gt~f~i~lP~ 349 (394)
T 2btz_A 304 --GTGGTPLAGFGYGLPISRLYAKY-------F-----------QGDLQLFSM-----EGFGTDAVIYLKA 349 (394)
T ss_dssp ------------CCHHHHHHHHHHH-------T-----------TCEEEEEEE-----TTTEEEEEEEEES
T ss_pred --ccCCCCCCCccCCHHHHHHHHHH-------h-----------CCEEEEEec-----CCCceEEEEEecC
Confidence 00122356789999877666431 1 234444431 2579999998763
No 46
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=97.36 E-value=0.00016 Score=66.78 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=45.1
Q ss_pred HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005370 30 IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL 109 (699)
Q Consensus 30 i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~ 109 (699)
.++.+||.||+.+... ..+.|.+..+.+.-.|+|.|||.||+.+++.+.+....++.+
T Consensus 49 ~il~nLl~NA~~~~~~---------------~~I~i~~~~~~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~------- 106 (150)
T 1ysr_A 49 LAVDNAIANAVKHGGA---------------TLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGST------- 106 (150)
T ss_dssp HHHHHHHHHHHHTTCC---------------SEEEEEEEEETTEEEEEEEESSSCCCGGGHHHHHTSCC-----------
T ss_pred HHHHHHHHHHHhcCCC---------------cEEEEEEEecCCEEEEEEEECCCCCCHHHHHHHhcccccCCC-------
Confidence 3678999999887421 234555555555567999999999999998855432211110
Q ss_pred hcCCCCCccccccchhhheeeecC
Q 005370 110 QAGADVSMIGQFGVGFYSAYLVAE 133 (699)
Q Consensus 110 ~~~~~~~~iG~FGIGf~S~F~vad 133 (699)
..-+..|+|++.+-.+++
T Consensus 107 ------~~~~g~GlGL~i~~~~~~ 124 (150)
T 1ysr_A 107 ------ASHSGSGLGLALVAQQAQ 124 (150)
T ss_dssp -------------CCCHHHHHHHH
T ss_pred ------CCCCCCCcCHHHHHHHHH
Confidence 112467999887766643
No 47
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=97.35 E-value=0.00017 Score=71.46 Aligned_cols=74 Identities=23% Similarity=0.310 Sum_probs=48.6
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHh
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQ 110 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~~ 110 (699)
++.+||.||+.+... ...+.|.+..+.+.-.|+|.|||.||+.+++...+. -..+++
T Consensus 127 il~nLl~NA~~~~~~--------------~~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~if~-~~~~~~-------- 183 (244)
T 3d36_A 127 CLLNVMKNAIEAMPN--------------GGTLQVYVSIDNGRVLIRIADTGVGMTKEQLERLGE-PYFTTK-------- 183 (244)
T ss_dssp HHHHHHHHHHHTCTT--------------CEEEEEEEEEETTEEEEEEEECSSCCCHHHHHHTTS-TTCCSS--------
T ss_pred HHHHHHHHHHHhccC--------------CCeEEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhc-ccccCC--------
Confidence 678899998888631 123555555555556799999999999998874332 222211
Q ss_pred cCCCCCccccccchhhheeeecC
Q 005370 111 AGADVSMIGQFGVGFYSAYLVAE 133 (699)
Q Consensus 111 ~~~~~~~iG~FGIGf~S~F~vad 133 (699)
..+..|+|++.+-.++.
T Consensus 184 ------~~~g~GlGL~i~~~i~~ 200 (244)
T 3d36_A 184 ------GVKGTGLGMMVVYRIIE 200 (244)
T ss_dssp ------GGGCCSCHHHHHHHHHH
T ss_pred ------CCCCcchhHHHHHHHHH
Confidence 12457999988766643
No 48
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=97.29 E-value=0.00019 Score=65.98 Aligned_cols=72 Identities=13% Similarity=0.084 Sum_probs=45.9
Q ss_pred HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005370 30 IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL 109 (699)
Q Consensus 30 i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~ 109 (699)
.++.+||.||+.+... ...+.|.+..+.+.-.|+|.|||.||+.+++.+.+.. ..++
T Consensus 50 ~il~nll~NAi~~~~~--------------~~~I~i~~~~~~~~~~i~i~D~G~g~~~~~~~~~f~~-~~~~-------- 106 (152)
T 3a0y_A 50 QVLINLVQNAIEATGE--------------NGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSP-FFTT-------- 106 (152)
T ss_dssp HHHHHHHHHHHHHHCT--------------TCEEEEEEEECSSEEEEEEEEESCCCCGGGTTGGGST-TCCC--------
T ss_pred HHHHHHHHHHHHhcCC--------------CCEEEEEEEecCCEEEEEEEeCCCCcCHHHHHhHhhh-hccC--------
Confidence 3688999999988631 1234555554444557999999999999887743321 1111
Q ss_pred hcCCCCCccccccchhhheeee
Q 005370 110 QAGADVSMIGQFGVGFYSAYLV 131 (699)
Q Consensus 110 ~~~~~~~~iG~FGIGf~S~F~v 131 (699)
.-+..|+|++.+-.+
T Consensus 107 -------~~~g~GlGL~i~~~~ 121 (152)
T 3a0y_A 107 -------KTQGTGLGLSICRKI 121 (152)
T ss_dssp -------C--CCCCSHHHHHHH
T ss_pred -------CCCCCCcCHHHHHHH
Confidence 114579999877554
No 49
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=97.25 E-value=0.00011 Score=69.91 Aligned_cols=78 Identities=22% Similarity=0.244 Sum_probs=47.5
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCC--CCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHH
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKA--NKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEA 108 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~--~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~ 108 (699)
+|.+||.||+.+... ...+.|.+..... .-.|+|.|||.||+.+++...+. -..++..
T Consensus 47 il~nLl~NAi~~~~~--------------~~~i~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~lf~-~~~~~~~----- 106 (177)
T 3sl2_A 47 VLDNIISNALKYSPE--------------GGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEKVFD-RFYRVDK----- 106 (177)
T ss_dssp HHHHHHHHHHHTCCT--------------TCCEEEEEEEETTTTEEEEEEECCSSCCCTTTTTTTTS-TTCCCC------
T ss_pred HHHHHHHHHHHhCCC--------------CCeEEEEEEEccCCCEEEEEEEECCCCCCHHHHHHHHh-hhccCCC-----
Confidence 788999999988631 1345666644333 34689999999999988774332 2222211
Q ss_pred HhcCCCCCccccccchhhheeeec
Q 005370 109 LQAGADVSMIGQFGVGFYSAYLVA 132 (699)
Q Consensus 109 ~~~~~~~~~iG~FGIGf~S~F~va 132 (699)
......+..|+|++.+-.++
T Consensus 107 ----~~~~~~~g~GlGL~iv~~~~ 126 (177)
T 3sl2_A 107 ----ARTRKLGGTGLGLAIAKEMV 126 (177)
T ss_dssp ---------CCCCCCHHHHHHHHH
T ss_pred ----CCCCCCCCCCcCHHHHHHHH
Confidence 01122357899998776554
No 50
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=97.23 E-value=0.00016 Score=65.44 Aligned_cols=45 Identities=16% Similarity=0.119 Sum_probs=32.0
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHH
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADL 90 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el 90 (699)
+++||+.||+.+.. ...+.|.+..+.+.-.|+|.|||.||+.+++
T Consensus 44 il~nll~Na~k~~~---------------~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 88 (128)
T 3ehg_A 44 CLKEAVTNVVKHSQ---------------AKTCRVDIQQLWKEVVITVSDDGTFKGEENS 88 (128)
T ss_dssp HHHHHHHHHHHHTC---------------CSEEEEEEEEETTEEEEEEEESSCCCSCSSC
T ss_pred HHHHHHHHHHhcCC---------------CcEEEEEEEEeCCEEEEEEEECCcCcCcccC
Confidence 67899999887752 1235556555555567999999999986543
No 51
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=97.21 E-value=0.00023 Score=77.16 Aligned_cols=96 Identities=23% Similarity=0.342 Sum_probs=53.9
Q ss_pred HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchh-----
Q 005370 30 IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKE----- 104 (699)
Q Consensus 30 i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~----- 104 (699)
.+|.+||.||+.|....... . ....+.+.|.+..+.+.-.|+|.|||.||+.+++.+.| .-..+++..
T Consensus 241 ~il~NLl~NAik~~~~~~~~---~---~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF-~~f~~~~~~~~~~~ 313 (388)
T 1gkz_A 241 YILPELLKNAMRATMESHLD---T---PYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVM-DYHFTTAEASTQDP 313 (388)
T ss_dssp HHHHHHHHHHHHHHHHTCTT---C---TTSCCCEEEEEEECSSEEEEEEECCSCCCCTTTTTTTT-STTCCCC-------
T ss_pred HHHHHHHHHHHHHhhccccC---C---CCCCCCEEEEEEeCCCEEEEEEEEeCCCcCHHHHHHhc-CcccccCCCccccc
Confidence 47899999999998742100 0 00112456666555555679999999999999887433 222232211
Q ss_pred -----HHHHHh--cCCCCCccccccchhhheeeecC
Q 005370 105 -----FMEALQ--AGADVSMIGQFGVGFYSAYLVAE 133 (699)
Q Consensus 105 -----f~~~~~--~~~~~~~iG~FGIGf~S~F~vad 133 (699)
|. .+. ........+..|+|+.-|-.+++
T Consensus 314 ~~~~~~~-~~~~~~~~~~~~~~G~GLGL~i~r~i~~ 348 (388)
T 1gkz_A 314 RISPLFG-HLDMHSGGQSGPMHGFGFGLPTSRAYAE 348 (388)
T ss_dssp -------------------CCSCSSCHHHHHHHHHH
T ss_pred ccccchh-hcccccccCCCCcCCccCCHHHHHHHHH
Confidence 00 000 00112345678999987766643
No 52
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=97.20 E-value=0.00025 Score=69.42 Aligned_cols=45 Identities=16% Similarity=0.119 Sum_probs=30.2
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHH
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADL 90 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el 90 (699)
+++||+.||+.+.. ...+.|.+..+.+.-.|+|.|||+||+.+.+
T Consensus 134 il~nll~Na~k~~~---------------~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 178 (218)
T 3ehh_A 134 CLKEAVTNVVKHSQ---------------AKTCRVDIQQLWKEVVITVSDDGTFKGEENS 178 (218)
T ss_dssp HHHHHHHHHHHHTC---------------CSEEEEEEEEETTEEEEEEEESSCCCC----
T ss_pred HHHHHHHHHHHhCC---------------CCEEEEEEEEeCCEEEEEEEECCcCCCCCCC
Confidence 68899999887752 1235555555555567999999999998755
No 53
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=97.19 E-value=0.00035 Score=64.31 Aligned_cols=73 Identities=12% Similarity=0.090 Sum_probs=48.1
Q ss_pred HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005370 30 IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL 109 (699)
Q Consensus 30 i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~ 109 (699)
.++.+||.||+.+.. ..+.|.+..+.+.-.|+|.|||.||+.+++...+. -..+++
T Consensus 47 ~il~nLl~NAi~~~~----------------~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~-~~~~~~------- 102 (152)
T 1id0_A 47 EVMGNVLDNACKYCL----------------EFVEISARQTDEHLYIVVEDDGPGIPLSKREVIFD-RGQRVD------- 102 (152)
T ss_dssp HHHHHHHHHHHHHCS----------------SEEEEEEEECSSCEEEEEEESSSCCCGGGTTGGGS-CCCCTT-------
T ss_pred HHHHHHHHHHHHhCc----------------CeEEEEEEecCCEEEEEEEeCCCCcCHHHHHHHhc-cceecc-------
Confidence 467899999998863 13455555555566799999999999988774332 111111
Q ss_pred hcCCCCCccccccchhhheeeec
Q 005370 110 QAGADVSMIGQFGVGFYSAYLVA 132 (699)
Q Consensus 110 ~~~~~~~~iG~FGIGf~S~F~va 132 (699)
..-+..|+|++.+-.++
T Consensus 103 ------~~~~g~GlGL~i~~~~~ 119 (152)
T 1id0_A 103 ------TLRPGQGVGLAVAREIT 119 (152)
T ss_dssp ------CCCTTCCSCHHHHHHHH
T ss_pred ------CCCCCcccCHHHHHHHH
Confidence 11256899998776553
No 54
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=97.06 E-value=0.0034 Score=76.98 Aligned_cols=146 Identities=16% Similarity=0.206 Sum_probs=82.9
Q ss_pred HHHHHHHhcHHH-HHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHH--------HHHHHHhhhhcc
Q 005370 30 IFLRELISNSSD-ALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKA--------DLVNNLGTIARS 100 (699)
Q Consensus 30 i~lRELIqNA~D-A~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~--------el~~~l~~Ia~S 100 (699)
..+-|.|.||+| |++ + ...-.|.|.++.++++|+|.|||-||+-+ -++-.|+++-.+
T Consensus 62 hl~~EildNsiDea~a--------g------~~~~~I~V~i~~~d~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAG 127 (1177)
T 4gfh_A 62 KIFDEILVNAADNKVR--------D------PSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTS 127 (1177)
T ss_dssp HHHHHHHHHHHHHHHH--------C------TTCCEEEEEEETTTTEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEE
T ss_pred eEeeEEEEChHhHHhh--------C------CCCCeEEEEEECCCCEEEEEecCCcccccccCCCCCEeeeeeccccccc
Confidence 467899999999 443 1 11236778877778999999999999743 122233333334
Q ss_pred CchhHHHHHhcCCCCCccccccchhhheeeecCeEEEEEec-CCCceE--EEEEccC--ceEEEEeCCCCCCCCCceEEE
Q 005370 101 GTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKH-NDDEQY--IWESQAG--GSFTVTRDVSGEPLGRGTKMT 175 (699)
Q Consensus 101 ~~~~f~~~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~-~~~~~~--~w~~~~~--~~~~i~~~~~~~~~~~GT~I~ 175 (699)
|+-. .+.-.-.-|.-|||.--+=+++.++.|.+.. .++..| .|+.... +.-.+... .....||+|+
T Consensus 128 gKFd------~~~ykvSGGLHGVG~svVNALS~~~~vev~~~r~Gk~y~q~f~~g~~~~~~~~i~~~---~~~~tGT~V~ 198 (1177)
T 4gfh_A 128 SNYD------DDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKITSY---KKGPSYTKVT 198 (1177)
T ss_dssp SCCC------CSSCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEEC---CSSCCCEEEE
T ss_pred cCcC------CCCCeEeccCCChhhhHHhhcCCceEEEEEEEcCCEEEEEEEECCcccCCCCeeecC---CCCCCceEEE
Confidence 4311 1111224599999997777778887777753 233333 2332111 11122221 2346899999
Q ss_pred EEeccch--hhcccHHHHHHHHHHh
Q 005370 176 LYLKEDQ--LEYLEERRIKDLVKKH 198 (699)
Q Consensus 176 L~lk~~~--~~~~~~~~l~~ii~~y 198 (699)
....... ..-++.+.+....++.
T Consensus 199 F~PD~~iF~~~~~~~d~l~~~~r~~ 223 (1177)
T 4gfh_A 199 FKPDLTRFGMKELDNDILGVMRRRV 223 (1177)
T ss_dssp EEECHHHHTCSSCCHHHHHHHHHHH
T ss_pred EEeCHHhcCCcEeCHHHHHHHHHHH
Confidence 8765432 1123555565555544
No 55
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=96.98 E-value=0.0013 Score=71.30 Aligned_cols=117 Identities=21% Similarity=0.216 Sum_probs=68.6
Q ss_pred HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005370 30 IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL 109 (699)
Q Consensus 30 i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~ 109 (699)
.+|.+||.||+.|....... ....+.+.|.+..+.+.-.|+|.|+|.||+.+++.+.|. -..++...- ..
T Consensus 233 ~il~NLl~NAik~~~~~~~~-------~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~if~-~f~~~~~~~--~~ 302 (394)
T 2e0a_A 233 HMLFELFKNAMRATVEHQEN-------QPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFS-YTYSTAPTP--VM 302 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTT-------SSSCCCEEEEEEECSSEEEEEEEECSCCCCGGGHHHHTS-TTCCSSCCC----
T ss_pred HHHHHHHHHHHHHHHhcccc-------cCCCCCEEEEEEeCCCEEEEEEEeCCCCcCHHHHHHHhC-cCccCCCCC--Cc
Confidence 36889999999998742110 011234566665555556799999999999999885443 222221100 00
Q ss_pred hcCCCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccCceEEEEeCCCCCCCCCceEEEEEecc
Q 005370 110 QAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKE 180 (699)
Q Consensus 110 ~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~~~~~i~~~~~~~~~~~GT~I~L~lk~ 180 (699)
........+.+|+|+.-|-.+++. . +|...+... .+.||++++.+..
T Consensus 303 -~~~~~~~~~G~GLGL~i~~~i~~~-------~-----------gG~i~v~s~-----~g~Gt~f~i~lP~ 349 (394)
T 2e0a_A 303 -DNSRNAPLAGFGYGLPISRLYAKY-------F-----------QGDLNLYSL-----SGYGTDAIIYLKA 349 (394)
T ss_dssp -----CCCSSCSSCHHHHHHHHHHH-------T-----------TCEEEEEEE-----TTTEEEEEEEEES
T ss_pred -CcCCCCCCCCcccCHHHHHHHHHH-------h-----------CCEEEEEec-----CCccEEEEEEeCC
Confidence 000123457789999877666431 1 234444431 2579999999863
No 56
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=96.97 E-value=0.00048 Score=67.18 Aligned_cols=96 Identities=15% Similarity=0.135 Sum_probs=45.3
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHh
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQ 110 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~~ 110 (699)
++.+||.||+.+... ...|.|..... .|+|.|||.||+.+++...+.. ..+++
T Consensus 121 il~nLl~NAi~~~~~----------------~~~i~i~~~~~--~i~V~D~G~Gi~~~~~~~if~~-f~~~~-------- 173 (222)
T 3jz3_A 121 LVRNLLDNAVRYSPQ----------------GSVVDVTLNAD--NFIVRDNGPGVTPEALARIGER-FYRPP-------- 173 (222)
T ss_dssp HHHHHHHHHHHTCCT----------------TCEEEEEECSS--EEEEECSCC---------------------------
T ss_pred HHHHHHHHHHHcCCC----------------CCeEEEEEccC--eEEEEECCCCCCHHHHHHHHhh-hccCC--------
Confidence 678999999888531 23466665433 3999999999999988754422 21111
Q ss_pred cCCCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccCceEEEEeCCCCCCCCCceEEEEEecc
Q 005370 111 AGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKE 180 (699)
Q Consensus 111 ~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~~~~~i~~~~~~~~~~~GT~I~L~lk~ 180 (699)
....+..|+|++.|-.++... +|.+.+.. ..+.||+|++.+-.
T Consensus 174 ----~~~~~g~GlGL~i~~~i~~~~------------------gG~i~i~s-----~~~~Gt~v~~~~P~ 216 (222)
T 3jz3_A 174 ----GQTATGSGLGLSIVQRIAKLH------------------GMNVEFGN-----AEQGGFEAKVSWLE 216 (222)
T ss_dssp ------------CTHHHHHHHHHHT------------------TCEEECCB-----CTTSSBEEEEECCC
T ss_pred ----CCCCCcccccHHHHHHHHHHc------------------CCEEEEEc-----CCCCcEEEEEeecC
Confidence 112246899998776554321 23333332 23678888888653
No 57
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=96.97 E-value=0.0014 Score=71.55 Aligned_cols=117 Identities=18% Similarity=0.219 Sum_probs=68.2
Q ss_pred HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005370 30 IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL 109 (699)
Q Consensus 30 i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~ 109 (699)
.+|.+||.||+.|....... ....+.+.|.+..+.+.-.|+|.|+|.||+.+++.+.|. -..++... ...
T Consensus 246 ~il~NLl~NAik~t~~~~~~-------~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~e~~~~if~-~f~~~~~~--~~~ 315 (407)
T 2q8g_A 246 HMVFELFKNAMRATMEHHAN-------RGVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFN-YMYSTAPR--PRV 315 (407)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-------TCCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGC-TTTTCCCC--CCS
T ss_pred HHHHHHHHHHHHHHhhcccc-------CCCCCCEEEEEEeCCCEEEEEEEecCCCCCHHHHHHHhC-ccccCCCC--CCc
Confidence 36889999999998642100 011234556555555556799999999999999885432 22222110 000
Q ss_pred hcCCCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccCceEEEEeCCCCCCCCCceEEEEEecc
Q 005370 110 QAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKE 180 (699)
Q Consensus 110 ~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~~~~~i~~~~~~~~~~~GT~I~L~lk~ 180 (699)
........|.+|+|+.-|-.+++. . +|...+... .+.||+++|.+..
T Consensus 316 -~~~~~~~~~G~GLGL~Ivr~i~~~-------~-----------gG~i~v~s~-----~g~Gt~f~i~LP~ 362 (407)
T 2q8g_A 316 -ETSRAVPLAGFGYGLPISRLYAQY-------F-----------QGDLKLYSL-----EGYGTDAVIYIKA 362 (407)
T ss_dssp -SCCSCCCSSCTTCHHHHHHHHHHH-------T-----------TCEEEEEEE-----TTTEEEEEEEEES
T ss_pred -cccCCCCCCCcCCCHHHHHHHHHH-------h-----------CCEEEEEEc-----CCCceEEEEEECC
Confidence 000123457899999877665431 1 234444431 2579999999863
No 58
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=96.91 E-value=0.0017 Score=71.25 Aligned_cols=118 Identities=24% Similarity=0.289 Sum_probs=65.4
Q ss_pred HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHH
Q 005370 30 IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEAL 109 (699)
Q Consensus 30 i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~ 109 (699)
.+|.+||.||+.|....... .+ ...+.+.|.+..+.+.-.|+|.|+|.||+.+++.+.|. -..++... ..+
T Consensus 256 ~vl~NLl~NAik~~~~~~~~---~~---~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~l~~iF~-~f~~~~~~--~~~ 326 (419)
T 1y8o_A 256 HMLFELFKNSMRATVELYED---RK---EGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFN-YMYSTAPR--PSL 326 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHTT---CS---SCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGC-TTTC---------
T ss_pred HHHHHHHHHHHHHHHhhccc---cC---CCCCCEEEEEEeCCCEEEEEEEECCCCCCHHHHHHHhC-cccccCCC--CCc
Confidence 37889999999998742110 00 00124556655555556799999999999999885442 22222110 000
Q ss_pred hcCCCCCccccccchhhheeeecCeEEEEEecCCCceEEEEEccCceEEEEeCCCCCCCCCceEEEEEecc
Q 005370 110 QAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKE 180 (699)
Q Consensus 110 ~~~~~~~~iG~FGIGf~S~F~vad~v~V~T~~~~~~~~~w~~~~~~~~~i~~~~~~~~~~~GT~I~L~lk~ 180 (699)
. .......+.+|+|+.-|-.+++. . +|...+... .+.||+++|.+..
T Consensus 327 ~-~~~~~~~~G~GLGL~I~k~iv~~-------~-----------gG~I~v~s~-----~g~Gt~f~i~LP~ 373 (419)
T 1y8o_A 327 E-PTRAAPLAGFGYGLPISRLYARY-------F-----------QGDLKLYSM-----EGVGTDAVIYLKA 373 (419)
T ss_dssp -------CC--CTTHHHHHHHHHHH-------T-----------TCEEEEEEE-----TTTEEEEEEEEES
T ss_pred c-ccCCCCcCCeecCHHHHHHHHHH-------h-----------CCEEEEEec-----CCCCEEEEEEecC
Confidence 0 00123456799999877665431 1 234444432 2579999999863
No 59
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=96.88 E-value=0.00078 Score=67.87 Aligned_cols=80 Identities=15% Similarity=0.216 Sum_probs=45.6
Q ss_pred HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEE--cCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHH
Q 005370 30 IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIP--DKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFME 107 (699)
Q Consensus 30 i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~--d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~ 107 (699)
.++..||.||+.+... ......|.|.. ..+.-.|+|.|||.||+.+++.+.|.. ..+++..
T Consensus 141 ~il~NLl~NAik~~~~-------------~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~-f~~~~~~--- 203 (258)
T 2c2a_A 141 QVLLNLLNNGVKYSKK-------------DAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQ-FYRVDSS--- 203 (258)
T ss_dssp HHHHHHHHHHHHTCCT-------------TCTTCEEEEEEEEETTEEEEEEEECSSCCCGGGTTGGGST-TCCCC-----
T ss_pred HHHHHHHHHHHhcCcC-------------CCCceeEEEEEecCCCeEEEEEEecCCCCCHHHHHhhccc-cccCCCC---
Confidence 3678899999888631 01123445444 444456899999999999988744332 2221110
Q ss_pred HHhcCCCCCccccccchhhheeeec
Q 005370 108 ALQAGADVSMIGQFGVGFYSAYLVA 132 (699)
Q Consensus 108 ~~~~~~~~~~iG~FGIGf~S~F~va 132 (699)
.....+..|+|++-|-.++
T Consensus 204 ------~~~~~~G~GLGL~i~~~iv 222 (258)
T 2c2a_A 204 ------LTYEVPGTGLGLAITKEIV 222 (258)
T ss_dssp -------------CCCTHHHHHHHH
T ss_pred ------CCCCCCCcchHHHHHHHHH
Confidence 0112245899998776553
No 60
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=96.66 E-value=0.0013 Score=60.59 Aligned_cols=74 Identities=20% Similarity=0.193 Sum_probs=37.0
Q ss_pred HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCC----------CCEEEEEeCCCCCCHHHHHHHHhhhhc
Q 005370 30 IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKA----------NKTLTIVDSGIGMTKADLVNNLGTIAR 99 (699)
Q Consensus 30 i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~----------~~~l~I~DnGiGMt~~el~~~l~~Ia~ 99 (699)
.++.+||.||+.+.... ...+.|.+..+.. .-.|+|.|||.||+.+++...+. -..
T Consensus 51 ~il~nLl~NAik~~~~~-------------~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~-~~~ 116 (160)
T 1r62_A 51 QVLLNIVRNALQALGPE-------------GGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFY-PMV 116 (160)
T ss_dssp HHHHHHHHHHHHHHGGG-------------CEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC--------------
T ss_pred HHHHHHHHHHHHHhhcc-------------CCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHHHhhC-ccc
Confidence 36789999999987520 1233444443333 34689999999999998874432 111
Q ss_pred cCchhHHHHHhcCCCCCccccccchhhheeeec
Q 005370 100 SGTKEFMEALQAGADVSMIGQFGVGFYSAYLVA 132 (699)
Q Consensus 100 S~~~~f~~~~~~~~~~~~iG~FGIGf~S~F~va 132 (699)
++ + -+..|+|++.+-.++
T Consensus 117 ~~------------~---~~g~GlGL~i~~~~~ 134 (160)
T 1r62_A 117 SG------------R---EGGTGLGLSIARNLI 134 (160)
T ss_dssp ----------------------CHHHHHHHHHH
T ss_pred cC------------C---CCCCccCHHHHHHHH
Confidence 11 0 145899998776654
No 61
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=96.61 E-value=0.0014 Score=61.17 Aligned_cols=74 Identities=11% Similarity=0.109 Sum_probs=47.0
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHHHHh
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFMEALQ 110 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~~~~ 110 (699)
++.+||.||+.+. ...+.|.+..+.+.-.|+|.|||.||+.+++...+. -..+++
T Consensus 51 il~nll~NAik~~----------------~~~I~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~-~f~~~~-------- 105 (161)
T 1bxd_A 51 AVANMVVNAARYG----------------NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQ-PFVRGD-------- 105 (161)
T ss_dssp HHHHHHHHHHTTC----------------CSCEEEEEEEETTEEEEEEEEESSCSCTTGGGCSSC-CCCCCS--------
T ss_pred HHHHHHHHHHhhc----------------CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHhCC-CceeCC--------
Confidence 6778888887664 124566665555556799999999999988764322 112211
Q ss_pred cCCCCCccccccchhhheeeec
Q 005370 111 AGADVSMIGQFGVGFYSAYLVA 132 (699)
Q Consensus 111 ~~~~~~~iG~FGIGf~S~F~va 132 (699)
.....+..|+|++.+-.++
T Consensus 106 ---~~~~~~g~GlGL~i~~~~~ 124 (161)
T 1bxd_A 106 ---SARTISGTGLGLAIVQRIV 124 (161)
T ss_dssp ---CCCCCCCCSCCCCTTHHHH
T ss_pred ---CCCCCCCcccCHHHHHHHH
Confidence 1111256899998776654
No 62
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=96.31 E-value=0.0013 Score=58.72 Aligned_cols=43 Identities=26% Similarity=0.384 Sum_probs=31.2
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHH
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKAD 89 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~e 89 (699)
++.|||.||..+.. ...+.|.+..+.+ -.|+|.|||.||+.+.
T Consensus 47 il~nll~NA~k~~~---------------~~~i~i~~~~~~~-~~i~v~D~G~gi~~~~ 89 (129)
T 3zxo_A 47 VVREAVSNAVRHAA---------------ASTLTVRVKVDDD-LCIEVTDNGRGMPDEF 89 (129)
T ss_dssp HHHHHHHHCCCCSS---------------CCEEEEEEEESSE-EEEEEEECCCCCTTTT
T ss_pred HHHHHHHHHHHhCC---------------CceEEEEEEEcCC-EEEEEecCCCCCCccc
Confidence 57888888887742 1345666666666 7799999999998543
No 63
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=96.30 E-value=0.0041 Score=67.23 Aligned_cols=52 Identities=19% Similarity=0.240 Sum_probs=34.7
Q ss_pred HHHHHhcHHHHHH----hhhhhhccCCCccCCCCCceEEEEE--cCCCCEEEEEeCCCCCCHHHHH
Q 005370 32 LRELISNSSDALD----KIRFESLTDKSKLDGQPELFIRIIP--DKANKTLTIVDSGIGMTKADLV 91 (699)
Q Consensus 32 lRELIqNA~DA~~----k~r~~~~~~~~~~~~~~~~~I~I~~--d~~~~~l~I~DnGiGMt~~el~ 91 (699)
|.+||.||+|++- .|... +......|.|.. +.+.-.|+|.|||.||+.+.+.
T Consensus 111 l~nLl~NAi~h~~e~~~~r~~~--------gk~~~g~I~i~~~~~~~~v~i~V~D~G~Gi~~~~~~ 168 (379)
T 1b3q_A 111 LLHLLRNAIDHGIEPKEERIAK--------GKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKII 168 (379)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHT--------TCCSSEEEEEEEEEETTEEEEEEEECSCCCCHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHhc--------CCCCCcEEEEEEEEeCCEEEEEEEECCCCCCHHHHH
Confidence 8999999999972 11110 111234555554 4444568999999999999874
No 64
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=95.73 E-value=0.0033 Score=65.64 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=35.5
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHHHHH
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKADLVN 92 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~el~~ 92 (699)
++.+||.||+.+... ...+.|.+..+.+.-.|+|.|||+||+.+.+.+
T Consensus 248 vl~nLl~NA~k~~~~--------------~~~i~i~~~~~~~~~~i~v~D~G~Gi~~~~~~~ 295 (349)
T 3a0r_A 248 VLINLVQNAIEATGE--------------NGKIKITSEDMYTKVRVSVWNSGPPIPEELKEK 295 (349)
T ss_dssp HHHHHHTHHHHTTCT--------------TCCEEEEEEEETTEEEEEEEEESCCCCGGGGTT
T ss_pred HHHHHHHHHHHhccC--------------CCEEEEEEEecCCEEEEEEEECCCCCChHHHhh
Confidence 688999999988631 234556655555556799999999999987763
No 65
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=95.34 E-value=0.0072 Score=53.56 Aligned_cols=43 Identities=26% Similarity=0.431 Sum_probs=31.1
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCCCCHHH
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIGMTKAD 89 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiGMt~~e 89 (699)
+++||+.||..+.. ...+.|.+..+.+ -.|+|+|||.||+.+.
T Consensus 43 il~nll~Na~k~~~---------------~~~i~i~~~~~~~-~~i~v~D~G~gi~~~~ 85 (124)
T 3zxq_A 43 VLREAVSNAVRHAN---------------ATSLAINVSVEDD-VRVEVVDDGVGISGDI 85 (124)
T ss_dssp HHHHHHHHHHTCTT---------------CCEEEEEEEEEEE-EEEEEEECCCSSCGGG
T ss_pred HHHHHHHHHHHhCC---------------CCEEEEEEEeCCC-EEEEEEECCCCCCccc
Confidence 67888888876642 1245666665656 7899999999998654
No 66
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=94.07 E-value=0.041 Score=55.42 Aligned_cols=47 Identities=9% Similarity=0.052 Sum_probs=29.5
Q ss_pred HHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCCCCEEEEEeCCCC--CCHHHHH
Q 005370 31 FLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKANKTLTIVDSGIG--MTKADLV 91 (699)
Q Consensus 31 ~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~l~I~DnGiG--Mt~~el~ 91 (699)
++.=|++||.+|.. ....+.|.+..+.+...|+|.|+|.| ++++.+.
T Consensus 150 vl~NLl~NA~~a~~--------------~gg~I~v~~~~~~~~~~i~V~D~G~Gi~i~~~~~~ 198 (247)
T 4fpp_A 150 AVLNIAQIAASALP--------------AGGVATVKGVAADGRFSIIADAKGPRARLRPEVLA 198 (247)
T ss_dssp HHHHHHHHHHTTCT--------------TCCEEEEEEEEETTEEEEEEEEESTTCCCCHHHHH
T ss_pred HHHHHHHHHHHhcC--------------CCCeEEEEEEEECCEEEEEEEEcCCCCCCCHHHHH
Confidence 34557777776653 12345555555555667999999977 5655444
No 67
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=87.77 E-value=0.6 Score=50.51 Aligned_cols=73 Identities=15% Similarity=0.136 Sum_probs=42.8
Q ss_pred hHHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEcCC-CCEEEEEeCCCCCCHHHHHHHHhhhhccCchhHHH
Q 005370 29 EIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPDKA-NKTLTIVDSGIGMTKADLVNNLGTIARSGTKEFME 107 (699)
Q Consensus 29 ~i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~l~I~DnGiGMt~~el~~~l~~Ia~S~~~~f~~ 107 (699)
..++.||+.||+...-. ......+.|++..+.+ .-.|+|.|+|.|++.. +.
T Consensus 299 ~l~v~El~~Nav~Ha~~-----------~~~~g~i~v~~~~~~~~~l~i~V~D~G~g~~~~-----------~~------ 350 (399)
T 3ke6_A 299 VHAISEFVENAVEHGYA-----------TDVSKGIVVAAALAGDGNVRASVIDRGQWKDHR-----------DG------ 350 (399)
T ss_dssp HHHHHHHHHHHHHHBCC-----------SCCTTCEEEEEEECTTSEEEEEEEESCBC-----------------------
T ss_pred HHHHHHHHHHHHHhccc-----------CCCCceEEEEEEEcCCCEEEEEEEECCCCCCCC-----------CC------
Confidence 35899999999998631 0112345666665533 4579999999999864 10
Q ss_pred HHhcCCCCCccccccchhhheeeecCeEEEEE
Q 005370 108 ALQAGADVSMIGQFGVGFYSAYLVAERVVVTT 139 (699)
Q Consensus 108 ~~~~~~~~~~iG~FGIGf~S~F~vad~v~V~T 139 (699)
. +.-|.|++-+=.+|+++.+.+
T Consensus 351 -----~-----~~~G~GL~lv~~l~~~~~~~~ 372 (399)
T 3ke6_A 351 -----A-----RGRGRGLAMAEALVSEARIMH 372 (399)
T ss_dssp ----------------CHHHHHTTSSEEEEEE
T ss_pred -----C-----CCCCcHHHHHHHHHHheeeEE
Confidence 0 234777777777788877654
No 68
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=73.55 E-value=2.8 Score=40.76 Aligned_cols=55 Identities=13% Similarity=0.128 Sum_probs=36.3
Q ss_pred HHHHHHHhcHHHHHHhhhhhhccCCCccCCCCCceEEEEEc--CCCCEEEEEeCCCCCCHHHHHH
Q 005370 30 IFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRIIPD--KANKTLTIVDSGIGMTKADLVN 92 (699)
Q Consensus 30 i~lRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d--~~~~~l~I~DnGiGMt~~el~~ 92 (699)
.-+-.|+.||.+|+.... .+ .....+.|.|..+ .+.-.|.|.|+|.|++.+.+.+
T Consensus 108 ~~lgnLi~na~~Ai~~~~-----~~---~~~~~I~i~i~~~~~~~~l~i~V~d~G~~i~~e~~~~ 164 (192)
T 1ixm_A 108 QKLAKLMRKLFHLFDQAV-----SR---ESENHLTVSLQTDHPDRQLILYLDFHGAFADPSAFDD 164 (192)
T ss_dssp HHHHHHHHHHHHHHHHHB-----CT---TSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGGCC-
T ss_pred HHHHHHHHHHHHHHHhhh-----cc---CCCCeEEEEEEEecCCCEEEEEEEeCCCCCCHHHHHH
Confidence 345679999999986420 01 1123455555554 4557899999999999877663
Done!