BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005371
(699 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q56X46|MSL2_ARATH Mechanosensitive ion channel protein 2, chloroplastic
OS=Arabidopsis thaliana GN=MSL2 PE=2 SV=1
Length = 673
Score = 774 bits (1998), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/736 (56%), Positives = 495/736 (67%), Gaps = 126/736 (17%)
Query: 1 MASAGSLQLSHDLGLCRNQVFKKQFKFWPQDF---RSFNLSGSPYS-------------- 43
MA G+LQLSH LGLCRNQ F P++ R ++S P S
Sbjct: 1 MALYGTLQLSHSLGLCRNQRFCN-----PENSAMRRRLHISNGPLSLGVPLGQHGFSNIL 55
Query: 44 -------QINPIPYRSNRIR------------------------SYNALQCSPQALKLVP 72
I +P R+ R S+ +Q P KLVP
Sbjct: 56 LSNYLRRPICSVPCRTTAFRCHSFSASGKAIEPAVKAVTVVLTKSHGLMQQFPFVYKLVP 115
Query: 73 GIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKSKTHHVMTSYIQPLMLWTGAILICRAL 132
+A++VF+ WGL P RQ RN+LL K+DN WKKS T+HVMTSY+QPL+LW GA+ ICRAL
Sbjct: 116 AVALLVFSLWGLVPFARQGRNILLNKNDNGWKKSGTYHVMTSYVQPLLLWLGALFICRAL 175
Query: 133 DPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQ 192
DPVVLPTEA ++VK RLLNFVRSLSTVLAFAYCLSSLIQQ QK F ET++ D RNMGFQ
Sbjct: 176 DPVVLPTEASKIVKDRLLNFVRSLSTVLAFAYCLSSLIQQTQKLFSETSNPSDTRNMGFQ 235
Query: 193 FAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHAT 252
FAGKA+YSAVWVA+ SLFMELLGFSTQKWLTAGGLGTVL+TLAGREI TNFLSS MIHAT
Sbjct: 236 FAGKALYSAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLITLAGREILTNFLSSVMIHAT 295
Query: 253 RPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKS 312
RPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTI+RGEDREA+HIPNHKFTVNVVRNL+QK+
Sbjct: 296 RPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAIHIPNHKFTVNVVRNLTQKT 355
Query: 313 HWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILV 372
HWRIKTHLAISHLDV+KIN+IVADMRKVLAKNP VEQQRLHRRVFL+N+ PENQAL IL+
Sbjct: 356 HWRIKTHLAISHLDVNKINNIVADMRKVLAKNPMVEQQRLHRRVFLENVIPENQALSILI 415
Query: 373 SCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIFSDADLENVPFADTIY 432
SCFVKTSHHEEYL VKEAILLDLLRVISHHRARLATPIRT++K++++ D+EN PF +++Y
Sbjct: 416 SCFVKTSHHEEYLGVKEAILLDLLRVISHHRARLATPIRTIRKMYTETDVENTPFGESMY 475
Query: 433 NRGGGASNRPLLLIEPPYRINGEDKTKSQTRPSRSSGEQDGKTTPRLTPDVKADSKVSVS 492
GG S RPL+LIEP Y+INGEDK+KSQ R ++ + EQ+ K ++ K +
Sbjct: 476 --GGVTSRRPLMLIEPAYKINGEDKSKSQNRAAKPTAEQENK---------GSNPKSKET 524
Query: 493 SKSDSKADAKIPEAPNSDTREDKNGAAAHMSDPKVADKVTVKSTSKSFPKTKSKVAEISS 552
S D KA+ K+ E+P SDT +KV E +
Sbjct: 525 SSPDLKANVKVGESPVSDT---------------------------------NKVPEETV 551
Query: 553 SEPKVLGSTSDNPT-KDRKVSDSKQPKIVGQGNATQNSKIDNPSISSSGGSDKAGGLQES 611
++P V+ + S PT KD + S +++PK G +++K D S+S S
Sbjct: 552 AKP-VIKAVSKPPTPKDTETSGTEKPKAKRSGGTIKSTKTDETDSSTSSASRS------- 603
Query: 612 KQESNKLPSTQPPVSRPALEENIVLGVALEGSKRTLPIEEGM--PSSQPVVKELTTANRN 669
LEENIVLGVALEGSKRTLPIEE + P + KELT A R+
Sbjct: 604 -----------------TLEENIVLGVALEGSKRTLPIEEEIHSPPMETDAKELTGARRS 646
Query: 670 -GNVSSTAEKEKKDGQ 684
GN A+KE+KD Q
Sbjct: 647 GGNGPLVADKEQKDSQ 662
>sp|Q8L7W1|MSL3_ARATH Mechanosensitive ion channel protein 3, chloroplastic
OS=Arabidopsis thaliana GN=MSL3 PE=2 SV=1
Length = 678
Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/600 (56%), Positives = 433/600 (72%), Gaps = 44/600 (7%)
Query: 56 RSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRK-SDNSWKKSKTHHVMTS 114
R Y+AL +P +KL+P + I+ FATWGL PL+R +R L K +D + +KS T +++ S
Sbjct: 100 RVYDALGGNPHLVKLIPAVGILAFATWGLRPLLRLARTTLFEKGNDANSQKSSTQYIVVS 159
Query: 115 YIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQ 174
Y+QPL+LW+GAIL+CR LDP+VLP+ AG+ +KQRLL F RS+STVLAF+ CLSSL+QQ Q
Sbjct: 160 YLQPLLLWSGAILLCRTLDPIVLPSSAGQAIKQRLLIFARSISTVLAFSCCLSSLLQQVQ 219
Query: 175 KFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTL 234
KFFMET + D RNMGF FAGKAVY+A WVA+ASLFMELLGFSTQKWLTAGGLGTVLLTL
Sbjct: 220 KFFMETNNPADTRNMGFSFAGKAVYTAAWVAAASLFMELLGFSTQKWLTAGGLGTVLLTL 279
Query: 235 AGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVH 294
AGREI TNFLSS MIHATRPFVLNEWIQTKI GYEVSGTVE VGWWSPTI+RG+DREAVH
Sbjct: 280 AGREILTNFLSSIMIHATRPFVLNEWIQTKIGGYEVSGTVEQVGWWSPTIIRGDDREAVH 339
Query: 295 IPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHR 354
IPNH+F+VN+VRNL+QK+HWRIKTHLAISHLDV KIN+IVADMRKVL+KNPQ+EQQ++HR
Sbjct: 340 IPNHQFSVNIVRNLTQKTHWRIKTHLAISHLDVSKINNIVADMRKVLSKNPQIEQQKIHR 399
Query: 355 RVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQ 414
RVFL++I+PENQAL IL+SCFVKTS EEYLCVKEA+LLDLL VI HH ARLATPIRTVQ
Sbjct: 400 RVFLEDIDPENQALRILISCFVKTSRFEEYLCVKEAVLLDLLTVIRHHGARLATPIRTVQ 459
Query: 415 KIFSDADLENVPFADTIYNRGGGASNRPLLLIEPPYRINGEDKTKSQTRPSRSSGEQDGK 474
++ ++A+++ F+D ++N+ A NR +LIEP Y+IN +D +KS PS S G++
Sbjct: 460 RMRNEAEVDTAGFSDIVFNQA--AMNRRYMLIEPSYKINSDDNSKS---PSPSPGQK--- 511
Query: 475 TTPRLTPDVKADSKVSVSSKSDSKADAKIPEAPNSDTREDKNGAAAHMSDPKVAD-KVTV 533
+P +P K++ + + E P+ E +N + +S+ K + K +
Sbjct: 512 -SP--SPGQKSEER-------------DLQEEPSETKAETENNGSVPVSNAKKENQKAAL 555
Query: 534 KSTSKSFPKTKSKVAEISSSEPKVLGSTSDNPTKDRKVSDSKQPKIVGQGNATQNSKI-- 591
S S + K S STSD P + S+ K+ + VG + + ++
Sbjct: 556 GSNSNTGTKGSST-------------STSDQPVAQK--SEEKKKESVGDPHKAEKDEVSD 600
Query: 592 DNPSISSSGGSDKAGGLQESKQESNKLPSTQPPVSRPALEENIVLGVALEGSKRTLPIEE 651
D +I + S G +++ ES S LEEN+VLGVAL+GSKRTLPI+E
Sbjct: 601 DEATIEQTLKSKAKQGSEKNNGESKARDGGGSGTS-SLLEENLVLGVALDGSKRTLPIDE 659
>sp|P0AEB5|YNAI_ECOLI MscS family inner membrane protein YnaI OS=Escherichia coli (strain
K12) GN=ynaI PE=1 SV=1
Length = 343
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 112/211 (53%), Gaps = 8/211 (3%)
Query: 204 VASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQT 263
V L+ E G S LT GG+G + + +AG++I +NF S M++ RPF + +WI++
Sbjct: 128 VVLVLLYGEHFGMSLSGLLTFGGIGGLAVGMAGKDILSNFFSGIMLYFDRPFSIGDWIRS 187
Query: 264 KIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAIS 323
E GTV +G W T + D +++PN F+ V N + ++ RI T + +
Sbjct: 188 PDRNIE--GTVAEIG-WRITKITTFDNRPLYVPNSLFSSISVENPGRMTNRRITTTIGLR 244
Query: 324 HLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINP-ENQALLILVSCFVKTSHHE 382
+ D K+ IV +R++L +P ++Q R+ L N + +L I+V CF KT+
Sbjct: 245 YEDAAKVGVIVEAVREMLKNHPAIDQ----RQTLLVYFNQFADSSLNIMVYCFTKTTVWA 300
Query: 383 EYLCVKEAILLDLLRVISHHRARLATPIRTV 413
E+L ++ + L ++ ++ H A A P +T+
Sbjct: 301 EWLAAQQDVYLKIIDIVQSHGADFAFPSQTL 331
>sp|P0AEB6|YNAI_ECO57 MscS family inner membrane protein YnaI OS=Escherichia coli O157:H7
GN=ynaI PE=3 SV=1
Length = 343
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 112/211 (53%), Gaps = 8/211 (3%)
Query: 204 VASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQT 263
V L+ E G S LT GG+G + + +AG++I +NF S M++ RPF + +WI++
Sbjct: 128 VVLVLLYGEHFGMSLSGLLTFGGIGGLAVGMAGKDILSNFFSGIMLYFDRPFSIGDWIRS 187
Query: 264 KIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAIS 323
E GTV +G W T + D +++PN F+ V N + ++ RI T + +
Sbjct: 188 PDRNIE--GTVAEIG-WRITKITTFDNRPLYVPNSLFSSISVENPGRMTNRRITTTIGLR 244
Query: 324 HLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINP-ENQALLILVSCFVKTSHHE 382
+ D K+ IV +R++L +P ++Q R+ L N + +L I+V CF KT+
Sbjct: 245 YEDAAKVGVIVEAVREMLKNHPAIDQ----RQTLLVYFNQFADSSLNIMVYCFTKTTVWA 300
Query: 383 EYLCVKEAILLDLLRVISHHRARLATPIRTV 413
E+L ++ + L ++ ++ H A A P +T+
Sbjct: 301 EWLAAQQDVYLKIIDIVQSHGADFAFPSQTL 331
>sp|O25170|Y415_HELPY Uncharacterized MscS family protein HP_0415 OS=Helicobacter pylori
(strain ATCC 700392 / 26695) GN=HP_0415 PE=3 SV=1
Length = 623
Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 117/262 (44%), Gaps = 37/262 (14%)
Query: 178 METTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGR 237
M T + + R K VY +++ + ++ LGF+ + + G+G + + LA +
Sbjct: 349 MATKSTHNFRKEVINLILKVVYFLIFIVALLGVLKQLGFNVSAIIASLGIGGLAVALAVK 408
Query: 238 EIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPN 297
++ NF +S ++ F +WI EV GTV +G TI R D + +PN
Sbjct: 409 DVLANFFASVILLLDNSFSQGDWIVCG----EVEGTVVEMGLRRTTI-RAFDNALLSVPN 463
Query: 298 HKFTVNVVRNLS-QKSHWRIKTHLAISHLDVHK-INSIVADMRKVLAKNPQV-------- 347
+ +RN S +K RIK + +++ + V D++++L +P++
Sbjct: 464 SELAGKPIRNWSRRKVGRRIKMEIGLTYSSSQSALQLCVKDIKEMLENHPKIANGADSAL 523
Query: 348 ----EQQRLHRR----------------VFLDNINPENQALLILVSCFVKTSHHEEYLCV 387
+ + + ++ VFLD + ++ ILV CF KT EE+L V
Sbjct: 524 QNVSDYRYMFKKDIVSIDDFLGYKNNLFVFLDQF--ADSSINILVYCFSKTVVWEEWLEV 581
Query: 388 KEAILLDLLRVISHHRARLATP 409
KE ++L ++ ++ H A P
Sbjct: 582 KEDVMLKIMGIVEKHHLSFAFP 603
>sp|Q9ZKG7|Y415_HELPJ Uncharacterized MscS family protein jhp_0969 OS=Helicobacter pylori
(strain J99) GN=jhp_0969 PE=3 SV=1
Length = 623
Score = 73.6 bits (179), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 112/244 (45%), Gaps = 37/244 (15%)
Query: 196 KAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPF 255
K VY +++ + ++ LGF+ + + G+G + + LA +++ NF +S ++ F
Sbjct: 367 KVVYFLIFIVALLGVLKQLGFNVSAIIASLGIGGLAVALAVKDVLANFFASVILLLDNSF 426
Query: 256 VLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLS-QKSHW 314
+WI EV GTV +G TI R D + +PN + +RN S +K
Sbjct: 427 SQGDWIVCG----EVEGTVVEMGLRRTTI-RAFDNALLSVPNSELAGKPIRNWSRRKVGR 481
Query: 315 RIKTHLAISHLDVHK-INSIVADMRKVLAKNPQV------------EQQRLHRR------ 355
RIK + +++ + V D++++L +P++ + + + ++
Sbjct: 482 RIKMEIGLTYSSSQSALQLCVKDIKEMLENHPKIANGADSALQNASDYRYMFKKDIVSID 541
Query: 356 ----------VFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRAR 405
VFLD + ++ ILV CF KT EE+L VKE ++L ++ ++ H
Sbjct: 542 DFLGYKNNLFVFLDQF--ADSSINILVYCFSKTVVWEEWLEVKEDVMLKIMGIVEKHHLS 599
Query: 406 LATP 409
A P
Sbjct: 600 FAFP 603
>sp|O66994|Y812_AQUAE Uncharacterized MscS family protein aq_812 OS=Aquifex aeolicus
(strain VF5) GN=aq_812 PE=3 SV=1
Length = 368
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 134/266 (50%), Gaps = 13/266 (4%)
Query: 152 FVRSLSTVL---AFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASAS 208
F+++ S ++ A L+ + +FF++ A +G F K + + V V +
Sbjct: 104 FLKTFSLLILGWAIIRFLNLFHNKIVEFFVKVGGKDFAEEVG-DFILKILKAFVVVIVGA 162
Query: 209 LFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGY 268
++ G + L + GL + ++LA ++ F N LS +I +P + E ++ K
Sbjct: 163 SLLQEWGVNIGAILASVGLLGLAVSLAAKDTFENILSGLIILLDKPVKVGETVKVK---- 218
Query: 269 EVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISH-LDV 327
+ G+VE +G S T +R D+ V IPN N V N ++++ R++ ++ + +
Sbjct: 219 DFMGSVEDIGLRS-TKIRTFDKSLVTIPNRDIVNNHVENFTRRNKRRVRFYIGVVYSTKR 277
Query: 328 HKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCV 387
++ +I+ ++R++L ++P V + V+ +N + +L IL+ + T+ +EEYL +
Sbjct: 278 EQLENILKEIRELLKEHPGVAKDE-KFYVYFENYG--DSSLNILIQYYANTNDYEEYLKI 334
Query: 388 KEAILLDLLRVISHHRARLATPIRTV 413
E I L ++ ++ + + A P R+V
Sbjct: 335 IEDINLKIMEIVEKNGSSFAFPSRSV 360
>sp|Q8VZL4|MSL1_ARATH Mechanosensitive ion channel protein 1, mitochondrial
OS=Arabidopsis thaliana GN=MSL1 PE=2 SV=1
Length = 497
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 92/198 (46%), Gaps = 9/198 (4%)
Query: 212 ELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVS 271
E G + Q LT GG+G V A R+I N LS + +RPF + + I+ V
Sbjct: 301 EACGVAVQSILTVGGVGGVATAFAARDILGNVLSGLSMQFSRPFSMGD----TIKAGSVE 356
Query: 272 GTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWR-IKTHLAISHLDVHKI 330
G V +G + +++ E + V +PN F+ V+ N S ++ WR I + + + D+ I
Sbjct: 357 GQVIEMGLTTTSLLNAE-KFPVLVPNSLFSSQVIVNKS-RAQWRAIASKIPLQIDDLDMI 414
Query: 331 NSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEA 390
I +++++L N +V + +L + L I C + EE ++
Sbjct: 415 PQISNEIKEMLRSNTKVFLGKEAPHCYLSRVEKSFAELTI--GCNLIRMGKEELYNTQQE 472
Query: 391 ILLDLLRVISHHRARLAT 408
+LL+ +++I H L T
Sbjct: 473 VLLEAVKIIKKHGVSLGT 490
>sp|Q58543|MSMJL_METJA Large-conductance mechanosensitive channel MscMJLR
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1143
PE=1 SV=1
Length = 361
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 78/156 (50%), Gaps = 14/156 (8%)
Query: 232 LTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDRE 291
+ LA + + +N ++ +I +PF + WI T G SG VE +G S T +R D
Sbjct: 179 VALASQNLVSNLIAGLIILTDKPFKIGNWI-TFSGG---SGIVEDIGIRS-TKIRATDNS 233
Query: 292 AVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQ 350
+ +PN K +++N+ K+ W++ T + +++ V KI ++ +L ++P VE +
Sbjct: 234 IIVVPNSKLIDEIIQNVPSKNKWKVSTTIGVTYNTPVEKIRKAEEIIKNILLEHPNVEDE 293
Query: 351 --RLHRRVFLDNINPENQALLILVSCFVKTSHHEEY 384
++ + F D +L I V ++K S + Y
Sbjct: 294 PITVYFKEFGD------WSLNIQVVYYIKNSRYNGY 323
>sp|O07594|YHDY_BACSU Uncharacterized MscS family protein YhdY OS=Bacillus subtilis
(strain 168) GN=yhdY PE=3 SV=1
Length = 371
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/218 (19%), Positives = 95/218 (43%), Gaps = 10/218 (4%)
Query: 193 FAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHAT 252
F K + + S S+ + + ++ GLG + LA ++ +NF +I
Sbjct: 136 FLSKLLRFVIIALSVSVIAQEFNYDVNGFVAGLGLGGLAFALAAKDTISNFFGGIIIITE 195
Query: 253 RPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKS 312
+PF + +W++T V+G+VE + + S T R V +PN ++ + N ++ +
Sbjct: 196 KPFTIGDWVETS----TVTGSVEDITFRS-TRFRTAQGALVTVPNSTLSMEAITNWTRMT 250
Query: 313 HWRIKTHLAISHLD-VHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLIL 371
+I + +S+ + + + +R +L ++ V+ + + V D L
Sbjct: 251 KRQITFSIHVSYATPIENLERSIHSLRTMLLEHEGVDNEII--MVNFDTFADSYYNLFF- 307
Query: 372 VSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATP 409
+ + KT+ E L ++E I ++ ++ + A P
Sbjct: 308 -NFYTKTTVWAENLNIREDINYKIIEILGAEGVQFAYP 344
>sp|P42531|Y1270_CORGL Uncharacterized protein Cgl1270/cg1434 OS=Corynebacterium
glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 /
LMG 3730 / NCIMB 10025) GN=Cgl1270 PE=4 SV=2
Length = 491
Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 66/163 (40%), Gaps = 11/163 (6%)
Query: 178 METTDSGDARNMGFQFAGKAVYSAVWVASASLF---MELLGFSTQKWLTAGGLGTVLLTL 234
+E+ D FAG VY A VA L M+ GFS + + + L
Sbjct: 8 VESAADADTTKNQLAFAGVGVYIAQIVAFFMLAVSAMQAFGFSLAGAAIPATIASAAIGL 67
Query: 235 AGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVH 294
+ I +FL+ I + F + +W++ + G V GTV + + T +R +E V
Sbjct: 68 GAQSIVADFLAGFFILTEKQFGVGDWVRFEGNGIVVEGTVIEITMRA-TKIRTIAQETVI 126
Query: 295 IPNH--KFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVA 335
IPN K +N N S R + I L I ++A
Sbjct: 127 IPNSTAKVCINNSNNWS-----RAVVVIPIPMLGSENITDVIA 164
>sp|Q57634|MSMJS_METJA Small-conductance mechanosensitive channel MscMJ
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0170
PE=1 SV=1
Length = 350
Score = 40.8 bits (94), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 13/174 (7%)
Query: 242 NFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFT 301
NF++ +I +PF L W+ K++G E G VE +G S T +R D + IPN +
Sbjct: 182 NFIAGILILIDKPFSLGHWV--KVKGAE--GIVEEIGIRS-TRIRTFDYTLITIPNSELL 236
Query: 302 VNVVRNLSQKSHWRIKTHLAISH-LDVHKINSIVADMRKVLAKNP-QVEQQRLHRRVFLD 359
+ + NL+ + R+ + +++ V KI +++++ +P + R+H R + D
Sbjct: 237 DSAIENLTVRDRRRVLMTIGLTYNTPVEKIKRAKEIIKEIVENHPATLPPYRVHFREYGD 296
Query: 360 NINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTV 413
+L + V FV+ + YL + I L + +A P TV
Sbjct: 297 ------WSLNLRVEYFVRNMGFDYYLNAVDEINLKIKEEFEKEGIEMAFPTYTV 344
>sp|Q6A026|PDS5A_MOUSE Sister chromatid cohesion protein PDS5 homolog A OS=Mus musculus
GN=Pds5a PE=3 SV=3
Length = 1332
Score = 36.6 bits (83), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 79/173 (45%), Gaps = 30/173 (17%)
Query: 466 RSSGEQDGKTTPRLTPDVKADSKVSVSSKSDSKADAKIPEAPNSDTREDKNGAAAHMSDP 525
RS+G + G ++ A+S++S S+ S S+ + EA + E++ +S
Sbjct: 1157 RSAGTETGS-------NINANSELSPSAGSRSREQSS--EASETGVSENEENPVRIISVT 1207
Query: 526 KVADKVTVKSTSKSFPKTKSKVAEISSSEPK---VLGSTSDNPTK-DRKVSDS------- 574
V + TVK+ K +S ISS K V + ++N K D KV +S
Sbjct: 1208 PVKNIDTVKN--KEINSDQSTQGNISSDRGKKRIVTAAGAENIQKPDEKVDESGPPAPSK 1265
Query: 575 ----KQPKIVGQGNATQNSKIDNPSISSSGGSDKAGGLQESKQESN-KLPSTQ 622
++PK QGNAT+N ++ P S G +A G QES + N K P Q
Sbjct: 1266 PRRGRRPKSESQGNATKNDDLNKP---VSKGRKRAAGSQESLEAGNAKAPKLQ 1315
>sp|P39955|SAP1_YEAST Protein SAP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SAP1 PE=1 SV=1
Length = 897
Score = 33.5 bits (75), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 84/195 (43%), Gaps = 36/195 (18%)
Query: 474 KTTPRLTPDVKADSKVSVSSKSDSKADAKIPEAPNSDTREDKNGAAAH---MSDPKVADK 530
K+TP K+++K + S + S + PNS ++ K A A ++ KVA
Sbjct: 404 KSTPTFITRSKSNTKPIIKSNASSPTSSLT--VPNSVIQKPKTAAMAAKRVLNSKKVASN 461
Query: 531 VTVKSTSKSFPKTKSKVAEISSSEPKVLGSTSDNPTKDRKVSDSK-------QPKIVGQG 583
+ +T KS P KSK A++ +S K TS +P+ R VS+SK Q K +
Sbjct: 462 PALNTTKKSHPILKSKTAKVPNSSSK---KTSSHPS--RPVSNSKPYSHGASQNKKPSKN 516
Query: 584 NATQNS----------KIDNPSISSSGGSD---KAGGLQESKQESNKLPSTQPPVSRPAL 630
T S KI +P I G D A L E ++E P V R L
Sbjct: 517 QTTSMSKTNRKIPAQKKIGSPKIEDVGTEDATEHATSLNEQREE----PEIDKKVLREIL 572
Query: 631 EENIVLGVALEGSKR 645
E+ I+ +L+G R
Sbjct: 573 EDEII--DSLQGVDR 585
>sp|A4L9P7|PDS5A_RAT Sister chromatid cohesion protein PDS5 homolog A OS=Rattus norvegicus
GN=Pds5a PE=2 SV=1
Length = 1333
Score = 33.1 bits (74), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 565 PTKDRKVSDSKQPKIVGQGNATQNSKIDNPSISSSGGSDKAGGLQESKQESN-KLPSTQ 622
P+K R+ ++PK QGNAT+N + P S G +A G QES + N K P Q
Sbjct: 1264 PSKPRR---GRRPKSESQGNATKNDDLSKP---VSKGRKRAAGSQESLEAGNAKAPKLQ 1316
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 252,217,778
Number of Sequences: 539616
Number of extensions: 10543959
Number of successful extensions: 31900
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 566
Number of HSP's that attempted gapping in prelim test: 25917
Number of HSP's gapped (non-prelim): 4166
length of query: 699
length of database: 191,569,459
effective HSP length: 125
effective length of query: 574
effective length of database: 124,117,459
effective search space: 71243421466
effective search space used: 71243421466
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 65 (29.6 bits)