Query 005371
Match_columns 699
No_of_seqs 309 out of 2174
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 22:24:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005371.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005371hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10334 mechanosensitive chan 100.0 3.9E-43 8.6E-48 370.0 36.7 250 150-417 29-279 (286)
2 PRK11465 putative mechanosensi 100.0 1.4E-39 3.1E-44 374.8 43.6 287 110-412 425-721 (741)
3 PRK11281 hypothetical protein; 100.0 2.4E-39 5.3E-44 387.7 40.4 251 149-416 836-1089(1113)
4 PRK10929 putative mechanosensi 100.0 1.3E-38 2.8E-43 380.3 43.4 252 149-417 833-1087(1109)
5 COG3264 Small-conductance mech 100.0 1.1E-34 2.4E-39 332.2 38.7 250 150-416 559-811 (835)
6 PF00924 MS_channel: Mechanose 100.0 1.2E-35 2.5E-40 296.2 22.7 203 196-406 2-206 (206)
7 COG0668 MscS Small-conductance 100.0 3.7E-33 8E-38 293.4 36.1 211 190-414 82-296 (316)
8 KOG4629 Predicted mechanosensi 99.8 2.6E-18 5.7E-23 197.9 13.8 218 190-414 479-699 (714)
9 PRK10263 DNA translocase FtsK; 88.2 9.7 0.00021 48.7 15.4 14 296-309 245-258 (1355)
10 COG0053 MMT1 Predicted Co/Zn/C 84.6 66 0.0014 35.0 18.1 34 313-346 244-278 (304)
11 PRK02509 hypothetical protein; 81.5 1.1E+02 0.0024 38.4 19.8 18 45-62 144-161 (973)
12 PF03699 UPF0182: Uncharacteri 79.3 1.4E+02 0.0029 37.0 19.5 24 194-217 247-270 (774)
13 PRK11465 putative mechanosensi 77.3 1.8E+02 0.004 35.7 19.7 26 190-215 422-447 (741)
14 PF12794 MscS_TM: Mechanosensi 76.0 1E+02 0.0022 34.1 16.1 44 190-233 121-166 (340)
15 PRK12438 hypothetical protein; 75.4 1.2E+02 0.0025 38.4 17.7 12 252-263 333-345 (991)
16 TIGR01654 bact_immun_7tm bacte 75.0 1.5E+02 0.0032 35.8 18.4 11 339-349 403-413 (679)
17 PRK05886 yajC preprotein trans 72.2 13 0.00029 34.7 6.8 37 255-295 39-75 (109)
18 PRK11281 hypothetical protein; 71.0 75 0.0016 40.7 15.0 23 191-213 616-638 (1113)
19 COG4956 Integral membrane prot 69.6 73 0.0016 35.1 12.5 19 152-170 45-63 (356)
20 PRK00068 hypothetical protein; 68.3 1.4E+02 0.003 37.8 16.0 16 391-406 536-551 (970)
21 PRK05585 yajC preprotein trans 68.1 14 0.00031 34.2 6.1 41 254-298 52-92 (106)
22 TIGR00739 yajC preprotein tran 67.1 17 0.00037 32.2 6.1 38 254-295 37-74 (84)
23 PRK10929 putative mechanosensi 66.8 1.5E+02 0.0032 38.1 16.3 17 101-117 588-604 (1109)
24 COG2274 SunT ABC-type bacterio 66.1 2.9E+02 0.0062 33.9 18.0 42 204-245 281-322 (709)
25 COG1033 Predicted exporters of 64.9 3.1E+02 0.0067 33.7 17.9 23 213-235 315-337 (727)
26 PF12794 MscS_TM: Mechanosensi 64.8 2.3E+02 0.0049 31.4 17.2 29 192-220 194-223 (340)
27 PRK09554 feoB ferrous iron tra 63.7 1.7E+02 0.0038 36.0 15.8 58 191-248 509-592 (772)
28 COG1862 YajC Preprotein transl 63.5 24 0.00052 32.3 6.5 41 255-299 44-84 (97)
29 COG1480 Predicted membrane-ass 62.4 3.6E+02 0.0078 32.9 17.7 10 353-362 529-538 (700)
30 PRK10334 mechanosensitive chan 60.3 1.7E+02 0.0038 31.5 13.5 15 332-346 252-266 (286)
31 COG3264 Small-conductance mech 56.3 4.9E+02 0.011 32.5 19.0 22 194-215 511-532 (835)
32 COG1377 FlhB Flagellar biosynt 55.7 3.5E+02 0.0075 30.6 17.9 16 390-405 296-311 (363)
33 PF07331 TctB: Tripartite tric 55.4 1.4E+02 0.0031 27.9 10.6 28 194-221 72-99 (141)
34 PF04791 LMBR1: LMBR1-like mem 55.1 3.7E+02 0.0079 30.6 16.0 11 193-203 119-129 (471)
35 COG2274 SunT ABC-type bacterio 52.6 5.3E+02 0.011 31.7 17.2 41 192-233 384-424 (709)
36 PF03030 H_PPase: Inorganic H+ 51.7 5.3E+02 0.012 31.5 17.3 30 150-179 74-103 (682)
37 PF05297 Herpes_LMP1: Herpesvi 51.7 4.9 0.00011 43.3 0.0 16 210-225 128-143 (381)
38 PF14348 DUF4400: Domain of un 51.3 1.8E+02 0.0039 29.4 11.2 75 165-243 122-197 (198)
39 TIGR01654 bact_immun_7tm bacte 48.2 5.3E+02 0.011 31.3 16.3 13 86-98 187-199 (679)
40 PF11449 DUF2899: Protein of u 47.8 2.2E+02 0.0047 31.3 11.6 43 190-232 178-224 (298)
41 PRK12911 bifunctional preprote 46.7 2.2E+02 0.0047 37.2 12.8 24 194-217 1007-1030(1403)
42 PRK06531 yajC preprotein trans 45.4 54 0.0012 30.9 5.8 38 255-296 37-75 (113)
43 COG1269 NtpI Archaeal/vacuolar 45.2 6.3E+02 0.014 30.7 16.2 9 45-53 329-337 (660)
44 PRK10263 DNA translocase FtsK; 44.7 8E+02 0.017 32.4 17.3 11 213-223 178-188 (1355)
45 COG4956 Integral membrane prot 43.0 3.6E+02 0.0078 30.0 12.2 22 70-91 45-66 (356)
46 PRK12438 hypothetical protein; 42.3 8.5E+02 0.018 31.2 20.6 12 191-202 165-176 (991)
47 PF09953 DUF2187: Uncharacteri 41.9 43 0.00092 27.9 4.0 27 255-285 4-30 (57)
48 COG1459 PulF Type II secretory 41.4 5.6E+02 0.012 29.2 14.2 32 109-140 157-188 (397)
49 PRK10845 colicin V production 41.3 3.6E+02 0.0079 26.6 14.5 58 155-213 65-122 (162)
50 PRK03557 zinc transporter ZitB 41.2 5E+02 0.011 28.2 15.0 13 332-344 267-279 (312)
51 PF05552 TM_helix: Conserved T 40.5 43 0.00093 26.8 3.8 35 147-182 13-47 (53)
52 PF06442 DHFR_2: R67 dihydrofo 40.4 37 0.0008 28.9 3.5 42 240-285 8-50 (78)
53 PRK11462 putative transporter; 40.2 5.7E+02 0.012 28.9 14.3 19 93-111 66-84 (460)
54 PF14545 DBB: Dof, BCAP, and B 39.6 95 0.0021 30.4 6.7 83 247-335 15-98 (142)
55 COG0370 FeoB Fe2+ transport sy 38.4 8.2E+02 0.018 29.8 16.9 58 191-248 498-577 (653)
56 PF15420 Abhydrolase_9_N: Alph 37.8 4.8E+02 0.01 27.0 15.7 34 63-97 7-40 (208)
57 smart00739 KOW KOW (Kyprides, 37.8 55 0.0012 22.0 3.6 25 254-278 1-26 (28)
58 PF09926 DUF2158: Uncharacteri 37.3 33 0.00071 28.0 2.7 23 255-279 1-23 (53)
59 COG4425 Predicted membrane pro 37.0 7.5E+02 0.016 29.0 14.0 21 47-67 35-55 (588)
60 PRK00409 recombination and DNA 36.7 2E+02 0.0043 35.6 10.4 46 253-301 635-680 (782)
61 PF02699 YajC: Preprotein tran 35.3 13 0.00029 32.7 0.1 39 253-295 35-73 (82)
62 PF06011 TRP: Transient recept 35.0 7.2E+02 0.016 28.2 15.3 18 245-262 367-384 (438)
63 TIGR00833 actII Transport prot 34.8 1E+03 0.022 29.9 17.5 26 209-234 293-318 (910)
64 KOG4016 Synaptic vesicle prote 34.7 1.5E+02 0.0032 31.1 7.4 70 188-259 104-174 (233)
65 PRK13692 (3R)-hydroxyacyl-ACP 34.3 1.3E+02 0.0028 29.5 6.9 16 248-263 90-105 (159)
66 COG1283 NptA Na+/phosphate sym 33.3 9E+02 0.019 28.8 15.7 9 391-399 350-358 (533)
67 PF06123 CreD: Inner membrane 33.2 5.8E+02 0.013 29.4 12.7 20 214-233 398-417 (430)
68 PRK08156 type III secretion sy 33.0 7.6E+02 0.016 27.9 17.2 15 391-405 285-299 (361)
69 PRK00068 hypothetical protein; 32.7 1.2E+03 0.025 29.9 20.3 12 191-202 163-174 (970)
70 COG1230 CzcD Co/Zn/Cd efflux s 32.4 7.1E+02 0.015 27.4 12.8 24 187-210 156-179 (296)
71 PRK12911 bifunctional preprote 32.3 8.7E+02 0.019 32.1 14.9 27 192-218 1338-1364(1403)
72 TIGR01129 secD protein-export 32.0 8E+02 0.017 27.9 14.6 7 209-215 361-367 (397)
73 COG4873 Uncharacterized protei 32.0 52 0.0011 28.2 3.1 28 254-285 23-50 (81)
74 PF01914 MarC: MarC family int 30.7 3.8E+02 0.0083 27.4 9.9 32 203-234 54-85 (203)
75 TIGR00427 membrane protein, Ma 30.6 3.1E+02 0.0068 28.1 9.2 34 202-235 56-89 (201)
76 PF11674 DUF3270: Protein of u 30.5 2.7E+02 0.0059 25.3 7.6 49 191-239 39-87 (90)
77 PF14801 GCD14_N: tRNA methylt 30.1 30 0.00064 28.5 1.3 24 252-279 3-26 (54)
78 PF13726 Na_H_antiport_2: Na+- 29.9 82 0.0018 28.5 4.2 45 203-247 5-50 (88)
79 PRK10739 putative antibiotic t 29.8 3.9E+02 0.0085 27.4 9.7 35 201-235 52-86 (197)
80 PRK05812 secD preprotein trans 29.4 8.2E+02 0.018 28.8 13.4 16 201-216 438-453 (498)
81 KOG2568 Predicted membrane pro 29.4 1E+03 0.022 28.2 16.5 12 191-202 378-389 (518)
82 PF12961 DUF3850: Domain of Un 29.2 1.1E+02 0.0025 26.6 4.8 31 251-281 25-56 (72)
83 PRK15083 PTS system mannitol-s 29.2 1E+03 0.022 28.7 14.6 26 111-136 49-74 (639)
84 COG4705 Uncharacterized membra 29.1 7E+02 0.015 26.3 16.3 52 212-263 162-217 (258)
85 TIGR00844 c_cpa1 na(+)/h(+) an 29.0 1.2E+03 0.027 29.1 18.8 15 649-663 778-792 (810)
86 PRK03612 spermidine synthase; 28.3 1E+03 0.022 27.9 20.7 31 194-224 153-183 (521)
87 PF00575 S1: S1 RNA binding do 27.8 3E+02 0.0065 22.6 7.2 46 255-310 2-47 (74)
88 cd03452 MaoC_C MaoC_C The C-t 27.4 94 0.002 29.5 4.5 16 248-263 82-97 (142)
89 PRK13023 bifunctional preprote 27.2 1.3E+03 0.028 28.7 16.3 21 197-217 379-399 (758)
90 TIGR00844 c_cpa1 na(+)/h(+) an 27.2 1.2E+03 0.026 29.2 14.6 26 394-419 420-452 (810)
91 cd03454 YdeM YdeM is a Bacillu 27.1 1.3E+02 0.0028 28.0 5.4 16 248-263 82-97 (140)
92 TIGR00437 feoB ferrous iron tr 27.1 1.1E+03 0.025 28.1 18.3 58 191-248 473-550 (591)
93 PF09378 HAS-barrel: HAS barre 27.1 55 0.0012 28.3 2.7 27 254-280 22-49 (91)
94 PF05297 Herpes_LMP1: Herpesvi 26.7 21 0.00047 38.6 0.0 8 198-205 177-184 (381)
95 PRK05702 flhB flagellar biosyn 26.2 7.7E+02 0.017 27.7 12.0 113 66-178 88-215 (359)
96 KOG3609 Receptor-activated Ca2 26.2 1.4E+03 0.03 28.7 15.9 29 101-129 454-482 (822)
97 COG1457 CodB Purine-cytosine p 26.1 1.1E+03 0.023 27.4 13.9 21 113-133 156-176 (442)
98 PRK09824 PTS system beta-gluco 26.1 1.2E+03 0.027 28.2 18.1 29 107-135 141-169 (627)
99 COG2142 SdhD Succinate dehydro 26.0 5.8E+02 0.013 24.2 10.5 26 62-87 13-38 (117)
100 COG1329 Transcriptional regula 25.7 1.4E+02 0.003 30.0 5.4 46 254-302 4-57 (166)
101 COG1030 NfeD Membrane-bound se 25.4 4.2E+02 0.0091 30.6 9.7 11 109-119 225-235 (436)
102 PF02559 CarD_CdnL_TRCF: CarD- 25.2 1.8E+02 0.0039 25.9 5.7 44 254-300 1-51 (98)
103 PF05437 AzlD: Branched-chain 25.2 4.9E+02 0.011 23.1 8.7 26 225-250 70-95 (99)
104 PRK04439 S-adenosylmethionine 25.1 2.3E+02 0.005 32.3 7.6 80 317-402 156-244 (399)
105 PLN03159 cation/H(+) antiporte 24.9 1.4E+03 0.031 28.5 17.5 8 210-217 287-294 (832)
106 PRK05415 hypothetical protein; 24.7 1E+03 0.022 26.7 19.8 59 159-221 227-289 (341)
107 PF09323 DUF1980: Domain of un 24.5 2.4E+02 0.0052 28.2 7.0 14 196-209 73-86 (182)
108 PF04156 IncA: IncA protein; 24.0 2.2E+02 0.0047 28.3 6.6 11 224-234 40-50 (191)
109 PRK11715 inner membrane protei 23.3 1.2E+03 0.026 27.0 13.6 21 213-233 403-423 (436)
110 TIGR00917 2A060601 Niemann-Pic 23.2 4.9E+02 0.011 33.9 11.0 26 196-221 1079-1104(1204)
111 KOG3386 Copper transporter [In 23.2 7.4E+02 0.016 24.6 10.4 43 190-234 93-135 (155)
112 PRK08343 secD preprotein trans 23.0 1E+03 0.022 27.3 12.4 20 197-216 362-381 (417)
113 PRK09509 fieF ferrous iron eff 23.0 9.5E+02 0.021 25.7 21.0 31 314-344 243-274 (299)
114 PF07290 DUF1449: Protein of u 22.9 6.9E+02 0.015 25.9 10.0 12 116-127 62-73 (202)
115 PF14221 DUF4330: Domain of un 22.8 1.2E+02 0.0026 30.3 4.4 43 255-298 72-117 (168)
116 cd03453 SAV4209_like SAV4209_l 22.8 2.1E+02 0.0046 26.3 5.9 16 248-263 74-89 (127)
117 PRK11111 hypothetical protein; 22.7 4.9E+02 0.011 27.0 9.0 34 202-235 59-92 (214)
118 PF01941 AdoMet_Synthase: S-ad 22.6 3.1E+02 0.0067 31.3 7.9 80 317-402 156-244 (396)
119 COG0342 SecD Preprotein transl 22.4 3.5E+02 0.0077 31.8 8.7 29 203-235 378-406 (506)
120 PLN03223 Polycystin cation cha 22.3 8.8E+02 0.019 32.2 12.4 131 68-214 1284-1414(1634)
121 PRK10694 acyl-CoA esterase; Pr 22.2 1.1E+02 0.0023 29.3 3.9 30 248-285 61-90 (133)
122 TIGR00921 2A067 The (Largely A 22.2 1.4E+03 0.03 27.4 17.6 11 224-234 323-333 (719)
123 PRK09459 pspG phage shock prot 22.2 1.9E+02 0.004 25.6 4.8 28 202-229 5-32 (76)
124 PF02933 CDC48_2: Cell divisio 21.9 1.6E+02 0.0036 24.2 4.4 30 250-279 14-43 (64)
125 PF08566 Pam17: Mitochondrial 21.8 3E+02 0.0064 28.0 6.9 34 213-246 71-104 (173)
126 TIGR02120 GspF general secreti 21.7 1.1E+03 0.024 26.1 15.0 31 109-139 160-190 (399)
127 PRK10995 inner membrane protei 21.5 6.7E+02 0.015 25.9 9.8 33 202-234 57-89 (221)
128 PRK08156 type III secretion sy 21.4 9.4E+02 0.02 27.1 11.5 24 151-174 176-199 (361)
129 PF09726 Macoilin: Transmembra 21.4 9.9E+02 0.021 29.4 12.4 146 72-244 27-178 (697)
130 PRK12933 secD preprotein trans 21.3 1.2E+03 0.026 28.2 12.8 15 202-216 547-561 (604)
131 cd04466 S1_YloQ_GTPase S1_YloQ 21.3 1.7E+02 0.0037 23.8 4.4 31 253-285 36-66 (68)
132 COG4317 Uncharacterized protei 21.2 2.8E+02 0.0061 24.9 5.7 43 204-246 13-55 (93)
133 PF10842 DUF2642: Protein of u 21.2 3.1E+02 0.0068 23.5 5.9 43 257-301 20-62 (66)
134 PF13452 MaoC_dehydrat_N: N-te 21.1 1.9E+02 0.0041 26.6 5.2 24 240-263 73-96 (132)
135 TIGR00328 flhB flagellar biosy 21.0 1E+03 0.022 26.6 11.7 117 66-182 81-212 (347)
136 COG4988 CydD ABC-type transpor 20.9 1.1E+03 0.025 28.1 12.4 134 115-248 1-176 (559)
137 PF00467 KOW: KOW motif; Inte 20.8 1.6E+02 0.0035 21.1 3.6 23 257-280 1-25 (32)
138 PF08611 DUF1774: Fungal prote 20.7 2E+02 0.0044 26.5 5.0 38 213-250 26-64 (97)
139 PRK13889 conjugal transfer rel 20.7 1.5E+02 0.0033 37.6 5.6 47 253-300 599-651 (988)
140 COG0591 PutP Na+/proline sympo 20.7 1.3E+03 0.029 26.6 13.8 12 233-244 177-188 (493)
141 TIGR00870 trp transient-recept 20.5 8.2E+02 0.018 29.6 11.8 16 220-235 510-525 (743)
142 PF01810 LysE: LysE type trans 20.5 8E+02 0.017 23.9 14.2 18 193-210 171-188 (191)
143 PF03699 UPF0182: Uncharacteri 20.4 1.7E+03 0.037 27.8 20.8 10 58-67 33-42 (774)
144 PF06570 DUF1129: Protein of u 20.2 9.2E+02 0.02 24.5 11.2 11 29-39 43-53 (206)
145 COG1615 Uncharacterized conser 20.2 1.7E+03 0.038 27.7 15.3 12 251-263 309-320 (885)
146 TIGR00954 3a01203 Peroxysomal 20.2 1.6E+03 0.034 27.1 16.4 11 629-639 530-540 (659)
147 PRK15083 PTS system mannitol-s 20.1 1.6E+03 0.034 27.2 15.3 13 393-405 397-409 (639)
148 PRK08559 nusG transcription an 20.1 3E+02 0.0065 26.9 6.5 47 253-300 93-145 (153)
149 cd03441 R_hydratase_like (R)-h 20.0 2.4E+02 0.0052 25.2 5.5 19 245-263 71-89 (127)
No 1
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=100.00 E-value=3.9e-43 Score=369.96 Aligned_cols=250 Identities=18% Similarity=0.245 Sum_probs=223.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Q 005371 150 LNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGT 229 (699)
Q Consensus 150 l~~l~siliIl~~~~ll~~li~~i~~~l~~~~~~~~~r~~~i~~i~~ii~iiv~iia~iiiL~~lGv~i~~lLa~lGv~g 229 (699)
++++.+++ +++++|++.+++..+.+.+..+.. .+.....++.+++++++++++++++|..+|++++++++++|++|
T Consensus 29 ~~i~~al~-il~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~l~~lGi~~~~l~a~~G~~g 104 (286)
T PRK10334 29 VNIVAALA-IIIVGLIIARMISNAVNRLMISRK---IDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAG 104 (286)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 34444444 556688888988876665554432 23345668899999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHhhhhhhccCCccCCcEEEEeecCCCeeEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEecc
Q 005371 230 VLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLS 309 (699)
Q Consensus 230 laIglAaqd~l~Ni~aGi~I~~~rPFrIGD~I~Iki~~~~~~G~VeeIgL~sTT~IRt~Dg~~ViIPNs~l~s~~I~N~S 309 (699)
+++|||+|++++|++||++|+++|||++||||++ ++.+|+|++|+||+ |+||++||+.++|||+.+.++.|+|||
T Consensus 105 laiG~a~q~~l~N~~sGi~i~~~rpf~vGD~I~i----~~~~G~V~~I~~r~-T~i~t~d~~~v~IPNs~~~~~~i~N~s 179 (286)
T PRK10334 105 LAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDL----GGVAGTVLSVQIFS-TTMRTADGKIIVIPNGKIIAGNIINFS 179 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEE----CCEEEEEEEEEeEE-EEEEcCCCCEEEEcchHhcCCeeEEcC
Confidence 9999999999999999999999999999999999 78999999999999 999999999999999999999999999
Q ss_pred CCCceEEEEEEEecc-CCHHHHHHHHHHHHHHHHhCCCccccccceEEEEEeeCCCCceEEEEEEEEEecCChhhHHHHH
Q 005371 310 QKSHWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVK 388 (699)
Q Consensus 310 r~~~~ri~i~l~I~y-td~ekv~~l~~~i~e~L~~~p~v~~~~~~p~V~v~~~~~~d~sv~i~V~~~v~~~~~~~~~~vr 388 (699)
+.+.+|+.+.++++| +|++++++ .++++++++|.+..++ .|.|.+.++++ ++++++++||+++.+ ++.++
T Consensus 180 ~~~~rr~~~~v~V~y~~d~~~~~~---il~~~~~~~~~vl~~p-~p~v~~~~~~d--ssi~~~v~~wv~~~~---~~~~~ 250 (286)
T PRK10334 180 REPVRRNEFIIGVAYDSDIDQVKQ---ILTNIIQSEDRILKDR-EMTVRLNELGA--SSINFVVRVWSNSGD---LQNVY 250 (286)
T ss_pred CCCeEEEEEEEEecCCCCHHHHHH---HHHHHHHhCCceecCC-CCEEEEEeeeC--ceEEEEEEEEEecch---hHHHH
Confidence 988889999999999 99999999 4678889999999887 78999999995 899999999999864 57899
Q ss_pred HHHHHHHHHHHHHCCCccCCCcEEEEEee
Q 005371 389 EAILLDLLRVISHHRARLATPIRTVQKIF 417 (699)
Q Consensus 389 ~eL~~~Il~~~~e~GIe~a~P~qtv~~~~ 417 (699)
.+++++|+++|+++||++|||+|+++...
T Consensus 251 ~~~~~~I~~~f~~~gI~ip~p~~~v~~~~ 279 (286)
T PRK10334 251 WDVLERIKREFDAAGISFPYPQMDVNFKR 279 (286)
T ss_pred HHHHHHHHHHHHHCCCcCCCCCeEEEecc
Confidence 99999999999999999999999988553
No 2
>PRK11465 putative mechanosensitive channel protein; Provisional
Probab=100.00 E-value=1.4e-39 Score=374.82 Aligned_cols=287 Identities=11% Similarity=0.110 Sum_probs=223.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhc----CCc
Q 005371 110 HVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQ-AQKFFMETT----DSG 184 (699)
Q Consensus 110 ~il~sl~~Pl~l~l~~i~i~~al~~l~lp~~~~~~v~~~ll~~l~siliIl~~~~ll~~li~~-i~~~l~~~~----~~~ 184 (699)
.+++.++ |+.+++++++++.++..+.+..+........+...+..++++++++++++.+.+. +.+++.+.. ...
T Consensus 425 ~~l~~lr-~l~~~~~vl~ll~a~~~l~l~~~~~~~~g~~~i~~l~~i~iil~i~~v~w~l~~~~ie~~l~~~~~~~~~~~ 503 (741)
T PRK11465 425 AALKTAR-ILTVCVAVMLLLNAWGLFDFWNWLQNGAGEKTVDILIRIALILFFSAVGWTVLASLIENRLASDIHGRPLPS 503 (741)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHhcchHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhh
Confidence 4555555 8888777877877776554433211111222333343333344333333333332 223332211 111
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhccCCccCCcEEEEe
Q 005371 185 DARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTK 264 (699)
Q Consensus 185 ~~r~~~i~~i~~ii~iiv~iia~iiiL~~lGv~i~~lLa~lGv~glaIglAaqd~l~Ni~aGi~I~~~rPFrIGD~I~Ik 264 (699)
.+..+...++++++++++++++++++|+.+|++++++++++|++|+++|||+|++++|+++|++|++++||++||||++
T Consensus 504 ~r~~Tl~~ll~~~~~~~i~~i~~l~vL~~lGi~it~LlA~aGi~GlaiGfaaQ~~l~N~isGi~Il~e~pf~vGD~I~v- 582 (741)
T PRK11465 504 ARTRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDIITGVFIQFENGMNTGDLVTI- 582 (741)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCEEEE-
Confidence 2245678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCeeEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEeccCCCceEEEEEEEecc-CCHHHHHHHHHHHHHHHHh
Q 005371 265 IEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISH-LDVHKINSIVADMRKVLAK 343 (699)
Q Consensus 265 i~~~~~~G~VeeIgL~sTT~IRt~Dg~~ViIPNs~l~s~~I~N~Sr~~~~ri~i~l~I~y-td~ekv~~l~~~i~e~L~~ 343 (699)
++++|+||+|++|+ |+||++||+.++|||+.+.+ |+||++. ..++.+.++|+| +|+|+++++++++.+.+.+
T Consensus 583 ---~g~~GtVe~I~lRs-T~iRt~dg~~i~IPNs~i~~--v~N~Sr~-~~~~~v~v~V~Y~~Didka~~iL~ev~~el~~ 655 (741)
T PRK11465 583 ---GPLTGTVERMSIRS-VGVRQDTGAYHIIPWSSITT--FANFVRG-IGSVVANYDVDRHEDADKANQALKDAVAELME 655 (741)
T ss_pred ---CCeEEEEEEEeeeE-EEEEcCCCCEEEEECCccee--eEEeccC-ceEEEEEEEeCCCCCHHHHHHHHHHHHHHhhc
Confidence 78999999999999 99999999999999999975 9999985 667888999999 9999999999888888888
Q ss_pred CCCc----cccccceEEEEEeeCCCCceEEEEEEEEEecCChhhHHHHHHHHHHHHHHHHHHCCCccCCCcEE
Q 005371 344 NPQV----EQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRT 412 (699)
Q Consensus 344 ~p~v----~~~~~~p~V~v~~~~~~d~sv~i~V~~~v~~~~~~~~~~vr~eL~~~Il~~~~e~GIe~a~P~qt 412 (699)
+|++ ..++ +.+.+.++++ +++++++++|+++. ++|.++.+++++|++.|+++||++++|+..
T Consensus 656 dpe~~~~il~~p--~~vgV~~lgd--Ssi~lrvr~~t~p~---~qw~v~rel~~~IK~~Fde~GIeIP~~tv~ 721 (741)
T PRK11465 656 NEEIRGLIIGEP--NFAGIVGLTN--TAFTLRVSFTTLPL---KQWTVRFALDSQVKKHFDLAGVRAPVQTYQ 721 (741)
T ss_pred CccccccccCCC--CeEEEEEecC--ceEEEEEEEEECcc---hHHHHHHHHHHHHHHHHHHCCCCCCCCceE
Confidence 8864 3333 3577889984 79999999999764 568899999999999999999998766655
No 3
>PRK11281 hypothetical protein; Provisional
Probab=100.00 E-value=2.4e-39 Score=387.67 Aligned_cols=251 Identities=20% Similarity=0.213 Sum_probs=221.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Q 005371 149 LLNFVRSLSTVLAFAYCLSSLIQQAQKFFM-ETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGL 227 (699)
Q Consensus 149 ll~~l~siliIl~~~~ll~~li~~i~~~l~-~~~~~~~~r~~~i~~i~~ii~iiv~iia~iiiL~~lGv~i~~lLa~lGv 227 (699)
+.+++.++ ++++++|++.+++..+.+.+. .+... +.....++.+++++++|++++++++..+|++.+++.+.+|+
T Consensus 836 l~~Ll~al-lIl~i~~~l~r~l~~ll~~~~~~rl~l---~~~~~~~i~~li~y~I~~i~iliaL~~lGi~~t~L~~l~ga 911 (1113)
T PRK11281 836 LGNLLFAL-IILVVTYVLVRNLPGLLEVLVLSRLNL---RQGTSYAITTLLTYIIIAVGAVTAFSTLGVSWDKLQWLVAA 911 (1113)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhccC---CchHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 44544444 455678888888887665433 32221 22234568899999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhhccCCccCCcEEEEeecCCCeeEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEe
Q 005371 228 GTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRN 307 (699)
Q Consensus 228 ~glaIglAaqd~l~Ni~aGi~I~~~rPFrIGD~I~Iki~~~~~~G~VeeIgL~sTT~IRt~Dg~~ViIPNs~l~s~~I~N 307 (699)
+|+++|||+|++++||+||++|+++|||+|||+|+| ++..|+|++|++|+ |+||++||+.|+|||+.|.++.|+|
T Consensus 912 LgVgIGfglQ~ilsNfISGiiIl~eRPfrIGD~I~I----~~~~G~V~~I~lRs-T~Irt~D~~~ViIPNs~~~t~~IiN 986 (1113)
T PRK11281 912 LSVGLGFGLQEIFANFVSGLIILFERPVRIGDTVTI----GTFSGTVSKIRIRA-TTITDFDRKEVIVPNKAFVTERLIN 986 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCEEEE----CCEEEEEEEEEeEE-EEEEcCCCCEEEEechhhhcCceEe
Confidence 999999999999999999999999999999999999 78999999999999 9999999999999999999999999
Q ss_pred ccCCCc-eEEEEEEEecc-CCHHHHHHHHHHHHHHHHhCCCccccccceEEEEEeeCCCCceEEEEEEEEEecCChhhHH
Q 005371 308 LSQKSH-WRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYL 385 (699)
Q Consensus 308 ~Sr~~~-~ri~i~l~I~y-td~ekv~~l~~~i~e~L~~~p~v~~~~~~p~V~v~~~~~~d~sv~i~V~~~v~~~~~~~~~ 385 (699)
||.++. +|+.+.++|+| +|++++++ .+.+++.++|.+..+| +|.|++.+|++ +++.++++||+++. .+++
T Consensus 987 ~S~~~~~~Rv~i~vgV~Y~sDi~~v~~---iL~eaa~~~p~Vl~~P-~P~V~~~~fgd--ssi~~~lr~wv~~~--~~~~ 1058 (1113)
T PRK11281 987 WSLSDTVTRVVIKVGVAYGSDLEKVRE---LLLQAATENPRVMKEP-EPQVFFLNFGA--STLDHELRLYVREL--GDRS 1058 (1113)
T ss_pred CCCCCcceEEEEEEEeCCCCCHHHHHH---HHHHHHHcCcccccCC-CCEEEEEeccC--ceEEEEEEEEEcCH--hhHH
Confidence 999874 78999999999 99999998 5678899999999988 78999999995 89999999999864 5788
Q ss_pred HHHHHHHHHHHHHHHHCCCccCCCcEEEEEe
Q 005371 386 CVKEAILLDLLRVISHHRARLATPIRTVQKI 416 (699)
Q Consensus 386 ~vr~eL~~~Il~~~~e~GIe~a~P~qtv~~~ 416 (699)
.++++++.+|++.|+++||++|||+++||+.
T Consensus 1059 ~v~s~L~~~I~~~f~e~GIeIpfPq~~V~i~ 1089 (1113)
T PRK11281 1059 PTVDELNRRIDRLFRENDINIAFNQLDVFLK 1089 (1113)
T ss_pred HHHHHHHHHHHHHHHHCCCcCCCCCeeEEec
Confidence 9999999999999999999999999998854
No 4
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=100.00 E-value=1.3e-38 Score=380.33 Aligned_cols=252 Identities=14% Similarity=0.156 Sum_probs=221.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Q 005371 149 LLNFVRSLSTVLAFAYCLSSLIQQAQKFFM-ETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGL 227 (699)
Q Consensus 149 ll~~l~siliIl~~~~ll~~li~~i~~~l~-~~~~~~~~r~~~i~~i~~ii~iiv~iia~iiiL~~lGv~i~~lLa~lGv 227 (699)
+.+++.+++ +++++|++.+.+..+.+.+. ++.. .......++.++++++++++++++++..+|++.+++.+.+|+
T Consensus 833 l~~ll~All-Iliv~~~l~r~l~~lle~~l~~~~~---l~~~~~~~i~~l~~y~I~~ig~l~~L~~lGI~~t~l~al~ga 908 (1109)
T PRK10929 833 LGSVLIAIL-VFIITTQLVRNLPALLELALLQHLD---LTPGTGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVAA 908 (1109)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcC---CChhHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 344555444 45567777777777554433 3322 223345678899999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhhccCCccCCcEEEEeecCCCeeEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEe
Q 005371 228 GTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRN 307 (699)
Q Consensus 228 ~glaIglAaqd~l~Ni~aGi~I~~~rPFrIGD~I~Iki~~~~~~G~VeeIgL~sTT~IRt~Dg~~ViIPNs~l~s~~I~N 307 (699)
+|++||||+|++++||+||++|+++|||++||+|+| ++..|+|++|++|+ |+|+++||+.++|||+.|.++.|+|
T Consensus 909 lGVgIGfAlQ~ilsNfiSGIiIL~erPfrVGD~I~I----~~~~GtV~~I~lRs-T~Irt~Dg~~IiIPNs~~it~~IiN 983 (1109)
T PRK10929 909 LGVGLGFGLQEIFANFISGLIILFEKPIRIGDTVTI----RDLTGSVTKINTRA-TTISDWDRKEIIVPNKAFITEQFIN 983 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEE----CCEEEEEEEEeeeE-EEEEeCCCCEEEEEChhhhcCceEe
Confidence 999999999999999999999999999999999999 78999999999999 9999999999999999999999999
Q ss_pred ccCCCc-eEEEEEEEecc-CCHHHHHHHHHHHHHHHHhCCCccccccceEEEEEeeCCCCceEEEEEEEEEecCChhhHH
Q 005371 308 LSQKSH-WRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYL 385 (699)
Q Consensus 308 ~Sr~~~-~ri~i~l~I~y-td~ekv~~l~~~i~e~L~~~p~v~~~~~~p~V~v~~~~~~d~sv~i~V~~~v~~~~~~~~~ 385 (699)
||+.+. +|+.+.++|+| +|+++++++ +.+++.++|.+..+| .|.|++.++++ +++.|+++||++.. .+++
T Consensus 984 ~S~~d~~~Rv~i~VgV~Y~sDie~v~~i---L~eaa~~~~~VL~~P-~P~V~~~~fgd--ssi~~elr~wv~~~--~~~~ 1055 (1109)
T PRK10929 984 WSLSDSVTRVVLTIPAPADANSEEVTEI---LLTAARRCSLVLDNP-APEVFLVDLQQ--GIQIFELRIYAAEM--GHRM 1055 (1109)
T ss_pred cCCCCcceEEEEEEEeCCCCCHHHHHHH---HHHHHHhCccccCCC-CCEEEEEecCC--CceEEEEEEEEcCh--hhHH
Confidence 999885 79999999999 999999994 678899999999887 78999999984 79999999999743 5679
Q ss_pred HHHHHHHHHHHHHHHHCCCccCCCcEEEEEee
Q 005371 386 CVKEAILLDLLRVISHHRARLATPIRTVQKIF 417 (699)
Q Consensus 386 ~vr~eL~~~Il~~~~e~GIe~a~P~qtv~~~~ 417 (699)
.++++++.+|++.|+++||++|||++++|+..
T Consensus 1056 ~v~~el~~~I~~~F~~~GIeIPfPq~~v~i~~ 1087 (1109)
T PRK10929 1056 PLRHEIHQLILAGFREHGIDMPFPPFQMRLES 1087 (1109)
T ss_pred HHHHHHHHHHHHHHHHCCCcCCCCCeEEEeec
Confidence 99999999999999999999999999999663
No 5
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.1e-34 Score=332.18 Aligned_cols=250 Identities=18% Similarity=0.206 Sum_probs=219.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Q 005371 150 LNFVRSLSTVLAFAYCLSSLIQQAQK-FFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLG 228 (699)
Q Consensus 150 l~~l~siliIl~~~~ll~~li~~i~~-~l~~~~~~~~~r~~~i~~i~~ii~iiv~iia~iiiL~~lGv~i~~lLa~lGv~ 228 (699)
..++.++++ +++++++.|.+....+ +++.+.+-+. -.-..+.+++.++++.+++++.++.+|++.+++-..+|.+
T Consensus 559 ~~ll~avl~-~~~~~~l~r~~~~~L~~~vl~r~~~~~---G~r~~I~t~~~Y~~~~i~~l~~lS~~Gi~lssL~~~~gAL 634 (835)
T COG3264 559 GALLQAVLL-FLITYVLTRNLPGWLEVRVLQRLDLDA---GTRYSITTLLGYLLIAIGGLVGLSTLGIDLSSLQWLAGAL 634 (835)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcccCc---chHHHHHHHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHh
Confidence 344555544 4556777777776544 5555543221 1224689999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHhhhhhhccCCccCCcEEEEeecCCCeeEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEec
Q 005371 229 TVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNL 308 (699)
Q Consensus 229 glaIglAaqd~l~Ni~aGi~I~~~rPFrIGD~I~Iki~~~~~~G~VeeIgL~sTT~IRt~Dg~~ViIPNs~l~s~~I~N~ 308 (699)
|+++||++|++++||+||++|+++|||||||||++ |++.|+|.+|+.|+ |+|+++||+-++|||+.|.++.|.||
T Consensus 635 svGiGFGLQ~I~~NFVSGlIiL~ErpvkvGD~It~----g~~~G~V~~I~vRA-T~I~~fd~~~vIVPNs~fI~~qV~NW 709 (835)
T COG3264 635 SVGLGFGLQEIVSNFVSGLIILFERPVKVGDTVTI----GTVSGTVRKISVRA-TTIRTFDRKEVIVPNSAFITEQVINW 709 (835)
T ss_pred hhhhchhHHHHHHHhhhhhhhheecCcccCCEEEE----CCceEEEEEEEeeE-EEEEeCCCCeEEeccHHHHhhheeee
Confidence 99999999999999999999999999999999999 78999999999999 99999999999999999999999999
Q ss_pred cCCC-ceEEEEEEEecc-CCHHHHHHHHHHHHHHHHhCCCccccccceEEEEEeeCCCCceEEEEEEEEEecCChhhHHH
Q 005371 309 SQKS-HWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLC 386 (699)
Q Consensus 309 Sr~~-~~ri~i~l~I~y-td~ekv~~l~~~i~e~L~~~p~v~~~~~~p~V~v~~~~~~d~sv~i~V~~~v~~~~~~~~~~ 386 (699)
+.++ ..|+.+.++++| +|++++++ .+.+.++.||.+.++| +|.|++.+|++ ++++|++++|+....-. ..
T Consensus 710 s~~~~~~R~~i~v~vay~sD~~~V~~---~Ll~~A~~~p~Vl~~P-~P~v~f~~fg~--s~L~fELr~~v~~~~~~--~~ 781 (835)
T COG3264 710 SLRDTTTRLVIPVGVAYGSDPELVRE---LLLEAAREHPRVLKDP-APEVFFTAFGA--SSLDFELRVYVAELGDR--MP 781 (835)
T ss_pred eccCceEEEEEEecccCCCCHHHHHH---HHHHHHHhCCCccCCC-CCeeEeecccc--cceeEEEEEEeeccccc--cc
Confidence 9988 689999999999 99999999 5889999999999999 88999999995 79999999999987433 34
Q ss_pred HHHHHHHHHHHHHHHCCCccCCCcEEEEEe
Q 005371 387 VKEAILLDLLRVISHHRARLATPIRTVQKI 416 (699)
Q Consensus 387 vr~eL~~~Il~~~~e~GIe~a~P~qtv~~~ 416 (699)
++++++..|.+.|+||||+++||++.+++.
T Consensus 782 ~~~~l~~~I~~~fre~gI~ipfpq~~v~l~ 811 (835)
T COG3264 782 VRSELNRAILDRFRENGIEIPFPQREVRLK 811 (835)
T ss_pred hHHHHHHHHHHHHHHcCCCCCCchHheEec
Confidence 999999999999999999999999998855
No 6
>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation. They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.
Probab=100.00 E-value=1.2e-35 Score=296.19 Aligned_cols=203 Identities=25% Similarity=0.414 Sum_probs=170.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhccCCccCCcEEEEeecCCCeeEEEE
Q 005371 196 KAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVE 275 (699)
Q Consensus 196 ~ii~iiv~iia~iiiL~~lGv~i~~lLa~lGv~glaIglAaqd~l~Ni~aGi~I~~~rPFrIGD~I~Iki~~~~~~G~Ve 275 (699)
++++++++++++++++..+|++...+++++|++|+++|||+|++++|+++|++|++++||++||||++ ++..|+|+
T Consensus 2 ~i~~~~~~~~~~~~~l~~~g~~~~~l~~~~g~~~~~i~f~~~~~~~n~~~gi~i~~~~pf~vGD~I~i----~~~~G~V~ 77 (206)
T PF00924_consen 2 KIIRIVIIIVGILIILSILGIDVSSLLASLGVLGLAIGFAFQDIISNFISGIIILFERPFKVGDRIEI----GGVEGRVE 77 (206)
T ss_dssp -HHHHHHHHHHHHHHHHCCT--SCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC-SS-TT-EEES----SS-EEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCCEEEE----EEeehHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999 79999999
Q ss_pred EEeceeeEEEEecCCcEEEEeccccccCcEEeccC-CCceEEEEEEEecc-CCHHHHHHHHHHHHHHHHhCCCccccccc
Q 005371 276 HVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQ-KSHWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQRLH 353 (699)
Q Consensus 276 eIgL~sTT~IRt~Dg~~ViIPNs~l~s~~I~N~Sr-~~~~ri~i~l~I~y-td~ekv~~l~~~i~e~L~~~p~v~~~~~~ 353 (699)
+|+|++ |++|++||++++|||+.|.++.|.|||+ +..++..+.+.++| +|+++++++.+.+.+.++++|.+...+ .
T Consensus 78 ~I~l~~-t~l~~~~g~~v~IPNs~l~~~~i~N~s~~~~~~~~~v~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~ 155 (206)
T PF00924_consen 78 EIGLRS-TRLRTWDGEIVIIPNSKLISSPIVNYSRSSPYRRVVVEIPVDYDTDPEKIEELREKIEEALRSNPYIFKEP-E 155 (206)
T ss_dssp EE-SSE-EEEEETTS-EEEEEHHHHHCS-EEETTT-SSEEEEEEEEEE-TTS----HHHHHHHHHHHHHH-TTC-TTS--
T ss_pred hcCcce-eeeecCCCCEEEEEchheeeEEEEEeeccCCceeeeeeeeEecCCCchHHHHHHHHHHHHHhcCchhhcCC-C
Confidence 999999 9999999999999999999999999999 77889999999999 898999999999999999999888765 6
Q ss_pred eEEEEEeeCCCCceEEEEEEEEEecCChhhHHHHHHHHHHHHHHHHHHCCCcc
Q 005371 354 RRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARL 406 (699)
Q Consensus 354 p~V~v~~~~~~d~sv~i~V~~~v~~~~~~~~~~vr~eL~~~Il~~~~e~GIe~ 406 (699)
|.+.+..++. .++.++++||++..++.+++.+|++++.++++.|++|||+|
T Consensus 156 ~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~gI~~ 206 (206)
T PF00924_consen 156 PRVVVDEIGD--SSLEFRIRVYVKNQDPEKYWEIRSEIRKRILEILEEHGIEI 206 (206)
T ss_dssp EEEEEEEE-S--SSEEEEEEEEEEC---CCHHHHHHHHHHHHHHHHHHHT---
T ss_pred CeEEEccccC--CceEEEEEEEEEeCchhhHHHHHHHHHHHHHHHHHHccCCC
Confidence 7899998885 79999999999998889999999999999999999999986
No 7
>COG0668 MscS Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.7e-33 Score=293.36 Aligned_cols=211 Identities=21% Similarity=0.350 Sum_probs=193.5
Q ss_pred hHH-HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhccCCccCCcEEEEeecCC
Q 005371 190 GFQ-FAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGY 268 (699)
Q Consensus 190 ~i~-~i~~ii~iiv~iia~iiiL~~lGv~i~~lLa~lGv~glaIglAaqd~l~Ni~aGi~I~~~rPFrIGD~I~Iki~~~ 268 (699)
... ++.++.++++++++++++|..+|++++++++++|++|+++|||+|++++|+++|+++++++||++||||++ +
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~lla~~G~~glaigla~q~~~~n~~~Gi~il~~~~f~vGD~I~i----~ 157 (316)
T COG0668 82 TLSVFLSNLLRILILVVALLIVLSVLGVQVTSLLAGLGALGLAIGLALQDLLSNLIAGIFLLLERPFKVGDWIEI----G 157 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHhheecCcCcCCEEEE----C
Confidence 344 78999999999999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred -CeeEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEeccCCCceEEEEEEEecc-CCHHHHHHHHHHHHHHHHhCCC
Q 005371 269 -EVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQ 346 (699)
Q Consensus 269 -~~~G~VeeIgL~sTT~IRt~Dg~~ViIPNs~l~s~~I~N~Sr~~~~ri~i~l~I~y-td~ekv~~l~~~i~e~L~~~p~ 346 (699)
++.|+|++|++++ |++|++||++++|||+.+.++.|.||++...+++.+.+.++| +|++++++++.++.+ ..+.
T Consensus 158 ~~~~G~V~~i~~~~-T~ir~~dg~~v~iPNs~i~~~~i~N~s~~~~~~~~~~v~v~~~~~~~~~~~i~~~~~~---~~~~ 233 (316)
T COG0668 158 SGVEGTVEDIGLRS-TTIRTLDGRIVTIPNSKLFTANVVNYSREPGRRVEVKVGVAYDSDLEKALKILKEVLE---ELPE 233 (316)
T ss_pred CCceEEEEEEEEEE-EEEEcCCCCEEEccchhhccCceEeCCCCCcEEEEEEEeeccCCCHHHHHHHHHHHHH---hccc
Confidence 6999999999999 999999999999999999999999999998989999999999 999999996555544 4444
Q ss_pred cc-ccccceEEEEEeeCCCCceEEEEEEEEEecCChhhHHHHHHHHHHHHHHHHHHCCCccCCCcEEEE
Q 005371 347 VE-QQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQ 414 (699)
Q Consensus 347 v~-~~~~~p~V~v~~~~~~d~sv~i~V~~~v~~~~~~~~~~vr~eL~~~Il~~~~e~GIe~a~P~qtv~ 414 (699)
.. .++ .|.+++.++++ +++.+++++|++..+ ++..+++++..+++.++++||+++||++.+.
T Consensus 234 ~~~~~~-~~~v~~~~~~~--~~~~i~v~~~t~~~~---~~~~~~~~~~~i~~~~~~~gi~i~~p~~~~~ 296 (316)
T COG0668 234 VLKIEP-EPVIGVSELGD--SGINIRVRFWTNPED---LWSVQRELNLRIKEALEEAGIEIPYPQQSVL 296 (316)
T ss_pred ccccCC-CcEEEEeeccC--CceEEEEEEEecchh---HHHHHHHHHHHHHHHHHHcCCCCCCCCeeEE
Confidence 44 244 67899999985 799999999999875 6899999999999999999999999999977
No 8
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=99.76 E-value=2.6e-18 Score=197.92 Aligned_cols=218 Identities=17% Similarity=0.194 Sum_probs=190.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhh-hhhhccCCccCCcEEEEeecCC
Q 005371 190 GFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSS-AMIHATRPFVLNEWIQTKIEGY 268 (699)
Q Consensus 190 ~i~~i~~ii~iiv~iia~iiiL~~lGv~i~~lLa~lGv~glaIglAaqd~l~Ni~aG-i~I~~~rPFrIGD~I~Iki~~~ 268 (699)
.+.-+.+++.+++-++++++.+-.+|++...+++..+-.-+++.|.+.+++++++.+ |++++.+||.+||+|.| +
T Consensus 479 aV~kL~~il~~Iv~vv~~~i~lil~~i~~~~~l~~~~sq~v~l~fif~~~~k~~~esiIFlfv~HPyDvGDRv~V----D 554 (714)
T KOG4629|consen 479 AVNKLDRILNFIVAVVLLVIWLILLGINTSKLLLVISSQLVGLAFIFGNIVKELLESIIFLFVMHPYDVGDRVVV----D 554 (714)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccceeeeeeecccceeeeeehhhHHHHHHHHHhheeecCCCCCCCeEEE----e
Confidence 466677777778888888888889999999999888888888999999999999986 55788899999999999 5
Q ss_pred CeeEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEeccCCCceEEEEEEEecc-CCHHHHHHHHHHHHHHHHhCCCc
Q 005371 269 EVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQV 347 (699)
Q Consensus 269 ~~~G~VeeIgL~sTT~IRt~Dg~~ViIPNs~l~s~~I~N~Sr~~~~ri~i~l~I~y-td~ekv~~l~~~i~e~L~~~p~v 347 (699)
|+.-.|++++|++ |.+..+||+.+++||+.+.++.|.|+.|++.....+++.++. ++.+|+.++.+.+.++++++|..
T Consensus 555 g~~~vVeemnLls-TvF~~~dg~kI~~PNS~L~~k~I~N~rRS~~~~~~v~f~i~~~T~~~Ki~~Lk~rI~~ylks~~~~ 633 (714)
T KOG4629|consen 555 GVNLVVEEMNLLS-TVFLRVDGRKIFIPNSVLWTKAISNYRRSPDMGDEVEFLISSSTPFEKIERLKERIAEYLKSSPDD 633 (714)
T ss_pred ceEEEEEEeccce-EEEEEECCeEEEeecHHHHhhhhhhhhcCccccccEEEEecCCCCHHHHHHHHHHHHHHHhcCccc
Confidence 7899999999999 999999999999999999999999999999888899999999 99999999999999999999988
Q ss_pred cccccceEEEEEeeCCCCc-eEEEEEEEEEecCChhhHHHHHHHHHHHHHHHHHHCCCccCCCcEEEE
Q 005371 348 EQQRLHRRVFLDNINPENQ-ALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQ 414 (699)
Q Consensus 348 ~~~~~~p~V~v~~~~~~d~-sv~i~V~~~v~~~~~~~~~~vr~eL~~~Il~~~~e~GIe~a~P~qtv~ 414 (699)
+.+. +.+.+.++.+.+. .+.+.+.++.+.++..+++..|.++..++.+.+++.+|++-++.+++.
T Consensus 634 ~~p~--~~~~i~~~e~~n~v~i~v~~~h~~n~Qd~~~~~~Rr~~~~~~l~~~~~eLdI~y~l~p~~in 699 (714)
T KOG4629|consen 634 YYPD--LMVVIEEIEDLNSVKICVVVQHKINFQDMKERWSRRTEFVSALTKIMRELDIEYTLYPLDIN 699 (714)
T ss_pred cccc--hhhHHHhhhhcCcceEEEEEEeecchhhHHHHHhhHHHHHHHHHHHHHHcCcceeecCcchh
Confidence 8443 4577777776433 566666777778899999999999999999999999999965555544
No 9
>PRK10263 DNA translocase FtsK; Provisional
Probab=88.18 E-value=9.7 Score=48.67 Aligned_cols=14 Identities=14% Similarity=-0.069 Sum_probs=6.1
Q ss_pred eccccccCcEEecc
Q 005371 296 PNHKFTVNVVRNLS 309 (699)
Q Consensus 296 PNs~l~s~~I~N~S 309 (699)
.+...+...+.|-.
T Consensus 245 ~~~~~~~~~~~~~~ 258 (1355)
T PRK10263 245 ARRKRLAEKFINPM 258 (1355)
T ss_pred hhhhhhhhhccccc
Confidence 34444444444443
No 10
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=84.58 E-value=66 Score=35.04 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=27.2
Q ss_pred ceEEEEEEEecc-CCHHHHHHHHHHHHHHHHhCCC
Q 005371 313 HWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQ 346 (699)
Q Consensus 313 ~~ri~i~l~I~y-td~ekv~~l~~~i~e~L~~~p~ 346 (699)
...+.+++.++. .+.++..++.+++.+.+++...
T Consensus 244 ~~~id~~i~v~~~ls~~eah~I~~~ie~~i~~~~~ 278 (304)
T COG0053 244 RIFIDVHIEVDPDLSLEEAHEIADEVEKRIKKEFP 278 (304)
T ss_pred eEEEEEEEEECCCCChHHHHHHHHHHHHHHHHhcC
Confidence 344678888888 8999999999999998877543
No 11
>PRK02509 hypothetical protein; Provisional
Probab=81.47 E-value=1.1e+02 Score=38.45 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=10.1
Q ss_pred CCCcCcccchhHHHHhhc
Q 005371 45 INPIPYRSNRIRSYNALQ 62 (699)
Q Consensus 45 ~~pv~~r~~~p~l~~~l~ 62 (699)
..|+|.....+.+|+.+.
T Consensus 144 ~~~~~~~~~~~~~~~~~~ 161 (973)
T PRK02509 144 SPPLPSPFRLEWLWNLLT 161 (973)
T ss_pred CCCCCCcccchHHHHHHH
Confidence 445566666666655443
No 12
>PF03699 UPF0182: Uncharacterised protein family (UPF0182); InterPro: IPR005372 This family contains uncharacterised integral membrane proteins.; GO: 0016021 integral to membrane
Probab=79.33 E-value=1.4e+02 Score=36.99 Aligned_cols=24 Identities=8% Similarity=0.144 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCc
Q 005371 194 AGKAVYSAVWVASASLFMELLGFS 217 (699)
Q Consensus 194 i~~ii~iiv~iia~iiiL~~lGv~ 217 (699)
...++.++..++++++++..+--+
T Consensus 247 ~~~il~~i~~~~A~~~~~~~~~~~ 270 (774)
T PF03699_consen 247 AYTILAVIALLCAVLFFINIFRRN 270 (774)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445555666666666666665333
No 13
>PRK11465 putative mechanosensitive channel protein; Provisional
Probab=77.30 E-value=1.8e+02 Score=35.67 Aligned_cols=26 Identities=15% Similarity=0.063 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhC
Q 005371 190 GFQFAGKAVYSAVWVASASLFMELLG 215 (699)
Q Consensus 190 ~i~~i~~ii~iiv~iia~iiiL~~lG 215 (699)
+.+.+.++++.++++++++.++..+|
T Consensus 422 ~~~~~l~~lr~l~~~~~vl~ll~a~~ 447 (741)
T PRK11465 422 WLSAALKTARILTVCVAVMLLLNAWG 447 (741)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666665666555555555555
No 14
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=76.02 E-value=1e+02 Score=34.09 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHH
Q 005371 190 GFQFAGKAVYSAVWVASASLFMELLGF--STQKWLTAGGLGTVLLT 233 (699)
Q Consensus 190 ~i~~i~~ii~iiv~iia~iiiL~~lGv--~i~~lLa~lGv~glaIg 233 (699)
.+..+++.++.+++++..++++..+.. +....--++|-++++++
T Consensus 121 ~~~~~r~~l~~~~~~~~pl~~~~~~~~~~~~~~~~d~LGrl~~ii~ 166 (340)
T PF12794_consen 121 RVQRLRRQLRWLIWVLVPLLFISIFAENLPDGLARDVLGRLAFIIL 166 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhHHHHHHHHH
Confidence 456677888888887777777665543 33333334454444443
No 15
>PRK12438 hypothetical protein; Provisional
Probab=75.42 E-value=1.2e+02 Score=38.41 Aligned_cols=12 Identities=17% Similarity=0.761 Sum_probs=7.8
Q ss_pred cCCccCC-cEEEE
Q 005371 252 TRPFVLN-EWIQT 263 (699)
Q Consensus 252 ~rPFrIG-D~I~I 263 (699)
.+.|.+. |.|+.
T Consensus 333 R~AYgL~~d~v~~ 345 (991)
T PRK12438 333 RQAYGIGGDWVQY 345 (991)
T ss_pred HHHhCCCccceEE
Confidence 3467774 67765
No 16
>TIGR01654 bact_immun_7tm bacteriocin-associated integral membrane (putative immunity) protein. This model represents a family of integral membrane proteins, most of which are about 650 residues in size and predicted to span the membrane seven times. Nearly half of the members of this family are found in association with a member of the lactococcin 972 family of bacteriocins (TIGR01653). Others may be associated with uncharacterized proteins that may also act as bacteriocins. Although this protein is suggested to be an immunity protein, and the bacteriocin is suggested to be exported by a Sec-dependent process, the role of this protein is unclear.
Probab=74.95 E-value=1.5e+02 Score=35.85 Aligned_cols=11 Identities=45% Similarity=0.513 Sum_probs=5.8
Q ss_pred HHHHhCCCccc
Q 005371 339 KVLAKNPQVEQ 349 (699)
Q Consensus 339 e~L~~~p~v~~ 349 (699)
.+|+.+|-...
T Consensus 403 NYL~~~~i~~~ 413 (679)
T TIGR01654 403 NYLSKFPIVSQ 413 (679)
T ss_pred HHHHhCCCcCC
Confidence 45555665443
No 17
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=72.23 E-value=13 Score=34.70 Aligned_cols=37 Identities=5% Similarity=-0.097 Sum_probs=29.0
Q ss_pred ccCCcEEEEeecCCCeeEEEEEEeceeeEEEEecCCcEEEE
Q 005371 255 FVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHI 295 (699)
Q Consensus 255 FrIGD~I~Iki~~~~~~G~VeeIgL~sTT~IRt~Dg~~ViI 295 (699)
+++||.|.. .||..|+|.+|+=-+ ..++..+|..+.+
T Consensus 39 Lk~GD~VvT---~gGi~G~V~~I~d~~-v~leia~gv~i~~ 75 (109)
T PRK05886 39 LQPGDRVHT---TSGLQATIVGITDDT-VDLEIAPGVVTTW 75 (109)
T ss_pred cCCCCEEEE---CCCeEEEEEEEeCCE-EEEEECCCeEEEE
Confidence 699999998 489999999998765 7777666655543
No 18
>PRK11281 hypothetical protein; Provisional
Probab=71.00 E-value=75 Score=40.68 Aligned_cols=23 Identities=9% Similarity=0.079 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005371 191 FQFAGKAVYSAVWVASASLFMEL 213 (699)
Q Consensus 191 i~~i~~ii~iiv~iia~iiiL~~ 213 (699)
+..+++-++.++|++..++++..
T Consensus 616 ~~~~~~~~~~~~~~~~pl~~~~~ 638 (1113)
T PRK11281 616 VSHFRRQIVRLSLALLPLLFWSV 638 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544444433
No 19
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=69.63 E-value=73 Score=35.10 Aligned_cols=19 Identities=5% Similarity=0.071 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005371 152 FVRSLSTVLAFAYCLSSLI 170 (699)
Q Consensus 152 ~l~siliIl~~~~ll~~li 170 (699)
.+-++++.++..|+...+.
T Consensus 45 ligai~~~li~~~~~~~~~ 63 (356)
T COG4956 45 LIGAIIFFLISFWFGKYVL 63 (356)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555544444
No 20
>PRK00068 hypothetical protein; Validated
Probab=68.29 E-value=1.4e+02 Score=37.77 Aligned_cols=16 Identities=19% Similarity=0.123 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHCCCcc
Q 005371 391 ILLDLLRVISHHRARL 406 (699)
Q Consensus 391 L~~~Il~~~~e~GIe~ 406 (699)
++.+++-+++-....|
T Consensus 536 ~~~RllfA~~f~d~~i 551 (970)
T PRK00068 536 FLNRLLFAANYAERNF 551 (970)
T ss_pred HHHHHHHHHHcCCCcE
Confidence 4455555555555543
No 21
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=68.13 E-value=14 Score=34.19 Aligned_cols=41 Identities=17% Similarity=0.154 Sum_probs=32.2
Q ss_pred CccCCcEEEEeecCCCeeEEEEEEeceeeEEEEecCCcEEEEecc
Q 005371 254 PFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNH 298 (699)
Q Consensus 254 PFrIGD~I~Iki~~~~~~G~VeeIgL~sTT~IRt~Dg~~ViIPNs 298 (699)
-.++||+|.. .+|..|+|.+|+=-. ..++..+|..+.+=-+
T Consensus 52 ~Lk~Gd~VvT---~gGi~G~Vv~i~~~~-v~lei~~g~~i~~~r~ 92 (106)
T PRK05585 52 SLAKGDEVVT---NGGIIGKVTKVSEDF-VIIELNDDTEIKIQKS 92 (106)
T ss_pred hcCCCCEEEE---CCCeEEEEEEEeCCE-EEEEECCCeEEEEEhH
Confidence 3689999987 489999999999865 8888888866655433
No 22
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=67.11 E-value=17 Score=32.25 Aligned_cols=38 Identities=13% Similarity=0.139 Sum_probs=30.2
Q ss_pred CccCCcEEEEeecCCCeeEEEEEEeceeeEEEEecCCcEEEE
Q 005371 254 PFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHI 295 (699)
Q Consensus 254 PFrIGD~I~Iki~~~~~~G~VeeIgL~sTT~IRt~Dg~~ViI 295 (699)
-+++||+|.. .+|..|+|.+|+=-+ ..++..+|..+.+
T Consensus 37 ~L~~Gd~VvT---~gGi~G~V~~i~d~~-v~vei~~g~~i~~ 74 (84)
T TIGR00739 37 SLKKGDKVLT---IGGIIGTVTKIAENT-IVIELNDNTEITF 74 (84)
T ss_pred hCCCCCEEEE---CCCeEEEEEEEeCCE-EEEEECCCeEEEE
Confidence 3689999998 489999999999776 7777777755544
No 23
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=66.83 E-value=1.5e+02 Score=38.12 Aligned_cols=17 Identities=18% Similarity=0.542 Sum_probs=8.9
Q ss_pred ccccchhhHHHHHHHHH
Q 005371 101 NSWKKSKTHHVMTSYIQ 117 (699)
Q Consensus 101 ~~~~~~~~~~il~sl~~ 117 (699)
.+|.+.....+.+.+.+
T Consensus 588 F~w~~~~v~~~~~~~~~ 604 (1109)
T PRK10929 588 FGWPRERVARAMRYYLL 604 (1109)
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 36776555555444433
No 24
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=66.05 E-value=2.9e+02 Score=33.90 Aligned_cols=42 Identities=17% Similarity=-0.002 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 005371 204 VASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLS 245 (699)
Q Consensus 204 iia~iiiL~~lGv~i~~lLa~lGv~glaIglAaqd~l~Ni~a 245 (699)
++..+.+|.......+.+..+..++-++++++++..+.+..-
T Consensus 281 ~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~ 322 (709)
T COG2274 281 ALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTR 322 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444555555555556666677778888888777653
No 25
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=64.86 E-value=3.1e+02 Score=33.75 Aligned_cols=23 Identities=9% Similarity=-0.129 Sum_probs=10.8
Q ss_pred HhCCchHHHHHHHHHHHHHHHHH
Q 005371 213 LLGFSTQKWLTAGGLGTVLLTLA 235 (699)
Q Consensus 213 ~lGv~i~~lLa~lGv~glaIglA 235 (699)
..+++.-.-+..+-..|++++++
T Consensus 315 ~s~i~~i~~~Gi~~siGi~la~l 337 (727)
T COG1033 315 TSSIPAIKEFGILLSIGIILAFL 337 (727)
T ss_pred HcccHHHHHHHHHHHHHHHHHHH
Confidence 33555444444444445555443
No 26
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=64.79 E-value=2.3e+02 Score=31.36 Aligned_cols=29 Identities=14% Similarity=0.182 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhCCchHH
Q 005371 192 QFAGKAVYSAVWVASA-SLFMELLGFSTQK 220 (699)
Q Consensus 192 ~~i~~ii~iiv~iia~-iiiL~~lGv~i~~ 220 (699)
..+++++..++.++-+ ++++..+|+--++
T Consensus 194 ~~~~~l~~~~li~~Pl~li~la~~GY~yTA 223 (340)
T PF12794_consen 194 HRLRYLWWPLLILAPLALIVLALLGYYYTA 223 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4566666655554443 3445566775443
No 27
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=63.66 E-value=1.7e+02 Score=36.04 Aligned_cols=58 Identities=14% Similarity=0.063 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCc------------------hHHHHHHHHH--------HHHHHHHHhhHHHHHHH
Q 005371 191 FQFAGKAVYSAVWVASASLFMELLGFS------------------TQKWLTAGGL--------GTVLLTLAGREIFTNFL 244 (699)
Q Consensus 191 i~~i~~ii~iiv~iia~iiiL~~lGv~------------------i~~lLa~lGv--------~glaIglAaqd~l~Ni~ 244 (699)
..++.++..+++.+..++.+|..+|.+ ++++++-+|+ ++++.||.+|+.+-.-+
T Consensus 509 ~~Fl~~Ag~iI~~~~iviw~l~~~~~~g~~~~~~~~S~l~~ig~~i~Pi~~plG~~~~nW~~~vali~G~~AKE~vv~tl 588 (772)
T PRK09554 509 KGFVLRAGKVIIIVSIFIGALNSFSLSGKIVDNINDSALASVSRVITPVLKPIGVHEDNWQATVGLFTGAMAKEVVVGTL 588 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccccccchhhhHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 557888888888888888888888632 1233333444 46667899999887777
Q ss_pred hhhh
Q 005371 245 SSAM 248 (699)
Q Consensus 245 aGi~ 248 (699)
+.++
T Consensus 589 ~~ly 592 (772)
T PRK09554 589 NTLY 592 (772)
T ss_pred HHHH
Confidence 6665
No 28
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=63.51 E-value=24 Score=32.34 Aligned_cols=41 Identities=17% Similarity=0.098 Sum_probs=31.6
Q ss_pred ccCCcEEEEeecCCCeeEEEEEEeceeeEEEEecCCcEEEEeccc
Q 005371 255 FVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHK 299 (699)
Q Consensus 255 FrIGD~I~Iki~~~~~~G~VeeIgL~sTT~IRt~Dg~~ViIPNs~ 299 (699)
.+.||.|.. .||..|+|.+|+=.. ..|...+|..+.+--+.
T Consensus 44 L~kGD~VvT---~gGi~G~V~~v~d~~-v~I~l~~~~~i~~~k~a 84 (97)
T COG1862 44 LKKGDEVVT---IGGIVGTVTKVGDDT-VEIELGDGTKIKFEKEA 84 (97)
T ss_pred ccCCCEEEE---cCCeEEEEEEEecCc-EEEEECCCeEEEEEHHH
Confidence 589999987 488999999999876 66666677666654433
No 29
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=62.45 E-value=3.6e+02 Score=32.86 Aligned_cols=10 Identities=20% Similarity=0.328 Sum_probs=5.3
Q ss_pred ceEEEEEeeC
Q 005371 353 HRRVFLDNIN 362 (699)
Q Consensus 353 ~p~V~v~~~~ 362 (699)
.|..|+++.-
T Consensus 529 rP~~FiENQ~ 538 (700)
T COG1480 529 RPLFFIENQM 538 (700)
T ss_pred CCcccccccc
Confidence 3456666543
No 30
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=60.31 E-value=1.7e+02 Score=31.55 Aligned_cols=15 Identities=0% Similarity=0.193 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHhCCC
Q 005371 332 SIVADMRKVLAKNPQ 346 (699)
Q Consensus 332 ~l~~~i~e~L~~~p~ 346 (699)
++.+.+.+.++++.-
T Consensus 252 ~~~~~I~~~f~~~gI 266 (286)
T PRK10334 252 DVLERIKREFDAAGI 266 (286)
T ss_pred HHHHHHHHHHHHCCC
Confidence 344456666655443
No 31
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=56.28 E-value=4.9e+02 Score=32.47 Aligned_cols=22 Identities=9% Similarity=0.132 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC
Q 005371 194 AGKAVYSAVWVASASLFMELLG 215 (699)
Q Consensus 194 i~~ii~iiv~iia~iiiL~~lG 215 (699)
..++++.+++++++..++..+|
T Consensus 511 ~~~~~rl~~~~~~i~l~l~~wg 532 (835)
T COG3264 511 LLRLIRLLLLLIAIPLVLYVWG 532 (835)
T ss_pred hhHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777777777777776
No 32
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=55.72 E-value=3.5e+02 Score=30.56 Aligned_cols=16 Identities=13% Similarity=0.258 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHCCCc
Q 005371 390 AILLDLLRVISHHRAR 405 (699)
Q Consensus 390 eL~~~Il~~~~e~GIe 405 (699)
.+-++|.+.-++|||.
T Consensus 296 ~~AlkIreiA~e~~Ip 311 (363)
T COG1377 296 LVALKIREIAKEHGIP 311 (363)
T ss_pred HHHHHHHHHHHHcCCc
Confidence 3445566666666665
No 33
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=55.37 E-value=1.4e+02 Score=27.88 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCchHHH
Q 005371 194 AGKAVYSAVWVASASLFMELLGFSTQKW 221 (699)
Q Consensus 194 i~~ii~iiv~iia~iiiL~~lGv~i~~l 221 (699)
.+++..+++++++.+..+..+|+-++++
T Consensus 72 ~~~~~~~~~~~~~y~~~~~~lGf~~at~ 99 (141)
T PF07331_consen 72 WKRVLLVLGLLVLYVLLLEYLGFIIATF 99 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4466666666666666677777754443
No 34
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=55.12 E-value=3.7e+02 Score=30.62 Aligned_cols=11 Identities=9% Similarity=0.452 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 005371 193 FAGKAVYSAVW 203 (699)
Q Consensus 193 ~i~~ii~iiv~ 203 (699)
+..++..++++
T Consensus 119 l~~n~~~~~~~ 129 (471)
T PF04791_consen 119 LKENLIYYLIF 129 (471)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 35
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=52.59 E-value=5.3e+02 Score=31.70 Aligned_cols=41 Identities=10% Similarity=0.056 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q 005371 192 QFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLT 233 (699)
Q Consensus 192 ~~i~~ii~iiv~iia~iiiL~~lGv~i~~lLa~lGv~glaIg 233 (699)
.++..+..+++..+++..++.. .++++.++|.-.+.+-..+
T Consensus 384 ~~l~~l~~v~iL~~G~~lVl~~-~lTlG~LiAf~~l~~~f~~ 424 (709)
T COG2274 384 SLLQQLSSVLILWFGAILVLEG-ELTLGQLVAFNMLAGYFIS 424 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHh
Confidence 3444444444444554444433 5556667666665555544
No 36
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=51.75 E-value=5.3e+02 Score=31.53 Aligned_cols=30 Identities=10% Similarity=-0.001 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005371 150 LNFVRSLSTVLAFAYCLSSLIQQAQKFFME 179 (699)
Q Consensus 150 l~~l~siliIl~~~~ll~~li~~i~~~l~~ 179 (699)
+.|++..+.-.+.+|+..++-.+..-+...
T Consensus 74 iaFliGa~~S~laGyiGM~vAt~aN~Rta~ 103 (682)
T PF03030_consen 74 IAFLIGALCSALAGYIGMRVATRANVRTAN 103 (682)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHhhHH
Confidence 355665555566778777776554444433
No 37
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=51.74 E-value=4.9 Score=43.28 Aligned_cols=16 Identities=25% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHhCCchHHHHHHH
Q 005371 210 FMELLGFSTQKWLTAG 225 (699)
Q Consensus 210 iL~~lGv~i~~lLa~l 225 (699)
.|..+|.+...+++..
T Consensus 128 lLr~~GAs~WtiLaFc 143 (381)
T PF05297_consen 128 LLRELGASFWTILAFC 143 (381)
T ss_dssp ----------------
T ss_pred HHHHhhhHHHHHHHHH
Confidence 3445566666655543
No 38
>PF14348 DUF4400: Domain of unknown function (DUF4400)
Probab=51.29 E-value=1.8e+02 Score=29.42 Aligned_cols=75 Identities=20% Similarity=0.117 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHhhcCCcccchhhHHHHHHHHHHHHHHHHHH-HHHHHhCCchHHHHHHHHHHHHHHHHHhhHHHHHH
Q 005371 165 CLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASAS-LFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNF 243 (699)
Q Consensus 165 ll~~li~~i~~~l~~~~~~~~~r~~~i~~i~~ii~iiv~iia~i-iiL~~lGv~i~~lLa~lGv~glaIglAaqd~l~Ni 243 (699)
++.-+++.+.++-.++......... ..+...+.+.+++++. ++.-.+-+++.+.+..+ .+.+.+|++..-+.+||
T Consensus 122 ~~~~~vDGl~~R~iRr~~~g~eSp~---~~h~a~~~~~~~~~~~~~lyL~lP~~i~P~~~~l-~~a~llg~av~~t~s~F 197 (198)
T PF14348_consen 122 ALAALVDGLVRRDIRRFGFGRESPF---VYHHAKRSVIPLLILPWVLYLSLPFSIPPNLVPL-PAALLLGLAVWITASNF 197 (198)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHcccccChHHHHH-HHHHHHHHHHHHHHHhc
Confidence 3444445444444444333222222 3445555555555555 22234455554444443 44555566655555553
No 39
>TIGR01654 bact_immun_7tm bacteriocin-associated integral membrane (putative immunity) protein. This model represents a family of integral membrane proteins, most of which are about 650 residues in size and predicted to span the membrane seven times. Nearly half of the members of this family are found in association with a member of the lactococcin 972 family of bacteriocins (TIGR01653). Others may be associated with uncharacterized proteins that may also act as bacteriocins. Although this protein is suggested to be an immunity protein, and the bacteriocin is suggested to be exported by a Sec-dependent process, the role of this protein is unclear.
Probab=48.17 E-value=5.3e+02 Score=31.27 Aligned_cols=13 Identities=15% Similarity=0.243 Sum_probs=5.1
Q ss_pred HHHHHHHHHHhhh
Q 005371 86 PLMRQSRNLLLRK 98 (699)
Q Consensus 86 ~llr~i~r~l~~r 98 (699)
..++..++...+|
T Consensus 187 ~~~~~~K~~gI~r 199 (679)
T TIGR01654 187 YLMINMKRVAIYR 199 (679)
T ss_pred HHHHHHHHHHHHH
Confidence 3333344444443
No 40
>PF11449 DUF2899: Protein of unknown function (DUF2899); InterPro: IPR021552 This is a bacterial family of uncharacterised proteins.
Probab=47.78 E-value=2.2e+02 Score=31.31 Aligned_cols=43 Identities=23% Similarity=0.321 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH----HhCCchHHHHHHHHHHHHHH
Q 005371 190 GFQFAGKAVYSAVWVASASLFME----LLGFSTQKWLTAGGLGTVLL 232 (699)
Q Consensus 190 ~i~~i~~ii~iiv~iia~iiiL~----~lGv~i~~lLa~lGv~glaI 232 (699)
..+.+....++++|++++.+++. .+|.++..++...++.+..+
T Consensus 178 ~~~a~~hT~~I~~~v~~~~l~~~~~i~~~G~dl~~~l~~~~~~~pli 224 (298)
T PF11449_consen 178 LQKALQHTLFIFVWVFVAFLALELVIEFIGEDLAALLSGNGILQPLI 224 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHhCchHHHHH
Confidence 56677788899999888887775 45888888877666654443
No 41
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=46.66 E-value=2.2e+02 Score=37.19 Aligned_cols=24 Identities=17% Similarity=0.030 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCc
Q 005371 194 AGKAVYSAVWVASASLFMELLGFS 217 (699)
Q Consensus 194 i~~ii~iiv~iia~iiiL~~lGv~ 217 (699)
++.++...+..+.+++.|..+|..
T Consensus 1007 fs~ILdTnLTTLIA~lPLf~fGtG 1030 (1403)
T PRK12911 1007 FSAIFDSNLTTILASALLLMLDTG 1030 (1403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 444444445555555555556543
No 42
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=45.39 E-value=54 Score=30.89 Aligned_cols=38 Identities=16% Similarity=0.044 Sum_probs=26.6
Q ss_pred ccCCcEEEEeecCCCeeEEEEEEece-eeEEEEecCCcEEEEe
Q 005371 255 FVLNEWIQTKIEGYEVSGTVEHVGWW-SPTIVRGEDREAVHIP 296 (699)
Q Consensus 255 FrIGD~I~Iki~~~~~~G~VeeIgL~-sTT~IRt~Dg~~ViIP 296 (699)
+++||+|.. .||..|+|.+|+-- .+..+.. +|..+.+=
T Consensus 37 Lk~GD~VvT---~GGi~G~V~~I~~~~~~v~le~-~gv~i~v~ 75 (113)
T PRK06531 37 IQKGDEVVT---IGGLYGTVDEVDTEAKTIVLDV-DGVYLTFE 75 (113)
T ss_pred cCCCCEEEE---CCCcEEEEEEEecCCCEEEEEE-CCEEEEEE
Confidence 689999987 48999999999852 1155554 56554443
No 43
>COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]
Probab=45.24 E-value=6.3e+02 Score=30.66 Aligned_cols=9 Identities=22% Similarity=0.231 Sum_probs=4.6
Q ss_pred CCCcCcccc
Q 005371 45 INPIPYRSN 53 (699)
Q Consensus 45 ~~pv~~r~~ 53 (699)
+.|+-.|.+
T Consensus 329 ~~Pt~l~n~ 337 (660)
T COG1269 329 EVPTKLRNP 337 (660)
T ss_pred CCCEeecCC
Confidence 555544444
No 44
>PRK10263 DNA translocase FtsK; Provisional
Probab=44.68 E-value=8e+02 Score=32.40 Aligned_cols=11 Identities=18% Similarity=0.157 Sum_probs=5.2
Q ss_pred HhCCchHHHHH
Q 005371 213 LLGFSTQKWLT 223 (699)
Q Consensus 213 ~lGv~i~~lLa 223 (699)
++|++...++.
T Consensus 178 lTglSwlsIle 188 (1355)
T PRK10263 178 FTGWSWVTIAE 188 (1355)
T ss_pred HHhhHHHHHHH
Confidence 45665444433
No 45
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=42.98 E-value=3.6e+02 Score=29.98 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005371 70 LVPGIAIIVFATWGLGPLMRQS 91 (699)
Q Consensus 70 lL~al~illl~~~~l~~llr~i 91 (699)
++-++..+++..|+..++..++
T Consensus 45 ligai~~~li~~~~~~~~~~~~ 66 (356)
T COG4956 45 LIGAIIFFLISFWFGKYVLNWL 66 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444544555555444444443
No 46
>PRK12438 hypothetical protein; Provisional
Probab=42.28 E-value=8.5e+02 Score=31.17 Aligned_cols=12 Identities=8% Similarity=0.052 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHH
Q 005371 191 FQFAGKAVYSAV 202 (699)
Q Consensus 191 i~~i~~ii~iiv 202 (699)
+++++-++.+++
T Consensus 165 LPf~~~l~~~l~ 176 (991)
T PRK12438 165 LPFYRSVLNWLF 176 (991)
T ss_pred cHHHHHHHHHHH
Confidence 555555555443
No 47
>PF09953 DUF2187: Uncharacterized protein conserved in bacteria (DUF2187); InterPro: IPR018690 This family consists of various hypothetical bacterial proteins with known function. It includes the uncharacterised YkvS protein from Bacillus subtilis.
Probab=41.92 E-value=43 Score=27.93 Aligned_cols=27 Identities=33% Similarity=0.230 Sum_probs=22.0
Q ss_pred ccCCcEEEEeecCCCeeEEEEEEeceeeEEE
Q 005371 255 FVLNEWIQTKIEGYEVSGTVEHVGWWSPTIV 285 (699)
Q Consensus 255 FrIGD~I~Iki~~~~~~G~VeeIgL~sTT~I 285 (699)
-.+||+|+++ .+..|+|+.+.=.| +.+
T Consensus 4 a~vGdiIefk---~g~~G~V~kv~eNS-VIV 30 (57)
T PF09953_consen 4 AKVGDIIEFK---DGFTGIVEKVYENS-VIV 30 (57)
T ss_pred cccCcEEEEc---CCcEEEEEEEecCc-EEE
Confidence 4799999985 57999999998776 555
No 48
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=41.39 E-value=5.6e+02 Score=29.19 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCch
Q 005371 109 HHVMTSYIQPLMLWTGAILICRALDPVVLPTE 140 (699)
Q Consensus 109 ~~il~sl~~Pl~l~l~~i~i~~al~~l~lp~~ 140 (699)
..+..++.-|+.++++++++...+..+++|..
T Consensus 157 ~Ki~~Al~YP~vll~v~~~v~~~Ll~~VvP~f 188 (397)
T COG1459 157 KKIKSALIYPLVLLVVALVVVLFLLIFVVPQF 188 (397)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhccH
Confidence 36777888899888888888877777777753
No 49
>PRK10845 colicin V production protein; Provisional
Probab=41.28 E-value=3.6e+02 Score=26.59 Aligned_cols=58 Identities=10% Similarity=0.169 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005371 155 SLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMEL 213 (699)
Q Consensus 155 siliIl~~~~ll~~li~~i~~~l~~~~~~~~~r~~~i~~i~~ii~iiv~iia~iiiL~~ 213 (699)
+.++++++.+++.+++..+.+.+.+...- ..-++.+..+-.+++..+++..++.++..
T Consensus 65 af~~iFi~v~~~~~i~~~~l~~l~~~~~L-g~~dr~lG~ifG~~rg~liv~v~l~~l~~ 122 (162)
T PRK10845 65 AIAVLFIATLIVGAIVNYVIGQLVEKTGL-SGTDRVLGVCFGALRGVLIVAAILFFLDT 122 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555666666666555555443222 12233444555555555555555555544
No 50
>PRK03557 zinc transporter ZitB; Provisional
Probab=41.25 E-value=5e+02 Score=28.18 Aligned_cols=13 Identities=8% Similarity=0.350 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHhC
Q 005371 332 SIVADMRKVLAKN 344 (699)
Q Consensus 332 ~l~~~i~e~L~~~ 344 (699)
++.+++++.+++.
T Consensus 267 ~i~~~i~~~l~~~ 279 (312)
T PRK03557 267 ALLDRIQDYLMHH 279 (312)
T ss_pred HHHHHHHHHHHHh
Confidence 3444566666543
No 51
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=40.45 E-value=43 Score=26.82 Aligned_cols=35 Identities=14% Similarity=0.335 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 005371 147 QRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTD 182 (699)
Q Consensus 147 ~~ll~~l~siliIl~~~~ll~~li~~i~~~l~~~~~ 182 (699)
.++++++.+++ +++++|++.+++..+.+.+.++.+
T Consensus 13 ~~lP~iv~Ail-Il~vG~~va~~v~~~~~~~l~~~~ 47 (53)
T PF05552_consen 13 AYLPNIVGAIL-ILIVGWWVAKFVRKLVRRLLEKRG 47 (53)
T ss_dssp GGHCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44556555555 566788899999887777776644
No 52
>PF06442 DHFR_2: R67 dihydrofolate reductase; InterPro: IPR009159 Dihydrofolate reductase (DHFR) (1.5.1.3 from EC) catalyses the NADPH-dependent reduction of dihydrofolate to tetrahydrofolate, an essential step in de novo synthesis both of glycine and of purines and deoxythymidine phosphate (the precursors of DNA synthesis) [], and important also in the conversion of deoxyuridine monophosphate to deoxythymidine monophosphate. Although DHFR is found ubiquitously in prokaryotes and eukaryotes, and is found in all dividing cells, maintaining levels of fully reduced folate coenzymes, the catabolic steps are still not well understood []. Bacterial species possesses distinct DHFR enzymes (based on their pattern of binding diaminoheterocyclic molecules), but mammalian DHFRs are highly similar []. The active site is situated in the N-terminal half of the sequence, which includes a conserved Pro-Trp dipeptide; the tryptophan has been shown [] to be involved in the binding of substrate by the enzyme. Its central role in DNA precursor synthesis, coupled with its inhibition by antagonists such as trimethoprim and methotrexate, which are used as anti-bacterial or anti-cancer agents, has made DHFR a target of anticancer chemotherapy. However, resistance has developed against some drugs, as a result of changes in DHFR itself []. This entry represents a plasmid-encoded DHFR which shows a high level of resistance to the antibiotic trimethoprim. It is a homotetramer with an unusual pore, which contains the active site, passing through the middle of the molecule []. Its structure is unrelated to that of chromosomal DHFRs.; GO: 0004146 dihydrofolate reductase activity, 0042493 response to drug, 0055114 oxidation-reduction process; PDB: 1VIF_A 3SFM_A 2P4T_A 2GQV_A 2RK2_A 2RH2_A 2RK1_A 1VIE_A.
Probab=40.41 E-value=37 Score=28.94 Aligned_cols=42 Identities=21% Similarity=0.483 Sum_probs=17.2
Q ss_pred HHHHHhhhh-hhccCCccCCcEEEEeecCCCeeEEEEEEeceeeEEE
Q 005371 240 FTNFLSSAM-IHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIV 285 (699)
Q Consensus 240 l~Ni~aGi~-I~~~rPFrIGD~I~Iki~~~~~~G~VeeIgL~sTT~I 285 (699)
+.|.++|-+ +-....|..||+|+- ..+....|.| +||.+ |.+
T Consensus 8 v~~~vag~fa~ps~atf~~gdrvrk-ksgaawqg~v--vgwy~-t~l 50 (78)
T PF06442_consen 8 VSNPVAGQFAFPSNATFGMGDRVRK-KSGAAWQGQV--VGWYC-TKL 50 (78)
T ss_dssp -------------S-SS-TT-EEEE-SSSS--EEEE--EEEE---SS
T ss_pred cccccccceecccccccccchhhhh-cccccccceE--eEEEe-ccc
Confidence 455666644 456779999999995 4555566777 57887 665
No 53
>PRK11462 putative transporter; Provisional
Probab=40.17 E-value=5.7e+02 Score=28.90 Aligned_cols=19 Identities=21% Similarity=0.471 Sum_probs=11.2
Q ss_pred HHHhhhccccccchhhHHH
Q 005371 93 NLLLRKSDNSWKKSKTHHV 111 (699)
Q Consensus 93 r~l~~rt~~~~~~~~~~~i 111 (699)
..+..|++.+|.+.+...+
T Consensus 66 G~~~D~t~~r~Gr~rp~il 84 (460)
T PRK11462 66 GLLADRTRSRWGKFRPWVL 84 (460)
T ss_pred eehhccCCCCCCCcchhHh
Confidence 3455577778877544443
No 54
>PF14545 DBB: Dof, BCAP, and BANK (DBB) motif,
Probab=39.63 E-value=95 Score=30.44 Aligned_cols=83 Identities=10% Similarity=0.089 Sum_probs=47.3
Q ss_pred hhhhccCCccCCcEEEEeecCCCeeEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEeccCCCceEEEEEEEecc-C
Q 005371 247 AMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISH-L 325 (699)
Q Consensus 247 i~I~~~rPFrIGD~I~Iki~~~~~~G~VeeIgL~sTT~IRt~Dg~~ViIPNs~l~s~~I~N~Sr~~~~ri~i~l~I~y-t 325 (699)
++|++..++.-||+++|.+...+..=.+....|+...++ .+.+|+--+.-....|.+-...-.+.-.-.|.| +
T Consensus 15 vfIiL~~~l~~~~~~eVef~~~n~~~~~~~~~~~N~yt~------~~~aPd~~~~pag~V~v~v~~~g~~~~~~~ikyys 88 (142)
T PF14545_consen 15 VFIILRDPLDEEDTVEVEFESNNKPIRRVPAKWENPYTL------QFKAPDFCLEPAGSVNVRVYCDGVSLGTRQIKYYS 88 (142)
T ss_pred EEEEEeCCCCCCCeEEEEEEeCCCeeEeccceEECCEEE------EEECchhcCCCCceEEEEEEECCEEEEEEeEEEEe
Confidence 678999999999999997654442222334444321111 344566544444444444333333344556667 8
Q ss_pred CHHHHHHHHH
Q 005371 326 DVHKINSIVA 335 (699)
Q Consensus 326 d~ekv~~l~~ 335 (699)
+.+++.++++
T Consensus 89 ~~~el~~lL~ 98 (142)
T PF14545_consen 89 RMRELEQLLR 98 (142)
T ss_pred cHHHHHHHHH
Confidence 8888777543
No 55
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=38.38 E-value=8.2e+02 Score=29.84 Aligned_cols=58 Identities=12% Similarity=0.139 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC------C----------chHHHHHHHHH------HHHHHHHHhhHHHHHHHhhhh
Q 005371 191 FQFAGKAVYSAVWVASASLFMELLG------F----------STQKWLTAGGL------GTVLLTLAGREIFTNFLSSAM 248 (699)
Q Consensus 191 i~~i~~ii~iiv~iia~iiiL~~lG------v----------~i~~lLa~lGv------~glaIglAaqd~l~Ni~aGi~ 248 (699)
-.+++++-.+++....++.+|+.+| + -...++..+|. .+++.||++|+.+-.-++-++
T Consensus 498 k~Fl~kAgtiI~~~svlIW~Ls~~pp~g~~~~~~S~l~~ig~~l~Plf~plG~~~Wqa~v~Li~G~~AKEvvv~tl~~ly 577 (653)
T COG0370 498 KEFLKKAGTIILAGSVLIWFLSSFPPGGVDNIKDSILAVIGKALEPLFSPLGFGDWQATVALIFGFIAKEVVVGTLGVLY 577 (653)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhCCCcccCchhhhHHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888888888888888886 1 12345555665 477778999988766655443
No 56
>PF15420 Abhydrolase_9_N: Alpha/beta-hydrolase family N-terminus
Probab=37.80 E-value=4.8e+02 Score=27.01 Aligned_cols=34 Identities=21% Similarity=0.117 Sum_probs=18.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005371 63 CSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLR 97 (699)
Q Consensus 63 ~~pl~l~lL~al~illl~~~~l~~llr~i~r~l~~ 97 (699)
|.++++|-++..+...+ .++++-+.+++.+.+..
T Consensus 7 PR~w~~Qgv~~Gi~~a~-GY~~Gv~~~~l~r~~~~ 40 (208)
T PF15420_consen 7 PRPWLFQGVVSGISAAI-GYGLGVFLRWLWRRLGL 40 (208)
T ss_pred CCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcC
Confidence 45666565555444443 34456666665555444
No 57
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=37.77 E-value=55 Score=21.98 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=16.0
Q ss_pred CccCCcEEEEee-cCCCeeEEEEEEe
Q 005371 254 PFVLNEWIQTKI-EGYEVSGTVEHVG 278 (699)
Q Consensus 254 PFrIGD~I~Iki-~~~~~~G~VeeIg 278 (699)
+|++||.|+|.- ...+..|.|.+|.
T Consensus 1 ~~~~G~~V~I~~G~~~g~~g~i~~i~ 26 (28)
T smart00739 1 KFEVGDTVRVIAGPFKGKVGKVLEVD 26 (28)
T ss_pred CCCCCCEEEEeECCCCCcEEEEEEEc
Confidence 478999999932 1134456676654
No 58
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=37.31 E-value=33 Score=28.05 Aligned_cols=23 Identities=30% Similarity=0.257 Sum_probs=18.7
Q ss_pred ccCCcEEEEeecCCCeeEEEEEEec
Q 005371 255 FVLNEWIQTKIEGYEVSGTVEHVGW 279 (699)
Q Consensus 255 FrIGD~I~Iki~~~~~~G~VeeIgL 279 (699)
|++||.|++| .|+-.-+|..++=
T Consensus 1 f~~GDvV~LK--SGGp~MTV~~v~~ 23 (53)
T PF09926_consen 1 FKIGDVVQLK--SGGPRMTVTEVGP 23 (53)
T ss_pred CCCCCEEEEc--cCCCCeEEEEccc
Confidence 7899999996 4678889988753
No 59
>COG4425 Predicted membrane protein [Function unknown]
Probab=36.99 E-value=7.5e+02 Score=29.02 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=13.7
Q ss_pred CcCcccchhHHHHhhcCChHH
Q 005371 47 PIPYRSNRIRSYNALQCSPQA 67 (699)
Q Consensus 47 pv~~r~~~p~l~~~l~~~pl~ 67 (699)
|-++|.++.+++..+....++
T Consensus 35 ~~~ir~~~~~~~~~~s~tG~~ 55 (588)
T COG4425 35 PQPIRMWSTRLLRSLSATGLL 55 (588)
T ss_pred CcchHHHHHHHHHhhccchHH
Confidence 346777777777766665553
No 60
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=36.66 E-value=2e+02 Score=35.60 Aligned_cols=46 Identities=7% Similarity=0.034 Sum_probs=33.2
Q ss_pred CCccCCcEEEEeecCCCeeEEEEEEeceeeEEEEecCCcEEEEeccccc
Q 005371 253 RPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFT 301 (699)
Q Consensus 253 rPFrIGD~I~Iki~~~~~~G~VeeIgL~sTT~IRt~Dg~~ViIPNs~l~ 301 (699)
.+|++||+|.|+ +.+..|+|.+|.=-. ......++-.+.+|-+.+.
T Consensus 635 ~~~~~Gd~V~v~--~~~~~g~v~~i~~~~-~~~V~~g~~k~~v~~~~l~ 680 (782)
T PRK00409 635 EELKVGDEVKYL--SLGQKGEVLSIPDDK-EAIVQAGIMKMKVPLSDLE 680 (782)
T ss_pred cCCCCCCEEEEc--cCCceEEEEEEcCCC-eEEEEECCEEEEEeHHHce
Confidence 569999999984 567889999994211 2223456788888888874
No 61
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=35.33 E-value=13 Score=32.70 Aligned_cols=39 Identities=10% Similarity=0.011 Sum_probs=0.4
Q ss_pred CCccCCcEEEEeecCCCeeEEEEEEeceeeEEEEecCCcEEEE
Q 005371 253 RPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHI 295 (699)
Q Consensus 253 rPFrIGD~I~Iki~~~~~~G~VeeIgL~sTT~IRt~Dg~~ViI 295 (699)
...++||+|.. .+|..|+|.+++=-+ ..++..+|..+.+
T Consensus 35 ~~Lk~Gd~VvT---~gGi~G~V~~i~~~~-v~lei~~g~~i~v 73 (82)
T PF02699_consen 35 ASLKPGDEVVT---IGGIYGTVVEIDDDT-VVLEIAPGVEITV 73 (82)
T ss_dssp G------------------------------------------
T ss_pred HcCCCCCEEEE---CCcEEEEEEEEeCCE-EEEEECCCeEEEE
Confidence 45799999998 479999999998876 8888887765544
No 62
>PF06011 TRP: Transient receptor potential (TRP) ion channel; InterPro: IPR010308 This family consists of hypothetical proteins of unknown function found in fungi.
Probab=34.96 E-value=7.2e+02 Score=28.22 Aligned_cols=18 Identities=17% Similarity=0.130 Sum_probs=11.9
Q ss_pred hhhhhhccCCccCCcEEE
Q 005371 245 SSAMIHATRPFVLNEWIQ 262 (699)
Q Consensus 245 aGi~I~~~rPFrIGD~I~ 262 (699)
.++.+.+.+.+.+.+.++
T Consensus 367 ~~l~i~f~~~~~~~~~~~ 384 (438)
T PF06011_consen 367 LFLLIAFLPSLNLSEIVR 384 (438)
T ss_pred HHHHHHHhcccCCCcccc
Confidence 445567777777776654
No 63
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=34.78 E-value=1e+03 Score=29.92 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=9.6
Q ss_pred HHHHHhCCchHHHHHHHHHHHHHHHH
Q 005371 209 LFMELLGFSTQKWLTAGGLGTVLLTL 234 (699)
Q Consensus 209 iiL~~lGv~i~~lLa~lGv~glaIgl 234 (699)
..|...++..-.-++...++|+++++
T Consensus 293 ~~l~~~~~~~~~~~Gi~~a~gvl~a~ 318 (910)
T TIGR00833 293 LALSLARLPSFKTLGVSCAVGVLVAL 318 (910)
T ss_pred HHHHHccChHHHHHHHHHHHHHHHHH
Confidence 33334444332223333333444433
No 64
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.66 E-value=1.5e+02 Score=31.07 Aligned_cols=70 Identities=9% Similarity=0.097 Sum_probs=48.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhccCCccCCc
Q 005371 188 NMGFQFAGKAVYSAVWVASASLFMELLGFS-TQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNE 259 (699)
Q Consensus 188 ~~~i~~i~~ii~iiv~iia~iiiL~~lGv~-i~~lLa~lGv~glaIglAaqd~l~Ni~aGi~I~~~rPFrIGD 259 (699)
..+..+....+-.++|+++++.+-+++-++ ........|.+=.+|.|.+-.++.=.+ ...+.-|-|++|-
T Consensus 104 aVl~Dl~~SalwtflwfvGFc~l~nqwqvs~p~~~~~~a~saraaIafsffSilsW~~--~A~lA~qR~~~g~ 174 (233)
T KOG4016|consen 104 AVLADLGVSALWAFLWFVGFCFLANQWQVSKPKENPLGAGSARAAIAFSFFSILSWGG--QAVLAFQRYRIGA 174 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcCcchHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcC
Confidence 345667777788889999999998888665 345556666777778887777665433 2334455677775
No 65
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=34.32 E-value=1.3e+02 Score=29.54 Aligned_cols=16 Identities=13% Similarity=0.341 Sum_probs=13.8
Q ss_pred hhhccCCccCCcEEEE
Q 005371 248 MIHATRPFVLNEWIQT 263 (699)
Q Consensus 248 ~I~~~rPFrIGD~I~I 263 (699)
-+-+-+|.++||.|.+
T Consensus 90 ~~~f~~PV~~GDtL~~ 105 (159)
T PRK13692 90 VLKFEKPIVAGDKLYC 105 (159)
T ss_pred EEEEeCCccCCCEEEE
Confidence 4578899999999987
No 66
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=33.31 E-value=9e+02 Score=28.80 Aligned_cols=9 Identities=33% Similarity=0.397 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 005371 391 ILLDLLRVI 399 (699)
Q Consensus 391 L~~~Il~~~ 399 (699)
++.++.+.+
T Consensus 350 ml~~~~~~~ 358 (533)
T COG1283 350 MLERLYEYI 358 (533)
T ss_pred HHHHHHHHH
Confidence 333333333
No 67
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=33.22 E-value=5.8e+02 Score=29.45 Aligned_cols=20 Identities=20% Similarity=0.092 Sum_probs=8.8
Q ss_pred hCCchHHHHHHHHHHHHHHH
Q 005371 214 LGFSTQKWLTAGGLGTVLLT 233 (699)
Q Consensus 214 lGv~i~~lLa~lGv~glaIg 233 (699)
+-..--++|++...+-++++
T Consensus 398 Lq~EdyALL~GSl~LF~iLa 417 (430)
T PF06123_consen 398 LQSEDYALLMGSLLLFIILA 417 (430)
T ss_pred HHhhhHHHHHHHHHHHHHHH
Confidence 33344455555444433333
No 68
>PRK08156 type III secretion system protein SpaS; Validated
Probab=32.99 E-value=7.6e+02 Score=27.85 Aligned_cols=15 Identities=7% Similarity=-0.126 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHCCCc
Q 005371 391 ILLDLLRVISHHRAR 405 (699)
Q Consensus 391 L~~~Il~~~~e~GIe 405 (699)
+-.+|.+.-++|||.
T Consensus 285 ~A~~IreiA~e~~VP 299 (361)
T PRK08156 285 RALAVRAYAEKVGVP 299 (361)
T ss_pred HHHHHHHHHHHCCCC
Confidence 333444444455443
No 69
>PRK00068 hypothetical protein; Validated
Probab=32.65 E-value=1.2e+03 Score=29.95 Aligned_cols=12 Identities=8% Similarity=0.088 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q 005371 191 FQFAGKAVYSAV 202 (699)
Q Consensus 191 i~~i~~ii~iiv 202 (699)
+++++.++.+++
T Consensus 163 LPf~~~l~~~l~ 174 (970)
T PRK00068 163 LPFYRSLLSYLL 174 (970)
T ss_pred hHHHHHHHHHHH
Confidence 555555555443
No 70
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=32.44 E-value=7.1e+02 Score=27.35 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=12.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Q 005371 187 RNMGFQFAGKAVYSAVWVASASLF 210 (699)
Q Consensus 187 r~~~i~~i~~ii~iiv~iia~iii 210 (699)
+...+.++..++..+..+++.+++
T Consensus 156 r~a~LHvl~D~Lgsv~vIia~i~i 179 (296)
T COG1230 156 RGAYLHVLGDALGSVGVIIAAIVI 179 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334466666665555555444433
No 71
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=32.34 E-value=8.7e+02 Score=32.13 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCch
Q 005371 192 QFAGKAVYSAVWVASASLFMELLGFST 218 (699)
Q Consensus 192 ~~i~~ii~iiv~iia~iiiL~~lGv~i 218 (699)
..+.|-+...+-.+.++++|.+||-+.
T Consensus 1338 QTLsRTI~TSlTTLLallaLllFGG~s 1364 (1403)
T PRK12911 1338 KTLGRTVMTTATTLSVLLILLFVGGGS 1364 (1403)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHcchh
Confidence 344555555555555556666777654
No 72
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=32.02 E-value=8e+02 Score=27.85 Aligned_cols=7 Identities=29% Similarity=0.738 Sum_probs=2.9
Q ss_pred HHHHHhC
Q 005371 209 LFMELLG 215 (699)
Q Consensus 209 iiL~~lG 215 (699)
+.|..+|
T Consensus 361 l~L~~~g 367 (397)
T TIGR01129 361 LILYVFG 367 (397)
T ss_pred HHHHHHh
Confidence 3333444
No 73
>COG4873 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.98 E-value=52 Score=28.24 Aligned_cols=28 Identities=32% Similarity=0.249 Sum_probs=23.2
Q ss_pred CccCCcEEEEeecCCCeeEEEEEEeceeeEEE
Q 005371 254 PFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIV 285 (699)
Q Consensus 254 PFrIGD~I~Iki~~~~~~G~VeeIgL~sTT~I 285 (699)
--.+||.|+++ +|..|.||+++=.+ +.+
T Consensus 23 ~a~vgniief~---dgl~g~vek~nens-viv 50 (81)
T COG4873 23 IAKVGNIIEFK---DGLTGVVEKVNENS-VIV 50 (81)
T ss_pred eeeccceEEEc---ccceeeeeeecCCc-EEE
Confidence 35799999995 68999999999887 544
No 74
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=30.69 E-value=3.8e+02 Score=27.45 Aligned_cols=32 Identities=25% Similarity=0.468 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q 005371 203 WVASASLFMELLGFSTQKWLTAGGLGTVLLTL 234 (699)
Q Consensus 203 ~iia~iiiL~~lGv~i~~lLa~lGv~glaIgl 234 (699)
+.+..-.+|..||+++..+-.++|++-+.+|+
T Consensus 54 f~~~G~~iL~~fgIsl~af~IaGGiiL~~ia~ 85 (203)
T PF01914_consen 54 FAFFGQLILNFFGISLPAFRIAGGIILFLIAL 85 (203)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 33344456778999999998888887776665
No 75
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=30.63 E-value=3.1e+02 Score=28.09 Aligned_cols=34 Identities=18% Similarity=0.436 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 005371 202 VWVASASLFMELLGFSTQKWLTAGGLGTVLLTLA 235 (699)
Q Consensus 202 v~iia~iiiL~~lGv~i~~lLa~lGv~glaIglA 235 (699)
++.+..-.+|..||++...+-.++|++-+.+|+-
T Consensus 56 ~f~~~G~~iL~~fgIsl~afrIaGGiiL~~ia~~ 89 (201)
T TIGR00427 56 IFLVFGDTILKLFGISIDAFRIAGGILLFTIAMD 89 (201)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 4444445677899999999988888887777654
No 76
>PF11674 DUF3270: Protein of unknown function (DUF3270); InterPro: IPR021688 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=30.47 E-value=2.7e+02 Score=25.32 Aligned_cols=49 Identities=14% Similarity=0.105 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhhHH
Q 005371 191 FQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREI 239 (699)
Q Consensus 191 i~~i~~ii~iiv~iia~iiiL~~lGv~i~~lLa~lGv~glaIglAaqd~ 239 (699)
+-++.|+.-+.++.+.+..++-.+++++..-...+.++|+++..+.+..
T Consensus 39 LlFF~nIA~FcI~tvlfsFvfLs~kl~t~~Af~~Ai~~Sl~~~~~~~~~ 87 (90)
T PF11674_consen 39 LLFFANIAFFCIFTVLFSFVFLSLKLNTFWAFPLAILISLAITQLVRKF 87 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666555555555666654433334444455544444433
No 77
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=30.11 E-value=30 Score=28.51 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=10.9
Q ss_pred cCCccCCcEEEEeecCCCeeEEEEEEec
Q 005371 252 TRPFVLNEWIQTKIEGYEVSGTVEHVGW 279 (699)
Q Consensus 252 ~rPFrIGD~I~Iki~~~~~~G~VeeIgL 279 (699)
..||+.||+|++ -+..|+---|.|
T Consensus 3 ~Gpf~~GdrVQl----TD~Kgr~~Ti~L 26 (54)
T PF14801_consen 3 RGPFRAGDRVQL----TDPKGRKHTITL 26 (54)
T ss_dssp --S--TT-EEEE----EETT--EEEEE-
T ss_pred cCCCCCCCEEEE----ccCCCCeeeEEE
Confidence 469999999999 345566544443
No 78
>PF13726 Na_H_antiport_2: Na+-H+ antiporter family
Probab=29.87 E-value=82 Score=28.50 Aligned_cols=45 Identities=18% Similarity=0.212 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhCCch-HHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 005371 203 WVASASLFMELLGFST-QKWLTAGGLGTVLLTLAGREIFTNFLSSA 247 (699)
Q Consensus 203 ~iia~iiiL~~lGv~i-~~lLa~lGv~glaIglAaqd~l~Ni~aGi 247 (699)
+.+.++.+|..+-+++ -+++.++-++|++=|+...++++-|.+|+
T Consensus 5 iaV~vm~~L~LlR~nVvlalliaalvgGl~~Gl~l~~t~~~~~~Gm 50 (88)
T PF13726_consen 5 IAVLVMIVLSLLRVNVVLALLIAALVGGLVGGLGLGETMSAFIDGM 50 (88)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHh
Confidence 3344455556666663 36666777777777888888888888775
No 79
>PRK10739 putative antibiotic transporter; Provisional
Probab=29.76 E-value=3.9e+02 Score=27.40 Aligned_cols=35 Identities=17% Similarity=0.356 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 005371 201 AVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLA 235 (699)
Q Consensus 201 iv~iia~iiiL~~lGv~i~~lLa~lGv~glaIglA 235 (699)
+++.+..-.+|..||+++..+=.++|++-+.+|+-
T Consensus 52 l~f~~~G~~iL~~fGIsl~afrIAGGilL~~ial~ 86 (197)
T PRK10739 52 LVFLFAGEKILAFLNLRTETVSISGGIILFLIAIK 86 (197)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 34444455677899999999988888877776653
No 80
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=29.40 E-value=8.2e+02 Score=28.77 Aligned_cols=16 Identities=19% Similarity=0.229 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHhCC
Q 005371 201 AVWVASASLFMELLGF 216 (699)
Q Consensus 201 iv~iia~iiiL~~lGv 216 (699)
.+..+.+++.|..+|.
T Consensus 438 ~lTTlia~l~L~~~g~ 453 (498)
T PRK05812 438 NITTLIAAIILYALGT 453 (498)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3334444444445553
No 81
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=29.36 E-value=1e+03 Score=28.23 Aligned_cols=12 Identities=8% Similarity=0.027 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 005371 191 FQFAGKAVYSAV 202 (699)
Q Consensus 191 i~~i~~ii~iiv 202 (699)
+.+.|++...++
T Consensus 378 l~lYr~F~n~l~ 389 (518)
T KOG2568|consen 378 LSLYRKFTNTLA 389 (518)
T ss_pred HHHHHHHHHHHH
Confidence 444555444433
No 82
>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)
Probab=29.18 E-value=1.1e+02 Score=26.61 Aligned_cols=31 Identities=13% Similarity=0.116 Sum_probs=22.0
Q ss_pred ccCCccCCcEEEEe-ecCCCeeEEEEEEecee
Q 005371 251 ATRPFVLNEWIQTK-IEGYEVSGTVEHVGWWS 281 (699)
Q Consensus 251 ~~rPFrIGD~I~Ik-i~~~~~~G~VeeIgL~s 281 (699)
-+|.|++||.+.+. .++++..|......+.+
T Consensus 25 NDRdf~VGD~L~L~E~~~~~YTGr~~~~~Ity 56 (72)
T PF12961_consen 25 NDRDFQVGDILVLREWDNGEYTGREIEAEITY 56 (72)
T ss_pred cCCCCCCCCEEEEEEecCCCccccEEEEEEEE
Confidence 56899999999884 24456677766655554
No 83
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=29.16 E-value=1e+03 Score=28.66 Aligned_cols=26 Identities=4% Similarity=-0.213 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc
Q 005371 111 VMTSYIQPLMLWTGAILICRALDPVV 136 (699)
Q Consensus 111 il~sl~~Pl~l~l~~i~i~~al~~l~ 136 (699)
++..+..-+.+++.+++.|.+...+.
T Consensus 49 ~l~~~~~a~fyfLPi~ia~saak~f~ 74 (639)
T PRK15083 49 LAKLVGPMITYLLPLLIGYTGGKLVG 74 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 55556666677777777776665543
No 84
>COG4705 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=29.09 E-value=7e+02 Score=26.27 Aligned_cols=52 Identities=19% Similarity=0.218 Sum_probs=26.2
Q ss_pred HHhCCc-hHHHHHHHHHHHHHHHHHhhHHHHHHH-hhhhhhccCCcc--CCcEEEE
Q 005371 212 ELLGFS-TQKWLTAGGLGTVLLTLAGREIFTNFL-SSAMIHATRPFV--LNEWIQT 263 (699)
Q Consensus 212 ~~lGv~-i~~lLa~lGv~glaIglAaqd~l~Ni~-aGi~I~~~rPFr--IGD~I~I 263 (699)
+.+|.. .++.+..+|+++++.+.---.=+..+. =++..+++||+- -||...=
T Consensus 162 es~glgy~~g~lv~~~vIaliaaayyl~~ld~Vl~FWlAfIlTRPlGAt~GD~Ltk 217 (258)
T COG4705 162 ESLGLGYIQGALVFAGVIALIAAAYYLTKLDDVLLFWLAFILTRPLGATFGDFLTK 217 (258)
T ss_pred hhcCchhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccchhhhHHhcC
Confidence 355554 344555556665554321111122222 345567889985 5787653
No 85
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=29.04 E-value=1.2e+03 Score=29.12 Aligned_cols=15 Identities=13% Similarity=0.297 Sum_probs=8.4
Q ss_pred ccCCCCCCchhhhHh
Q 005371 649 IEEGMPSSQPVVKEL 663 (699)
Q Consensus 649 ~~~~~~~~~~~~~~~ 663 (699)
-|+||....+|++++
T Consensus 778 ~~~~~~~~~~~~~~~ 792 (810)
T TIGR00844 778 SEDEMADDEAESENM 792 (810)
T ss_pred cchhhccchhccccc
Confidence 455565555666554
No 86
>PRK03612 spermidine synthase; Provisional
Probab=28.26 E-value=1e+03 Score=27.88 Aligned_cols=31 Identities=23% Similarity=0.035 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCchHHHHHH
Q 005371 194 AGKAVYSAVWVASASLFMELLGFSTQKWLTA 224 (699)
Q Consensus 194 i~~ii~iiv~iia~iiiL~~lGv~i~~lLa~ 224 (699)
+..+=.++--+++.++++..+|...+.++++
T Consensus 153 ~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a 183 (521)
T PRK03612 153 ADYLGALVGGLAFPFLLLPRLGLIRTAALTG 183 (521)
T ss_pred HHhHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 3333333334444555666888876555443
No 87
>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the Escherichia coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site []. The structure of the S1 domain is very similar to that of cold shock proteins. This suggests that they may both be derived from an ancient nucleic acid-binding protein []. More information about these proteins can be found at Protein of the Month: RNA Exosomes []. This entry does not include translation initiation factor IF-1 S1 domains.; GO: 0003723 RNA binding; PDB: 3L7Z_F 2JE6_I 2JEA_I 2JEB_I 1E3P_A 2Y0S_E 1WI5_A 2BH8_A 2CQO_A 2EQS_A ....
Probab=27.84 E-value=3e+02 Score=22.56 Aligned_cols=46 Identities=15% Similarity=0.180 Sum_probs=35.0
Q ss_pred ccCCcEEEEeecCCCeeEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEeccC
Q 005371 255 FVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQ 310 (699)
Q Consensus 255 FrIGD~I~Iki~~~~~~G~VeeIgL~sTT~IRt~Dg~~ViIPNs~l~s~~I~N~Sr 310 (699)
+++||.+ .|+|.+|.-.. ..+.-.++-.-+||.+.+....+.+...
T Consensus 2 ~~~G~iv---------~g~V~~v~~~g-~~V~l~~~~~g~ip~~~l~~~~~~~~~~ 47 (74)
T PF00575_consen 2 LKEGDIV---------EGKVTSVEDFG-VFVDLGNGIEGFIPISELSDDRIDDPSE 47 (74)
T ss_dssp SSTTSEE---------EEEEEEEETTE-EEEEESTSSEEEEEGGGSSSSEESSSHG
T ss_pred CCCCCEE---------EEEEEEEECCE-EEEEECCcEEEEEEeehhcCcccccccc
Confidence 4566665 48999999877 7777778999999999999874444443
No 88
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=27.37 E-value=94 Score=29.51 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=14.0
Q ss_pred hhhccCCccCCcEEEE
Q 005371 248 MIHATRPFVLNEWIQT 263 (699)
Q Consensus 248 ~I~~~rPFrIGD~I~I 263 (699)
-+-+.+|..+||.|.+
T Consensus 82 ~~rf~~PV~~GDtl~~ 97 (142)
T cd03452 82 NLRFLEPVYPGDTIQV 97 (142)
T ss_pred eEEECCCCCCCCEEEE
Confidence 4678899999999987
No 89
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=27.19 E-value=1.3e+03 Score=28.72 Aligned_cols=21 Identities=29% Similarity=0.234 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCc
Q 005371 197 AVYSAVWVASASLFMELLGFS 217 (699)
Q Consensus 197 ii~iiv~iia~iiiL~~lGv~ 217 (699)
++...+-.+.+++.|..+|..
T Consensus 379 Il~s~lTTlia~lpL~~~g~g 399 (758)
T PRK13023 379 IVDANLTTLIAALVLFLLGSG 399 (758)
T ss_pred HHHHHHHHHHHHHHHHHHhch
Confidence 333333333444444445543
No 90
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=27.18 E-value=1.2e+03 Score=29.19 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=13.5
Q ss_pred HHHHHHHHCCCccC-------CCcEEEEEeecc
Q 005371 394 DLLRVISHHRARLA-------TPIRTVQKIFSD 419 (699)
Q Consensus 394 ~Il~~~~e~GIe~a-------~P~qtv~~~~~~ 419 (699)
-+.--+-=||+..+ .++-++...|..
T Consensus 420 ~V~~SIivHG~S~~~l~lg~~~~~~~~~~~~~~ 452 (810)
T TIGR00844 420 SIVTSVIVHGSSVAVIMLGRYLNTVTLTATPTT 452 (810)
T ss_pred HHHHHHhhccccchHHHhccccCceEEEEeeee
Confidence 33344455776643 455566555543
No 91
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=27.10 E-value=1.3e+02 Score=28.04 Aligned_cols=16 Identities=13% Similarity=0.181 Sum_probs=14.2
Q ss_pred hhhccCCccCCcEEEE
Q 005371 248 MIHATRPFVLNEWIQT 263 (699)
Q Consensus 248 ~I~~~rPFrIGD~I~I 263 (699)
-+-|.+|+.+||.|.+
T Consensus 82 ~~~f~~pv~~Gd~l~~ 97 (140)
T cd03454 82 ELRWPRPVRPGDTLSV 97 (140)
T ss_pred eeEeCCCCCCCCEEEE
Confidence 4678999999999987
No 92
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=27.10 E-value=1.1e+03 Score=28.05 Aligned_cols=58 Identities=14% Similarity=0.114 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-------C------chHHHHHHHHH-------HHHHHHHHhhHHHHHHHhhhh
Q 005371 191 FQFAGKAVYSAVWVASASLFMELLG-------F------STQKWLTAGGL-------GTVLLTLAGREIFTNFLSSAM 248 (699)
Q Consensus 191 i~~i~~ii~iiv~iia~iiiL~~lG-------v------~i~~lLa~lGv-------~glaIglAaqd~l~Ni~aGi~ 248 (699)
..++.++..+++.+..++.+|..+| + -+.+++..+|. .+++.||.+|+++-..++.++
T Consensus 473 ~~fl~~A~~ii~~~siviw~l~~~~~~~~~~S~l~~~g~~~~P~~~p~g~~~~w~~~~ali~g~~aKE~vv~~l~~~y 550 (591)
T TIGR00437 473 RSFIKKAGTIIVIGSVLIWFLSSFPGGKILESWLAAIGSIMAPLFVPLGKILDWFASVALIFGFVAKEVVVATLGVLY 550 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577788888877777778888776 1 13344545554 467779999998877777554
No 93
>PF09378 HAS-barrel: HAS barrel domain; InterPro: IPR018538 The HAS barrel is named after HerA-ATP Synthase. In ATP synthases, this domain is implicated in the assembly of the catalytic toroid and docking of accessory subunits, such as the subunit of the ATP synthase complex. Similar roles in docking of the functional partner, the NurA nuclease, and assembly of the HerA toroid complex appear likely for the HAS-barrel of the HerA family []. ; PDB: 3OAA_I.
Probab=27.08 E-value=55 Score=28.31 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=19.8
Q ss_pred CccCCcEEEEeec-CCCeeEEEEEEece
Q 005371 254 PFVLNEWIQTKIE-GYEVSGTVEHVGWW 280 (699)
Q Consensus 254 PFrIGD~I~Iki~-~~~~~G~VeeIgL~ 280 (699)
+.++||+|.++.+ +..+.|.|++|...
T Consensus 22 ~v~~GeyV~i~~~~~~~vlG~V~~i~~~ 49 (91)
T PF09378_consen 22 DVRVGEYVVIEYDDGEKVLGMVTSISRG 49 (91)
T ss_dssp T-BTTEEEEES----TTEEEEEEEEES-
T ss_pred CCCcCeEEEEEEechhhhhhhhheeEEc
Confidence 8999999999755 67789999988773
No 94
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=26.68 E-value=21 Score=38.57 Aligned_cols=8 Identities=13% Similarity=0.563 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q 005371 198 VYSAVWVA 205 (699)
Q Consensus 198 i~iiv~ii 205 (699)
+.++||+-
T Consensus 177 laiLIWlY 184 (381)
T PF05297_consen 177 LAILIWLY 184 (381)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 33444443
No 95
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=26.23 E-value=7.7e+02 Score=27.72 Aligned_cols=113 Identities=15% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc-------------hhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 005371 66 QALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKK-------------SKTHHVMTSYIQPLMLWTGAILICRAL 132 (699)
Q Consensus 66 l~l~lL~al~illl~~~~l~~llr~i~r~l~~rt~~~~~~-------------~~~~~il~sl~~Pl~l~l~~i~i~~al 132 (699)
..+..++.+.++++++.++..+++....+-.+...-.|.+ .....++.++.+.+.+.+++.++....
T Consensus 88 ~~~~~~lp~~~~~~~~~i~~~~~Q~G~~fs~k~l~Pk~~rlNPi~G~KriFS~~~l~el~KsllK~~~~~~v~~~~~~~~ 167 (359)
T PRK05702 88 EALLALLPILLLLVLAALLAPVLQGGLLFSPKALKPKFSKLNPLKGLKRMFSAQGLVELLKSLLKVLLVGGVAYFVLWSN 167 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCcccccccCCCChhhcCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred c--cccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005371 133 D--PVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFM 178 (699)
Q Consensus 133 ~--~l~lp~~~~~~v~~~ll~~l~siliIl~~~~ll~~li~~i~~~l~ 178 (699)
. .+.+.......+...+...+..++..+++++++..+++....++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~ 215 (359)
T PRK05702 168 LDELLSLAAEPLEAALGHALDLVLKLLLLVVLALLVIAAIDVPFQRWQ 215 (359)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 96
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=26.18 E-value=1.4e+03 Score=28.70 Aligned_cols=29 Identities=7% Similarity=0.023 Sum_probs=13.1
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 005371 101 NSWKKSKTHHVMTSYIQPLMLWTGAILIC 129 (699)
Q Consensus 101 ~~~~~~~~~~il~sl~~Pl~l~l~~i~i~ 129 (699)
..|+......+-..+.....++-++=++|
T Consensus 454 ~~W~~~dp~ll~E~lfAiA~V~S~lrl~~ 482 (822)
T KOG3609|consen 454 MHWPSFDPSLLAEGLFAIANVLSFLKLFY 482 (822)
T ss_pred hhCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 56766555555444433333333333333
No 97
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=26.14 E-value=1.1e+03 Score=27.45 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 005371 113 TSYIQPLMLWTGAILICRALD 133 (699)
Q Consensus 113 ~sl~~Pl~l~l~~i~i~~al~ 133 (699)
..+.-|+..++++++++..+.
T Consensus 156 ~~~a~~~~~~lf~~l~~~~~~ 176 (442)
T COG1457 156 ERIAVPLLLLLFLYLLALLFR 176 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344456666666666666555
No 98
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=26.14 E-value=1.2e+03 Score=28.16 Aligned_cols=29 Identities=17% Similarity=0.108 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 005371 107 KTHHVMTSYIQPLMLWTGAILICRALDPV 135 (699)
Q Consensus 107 ~~~~il~sl~~Pl~l~l~~i~i~~al~~l 135 (699)
..+.++..+..-+.+|+.+++.|.+...+
T Consensus 141 ~~y~il~~i~~a~FyFLPi~ia~saAkkf 169 (627)
T PRK09824 141 GTYKILFAASDALFFFFPIILGYTAGKKF 169 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566766666666666666666544443
No 99
>COG2142 SdhD Succinate dehydrogenase, hydrophobic anchor subunit [Energy production and conversion]
Probab=25.96 E-value=5.8e+02 Score=24.25 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=15.6
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHH
Q 005371 62 QCSPQALKLVPGIAIIVFATWGLGPL 87 (699)
Q Consensus 62 ~~~pl~l~lL~al~illl~~~~l~~l 87 (699)
|...++++.+-+++++++.+|.+..+
T Consensus 13 G~~~~l~qRvTav~Lv~l~~~~l~~~ 38 (117)
T COG2142 13 GSHDWLLQRVTAVILVLLVIWHLYFL 38 (117)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667777777666666655444
No 100
>COG1329 Transcriptional regulators, similar to M. xanthus CarD [Transcription]
Probab=25.69 E-value=1.4e+02 Score=30.01 Aligned_cols=46 Identities=15% Similarity=0.154 Sum_probs=28.6
Q ss_pred CccCCcEEEEeecCCCeeEEEEEEece--------eeEEEEecCCcEEEEecccccc
Q 005371 254 PFVLNEWIQTKIEGYEVSGTVEHVGWW--------SPTIVRGEDREAVHIPNHKFTV 302 (699)
Q Consensus 254 PFrIGD~I~Iki~~~~~~G~VeeIgL~--------sTT~IRt~Dg~~ViIPNs~l~s 302 (699)
.|++||.|..+..| .|.|..|.-. |-+.=-..++-.+.||-++..+
T Consensus 4 ~Fk~Gd~VVYP~HG---vG~I~~Ieeke~~Ge~~~yyVI~f~~~dm~v~VP~~ka~~ 57 (166)
T COG1329 4 AFKIGDHVVYPAHG---VGIIQAIEEKEIAGETLEYYVIDFPQSDMTVMVPVAKADS 57 (166)
T ss_pred cccCCCEEEecCCC---ceeeehhhhHhhcCceeEEEEEEEcCCCcEEEeeccchhh
Confidence 69999999996432 5788776432 2022224556667777766654
No 101
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=25.41 E-value=4.2e+02 Score=30.64 Aligned_cols=11 Identities=9% Similarity=0.241 Sum_probs=6.2
Q ss_pred HHHHHHHHHHH
Q 005371 109 HHVMTSYIQPL 119 (699)
Q Consensus 109 ~~il~sl~~Pl 119 (699)
.+++..+..|.
T Consensus 225 ~~ll~~ItdP~ 235 (436)
T COG1030 225 ERLLNWITDPS 235 (436)
T ss_pred HHHHHHhcCcH
Confidence 35556665665
No 102
>PF02559 CarD_CdnL_TRCF: CarD-like/TRCF domain; InterPro: IPR003711 The bacterium Myxococcus xanthus responds to blue light by producing carotenoids. It also responds to starvation conditions by developing fruiting bodies, where the cells differentiate into myxospores. Each response entails the transcriptional activation of a separate set of genes. A single gene, carD, is required for the activation of both light- and starvation-inducible genes []. The predicted protein contains four repeats of a DNA-binding domain present in mammalian high mobility group I(Y) proteins and other nuclear proteins from animals and plants. Other peptide stretches on CarD also resemble functional domains typical of eukaryotic transcription factors, including a very acidic region and a leucine zipper. High mobility group yI(Y) proteins are known to bind the minor groove of A+T-rich DNA [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3MLQ_H 2EYQ_A.
Probab=25.18 E-value=1.8e+02 Score=25.87 Aligned_cols=44 Identities=11% Similarity=0.228 Sum_probs=25.6
Q ss_pred CccCCcEEEEeecCCCeeEEEEEEeceee-------EEEEecCCcEEEEecccc
Q 005371 254 PFVLNEWIQTKIEGYEVSGTVEHVGWWSP-------TIVRGEDREAVHIPNHKF 300 (699)
Q Consensus 254 PFrIGD~I~Iki~~~~~~G~VeeIgL~sT-------T~IRt~Dg~~ViIPNs~l 300 (699)
.|++||+|.-. + .=-|+|++|.-... -.|+-.++..++||-..+
T Consensus 1 mf~~GD~VVh~--~-~Gv~~i~~i~~~~~~~~~~~yy~L~~~~~~~i~vPv~~~ 51 (98)
T PF02559_consen 1 MFKIGDYVVHP--N-HGVGRIEGIEEIEFGGEKQEYYVLEYADDDTIYVPVDNA 51 (98)
T ss_dssp T--TTSEEEET--T-TEEEEEEEEEEEECTTEEEEEEEEEECCCEEEEEECCCG
T ss_pred CCCCCCEEEEC--C-CceEEEEEEEEEeeCCeeEEEEEEEECCCCEEEEEcCCh
Confidence 48999999872 2 23567766654320 344445555788887765
No 103
>PF05437 AzlD: Branched-chain amino acid transport protein (AzlD); InterPro: IPR008407 This family consists of a number of bacterial and archaeal branched-chain amino acid transport proteins. AzlD, a member of this group, has been shown by mutational analysis to be involved in branched-chain amino acid transport, and to be involved in conferring resistance to 4-azaleucine []. However, its exact role in these processes is not yet clear []. Based on its hydropathy profile, it has been suggested to be a membrane protein [].
Probab=25.18 E-value=4.9e+02 Score=23.11 Aligned_cols=26 Identities=19% Similarity=0.324 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhhh
Q 005371 225 GGLGTVLLTLAGREIFTNFLSSAMIH 250 (699)
Q Consensus 225 lGv~glaIglAaqd~l~Ni~aGi~I~ 250 (699)
+.+.++++++-.++++-.++.|+..+
T Consensus 70 a~~~~~~~~~~~~~~~~~v~~G~~~~ 95 (99)
T PF05437_consen 70 AALVAALVALRTRNLLLSVLAGVAAF 95 (99)
T ss_pred HHHHHHHHHHHHcchHHHHHHHHHHH
Confidence 44556677788889999999887643
No 104
>PRK04439 S-adenosylmethionine synthetase; Provisional
Probab=25.10 E-value=2.3e+02 Score=32.26 Aligned_cols=80 Identities=13% Similarity=0.255 Sum_probs=58.0
Q ss_pred EEEEEeccCCHHHHHHHHHHHHHHHH------hCCCccccccceEEEEEeeCCCCceEEEEEEEEEec---CChhhHHHH
Q 005371 317 KTHLAISHLDVHKINSIVADMRKVLA------KNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKT---SHHEEYLCV 387 (699)
Q Consensus 317 ~i~l~I~ytd~ekv~~l~~~i~e~L~------~~p~v~~~~~~p~V~v~~~~~~d~sv~i~V~~~v~~---~~~~~~~~v 387 (699)
...+++.|.+....++++-.+.++|. ++|.+-.| +-+.++.. +..+.+.|-|-.-+ .+-++|+..
T Consensus 156 DTS~gVGyAPlS~~E~~Vl~~E~~lns~~~k~~~P~~GeD-----iKVMG~R~-g~~i~lTVa~a~v~r~v~~~~~Y~~~ 229 (399)
T PRK04439 156 DTSFGVGYAPLSETERLVLETERYLNSEEFKKRFPEVGED-----IKVMGLRN-GDEITLTIAMALVDRYVNDVDEYFEV 229 (399)
T ss_pred cccceeecCCCCHHHHHHHHHHHHhcCcchhhcCCCcCCC-----eEEEEEEc-CCEEEEEEEhHHhhhhcCCHHHHHHH
Confidence 46789999888888998888999884 45555444 44555544 24677777654443 266889999
Q ss_pred HHHHHHHHHHHHHHC
Q 005371 388 KEAILLDLLRVISHH 402 (699)
Q Consensus 388 r~eL~~~Il~~~~e~ 402 (699)
++++...+.+...+.
T Consensus 230 k~~v~~~v~~~a~~~ 244 (399)
T PRK04439 230 KEEVKEKVEDLAQKY 244 (399)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988655
No 105
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=24.91 E-value=1.4e+03 Score=28.48 Aligned_cols=8 Identities=13% Similarity=0.372 Sum_probs=4.7
Q ss_pred HHHHhCCc
Q 005371 210 FMELLGFS 217 (699)
Q Consensus 210 iL~~lGv~ 217 (699)
+-..+|++
T Consensus 287 lae~~Gl~ 294 (832)
T PLN03159 287 ITDAIGTH 294 (832)
T ss_pred HHHHhCcc
Confidence 33567775
No 106
>PRK05415 hypothetical protein; Provisional
Probab=24.73 E-value=1e+03 Score=26.70 Aligned_cols=59 Identities=10% Similarity=0.027 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcccchhhHHHHHHHHHHHHHH----HHHHHHHHHhCCchHHH
Q 005371 159 VLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWV----ASASLFMELLGFSTQKW 221 (699)
Q Consensus 159 Il~~~~ll~~li~~i~~~l~~~~~~~~~r~~~i~~i~~ii~iiv~i----ia~iiiL~~lGv~i~~l 221 (699)
+++++|.-.++|+.+.+.|.-+.. ....+++++.++.-+++. ++.-+.++.+|.++...
T Consensus 227 ~l~v~~~n~rmI~~ia~lYG~~lg----~~~~~rL~r~V~~~la~~G~~e~~~~l~~~~l~~~l~~~ 289 (341)
T PRK05415 227 MAFIAWRNLRLIRRIAELYGIELG----YLSRIRLFRLVLANIAFAGASELVDDLGMDWLSQDLAAK 289 (341)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 445677777777777666654432 222234444444444333 22333445666665443
No 107
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=24.50 E-value=2.4e+02 Score=28.18 Aligned_cols=14 Identities=7% Similarity=-0.007 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 005371 196 KAVYSAVWVASASL 209 (699)
Q Consensus 196 ~ii~iiv~iia~ii 209 (699)
+...++++++.+++
T Consensus 73 ~~~~y~l~~iPll~ 86 (182)
T PF09323_consen 73 KLWSYFLFLIPLLI 86 (182)
T ss_pred ccHHHHHHHHHHHH
Confidence 44444444444433
No 108
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=23.96 E-value=2.2e+02 Score=28.33 Aligned_cols=11 Identities=18% Similarity=0.265 Sum_probs=5.4
Q ss_pred HHHHHHHHHHH
Q 005371 224 AGGLGTVLLTL 234 (699)
Q Consensus 224 ~lGv~glaIgl 234 (699)
++|++.+|+|+
T Consensus 40 ~lg~~~lAlg~ 50 (191)
T PF04156_consen 40 ILGIALLALGV 50 (191)
T ss_pred HHHHHHHHHHH
Confidence 44555555553
No 109
>PRK11715 inner membrane protein; Provisional
Probab=23.27 E-value=1.2e+03 Score=27.01 Aligned_cols=21 Identities=24% Similarity=0.077 Sum_probs=10.7
Q ss_pred HhCCchHHHHHHHHHHHHHHH
Q 005371 213 LLGFSTQKWLTAGGLGTVLLT 233 (699)
Q Consensus 213 ~lGv~i~~lLa~lGv~glaIg 233 (699)
++-..--++|++...+-++++
T Consensus 403 lLq~EDyALL~GSllLF~~La 423 (436)
T PRK11715 403 LLQSEDYALLLGSLLLFAVLA 423 (436)
T ss_pred HHHHhHHHHHHHHHHHHHHHH
Confidence 344444466666555544444
No 110
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=23.25 E-value=4.9e+02 Score=33.93 Aligned_cols=26 Identities=15% Similarity=0.075 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCchHHH
Q 005371 196 KAVYSAVWVASASLFMELLGFSTQKW 221 (699)
Q Consensus 196 ~ii~iiv~iia~iiiL~~lGv~i~~l 221 (699)
-.+.+.+.++.++.+|..+|+++..+
T Consensus 1079 v~l~I~~i~~~~~g~M~~~gisLN~v 1104 (1204)
T TIGR00917 1079 VVISVGMIVVNLVGIMHLWNISLNAV 1104 (1204)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHhHH
Confidence 34455666677777888889886544
No 111
>KOG3386 consensus Copper transporter [Inorganic ion transport and metabolism]
Probab=23.18 E-value=7.4e+02 Score=24.55 Aligned_cols=43 Identities=12% Similarity=0.016 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q 005371 190 GFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTL 234 (699)
Q Consensus 190 ~i~~i~~ii~iiv~iia~iiiL~~lGv~i~~lLa~lGv~glaIgl 234 (699)
...+++.++.++=++++-++.|...-+|.. +..+.++|+++|+
T Consensus 93 ~~h~~qt~l~~~Q~~~sY~LMLifMtfN~~--l~Lavv~Ga~~G~ 135 (155)
T KOG3386|consen 93 ASHLIQTLLYVVQLGFSYLLMLIFMTFNGY--LFLAVVLGAGVGY 135 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHhhhh
Confidence 355666666666666666666666656543 4444566777765
No 112
>PRK08343 secD preprotein translocase subunit SecD; Reviewed
Probab=22.98 E-value=1e+03 Score=27.34 Aligned_cols=20 Identities=15% Similarity=0.145 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHhCC
Q 005371 197 AVYSAVWVASASLFMELLGF 216 (699)
Q Consensus 197 ii~iiv~iia~iiiL~~lGv 216 (699)
++...+-.+++++.|..+|.
T Consensus 362 Il~t~lTTiia~lpL~~~g~ 381 (417)
T PRK08343 362 IFAAAATTIAAMSPLAVMGL 381 (417)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 33333444444444555553
No 113
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=22.96 E-value=9.5e+02 Score=25.70 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=24.3
Q ss_pred eEEEEEEEecc-CCHHHHHHHHHHHHHHHHhC
Q 005371 314 WRIKTHLAISH-LDVHKINSIVADMRKVLAKN 344 (699)
Q Consensus 314 ~ri~i~l~I~y-td~ekv~~l~~~i~e~L~~~ 344 (699)
..+.+++.++. .+.++..++.+++++.+++.
T Consensus 243 ~~v~v~i~v~~~~~~~e~h~i~~~ie~~l~~~ 274 (299)
T PRK09509 243 RFIQLHLEMEDNLPLVQAHMIADQVEQALLRR 274 (299)
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 34567777776 67888898888999998765
No 114
>PF07290 DUF1449: Protein of unknown function (DUF1449); InterPro: IPR010840 This family consists of several bacterial proteins of around 210 residues in length. The function of this family is unknown.
Probab=22.86 E-value=6.9e+02 Score=25.86 Aligned_cols=12 Identities=33% Similarity=0.800 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHH
Q 005371 116 IQPLMLWTGAIL 127 (699)
Q Consensus 116 ~~Pl~l~l~~i~ 127 (699)
+-|+++|+++.+
T Consensus 62 kvPlLI~L~l~l 73 (202)
T PF07290_consen 62 KVPLLIWLVLLL 73 (202)
T ss_pred ccHHHHHHHHHH
Confidence 346666665544
No 115
>PF14221 DUF4330: Domain of unknown function (DUF4330)
Probab=22.81 E-value=1.2e+02 Score=30.29 Aligned_cols=43 Identities=23% Similarity=0.257 Sum_probs=30.2
Q ss_pred ccCCcEEEEeecCCCeeE--EEEEEeceeeEE-EEecCCcEEEEecc
Q 005371 255 FVLNEWIQTKIEGYEVSG--TVEHVGWWSPTI-VRGEDREAVHIPNH 298 (699)
Q Consensus 255 FrIGD~I~Iki~~~~~~G--~VeeIgL~sTT~-IRt~Dg~~ViIPNs 298 (699)
|+.||.+.+.+. +...| +|+++.....+. ..+.||+.+..|.-
T Consensus 72 ~~~gd~~~~~~r-nqp~G~v~V~~V~~~p~~~~~~~~dG~v~~~~dP 117 (168)
T PF14221_consen 72 IKEGDKTNIVIR-NQPAGQVTVKDVQVLPRTVVVPQPDGSVVEAPDP 117 (168)
T ss_pred ccCCCEEEEecc-CccccceEEEEEEEEccceEEECCCCeEEEccCC
Confidence 899999987433 44566 888888765233 33479998887765
No 116
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=22.79 E-value=2.1e+02 Score=26.31 Aligned_cols=16 Identities=13% Similarity=0.239 Sum_probs=13.8
Q ss_pred hhhccCCccCCcEEEE
Q 005371 248 MIHATRPFVLNEWIQT 263 (699)
Q Consensus 248 ~I~~~rPFrIGD~I~I 263 (699)
-+-+.+|..+||.|.+
T Consensus 74 ~~rf~~Pv~~Gdtl~~ 89 (127)
T cd03453 74 GVRFTKPVPVPDTLTC 89 (127)
T ss_pred EEEECCcCcCCCEEEE
Confidence 3578899999999987
No 117
>PRK11111 hypothetical protein; Provisional
Probab=22.69 E-value=4.9e+02 Score=27.01 Aligned_cols=34 Identities=21% Similarity=0.445 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 005371 202 VWVASASLFMELLGFSTQKWLTAGGLGTVLLTLA 235 (699)
Q Consensus 202 v~iia~iiiL~~lGv~i~~lLa~lGv~glaIglA 235 (699)
++.+..-.+|..||+++.++-.++|++-+.+|+-
T Consensus 59 ~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ial~ 92 (214)
T PRK11111 59 ISLFLGDFILNLFGISIDSFRIAGGILVVTIAMS 92 (214)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 4444455677899999999999988887777664
No 118
>PF01941 AdoMet_Synthase: S-adenosylmethionine synthetase (AdoMet synthetase); InterPro: IPR002795 A highly diverged class of S-adenosylmethionine synthetases have been identified in the archaea. S-adenosylmethionine is the primary alkylating agent in all known organisms. ATP:L-methionine S-adenosyltransferase (MAT) catalyses the only known biosynthetic route to this central metabolite. Although the amino acid sequence of MAT is strongly conserved among bacteria and eukarya (see IPR002133 from INTERPRO) no homologues had been recognised in the completed genome sequences of any archaea. The identification of a second major class of MAT emphasises the long evolutionary history of the archaeal lineage and the structural diversity found even in crucial metabolic enzymes []. Three bacterial genomes encode both the archaeal and eukaryotic/bacterial types of MAT [].; GO: 0004478 methionine adenosyltransferase activity, 0005524 ATP binding, 0006730 one-carbon metabolic process
Probab=22.58 E-value=3.1e+02 Score=31.29 Aligned_cols=80 Identities=14% Similarity=0.230 Sum_probs=58.6
Q ss_pred EEEEEeccCCHHHHHHHHHHHHHHHHhC------CCccccccceEEEEEeeCCCCceEEEEEEEEEec---CChhhHHHH
Q 005371 317 KTHLAISHLDVHKINSIVADMRKVLAKN------PQVEQQRLHRRVFLDNINPENQALLILVSCFVKT---SHHEEYLCV 387 (699)
Q Consensus 317 ~i~l~I~ytd~ekv~~l~~~i~e~L~~~------p~v~~~~~~p~V~v~~~~~~d~sv~i~V~~~v~~---~~~~~~~~v 387 (699)
.+.+++.|.+....++++-.+.++|.+. |.+-.| +-+.++.. +..+.+.|-|-.-+ .+-++|+..
T Consensus 156 DTS~gVGyAPlS~~E~~Vl~~Er~lns~~fk~~~p~~GeD-----iKVMG~R~-g~~i~LTvA~a~v~r~v~~~~~Y~~~ 229 (396)
T PF01941_consen 156 DTSFGVGYAPLSETEKLVLETERYLNSPEFKKKFPEVGED-----IKVMGLRE-GDKITLTVAMAFVDRYVSSLDEYFER 229 (396)
T ss_pred CccceeccCCccHHHHHHHHHHHHhccccccccCCCcCCC-----eEEEEEEe-CCEEEEEEEhhhhhhhcCCHHHHHHH
Confidence 4679999988888999888898988774 333222 44555543 24677777665443 366889999
Q ss_pred HHHHHHHHHHHHHHC
Q 005371 388 KEAILLDLLRVISHH 402 (699)
Q Consensus 388 r~eL~~~Il~~~~e~ 402 (699)
++++...+.+...++
T Consensus 230 k~~v~~~v~~~a~~~ 244 (396)
T PF01941_consen 230 KEEVKEEVEDYAAKY 244 (396)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988876
No 119
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=22.42 E-value=3.5e+02 Score=31.80 Aligned_cols=29 Identities=28% Similarity=0.370 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q 005371 203 WVASASLFMELLGFSTQKWLTAGGLGTVLLTLA 235 (699)
Q Consensus 203 ~iia~iiiL~~lGv~i~~lLa~lGv~glaIglA 235 (699)
.++.++.+|..+|.. |+..|++|++++++
T Consensus 378 n~~lil~vls~lgat----LtLpgIAGiILtIG 406 (506)
T COG0342 378 NGVLILAVLSLLGAT----LTLPGIAGIILTIG 406 (506)
T ss_pred HHHHHHHHHHHhccc----ccchhhhHHHHhhh
Confidence 444445555555543 44555555555443
No 120
>PLN03223 Polycystin cation channel protein; Provisional
Probab=22.31 E-value=8.8e+02 Score=32.23 Aligned_cols=131 Identities=6% Similarity=-0.024 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccccCCchhhHHHHH
Q 005371 68 LKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKSKTHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQ 147 (699)
Q Consensus 68 l~lL~al~illl~~~~l~~llr~i~r~l~~rt~~~~~~~~~~~il~sl~~Pl~l~l~~i~i~~al~~l~lp~~~~~~v~~ 147 (699)
+.-+......+.++.++-.++++++-+-+.++-...-. ....-+..+..-+.+++++++.|..++.+.+.......-
T Consensus 1284 La~~~q~Y~aL~GIlIFLsiLKfLRLLRFNPrL~vLt~-TLrrAapDLa~F~IIF~IVF~AFAqLG~LLFGt~ve~FS-- 1360 (1634)
T PLN03223 1284 LVDYFQWYMTLSGINIILLLGRILKLMDFQPRLGVITR-TLWLAGADLMHFFVIFGMVFVGYAFIGHVIFGNASVHFS-- 1360 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhc--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 005371 148 RLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELL 214 (699)
Q Consensus 148 ~ll~~l~siliIl~~~~ll~~li~~i~~~l~~~~~~~~~r~~~i~~i~~ii~iiv~iia~iiiL~~l 214 (699)
.+..++..++.+...-...+....+....... ++..++.+...++.++++|.+|
T Consensus 1361 ---Tf~sSL~TLFqMLLGDfdYF~eDLk~l~e~nr----------VLGPIYFfSFILLV~FILLNMF 1414 (1634)
T PLN03223 1361 ---DMTDSINSLFENLLGDITYFNEDLKNLTGLQF----------VVGMIYFYSYNIFVFMILFNFL 1414 (1634)
T ss_pred ---CHHHHHHHHHHHHHcCchHHHHHHHhhhcccc----------hHHHHHHHHHHHHHHHHHHHHH
No 121
>PRK10694 acyl-CoA esterase; Provisional
Probab=22.24 E-value=1.1e+02 Score=29.25 Aligned_cols=30 Identities=13% Similarity=0.110 Sum_probs=24.0
Q ss_pred hhhccCCccCCcEEEEeecCCCeeEEEEEEeceeeEEE
Q 005371 248 MIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIV 285 (699)
Q Consensus 248 ~I~~~rPFrIGD~I~Iki~~~~~~G~VeeIgL~sTT~I 285 (699)
-|-|-+|.++||+|++ .++|+.+|=.+ ..+
T Consensus 61 ~i~F~~Pv~~Gd~l~~-------~a~V~~~g~sS-~~v 90 (133)
T PRK10694 61 GMTFLRPVAVGDVVCC-------YARCVKTGTTS-ISI 90 (133)
T ss_pred ceEECCCcccCcEEEE-------EEEEEEccCce-EEE
Confidence 4678899999999986 47888888776 554
No 122
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=22.23 E-value=1.4e+03 Score=27.38 Aligned_cols=11 Identities=9% Similarity=0.187 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 005371 224 AGGLGTVLLTL 234 (699)
Q Consensus 224 ~lGv~glaIgl 234 (699)
....+|+++++
T Consensus 323 ~~~~~gv~~~~ 333 (719)
T TIGR00921 323 LGLVAGLITAY 333 (719)
T ss_pred HHHHHHHHHHH
Confidence 33333444443
No 123
>PRK09459 pspG phage shock protein G; Reviewed
Probab=22.21 E-value=1.9e+02 Score=25.55 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Q 005371 202 VWVASASLFMELLGFSTQKWLTAGGLGT 229 (699)
Q Consensus 202 v~iia~iiiL~~lGv~i~~lLa~lGv~g 229 (699)
++++++.+.|-.-|++.-+++++++++.
T Consensus 5 lFvl~F~~~LlvTGiSllgv~aAl~va~ 32 (76)
T PRK09459 5 LFVIGFFVMLLVTGISLLGIIAALGVAT 32 (76)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4555666666666777666666665543
No 124
>PF02933 CDC48_2: Cell division protein 48 (CDC48), domain 2; InterPro: IPR004201 This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the C terminus. The VAT-N domain found in AAA ATPases (IPR003959 from INTERPRO) is a substrate 185-residue recognition domain [].; GO: 0005524 ATP binding; PDB: 1QDN_B 1QCS_A 1CR5_C 3QQ8_A 3HU2_A 3HU1_E 3HU3_A 3QWZ_A 3TIW_B 3QQ7_A ....
Probab=21.87 E-value=1.6e+02 Score=24.18 Aligned_cols=30 Identities=17% Similarity=0.016 Sum_probs=18.4
Q ss_pred hccCCccCCcEEEEeecCCCeeEEEEEEec
Q 005371 250 HATRPFVLNEWIQTKIEGYEVSGTVEHVGW 279 (699)
Q Consensus 250 ~~~rPFrIGD~I~Iki~~~~~~G~VeeIgL 279 (699)
+.++||..||.|.+.+.+....-.|.++.-
T Consensus 14 l~~~pv~~Gd~i~~~~~~~~~~~~V~~~~P 43 (64)
T PF02933_consen 14 LEGRPVTKGDTIVFPFFGQALPFKVVSTEP 43 (64)
T ss_dssp HTTEEEETT-EEEEEETTEEEEEEEEEECS
T ss_pred HcCCCccCCCEEEEEeCCcEEEEEEEEEEc
Confidence 456899999999996544333444444443
No 125
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=21.80 E-value=3e+02 Score=27.98 Aligned_cols=34 Identities=12% Similarity=0.004 Sum_probs=28.5
Q ss_pred HhCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 005371 213 LLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSS 246 (699)
Q Consensus 213 ~lGv~i~~lLa~lGv~glaIglAaqd~l~Ni~aG 246 (699)
++|+++.-++.++++++.++|+.+..++.|.+=.
T Consensus 71 I~GlDP~~~~g~~t~a~g~lG~L~GP~~G~~vf~ 104 (173)
T PF08566_consen 71 IMGLDPFMVYGLATLACGALGWLVGPSLGNQVFR 104 (173)
T ss_pred ccCcCHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 5688888888888888999999999998887644
No 126
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=21.68 E-value=1.1e+03 Score=26.09 Aligned_cols=31 Identities=29% Similarity=0.286 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCc
Q 005371 109 HHVMTSYIQPLMLWTGAILICRALDPVVLPT 139 (699)
Q Consensus 109 ~~il~sl~~Pl~l~l~~i~i~~al~~l~lp~ 139 (699)
..+..++..|+.++++.+++...+..+++|.
T Consensus 160 ~~i~~al~YP~~ll~~~~~v~~~~~~~v~P~ 190 (399)
T TIGR02120 160 SKITTALIYPAVLTVVAIGVVIFLLAYVVPK 190 (399)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhccc
Confidence 3567788889877766666555554455553
No 127
>PRK10995 inner membrane protein; Provisional
Probab=21.54 E-value=6.7e+02 Score=25.91 Aligned_cols=33 Identities=27% Similarity=0.346 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q 005371 202 VWVASASLFMELLGFSTQKWLTAGGLGTVLLTL 234 (699)
Q Consensus 202 v~iia~iiiL~~lGv~i~~lLa~lGv~glaIgl 234 (699)
++.++.-.++..||++...+-.++|++-+.+|+
T Consensus 57 ~f~~~G~~il~~fgIs~~a~rIaGGilL~~igi 89 (221)
T PRK10995 57 VAFYAGQLVMSTFGISIPGLRIAGGLIVAFIGF 89 (221)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 344444567788999998888888877666654
No 128
>PRK08156 type III secretion system protein SpaS; Validated
Probab=21.36 E-value=9.4e+02 Score=27.11 Aligned_cols=24 Identities=4% Similarity=0.036 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005371 151 NFVRSLSTVLAFAYCLSSLIQQAQ 174 (699)
Q Consensus 151 ~~l~siliIl~~~~ll~~li~~i~ 174 (699)
..+..+++.+++++++..+++...
T Consensus 176 ~~~~~l~~~~~~~~lvia~~D~~~ 199 (361)
T PRK08156 176 ELLVKLVLTFLACALIVLILDFIA 199 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455556666666544
No 129
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=21.36 E-value=9.9e+02 Score=29.37 Aligned_cols=146 Identities=12% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccccCCchhhHHHHHHHHH
Q 005371 72 PGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKSKTHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLN 151 (699)
Q Consensus 72 ~al~illl~~~~l~~llr~i~r~l~~rt~~~~~~~~~~~il~sl~~Pl~l~l~~i~i~~al~~l~lp~~~~~~v~~~ll~ 151 (699)
..+.+-++++|++..++.++...-+. .-|.-+..-.-+....+.=.+.+.++++|+++ ...
T Consensus 27 ~~~~~~~~~~w~~~~~~d~~~~~r~e---~~~p~wl~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~d 87 (697)
T PF09726_consen 27 TFLYVKFLLVWALVLLADFMLEFRFE---YLWPFWLLLRSVYDSFKYQGLAFSVFFVCIAF----------------TSD 87 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHH---HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH----------------HHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHhCC----chHHHHHHHHH
Q 005371 152 FVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGF----STQKWLTAGGL 227 (699)
Q Consensus 152 ~l~siliIl~~~~ll~~li~~i~~~l~~~~~~~~~r~~~i~~i~~ii~iiv~iia~iiiL~~lGv----~i~~lLa~lGv 227 (699)
+++.+++-+-+.+++....--+..++. -+.++-+..-++-++++.+=+.+-+.-+.. ++---+++=.|
T Consensus 88 ~~~~~~~p~~~~~~~~~~~v~~~~~~~--------~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ah~i 159 (697)
T PF09726_consen 88 LICLFFIPVHWLFFAASTYVWVQYVWH--------TDRGICLPTVSLWILFVYVEASVRLKDLKSMPHLDLCRPFAAHCI 159 (697)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhh--------ccCCccHHHHHHHHHHHHHHHHHhhcccCCCcchhhcccHHHhhc
Q ss_pred H--HHHHHHHhhHHHHHHH
Q 005371 228 G--TVLLTLAGREIFTNFL 244 (699)
Q Consensus 228 ~--glaIglAaqd~l~Ni~ 244 (699)
+ .|-+||+++..+..-+
T Consensus 160 gypvv~~g~~~~~y~~~~~ 178 (697)
T PF09726_consen 160 GYPVVTLGFGFKSYVSYRM 178 (697)
T ss_pred CCceeEeeccHHHHHHHHH
No 130
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=21.32 E-value=1.2e+03 Score=28.23 Aligned_cols=15 Identities=7% Similarity=0.047 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHhCC
Q 005371 202 VWVASASLFMELLGF 216 (699)
Q Consensus 202 v~iia~iiiL~~lGv 216 (699)
+-.+.+++.|..+|-
T Consensus 547 lTTlia~lpL~~~Gg 561 (604)
T PRK12933 547 FTTMITAVVLYSIGN 561 (604)
T ss_pred HHHHHHHHHHHHHcc
Confidence 333334444445543
No 131
>cd04466 S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain. Proteins in the YloQ GTase family bind the ribosome and have GTPase activity. The precise role of this family is unknown. The protein structure is composed of three domains: an N-terminal S1 domain, a central GTPase domain, and a C-terminal zinc finger domain. This N-terminal S1 domain binds ssRNA. The central GTPase domain contains nucleotide-binding signature motifs: G1 (walker A), G3 (walker B) and G4 motifs. Experiments show that the bacterial YloQ and YjeQ proteins have low intrinsic GTPase activity. The C-terminal zinc-finger domain has structural similarity to a portion of the DNA-repair protein Rad51. This suggests a possible role for this GTPase as a regulator of translation, perhaps as a translation initiation factor. This family is classified based on the N-terminal S1 domain.
Probab=21.25 E-value=1.7e+02 Score=23.76 Aligned_cols=31 Identities=13% Similarity=0.249 Sum_probs=20.7
Q ss_pred CCccCCcEEEEeecCCCeeEEEEEEeceeeEEE
Q 005371 253 RPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIV 285 (699)
Q Consensus 253 rPFrIGD~I~Iki~~~~~~G~VeeIgL~sTT~I 285 (699)
....+||||.+...+ +..|.|++|--|. +.+
T Consensus 36 ~~~~VGD~V~~~~~~-~~~~~I~~vl~R~-s~l 66 (68)
T cd04466 36 NPPAVGDRVEFEPED-DGEGVIEEILPRK-NLL 66 (68)
T ss_pred CCCCCCcEEEEEECC-CCcEEEEEEeccc-eEE
Confidence 456899999884322 3457788887776 443
No 132
>COG4317 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.20 E-value=2.8e+02 Score=24.92 Aligned_cols=43 Identities=9% Similarity=-0.038 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 005371 204 VASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSS 246 (699)
Q Consensus 204 iia~iiiL~~lGv~i~~lLa~lGv~glaIglAaqd~l~Ni~aG 246 (699)
+++++..|-.+-...-..++..|++|+.+|--.-.....+++|
T Consensus 13 lVGiiyaLl~vrsPAPP~iAlvGllGilvGeq~~p~~~~ll~g 55 (93)
T COG4317 13 LVGIIYALLKVRSPAPPAIALVGLLGILVGEQIVPWAKRLLGG 55 (93)
T ss_pred HHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444455555556666888999999999998888888888877
No 133
>PF10842 DUF2642: Protein of unknown function (DUF2642); InterPro: IPR020139 This entry contains proteins with no known function.
Probab=21.16 E-value=3.1e+02 Score=23.52 Aligned_cols=43 Identities=9% Similarity=0.067 Sum_probs=35.6
Q ss_pred CCcEEEEeecCCCeeEEEEEEeceeeEEEEecCCcEEEEeccccc
Q 005371 257 LNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFT 301 (699)
Q Consensus 257 IGD~I~Iki~~~~~~G~VeeIgL~sTT~IRt~Dg~~ViIPNs~l~ 301 (699)
+|-+|.|.-..|.+.|++.++.--+ ..++.. |+..+|...++.
T Consensus 20 iG~~vvV~T~~g~v~G~L~~V~pDh-Ivl~~~-~~~~~IR~~~IV 62 (66)
T PF10842_consen 20 IGQRVVVQTTRGSVRGILVDVKPDH-IVLEEN-GTPFFIRIAQIV 62 (66)
T ss_pred cCCEEEEEEcCCcEEEEEEeecCCE-EEEEeC-CcEEEEEeeeEE
Confidence 6888888666688999999999998 777766 889999887764
No 134
>PF13452 MaoC_dehydrat_N: N-terminal half of MaoC dehydratase; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1S9C_K 3OML_A 3KHP_A.
Probab=21.10 E-value=1.9e+02 Score=26.59 Aligned_cols=24 Identities=13% Similarity=0.072 Sum_probs=16.6
Q ss_pred HHHHHhhhhhhccCCccCCcEEEE
Q 005371 240 FTNFLSSAMIHATRPFVLNEWIQT 263 (699)
Q Consensus 240 l~Ni~aGi~I~~~rPFrIGD~I~I 263 (699)
..-+-++--+-+-+|+++||.|.+
T Consensus 73 ~~~vh~~~~~~~h~Pl~~Gd~l~~ 96 (132)
T PF13452_consen 73 TRLVHGEQDIEFHRPLRPGDTLTA 96 (132)
T ss_dssp GGEEEEEEEEEESS--BSSEEEEE
T ss_pred hhEEecCcEEEEeCCCCCCCEEEE
Confidence 333446666888999999999997
No 135
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=21.01 E-value=1e+03 Score=26.58 Aligned_cols=117 Identities=10% Similarity=0.079 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc-------------hhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 005371 66 QALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKK-------------SKTHHVMTSYIQPLMLWTGAILICRAL 132 (699)
Q Consensus 66 l~l~lL~al~illl~~~~l~~llr~i~r~l~~rt~~~~~~-------------~~~~~il~sl~~Pl~l~l~~i~i~~al 132 (699)
..+..++.+.++++++.++..++.....+-.+...-.|++ .....++.++.+-+.+.+++..+....
T Consensus 81 ~~~~~~~p~~~~~~~~~i~~~~~q~G~~fs~k~l~Pk~~rlNPi~G~KriFS~~~l~el~KsllK~~~i~~v~~~~~~~~ 160 (347)
T TIGR00328 81 EVLLLLLPIFVLLLVVGVLSNIAQFGFLFTTKPLKPKFSKINPIKGLKRLFSLQSLVELLKSLLKVFLVSFVAYFVLRNS 160 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCcccccccCCCChhhcCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred c--cccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 005371 133 D--PVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTD 182 (699)
Q Consensus 133 ~--~l~lp~~~~~~v~~~ll~~l~siliIl~~~~ll~~li~~i~~~l~~~~~ 182 (699)
. .+.+...........+...+..++..+++++++.-+++....++.-..+
T Consensus 161 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~ 212 (347)
T TIGR00328 161 LGELLSLSLYSLVQAITNFLDIAKSLLILVLLLLLVIAVFDYFFQRWQYIKS 212 (347)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 136
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=20.88 E-value=1.1e+03 Score=28.11 Aligned_cols=134 Identities=11% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhHHHH
Q 005371 115 YIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFA 194 (699)
Q Consensus 115 l~~Pl~l~l~~i~i~~al~~l~lp~~~~~~v~~~ll~~l~siliIl~~~~ll~~li~~i~~~l~~~~~~~~~r~~~i~~i 194 (699)
+.....++-++-++........+.......+...+..-+...++.+++++++.-++.....++..+....-.....-.++
T Consensus 1 ~l~i~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l 80 (559)
T COG4988 1 WLVISALLAVLSGIAIIAQAALLADILTKLIEGQLFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVL 80 (559)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH------------------------------------HHHHHHHHHHHHHhCCchHHHHHHHHHH------HHHH
Q 005371 195 GKAVYS------------------------------------AVWVASASLFMELLGFSTQKWLTAGGLG------TVLL 232 (699)
Q Consensus 195 ~~ii~i------------------------------------iv~iia~iiiL~~lGv~i~~lLa~lGv~------glaI 232 (699)
+++.+. -..++.++++..++.++..+-+..++.+ -+++
T Consensus 81 ~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilv 160 (559)
T COG4988 81 DKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILV 160 (559)
T ss_pred HHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhHHHHHHHhhhh
Q 005371 233 TLAGREIFTNFLSSAM 248 (699)
Q Consensus 233 glAaqd~l~Ni~aGi~ 248 (699)
|.++++....-++.+.
T Consensus 161 g~~a~~~s~~~~~~~~ 176 (559)
T COG4988 161 GLAAKDASEKQFSALA 176 (559)
T ss_pred HHHHhHHHHHHHHHHH
No 137
>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The KOW (Kyprides, Ouzounis, Woese) motif is found in a variety of ribosomal proteins and the bacterial transcription antitermination proteins NusG []. ; PDB: 3BBO_W 2HGJ_X 2HGQ_X 2HGU_X 1NPP_B 1M1G_D 1NPR_A 2XHC_A 2KVQ_G 2JVV_A ....
Probab=20.81 E-value=1.6e+02 Score=21.13 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=16.5
Q ss_pred CCcEEEEeecC--CCeeEEEEEEece
Q 005371 257 LNEWIQTKIEG--YEVSGTVEHVGWW 280 (699)
Q Consensus 257 IGD~I~Iki~~--~~~~G~VeeIgL~ 280 (699)
+||+|.| +.| -+..|.|.+|.-.
T Consensus 1 ~Gd~V~V-~~G~~~G~~G~I~~i~~~ 25 (32)
T PF00467_consen 1 VGDTVKV-ISGPFKGKIGKIVEIDRS 25 (32)
T ss_dssp TTSEEEE-SSSTTTTEEEEEEEEETT
T ss_pred CCCEEEE-eEcCCCCceEEEEEEECC
Confidence 5999998 222 4678899888754
No 138
>PF08611 DUF1774: Fungal protein of unknown function (DUF1774); InterPro: IPR013920 This is a fungal protein of unknown function.
Probab=20.75 E-value=2e+02 Score=26.51 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=26.5
Q ss_pred HhCCchHHHHHHHHHHHHHH-HHHhhHHHHHHHhhhhhh
Q 005371 213 LLGFSTQKWLTAGGLGTVLL-TLAGREIFTNFLSSAMIH 250 (699)
Q Consensus 213 ~lGv~i~~lLa~lGv~glaI-glAaqd~l~Ni~aGi~I~ 250 (699)
.+|++.+-+.+++|+.=+.. .+++|=++.=.++|++..
T Consensus 26 ~~GfslS~L~~slgv~Q~~~kvialQWIFAFvI~avlfv 64 (97)
T PF08611_consen 26 AMGFSLSYLTASLGVGQFFIKVIALQWIFAFVIAAVLFV 64 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777775544 478888888888776543
No 139
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=20.72 E-value=1.5e+02 Score=37.61 Aligned_cols=47 Identities=23% Similarity=0.252 Sum_probs=35.7
Q ss_pred CCccCCcEEEEeecC------CCeeEEEEEEeceeeEEEEecCCcEEEEecccc
Q 005371 253 RPFVLNEWIQTKIEG------YEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKF 300 (699)
Q Consensus 253 rPFrIGD~I~Iki~~------~~~~G~VeeIgL~sTT~IRt~Dg~~ViIPNs~l 300 (699)
+.|++||+|.+.-++ +|..|+|++|.-.. ..++..||+.|.++...+
T Consensus 599 r~~~vGDrVm~~rNd~~lgV~NGd~GtV~~I~~~~-i~V~~d~gr~V~~~~~~~ 651 (988)
T PRK13889 599 RSFASGDRVMFLQNERGLGVKNGTLGTIEQVSAQS-MSVRLDDGRSVAFDLKDY 651 (988)
T ss_pred ccccCCCEEEEeecCCcCCEeCCCeEEEEEecCCe-EEEEECCCeEEEecHHHc
Confidence 579999999984221 45689999998776 778877888888876543
No 140
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=20.67 E-value=1.3e+03 Score=26.62 Aligned_cols=12 Identities=0% Similarity=0.229 Sum_probs=7.1
Q ss_pred HHHhhHHHHHHH
Q 005371 233 TLAGREIFTNFL 244 (699)
Q Consensus 233 glAaqd~l~Ni~ 244 (699)
+...-|.++-++
T Consensus 177 av~~Td~iqg~i 188 (493)
T COG0591 177 AVVWTDFIQGLI 188 (493)
T ss_pred HHHHHHHHHHHH
Confidence 455666666654
No 141
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=20.52 E-value=8.2e+02 Score=29.62 Aligned_cols=16 Identities=6% Similarity=-0.033 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 005371 220 KWLTAGGLGTVLLTLA 235 (699)
Q Consensus 220 ~lLa~lGv~glaIglA 235 (699)
.++....++-+++|.|
T Consensus 510 ~F~~i~~v~l~aF~~~ 525 (743)
T TIGR00870 510 RFLFIYAVVLFGFACG 525 (743)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333433333333
No 142
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=20.52 E-value=8e+02 Score=23.93 Aligned_cols=18 Identities=6% Similarity=-0.062 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005371 193 FAGKAVYSAVWVASASLF 210 (699)
Q Consensus 193 ~i~~ii~iiv~iia~iii 210 (699)
.+.++..++++++++.++
T Consensus 171 ~i~~~~g~~li~~av~l~ 188 (191)
T PF01810_consen 171 WINRISGLLLIGFAVYLL 188 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455556666655555544
No 143
>PF03699 UPF0182: Uncharacterised protein family (UPF0182); InterPro: IPR005372 This family contains uncharacterised integral membrane proteins.; GO: 0016021 integral to membrane
Probab=20.44 E-value=1.7e+03 Score=27.76 Aligned_cols=10 Identities=10% Similarity=0.258 Sum_probs=5.4
Q ss_pred HHhhcCChHH
Q 005371 58 YNALQCSPQA 67 (699)
Q Consensus 58 ~~~l~~~pl~ 67 (699)
|..++....+
T Consensus 33 F~~lg~~~Vf 42 (774)
T PF03699_consen 33 FSSLGYTSVF 42 (774)
T ss_pred HHhcCcHHHH
Confidence 4566655544
No 144
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=20.22 E-value=9.2e+02 Score=24.49 Aligned_cols=11 Identities=18% Similarity=0.120 Sum_probs=4.6
Q ss_pred CCccccccccC
Q 005371 29 PQDFRSFNLSG 39 (699)
Q Consensus 29 ~~~~~~~~ll~ 39 (699)
++|..|..++.
T Consensus 43 k~G~tA~~lfG 53 (206)
T PF06570_consen 43 KKGKTARQLFG 53 (206)
T ss_pred hCCCcHHHHcC
Confidence 33444444433
No 145
>COG1615 Uncharacterized conserved protein [Function unknown]
Probab=20.21 E-value=1.7e+03 Score=27.70 Aligned_cols=12 Identities=8% Similarity=0.158 Sum_probs=8.6
Q ss_pred ccCCccCCcEEEE
Q 005371 251 ATRPFVLNEWIQT 263 (699)
Q Consensus 251 ~~rPFrIGD~I~I 263 (699)
....|.+ |+|+.
T Consensus 309 TR~Ay~l-d~v~~ 320 (885)
T COG1615 309 TREAYGL-DDVTY 320 (885)
T ss_pred HHHHhCC-ceecc
Confidence 3357888 88886
No 146
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=20.20 E-value=1.6e+03 Score=27.14 Aligned_cols=11 Identities=18% Similarity=0.368 Sum_probs=7.7
Q ss_pred ccchhhheeee
Q 005371 629 ALEENIVLGVA 639 (699)
Q Consensus 629 ~~~~~~~~~~~ 639 (699)
.++|||.+|..
T Consensus 530 tv~eni~~~~~ 540 (659)
T TIGR00954 530 TLRDQIIYPDS 540 (659)
T ss_pred CHHHHHhcCCC
Confidence 67888877643
No 147
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=20.09 E-value=1.6e+03 Score=27.15 Aligned_cols=13 Identities=8% Similarity=-0.100 Sum_probs=9.0
Q ss_pred HHHHHHHHHCCCc
Q 005371 393 LDLLRVISHHRAR 405 (699)
Q Consensus 393 ~~Il~~~~e~GIe 405 (699)
..+.+.+++++++
T Consensus 397 ~~l~~~l~~~~i~ 409 (639)
T PRK15083 397 GVLRKKVQDAGLS 409 (639)
T ss_pred HHHHHHHHHcCCC
Confidence 3667777877765
No 148
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=20.07 E-value=3e+02 Score=26.87 Aligned_cols=47 Identities=11% Similarity=-0.004 Sum_probs=28.3
Q ss_pred CCccCCcEEEEeecC--CCeeEEEEEEecee-eEEEEec-CCcE--EEEecccc
Q 005371 253 RPFVLNEWIQTKIEG--YEVSGTVEHVGWWS-PTIVRGE-DREA--VHIPNHKF 300 (699)
Q Consensus 253 rPFrIGD~I~Iki~~--~~~~G~VeeIgL~s-TT~IRt~-Dg~~--ViIPNs~l 300 (699)
..|++||+|+|. +| .+..|.|.+++-.. ..++.-. -... +.||++.+
T Consensus 93 ~~~~~G~~V~I~-~Gpf~g~~g~V~~vd~~k~~v~v~ll~~~~~~pv~v~~~~~ 145 (153)
T PRK08559 93 EGIKEGDIVELI-AGPFKGEKARVVRVDESKEEVTVELLEAAVPIPVTVRGDQV 145 (153)
T ss_pred cCCCCCCEEEEe-ccCCCCceEEEEEEcCCCCEEEEEEECCcceeeEEEeccEE
Confidence 469999999994 22 35678899986322 0222222 2333 66776665
No 149
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=20.02 E-value=2.4e+02 Score=25.18 Aligned_cols=19 Identities=11% Similarity=0.176 Sum_probs=15.7
Q ss_pred hhhhhhccCCccCCcEEEE
Q 005371 245 SSAMIHATRPFVLNEWIQT 263 (699)
Q Consensus 245 aGi~I~~~rPFrIGD~I~I 263 (699)
+..-+-+.+|+.+||.|++
T Consensus 71 ~~~~~~f~~Pv~~Gd~l~~ 89 (127)
T cd03441 71 GSQSVRFLAPVFPGDTLRV 89 (127)
T ss_pred EEeEEEEeCCcCCCCEEEE
Confidence 3455678999999999997
Done!