Query 005371
Match_columns 699
No_of_seqs 309 out of 2174
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 23:27:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005371.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005371hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vv5_A MSCS, small-conductance 100.0 9.4E-43 3.2E-47 365.4 33.1 243 157-416 35-278 (286)
2 3udc_A Small-conductance mecha 100.0 1.5E-40 5.1E-45 348.5 38.0 215 189-417 63-278 (285)
3 3udc_A Small-conductance mecha 60.6 1.5E+02 0.0051 30.1 14.8 30 332-362 251-280 (285)
4 2e6z_A Transcription elongatio 56.1 13 0.00044 29.5 4.3 46 253-300 6-56 (59)
5 1nz9_A Transcription antitermi 53.6 34 0.0012 26.6 6.4 26 253-279 3-30 (58)
6 2vv5_A MSCS, small-conductance 47.2 2.4E+02 0.0082 28.6 13.5 13 332-344 252-264 (286)
7 2do3_A Transcription elongatio 43.9 58 0.002 27.0 6.5 43 251-294 14-58 (69)
8 3cnr_A Type IV fimbriae assemb 31.5 31 0.0011 31.1 3.3 20 245-264 32-51 (117)
9 3h0l_B Aspartyl/glutamyl-tRNA( 30.2 3E+02 0.01 30.5 11.5 151 241-407 86-245 (478)
10 3ip4_B Aspartyl/glutamyl-tRNA( 27.9 3.6E+02 0.012 30.0 11.6 153 241-411 84-246 (483)
11 3exz_A MAOC-like dehydratase; 27.2 71 0.0024 29.2 5.1 16 248-263 85-100 (154)
12 4a2n_B Isoprenylcysteine carbo 23.5 2.7E+02 0.0092 26.8 8.7 20 218-237 73-92 (194)
13 1q6w_A Monoamine oxidase regul 22.5 1.8E+02 0.0062 26.3 6.9 20 244-263 96-115 (161)
14 4b6m_A Tubulin-specific chaper 22.0 80 0.0027 27.0 3.9 25 253-279 4-28 (84)
15 4hpv_A S-adenosylmethionine sy 22.0 4.8E+02 0.016 28.4 10.8 79 318-402 164-251 (407)
16 1mww_A Hypothetical protein HI 21.3 3.2E+02 0.011 23.9 8.1 94 325-429 10-113 (128)
17 2cp0_A Clipr-59 protein, clipr 20.5 54 0.0018 28.7 2.6 30 248-280 10-39 (95)
No 1
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=100.00 E-value=9.4e-43 Score=365.43 Aligned_cols=243 Identities=17% Similarity=0.240 Sum_probs=219.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHh
Q 005371 157 STVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAG 236 (699)
Q Consensus 157 liIl~~~~ll~~li~~i~~~l~~~~~~~~~r~~~i~~i~~ii~iiv~iia~iiiL~~lGv~i~~lLa~lGv~glaIglAa 236 (699)
+++++++|++.+++..+.+.+.++.. .+.....++.+++++++|+++++++|..+|++++++++++|++|+++|||+
T Consensus 35 ~~i~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~i~~i~~~~~l~~~gi~~~~l~a~~g~~g~aig~a~ 111 (286)
T 2vv5_A 35 LAIIIVGLIIARMISNAVNRLMISRK---IDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGLAL 111 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 34556688888888776655554432 234456789999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhhhhccCCccCCcEEEEeecCCCeeEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEeccCCCceEE
Q 005371 237 REIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRI 316 (699)
Q Consensus 237 qd~l~Ni~aGi~I~~~rPFrIGD~I~Iki~~~~~~G~VeeIgL~sTT~IRt~Dg~~ViIPNs~l~s~~I~N~Sr~~~~ri 316 (699)
|++++|++||++|+++|||++||||++ ++..|+|++|+|++ |++|++||+.++|||+.+.++.|+|||+.+.+|+
T Consensus 112 q~~l~n~~sGi~i~~~~pf~vGD~I~i----~g~~G~V~~I~l~~-T~i~t~dg~~v~IPNs~l~~~~i~N~s~~~~~r~ 186 (286)
T 2vv5_A 112 QGSLSNLAAGVLLVMFRPFRAGEYVDL----GGVAGTVLSVQIFS-TTMRTADGKIIVIPNGKIIAGNIINFSREPVRRN 186 (286)
T ss_dssp THHHHHHHHHHHHHTTCSSCTTCEEES----SSCEEEEEEECSSE-EEEECTTSCEEEEEHHHHHTSCEEESSSSSEEEE
T ss_pred HHHHHHHHhhhHHHhcCCccCCCEEEE----CCEEEEEEEEEeEE-EEEEeCCCCEEEechHHHhhCceEECCCCCcEEE
Confidence 999999999999999999999999999 68999999999999 9999999999999999999999999999988899
Q ss_pred EEEEEecc-CCHHHHHHHHHHHHHHHHhCCCccccccceEEEEEeeCCCCceEEEEEEEEEecCChhhHHHHHHHHHHHH
Q 005371 317 KTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDL 395 (699)
Q Consensus 317 ~i~l~I~y-td~ekv~~l~~~i~e~L~~~p~v~~~~~~p~V~v~~~~~~d~sv~i~V~~~v~~~~~~~~~~vr~eL~~~I 395 (699)
.+.++++| +|++++++ .+.++++++|.+..++ .|.|++.++++ ++++++++||+++. +++.+|+++++++
T Consensus 187 ~~~v~v~y~~d~~~v~~---~l~~~~~~~~~vl~~p-~p~v~v~~~~~--~~i~~~v~~~~~~~---~~~~~~~~l~~~i 257 (286)
T 2vv5_A 187 EFIIGVAYDSDIDQVKQ---ILTNIIQSEDRILKDR-EMTVRLNELGA--SSINFVVRVWSNSG---DLQNVYWDVLERI 257 (286)
T ss_dssp EEEEEECTTSCHHHHHH---HHHHHHHHCTTBCTTS-CEEEEEEEECS--SSEEEEEEEEEETT---THHHHHHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHH---HHHHHHHhCcccccCC-CCEEEEEEecC--CeEEEEEEEEEccc---hHHHHHHHHHHHH
Confidence 99999999 99999988 5778889999998877 78999999985 79999999999985 4689999999999
Q ss_pred HHHHHHCCCccCCCcEEEEEe
Q 005371 396 LRVISHHRARLATPIRTVQKI 416 (699)
Q Consensus 396 l~~~~e~GIe~a~P~qtv~~~ 416 (699)
+++|+++||++|||+|++++.
T Consensus 258 ~~~~~~~gI~ip~P~~~v~~~ 278 (286)
T 2vv5_A 258 KREFDAAGISFPYPQMDVNFK 278 (286)
T ss_dssp HHHHHHHTCCCCCCEEEEEEE
T ss_pred HHHHHHCCCcCCCCceEEEec
Confidence 999999999999999999864
No 2
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=100.00 E-value=1.5e-40 Score=348.49 Aligned_cols=215 Identities=18% Similarity=0.268 Sum_probs=191.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhccCCccCCcEEEEeecCC
Q 005371 189 MGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGY 268 (699)
Q Consensus 189 ~~i~~i~~ii~iiv~iia~iiiL~~lGv~i~~lLa~lGv~glaIglAaqd~l~Ni~aGi~I~~~rPFrIGD~I~Iki~~~ 268 (699)
....++++++++++|+++++++|..+|++++++++++|++|+++|||+|++++|++||++|+++|||++||||++ +
T Consensus 63 tl~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~l~a~~g~~g~aig~a~q~~l~n~~~Gi~i~~~~pf~vGD~I~i----~ 138 (285)
T 3udc_A 63 TLTSLTKNAVRYIIYFLAGASILKLFNIDMTSLLAVAGIGSLAIGFGAQNLVKDMISGFFIIFEDQFSVGDYVTI----N 138 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTSCCTTCEEEE----T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCCCEEEE----C
Confidence 457789999999999999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred CeeEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEeccCCCceEEEEEEEecc-CCHHHHHHHHHHHHHHHHhCCCc
Q 005371 269 EVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQV 347 (699)
Q Consensus 269 ~~~G~VeeIgL~sTT~IRt~Dg~~ViIPNs~l~s~~I~N~Sr~~~~ri~i~l~I~y-td~ekv~~l~~~i~e~L~~~p~v 347 (699)
+++|+|++|+|++ |++|++||+.++|||+.+ ..+.|||+.. .+..+.++++| +|.++++++++++.+.+.+.+..
T Consensus 139 ~~~G~V~~I~l~~-T~i~t~d~~~v~iPN~~l--~~i~N~s~~~-~~~~~~v~v~~~~d~~~v~~~l~~i~~~~~~~~~~ 214 (285)
T 3udc_A 139 GISGTVEEIGLRV-TKIRGFSDGLHIIPNGEI--KMVTNLTKDS-MMAVVNIAFPIDEDVDKIIEGLQEICEEVKKSRDD 214 (285)
T ss_dssp TEEEEEEEECSSE-EEEEETTTEEEEEEGGGC--SCEEECSSSC-EEEEEEEEEETTSCHHHHHHHHHHHHHHHHHHCSS
T ss_pred CEEEEEEEeeeeE-EEEecCCCCEEEeccccc--ccccccCCCC-ceEEEEEeeecCCCHHHHHHHHHHHHHHHHhcccc
Confidence 8999999999999 999999999999999999 4699999854 55668999999 99999999877766655444433
Q ss_pred cccccceEEEEEeeCCCCceEEEEEEEEEecCChhhHHHHHHHHHHHHHHHHHHCCCccCCCcEEEEEee
Q 005371 348 EQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIF 417 (699)
Q Consensus 348 ~~~~~~p~V~v~~~~~~d~sv~i~V~~~v~~~~~~~~~~vr~eL~~~Il~~~~e~GIe~a~P~qtv~~~~ 417 (699)
..++ ++.+.+.++++ ++++++++||+++.+ ++.++++++++|+++|+++||++|||+|+||+..
T Consensus 215 ~~~~-~~~v~~~~~~~--s~i~~~v~~~~~~~~---~~~~~~~l~~~I~~~f~~~gI~ipfP~~~v~~~~ 278 (285)
T 3udc_A 215 LIEG-PTVLGITDMQD--SKLVIMVYAKTQPMQ---KWAVERDIRYRVKKMFDQKNISFPYPQMDVNFKR 278 (285)
T ss_dssp BSSC-CEEEEEEEEET--TEEEEEEEEEESTTC---HHHHHHHHHHHHHHHHHHTTCCCCCCCCEEEEEE
T ss_pred cccC-cccccccccCC--CEEEEEEEEEECcch---HHHHHHHHHHHHHHHHHHCCCcCcCCCEEEEeCc
Confidence 3333 46788999985 799999999998654 5789999999999999999999999999999654
No 3
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=60.59 E-value=1.5e+02 Score=30.15 Aligned_cols=30 Identities=10% Similarity=0.100 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhCCCccccccceEEEEEeeC
Q 005371 332 SIVADMRKVLAKNPQVEQQRLHRRVFLDNIN 362 (699)
Q Consensus 332 ~l~~~i~e~L~~~p~v~~~~~~p~V~v~~~~ 362 (699)
++...+.+.++++.-...-| +..+++.+..
T Consensus 251 ~l~~~I~~~f~~~gI~ipfP-~~~v~~~~~~ 280 (285)
T 3udc_A 251 DIRYRVKKMFDQKNISFPYP-QMDVNFKRVK 280 (285)
T ss_dssp HHHHHHHHHHHHTTCCCCCC-CCEEEEEEC-
T ss_pred HHHHHHHHHHHHCCCcCcCC-CEEEEeCcCC
Confidence 44556666666653322222 3446665543
No 4
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.06 E-value=13 Score=29.54 Aligned_cols=46 Identities=13% Similarity=0.255 Sum_probs=28.7
Q ss_pred CCccCCcEEEEeecC--CCeeEEEEEEeceeeEEEEe---cCCcEEEEecccc
Q 005371 253 RPFVLNEWIQTKIEG--YEVSGTVEHVGWWSPTIVRG---EDREAVHIPNHKF 300 (699)
Q Consensus 253 rPFrIGD~I~Iki~~--~~~~G~VeeIgL~sTT~IRt---~Dg~~ViIPNs~l 300 (699)
-.|.+||.|+|. +| .+..|.|+++.--. .++.- .=.+.+-+|++++
T Consensus 6 ~~f~~GD~V~V~-~Gpf~g~~G~V~evd~e~-v~V~v~~fg~~tpvel~~~qv 56 (59)
T 2e6z_A 6 SGFQPGDNVEVC-EGELINLQGKILSVDGNK-ITIMPKHEDLKDMLEFPAQEL 56 (59)
T ss_dssp SSCCTTSEEEEC-SSTTTTCEEEECCCBTTE-EEEEECCSSCCSCEEEETTTE
T ss_pred ccCCCCCEEEEe-ecCCCCCEEEEEEEeCCE-EEEEEEecCCCceEEEcHHHE
Confidence 469999999993 32 45789999988643 33332 1123455555443
No 5
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=53.56 E-value=34 Score=26.57 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=20.7
Q ss_pred CCccCCcEEEEeecC--CCeeEEEEEEec
Q 005371 253 RPFVLNEWIQTKIEG--YEVSGTVEHVGW 279 (699)
Q Consensus 253 rPFrIGD~I~Iki~~--~~~~G~VeeIgL 279 (699)
-+|++||.|+|. +| .+..|.|++++.
T Consensus 3 ~~~~~Gd~V~V~-~Gpf~g~~g~v~~v~~ 30 (58)
T 1nz9_A 3 VAFREGDQVRVV-SGPFADFTGTVTEINP 30 (58)
T ss_dssp CSCCTTCEEEEC-SGGGTTCEEEEEEEET
T ss_pred cccCCCCEEEEe-ecCCCCcEEEEEEEcC
Confidence 378999999993 33 368999999976
No 6
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=47.24 E-value=2.4e+02 Score=28.64 Aligned_cols=13 Identities=0% Similarity=0.312 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHhC
Q 005371 332 SIVADMRKVLAKN 344 (699)
Q Consensus 332 ~l~~~i~e~L~~~ 344 (699)
++.+.+.+.++++
T Consensus 252 ~l~~~i~~~~~~~ 264 (286)
T 2vv5_A 252 DVLERIKREFDAA 264 (286)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC
Confidence 3445566666654
No 7
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=43.89 E-value=58 Score=26.96 Aligned_cols=43 Identities=12% Similarity=0.131 Sum_probs=27.2
Q ss_pred ccCCccCCcEEEEeecC--CCeeEEEEEEeceeeEEEEecCCcEEE
Q 005371 251 ATRPFVLNEWIQTKIEG--YEVSGTVEHVGWWSPTIVRGEDREAVH 294 (699)
Q Consensus 251 ~~rPFrIGD~I~Iki~~--~~~~G~VeeIgL~sTT~IRt~Dg~~Vi 294 (699)
+.+-|++||.|+| +.| .+..|.|..|.=-..|.+-+..++-+.
T Consensus 14 LrK~F~~GDHVkV-i~G~~~getGlVV~v~~d~v~v~SD~t~~Ei~ 58 (69)
T 2do3_A 14 LRKYFKMGDHVKV-IAGRFEGDTGLIVRVEENFVILFSDLTMHELK 58 (69)
T ss_dssp CCSSCCTTCEEEE-SSSTTTTCEEEEEEECSSCEEEEESSSCSEEE
T ss_pred ceeeccCCCeEEE-eccEEcCceEEEEEEeCCEEEEEeCCCCCEEE
Confidence 3478999999999 443 456788888864442444444443333
No 8
>3cnr_A Type IV fimbriae assembly protein; PILZ, xanthomonas citri, type IV pilus assembly, unknown function; HET: MSE; 1.90A {Xanthomonas axonopodis PV} PDB: 3dsg_A
Probab=31.54 E-value=31 Score=31.13 Aligned_cols=20 Identities=5% Similarity=0.214 Sum_probs=18.1
Q ss_pred hhhhhhccCCccCCcEEEEe
Q 005371 245 SSAMIHATRPFVLNEWIQTK 264 (699)
Q Consensus 245 aGi~I~~~rPFrIGD~I~Ik 264 (699)
+|++|-.++||.+||.|.+.
T Consensus 32 GGlFI~T~~~~~~G~~V~l~ 51 (117)
T 3cnr_A 32 GGIFVPTPKRYMLGDEVFLL 51 (117)
T ss_dssp CEEEEECCSCCCTTCEEEEE
T ss_pred CeEEEeeCCccCCCCEEEEE
Confidence 67999999999999999884
No 9
>3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B*
Probab=30.17 E-value=3e+02 Score=30.54 Aligned_cols=151 Identities=10% Similarity=0.156 Sum_probs=94.8
Q ss_pred HHHHhhhhhh-ccCCccCCcEEEEeecCCCeeEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEeccCCCceEEEEE
Q 005371 241 TNFLSSAMIH-ATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTH 319 (699)
Q Consensus 241 ~Ni~aGi~I~-~~rPFrIGD~I~Iki~~~~~~G~VeeIgL~sTT~IRt~Dg~~ViIPNs~l~s~~I~N~Sr~~~~ri~i~ 319 (699)
.++=.|.+|. ++.|+-.|=+|.+..++ |....|++.. ..+..+.|+.++-. +.....|.|.+---+.+.
T Consensus 86 pDlPkgYQITQ~~~Pia~~G~l~i~~~~----g~~k~I~I~r-ihlEEDagK~~h~~-----~~slvD~NRaGvPLiEIV 155 (478)
T 3h0l_B 86 PDLPKGYQISQYEKPLATNGWVELNLPN----GEKKKVRIRR-LHIEEDAGKNIHEG-----DKTLVDLNRAGTPLMEIV 155 (478)
T ss_dssp TTCTTSEEEEESSSCSEEEEEEEEECTT----SCEEEEEEEE-EEEEECCCEEEEET-----TEEEEECSSTTCEEEEEE
T ss_pred CCCCcccchhccccCeecCCEEEEEecC----CceEEEeeEE-EEecccccccccCC-----CceEEecCCCCCceEEEe
Confidence 3445688885 78899999999984332 4467899998 99999999999872 346778888876666665
Q ss_pred EEeccCCHHHHHHHHHHHHHHHHhCCCcccccc--ceEEE----EEeeCCCCceEEEEEEEEEecCChhhHHHHHHHHHH
Q 005371 320 LAISHLDVHKINSIVADMRKVLAKNPQVEQQRL--HRRVF----LDNINPENQALLILVSCFVKTSHHEEYLCVKEAILL 393 (699)
Q Consensus 320 l~I~ytd~ekv~~l~~~i~e~L~~~p~v~~~~~--~p~V~----v~~~~~~d~sv~i~V~~~v~~~~~~~~~~vr~eL~~ 393 (699)
-.=+..+++++++.++.++..|+...-....+- .-++- +...+... +--++-+++- ..+..++..|..
T Consensus 156 TePd~~s~eeA~a~~~~L~~ilr~lgvsd~~meeGslR~DvNVSvr~~g~~~----~GtRvEiKNl--nS~~~v~~AI~y 229 (478)
T 3h0l_B 156 TEPDIRTPEEARLFLEKLRNIMRYAGVSKADMEKGQLRCDINVSIRPKGSKE----FGTRVEIKNV--NSFRFVQKALEY 229 (478)
T ss_dssp ECTTBCSHHHHHHHHHHHHHHHHHHTSCCCCGGGTSEEEEEEEEEEETTCCS----CCCCEEEECC--CSHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHhCcCccccccCceEeeeeEEeccCCCCC----CcceEEEecc--ccHHHHHHHHHH
Confidence 555567899999999888888876432221110 11111 11111100 1123444443 345667777777
Q ss_pred HHHHHHH--HCCCccC
Q 005371 394 DLLRVIS--HHRARLA 407 (699)
Q Consensus 394 ~Il~~~~--e~GIe~a 407 (699)
++.+..+ +.|-++.
T Consensus 230 Ei~RQ~~~le~Gg~V~ 245 (478)
T 3h0l_B 230 EIERQINVVEEGGEVV 245 (478)
T ss_dssp HHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHcCCCee
Confidence 7777553 3555543
No 10
>3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_B 2dqn_B* 2g5h_B 2g5i_B* 2f2a_B
Probab=27.87 E-value=3.6e+02 Score=29.98 Aligned_cols=153 Identities=11% Similarity=0.119 Sum_probs=97.1
Q ss_pred HHHHhhhhhh-ccCCccCCcEEEEeecCCCeeEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEeccCCCceEEEEE
Q 005371 241 TNFLSSAMIH-ATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTH 319 (699)
Q Consensus 241 ~Ni~aGi~I~-~~rPFrIGD~I~Iki~~~~~~G~VeeIgL~sTT~IRt~Dg~~ViIPNs~l~s~~I~N~Sr~~~~ri~i~ 319 (699)
.++=.|.+|. ++.|+-.|=+|.+..+ |.-..|++.. ..+..+.|+.++-.. .....|.|.+---+.+.
T Consensus 84 pDlPkgYQITQ~~~Pia~~G~l~i~~~-----~~~k~I~I~r-ihlEEDagK~~h~~~-----~slvD~NRaGvPLiEIV 152 (483)
T 3ip4_B 84 PDNPKAYQISQFDQPIGENGYIDIEVD-----GETKRIGITR-LHMEEDAGKSTHKGE-----YSLVDLNRQGTPLIEIV 152 (483)
T ss_dssp TTBTTSEEEECSSSCSEEEEEEEECSS-----SSCEEEEEEE-EEEEECCCEEEEETT-----EEEEECTTTTCEEEEEE
T ss_pred CCCCcCccccccccCeecCCEEEEEec-----CceEEEeEEE-EeecchhhhhccCCC-----ceEEecCCCCCceEEEe
Confidence 3445688885 7889999999998432 2236899998 999999999998643 46778898877666665
Q ss_pred EEeccCCHHHHHHHHHHHHHHHHhCC---CccccccceEE--E--EEeeCCCCceEEEEEEEEEecCChhhHHHHHHHHH
Q 005371 320 LAISHLDVHKINSIVADMRKVLAKNP---QVEQQRLHRRV--F--LDNINPENQALLILVSCFVKTSHHEEYLCVKEAIL 392 (699)
Q Consensus 320 l~I~ytd~ekv~~l~~~i~e~L~~~p---~v~~~~~~p~V--~--v~~~~~~d~sv~i~V~~~v~~~~~~~~~~vr~eL~ 392 (699)
-.=+..+++++++.++.++..|+... ....+. .-++ + +...+.. .+-.++-+++- ..+..++..|.
T Consensus 153 TePd~~s~eeA~a~~~~L~~ilr~lgvsd~~meeG-slR~DvNVSvr~~g~~----~~GtRvEiKNl--nS~~~v~~AI~ 225 (483)
T 3ip4_B 153 SEPDIRSPKEAYAYLEKLRSIIQYTGVSDVKMEEG-SLRCDANISLRPYGQE----KFGTKAELKNL--NSFNYVRKGLE 225 (483)
T ss_dssp ECSCBCSHHHHHHHHHHHHHHHHHHTSCCCCGGGT-SEEEEEEEEEEETTSC----CCCCEEEEECC--CSHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcccC-ceEeeeeEeecCCCCC----CCcceEEEecc--cCHHHHHHHHH
Confidence 55556789999999999888887643 222111 1111 1 1111110 02223444443 34566777777
Q ss_pred HHHHHHHH--HCCCccCCCcE
Q 005371 393 LDLLRVIS--HHRARLATPIR 411 (699)
Q Consensus 393 ~~Il~~~~--e~GIe~a~P~q 411 (699)
.++.+..+ +.|-++.-++|
T Consensus 226 yEi~RQ~~~le~Gg~v~qETR 246 (483)
T 3ip4_B 226 YEEKRQEEELLNGGEIGQETR 246 (483)
T ss_dssp HHHHHHHHHHHHTCCCCEEEE
T ss_pred HHHHHHHHHHHcCCcEeccce
Confidence 77777654 45655544444
No 11
>3exz_A MAOC-like dehydratase; Q2RSA1_rhort, NESG, RRR103A, structur genomics, PSI-2, protein structure initiative; 2.30A {Rhodospirillum rubrum}
Probab=27.21 E-value=71 Score=29.21 Aligned_cols=16 Identities=6% Similarity=0.030 Sum_probs=14.0
Q ss_pred hhhccCCccCCcEEEE
Q 005371 248 MIHATRPFVLNEWIQT 263 (699)
Q Consensus 248 ~I~~~rPFrIGD~I~I 263 (699)
-+-|.+|..+||.|.+
T Consensus 85 ~~rF~~PV~~GD~L~~ 100 (154)
T 3exz_A 85 ELSWPNPTRPGDELHV 100 (154)
T ss_dssp EEECSSCCCTTCEEEE
T ss_pred EEEEcCCCCCCCEEEE
Confidence 4678899999999987
No 12
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=23.55 E-value=2.7e+02 Score=26.77 Aligned_cols=20 Identities=10% Similarity=-0.096 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHHHHhh
Q 005371 218 TQKWLTAGGLGTVLLTLAGR 237 (699)
Q Consensus 218 i~~lLa~lGv~glaIglAaq 237 (699)
....+..+|++-.++|+++.
T Consensus 73 ~p~~~~~~G~~l~l~G~~l~ 92 (194)
T 4a2n_B 73 LPDSIRLFALIVTFLNIGLF 92 (194)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH
Confidence 34455555655555555443
No 13
>1q6w_A Monoamine oxidase regulatory protein, putative; structural genomics, nysgxrc T805, hot DOG fold; 2.81A {Archaeoglobus fulgidus} SCOP: d.38.1.4
Probab=22.50 E-value=1.8e+02 Score=26.26 Aligned_cols=20 Identities=15% Similarity=0.278 Sum_probs=16.5
Q ss_pred HhhhhhhccCCccCCcEEEE
Q 005371 244 LSSAMIHATRPFVLNEWIQT 263 (699)
Q Consensus 244 ~aGi~I~~~rPFrIGD~I~I 263 (699)
..|+-+-|.+|..+||.|++
T Consensus 96 ~~~~~~rF~~PV~~Gd~l~~ 115 (161)
T 1q6w_A 96 FGIKDVRFLRPVFIGDTIAA 115 (161)
T ss_dssp EEEEEEEECSCCBTTCEEEE
T ss_pred ceeEEEEEecCCCCCCEEEE
Confidence 45566778899999999987
No 14
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=22.04 E-value=80 Score=27.01 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=19.7
Q ss_pred CCccCCcEEEEeecCCCeeEEEEEEec
Q 005371 253 RPFVLNEWIQTKIEGYEVSGTVEHVGW 279 (699)
Q Consensus 253 rPFrIGD~I~Iki~~~~~~G~VeeIgL 279 (699)
+.++|||+|+| ..++..|+|.-||-
T Consensus 4 ~~i~vG~Rv~v--~~~~~~G~VryvG~ 28 (84)
T 4b6m_A 4 ETIHVGDRCLC--RPGDRLGSVRFVGR 28 (84)
T ss_dssp -CCCTTCEEEE--TTTTEEEEEEEEEE
T ss_pred cCcccCCEEEE--cCCCeEEEEEEEec
Confidence 46899999998 34567899999884
No 15
>4hpv_A S-adenosylmethionine synthase; structural genomics, PSI-biology; 2.21A {Sulfolobus solfataricus P2}
Probab=21.97 E-value=4.8e+02 Score=28.38 Aligned_cols=79 Identities=15% Similarity=0.275 Sum_probs=57.0
Q ss_pred EEEEeccCCHHHHHHHHHHHHHHHHh------CCCccccccceEEEEEeeCCCCceEEEEEEEEEecC---ChhhHHHHH
Q 005371 318 THLAISHLDVHKINSIVADMRKVLAK------NPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTS---HHEEYLCVK 388 (699)
Q Consensus 318 i~l~I~ytd~ekv~~l~~~i~e~L~~------~p~v~~~~~~p~V~v~~~~~~d~sv~i~V~~~v~~~---~~~~~~~vr 388 (699)
+.+++.|.+....++++-.+.++|.+ +|.+-.| +-+.++.. +..+.+.|-|-.-+. +-++|+..+
T Consensus 164 TS~gVGyAPlS~~E~~Vl~~E~~Lns~~~k~~~P~~GeD-----IKVMG~R~-g~~i~LTvA~a~v~r~v~~~~~Y~~~K 237 (407)
T 4hpv_A 164 TSFGVGFAPLTKLEKLVYETERHLNSKQFKAKLPEVGED-----IKVMGLRR-GNEVDLTIAMATISELIEDVNHYINVK 237 (407)
T ss_dssp CCEEEEEESCCHHHHHHHHHHHHHHSHHHHHHCTTEEEE-----EEEEEEEE-TTEEEEEEEEEEEGGGCCSHHHHHHHH
T ss_pred cCceeccCCCCHHHHHHHHHHHHhcchhhhhhCcccCCc-----eEEEEEee-CCeEEEEEEhhhhhhhhCCHHHHHHHH
Confidence 45788887777888887778887754 5666544 44444443 247777777766543 668899999
Q ss_pred HHHHHHHHHHHHHC
Q 005371 389 EAILLDLLRVISHH 402 (699)
Q Consensus 389 ~eL~~~Il~~~~e~ 402 (699)
+++...+.+...+.
T Consensus 238 ~~v~~~v~~~a~~~ 251 (407)
T 4hpv_A 238 EQVRNQILDLASKI 251 (407)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988754
No 16
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=21.32 E-value=3.2e+02 Score=23.90 Aligned_cols=94 Identities=6% Similarity=0.023 Sum_probs=58.1
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCccccccceEEEEEeeC---------CCCceEEEEEEEEEecCChhhHHHHHHHHHHHH
Q 005371 325 LDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNIN---------PENQALLILVSCFVKTSHHEEYLCVKEAILLDL 395 (699)
Q Consensus 325 td~ekv~~l~~~i~e~L~~~p~v~~~~~~p~V~v~~~~---------~~d~sv~i~V~~~v~~~~~~~~~~vr~eL~~~I 395 (699)
.+.++.+++.+.+.+.+.+......+.. .+.+..+. .++..+.+.|.++-..+ -+-+.++..+|
T Consensus 10 ~s~e~~~~l~~~i~~al~~~lg~p~~~~--~v~i~~~~~~~~~~gg~~~~~~~~i~i~~~~grt-----~eqK~~l~~~l 82 (128)
T 1mww_A 10 KLAPRREKLAEVIYNSLHLGLDIPKGKH--AIRFLCLEKEDFYYPFDRSDDYTVIEINLMAGRM-----EGTKKRLIKML 82 (128)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCTTSS--CEEEEEECGGGEECCTTSCTTCEEEEEEEETTCC-----HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHCcChHHE--EEEEEEeChHHeecCCCCCCCcEEEEEEECCCCC-----HHHHHHHHHHH
Confidence 4678888888888888877655554432 24444332 22234566666554332 35678899999
Q ss_pred HHHHHH-CCCccCCCcEEEEEeeccCccCCCCCcc
Q 005371 396 LRVISH-HRARLATPIRTVQKIFSDADLENVPFAD 429 (699)
Q Consensus 396 l~~~~e-~GIe~a~P~qtv~~~~~~~~~e~~P~~~ 429 (699)
.+.+.+ .|+ |...+.+...+.+.++.-|+.
T Consensus 83 ~~~l~~~lg~----~~~~v~V~i~e~~~~~wg~gG 113 (128)
T 1mww_A 83 FSELEYKLGI----RAHDVEITIKEQPAHCWGFRG 113 (128)
T ss_dssp HHHHHHHHCC----CGGGEEEEEEEECGGGEEETT
T ss_pred HHHHHHHhCc----ChhhEEEEEEECCHHHeeECC
Confidence 999987 466 556677777666666544433
No 17
>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=20.51 E-value=54 Score=28.68 Aligned_cols=30 Identities=13% Similarity=0.173 Sum_probs=22.5
Q ss_pred hhhccCCccCCcEEEEeecCCCeeEEEEEEece
Q 005371 248 MIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWW 280 (699)
Q Consensus 248 ~I~~~rPFrIGD~I~Iki~~~~~~G~VeeIgL~ 280 (699)
.++....+.+||+|++ .+...|+|.-||-.
T Consensus 10 ~~~~~~~~~vG~RV~V---~g~~~GtVryvG~v 39 (95)
T 2cp0_A 10 LMLSALGLRLGDRVLL---DGQKTGTLRFCGTT 39 (95)
T ss_dssp SHHHHHTCCTTCEEEE---TTTEEEEEEEEECC
T ss_pred ccccccCCCCCCEEEE---CCCCeEEEEEeccc
Confidence 3444567999999999 24568999988864
Done!