Query 005372
Match_columns 699
No_of_seqs 452 out of 3097
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 23:29:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005372.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005372hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vvg_A Kinesin-2; motor protei 100.0 2.5E-83 8.5E-88 691.5 29.8 325 25-361 3-345 (350)
2 3bfn_A Kinesin-like protein KI 100.0 1.1E-83 3.9E-88 700.8 27.1 330 21-362 16-358 (388)
3 2owm_A Nckin3-434, related to 100.0 1.8E-82 6.3E-87 703.2 30.8 328 24-359 36-421 (443)
4 1t5c_A CENP-E protein, centrom 100.0 2E-82 6.8E-87 684.5 28.7 323 24-361 2-338 (349)
5 2y65_A Kinesin, kinesin heavy 100.0 1.4E-82 4.9E-87 689.0 27.1 327 20-362 5-344 (365)
6 3b6u_A Kinesin-like protein KI 100.0 1.8E-82 6.3E-87 688.9 25.4 332 18-360 13-362 (372)
7 1goj_A Kinesin, kinesin heavy 100.0 9.2E-82 3.1E-86 680.7 29.7 326 23-363 3-342 (355)
8 3cob_A Kinesin heavy chain-lik 100.0 1.7E-81 5.8E-86 681.1 30.9 323 24-361 3-337 (369)
9 1x88_A Kinesin-like protein KI 100.0 4.4E-82 1.5E-86 684.4 25.8 329 22-359 4-358 (359)
10 2wbe_C Bipolar kinesin KRP-130 100.0 6.5E-82 2.2E-86 685.9 25.1 330 21-361 18-371 (373)
11 1bg2_A Kinesin; motor protein, 100.0 5.4E-82 1.8E-86 675.5 23.4 312 21-351 2-325 (325)
12 2zfi_A Kinesin-like protein KI 100.0 1.9E-81 6.6E-86 681.0 27.0 324 25-358 3-361 (366)
13 3lre_A Kinesin-like protein KI 100.0 5.4E-81 1.8E-85 675.0 28.9 324 23-351 7-355 (355)
14 2h58_A Kinesin-like protein KI 100.0 2.4E-80 8.1E-85 664.1 29.8 316 24-352 2-329 (330)
15 4a14_A Kinesin, kinesin-like p 100.0 1.9E-80 6.5E-85 668.6 29.0 313 21-349 6-344 (344)
16 3gbj_A KIF13B protein; kinesin 100.0 2.2E-80 7.5E-85 670.0 23.6 322 26-351 1-350 (354)
17 2heh_A KIF2C protein; kinesin, 100.0 8.8E-80 3E-84 670.1 27.8 318 20-354 45-385 (387)
18 1ry6_A Internal kinesin; kines 100.0 1.8E-79 6.3E-84 663.6 26.1 320 27-356 1-336 (360)
19 1v8k_A Kinesin-like protein KI 100.0 4.2E-79 1.4E-83 668.6 28.0 318 20-354 65-405 (410)
20 1f9v_A Kinesin-like protein KA 100.0 9.9E-79 3.4E-83 655.5 30.2 318 25-354 2-344 (347)
21 3t0q_A AGR253WP; kinesin, alph 100.0 6.9E-79 2.4E-83 657.5 28.7 318 24-353 3-346 (349)
22 2rep_A Kinesin-like protein KI 100.0 6.7E-79 2.3E-83 662.2 27.6 322 23-351 19-376 (376)
23 3nwn_A Kinesin-like protein KI 100.0 1.4E-78 4.6E-83 656.6 24.5 313 23-351 21-359 (359)
24 2nr8_A Kinesin-like protein KI 100.0 1.5E-78 5.2E-83 656.0 24.6 318 18-351 15-358 (358)
25 3u06_A Protein claret segregat 100.0 5.9E-78 2E-82 661.7 27.1 316 25-354 58-385 (412)
26 4etp_A Kinesin-like protein KA 100.0 8.1E-77 2.8E-81 652.1 27.5 319 25-354 58-400 (403)
27 3dc4_A Kinesin-like protein NO 100.0 6.7E-77 2.3E-81 640.0 24.3 309 16-353 12-337 (344)
28 4h1g_A Maltose binding protein 100.0 4E-72 1.4E-76 656.1 29.4 319 25-352 373-712 (715)
29 2kin_B Kinesin; motor protein, 99.9 2.1E-26 7.2E-31 205.5 4.4 82 280-361 2-86 (100)
30 3kin_B Kinesin heavy chain; mo 99.9 4.3E-24 1.5E-28 196.2 7.0 80 283-362 1-83 (117)
31 2o0a_A S.cerevisiae chromosome 99.9 5.8E-23 2E-27 212.1 8.1 256 25-353 23-291 (298)
32 3arc_U Photosystem II 12 kDa e 99.3 2.9E-12 9.8E-17 113.7 6.6 60 582-644 14-74 (97)
33 1s5l_U Photosystem II 12 kDa e 99.2 5.5E-12 1.9E-16 117.0 5.7 60 582-644 51-114 (134)
34 2duy_A Competence protein come 99.2 2.1E-11 7.3E-16 102.9 6.2 58 583-643 16-74 (75)
35 2edu_A Kinesin-like protein KI 99.0 1.8E-10 6.3E-15 102.2 4.0 61 582-642 28-90 (98)
36 2i5h_A Hypothetical protein AF 99.0 1.3E-10 4.3E-15 114.6 3.1 53 590-642 128-189 (205)
37 3bzc_A TEX; helix-turn-helix, 98.7 2.1E-08 7.3E-13 117.7 7.4 69 581-649 495-565 (785)
38 3psf_A Transcription elongatio 98.1 1.6E-06 5.5E-11 104.4 5.2 65 581-645 699-771 (1030)
39 3psi_A Transcription elongatio 98.0 3E-06 1E-10 103.5 5.0 65 581-645 696-768 (1219)
40 3ci0_K Pseudopilin GSPK; gener 97.5 2.2E-05 7.4E-10 82.8 2.0 62 584-645 186-256 (298)
41 2bcq_A DNA polymerase lambda; 97.3 0.00014 5E-09 77.8 5.3 55 587-641 50-115 (335)
42 2fmp_A DNA polymerase beta; nu 96.9 0.00058 2E-08 73.1 4.7 60 589-649 52-124 (335)
43 2ihm_A POL MU, DNA polymerase 96.6 0.0012 4.1E-08 71.3 4.7 53 589-641 56-121 (360)
44 2a1j_B DNA excision repair pro 96.6 0.00054 1.9E-08 59.4 1.2 62 582-643 20-85 (91)
45 1vq8_Y 50S ribosomal protein L 96.5 0.0004 1.4E-08 71.1 0.0 51 589-643 10-69 (241)
46 1z00_A DNA excision repair pro 96.5 0.00077 2.6E-08 58.1 1.8 63 585-647 10-76 (89)
47 1kft_A UVRC, excinuclease ABC 96.2 0.00087 3E-08 56.4 0.2 57 585-641 15-75 (78)
48 1ixr_A Holliday junction DNA h 96.1 0.0023 8E-08 63.2 2.8 49 594-642 72-127 (191)
49 1x2i_A HEF helicase/nuclease; 96.1 0.0042 1.4E-07 51.1 3.9 53 593-645 13-69 (75)
50 1jms_A Terminal deoxynucleotid 95.9 0.0047 1.6E-07 67.2 4.2 53 589-641 75-140 (381)
51 2ztd_A Holliday junction ATP-d 95.8 0.0038 1.3E-07 62.6 2.8 51 594-644 88-145 (212)
52 1cuk_A RUVA protein; DNA repai 95.5 0.0087 3E-07 59.6 4.1 47 594-640 73-126 (203)
53 2a1j_A DNA repair endonuclease 95.2 0.0066 2.3E-07 49.2 1.9 46 592-643 2-56 (63)
54 2w9m_A Polymerase X; SAXS, DNA 95.0 0.018 6E-07 65.9 5.1 47 590-640 93-149 (578)
55 1z00_B DNA repair endonuclease 94.5 0.016 5.6E-07 49.7 2.5 36 587-627 11-46 (84)
56 3f2b_A DNA-directed DNA polyme 94.1 0.05 1.7E-06 65.9 6.4 60 584-643 946-1017(1041)
57 2bgw_A XPF endonuclease; hydro 93.4 0.079 2.7E-06 52.8 5.5 50 593-642 161-214 (219)
58 3c65_A Uvrabc system protein C 92.0 0.028 9.7E-07 56.8 0.0 51 591-641 170-223 (226)
59 2hnh_A DNA polymerase III alph 90.8 0.22 7.4E-06 59.9 5.9 64 583-649 811-890 (910)
60 3ec2_A DNA replication protein 90.7 0.057 2E-06 51.1 0.6 50 82-133 7-56 (180)
61 3b0x_A DNA polymerase beta fam 90.4 0.22 7.5E-06 56.8 5.3 45 592-639 91-145 (575)
62 1z00_A DNA excision repair pro 89.3 0.2 6.9E-06 42.7 2.9 39 586-625 43-81 (89)
63 2hpi_A DNA polymerase III alph 89.0 0.28 9.7E-06 60.3 5.0 63 583-648 868-945 (1220)
64 1ixr_A Holliday junction DNA h 88.1 0.23 7.8E-06 48.9 2.8 28 587-614 100-127 (191)
65 1x2i_A HEF helicase/nuclease; 87.7 0.42 1.4E-05 38.9 3.7 31 586-616 38-68 (75)
66 2w58_A DNAI, primosome compone 87.7 0.15 5E-06 49.0 1.1 50 81-132 21-71 (202)
67 1cuk_A RUVA protein; DNA repai 87.7 0.25 8.6E-06 49.0 2.8 27 587-613 101-127 (203)
68 1wcn_A Transcription elongatio 87.2 0.47 1.6E-05 39.2 3.7 50 594-647 7-66 (70)
69 1kft_A UVRC, excinuclease ABC 86.2 0.36 1.2E-05 40.1 2.6 28 586-613 48-75 (78)
70 3ci0_K Pseudopilin GSPK; gener 85.1 0.99 3.4E-05 47.2 5.8 62 583-644 75-180 (298)
71 3c1y_A DNA integrity scanning 85.0 0.73 2.5E-05 49.8 4.8 51 592-642 313-367 (377)
72 2qgz_A Helicase loader, putati 84.9 0.25 8.6E-06 51.6 1.2 50 82-133 121-170 (308)
73 2a1j_B DNA excision repair pro 84.9 0.36 1.2E-05 41.4 1.9 34 586-620 56-89 (91)
74 1b22_A DNA repair protein RAD5 83.7 0.43 1.5E-05 43.2 2.0 44 584-627 48-94 (114)
75 2fmp_A DNA polymerase beta; nu 83.3 0.76 2.6E-05 48.9 4.1 33 591-627 95-127 (335)
76 1jbk_A CLPB protein; beta barr 82.2 0.4 1.4E-05 44.2 1.2 27 106-132 34-60 (195)
77 2ztd_A Holliday junction ATP-d 81.3 0.73 2.5E-05 46.1 2.8 30 588-617 117-147 (212)
78 2ihm_A POL MU, DNA polymerase 80.4 1.9 6.4E-05 46.4 5.8 33 592-628 100-132 (360)
79 1jms_A Terminal deoxynucleotid 80.1 1.1 3.9E-05 48.4 4.1 32 592-627 119-150 (381)
80 2p65_A Hypothetical protein PF 78.9 0.46 1.6E-05 43.8 0.4 28 105-132 33-60 (187)
81 3t15_A Ribulose bisphosphate c 77.4 0.86 2.9E-05 47.0 2.0 36 97-132 14-53 (293)
82 2bcq_A DNA polymerase lambda; 76.9 1.7 5.7E-05 46.3 4.1 32 593-628 95-126 (335)
83 2nrt_A Uvrabc system protein C 76.3 1.2 4.2E-05 44.6 2.7 47 593-640 167-217 (220)
84 4gfj_A Topoisomerase V; helix- 76.2 1.7 5.9E-05 47.2 3.9 52 593-644 467-521 (685)
85 2duy_A Competence protein come 76.2 0.91 3.1E-05 37.4 1.4 25 589-613 48-72 (75)
86 3uk6_A RUVB-like 2; hexameric 75.9 0.58 2E-05 49.0 0.2 46 81-132 40-87 (368)
87 3vdp_A Recombination protein R 75.7 1.3 4.6E-05 44.0 2.7 55 593-649 25-79 (212)
88 2kjq_A DNAA-related protein; s 74.3 1.8 6.3E-05 40.0 3.2 42 81-133 13-54 (149)
89 3bqs_A Uncharacterized protein 73.8 1.1 3.9E-05 39.0 1.5 44 592-640 2-45 (93)
90 1pu6_A 3-methyladenine DNA gly 72.9 2.1 7.1E-05 42.7 3.3 24 591-614 118-141 (218)
91 1vdd_A Recombination protein R 72.6 1.8 6.1E-05 43.6 2.7 55 593-649 11-65 (228)
92 1l8q_A Chromosomal replication 72.3 1 3.6E-05 46.5 1.0 49 81-133 7-55 (324)
93 3te6_A Regulatory protein SIR3 71.8 0.82 2.8E-05 48.3 0.1 23 110-132 40-62 (318)
94 1kg2_A A/G-specific adenine gl 71.7 2.2 7.4E-05 42.6 3.2 26 592-617 107-132 (225)
95 1g8p_A Magnesium-chelatase 38 71.3 0.57 1.9E-05 48.5 -1.3 43 81-132 20-62 (350)
96 1kea_A Possible G-T mismatches 71.1 2.3 7.9E-05 42.4 3.2 24 591-614 112-135 (221)
97 2bjv_A PSP operon transcriptio 71.0 1.1 3.7E-05 44.9 0.8 44 82-132 3-46 (265)
98 2bgw_A XPF endonuclease; hydro 71.0 2.4 8.2E-05 41.9 3.3 28 587-614 187-214 (219)
99 3mab_A Uncharacterized protein 70.1 1.9 6.4E-05 37.6 2.0 43 592-639 2-44 (93)
100 4glx_A DNA ligase; inhibitor, 69.9 4.3 0.00015 46.4 5.5 53 586-638 472-528 (586)
101 3fhg_A Mjogg, N-glycosylase/DN 69.8 2.5 8.4E-05 41.8 3.1 23 591-613 114-136 (207)
102 1exn_A 5'-exonuclease, 5'-nucl 69.5 2.4 8.1E-05 44.3 3.0 38 597-639 206-246 (290)
103 2abk_A Endonuclease III; DNA-r 68.8 2.7 9.2E-05 41.5 3.1 24 591-614 106-129 (211)
104 3sgi_A DNA ligase; HET: DNA AM 68.7 1 3.5E-05 51.7 0.0 46 586-631 553-599 (615)
105 3h4m_A Proteasome-activating n 68.4 1.2 4.2E-05 44.8 0.5 51 81-132 13-68 (285)
106 2r62_A Cell division protease 68.4 1.1 3.9E-05 44.6 0.3 50 81-132 7-61 (268)
107 3b9p_A CG5977-PA, isoform A; A 67.8 1.3 4.4E-05 45.0 0.5 50 82-132 18-71 (297)
108 1orn_A Endonuclease III; DNA r 67.6 3 0.0001 41.7 3.2 24 591-614 110-133 (226)
109 4e9f_A Methyl-CPG-binding doma 67.5 1.9 6.5E-05 41.1 1.6 22 592-613 102-123 (161)
110 2qz4_A Paraplegin; AAA+, SPG7, 67.3 1.2 4E-05 44.1 0.1 19 114-132 38-56 (262)
111 3b0x_A DNA polymerase beta fam 66.9 3.4 0.00012 46.9 3.9 46 596-641 55-112 (575)
112 1qde_A EIF4A, translation init 66.7 1.7 5.7E-05 42.0 1.1 23 107-131 45-67 (224)
113 2z4s_A Chromosomal replication 66.5 1.6 5.6E-05 47.7 1.1 49 80-133 100-148 (440)
114 3cf0_A Transitional endoplasmi 66.4 1.4 4.8E-05 45.4 0.5 50 82-132 12-66 (301)
115 4glx_A DNA ligase; inhibitor, 66.3 2 6.8E-05 49.1 1.7 28 587-614 537-564 (586)
116 2owo_A DNA ligase; protein-DNA 66.2 5.6 0.00019 46.2 5.5 29 585-613 471-499 (671)
117 2chg_A Replication factor C sm 66.0 1.4 4.7E-05 41.5 0.3 16 117-132 40-55 (226)
118 1vec_A ATP-dependent RNA helic 65.8 1.8 6.1E-05 41.1 1.1 23 108-132 35-57 (206)
119 2gxq_A Heat resistant RNA depe 65.3 1.7 5.9E-05 41.2 0.9 22 108-131 33-54 (207)
120 2c9o_A RUVB-like 1; hexameric 65.1 1.6 5.4E-05 47.9 0.6 46 81-132 33-80 (456)
121 2h56_A DNA-3-methyladenine gly 64.8 3.5 0.00012 41.4 3.1 24 591-614 135-158 (233)
122 3bos_A Putative DNA replicatio 64.7 1.7 6E-05 41.7 0.8 45 82-132 25-69 (242)
123 3fhf_A Mjogg, N-glycosylase/DN 64.3 3.6 0.00012 41.0 3.0 22 592-613 122-144 (214)
124 1b22_A DNA repair protein RAD5 64.0 3.7 0.00013 37.0 2.7 51 592-643 24-79 (114)
125 2kp7_A Crossover junction endo 63.8 3.8 0.00013 35.2 2.6 28 583-612 49-76 (87)
126 2owo_A DNA ligase; protein-DNA 63.8 1.7 5.9E-05 50.4 0.6 29 586-614 536-564 (671)
127 1sxj_D Activator 1 41 kDa subu 63.2 1.8 6.3E-05 44.6 0.7 41 83-132 35-75 (353)
128 3d8b_A Fidgetin-like protein 1 63.0 1.7 6E-05 45.9 0.4 50 82-132 81-134 (357)
129 2w9m_A Polymerase X; SAXS, DNA 62.9 4.2 0.00014 46.3 3.6 59 583-641 46-116 (578)
130 2edu_A Kinesin-like protein KI 62.2 4.2 0.00014 35.2 2.7 24 591-614 67-90 (98)
131 1d2n_A N-ethylmaleimide-sensit 62.1 2.4 8.2E-05 42.6 1.2 21 112-132 61-81 (272)
132 3dkp_A Probable ATP-dependent 61.6 2.2 7.6E-05 41.9 0.9 23 107-131 60-82 (245)
133 2v1u_A Cell division control p 61.4 2.6 8.9E-05 43.7 1.4 20 113-132 42-61 (387)
134 1p9r_A General secretion pathw 60.7 2.6 8.9E-05 46.1 1.3 28 106-133 158-185 (418)
135 4b21_A Probable DNA-3-methylad 60.6 4.6 0.00016 40.6 3.1 23 592-614 148-170 (232)
136 1u9l_A Transcription elongatio 60.2 8.2 0.00028 31.7 3.9 46 594-643 6-60 (70)
137 3bor_A Human initiation factor 59.9 1.5 5.2E-05 43.1 -0.7 24 107-132 61-84 (237)
138 3c1y_A DNA integrity scanning 59.6 4.4 0.00015 43.8 2.8 29 585-613 338-366 (377)
139 3n5n_X A/G-specific adenine DN 59.4 4.9 0.00017 41.8 3.1 23 592-614 126-149 (287)
140 2yg9_A DNA-3-methyladenine gly 59.4 5.1 0.00017 40.1 3.1 22 593-614 145-166 (225)
141 2pl3_A Probable ATP-dependent 58.6 2.9 9.9E-05 40.8 1.1 24 107-132 56-79 (236)
142 4etp_B Spindle POLE BODY-assoc 58.6 13 0.00046 39.1 6.1 205 78-333 90-308 (333)
143 1dgs_A DNA ligase; AMP complex 58.4 3.1 0.0001 48.3 1.4 44 587-630 532-576 (667)
144 3fsp_A A/G-specific adenine gl 58.1 5.3 0.00018 42.6 3.2 28 591-618 115-142 (369)
145 3s6i_A DNA-3-methyladenine gly 58.0 5.5 0.00019 39.9 3.1 22 593-614 138-159 (228)
146 1mpg_A ALKA, 3-methyladenine D 58.0 5.3 0.00018 41.1 3.1 22 593-614 206-227 (282)
147 1xwi_A SKD1 protein; VPS4B, AA 57.7 2.7 9.2E-05 43.9 0.7 50 82-132 9-62 (322)
148 3i0w_A 8-oxoguanine-DNA-glycos 57.6 4.9 0.00017 41.7 2.7 23 592-614 209-231 (290)
149 3jvv_A Twitching mobility prot 56.9 2.9 9.9E-05 44.7 0.8 29 105-133 113-141 (356)
150 4e9f_A Methyl-CPG-binding doma 56.8 5.2 0.00018 38.1 2.5 55 585-640 63-122 (161)
151 4b4t_M 26S protease regulatory 56.7 3 0.0001 46.0 0.9 50 82-132 178-232 (434)
152 3tka_A Ribosomal RNA small sub 56.6 4.8 0.00017 43.0 2.5 43 586-628 172-220 (347)
153 1t6n_A Probable ATP-dependent 56.6 3.1 0.0001 40.1 0.9 24 107-132 45-68 (220)
154 3iuy_A Probable ATP-dependent 56.3 3.1 0.00011 40.3 0.9 24 107-132 51-74 (228)
155 1fnn_A CDC6P, cell division co 55.5 3.9 0.00013 42.5 1.6 45 82-132 14-61 (389)
156 2jhn_A ALKA, 3-methyladenine D 55.4 6.3 0.00021 40.9 3.1 22 592-613 208-229 (295)
157 3b6e_A Interferon-induced heli 55.1 1.7 5.8E-05 41.3 -1.2 22 109-132 44-65 (216)
158 1ixz_A ATP-dependent metallopr 55.1 2.8 9.6E-05 41.5 0.3 15 118-132 52-66 (254)
159 3ly5_A ATP-dependent RNA helic 54.9 2.3 8E-05 42.7 -0.3 24 106-131 84-107 (262)
160 1wrb_A DJVLGB; RNA helicase, D 54.4 3.7 0.00013 40.6 1.1 24 107-132 54-77 (253)
161 2qby_A CDC6 homolog 1, cell di 54.3 4.2 0.00014 42.0 1.6 20 113-132 43-62 (386)
162 2eyu_A Twitching motility prot 54.3 4.4 0.00015 41.2 1.6 19 115-133 25-43 (261)
163 3co5_A Putative two-component 54.3 3.1 0.00011 37.8 0.5 18 116-133 28-45 (143)
164 3syl_A Protein CBBX; photosynt 54.3 3.5 0.00012 41.8 0.9 20 113-132 65-84 (309)
165 3n0u_A Probable N-glycosylase/ 54.1 6.1 0.00021 39.5 2.6 23 591-613 126-149 (219)
166 3n70_A Transport activator; si 53.6 3.6 0.00012 37.3 0.8 19 114-132 23-41 (145)
167 3eiq_A Eukaryotic initiation f 53.3 4 0.00014 42.8 1.2 25 106-132 70-94 (414)
168 1wg8_A Predicted S-adenosylmet 52.4 6.3 0.00022 41.0 2.5 43 586-628 132-180 (285)
169 1vq8_Y 50S ribosomal protein L 52.3 3 0.0001 42.4 0.0 29 585-613 39-67 (241)
170 2oxc_A Probable ATP-dependent 51.9 4.3 0.00015 39.6 1.1 22 108-131 56-77 (230)
171 3fmo_B ATP-dependent RNA helic 51.9 3.9 0.00013 42.1 0.8 27 106-132 122-148 (300)
172 3vfd_A Spastin; ATPase, microt 51.5 3.8 0.00013 43.6 0.7 51 81-132 111-165 (389)
173 3llm_A ATP-dependent RNA helic 51.2 3.5 0.00012 40.6 0.3 25 106-132 69-93 (235)
174 2xhi_A N-glycosylase/DNA lyase 51.2 7.8 0.00027 41.5 3.1 24 591-614 250-273 (360)
175 3ber_A Probable ATP-dependent 51.1 4.5 0.00015 40.2 1.1 24 107-132 74-97 (249)
176 2qp9_X Vacuolar protein sortin 50.9 4.1 0.00014 43.1 0.8 51 81-132 47-101 (355)
177 1lv7_A FTSH; alpha/beta domain 50.2 4.1 0.00014 40.4 0.6 50 81-132 8-62 (257)
178 3fe2_A Probable ATP-dependent 50.1 3.9 0.00013 40.2 0.4 24 107-132 60-83 (242)
179 2jlq_A Serine protease subunit 49.4 7.4 0.00025 42.4 2.6 27 104-131 9-35 (451)
180 1wcn_A Transcription elongatio 49.2 13 0.00043 30.5 3.3 29 585-613 31-59 (70)
181 2ewv_A Twitching motility prot 49.0 5.6 0.00019 42.5 1.5 29 104-132 125-153 (372)
182 4b4t_K 26S protease regulatory 48.9 8.5 0.00029 42.2 2.9 75 82-157 169-265 (428)
183 1u0j_A DNA replication protein 48.6 5.3 0.00018 41.2 1.2 28 105-132 91-121 (267)
184 1ofh_A ATP-dependent HSL prote 48.2 4.2 0.00014 40.9 0.3 18 115-132 50-67 (310)
185 3fmp_B ATP-dependent RNA helic 48.1 5.5 0.00019 43.2 1.3 26 106-131 122-147 (479)
186 1gvn_B Zeta; postsegregational 47.6 9.1 0.00031 39.2 2.8 36 97-132 14-50 (287)
187 1iy2_A ATP-dependent metallopr 47.5 4.4 0.00015 40.9 0.3 15 118-132 76-90 (278)
188 2j0s_A ATP-dependent RNA helic 47.3 4.8 0.00016 42.4 0.6 24 107-132 68-91 (410)
189 3pfi_A Holliday junction ATP-d 47.2 3.5 0.00012 42.5 -0.4 44 83-132 27-72 (338)
190 1njg_A DNA polymerase III subu 47.2 4.9 0.00017 37.9 0.6 17 116-132 46-62 (250)
191 1q0u_A Bstdead; DEAD protein, 46.7 3 0.0001 40.2 -1.0 22 108-131 36-57 (219)
192 2zan_A Vacuolar protein sortin 46.6 4.7 0.00016 44.1 0.4 51 81-132 130-184 (444)
193 1sxj_C Activator 1 40 kDa subu 46.2 4.6 0.00016 41.9 0.3 16 118-133 49-64 (340)
194 2chq_A Replication factor C sm 46.0 5 0.00017 40.4 0.5 20 113-132 36-55 (319)
195 2qby_B CDC6 homolog 3, cell di 45.6 6.1 0.00021 41.1 1.1 46 81-132 16-62 (384)
196 3eie_A Vacuolar protein sortin 45.6 5.3 0.00018 41.3 0.6 50 82-132 15-68 (322)
197 2fz4_A DNA repair protein RAD2 44.5 6 0.0002 39.2 0.8 23 109-133 104-126 (237)
198 1iqp_A RFCS; clamp loader, ext 44.5 5.3 0.00018 40.4 0.4 21 112-132 43-63 (327)
199 3c65_A Uvrabc system protein C 44.3 4.7 0.00016 40.6 0.0 27 586-613 197-223 (226)
200 3fht_A ATP-dependent RNA helic 44.2 5.5 0.00019 41.6 0.5 26 107-132 56-81 (412)
201 2z0m_A 337AA long hypothetical 43.9 5.8 0.0002 40.1 0.6 23 108-132 26-48 (337)
202 4fcw_A Chaperone protein CLPB; 43.5 4.6 0.00016 40.9 -0.2 17 116-132 48-64 (311)
203 3pey_A ATP-dependent RNA helic 43.4 5.3 0.00018 41.3 0.2 25 108-132 37-61 (395)
204 1u9l_A Transcription elongatio 42.6 17 0.00059 29.8 3.1 27 587-613 32-58 (70)
205 1s2m_A Putative ATP-dependent 42.4 6 0.0002 41.4 0.4 24 107-132 52-75 (400)
206 1tue_A Replication protein E1; 42.0 5.5 0.00019 39.7 0.1 18 116-133 59-76 (212)
207 3pxg_A Negative regulator of g 41.4 7.6 0.00026 42.7 1.1 42 83-133 178-219 (468)
208 2ziu_A MUS81 protein; helix-ha 41.3 15 0.00051 38.1 3.3 36 587-627 230-265 (311)
209 4b3f_X DNA-binding protein smu 41.3 6.9 0.00024 44.8 0.8 16 118-133 208-223 (646)
210 3h1t_A Type I site-specific re 41.2 7 0.00024 43.8 0.8 27 106-133 190-216 (590)
211 3hu3_A Transitional endoplasmi 41.2 6.8 0.00023 43.6 0.7 19 114-132 237-255 (489)
212 2i4i_A ATP-dependent RNA helic 41.0 7.4 0.00025 40.8 0.9 24 107-132 46-69 (417)
213 3fho_A ATP-dependent RNA helic 40.9 8.1 0.00028 42.7 1.2 27 106-132 149-175 (508)
214 1in4_A RUVB, holliday junction 40.4 6.5 0.00022 41.0 0.4 16 117-132 53-68 (334)
215 1n0w_A DNA repair protein RAD5 39.8 8 0.00027 37.4 0.8 28 105-132 11-41 (243)
216 2p5t_B PEZT; postsegregational 39.6 12 0.00041 37.2 2.2 36 96-131 12-48 (253)
217 3oiy_A Reverse gyrase helicase 39.3 8.4 0.00029 40.8 1.0 23 107-131 30-52 (414)
218 2x8a_A Nuclear valosin-contain 39.2 7.1 0.00024 39.7 0.4 50 82-132 7-61 (274)
219 2oap_1 GSPE-2, type II secreti 39.1 7.4 0.00025 43.6 0.6 20 111-132 258-277 (511)
220 2abk_A Endonuclease III; DNA-r 39.0 26 0.00088 34.3 4.4 56 587-642 63-129 (211)
221 1kg2_A A/G-specific adenine gl 38.8 35 0.0012 33.7 5.4 58 586-643 63-130 (225)
222 4gp7_A Metallophosphoesterase; 38.6 8.1 0.00028 36.1 0.6 18 116-133 10-27 (171)
223 4b4t_I 26S protease regulatory 38.4 19 0.00065 39.6 3.6 75 82-157 179-275 (437)
224 4b4t_L 26S protease subunit RP 37.8 8.7 0.0003 42.3 0.8 50 82-132 178-232 (437)
225 1xti_A Probable ATP-dependent 37.8 8.7 0.0003 39.8 0.8 24 107-132 39-62 (391)
226 2i1q_A DNA repair and recombin 37.5 23 0.00078 36.4 3.9 38 588-625 30-70 (322)
227 2w0m_A SSO2452; RECA, SSPF, un 37.1 11 0.00036 36.0 1.2 16 117-132 25-40 (235)
228 3pvs_A Replication-associated 36.6 9.3 0.00032 41.9 0.8 44 83-132 24-67 (447)
229 1sxj_E Activator 1 40 kDa subu 36.4 8.7 0.0003 39.6 0.5 15 118-132 39-53 (354)
230 1b43_A Protein (FEN-1); nuclea 36.0 31 0.0011 36.2 4.8 39 598-641 241-282 (340)
231 3sgi_A DNA ligase; HET: DNA AM 35.9 7.7 0.00026 44.5 0.0 17 623-639 561-578 (615)
232 3c8u_A Fructokinase; YP_612366 35.6 16 0.00053 35.0 2.2 19 114-132 21-39 (208)
233 1w5s_A Origin recognition comp 35.6 9.8 0.00034 39.9 0.8 25 108-132 40-69 (412)
234 1hqc_A RUVB; extended AAA-ATPa 35.6 8.7 0.0003 39.0 0.3 45 82-132 9-55 (324)
235 3i5x_A ATP-dependent RNA helic 35.4 13 0.00043 41.2 1.7 26 106-131 102-127 (563)
236 3lw7_A Adenylate kinase relate 35.3 11 0.00039 33.8 1.1 15 117-131 3-17 (179)
237 4b4t_J 26S protease regulatory 35.2 9.4 0.00032 41.6 0.6 50 82-132 145-199 (405)
238 1rif_A DAR protein, DNA helica 35.2 6.9 0.00024 39.4 -0.5 23 109-133 124-146 (282)
239 1um8_A ATP-dependent CLP prote 34.8 9.7 0.00033 40.1 0.6 18 115-132 72-89 (376)
240 1s5l_U Photosystem II 12 kDa e 34.7 21 0.00072 33.0 2.7 27 590-616 85-111 (134)
241 1sxj_B Activator 1 37 kDa subu 34.5 8.6 0.0003 38.7 0.1 15 118-132 45-59 (323)
242 3upu_A ATP-dependent DNA helic 34.5 14 0.00048 40.2 1.9 34 94-132 29-62 (459)
243 2qag_C Septin-7; cell cycle, c 34.5 12 0.0004 40.9 1.2 24 109-132 25-48 (418)
244 3q8k_A Flap endonuclease 1; he 34.3 15 0.00051 39.0 1.9 25 598-627 236-260 (341)
245 2r44_A Uncharacterized protein 34.0 6.4 0.00022 40.5 -1.0 16 117-132 48-63 (331)
246 2v1x_A ATP-dependent DNA helic 33.9 13 0.00046 42.1 1.6 25 106-132 52-76 (591)
247 1qvr_A CLPB protein; coiled co 33.9 6.4 0.00022 46.7 -1.1 42 83-133 168-209 (854)
248 2cvh_A DNA repair and recombin 33.6 12 0.0004 35.6 0.9 28 105-132 7-37 (220)
249 2a1j_A DNA repair endonuclease 33.5 13 0.00046 29.5 1.1 26 586-613 28-54 (63)
250 1dgs_A DNA ligase; AMP complex 33.3 25 0.00086 40.7 3.7 30 586-615 467-496 (667)
251 4a2p_A RIG-I, retinoic acid in 33.3 12 0.00042 40.7 1.1 24 107-132 16-39 (556)
252 3b85_A Phosphate starvation-in 33.2 11 0.00037 36.9 0.6 25 106-132 15-39 (208)
253 3hws_A ATP-dependent CLP prote 33.1 11 0.00037 39.6 0.6 18 115-132 51-68 (363)
254 2db3_A ATP-dependent RNA helic 33.1 13 0.00044 40.1 1.2 24 107-132 87-110 (434)
255 3u61_B DNA polymerase accessor 32.9 11 0.00038 38.5 0.6 18 115-132 48-65 (324)
256 3tr0_A Guanylate kinase, GMP k 32.7 11 0.00039 35.4 0.6 16 117-132 9-24 (205)
257 3u5c_S 40S ribosomal protein S 32.7 29 0.00098 32.6 3.4 46 591-642 27-73 (146)
258 1ypw_A Transitional endoplasmi 32.7 40 0.0014 39.7 5.5 51 81-132 200-255 (806)
259 4a74_A DNA repair and recombin 32.6 14 0.00046 35.3 1.2 28 105-132 12-42 (231)
260 1w36_D RECD, exodeoxyribonucle 32.4 11 0.00036 43.1 0.4 18 116-133 165-182 (608)
261 2kp7_A Crossover junction endo 32.2 42 0.0014 28.6 4.0 37 607-643 41-79 (87)
262 3tau_A Guanylate kinase, GMP k 32.0 13 0.00045 35.7 1.0 16 117-132 10-25 (208)
263 3im1_A Protein SNU246, PRE-mRN 31.7 48 0.0017 34.5 5.3 42 594-639 157-207 (328)
264 4b4t_H 26S protease regulatory 31.5 11 0.00039 41.7 0.4 49 82-131 206-259 (467)
265 3tbk_A RIG-I helicase domain; 31.4 14 0.00047 40.2 1.1 24 107-132 13-36 (555)
266 2qnr_A Septin-2, protein NEDD5 31.3 12 0.0004 38.7 0.5 23 110-132 13-35 (301)
267 2dr3_A UPF0273 protein PH0284; 31.3 14 0.00046 35.7 0.9 26 107-132 12-40 (247)
268 1kgd_A CASK, peripheral plasma 31.3 12 0.00042 35.0 0.6 16 117-132 7-22 (180)
269 1r6b_X CLPA protein; AAA+, N-t 31.1 12 0.00043 43.3 0.7 28 106-133 198-225 (758)
270 1ojl_A Transcriptional regulat 31.1 11 0.00039 38.7 0.4 18 114-131 24-41 (304)
271 1fuu_A Yeast initiation factor 30.8 7.5 0.00026 40.3 -1.1 24 107-132 52-75 (394)
272 4ag6_A VIRB4 ATPase, type IV s 30.8 11 0.00036 40.1 0.1 20 112-133 34-53 (392)
273 1ly1_A Polynucleotide kinase; 30.8 15 0.0005 33.6 1.0 15 117-131 4-18 (181)
274 1kea_A Possible G-T mismatches 30.7 58 0.002 32.1 5.5 56 586-642 68-135 (221)
275 1jr3_A DNA polymerase III subu 30.7 12 0.0004 38.8 0.3 18 115-132 38-55 (373)
276 2fwr_A DNA repair protein RAD2 30.6 13 0.00045 40.1 0.7 22 109-132 104-125 (472)
277 3sop_A Neuronal-specific septi 30.2 13 0.00043 37.9 0.5 19 114-132 1-19 (270)
278 3pxi_A Negative regulator of g 30.1 15 0.0005 42.8 1.1 42 83-133 178-219 (758)
279 1rz3_A Hypothetical protein rb 29.7 16 0.00054 34.9 1.1 19 114-132 21-39 (201)
280 1zp6_A Hypothetical protein AT 29.7 13 0.00044 34.6 0.4 17 116-132 10-26 (191)
281 3r8n_M 30S ribosomal protein S 29.3 36 0.0012 30.6 3.3 46 592-642 14-59 (114)
282 1qhx_A CPT, protein (chloramph 29.3 16 0.00055 33.5 1.0 15 117-131 5-19 (178)
283 1hv8_A Putative ATP-dependent 29.3 12 0.0004 38.2 0.0 24 108-132 38-61 (367)
284 1ye8_A Protein THEP1, hypothet 29.1 13 0.00044 35.3 0.3 15 118-132 3-17 (178)
285 4gl2_A Interferon-induced heli 28.9 16 0.00054 41.6 1.0 24 107-132 16-39 (699)
286 3a00_A Guanylate kinase, GMP k 28.9 13 0.00045 34.9 0.4 15 118-132 4-18 (186)
287 3trf_A Shikimate kinase, SK; a 28.7 17 0.00057 33.7 1.1 15 117-131 7-21 (185)
288 3arc_U Photosystem II 12 kDa e 28.5 27 0.00092 30.5 2.2 26 590-615 48-73 (97)
289 1e9r_A Conjugal transfer prote 28.3 13 0.00043 40.0 0.1 18 115-132 53-70 (437)
290 3sqw_A ATP-dependent RNA helic 28.3 18 0.00062 40.4 1.4 25 107-131 52-76 (579)
291 1lvg_A Guanylate kinase, GMP k 28.2 14 0.00047 35.4 0.3 15 118-132 7-21 (198)
292 3iij_A Coilin-interacting nucl 28.2 16 0.00055 33.8 0.8 16 117-132 13-28 (180)
293 2izo_A FEN1, flap structure-sp 28.1 21 0.00071 37.8 1.7 25 598-627 238-262 (346)
294 1rxw_A Flap structure-specific 28.0 22 0.00075 37.4 1.9 25 598-627 239-263 (336)
295 3iz6_M 40S ribosomal protein S 27.8 36 0.0012 32.2 3.1 47 590-642 24-71 (152)
296 2r8r_A Sensor protein; KDPD, P 27.7 14 0.00049 37.1 0.4 19 115-133 6-24 (228)
297 2orw_A Thymidine kinase; TMTK, 27.6 12 0.0004 35.7 -0.3 17 117-133 5-21 (184)
298 2ehv_A Hypothetical protein PH 27.5 15 0.00053 35.4 0.6 16 117-132 32-47 (251)
299 1ci4_A Protein (barrier-TO-aut 27.4 29 0.00099 29.9 2.2 43 594-640 18-64 (89)
300 2j41_A Guanylate kinase; GMP, 27.2 16 0.00055 34.2 0.6 16 117-132 8-23 (207)
301 2b8t_A Thymidine kinase; deoxy 27.2 15 0.00052 36.5 0.5 18 116-133 13-30 (223)
302 3e70_C DPA, signal recognition 27.2 23 0.00079 37.2 1.9 18 115-132 129-146 (328)
303 1yks_A Genome polyprotein [con 27.0 21 0.00072 38.7 1.6 21 110-132 5-25 (440)
304 2zj8_A DNA helicase, putative 26.9 51 0.0017 37.9 4.9 43 594-640 646-697 (720)
305 1rj9_A FTSY, signal recognitio 26.6 18 0.0006 37.6 0.8 17 116-132 103-119 (304)
306 2bdt_A BH3686; alpha-beta prot 26.6 17 0.00057 34.0 0.6 16 117-132 4-19 (189)
307 3b9q_A Chloroplast SRP recepto 26.4 17 0.00057 37.7 0.6 17 116-132 101-117 (302)
308 3lnc_A Guanylate kinase, GMP k 26.2 20 0.00068 34.8 1.1 16 117-132 29-44 (231)
309 1z3e_B DNA-directed RNA polyme 26.0 65 0.0022 26.5 4.0 31 587-617 34-64 (73)
310 1wp9_A ATP-dependent RNA helic 26.0 16 0.00054 38.4 0.3 23 108-133 19-41 (494)
311 1sxj_A Activator 1 95 kDa subu 25.9 17 0.0006 40.2 0.7 17 116-132 78-94 (516)
312 2ykg_A Probable ATP-dependent 25.9 21 0.00073 40.5 1.4 22 108-131 23-44 (696)
313 1znw_A Guanylate kinase, GMP k 25.8 17 0.0006 34.7 0.6 22 109-132 16-37 (207)
314 3lfu_A DNA helicase II; SF1 he 25.7 15 0.0005 41.5 0.0 19 115-133 22-40 (647)
315 1orn_A Endonuclease III; DNA r 25.7 77 0.0026 31.4 5.3 57 586-642 66-133 (226)
316 2xzm_M RPS18E; ribosome, trans 25.5 38 0.0013 32.0 2.9 46 592-643 28-74 (155)
317 1moz_A ARL1, ADP-ribosylation 25.0 22 0.00076 32.3 1.1 27 106-132 8-35 (183)
318 1kht_A Adenylate kinase; phosp 24.9 20 0.0007 32.9 0.9 15 117-131 5-19 (192)
319 1kag_A SKI, shikimate kinase I 24.8 21 0.0007 32.6 0.9 16 117-132 6-21 (173)
320 3cf2_A TER ATPase, transitiona 24.7 34 0.0012 40.5 2.9 74 82-156 201-296 (806)
321 1ul1_X Flap endonuclease-1; pr 24.6 33 0.0011 36.7 2.6 24 599-627 237-260 (379)
322 2dhr_A FTSH; AAA+ protein, hex 24.6 17 0.00059 40.5 0.3 16 117-132 66-81 (499)
323 2yhs_A FTSY, cell division pro 24.5 25 0.00086 39.4 1.6 17 116-132 294-310 (503)
324 3vaa_A Shikimate kinase, SK; s 24.3 23 0.00078 33.5 1.1 16 117-132 27-42 (199)
325 3fsp_A A/G-specific adenine gl 24.2 1E+02 0.0036 32.5 6.4 57 587-643 73-139 (369)
326 3j20_O 30S ribosomal protein S 24.1 42 0.0014 31.5 2.8 47 590-642 19-66 (148)
327 3uie_A Adenylyl-sulfate kinase 24.0 24 0.00083 33.4 1.2 19 114-132 24-42 (200)
328 3kb2_A SPBC2 prophage-derived 24.0 23 0.00079 31.9 1.0 15 117-131 3-17 (173)
329 2px0_A Flagellar biosynthesis 24.0 27 0.00094 35.9 1.7 18 116-133 106-123 (296)
330 3ory_A Flap endonuclease 1; hy 23.9 20 0.00067 38.4 0.6 25 598-627 255-279 (363)
331 2gk6_A Regulator of nonsense t 23.6 19 0.00064 41.1 0.4 17 117-133 197-213 (624)
332 2qen_A Walker-type ATPase; unk 23.5 17 0.00059 36.8 0.1 17 116-132 32-48 (350)
333 2gza_A Type IV secretion syste 23.3 18 0.00062 38.3 0.2 20 111-132 173-192 (361)
334 2v6i_A RNA helicase; membrane, 23.2 27 0.00094 37.6 1.6 16 117-132 4-19 (431)
335 2zts_A Putative uncharacterize 23.1 33 0.0011 32.9 2.1 27 105-131 17-46 (251)
336 3pxi_A Negative regulator of g 23.1 24 0.00082 41.0 1.2 16 117-132 523-538 (758)
337 3kta_A Chromosome segregation 23.1 20 0.00067 33.2 0.4 16 117-132 28-43 (182)
338 2ze6_A Isopentenyl transferase 23.0 24 0.00083 35.2 1.0 15 117-131 3-17 (253)
339 2pt7_A CAG-ALFA; ATPase, prote 23.0 19 0.00063 37.8 0.2 19 112-132 170-188 (330)
340 2i3b_A HCR-ntpase, human cance 22.9 20 0.00068 34.4 0.4 15 118-132 4-18 (189)
341 3n5n_X A/G-specific adenine DN 22.7 95 0.0033 32.1 5.5 55 587-642 83-149 (287)
342 1knq_A Gluconate kinase; ALFA/ 22.7 22 0.00076 32.6 0.6 17 116-132 9-25 (175)
343 1z6g_A Guanylate kinase; struc 22.6 20 0.00069 34.8 0.3 15 118-132 26-40 (218)
344 3t5d_A Septin-7; GTP-binding p 22.5 21 0.00073 35.8 0.5 21 112-132 5-25 (274)
345 3gfk_B DNA-directed RNA polyme 22.5 81 0.0028 26.4 4.0 31 587-617 41-71 (79)
346 1xx6_A Thymidine kinase; NESG, 22.4 18 0.00062 34.9 -0.1 17 117-133 10-26 (191)
347 3nbx_X ATPase RAVA; AAA+ ATPas 22.3 23 0.0008 39.5 0.8 24 107-132 35-58 (500)
348 1uf9_A TT1252 protein; P-loop, 22.2 30 0.001 32.2 1.4 20 112-131 5-24 (203)
349 1f2t_A RAD50 ABC-ATPase; DNA d 22.2 26 0.00087 32.1 0.9 15 118-132 26-40 (149)
350 2ce7_A Cell division protein F 22.0 21 0.00071 39.6 0.3 17 116-132 50-66 (476)
351 2rhm_A Putative kinase; P-loop 22.0 23 0.00078 32.8 0.6 16 116-131 6-21 (193)
352 1tev_A UMP-CMP kinase; ploop, 21.9 25 0.00085 32.4 0.8 15 117-131 5-19 (196)
353 2og2_A Putative signal recogni 21.9 23 0.00079 37.8 0.6 17 116-132 158-174 (359)
354 3iwf_A Transcription regulator 21.9 44 0.0015 29.3 2.4 46 597-642 13-59 (107)
355 3cm0_A Adenylate kinase; ATP-b 21.7 28 0.00094 32.1 1.1 15 117-131 6-20 (186)
356 2qor_A Guanylate kinase; phosp 21.5 26 0.00088 33.3 0.9 15 117-131 14-28 (204)
357 1y63_A LMAJ004144AAA protein; 21.5 26 0.00088 32.8 0.8 15 117-131 12-26 (184)
358 2xzl_A ATP-dependent helicase 21.4 23 0.00078 41.9 0.5 17 117-133 377-393 (802)
359 1c4o_A DNA nucleotide excision 21.3 41 0.0014 38.7 2.6 46 82-134 2-47 (664)
360 1r6b_X CLPA protein; AAA+, N-t 21.3 29 0.00099 40.2 1.4 17 116-132 489-505 (758)
361 2z83_A Helicase/nucleoside tri 21.2 30 0.001 37.6 1.4 15 117-131 23-37 (459)
362 2yvu_A Probable adenylyl-sulfa 21.2 36 0.0012 31.6 1.8 18 115-132 13-30 (186)
363 2vli_A Antibiotic resistance p 21.0 29 0.00099 31.8 1.1 15 117-131 7-21 (183)
364 1e6c_A Shikimate kinase; phosp 20.9 27 0.00092 31.7 0.8 15 117-131 4-18 (173)
365 1qvr_A CLPB protein; coiled co 20.8 29 0.00098 41.1 1.2 17 116-132 589-605 (854)
366 4a2q_A RIG-I, retinoic acid in 20.8 28 0.00096 40.7 1.1 25 106-132 256-280 (797)
367 2b6h_A ADP-ribosylation factor 20.8 37 0.0013 31.6 1.8 30 103-132 17-46 (192)
368 1uaa_A REP helicase, protein ( 20.8 22 0.00076 40.6 0.2 19 115-133 15-33 (673)
369 3k4g_A DNA-directed RNA polyme 20.6 81 0.0028 26.9 3.7 28 590-617 40-67 (86)
370 1w4r_A Thymidine kinase; type 20.6 28 0.00095 34.1 0.8 17 114-130 19-35 (195)
371 2va8_A SSO2462, SKI2-type heli 20.6 71 0.0024 36.5 4.4 31 592-626 655-685 (715)
372 4a2w_A RIG-I, retinoic acid in 20.4 26 0.00089 42.0 0.7 24 107-132 257-280 (936)
373 2o3f_A Putative HTH-type trans 20.4 42 0.0014 29.5 1.9 45 599-643 19-64 (111)
374 1v5w_A DMC1, meiotic recombina 20.2 35 0.0012 35.7 1.6 28 105-132 109-139 (343)
375 2bbw_A Adenylate kinase 4, AK4 20.1 26 0.0009 34.3 0.6 17 116-132 28-44 (246)
376 1lkx_A Myosin IE heavy chain; 20.1 29 0.001 40.4 1.0 22 112-133 91-112 (697)
No 1
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=2.5e-83 Score=691.45 Aligned_cols=325 Identities=35% Similarity=0.570 Sum_probs=265.7
Q ss_pred CCCeEEEEEcCCCCChhhhhhcCCCeeEEEEcCCCCcccCcceEEEecCCC--------CCCceeeeeceeeCCCCCcHh
Q 005372 25 SSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPD--------TIRSECYQLDSFFGQEDESVS 96 (699)
Q Consensus 25 ~~~VrV~vRvRP~~~~E~~~~~~~~~~~i~v~d~~~~~~~~~~~i~~~~~~--------~~~~~~F~FD~VF~~~~~sQ~ 96 (699)
.++|||+||+||+++.|...+ ...|+.+.+... ++.+.++. ....+.|.||+||++++ +|+
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~---~~~~v~~~~~~~-------~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~-~Q~ 71 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETREN---ALNIIRMDEASA-------QVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTS-CNY 71 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTT---CCBCEEEEGGGT-------EEEECC--------------EEEECSEEECTTC-CHH
T ss_pred CCCeEEEEEeCCCChhhhccC---CceEEEEcCCCC-------EEEEeeccccccccccCCCceEeeCCEEECCCc-chh
Confidence 479999999999999997654 445666654321 33333332 23357899999999876 889
Q ss_pred HHHHhhccchhhhhcCCCCEEEEeeccCCCCCcceeccCCCCCCchHHHHHHHHHhhhc----CCceeEEEEEEEeccee
Q 005372 97 KIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMSKILSICQS----TGSTAEISYYEVYMDRC 172 (699)
Q Consensus 97 ~Vf~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTm~G~~~~~GIipral~~LF~~~~~----~~~~v~vS~~EIYnE~v 172 (699)
+||+.+++|+|+++++|||+||||||||||||||||+|+.+++|||||++++||+.++. ..+.|.+||+|||||++
T Consensus 72 ~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i 151 (350)
T 2vvg_A 72 GIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEI 151 (350)
T ss_dssp HHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEE
T ss_pred HHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999999999999999998863 34789999999999999
Q ss_pred eeccCCCccceeeeecCCCCeEecCCEEEEeCChhHHHHHHHHHHhcCcccccCCCCCCCCceEEEEEEEEEeecCC-CC
Q 005372 173 YDLLEVKTKEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDD-SK 251 (699)
Q Consensus 173 ~DLL~~~~~~l~i~ed~~~~v~v~gLsev~V~S~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~-~~ 251 (699)
+|||++ ...+.+++++.++++|.|++++.|.+++|++++|..|..+|++++|.+|+.|||||+||+|+|++..... ..
T Consensus 152 ~DLL~~-~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~ 230 (350)
T 2vvg_A 152 RDLIKN-NTKLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKE 230 (350)
T ss_dssp EETTTT-EEEECEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC----C
T ss_pred EEcccC-CcCceeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeeccCCCc
Confidence 999984 4579999999999999999999999999999999999999999999999999999999999998865433 23
Q ss_pred ceEEEEEEEEEcCCCcc---cccchhhHHHHHhhhhhHHHHHHHHHHhcCCCCCCCCCCChhhhhcccccCCCceeEEEE
Q 005372 252 AALTGKLNLIDLADNRR---TCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDSLGGTSHALMVA 328 (699)
Q Consensus 252 ~~~~skL~fVDLAGser---t~~~g~rl~E~~~INkSL~aLg~VI~aL~~~~~~IPYRdSKLTrLLqdsLgGnskt~mI~ 328 (699)
....|+|+||||||+|| ++..|.|++|+.+||+||++||+||.+|.+++.||||||||||+||||+||||++|+||+
T Consensus 231 ~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~ 310 (350)
T 2vvg_A 231 VIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLGGNSKTLMCA 310 (350)
T ss_dssp EEEEEEEEEEECCCCCC---------------CTTHHHHHHHHHHHHHHHTCSSCCGGGCHHHHHTTTTTTSSSEEEEEE
T ss_pred cEEEEEEEEEeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCCCccccHHHHHHHHhcCCCccEEEEE
Confidence 34679999999999998 556789999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCC--ChhhhHHHHHHHHHhhhccccCCCcccc
Q 005372 329 CLNPG--EYQESVHTVSLAARSRHISNTLPSAQKV 361 (699)
Q Consensus 329 ~VSP~--~~~ETlsTL~fA~rar~I~N~~~~~~~~ 361 (699)
||||+ +++||++||+||+|+|+|+|.+..|...
T Consensus 311 ~isP~~~~~~ETl~TL~fA~rak~i~n~~~~n~~~ 345 (350)
T 2vvg_A 311 NISPASTNYDETMSTLRYADRAKQIKNKPRINEDP 345 (350)
T ss_dssp EECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCBSC
T ss_pred EeCCccccHHHHHHHHHHHHHHhhccccceecCCc
Confidence 99997 5899999999999999999988877653
No 2
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-83 Score=700.84 Aligned_cols=330 Identities=38% Similarity=0.639 Sum_probs=253.9
Q ss_pred CCCCCCCeEEEEEcCCCCChhhhhhcCCCeeEEEEcCCCCcccCcceEEEecCC-CCCCceeeeeceeeCCCCCcHhHHH
Q 005372 21 STSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDP-DTIRSECYQLDSFFGQEDESVSKIF 99 (699)
Q Consensus 21 ~~~~~~~VrV~vRvRP~~~~E~~~~~~~~~~~i~v~d~~~~~~~~~~~i~~~~~-~~~~~~~F~FD~VF~~~~~sQ~~Vf 99 (699)
.....++|+|+|||||+++.|.... ...|+...+... +.+.+. .......|.||+||++++ +|++||
T Consensus 16 ~~~~~~~irV~vRvRP~~~~E~~~~---~~~~v~~~~~~~--------~~i~~~~~~~~~~~f~FD~Vf~~~~-tQ~~Vy 83 (388)
T 3bfn_A 16 FQGPPARVRVAVRLRPFVDGTAGAS---DPPCVRGMDSCS--------LEIANWRNHQETLKYQFDAFYGERS-TQQDIY 83 (388)
T ss_dssp SSSCCCCCEEEEEECCCC----------------------------------------CEEEEECSEEECTTC-CHHHHH
T ss_pred ccCCCCCEEEEEECCCCChhhhccC---CCceEEecCCCe--------EEEecCCCCCCeeEEEcceEecCCC-CHhHHH
Confidence 3445689999999999999986543 345666544432 112221 122356899999999875 889999
Q ss_pred HhhccchhhhhcCCCCEEEEeeccCCCCCcceeccCCCCCCchHHHHHHHHHhhhc-------CCceeEEEEEEEeccee
Q 005372 100 YSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMSKILSICQS-------TGSTAEISYYEVYMDRC 172 (699)
Q Consensus 100 ~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTm~G~~~~~GIipral~~LF~~~~~-------~~~~v~vS~~EIYnE~v 172 (699)
+..++|+|+++++|||+||||||||||||||||+|+.+++|||||++++||+.++. ..+.|++||+|||||+|
T Consensus 84 ~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i 163 (388)
T 3bfn_A 84 AGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKV 163 (388)
T ss_dssp HHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEE
T ss_pred HHHHHHHHHHhhcCceeeEeeecCCCCCCCeEeecCccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCee
Confidence 99999999999999999999999999999999999999999999999999998753 24689999999999999
Q ss_pred eeccCCCccceeeeecCCCCeEecCCEEEEeCChhHHHHHHHHHHhcCcccccCCCCCCCCceEEEEEEEEEeecCCCCc
Q 005372 173 YDLLEVKTKEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKA 252 (699)
Q Consensus 173 ~DLL~~~~~~l~i~ed~~~~v~v~gLsev~V~S~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~~~~ 252 (699)
+|||++....+.+++++.++++|.||+++.|.|++|++++|..|..+|++++|.||+.|||||+||+|+|.+........
T Consensus 164 ~DLL~~~~~~l~ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~ 243 (388)
T 3bfn_A 164 LDLLDPASGDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFR 243 (388)
T ss_dssp EESSSCSSCBCCCEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESSTTCC
T ss_pred eehhccCCCCceEEEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCCCCc
Confidence 99999988899999999999999999999999999999999999999999999999999999999999999876554455
Q ss_pred eEEEEEEEEEcCCCcc---cccchhhHHHHHhhhhhHHHHHHHHHHhcCCCCCCCCCCChhhhhcccccCCCceeEEEEE
Q 005372 253 ALTGKLNLIDLADNRR---TCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDSLGGTSHALMVAC 329 (699)
Q Consensus 253 ~~~skL~fVDLAGser---t~~~g~rl~E~~~INkSL~aLg~VI~aL~~~~~~IPYRdSKLTrLLqdsLgGnskt~mI~~ 329 (699)
...|+|+||||||+|| +++.|.|++|+..||+||++||+||.+|++++.||||||||||+||||+||||++|+||+|
T Consensus 244 ~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSkLTrlLqdsLgGnskT~mIa~ 323 (388)
T 3bfn_A 244 QREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSAHSILIAN 323 (388)
T ss_dssp EEEEEEEEEECCCTTC--------------CCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTTTSSSTTCEEEEEEE
T ss_pred eeEEEEEEEECCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCCCCCcCcccHHHHHHHHhhCCCccEEEEEE
Confidence 6789999999999997 5678899999999999999999999999999999999999999999999999999999999
Q ss_pred eCCC--ChhhhHHHHHHHHHhhhccccCCCccccC
Q 005372 330 LNPG--EYQESVHTVSLAARSRHISNTLPSAQKVQ 362 (699)
Q Consensus 330 VSP~--~~~ETlsTL~fA~rar~I~N~~~~~~~~~ 362 (699)
|||+ +++||++||+||+||++|+|.+..|...+
T Consensus 324 iSP~~~~~~ETlsTLrfA~rak~I~n~p~~n~~~~ 358 (388)
T 3bfn_A 324 IAPERRFYLDTVSALNFAARSKEVINRPFTNESLQ 358 (388)
T ss_dssp ECCSGGGHHHHHHHHHHHCSEEEEC----------
T ss_pred ECCccccHHHHHHHHHHHHHHhhCcCcCcccCCCC
Confidence 9997 58999999999999999999877665543
No 3
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=1.8e-82 Score=703.22 Aligned_cols=328 Identities=33% Similarity=0.549 Sum_probs=272.8
Q ss_pred CCCCeEEEEEcCCCCChhhhhhcCCCeeEEEEcCCCCcccCcceEEEecCC------------CCCCceeeeeceeeCCC
Q 005372 24 TSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDP------------DTIRSECYQLDSFFGQE 91 (699)
Q Consensus 24 ~~~~VrV~vRvRP~~~~E~~~~~~~~~~~i~v~d~~~~~~~~~~~i~~~~~------------~~~~~~~F~FD~VF~~~ 91 (699)
..++|||+|||||++++|...+ ..+++.+.+... ..++..... .....+.|.||+||+++
T Consensus 36 ~~~~vrV~vRvRP~~~~E~~~~---~~~~v~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~ 107 (443)
T 2owm_A 36 PGANVRVVVRVRAFLPRELERN---AECIVEMDPATE-----RTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSH 107 (443)
T ss_dssp CCEECEEEEEEECCCHHHHHTT---CCCCEEECSSSC-----EEEECCCC---------------CCCEEEECSEEEEES
T ss_pred CCCCeEEEEEeCCCChHHhhcC---CceEEEEcCCCc-----cEEEecCCCcccccccccccccccCCceEecCeEeCCC
Confidence 4579999999999999997654 345555543321 112221110 11235789999999864
Q ss_pred ------CCcHhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCcceeccCCCCCCchHHHHHHHHHhhhc-------CCc
Q 005372 92 ------DESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMSKILSICQS-------TGS 158 (699)
Q Consensus 92 ------~~sQ~~Vf~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTm~G~~~~~GIipral~~LF~~~~~-------~~~ 158 (699)
..+|++||+.+++|+|+++++|||+||||||||||||||||+|+.+++|||||++++||+.++. ..+
T Consensus 108 ~~~~~~~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIipr~~~~lF~~i~~~~~~~~~~~~ 187 (443)
T 2owm_A 108 NTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISY 187 (443)
T ss_dssp CTTSTTCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCHHHHHHHHHHHHHHHTTTTSTTCEE
T ss_pred CcCCccCCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCchHHHHHHHHHHHHHhhhcccCCceE
Confidence 3589999999999999999999999999999999999999999999999999999999998753 347
Q ss_pred eeEEEEEEEecceeeeccCCC-----ccceeeeecCCCCeEecCCEEEEeCChhHHHHHHHHHHhcCcccccCCCCCCCC
Q 005372 159 TAEISYYEVYMDRCYDLLEVK-----TKEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSR 233 (699)
Q Consensus 159 ~v~vS~~EIYnE~v~DLL~~~-----~~~l~i~ed~~~~v~v~gLsev~V~S~ee~~~ll~~g~~~R~~~sT~~N~~SSR 233 (699)
.|++||+|||||+|||||++. ...+.++|++.++++|.||+++.|.|++|++++|..|..+|++++|.||+.|||
T Consensus 188 ~V~vS~lEIYnE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSR 267 (443)
T 2owm_A 188 NVKVSYFEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSR 267 (443)
T ss_dssp EEEEEEEEEETTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCTT
T ss_pred EEEEEEEEEECCEeeEccCccccCCcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCccCC
Confidence 899999999999999999873 235899999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEEEEeecC---CCCceEEEEEEEEEcCCCcc---cccchhhHHHHHhhhhhHHHHHHHHHHhcCCC-------
Q 005372 234 SHGVLVISVSTLLGD---DSKAALTGKLNLIDLADNRR---TCNEGIRLLESAKINQSLFALSNVIHALNNNK------- 300 (699)
Q Consensus 234 SH~If~I~V~~~~~~---~~~~~~~skL~fVDLAGser---t~~~g~rl~E~~~INkSL~aLg~VI~aL~~~~------- 300 (699)
||+||+|+|.+...+ +......|+|+||||||+|| +++.|.|++|+.+||+||++||+||.+|++++
T Consensus 268 SH~Ifti~v~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~~ 347 (443)
T 2owm_A 268 SHAVFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPS 347 (443)
T ss_dssp EEEEEEEEEEEEC-------CCEEEEEEEEEECCCCCC--------------CCSSHHHHHHHHHHHHHCC---------
T ss_pred CeEEEEEEEEEeecccCCCCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHHHHHHHHHHhcccccccccc
Confidence 999999999875432 23345679999999999998 56678999999999999999999999998743
Q ss_pred ---------------CCCCCCCChhhhhcccccCCCceeEEEEEeCCCChhhhHHHHHHHHHhhhccccCCCcc
Q 005372 301 ---------------PRVPYRESKLTRILQDSLGGTSHALMVACLNPGEYQESVHTVSLAARSRHISNTLPSAQ 359 (699)
Q Consensus 301 ---------------~~IPYRdSKLTrLLqdsLgGnskt~mI~~VSP~~~~ETlsTL~fA~rar~I~N~~~~~~ 359 (699)
.|||||||||||||||+||||++|+||+||||++|+||++||+||+|||+|+|.+.+|+
T Consensus 348 ~~~~~g~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~~~~ETlsTLrfA~rak~I~n~~~vN~ 421 (443)
T 2owm_A 348 SPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPTDYDETLSTLRYADQAKRIRTRAVVNQ 421 (443)
T ss_dssp ----------------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSSCHHHHHHHHHHHHHHTTCEECCCCCC
T ss_pred cccccccccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccccHHHHHHHHHHHHHHhhccccceecc
Confidence 38999999999999999999999999999999999999999999999999999888776
No 4
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=2e-82 Score=684.51 Aligned_cols=323 Identities=31% Similarity=0.483 Sum_probs=279.0
Q ss_pred CCCCeEEEEEcCCCCChhhhhhcCCCeeEEEEcCCCCcccCcceEEEecCCCCCCceeeeeceeeCCCCCcHhHHHHhhc
Q 005372 24 TSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSFFGQEDESVSKIFYSEV 103 (699)
Q Consensus 24 ~~~~VrV~vRvRP~~~~E~~~~~~~~~~~i~v~d~~~~~~~~~~~i~~~~~~~~~~~~F~FD~VF~~~~~sQ~~Vf~~~v 103 (699)
+.++|+|+|||||++..|...+. ..++.+...+. .+...+ ..+.|.||+||++++ +|++||+.++
T Consensus 2 e~~~i~V~vRvRP~~~~E~~~~~---~~~v~~~~~~~-------~i~~~~----~~~~F~FD~Vf~~~~-tQ~~Vy~~~~ 66 (349)
T 1t5c_A 2 EEGAVAVCVRVRPLNSREESLGE---TAQVYWKTDNN-------VIYQVD----GSKSFNFDRVFHGNE-TTKNVYEEIA 66 (349)
T ss_dssp -CCCEEEEEEECCCSCSSCTTTT---CCCCCEEEETT-------EEEETT----SSCEEECSCEECTTS-CHHHHHHHTT
T ss_pred CCCCEEEEEECCCCChhhhccCC---CcEEEEeCCCC-------eEEECC----CCeEEECCEEECCCC-CHHHHHHHHH
Confidence 46899999999999999865432 22222222111 222222 235799999999886 8899999999
Q ss_pred cchhhhhcCCCCEEEEeeccCCCCCcceeccCCCCCCchHHHHHHHHHhhhc---CCceeEEEEEEEecceeeeccCCCc
Q 005372 104 NPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMSKILSICQS---TGSTAEISYYEVYMDRCYDLLEVKT 180 (699)
Q Consensus 104 ~plV~~vl~G~N~tIfAYGqTGSGKTyTm~G~~~~~GIipral~~LF~~~~~---~~~~v~vS~~EIYnE~v~DLL~~~~ 180 (699)
+|+|+++++|||+||||||||||||||||+|+++++|||||++++||+.++. ..+.|++||+|||||+|+|||++..
T Consensus 67 ~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 146 (349)
T 1t5c_A 67 APIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQ 146 (349)
T ss_dssp HHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSSBCHHHHHHHHHHHHGGGCTTEEEEEEEEEEEEETTEEEESSSSSC
T ss_pred HHHHHHHHcCCccceeeecCCCCCCCeEEecCCCCCchHHHHHHHHHHHHHhCcCCcEEEEEEEEEEeCCEEEEccCCCC
Confidence 9999999999999999999999999999999999999999999999998875 3478999999999999999998653
Q ss_pred --cceeeeecCCCCeEecCCEEEEeCChhHHHHHHHHHHhcCcccccCCCCCCCCceEEEEEEEEEeecCC----CCceE
Q 005372 181 --KEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDD----SKAAL 254 (699)
Q Consensus 181 --~~l~i~ed~~~~v~v~gLsev~V~S~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~----~~~~~ 254 (699)
.++.+++++.++++|.|++++.|.|++|++++|..|.++|++++|.||+.|||||+||+|+|++..... .+...
T Consensus 147 ~~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~ 226 (349)
T 1t5c_A 147 KMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVK 226 (349)
T ss_dssp TTCCEEEEETTTTEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEE
T ss_pred CCCCceEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEE
Confidence 579999999999999999999999999999999999999999999999999999999999998865432 23456
Q ss_pred EEEEEEEEcCCCcc---cccchhhHHHHHhhhhhHHHHHHHHHHhcCCC--CCCCCCCChhhhhcccccCCCceeEEEEE
Q 005372 255 TGKLNLIDLADNRR---TCNEGIRLLESAKINQSLFALSNVIHALNNNK--PRVPYRESKLTRILQDSLGGTSHALMVAC 329 (699)
Q Consensus 255 ~skL~fVDLAGser---t~~~g~rl~E~~~INkSL~aLg~VI~aL~~~~--~~IPYRdSKLTrLLqdsLgGnskt~mI~~ 329 (699)
.|+|+||||||+|| ++..|.|++|+..||+||++||+||.+|++++ .|||||||||||||||+||||++|+||+|
T Consensus 227 ~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~ 306 (349)
T 1t5c_A 227 VSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICT 306 (349)
T ss_dssp EEEEEEEECCCGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSEEEEEEE
T ss_pred EEEEEEEECCCCccccccCCccccchhhhHHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCCCceEEEEEE
Confidence 79999999999998 45678999999999999999999999998865 69999999999999999999999999999
Q ss_pred eCCCChhhhHHHHHHHHHhhhccccCCCcccc
Q 005372 330 LNPGEYQESVHTVSLAARSRHISNTLPSAQKV 361 (699)
Q Consensus 330 VSP~~~~ETlsTL~fA~rar~I~N~~~~~~~~ 361 (699)
|||.+++||++||+||+|||+|+|.+.+|...
T Consensus 307 isP~~~~ETlsTL~fA~rak~I~n~~~vn~~~ 338 (349)
T 1t5c_A 307 ITPVSFDETLTALQFASTAKYMKNTPYVNEVS 338 (349)
T ss_dssp ECTTCSHHHHHHHHHHHHHTTCCCCCCCCEEC
T ss_pred eCCCCHHHHHHHHHHHHHHhhcccCceeccCC
Confidence 99999999999999999999999988877654
No 5
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=1.4e-82 Score=688.97 Aligned_cols=327 Identities=34% Similarity=0.547 Sum_probs=276.6
Q ss_pred CCCCCCCCeEEEEEcCCCCChhhhhhcCCCeeEEEEcCCCCcccCcceEEEecCCCCCCceeeeeceeeCCCCCcHhHHH
Q 005372 20 NSTSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSFFGQEDESVSKIF 99 (699)
Q Consensus 20 ~~~~~~~~VrV~vRvRP~~~~E~~~~~~~~~~~i~v~d~~~~~~~~~~~i~~~~~~~~~~~~F~FD~VF~~~~~sQ~~Vf 99 (699)
+..+..++|+|+|||||+++.|...+ ...++.+.+.. +..++.+. .+.|.||+||++++ +|++||
T Consensus 5 ~~~~~~~~i~V~vRvRP~~~~E~~~~---~~~~v~~~~~~-----~~~~i~~~------~~~f~FD~Vf~~~~-~Q~~Vy 69 (365)
T 2y65_A 5 REIPAEDSIKVVCRFRPLNDSEEKAG---SKFVVKFPNNV-----EENCISIA------GKVYLFDKVFKPNA-SQEKVY 69 (365)
T ss_dssp ---CCEEECEEEEEECCCCHHHHHTT---CCBCEECCSSS-----TTCEEEET------TEEEECSEEECTTC-CHHHHH
T ss_pred ccCCCCCCeEEEEEcCcCChhHhccC---CceEEEeCCCC-----CCcEEEEC------CEEEeCceEecCCC-CHHHHH
Confidence 45556789999999999999997654 34455544321 12233332 35799999999875 889999
Q ss_pred HhhccchhhhhcCCCCEEEEeeccCCCCCcceeccCC---CCCCchHHHHHHHHHhhhc----CCceeEEEEEEEeccee
Q 005372 100 YSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSE---ERPGLMPLAMSKILSICQS----TGSTAEISYYEVYMDRC 172 (699)
Q Consensus 100 ~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTm~G~~---~~~GIipral~~LF~~~~~----~~~~v~vS~~EIYnE~v 172 (699)
+.+++|+|+++++|||+||||||||||||||||+|.. .++|||||++++||+.++. ..+.|++||+|||||+|
T Consensus 70 ~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i 149 (365)
T 2y65_A 70 NEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKI 149 (365)
T ss_dssp HHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEE
T ss_pred HHhhhhHHHHHhCCCceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCee
Confidence 9999999999999999999999999999999999974 3569999999999998864 34789999999999999
Q ss_pred eeccCCCccceeeeecCCCCeEecCCEEEEeCChhHHHHHHHHHHhcCcccccCCCCCCCCceEEEEEEEEEeecCCCCc
Q 005372 173 YDLLEVKTKEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKA 252 (699)
Q Consensus 173 ~DLL~~~~~~l~i~ed~~~~v~v~gLsev~V~S~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~~~~ 252 (699)
+|||++....+.+++++.++++|.|++++.|.|++|++++|..|..+|++++|.+|+.|||||+||+|+|.+.... ...
T Consensus 150 ~DLL~~~~~~l~i~e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-~~~ 228 (365)
T 2y65_A 150 RDLLDVSKVNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLE-NQK 228 (365)
T ss_dssp EETTCTTCCSBCEEECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETT-TCC
T ss_pred eecccCCcCCceEEECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecC-CCC
Confidence 9999988889999999999999999999999999999999999999999999999999999999999999987643 344
Q ss_pred eEEEEEEEEEcCCCcc---cccchhhHHHHHhhhhhHHHHHHHHHHhcCC-CCCCCCCCChhhhhcccccCCCceeEEEE
Q 005372 253 ALTGKLNLIDLADNRR---TCNEGIRLLESAKINQSLFALSNVIHALNNN-KPRVPYRESKLTRILQDSLGGTSHALMVA 328 (699)
Q Consensus 253 ~~~skL~fVDLAGser---t~~~g~rl~E~~~INkSL~aLg~VI~aL~~~-~~~IPYRdSKLTrLLqdsLgGnskt~mI~ 328 (699)
...|+|+||||||+|| ++..|.|++|+.+||+||++||+||.+|+++ +.||||||||||+||||+||||++|+||+
T Consensus 229 ~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~ 308 (365)
T 2y65_A 229 KLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVI 308 (365)
T ss_dssp EEEEEEEEEECCCCCC----------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEE
T ss_pred EeEEEEEEEECCCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEE
Confidence 5789999999999998 5667899999999999999999999999886 57999999999999999999999999999
Q ss_pred EeCCC--ChhhhHHHHHHHHHhhhccccCCCccccC
Q 005372 329 CLNPG--EYQESVHTVSLAARSRHISNTLPSAQKVQ 362 (699)
Q Consensus 329 ~VSP~--~~~ETlsTL~fA~rar~I~N~~~~~~~~~ 362 (699)
||||+ +++||++||+||+||++|+|.+..|....
T Consensus 309 ~isP~~~~~~ETl~TL~fA~rak~I~n~~~~n~~~~ 344 (365)
T 2y65_A 309 CCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELT 344 (365)
T ss_dssp EECCBGGGHHHHHHHHHHHHHHTTCEEECCCEEECC
T ss_pred EecCccCCHHHHHHHHHHHHHHhcccCcceeCCCCC
Confidence 99997 58999999999999999999888776543
No 6
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=1.8e-82 Score=688.88 Aligned_cols=332 Identities=36% Similarity=0.542 Sum_probs=278.8
Q ss_pred CCCCCCCCCCeEEEEEcCCCCChhhhhhcCCCeeEEEEcCCCCcccCcceEEEecCCCC---CCceeeeeceeeCCCCCc
Q 005372 18 IPNSTSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDT---IRSECYQLDSFFGQEDES 94 (699)
Q Consensus 18 ~~~~~~~~~~VrV~vRvRP~~~~E~~~~~~~~~~~i~v~d~~~~~~~~~~~i~~~~~~~---~~~~~F~FD~VF~~~~~s 94 (699)
.+......++|||+|||||+++.|...+ ...|+.+..... ++.+.++.. ...+.|.||+||++++ +
T Consensus 13 ~~~~~~~~~~irV~vRvRP~~~~E~~~~---~~~~v~~~~~~~-------~v~v~~~~~~~~~~~~~F~FD~Vf~~~~-~ 81 (372)
T 3b6u_A 13 NLYFQGSSESVRVVVRCRPMNGKEKAAS---YDKVVDVDVKLG-------QVSVKNPKGTAHEMPKTFTFDAVYDWNA-K 81 (372)
T ss_dssp --------CBCEEEEEECCCCHHHHHTT---CCBCEEEETTTT-------EEEECCTTCTTTCCCEEEECSEEECTTC-C
T ss_pred cCccCCCCCCeEEEEEcCCCChhhhccC---CceEEEEeCCCC-------EEEEECCCCCCCCCceEEEcCeEeCCcC-c
Confidence 3445566799999999999999997654 345666644322 344544432 3457899999999876 8
Q ss_pred HhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCcceeccCC---CCCCchHHHHHHHHHhhhc---CCceeEEEEEEEe
Q 005372 95 VSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSE---ERPGLMPLAMSKILSICQS---TGSTAEISYYEVY 168 (699)
Q Consensus 95 Q~~Vf~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTm~G~~---~~~GIipral~~LF~~~~~---~~~~v~vS~~EIY 168 (699)
|++||+.+++|+|+++++|||+||||||||||||||||+|.. +++|||||++++||+.++. ..+.|++||+|||
T Consensus 82 Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIY 161 (372)
T 3b6u_A 82 QFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIY 161 (372)
T ss_dssp HHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHTCSSCEEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhhccCCceEEEEEEEEEe
Confidence 899999999999999999999999999999999999999975 4569999999999998864 4578999999999
Q ss_pred cceeeeccCCCc-cceeeeecCCCCeEecCCEEEEeCChhHHHHHHHHHHhcCcccccCCCCCCCCceEEEEEEEEEeec
Q 005372 169 MDRCYDLLEVKT-KEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLG 247 (699)
Q Consensus 169 nE~v~DLL~~~~-~~l~i~ed~~~~v~v~gLsev~V~S~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~ 247 (699)
||+|+|||++.. ..+.++++++++++|.||+++.|.|++|++++|..|..+|++++|.||+.|||||+||+|+|.+...
T Consensus 162 nE~i~DLL~~~~~~~l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~ 241 (372)
T 3b6u_A 162 QEEIRDLLSKDQTKRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEV 241 (372)
T ss_dssp TTEEEETTSSCTTCCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-
T ss_pred CCEEEECCCCCCCCCceEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeec
Confidence 999999998764 5799999999999999999999999999999999999999999999999999999999999987643
Q ss_pred --CCCCceEEEEEEEEEcCCCcc---cccchhhHHHHHhhhhhHHHHHHHHHHhcCCC-CCCCCCCChhhhhcccccCCC
Q 005372 248 --DDSKAALTGKLNLIDLADNRR---TCNEGIRLLESAKINQSLFALSNVIHALNNNK-PRVPYRESKLTRILQDSLGGT 321 (699)
Q Consensus 248 --~~~~~~~~skL~fVDLAGser---t~~~g~rl~E~~~INkSL~aLg~VI~aL~~~~-~~IPYRdSKLTrLLqdsLgGn 321 (699)
++......|+|+||||||+|| ++..|.|++|+..||+||++||+||.+|++++ .||||||||||+||||+||||
T Consensus 242 ~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGn 321 (372)
T 3b6u_A 242 GLDGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGN 321 (372)
T ss_dssp ----CCCEEEEEEEEEECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTSS
T ss_pred CCCCCcceEEEEEEEEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHHhcCCC
Confidence 233455689999999999998 55678999999999999999999999998865 699999999999999999999
Q ss_pred ceeEEEEEeCCC--ChhhhHHHHHHHHHhhhccccCCCccc
Q 005372 322 SHALMVACLNPG--EYQESVHTVSLAARSRHISNTLPSAQK 360 (699)
Q Consensus 322 skt~mI~~VSP~--~~~ETlsTL~fA~rar~I~N~~~~~~~ 360 (699)
++|+||+||||+ +++||++||+||+|||+|+|.+..|..
T Consensus 322 skt~mIa~vsP~~~~~~ETlsTLrfA~rak~I~n~~~~n~~ 362 (372)
T 3b6u_A 322 AKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNED 362 (372)
T ss_dssp SEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCC-
T ss_pred ccEEEEEEeCCcccCHHHHHHHHHHHHHHhhccccceecCC
Confidence 999999999998 589999999999999999997766643
No 7
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=9.2e-82 Score=680.74 Aligned_cols=326 Identities=34% Similarity=0.541 Sum_probs=290.5
Q ss_pred CCCCCeEEEEEcCCCCChhhhhhcCCCeeEEEEcCCCCcccCcceEEEecCCCCCCceeeeeceeeCCCCCcHhHHHHhh
Q 005372 23 STSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSFFGQEDESVSKIFYSE 102 (699)
Q Consensus 23 ~~~~~VrV~vRvRP~~~~E~~~~~~~~~~~i~v~d~~~~~~~~~~~i~~~~~~~~~~~~F~FD~VF~~~~~sQ~~Vf~~~ 102 (699)
+..++|||+|||||+++.|...+ ..+|+.+.+... +.+... ...+.|.||+||++++ +|++||+..
T Consensus 3 ~~~~~i~V~vRvRP~~~~E~~~~---~~~~v~~~~~~~--------~~~~~~--~~~~~f~FD~Vf~~~~-~Q~~Vy~~~ 68 (355)
T 1goj_A 3 SSANSIKVVARFRPQNRVEIESG---GQPIVTFQGPDT--------CTVDSK--EAQGSFTFDRVFDMSC-KQSDIFDFS 68 (355)
T ss_dssp CSSCBCEEEEEECCCCHHHHTTT---CCBCEEECSTTE--------EEECST--TCCEEEECSEEECTTC-CHHHHHHHH
T ss_pred CCCCCeEEEEECCCCChHHhhcC---CceEEEEcCCCe--------EEEccC--CCccEEeeCeEECCCC-ccHHHHHHH
Confidence 34689999999999999997654 455677655432 222222 2356899999999885 889999999
Q ss_pred ccchhhhhcCCCCEEEEeeccCCCCCcceeccC----CCCCCchHHHHHHHHHhhhc----CCceeEEEEEEEecceeee
Q 005372 103 VNPLIPGIFHGRNATVFAYGATGSGKTYTMQGS----EERPGLMPLAMSKILSICQS----TGSTAEISYYEVYMDRCYD 174 (699)
Q Consensus 103 v~plV~~vl~G~N~tIfAYGqTGSGKTyTm~G~----~~~~GIipral~~LF~~~~~----~~~~v~vS~~EIYnE~v~D 174 (699)
++|+|+++++|||+||||||||||||||||+|+ .+++|||||++++||+.+.. ..+.|++||+|||||+|||
T Consensus 69 ~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~D 148 (355)
T 1goj_A 69 IKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRD 148 (355)
T ss_dssp THHHHHHHTTTCCEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHHhCCCcceEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEE
Confidence 999999999999999999999999999999996 35689999999999998754 3478999999999999999
Q ss_pred ccCCCccceeeeecCCCCeEecCCEEEEeCChhHHHHHHHHHHhcCcccccCCCCCCCCceEEEEEEEEEeecCCCCceE
Q 005372 175 LLEVKTKEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAAL 254 (699)
Q Consensus 175 LL~~~~~~l~i~ed~~~~v~v~gLsev~V~S~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~~~~~~ 254 (699)
||++....+.+++++.++++|.|++++.|.|++|++++|..|..+|++++|.+|..|||||+||+|+|.+.... .+...
T Consensus 149 LL~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-~~~~~ 227 (355)
T 1goj_A 149 LLAPQNDNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVE-TGSAK 227 (355)
T ss_dssp TTSTTCCSCCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETT-TTEEE
T ss_pred cccCccCCceeEEcCCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccC-CCcee
Confidence 99998888999999999999999999999999999999999999999999999999999999999999987643 34456
Q ss_pred EEEEEEEEcCCCcc---cccchhhHHHHHhhhhhHHHHHHHHHHhcCC-CCCCCCCCChhhhhcccccCCCceeEEEEEe
Q 005372 255 TGKLNLIDLADNRR---TCNEGIRLLESAKINQSLFALSNVIHALNNN-KPRVPYRESKLTRILQDSLGGTSHALMVACL 330 (699)
Q Consensus 255 ~skL~fVDLAGser---t~~~g~rl~E~~~INkSL~aLg~VI~aL~~~-~~~IPYRdSKLTrLLqdsLgGnskt~mI~~V 330 (699)
.|+|+||||||+|| ++..|.+++|+.+||+||++||+||.+|+++ ..|||||||||||||||+||||++|+||+||
T Consensus 228 ~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~i 307 (355)
T 1goj_A 228 SGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINC 307 (355)
T ss_dssp EEEEEEEECCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEE
T ss_pred eeEEEEEECCCCCcccccccchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEE
Confidence 89999999999998 5567899999999999999999999999986 5799999999999999999999999999999
Q ss_pred CCC--ChhhhHHHHHHHHHhhhccccCCCccccCC
Q 005372 331 NPG--EYQESVHTVSLAARSRHISNTLPSAQKVQT 363 (699)
Q Consensus 331 SP~--~~~ETlsTL~fA~rar~I~N~~~~~~~~~~ 363 (699)
||+ +++||++||+||+|||+|+|.+..|.....
T Consensus 308 sP~~~~~~ETl~TL~fA~rak~I~n~~~vn~~~~~ 342 (355)
T 1goj_A 308 SPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSP 342 (355)
T ss_dssp CCBGGGHHHHHHHHHHHHHHHTCBCCCCCCSSSSC
T ss_pred CcccccHHHHHHHHHHHHHHhhccCCceeCCCCCH
Confidence 997 589999999999999999999888866543
No 8
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=1.7e-81 Score=681.08 Aligned_cols=323 Identities=32% Similarity=0.504 Sum_probs=284.6
Q ss_pred CCCCeEEEEEcCCCCChhhhhhcCCCeeEEEEcCCCCcccCcceEEEecCCCCCCceeeeeceeeCCCCCcHhHHHHhhc
Q 005372 24 TSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSFFGQEDESVSKIFYSEV 103 (699)
Q Consensus 24 ~~~~VrV~vRvRP~~~~E~~~~~~~~~~~i~v~d~~~~~~~~~~~i~~~~~~~~~~~~F~FD~VF~~~~~sQ~~Vf~~~v 103 (699)
.+++|||+|||||++..|...+. |+.+... +..++...... ...+.|.||+||++++ +|++||+. +
T Consensus 3 ~~~~i~V~vRvRP~~~~E~~~~~-----~~~~~~~------~~~~v~~~~~~-~~~~~f~FD~Vf~~~~-~Q~~Vy~~-~ 68 (369)
T 3cob_A 3 MKGKIRVYCRLRPLCEKEIIAKE-----RNAIRSV------DEFTVEHLWKD-DKAKQHMYDRVFDGNA-TQDDVFED-T 68 (369)
T ss_dssp -CCBCEEEEEECCCCHHHHHTTC-----CBCEEEC------SSSEEEEECTT-SCEEEEECSEEECTTC-CHHHHHHT-T
T ss_pred CCCCeEEEEECCCCChhhccCCC-----cEEEEcC------CcEEEEecCCC-CCceEEecCEEECCCC-Ccceehhh-h
Confidence 46899999999999999976441 1222222 12233332221 2347899999999876 88999998 7
Q ss_pred cchhhhhcCCCCEEEEeeccCCCCCcceeccCCCCCCchHHHHHHHHHhhhcC----CceeEEEEEEEecceeeeccCCC
Q 005372 104 NPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMSKILSICQST----GSTAEISYYEVYMDRCYDLLEVK 179 (699)
Q Consensus 104 ~plV~~vl~G~N~tIfAYGqTGSGKTyTm~G~~~~~GIipral~~LF~~~~~~----~~~v~vS~~EIYnE~v~DLL~~~ 179 (699)
+|+|+++++|||+||||||||||||||||+|+++++|||||++++||+.++.. .+.|++||+|||||+|+|||.+.
T Consensus 69 ~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~ 148 (369)
T 3cob_A 69 KYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPK 148 (369)
T ss_dssp THHHHHHHTTCEEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCS
T ss_pred hhhhHhhhcCCceEEEEECCCCCCCeEeecCCCCCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCc
Confidence 99999999999999999999999999999999999999999999999988653 47899999999999999999875
Q ss_pred c---cceeeeecCCCCeEecCCEEEEeCChhHHHHHHHHHHhcCcccccCCCCCCCCceEEEEEEEEEeecCCCCceEEE
Q 005372 180 T---KEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAALTG 256 (699)
Q Consensus 180 ~---~~l~i~ed~~~~v~v~gLsev~V~S~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~~~~~~~s 256 (699)
. ..+.+++++.++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|.+.... ......|
T Consensus 149 ~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-~~~~~~s 227 (369)
T 3cob_A 149 QAKRLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQ-TQAIARG 227 (369)
T ss_dssp SSCCCCCEEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETT-TCCEEEE
T ss_pred ccCCcceEEEECCCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCC-CCcEEEE
Confidence 3 47899999999999999999999999999999999999999999999999999999999999987543 3455789
Q ss_pred EEEEEEcCCCcc---cccchhhHHHHHhhhhhHHHHHHHHHHhcCCCCCCCCCCChhhhhcccccCCCceeEEEEEeCCC
Q 005372 257 KLNLIDLADNRR---TCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDSLGGTSHALMVACLNPG 333 (699)
Q Consensus 257 kL~fVDLAGser---t~~~g~rl~E~~~INkSL~aLg~VI~aL~~~~~~IPYRdSKLTrLLqdsLgGnskt~mI~~VSP~ 333 (699)
+|+||||||+|| +++.|.|++|+.+||+||++||+||.+|++++.||||||||||+||||+||||++|+||+||||+
T Consensus 228 kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~ 307 (369)
T 3cob_A 228 KLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPA 307 (369)
T ss_dssp EEEEEECCCSSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCB
T ss_pred EEEEEeCCCCCcccccCccchhhHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCc
Confidence 999999999998 56788999999999999999999999999999999999999999999999999999999999998
Q ss_pred --ChhhhHHHHHHHHHhhhccccCCCcccc
Q 005372 334 --EYQESVHTVSLAARSRHISNTLPSAQKV 361 (699)
Q Consensus 334 --~~~ETlsTL~fA~rar~I~N~~~~~~~~ 361 (699)
+++||++||+||+|+++|+|.+..|...
T Consensus 308 ~~~~~ETl~TLrfA~rak~i~~~~~~n~~~ 337 (369)
T 3cob_A 308 ESNLDETHNSLTYASRVRSIVNDPSKNVSS 337 (369)
T ss_dssp GGGHHHHHHHHHHHHHHHTCBCCCCCCEEC
T ss_pred cccHHHHHHHHHHHHHHhhcccCCcccCCH
Confidence 6899999999999999999987766543
No 9
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=4.4e-82 Score=684.43 Aligned_cols=329 Identities=33% Similarity=0.544 Sum_probs=269.9
Q ss_pred CCCCCCeEEEEEcCCCCChhhhhhcCCCeeEEEEcCCCCcccCcceEEEecC-CCCCCceeeeeceeeCCCCCcHhHHHH
Q 005372 22 TSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKD-PDTIRSECYQLDSFFGQEDESVSKIFY 100 (699)
Q Consensus 22 ~~~~~~VrV~vRvRP~~~~E~~~~~~~~~~~i~v~d~~~~~~~~~~~i~~~~-~~~~~~~~F~FD~VF~~~~~sQ~~Vf~ 100 (699)
....++|+|+|||||++..|...+ ...++.+.+... .+.+...+ ......+.|.||+||++++ +|++||+
T Consensus 4 ~~~~~~i~V~vRvRP~~~~E~~~~---~~~~v~~~~~~~-----~v~~~~~~~~~~~~~~~f~FD~Vf~~~~-~Q~~Vy~ 74 (359)
T 1x88_A 4 EEKGKNIQVVVRCRPFNLAERKAS---AHSIVECDPVRK-----EVSVRTGGLADKSSRKTYTFDMVFGAST-KQIDVYR 74 (359)
T ss_dssp -----CCEEEEEECCCCHHHHHTT---CCCCEEEETTTT-----EEEEEEEEETTEEEEEEEECSEEECTTC-CHHHHHH
T ss_pred CCCCCCeEEEEEeCCCChhhhhcC---CceEEEEcCCCc-----EEEEeCCCccCCcCceEEeceEEEeccC-chhHHHH
Confidence 345689999999999999997654 344555544321 22232211 1122356899999999875 8899999
Q ss_pred hhccchhhhhcCCCCEEEEeeccCCCCCcceeccCCC-----------CCCchHHHHHHHHHhhhcC--CceeEEEEEEE
Q 005372 101 SEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEE-----------RPGLMPLAMSKILSICQST--GSTAEISYYEV 167 (699)
Q Consensus 101 ~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTm~G~~~-----------~~GIipral~~LF~~~~~~--~~~v~vS~~EI 167 (699)
.+++|+|+++++|||+||||||||||||||||+|+.. .+|||||++++||+.++.. .+.|++||+||
T Consensus 75 ~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~v~vS~~EI 154 (359)
T 1x88_A 75 SVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEI 154 (359)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSSSSEEEEEEEEEEEE
T ss_pred HHHHHhHHHHhCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhccCceEEEEEEEEEE
Confidence 9999999999999999999999999999999999753 3699999999999988754 46899999999
Q ss_pred ecceeeeccCCCc---cceeeeecCC--CCeEecCCEEEEeCChhHHHHHHHHHHhcCcccccCCCCCCCCceEEEEEEE
Q 005372 168 YMDRCYDLLEVKT---KEISILDDKD--GQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISV 242 (699)
Q Consensus 168 YnE~v~DLL~~~~---~~l~i~ed~~--~~v~v~gLsev~V~S~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~V 242 (699)
|||+|+|||++.. ..+.+++++. ++++|.||+++.|.|++|++++|..|..+|++++|.||+.|||||+||+|+|
T Consensus 155 YnE~i~DLL~~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i 234 (359)
T 1x88_A 155 YNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTI 234 (359)
T ss_dssp ETTEEEETTCTTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEE
T ss_pred eCceeeehhcccccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEE
Confidence 9999999998764 4688999874 7899999999999999999999999999999999999999999999999999
Q ss_pred EEeecC--CCCceEEEEEEEEEcCCCcc---cccchhhHHHHHhhhhhHHHHHHHHHHhcCCCCCCCCCCChhhhhcccc
Q 005372 243 STLLGD--DSKAALTGKLNLIDLADNRR---TCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDS 317 (699)
Q Consensus 243 ~~~~~~--~~~~~~~skL~fVDLAGser---t~~~g~rl~E~~~INkSL~aLg~VI~aL~~~~~~IPYRdSKLTrLLqds 317 (699)
.+.... +......|+|+||||||+|| ++..|.|++|+..||+||++||+||.+|.++..||||||||||+||||+
T Consensus 235 ~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqds 314 (359)
T 1x88_A 235 HMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDS 314 (359)
T ss_dssp EEEEECTTSCEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGG
T ss_pred EEecccCCCCceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhcCCCCCccccchHHHHHHHH
Confidence 875432 22334579999999999998 5667899999999999999999999999999999999999999999999
Q ss_pred cCCCceeEEEEEeCCC--ChhhhHHHHHHHHHhhhccccCCCcc
Q 005372 318 LGGTSHALMVACLNPG--EYQESVHTVSLAARSRHISNTLPSAQ 359 (699)
Q Consensus 318 LgGnskt~mI~~VSP~--~~~ETlsTL~fA~rar~I~N~~~~~~ 359 (699)
||||++|+||+||||+ +++||++||+||+|||+|+|.+.+|+
T Consensus 315 LgGnskt~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn~ 358 (359)
T 1x88_A 315 LGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358 (359)
T ss_dssp SSSSSEEEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC---
T ss_pred hCCCCeEEEEEEECCCcccHHHHHHHHHHHHHHhhccCcceeCC
Confidence 9999999999999998 58999999999999999999877664
No 10
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=6.5e-82 Score=685.92 Aligned_cols=330 Identities=39% Similarity=0.609 Sum_probs=273.5
Q ss_pred CCCCCCCeEEEEEcCCCCChhhhhhcCCCeeEEEEcCCCCcccCcceEEEecCCCCCCceeeeeceeeCCCCCcHhHHHH
Q 005372 21 STSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSFFGQEDESVSKIFY 100 (699)
Q Consensus 21 ~~~~~~~VrV~vRvRP~~~~E~~~~~~~~~~~i~v~d~~~~~~~~~~~i~~~~~~~~~~~~F~FD~VF~~~~~sQ~~Vf~ 100 (699)
.....++|+|+|||||++..|...+ ...++.+.+... +.+. ........+.|.||+||++++ +|++||+
T Consensus 18 ~~~~~~~i~V~vRvRP~~~~E~~~~---~~~~v~~~~~~~------~~~~-~~~~~~~~~~F~FD~vf~~~~-~Q~~Vy~ 86 (373)
T 2wbe_C 18 QKKSNQNIQVYVRVRPLNSRERCIR---SAEVVDVVGPRE------VVTR-HTLDSKLTKKFTFDRSFGPES-KQCDVYS 86 (373)
T ss_dssp CCCCCEECEEEEEECCCCHHHHHHT---CCBCEEEETTTE------EEES-SSSSSTTCEEEECSEEECTTC-CHHHHHH
T ss_pred CcCCCCCeEEEEEcCCCChhhhccC---CCceEEEcCCCe------EEEe-cCCCCCCceEEeccEEecccc-chhHHHH
Confidence 4456789999999999999997654 345666655432 1221 112223457899999999885 8899999
Q ss_pred hhccchhhhhcCCCCEEEEeeccCCCCCcceeccCCC-----------CCCchHHHHHHHHHhhhc--CCceeEEEEEEE
Q 005372 101 SEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEE-----------RPGLMPLAMSKILSICQS--TGSTAEISYYEV 167 (699)
Q Consensus 101 ~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTm~G~~~-----------~~GIipral~~LF~~~~~--~~~~v~vS~~EI 167 (699)
.+++|+|+++++|||+||||||||||||||||+|+.. ++|||||++++||+.++. ..+.|++||+||
T Consensus 87 ~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~v~vS~~EI 166 (373)
T 2wbe_C 87 VVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMMEVEYTMRISYLEL 166 (373)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEE
T ss_pred HHHHHHHHHHhCCceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhcCceEEEEEEEEEE
Confidence 9999999999999999999999999999999999753 679999999999998764 568999999999
Q ss_pred ecceeeeccCCCc-cceeeeec--CCCCeEecCCEEEEeCChhHHHHHHHHHHhcCcccccCCCCCCCCceEEEEEEEEE
Q 005372 168 YMDRCYDLLEVKT-KEISILDD--KDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVST 244 (699)
Q Consensus 168 YnE~v~DLL~~~~-~~l~i~ed--~~~~v~v~gLsev~V~S~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~V~~ 244 (699)
|||+|+|||++.. ..+.++++ ..++++|.||+++.|.|++|++++|..|..+|++++|.||+.|||||+||+|+|.+
T Consensus 167 YnE~i~DLL~~~~~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~ 246 (373)
T 2wbe_C 167 YNEELCDLLSTDDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHI 246 (373)
T ss_dssp ETTEEEESSCTTSCSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEE
T ss_pred eCCeEEECCCCCCCCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEE
Confidence 9999999998754 46778887 46789999999999999999999999999999999999999999999999999987
Q ss_pred eecC--CCCceEEEEEEEEEcCCCccc---ccc-hhhHHHHHhhhhhHHHHHHHHHHhcCCCCCCCCCCChhhhhccccc
Q 005372 245 LLGD--DSKAALTGKLNLIDLADNRRT---CNE-GIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDSL 318 (699)
Q Consensus 245 ~~~~--~~~~~~~skL~fVDLAGsert---~~~-g~rl~E~~~INkSL~aLg~VI~aL~~~~~~IPYRdSKLTrLLqdsL 318 (699)
.... +......|+|+||||||+||. +.. |.|++|+..||+||++||+||.+|.++..||||||||||+||||+|
T Consensus 247 ~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsL 326 (373)
T 2wbe_C 247 RENGIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKLTRLLQESL 326 (373)
T ss_dssp CTTCTTTCCEEEEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHCSSCCCGGGCHHHHHTHHHH
T ss_pred ecCCCCCCcceeEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcCCCcCccccchHHHHHHHHh
Confidence 5432 223346799999999999984 344 8899999999999999999999999999999999999999999999
Q ss_pred CCCceeEEEEEeCCC--ChhhhHHHHHHHHHhhhccccCCCcccc
Q 005372 319 GGTSHALMVACLNPG--EYQESVHTVSLAARSRHISNTLPSAQKV 361 (699)
Q Consensus 319 gGnskt~mI~~VSP~--~~~ETlsTL~fA~rar~I~N~~~~~~~~ 361 (699)
|||++|+||+||||+ +++||++||+||+|||+|+|.+.+|+..
T Consensus 327 gGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN~~~ 371 (373)
T 2wbe_C 327 GGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQKL 371 (373)
T ss_dssp HSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEECCCCCEEC
T ss_pred CCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccccceecccc
Confidence 999999999999997 6899999999999999999988877653
No 11
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=5.4e-82 Score=675.50 Aligned_cols=312 Identities=34% Similarity=0.539 Sum_probs=279.7
Q ss_pred CCCCCCCeEEEEEcCCCCChhhhhhcCCCeeEEEEcCCCCcccCcceEEEecCCCCCCceeeeeceeeCCCCCcHhHHHH
Q 005372 21 STSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSFFGQEDESVSKIFY 100 (699)
Q Consensus 21 ~~~~~~~VrV~vRvRP~~~~E~~~~~~~~~~~i~v~d~~~~~~~~~~~i~~~~~~~~~~~~F~FD~VF~~~~~sQ~~Vf~ 100 (699)
.....++|||+|||||+++.|...+ ...++.+.+.. ++.+. .+.|.||+||++++ +|++||+
T Consensus 2 ~~~~~~~i~V~vRvRP~~~~E~~~~---~~~~~~~~~~~--------~~~~~------~~~f~FD~Vf~~~~-sQ~~Vy~ 63 (325)
T 1bg2_A 2 ADLAECNIKVMCRFRPLNESEVNRG---DKYIAKFQGED--------TVVIA------SKPYAFDRVFQSST-SQEQVYN 63 (325)
T ss_dssp -CCSSCEEEEEEEECCCCHHHHHHT---CCBCCEEETTT--------EEEET------TEEEECSEEECTTC-CHHHHHH
T ss_pred CCCCCCCEEEEEEcCCCChhHhccC---CeeEEEECCCC--------eEEEC------CEEEECCeEeCCCC-CHHHHHH
Confidence 3456789999999999999997654 23445554432 22222 35799999999986 8899999
Q ss_pred hhccchhhhhcCCCCEEEEeeccCCCCCcceeccCCCC---CCchHHHHHHHHHhhhc----CCceeEEEEEEEecceee
Q 005372 101 SEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEER---PGLMPLAMSKILSICQS----TGSTAEISYYEVYMDRCY 173 (699)
Q Consensus 101 ~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTm~G~~~~---~GIipral~~LF~~~~~----~~~~v~vS~~EIYnE~v~ 173 (699)
.+++|+|+++++|||+||||||||||||||||+|+..+ +|||||++++||+.++. ..+.|++||+|||||+|+
T Consensus 64 ~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~ 143 (325)
T 1bg2_A 64 DCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIR 143 (325)
T ss_dssp HHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEE
T ss_pred HHhhhhHHHHhCCCeEEEEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeee
Confidence 99999999999999999999999999999999997544 59999999999998753 357899999999999999
Q ss_pred eccCCCccceeeeecCCCCeEecCCEEEEeCChhHHHHHHHHHHhcCcccccCCCCCCCCceEEEEEEEEEeecCCCCce
Q 005372 174 DLLEVKTKEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAA 253 (699)
Q Consensus 174 DLL~~~~~~l~i~ed~~~~v~v~gLsev~V~S~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~~~~~ 253 (699)
|||++....+.+++++.++++|.|++++.|.|++|++++|..|..+|++++|.+|..|||||+||+|+|.+.... ....
T Consensus 144 DLL~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-~~~~ 222 (325)
T 1bg2_A 144 DLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQ-TEQK 222 (325)
T ss_dssp ESSCTTCCSBCEEECTTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETT-TCCE
T ss_pred ecccCCCCCceEEECCCCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecC-CCcE
Confidence 999988889999999999999999999999999999999999999999999999999999999999999987543 3345
Q ss_pred EEEEEEEEEcCCCcc---cccchhhHHHHHhhhhhHHHHHHHHHHhcCCCCCCCCCCChhhhhcccccCCCceeEEEEEe
Q 005372 254 LTGKLNLIDLADNRR---TCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDSLGGTSHALMVACL 330 (699)
Q Consensus 254 ~~skL~fVDLAGser---t~~~g~rl~E~~~INkSL~aLg~VI~aL~~~~~~IPYRdSKLTrLLqdsLgGnskt~mI~~V 330 (699)
..|+|+||||||+|| ++..|.|++|+.+||+||++||+||.+|++++.||||||||||+||||+||||++|+||+||
T Consensus 223 ~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGns~t~mia~v 302 (325)
T 1bg2_A 223 LSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICC 302 (325)
T ss_dssp EEEEEEEEECCCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHGGGTSSSSCEEEEEEEE
T ss_pred EEEEEEEEECCCCCcccccCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHhCCCCcEEEEEEE
Confidence 789999999999998 55678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC--ChhhhHHHHHHHHHhhhc
Q 005372 331 NPG--EYQESVHTVSLAARSRHI 351 (699)
Q Consensus 331 SP~--~~~ETlsTL~fA~rar~I 351 (699)
||+ +++||++||+||+|||+|
T Consensus 303 sP~~~~~~ETl~TL~fa~rak~I 325 (325)
T 1bg2_A 303 SPSSYNESETKSTLLFGQRAKTI 325 (325)
T ss_dssp CCBGGGHHHHHHHHHHHHTSCCC
T ss_pred CCccccHHHHHHHHHHHHHhccC
Confidence 997 589999999999999976
No 12
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=1.9e-81 Score=680.99 Aligned_cols=324 Identities=33% Similarity=0.544 Sum_probs=269.6
Q ss_pred CCCeEEEEEcCCCCChhhhhhcCCCeeEEEEcCCCCcccCcceEEEecCCCCCCceeeeeceeeCCCC-------CcHhH
Q 005372 25 SSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSFFGQED-------ESVSK 97 (699)
Q Consensus 25 ~~~VrV~vRvRP~~~~E~~~~~~~~~~~i~v~d~~~~~~~~~~~i~~~~~~~~~~~~F~FD~VF~~~~-------~sQ~~ 97 (699)
.++|||+|||||++..|...+ ..+++.+.+.. ..+..........+.|.||+||++.. .+|++
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~---~~~~v~~~~~~-------~~i~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~ 72 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSREMSRD---SKCIIQMSGST-------TTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQ 72 (366)
T ss_dssp -CCEEEEEEECCCCHHHHHTT---CCBCEEEETTE-------EEECCTTCTTSCCEEEECSEEEECSSCTTSSSCCCHHH
T ss_pred CCCcEEEEECCCCChhhccCC---CCeEEEECCCc-------EEEeccCCCCCCceEEecceEeecCccccccccCcHHH
Confidence 368999999999999997643 44556654431 12221112223457899999998761 48999
Q ss_pred HHHhhccchhhhhcCCCCEEEEeeccCCCCCcceeccCC--CCCCchHHHHHHHHHhhhcC-----CceeEEEEEEEecc
Q 005372 98 IFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSE--ERPGLMPLAMSKILSICQST-----GSTAEISYYEVYMD 170 (699)
Q Consensus 98 Vf~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTm~G~~--~~~GIipral~~LF~~~~~~-----~~~v~vS~~EIYnE 170 (699)
||+.+++|+|+++++|||+||||||||||||||||+|+. +++|||||++++||+.++.. .+.|++||+|||||
T Consensus 73 Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE 152 (366)
T 2zfi_A 73 VYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCE 152 (366)
T ss_dssp HHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCC
Confidence 999999999999999999999999999999999999984 57899999999999988642 47899999999999
Q ss_pred eeeeccCCCc-cceeeeecCCCCeEecCCEEEEeCChhHHHHHHHHHHhcCcccccCCCCCCCCceEEEEEEEEEeecCC
Q 005372 171 RCYDLLEVKT-KEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDD 249 (699)
Q Consensus 171 ~v~DLL~~~~-~~l~i~ed~~~~v~v~gLsev~V~S~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~ 249 (699)
+|+|||++.. ..+.+++++.++++|.||+++.|.|++|++++|..|.++|++++|.||+.|||||+||+|+|.+...+.
T Consensus 153 ~v~DLL~~~~~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~ 232 (366)
T 2zfi_A 153 RVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDA 232 (366)
T ss_dssp EEEETTCTTTCSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECT
T ss_pred eEEEccccccCCCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccC
Confidence 9999999764 479999999999999999999999999999999999999999999999999999999999998765433
Q ss_pred C---CceEEEEEEEEEcCCCcc---cccchhhHHHHHhhhhhHHHHHHHHHHhcC------------CCCCCCCCCChhh
Q 005372 250 S---KAALTGKLNLIDLADNRR---TCNEGIRLLESAKINQSLFALSNVIHALNN------------NKPRVPYRESKLT 311 (699)
Q Consensus 250 ~---~~~~~skL~fVDLAGser---t~~~g~rl~E~~~INkSL~aLg~VI~aL~~------------~~~~IPYRdSKLT 311 (699)
. .....|+|+||||||+|| ++..|.|++|+..||+||++||+||.+|++ +..||||||||||
T Consensus 233 ~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT 312 (366)
T 2zfi_A 233 ETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLT 312 (366)
T ss_dssp TTTCEEEEEEEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHH
T ss_pred CCCccceeEeEEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHH
Confidence 2 234579999999999998 456789999999999999999999999986 3479999999999
Q ss_pred hhcccccCCCceeEEEEEeCCC--ChhhhHHHHHHHHHhhhccccCCCc
Q 005372 312 RILQDSLGGTSHALMVACLNPG--EYQESVHTVSLAARSRHISNTLPSA 358 (699)
Q Consensus 312 rLLqdsLgGnskt~mI~~VSP~--~~~ETlsTL~fA~rar~I~N~~~~~ 358 (699)
+||||+||||++|+||+||||+ +++||++||+||+|||+|+|.+..+
T Consensus 313 ~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~~ 361 (366)
T 2zfi_A 313 WLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361 (366)
T ss_dssp HHTGGGSSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC---------
T ss_pred HHHHHHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCCCC
Confidence 9999999999999999999997 5899999999999999999976543
No 13
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=5.4e-81 Score=675.04 Aligned_cols=324 Identities=33% Similarity=0.527 Sum_probs=253.6
Q ss_pred CCCCCeEEEEEcCCCCChhhhhhcCCCeeEEEEcCCCCcccCcc-eEEEecCC----------CCCCceeeeeceeeCCC
Q 005372 23 STSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEE-VAVYLKDP----------DTIRSECYQLDSFFGQE 91 (699)
Q Consensus 23 ~~~~~VrV~vRvRP~~~~E~~~~~~~~~~~i~v~d~~~~~~~~~-~~i~~~~~----------~~~~~~~F~FD~VF~~~ 91 (699)
...++|||+|||||++.+|...+ ...+|.+.+...+..... ..+.+... .......|.||+||+++
T Consensus 7 d~~~~i~V~vRvRP~~~~E~~~~---~~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~ 83 (355)
T 3lre_A 7 DLCHHMKVVVRVRPENTKEKAAG---FHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDET 83 (355)
T ss_dssp -----CEEEEEECCCCHHHHHTT---CCBSEEECSSSEEEEC------------------------CCEEEECSEEECTT
T ss_pred hccCCCEEEEEeCcCChHHHhcC---CceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEECCC
Confidence 35789999999999999997755 455677765433211100 00100000 01234579999999987
Q ss_pred CCcHhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCcceeccCCCCCCchHHHHHHHHHhhhcC----CceeEEEEEEE
Q 005372 92 DESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMSKILSICQST----GSTAEISYYEV 167 (699)
Q Consensus 92 ~~sQ~~Vf~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTm~G~~~~~GIipral~~LF~~~~~~----~~~v~vS~~EI 167 (699)
+ +|++||+.+++|+|+++++|||+||||||||||||||||+|+.+++||+||++++||+.++.. .+.+.+||+||
T Consensus 84 ~-~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~vS~~EI 162 (355)
T 3lre_A 84 S-TQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEV 162 (355)
T ss_dssp C-CHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEE
T ss_pred C-ChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCeeehhhhHHHHhhhhhccCceEEEEEEEEEE
Confidence 5 889999999999999999999999999999999999999999999999999999999987642 36899999999
Q ss_pred ecceeeeccCCCccceeeeecCCCCeEecCCEEEEeCChhHHHHHHHHHHhcCcccccCCCCCCCCceEEEEEEEEEeec
Q 005372 168 YMDRCYDLLEVKTKEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLG 247 (699)
Q Consensus 168 YnE~v~DLL~~~~~~l~i~ed~~~~v~v~gLsev~V~S~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~ 247 (699)
|||+|+|||.+. .++.+++++.++++|.|++++.|.|++|++++|..|.++|++++|.||+.|||||+||+|+|.+...
T Consensus 163 YnE~i~DLL~~~-~~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~ 241 (355)
T 3lre_A 163 YNEQIRDLLVNS-GPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDK 241 (355)
T ss_dssp ETTEEEESSSCC-CCBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEEEEEEEEEEET
T ss_pred ECCEEEECcCCC-CCceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEEEEEEEEEecC
Confidence 999999999865 5799999999999999999999999999999999999999999999999999999999999998754
Q ss_pred CC--CCceEEEEEEEEEcCCCcc---cccchhhHHHHHhhhhhHHHHHHHHHHhcCCC---CCCCCCCChhhhhcccccC
Q 005372 248 DD--SKAALTGKLNLIDLADNRR---TCNEGIRLLESAKINQSLFALSNVIHALNNNK---PRVPYRESKLTRILQDSLG 319 (699)
Q Consensus 248 ~~--~~~~~~skL~fVDLAGser---t~~~g~rl~E~~~INkSL~aLg~VI~aL~~~~---~~IPYRdSKLTrLLqdsLg 319 (699)
.. ......|+|+||||||+|| +++.|.|++|+.+||+||++||+||.+|++++ .|||||||||||||||+||
T Consensus 242 ~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lL~dsLg 321 (355)
T 3lre_A 242 TASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLG 321 (355)
T ss_dssp TSCTTCCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC--------CCGGGSHHHHHTTTTSS
T ss_pred CCCCCCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCcccCHHHHHHHHhcC
Confidence 32 2334579999999999998 56678999999999999999999999998754 5999999999999999999
Q ss_pred CCceeEEEEEeCCC--ChhhhHHHHHHHHHhhhc
Q 005372 320 GTSHALMVACLNPG--EYQESVHTVSLAARSRHI 351 (699)
Q Consensus 320 Gnskt~mI~~VSP~--~~~ETlsTL~fA~rar~I 351 (699)
|||+|+||+||||+ +++||++||+||+|||+|
T Consensus 322 Gnskt~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 322 GNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp TTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred CCceEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999998 689999999999999976
No 14
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=2.4e-80 Score=664.06 Aligned_cols=316 Identities=36% Similarity=0.549 Sum_probs=267.7
Q ss_pred CCCCeEEEEEcCCCCChhhhhhcCCCeeEEEEcCCCCcccCcceEEEecCCCCCCceeeeeceeeCCCCCcHhHHHHhhc
Q 005372 24 TSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSFFGQEDESVSKIFYSEV 103 (699)
Q Consensus 24 ~~~~VrV~vRvRP~~~~E~~~~~~~~~~~i~v~d~~~~~~~~~~~i~~~~~~~~~~~~F~FD~VF~~~~~sQ~~Vf~~~v 103 (699)
.+++|||+|||||+++.|..... ...++.+...+. ..+.+... .....|.||+||++++ +|++||+. +
T Consensus 2 ~~~~i~V~vRvRP~~~~e~~~~~--~~~~~~~~~~~~------~~~~~~~~--~~~~~f~FD~Vf~~~~-~Q~~Vy~~-v 69 (330)
T 2h58_A 2 SKGNIRVIARVRPVTKEDGEGPE--ATNAVTFDADDD------SIIHLLHK--GKPVSFELDKVFSPQA-SQQDVFQE-V 69 (330)
T ss_dssp ---CEEEEEEECCCCGGGCSSGG--GSBCEEECSSCT------TEEEEEET--TEEEEEECSEEECTTC-CHHHHHTT-T
T ss_pred CCCCEEEEEEcCCCChhhcccCC--CccEEEEeCCCC------cEEEEcCC--CCeeEEecCeEeCCCC-CcHhHHHH-H
Confidence 35899999999999998864321 223444432221 12222221 2356899999999875 88999987 6
Q ss_pred cchhhhhcCCCCEEEEeeccCCCCCcceeccCCCCCCchHHHHHHHHHhhhcC----CceeEEEEEEEecceeeeccCCC
Q 005372 104 NPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMSKILSICQST----GSTAEISYYEVYMDRCYDLLEVK 179 (699)
Q Consensus 104 ~plV~~vl~G~N~tIfAYGqTGSGKTyTm~G~~~~~GIipral~~LF~~~~~~----~~~v~vS~~EIYnE~v~DLL~~~ 179 (699)
.|+|+++++|||+||||||||||||||||+|+.+++|||||++++||+.++.. .+.|++||+|||||+|+|||++.
T Consensus 70 ~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~ 149 (330)
T 2h58_A 70 QALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKE 149 (330)
T ss_dssp HHHHHHHHTTCCEEEEEESSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCS
T ss_pred HHHHHHHhCCCEEEEEeECCCCCCCcEEEecCCCCCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhccccc
Confidence 99999999999999999999999999999999999999999999999988653 47899999999999999999865
Q ss_pred c-c--ceeeeecCCCCeEecCCEEEEeCChhHHHHHHHHHHhcCcccccCCCCCCCCceEEEEEEEEEeecCCCCceEEE
Q 005372 180 T-K--EISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAALTG 256 (699)
Q Consensus 180 ~-~--~l~i~ed~~~~v~v~gLsev~V~S~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~~~~~~~s 256 (699)
. . .+.+++++.++++|.|++++.|.|++|++++|..|.++|++++|.+|+.|||||+||+|+|.+.... .+....|
T Consensus 150 ~~~~l~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-~~~~~~s 228 (330)
T 2h58_A 150 PQEKLEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCS-TGLRTTG 228 (330)
T ss_dssp SCCCCCCEECTTSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETT-TTEEEEE
T ss_pred ccccceEEEeecCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecC-CCcEEEE
Confidence 3 2 3455578889999999999999999999999999999999999999999999999999999886543 3445689
Q ss_pred EEEEEEcCCCcc---cccchhhHHHHHhhhhhHHHHHHHHHHhcCCCCCCCCCCChhhhhcccccCCCceeEEEEEeCCC
Q 005372 257 KLNLIDLADNRR---TCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDSLGGTSHALMVACLNPG 333 (699)
Q Consensus 257 kL~fVDLAGser---t~~~g~rl~E~~~INkSL~aLg~VI~aL~~~~~~IPYRdSKLTrLLqdsLgGnskt~mI~~VSP~ 333 (699)
+|+||||||+|| ++..|.|++|+.+||+||++|++||.+|++++.||||||||||+||||+||||++|+||+||||+
T Consensus 229 kL~lVDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~ 308 (330)
T 2h58_A 229 KLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPV 308 (330)
T ss_dssp EEEEEECCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCB
T ss_pred EEEEEeCCCCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhcCCCCCcccccHHHHHHHHHhCCCceEEEEEEeCCc
Confidence 999999999998 55678999999999999999999999999999999999999999999999999999999999997
Q ss_pred --ChhhhHHHHHHHHHhhhcc
Q 005372 334 --EYQESVHTVSLAARSRHIS 352 (699)
Q Consensus 334 --~~~ETlsTL~fA~rar~I~ 352 (699)
+++||++||+||+|+|+|+
T Consensus 309 ~~~~~ETl~TL~fA~rak~i~ 329 (330)
T 2h58_A 309 EKNTSETLYSLKFAERVRSVE 329 (330)
T ss_dssp GGGHHHHHHHHHHHHHHC---
T ss_pred cccHHHHHHHHHHHHHHhhCc
Confidence 5899999999999999986
No 15
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=1.9e-80 Score=668.65 Aligned_cols=313 Identities=37% Similarity=0.627 Sum_probs=257.9
Q ss_pred CCCCCCCeEEEEEcCCCCChhhhhhcCCCeeEEEEcCCCCcccCcceEEEecCCCCCCceeeeeceeeCCCCCcHhHHHH
Q 005372 21 STSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSFFGQEDESVSKIFY 100 (699)
Q Consensus 21 ~~~~~~~VrV~vRvRP~~~~E~~~~~~~~~~~i~v~d~~~~~~~~~~~i~~~~~~~~~~~~F~FD~VF~~~~~sQ~~Vf~ 100 (699)
+..+.++|||+|||||+++.|...+ ...|+.+.+... .+.+. ..+.|.||+||++++ +|++||+
T Consensus 6 ~~~~~~~i~V~vRvRP~~~~E~~~~---~~~~~~~~~~~~-------~~~~~-----~~~~f~FD~Vf~~~~-~Q~~vy~ 69 (344)
T 4a14_A 6 PGAEEAPVRVALRVRPLLPKELLHG---HQSCLQVEPGLG-------RVTLG-----RDRHFGFHVVLAEDA-GQEAVYQ 69 (344)
T ss_dssp ---CCCCCEEEEEECCCCHHHHHTT---CCBCEEEEGGGT-------EEEET-----TTEEEECSEEECTTC-CHHHHHH
T ss_pred CCccccceEEEEEecccchHHHhcc---CeeEEEEcCCCc-------eEEec-----ccceEEEEEEEecCc-chhHHHH
Confidence 3446789999999999999997654 456777755422 33332 346799999999875 8899999
Q ss_pred hhccchhhhhcCCCCEEEEeeccCCCCCcceeccC------CCCCCchHHHHHHHHHhhhcC---CceeEEEEEEEecce
Q 005372 101 SEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGS------EERPGLMPLAMSKILSICQST---GSTAEISYYEVYMDR 171 (699)
Q Consensus 101 ~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTm~G~------~~~~GIipral~~LF~~~~~~---~~~v~vS~~EIYnE~ 171 (699)
.+++|+|+++++|||+||||||||||||||||+|. .+++|||||++++||+.++.. .+.|++||+|||||+
T Consensus 70 ~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~ 149 (344)
T 4a14_A 70 ACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEE 149 (344)
T ss_dssp HHTHHHHHHHHTTCCEEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHCTTSEEEEEEEEEEEETTE
T ss_pred HHHHHHHHHHHhhcCeeEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccccceeeEEEEehhhhhHHH
Confidence 99999999999999999999999999999999997 468999999999999988653 578999999999999
Q ss_pred eeeccCCC--ccceeeeecCCCCeEecCCEEEEeCChhHHHHHHHHHHhcCcccccCCCCCCCCceEEEEEEEEEeecC-
Q 005372 172 CYDLLEVK--TKEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGD- 248 (699)
Q Consensus 172 v~DLL~~~--~~~l~i~ed~~~~v~v~gLsev~V~S~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~- 248 (699)
|+|||++. ...+.+++++.++++|.|++++.|.|++|++++|..|..+|++++|.||+.|||||+||+|+|.+....
T Consensus 150 i~DLL~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~ 229 (344)
T 4a14_A 150 FRDLLEVGTASRDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAP 229 (344)
T ss_dssp EEETTSSCCCGGGCEEEECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC---
T ss_pred HHHHHHhccccccceeeeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCc
Confidence 99999854 457999999999999999999999999999999999999999999999999999999999999886421
Q ss_pred ------CCCceEEEEEEEEEcCCCcc---cccchhhHHHHHhhhhhHHHHHHHHHHhcCC---CCCCCCCCChhhhhccc
Q 005372 249 ------DSKAALTGKLNLIDLADNRR---TCNEGIRLLESAKINQSLFALSNVIHALNNN---KPRVPYRESKLTRILQD 316 (699)
Q Consensus 249 ------~~~~~~~skL~fVDLAGser---t~~~g~rl~E~~~INkSL~aLg~VI~aL~~~---~~~IPYRdSKLTrLLqd 316 (699)
.......|+|+||||||+|| ++..|.|++|+..||+||++||+||.+|+++ ..|||||||||||||||
T Consensus 230 ~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqd 309 (344)
T 4a14_A 230 SRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKD 309 (344)
T ss_dssp ---------CEEEEEEEEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTT
T ss_pred ccCCCccccceeeeeeeEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHh
Confidence 22345679999999999998 5678899999999999999999999999874 35999999999999999
Q ss_pred ccCCCceeEEEEEeCCC--ChhhhHHHHHHHHHhh
Q 005372 317 SLGGTSHALMVACLNPG--EYQESVHTVSLAARSR 349 (699)
Q Consensus 317 sLgGnskt~mI~~VSP~--~~~ETlsTL~fA~rar 349 (699)
+||||++|+||+||||+ +++||++||+||+|||
T Consensus 310 sLgGnskt~mI~~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 310 SLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp SSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred hcCCCcceEEEEEeCCCccchhHHhhhhhhhhhcC
Confidence 99999999999999997 6899999999999986
No 16
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=2.2e-80 Score=670.05 Aligned_cols=322 Identities=35% Similarity=0.549 Sum_probs=247.4
Q ss_pred CCeEEEEEcCCCCChhhhhhcCCCeeEEEEcCCCCcccCcceEEEecCCCCCCceeeeeceeeCC-------CCCcHhHH
Q 005372 26 SKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSFFGQ-------EDESVSKI 98 (699)
Q Consensus 26 ~~VrV~vRvRP~~~~E~~~~~~~~~~~i~v~d~~~~~~~~~~~i~~~~~~~~~~~~F~FD~VF~~-------~~~sQ~~V 98 (699)
++|+|+|||||++.+|...+ ..+++.+.+...+......... ........+.|.||+||++ ...+|++|
T Consensus 1 S~VkV~vRvRPl~~~E~~~~---~~~vv~~~~~~~~~~~~~~~~~-~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~v 76 (354)
T 3gbj_A 1 SKVKVAVRIRPMNRRETDLH---TKCVVDVDANKVILNPVNTNLS-KGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIV 76 (354)
T ss_dssp -CEEEEEEECCCCHHHHHHT---CCBCEEEETTEEEECCC------------CCEEEECSEEEECSCTTCTTTBCCHHHH
T ss_pred CCcEEEEECCCCChhhhccC---CceEEEeCCCeEEEeCCccccc-cccccCCceEEEeeEEeccCccccccccccHHHH
Confidence 47999999999999997654 3455555433211000000000 1111224578999999953 23479999
Q ss_pred HHhhccchhhhhcCCCCEEEEeeccCCCCCcceeccCCCCCCchHHHHHHHHHhhhc-----CCceeEEEEEEEecceee
Q 005372 99 FYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMSKILSICQS-----TGSTAEISYYEVYMDRCY 173 (699)
Q Consensus 99 f~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTm~G~~~~~GIipral~~LF~~~~~-----~~~~v~vS~~EIYnE~v~ 173 (699)
|+.++.|+|+++++|||+||||||||||||||||+|+.+++|||||++++||+.++. ..+.|.+||+|||||+|+
T Consensus 77 y~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~ 156 (354)
T 3gbj_A 77 FKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVR 156 (354)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEEE
T ss_pred HHHhhHHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCeee
Confidence 999999999999999999999999999999999999999999999999999997753 247899999999999999
Q ss_pred eccCCCc--cceeeeecCCCCeEecCCEEEEeCChhHHHHHHHHHHhcCcccccCCCCCCCCceEEEEEEEEEeecC---
Q 005372 174 DLLEVKT--KEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGD--- 248 (699)
Q Consensus 174 DLL~~~~--~~l~i~ed~~~~v~v~gLsev~V~S~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~--- 248 (699)
|||++.. ..+.+++++.++++|.|++++.|.+++|++.+|..|.++|++++|.||+.|||||+||+|+|.+...+
T Consensus 157 DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~ 236 (354)
T 3gbj_A 157 DLLDPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKS 236 (354)
T ss_dssp ETTC------CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEECTTS
T ss_pred EccCCCCCCcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEecccCC
Confidence 9998753 57999999999999999999999999999999999999999999999999999999999999876332
Q ss_pred CCCceEEEEEEEEEcCCCcc---cccchhhHHHHHhhhhhHHHHHHHHHHhcC------CCCCCCCCCChhhhhcccccC
Q 005372 249 DSKAALTGKLNLIDLADNRR---TCNEGIRLLESAKINQSLFALSNVIHALNN------NKPRVPYRESKLTRILQDSLG 319 (699)
Q Consensus 249 ~~~~~~~skL~fVDLAGser---t~~~g~rl~E~~~INkSL~aLg~VI~aL~~------~~~~IPYRdSKLTrLLqdsLg 319 (699)
+......|+|+||||||+|| ++..|.|++|+..||+||++||+||.+|++ +..||||||||||+||||+||
T Consensus 237 ~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqdsLg 316 (354)
T 3gbj_A 237 GTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLG 316 (354)
T ss_dssp CEEEEEEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHHHS
T ss_pred CCCCeeEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHHHhC
Confidence 22234579999999999998 556789999999999999999999999985 457999999999999999999
Q ss_pred CCceeEEEEEeCCC--ChhhhHHHHHHHHHhhhc
Q 005372 320 GTSHALMVACLNPG--EYQESVHTVSLAARSRHI 351 (699)
Q Consensus 320 Gnskt~mI~~VSP~--~~~ETlsTL~fA~rar~I 351 (699)
||++|+||+||||+ +|+||++||+||.||++-
T Consensus 317 Gnskt~mIa~vsP~~~~~~ETlsTLr~a~~~~~~ 350 (354)
T 3gbj_A 317 GNSKTAMVATVSPAADNYDETLSTLRYADRAKHH 350 (354)
T ss_dssp TTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC--
T ss_pred CCCeEEEEEEeCCCcchHHHHHHHHHHHHHhhhc
Confidence 99999999999997 699999999999999864
No 17
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=8.8e-80 Score=670.08 Aligned_cols=318 Identities=33% Similarity=0.517 Sum_probs=255.5
Q ss_pred CCCCCCCCeEEEEEcCCCCChhhhhhcCCCeeEEEEcCCCCcccCcceEEEecCCC-----CCCceeeeeceeeCCCCCc
Q 005372 20 NSTSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPD-----TIRSECYQLDSFFGQEDES 94 (699)
Q Consensus 20 ~~~~~~~~VrV~vRvRP~~~~E~~~~~~~~~~~i~v~d~~~~~~~~~~~i~~~~~~-----~~~~~~F~FD~VF~~~~~s 94 (699)
..+...++|+|+|||||+++.|...+ ...+|.+.+... +.+.-.... ....+.|.||+||++++ +
T Consensus 45 ~~~~~~~~I~V~vRvRP~~~~E~~~~---~~~~v~~~~~~~------~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~-s 114 (387)
T 2heh_A 45 TDPIEEHRICVCVRKRPLNKQELAKK---EIDVISIPSKCL------LLVHEPKLKVDLTKYLENQAFCFDFAFDETA-S 114 (387)
T ss_dssp TSCCCCCSEEEEEEECCCCHHHHHTT---CCBCEECCBSSE------EEEEEEEECTTCCEEEEEEEEECSEEECTTC-C
T ss_pred CCCCCCCCeEEEEECCCCChHHhccC---CceEEEECCCCE------EEEeCCCccccccccccccEEeeeEEEecCC-C
Confidence 34455899999999999999997654 344566544322 222211110 11246899999999875 8
Q ss_pred HhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCcceeccC------CCCCCchHHHHHHHHHhhhc-----CCceeEEE
Q 005372 95 VSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGS------EERPGLMPLAMSKILSICQS-----TGSTAEIS 163 (699)
Q Consensus 95 Q~~Vf~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTm~G~------~~~~GIipral~~LF~~~~~-----~~~~v~vS 163 (699)
|++||+.+++|+|+++++|||+||||||||||||||||+|+ ..++||+||++++||..++. ..+.|++|
T Consensus 115 Q~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~~~V~vS 194 (387)
T 2heh_A 115 NEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVT 194 (387)
T ss_dssp HHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTTCEEEEE
T ss_pred ceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCceEEEEEE
Confidence 89999999999999999999999999999999999999996 35689999999999998753 56899999
Q ss_pred EEEEecceeeeccCCCccceeeeecCCCCeEecCCEEEEeCChhHHHHHHHHHHhcCcccccCCCCCCCCceEEEEEEEE
Q 005372 164 YYEVYMDRCYDLLEVKTKEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVS 243 (699)
Q Consensus 164 ~~EIYnE~v~DLL~~~~~~l~i~ed~~~~v~v~gLsev~V~S~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~V~ 243 (699)
|+|||||+|+|||+++ ..+.+++|+.++++|.||+++.|.|++|++++|..|..+|++++|.||+.|||||+||+|+|.
T Consensus 195 ~~EIYnE~v~DLL~~~-~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~ 273 (387)
T 2heh_A 195 FFEIYNGKLFDLLNKK-AKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILR 273 (387)
T ss_dssp EEEEETTEEEETTTTT-EECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSEEEEEEEEE
T ss_pred EEEecCCeEEECCCCC-ccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEEEEEEE
Confidence 9999999999999875 468999999999999999999999999999999999999999999999999999999999998
Q ss_pred EeecCCCCceEEEEEEEEEcCCCcccc----cchhhHHHHHhhhhhHHHHHHHHHHhcCCCCCCCCCCChhhhhcccc-c
Q 005372 244 TLLGDDSKAALTGKLNLIDLADNRRTC----NEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDS-L 318 (699)
Q Consensus 244 ~~~~~~~~~~~~skL~fVDLAGsert~----~~g~rl~E~~~INkSL~aLg~VI~aL~~~~~~IPYRdSKLTrLLqds-L 318 (699)
+. ....|+|+||||||+||.. ..+.+++|++.||+||++||+||.+|++++.||||||||||+||||+ |
T Consensus 274 ~~------~~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPYRdSKLTrlLqdsll 347 (387)
T 2heh_A 274 AK------GRMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFI 347 (387)
T ss_dssp SS------SSEEEEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGGS
T ss_pred EC------CeeeeEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcCCCCCCccccHHHHHHhhhcc
Confidence 64 2368999999999999843 34567889999999999999999999999999999999999999999 6
Q ss_pred CCCceeEEEEEeCCC--ChhhhHHHHHHHHHhhhcccc
Q 005372 319 GGTSHALMVACLNPG--EYQESVHTVSLAARSRHISNT 354 (699)
Q Consensus 319 gGnskt~mI~~VSP~--~~~ETlsTL~fA~rar~I~N~ 354 (699)
|||++|+||+||||+ +++||++||+||+|||+|++.
T Consensus 348 GgnskT~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 348 GENSRTCMIATISPGISSCEYTLNTLRYADRVKELSPH 385 (387)
T ss_dssp STTEEEEEEEEECCBGGGHHHHHHHHHHHHHHCC----
T ss_pred CCCCeEEEEEEeCCccchHHHHHHHHHHHHHhccCcCC
Confidence 999999999999997 689999999999999999873
No 18
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=1.8e-79 Score=663.56 Aligned_cols=320 Identities=30% Similarity=0.499 Sum_probs=262.6
Q ss_pred CeEEEEEcCCCCChhhhhhcCCCeeEEEEcCCCCcccCcceEEEecCCCCCCceeeeeceeeCCCCCcHhHHHHhhccch
Q 005372 27 KVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSFFGQEDESVSKIFYSEVNPL 106 (699)
Q Consensus 27 ~VrV~vRvRP~~~~E~~~~~~~~~~~i~v~d~~~~~~~~~~~i~~~~~~~~~~~~F~FD~VF~~~~~sQ~~Vf~~~v~pl 106 (699)
+|||+|||||+++.|...+ ...|+.+.+...+... +...............|.||+||++++ +|++||+.+++|+
T Consensus 1 ~IrV~vRvRP~~~~E~~~~---~~~~v~~~~~~~i~i~-~~~~~~~~~~~~~~~~F~FD~Vf~~~~-~Q~~Vy~~~~~pl 75 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKK---DSDIITVKNNCTLYID-EPRYKVDMTKYIERHEFIVDKVFDDTV-DNFTVYENTIKPL 75 (360)
T ss_dssp CEEEEEEECCCCHHHHHTT---CCBCEEEEETTEEEEE-EEEEETTTEEEEEEEEEECSEEECTTC-CHHHHHHHHTHHH
T ss_pred CeEEEEECCCCChHHhccC---CceEEEECCCCEEEEe-CCccccccccccccceEEeeeEecCCC-CHHHHHHHHhhhh
Confidence 5999999999999997654 3456777654332110 011100000011246799999999875 8899999999999
Q ss_pred hhhhcC-CCCEEEEeeccCCCCCcceeccCC-----CCCCchHHHHHHHHHhhhc----CCceeEEEEEEEecceeeecc
Q 005372 107 IPGIFH-GRNATVFAYGATGSGKTYTMQGSE-----ERPGLMPLAMSKILSICQS----TGSTAEISYYEVYMDRCYDLL 176 (699)
Q Consensus 107 V~~vl~-G~N~tIfAYGqTGSGKTyTm~G~~-----~~~GIipral~~LF~~~~~----~~~~v~vS~~EIYnE~v~DLL 176 (699)
|+++++ |||+||||||||||||||||+|+. +++||+||++++||+.++. ..+.|++||+|||||+|+|||
T Consensus 76 v~~~~~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL 155 (360)
T 1ry6_A 76 IIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLL 155 (360)
T ss_dssp HHHHHHHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESC
T ss_pred hhhhccCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcc
Confidence 999996 999999999999999999999974 6789999999999998753 457899999999999999999
Q ss_pred CCCccceeeeecCCCCeEecCCEEEEeCChhHHHHHHHHHHhcCcccccCCCCCCCCceEEEEEEEEEeecCCCCceEEE
Q 005372 177 EVKTKEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAALTG 256 (699)
Q Consensus 177 ~~~~~~l~i~ed~~~~v~v~gLsev~V~S~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~~~~~~~s 256 (699)
++.. .+.+++++.++++|.|++++.|.|++|++++|..|..+|++++|.||+.|||||+||+|+|.+.. .....|
T Consensus 156 ~~~~-~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~----~~~~~s 230 (360)
T 1ry6_A 156 QKRK-MVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN----KNTSLG 230 (360)
T ss_dssp CC------------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETT----TTEEEE
T ss_pred cCCc-cceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEecc----CCccee
Confidence 8654 57788999999999999999999999999999999999999999999999999999999998643 235679
Q ss_pred EEEEEEcCCCccccc---ch-hhHHHHHhhhhhHHHHHHHHHHhcCCCCCCCCCCChhhhhcccccCCCceeEEEEEeCC
Q 005372 257 KLNLIDLADNRRTCN---EG-IRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDSLGGTSHALMVACLNP 332 (699)
Q Consensus 257 kL~fVDLAGsert~~---~g-~rl~E~~~INkSL~aLg~VI~aL~~~~~~IPYRdSKLTrLLqdsLgGnskt~mI~~VSP 332 (699)
+|+||||||+||... .| .+++|+..||+||++||+||.+|.+++.|||||||||||||||+||||++|+||+||||
T Consensus 231 kL~lVDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP 310 (360)
T 1ry6_A 231 KIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISP 310 (360)
T ss_dssp EEEEEECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSCCGGGCHHHHHTGGGGSSSCEEEEEEEECC
T ss_pred EEEEEECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCHHHHHHHHHhCCCCeEEEEEEeCC
Confidence 999999999998543 33 57889999999999999999999999999999999999999999999999999999999
Q ss_pred C--ChhhhHHHHHHHHHhhhccccCC
Q 005372 333 G--EYQESVHTVSLAARSRHISNTLP 356 (699)
Q Consensus 333 ~--~~~ETlsTL~fA~rar~I~N~~~ 356 (699)
+ +++||++||+||+|+|+|+|.+.
T Consensus 311 ~~~~~~ETlsTLrfA~rak~i~n~~~ 336 (360)
T 1ry6_A 311 TISCCEQTLNTLRYSSRVKNKGNSKL 336 (360)
T ss_dssp BGGGHHHHHHHHHHHHHHCC------
T ss_pred CcccHHHHHHHHHHHHHHhhcccCcc
Confidence 7 68999999999999999999654
No 19
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=4.2e-79 Score=668.60 Aligned_cols=318 Identities=33% Similarity=0.509 Sum_probs=257.7
Q ss_pred CCCCCCCCeEEEEEcCCCCChhhhhhcCCCeeEEEEcCCCCcccCcceEEEecCCC-----CCCceeeeeceeeCCCCCc
Q 005372 20 NSTSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPD-----TIRSECYQLDSFFGQEDES 94 (699)
Q Consensus 20 ~~~~~~~~VrV~vRvRP~~~~E~~~~~~~~~~~i~v~d~~~~~~~~~~~i~~~~~~-----~~~~~~F~FD~VF~~~~~s 94 (699)
+++...++|+|+|||||++..|...+ ...+|.+.+... +.+...... ....+.|.||+||++++ +
T Consensus 65 ~~~~~~~~I~V~vRvRPl~~~E~~~~---~~~~v~~~~~~~------v~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~-t 134 (410)
T 1v8k_A 65 TDPIEEHRICVCVRKRPLNKQELAKK---EIDVISVPSKCL------LLVHEPKLKVDLTKYLENQAFCFDFAFDETA-S 134 (410)
T ss_dssp TCTTSCCCEEEEEEECCCCHHHHHTT---CCBCEECCSSSE------EEEEEEEECTTCCEEEEEEEEECSEEECTTC-C
T ss_pred CCcCCCCCeEEEEEeCCCChhHhhcC---CccEEEECCCCE------EEEecCcccccccccccceEEeeeEEEecCC-C
Confidence 34445799999999999999997654 344566544322 222211110 11246799999999875 8
Q ss_pred HhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCcceeccCC------CCCCchHHHHHHHHHhhhc-----CCceeEEE
Q 005372 95 VSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSE------ERPGLMPLAMSKILSICQS-----TGSTAEIS 163 (699)
Q Consensus 95 Q~~Vf~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTm~G~~------~~~GIipral~~LF~~~~~-----~~~~v~vS 163 (699)
|++||+.+++|+|+++++|||+||||||||||||||||+|+. .++||+||++++||..++. ..+.|.+|
T Consensus 135 Q~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~~~~~~V~vS 214 (410)
T 1v8k_A 135 NEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVT 214 (410)
T ss_dssp HHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEE
T ss_pred hhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhcccCccEEEEEE
Confidence 899999999999999999999999999999999999999963 4689999999999998753 46899999
Q ss_pred EEEEecceeeeccCCCccceeeeecCCCCeEecCCEEEEeCChhHHHHHHHHHHhcCcccccCCCCCCCCceEEEEEEEE
Q 005372 164 YYEVYMDRCYDLLEVKTKEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVS 243 (699)
Q Consensus 164 ~~EIYnE~v~DLL~~~~~~l~i~ed~~~~v~v~gLsev~V~S~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~V~ 243 (699)
|+|||||+|+|||++. ..+.+++|+.++++|.||+++.|.|++|++++|..|..+|++++|.||..|||||+||+|+|.
T Consensus 215 ~lEIYnE~i~DLL~~~-~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~ 293 (410)
T 1v8k_A 215 FFEIYNGKVFDLLNKK-AKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLR 293 (410)
T ss_dssp EEEEETTEEEETTTTT-EEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEE
T ss_pred EEEeeCCEEEECCCCC-CCceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCceEEEEEEEE
Confidence 9999999999999875 469999999999999999999999999999999999999999999999999999999999998
Q ss_pred EeecCCCCceEEEEEEEEEcCCCcccc----cchhhHHHHHhhhhhHHHHHHHHHHhcCCCCCCCCCCChhhhhcccc-c
Q 005372 244 TLLGDDSKAALTGKLNLIDLADNRRTC----NEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDS-L 318 (699)
Q Consensus 244 ~~~~~~~~~~~~skL~fVDLAGsert~----~~g~rl~E~~~INkSL~aLg~VI~aL~~~~~~IPYRdSKLTrLLqds-L 318 (699)
+. ....|+|+||||||+||.. ..|.+++|++.||+||++||+||.+|+.++.||||||||||+||||+ |
T Consensus 294 ~~------~~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hIPYRdSKLTrLLqdsll 367 (410)
T 1v8k_A 294 TK------GRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFI 367 (410)
T ss_dssp SS------SSEEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC------CCCCHHHHHTTHHHH
T ss_pred eC------CcceeEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhcCCCCCCcccchhHHHHhhccc
Confidence 64 1368999999999999843 34567889999999999999999999999999999999999999999 6
Q ss_pred CCCceeEEEEEeCCC--ChhhhHHHHHHHHHhhhcccc
Q 005372 319 GGTSHALMVACLNPG--EYQESVHTVSLAARSRHISNT 354 (699)
Q Consensus 319 gGnskt~mI~~VSP~--~~~ETlsTL~fA~rar~I~N~ 354 (699)
|||++|+||+||||+ +++||++||+||+||+.|...
T Consensus 368 GgnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~i~~~ 405 (410)
T 1v8k_A 368 GENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSHH 405 (410)
T ss_dssp SSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTTC--
T ss_pred CCCceEEEEEEeCCccccHHHHHHHHHHHHHhccCCCC
Confidence 999999999999997 689999999999999999764
No 20
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=9.9e-79 Score=655.54 Aligned_cols=318 Identities=30% Similarity=0.453 Sum_probs=256.8
Q ss_pred CCCeEEEEEcCCCCC-hhhhhhcCCCeeEEEEcCCCCcccCcceEEEecCC-CCCCceeeeeceeeCCCCCcHhHHHHhh
Q 005372 25 SSKVRVIVRVRPFLS-QEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDP-DTIRSECYQLDSFFGQEDESVSKIFYSE 102 (699)
Q Consensus 25 ~~~VrV~vRvRP~~~-~E~~~~~~~~~~~i~v~d~~~~~~~~~~~i~~~~~-~~~~~~~F~FD~VF~~~~~sQ~~Vf~~~ 102 (699)
+++|||+|||||+++ .|.. ...++.+...+. ......+.+..+ .....+.|.||+||++++ +|++||+.
T Consensus 2 k~nIrV~vRvRP~~~~~e~~-----~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~-~Q~~Vy~~- 72 (347)
T 1f9v_A 2 RGNIRVYCRIRPALKNLENS-----DTSLINVNEFDD--NSGVQSMEVTKIQNTAQVHEFKFDKIFDQQD-TNVDVFKE- 72 (347)
T ss_dssp -CEEEEEEEECCCCTTTCCC-----TTEEEEECCCBT--TTTBEEEEEEEGGGTTCEEEEEESEEECTTC-CHHHHHHH-
T ss_pred CCCeEEEEEeCCCCcccccC-----CCceEEEecccC--CCCceEEEEecCCCCcCceEEeeCEEECCCC-CHHHHHHH-
Confidence 589999999999987 3421 234555543211 001223333322 223457899999999886 88999987
Q ss_pred ccchhhhhcCCCCEEEEeeccCCCCCcceeccCCCCCCchHHHHHHHHHhhhc-----CCceeEEEEEEEecceeeeccC
Q 005372 103 VNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMSKILSICQS-----TGSTAEISYYEVYMDRCYDLLE 177 (699)
Q Consensus 103 v~plV~~vl~G~N~tIfAYGqTGSGKTyTm~G~~~~~GIipral~~LF~~~~~-----~~~~v~vS~~EIYnE~v~DLL~ 177 (699)
+.|+|+++++|||+||||||||||||||||+|. ++|||||++++||+.++. ..+.|++||+|||||+|+|||+
T Consensus 73 v~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~--~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~ 150 (347)
T 1f9v_A 73 VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLR 150 (347)
T ss_dssp HHHHHGGGGGTCCEEEEEECCTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC
T ss_pred HHHHHHHhcCCceeEEEEECCCCCCCcEeccCC--CCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccC
Confidence 679999999999999999999999999999996 479999999999998753 4579999999999999999998
Q ss_pred CCcc---------ceeeeec-CCCCeEecCCEEEEeCChhHHHHHHHHHHhcCcccccCCCCCCCCceEEEEEEEEEeec
Q 005372 178 VKTK---------EISILDD-KDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLG 247 (699)
Q Consensus 178 ~~~~---------~l~i~ed-~~~~v~v~gLsev~V~S~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~ 247 (699)
+... .+.++++ ..++++|.|++++.|.+++|++.+|..|..+|++++|.||+.|||||+||+|+|.+...
T Consensus 151 ~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~ 230 (347)
T 1f9v_A 151 SDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNA 230 (347)
T ss_dssp -------------CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC
T ss_pred CccccccccccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecC
Confidence 7643 3567765 46789999999999999999999999999999999999999999999999999987654
Q ss_pred CCCCceEEEEEEEEEcCCCcc---cccchhhHHHHHhhhhhHHHHHHHHHHhcCCC---CCCCCCCChhhhhcccccCCC
Q 005372 248 DDSKAALTGKLNLIDLADNRR---TCNEGIRLLESAKINQSLFALSNVIHALNNNK---PRVPYRESKLTRILQDSLGGT 321 (699)
Q Consensus 248 ~~~~~~~~skL~fVDLAGser---t~~~g~rl~E~~~INkSL~aLg~VI~aL~~~~---~~IPYRdSKLTrLLqdsLgGn 321 (699)
. .+....|+|+||||||+|| ++..|.|++|+..||+||++||+||.+|++++ .||||||||||+||||+||||
T Consensus 231 ~-~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGn 309 (347)
T 1f9v_A 231 K-TGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGD 309 (347)
T ss_dssp ---CCEEEEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTT
T ss_pred C-CCceeeeEEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHHHHHHhCCC
Confidence 3 3345689999999999998 55678999999999999999999999999876 899999999999999999999
Q ss_pred ceeEEEEEeCCC--ChhhhHHHHHHHHHhhhcccc
Q 005372 322 SHALMVACLNPG--EYQESVHTVSLAARSRHISNT 354 (699)
Q Consensus 322 skt~mI~~VSP~--~~~ETlsTL~fA~rar~I~N~ 354 (699)
++|+||+||||+ +++||++||+||+|++.|++.
T Consensus 310 skt~mI~~vsP~~~~~~ETl~TLrfA~r~~~i~~~ 344 (347)
T 1f9v_A 310 SKTLMFVNISPSSSHINETLNSLRFASKVNSTRLV 344 (347)
T ss_dssp CEEEEEEEECCSGGGHHHHHHHHHHHHHHCCTTTC
T ss_pred ccEEEEEEeCCccccHHHHHHHHHHHHHHhhhccC
Confidence 999999999998 689999999999999999874
No 21
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=6.9e-79 Score=657.46 Aligned_cols=318 Identities=31% Similarity=0.459 Sum_probs=251.1
Q ss_pred CCCCeEEEEEcCCCCChhhhhhcCCCeeEEEEcCCCCcccCcceEEEecC-CCCCCceeeeeceeeCCCCCcHhHHHHhh
Q 005372 24 TSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKD-PDTIRSECYQLDSFFGQEDESVSKIFYSE 102 (699)
Q Consensus 24 ~~~~VrV~vRvRP~~~~E~~~~~~~~~~~i~v~d~~~~~~~~~~~i~~~~-~~~~~~~~F~FD~VF~~~~~sQ~~Vf~~~ 102 (699)
.+|+|||+|||||+++.|.... ...++...+... ....+.+.. ......+.|.||+||++++ +|++||+.
T Consensus 3 lkgnIrV~vRvRP~~~~E~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~-~Q~~vf~~- 73 (349)
T 3t0q_A 3 LRGNIRVYCRVRPPLLNEPQDM---SHILIEKFNEAK----GAQSLTINRNEGRILSYNFQFDMIFEPSH-TNKEIFEE- 73 (349)
T ss_dssp --CEEEEEEEECCCCTTSCCCC---TTEEECCCBC------CBEEEEEEECC--CEEEEEEESEEECTTC-CHHHHHHH-
T ss_pred CCCCcEEEEEeCCCCccccccC---ceEEEeeccCCC----CceEEEEcCCCCcccceeeecCEEECCCc-cHHHHHHH-
Confidence 3689999999999999885432 233333222211 112333322 2223456899999999986 88999996
Q ss_pred ccchhhhhcCCCCEEEEeeccCCCCCcceeccCCCCCCchHHHHHHHHHhhhc-----CCceeEEEEEEEecceeeeccC
Q 005372 103 VNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMSKILSICQS-----TGSTAEISYYEVYMDRCYDLLE 177 (699)
Q Consensus 103 v~plV~~vl~G~N~tIfAYGqTGSGKTyTm~G~~~~~GIipral~~LF~~~~~-----~~~~v~vS~~EIYnE~v~DLL~ 177 (699)
+.|+|+++++|||+||||||||||||||||+|+ ++|||||++++||+.++. ..+.|.+||+|||||+|+|||.
T Consensus 74 v~~lv~~~l~G~n~tifAYGqTGSGKTyTm~g~--~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~ 151 (349)
T 3t0q_A 74 IRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNA--GDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLR 151 (349)
T ss_dssp HHHHHHGGGTTCEEEEEEECSTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC
T ss_pred HHHHHHHHHCCcceeEEEeCCCCCCCceEeCCC--CCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhcccc
Confidence 679999999999999999999999999999996 459999999999997753 3578999999999999999998
Q ss_pred CCc-----------cceeeeecC-CCCeEecCCEEEEeCChhHHHHHHHHHHhcCcccccCCCCCCCCceEEEEEEEEEe
Q 005372 178 VKT-----------KEISILDDK-DGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTL 245 (699)
Q Consensus 178 ~~~-----------~~l~i~ed~-~~~v~v~gLsev~V~S~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~V~~~ 245 (699)
+.. ..+.+++++ .++++|.|++++.|.|++|++.+|..|.++|++++|.+|+.|||||+||+|+|.+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~ 231 (349)
T 3t0q_A 152 DFKSHDNIDEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGR 231 (349)
T ss_dssp ---------------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEE
T ss_pred ccccccccccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEE
Confidence 643 356677664 56799999999999999999999999999999999999999999999999999987
Q ss_pred ecCCCCceEEEEEEEEEcCCCcc---cccchhhHHHHHhhhhhHHHHHHHHHHhcCCC---CCCCCCCChhhhhcccccC
Q 005372 246 LGDDSKAALTGKLNLIDLADNRR---TCNEGIRLLESAKINQSLFALSNVIHALNNNK---PRVPYRESKLTRILQDSLG 319 (699)
Q Consensus 246 ~~~~~~~~~~skL~fVDLAGser---t~~~g~rl~E~~~INkSL~aLg~VI~aL~~~~---~~IPYRdSKLTrLLqdsLg 319 (699)
.... +....|+|+||||||+|| ++..|.|++|+.+||+||++||+||.+|++++ .||||||||||+||||+||
T Consensus 232 ~~~~-~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLg 310 (349)
T 3t0q_A 232 NLHT-GETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLV 310 (349)
T ss_dssp ETTT-CCEEEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHHHHHHGGGSS
T ss_pred ecCC-CCeeEEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHHHHHHHHhcC
Confidence 6533 345689999999999998 55678999999999999999999999998765 4999999999999999999
Q ss_pred CCceeEEEEEeCCC--ChhhhHHHHHHHHHhhhccc
Q 005372 320 GTSHALMVACLNPG--EYQESVHTVSLAARSRHISN 353 (699)
Q Consensus 320 Gnskt~mI~~VSP~--~~~ETlsTL~fA~rar~I~N 353 (699)
||++|+||+||||+ +++||++||+||+|++.|+-
T Consensus 311 Gnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~ik~ 346 (349)
T 3t0q_A 311 GDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKI 346 (349)
T ss_dssp TTCEEEEEEEECCCGGGHHHHHHHHHHHHHHHC---
T ss_pred CCceEEEEEEeCCchhhHHHHHHHHHHHHHhhhccc
Confidence 99999999999998 68999999999999999875
No 22
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=6.7e-79 Score=662.20 Aligned_cols=322 Identities=32% Similarity=0.453 Sum_probs=243.4
Q ss_pred CCCCCeEEEEEcCCCCChhhhhhcCCCeeEEEEcCCCCcccCcceEEEecCC-----------CCCCceeeeeceeeCCC
Q 005372 23 STSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDP-----------DTIRSECYQLDSFFGQE 91 (699)
Q Consensus 23 ~~~~~VrV~vRvRP~~~~E~~~~~~~~~~~i~v~d~~~~~~~~~~~i~~~~~-----------~~~~~~~F~FD~VF~~~ 91 (699)
..+++|||+|||||+++.|.....+ ++.+.........+..++.+..+ .....+.|.||+||+++
T Consensus 19 ~~~~~irV~vRvRP~~~~E~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~ 94 (376)
T 2rep_A 19 SLKGNIRVFCRVRPVLPGEPTPPPG----LLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRVFPPG 94 (376)
T ss_dssp ----CEEEEEEECCCCTTSCCCCGG----GSBCCC------CCCCEEECCC-----------------CEEECSEEECTT
T ss_pred ccCCCeEEEEEcCCCChhhcccCCc----eEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecEEcCCc
Confidence 3468999999999999998654211 11111100000001112222211 11234579999999987
Q ss_pred CCcHhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCcceeccCCC----CCCchHHHHHHHHHhhhc-----CCceeEE
Q 005372 92 DESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEE----RPGLMPLAMSKILSICQS-----TGSTAEI 162 (699)
Q Consensus 92 ~~sQ~~Vf~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTm~G~~~----~~GIipral~~LF~~~~~-----~~~~v~v 162 (699)
+ +|++||+. +.|+|+++++|||+||||||||||||||||+|+.. ++|||||++++||+.++. ..+.|++
T Consensus 95 ~-~Q~~Vy~~-v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~v 172 (376)
T 2rep_A 95 S-GQDEVFEE-IAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVA 172 (376)
T ss_dssp C-CHHHHHHH-HHHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEEEEEE
T ss_pred c-cchhhhhh-HHHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEEEEEE
Confidence 5 88999997 57999999999999999999999999999999753 689999999999998753 3578999
Q ss_pred EEEEEecceeeeccCCC-----ccceeeeec--CCCCeEecCCEEEEeCChhHHHHHHHHHHhcCcccccCCCCCCCCce
Q 005372 163 SYYEVYMDRCYDLLEVK-----TKEISILDD--KDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSH 235 (699)
Q Consensus 163 S~~EIYnE~v~DLL~~~-----~~~l~i~ed--~~~~v~v~gLsev~V~S~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH 235 (699)
||+|||||+|||||++. ...+.++++ +.++++|.|++++.|.+++|++++|..|.++|++++|.||+.|||||
T Consensus 173 S~~EIYnE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH 252 (376)
T 2rep_A 173 SYVEIYNETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSH 252 (376)
T ss_dssp EEEEEETTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CGGGSE
T ss_pred EEEEEECCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCCCCce
Confidence 99999999999999874 235788887 67899999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEEeecCCCCceEEEEEEEEEcCCCcc---cccch----hhHHHHHhhhhhHHHHHHHHHHhcCCCCCCCCCCC
Q 005372 236 GVLVISVSTLLGDDSKAALTGKLNLIDLADNRR---TCNEG----IRLLESAKINQSLFALSNVIHALNNNKPRVPYRES 308 (699)
Q Consensus 236 ~If~I~V~~~~~~~~~~~~~skL~fVDLAGser---t~~~g----~rl~E~~~INkSL~aLg~VI~aL~~~~~~IPYRdS 308 (699)
+||+|+|.+.... ......|+|+||||||+|| +++.| .|++|+..||+||++||+||.+|++++.|||||||
T Consensus 253 ~Ifti~v~~~~~~-~~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdS 331 (376)
T 2rep_A 253 SVFQLQISGEHSS-RGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKESHVPYRNS 331 (376)
T ss_dssp EEEEEEEEEEESS-SCCEEEEEEEEEECCCCC------------------------CHHHHHHHHHHHHTTCSCCCGGGS
T ss_pred EEEEEEEEEEecC-CCcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhcCCCccCCcCC
Confidence 9999999986543 3345679999999999998 45567 89999999999999999999999999999999999
Q ss_pred hhhhhcccccCCCceeEEEEEeCCC--ChhhhHHHHHHHHHhhhc
Q 005372 309 KLTRILQDSLGGTSHALMVACLNPG--EYQESVHTVSLAARSRHI 351 (699)
Q Consensus 309 KLTrLLqdsLgGnskt~mI~~VSP~--~~~ETlsTL~fA~rar~I 351 (699)
||||||||+||||++|+||+||||+ +++||++||+||+|++++
T Consensus 332 kLT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 332 KLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp HHHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999997 589999999999999863
No 23
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-78 Score=656.58 Aligned_cols=313 Identities=29% Similarity=0.482 Sum_probs=247.7
Q ss_pred CCCCCeEEEEEcCCCCChhhhhhcCCCeeEEEEcCCCCcccCcceEEEecCC-------CCCCceeeeeceeeCCCCCcH
Q 005372 23 STSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDP-------DTIRSECYQLDSFFGQEDESV 95 (699)
Q Consensus 23 ~~~~~VrV~vRvRP~~~~E~~~~~~~~~~~i~v~d~~~~~~~~~~~i~~~~~-------~~~~~~~F~FD~VF~~~~~sQ 95 (699)
...++|||+|||||+.+.|.. ++.+.+... .+.+..... .....+.|.||+||+ + ++|
T Consensus 21 ~~~~~i~V~vRvRP~~~~e~~--------~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~-~sQ 85 (359)
T 3nwn_A 21 GTRKKVHAFVRVKPTDDFAHE--------MIRYGDDKR-----SIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-D-ASQ 85 (359)
T ss_dssp ---CCEEEEEEECCCSSCCTT--------TEEECTTSS-----EEEEECCCCSSHHHHTTSCCEEEEECSEEEE-S-CCH
T ss_pred CCCCCEEEEEEcCCCCccccc--------ceeecCCCc-----EEEEecCCccccccccCCcCceEeecCccCC-C-CCH
Confidence 346899999999999876632 122222111 112221111 112346799999997 3 478
Q ss_pred hHHHHhhccchhhhhcCCCCEEEEeeccCCCCCcceeccCCC---CCCchHHHHHHHHHhhhc---CCceeEEEEEEEec
Q 005372 96 SKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEE---RPGLMPLAMSKILSICQS---TGSTAEISYYEVYM 169 (699)
Q Consensus 96 ~~Vf~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTm~G~~~---~~GIipral~~LF~~~~~---~~~~v~vS~~EIYn 169 (699)
++||+.+++|+|+++++|||+||||||||||||||||+|... ++|||||++++||+.++. ..+.|++||+||||
T Consensus 86 ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~~~~~~~~v~vS~~EIYn 165 (359)
T 3nwn_A 86 DLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYN 165 (359)
T ss_dssp HHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEET
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhcCCCCcEEEEEEEEEEec
Confidence 999999999999999999999999999999999999999754 479999999999998764 45789999999999
Q ss_pred ceeeeccCCC------ccceeeeecCCCCeEecCCEEEEeCChhHHHHHHHHHHhcCcccccCCCCCCCCceEEEEEEEE
Q 005372 170 DRCYDLLEVK------TKEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVS 243 (699)
Q Consensus 170 E~v~DLL~~~------~~~l~i~ed~~~~v~v~gLsev~V~S~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~V~ 243 (699)
|+++|||++. ...+.+++++. ++++.|++++.|.+.+|++++|..|..+|++++|.+|..|||||+||+|+|.
T Consensus 166 E~i~DLL~~~~~~~~~~~~~~~~~~~~-g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~ 244 (359)
T 3nwn_A 166 ESLFDLLSTLPYVGPSVTPMTIVENPQ-GVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLE 244 (359)
T ss_dssp TEEEETTSSSTTSCTTTSCCEEEEETT-EEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEE
T ss_pred cccccccccccccccccccceEEecCC-ceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEE
Confidence 9999999853 23466777765 5999999999999999999999999999999999999999999999999998
Q ss_pred EeecC-CCCceEEEEEEEEEcCCCcc---cccchhhHHHHHhhhhhHHHHHHHHHHhcCC-CCCCCCCCChhhhhccccc
Q 005372 244 TLLGD-DSKAALTGKLNLIDLADNRR---TCNEGIRLLESAKINQSLFALSNVIHALNNN-KPRVPYRESKLTRILQDSL 318 (699)
Q Consensus 244 ~~~~~-~~~~~~~skL~fVDLAGser---t~~~g~rl~E~~~INkSL~aLg~VI~aL~~~-~~~IPYRdSKLTrLLqdsL 318 (699)
+.... .......|+|+||||||+|| +++.|.|++|+..||+||++||+||.+|+++ +.||||||||||+||||+|
T Consensus 245 ~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT~lLqdsL 324 (359)
T 3nwn_A 245 AHSRTLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSL 324 (359)
T ss_dssp EC-------CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHH
T ss_pred eecccccCcccccccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhcCCCcCCcccCHHHHHHHHhc
Confidence 75432 23445679999999999998 5667899999999999999999999999875 5699999999999999999
Q ss_pred CCCceeEEEEEeCCC--ChhhhHHHHHHHHHhhhc
Q 005372 319 GGTSHALMVACLNPG--EYQESVHTVSLAARSRHI 351 (699)
Q Consensus 319 gGnskt~mI~~VSP~--~~~ETlsTL~fA~rar~I 351 (699)
||||+|+||+||||+ +++||++||+||+|||+|
T Consensus 325 gGnskt~mI~~isP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 325 GGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp SSSSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred CCCccEEEEEEeCCchhhHHHHHHHHHHHHHHcCC
Confidence 999999999999997 689999999999999986
No 24
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=1.5e-78 Score=655.97 Aligned_cols=318 Identities=29% Similarity=0.477 Sum_probs=251.4
Q ss_pred CCCCCCCCCCeEEEEEcCCCCChhhhhhcCCCeeEEEEcCCCCcccCcceEEEecCCC-------CCCceeeeeceeeCC
Q 005372 18 IPNSTSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPD-------TIRSECYQLDSFFGQ 90 (699)
Q Consensus 18 ~~~~~~~~~~VrV~vRvRP~~~~E~~~~~~~~~~~i~v~d~~~~~~~~~~~i~~~~~~-------~~~~~~F~FD~VF~~ 90 (699)
.+.+....++|||+|||||+.+.+. .++.+.+.. ..+.+...... ....+.|.||+||+
T Consensus 15 ~~~~~~~~g~IrV~vRvRP~~~~~~--------~~~~~~~~~-----~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~- 80 (358)
T 2nr8_A 15 VPRGSGTRKKVHAFVRVKPTDDFAH--------EMIRYGDDK-----RSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH- 80 (358)
T ss_dssp --------CCEEEEEEECCCSSCCT--------TTEEECTTS-----SEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-
T ss_pred ccCCCCCCCCeEEEEEcCCCCCCcc--------ceeEECCCC-----CEEEEecCCccccccccCCCcceEEECCeecC-
Confidence 3455567899999999999865431 233443321 12233332211 12346799999995
Q ss_pred CCCcHhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCcceeccCCCC---CCchHHHHHHHHHhhhc---CCceeEEEE
Q 005372 91 EDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEER---PGLMPLAMSKILSICQS---TGSTAEISY 164 (699)
Q Consensus 91 ~~~sQ~~Vf~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTm~G~~~~---~GIipral~~LF~~~~~---~~~~v~vS~ 164 (699)
+ ++|++||+.+++|+|+++++|||+||||||||||||||||+|+.++ +|||||++++||+.++. ..+.|++||
T Consensus 81 ~-~sQ~~Vy~~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~i~~~~~~~~~v~vS~ 159 (358)
T 2nr8_A 81 D-ASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSY 159 (358)
T ss_dssp S-CCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEE
T ss_pred C-cCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHHHHHHHhhcCCceEEEEEEE
Confidence 4 4889999999999999999999999999999999999999998764 89999999999998865 357999999
Q ss_pred EEEecceeeeccCCC------ccceeeeecCCCCeEecCCEEEEeCChhHHHHHHHHHHhcCcccccCCCCCCCCceEEE
Q 005372 165 YEVYMDRCYDLLEVK------TKEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVL 238 (699)
Q Consensus 165 ~EIYnE~v~DLL~~~------~~~l~i~ed~~~~v~v~gLsev~V~S~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If 238 (699)
+|||||+|+|||++. ..++.+++++ .+++|.|++++.|.+.+|++++|..|.++|++++|.+|+.|||||+||
T Consensus 160 ~EIYnE~i~DLL~~~~~~~~~~~~l~i~e~~-~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If 238 (358)
T 2nr8_A 160 LEIYNESLFDLLSTLPYVGPSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIF 238 (358)
T ss_dssp EEEETTEEEETTSSSTTSCTTTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEE
T ss_pred EEEeCCeeeECcCCccccCccCCceEEEECC-CceEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEE
Confidence 999999999999863 3578899998 679999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeecC-CCCceEEEEEEEEEcCCCcc---cccchhhHHHHHhhhhhHHHHHHHHHHhcCC-CCCCCCCCChhhhh
Q 005372 239 VISVSTLLGD-DSKAALTGKLNLIDLADNRR---TCNEGIRLLESAKINQSLFALSNVIHALNNN-KPRVPYRESKLTRI 313 (699)
Q Consensus 239 ~I~V~~~~~~-~~~~~~~skL~fVDLAGser---t~~~g~rl~E~~~INkSL~aLg~VI~aL~~~-~~~IPYRdSKLTrL 313 (699)
+|+|.+.... .......|+|+||||||+|| ++..|.|++|+..||+||++||+||.+|+++ ..||||||||||+|
T Consensus 239 ~i~v~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hiPyRdSkLT~L 318 (358)
T 2nr8_A 239 TIYLEAHSRTLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHA 318 (358)
T ss_dssp EEEEEEC-------CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHH
T ss_pred EEEEEEEeccCCCCCEEEEEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccCHHHHH
Confidence 9999875432 23345689999999999998 5667899999999999999999999999875 46999999999999
Q ss_pred cccccCCCceeEEEEEeCCC--ChhhhHHHHHHHHHhhhc
Q 005372 314 LQDSLGGTSHALMVACLNPG--EYQESVHTVSLAARSRHI 351 (699)
Q Consensus 314 LqdsLgGnskt~mI~~VSP~--~~~ETlsTL~fA~rar~I 351 (699)
|||+|||||+|+||+||||+ +++||++||+||+|+|.|
T Consensus 319 LqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 319 LKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp THHHHSSSSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred HHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999997 689999999999999976
No 25
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=5.9e-78 Score=661.74 Aligned_cols=316 Identities=31% Similarity=0.489 Sum_probs=259.4
Q ss_pred CCCeEEEEEcCCCCChhhhhhcCCCeeEEEEcCCCCcccCcceEEEecCCC---CCCceeeeeceeeCCCCCcHhHHHHh
Q 005372 25 SSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPD---TIRSECYQLDSFFGQEDESVSKIFYS 101 (699)
Q Consensus 25 ~~~VrV~vRvRP~~~~E~~~~~~~~~~~i~v~d~~~~~~~~~~~i~~~~~~---~~~~~~F~FD~VF~~~~~sQ~~Vf~~ 101 (699)
.++|||+|||||+++.|.... .+.+...+... +.+...+.. ....+.|.||+||++++ +|++||+
T Consensus 58 ~gnIrV~vRvRP~~~~E~~~~----~~~~~~~~~~~------v~~~~~~~~~~~~~~~~~F~FD~VF~~~~-~Q~~Vf~- 125 (412)
T 3u06_A 58 RDNIRVFCRIRPPLESEENRM----CCTWTYHDEST------VELQSIDAQAKSKMGQQIFSFDQVFHPLS-SQSDIFE- 125 (412)
T ss_dssp TCSEEEEEEECCCCGGGTTSC----BCEEEEEETTE------EEEECCC-------CCCEEECSEEECTTC-CHHHHHT-
T ss_pred CCCEEEEEEcCCCCchhccCc----ceEEEecCCCE------EEEecCCcccccccCceEEeeCeEcCCCC-CHHHHHH-
Confidence 589999999999998885321 22333333321 122211111 11246799999999986 8899997
Q ss_pred hccchhhhhcCCCCEEEEeeccCCCCCcceeccCCCCCCchHHHHHHHHHhhhc-----CCceeEEEEEEEecceeeecc
Q 005372 102 EVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMSKILSICQS-----TGSTAEISYYEVYMDRCYDLL 176 (699)
Q Consensus 102 ~v~plV~~vl~G~N~tIfAYGqTGSGKTyTm~G~~~~~GIipral~~LF~~~~~-----~~~~v~vS~~EIYnE~v~DLL 176 (699)
.+.|+|+++++|||+||||||||||||||||+|.++++|||||++++||+.++. ..+.|.+||+|||||+|+|||
T Consensus 126 ~v~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL 205 (412)
T 3u06_A 126 MVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLL 205 (412)
T ss_dssp TTHHHHHHHHTTCCEEEEEESSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETT
T ss_pred HHHHHHHHHHCCCceEEEEecCCCCCCeeEecCCCCCCccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeCCeeEEcC
Confidence 578999999999999999999999999999999999999999999999998753 357899999999999999999
Q ss_pred CCCccce--eeeecCCCCeEecCCEEEEeCChhHHHHHHHHHHhcCcccccCCCCCCCCceEEEEEEEEEeecCCCCceE
Q 005372 177 EVKTKEI--SILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAAL 254 (699)
Q Consensus 177 ~~~~~~l--~i~ed~~~~v~v~gLsev~V~S~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~~~~~~ 254 (699)
++....+ .+.+++.++++|.|++++.|.+++|++.+|..|..+|++++|.+|+.|||||+||+|+|.+.... .....
T Consensus 206 ~~~~~~~~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-~~~~~ 284 (412)
T 3u06_A 206 SNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAE-KQEIS 284 (412)
T ss_dssp CCSCCCCCEEECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEEETT-TTEEE
T ss_pred CCCCCCceeeeeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEEeCC-CCCEE
Confidence 8776654 44567889999999999999999999999999999999999999999999999999999887643 33456
Q ss_pred EEEEEEEEcCCCcccccchhhHHHHHhhhhhHHHHHHHHHHhcCCCCCCCCCCChhhhhcccccCCCceeEEEEEeCCC-
Q 005372 255 TGKLNLIDLADNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDSLGGTSHALMVACLNPG- 333 (699)
Q Consensus 255 ~skL~fVDLAGsert~~~g~rl~E~~~INkSL~aLg~VI~aL~~~~~~IPYRdSKLTrLLqdsLgGnskt~mI~~VSP~- 333 (699)
.|+|+||||||+|+. ..+.|++|+.+||+||++||+||.+|++++.||||||||||+||||+||||++|+||+||||+
T Consensus 285 ~~kL~lVDLAGSEr~-~~~~rl~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~LLqdsLgGnskt~mI~~vsP~~ 363 (412)
T 3u06_A 285 VGSINLVDLAGSESP-KTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQ 363 (412)
T ss_dssp EEEEEEEECCCCCC-----------CTTTHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHHGGGTSTTCEEEEEEEECCBG
T ss_pred EEEEEEEECCCCCcC-CccchhHhHHHHhHHHHHHHHHHHHHhccCCCCCccccHHHHHHHHhcCCCceEEEEEEeCCCh
Confidence 799999999999986 467899999999999999999999999999999999999999999999999999999999997
Q ss_pred -ChhhhHHHHHHHHHhhhcccc
Q 005372 334 -EYQESVHTVSLAARSRHISNT 354 (699)
Q Consensus 334 -~~~ETlsTL~fA~rar~I~N~ 354 (699)
+++||++||+||+|++.|+..
T Consensus 364 ~~~~ETl~TLrfA~rv~~i~~~ 385 (412)
T 3u06_A 364 DCFQESVKSLRFAASVNSCKMT 385 (412)
T ss_dssp GGHHHHHHHHHHHHHHHHHCC-
T ss_pred hhHHHHHHHHHHHHHHhhcccc
Confidence 599999999999999999863
No 26
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-77 Score=652.13 Aligned_cols=319 Identities=30% Similarity=0.456 Sum_probs=259.2
Q ss_pred CCCeEEEEEcCCCCChhhhhhcCCCeeEEEEcCCCCcccCcceEEEec-CCCCCCceeeeeceeeCCCCCcHhHHHHhhc
Q 005372 25 SSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLK-DPDTIRSECYQLDSFFGQEDESVSKIFYSEV 103 (699)
Q Consensus 25 ~~~VrV~vRvRP~~~~E~~~~~~~~~~~i~v~d~~~~~~~~~~~i~~~-~~~~~~~~~F~FD~VF~~~~~sQ~~Vf~~~v 103 (699)
+|+|||+|||||+.+.+... ...++.+...+... ....+.+. .......+.|.||+||++++ +|++||+. +
T Consensus 58 kgnIrV~vRvRP~~~~~e~~----~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~F~FD~VF~~~~-~Q~~Vf~~-v 129 (403)
T 4etp_A 58 RGNIRVYLRIRPALKNLENS----DTSLINVNEFDDNS--GVQSMEVTKIQNTAQVHEFKFDKIFDQQD-TNVDVFKE-V 129 (403)
T ss_dssp HCSEEEEEEECCCCTTTSCS----CCTTEEECCCBTTT--TBEEEEEEECSSSCEEEEEEESEEECTTC-CHHHHHHH-H
T ss_pred CCCeEEEEEeCCCCCccccc----CCCeeEEeeccCCC--CceEEEEecCCCCcCceEEEcCEEECCCC-chHHHHHH-H
Confidence 58999999999998763211 12233333211100 11222222 22233457899999999986 88999986 6
Q ss_pred cchhhhhcCCCCEEEEeeccCCCCCcceeccCCCCCCchHHHHHHHHHhhhc-----CCceeEEEEEEEecceeeeccCC
Q 005372 104 NPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMSKILSICQS-----TGSTAEISYYEVYMDRCYDLLEV 178 (699)
Q Consensus 104 ~plV~~vl~G~N~tIfAYGqTGSGKTyTm~G~~~~~GIipral~~LF~~~~~-----~~~~v~vS~~EIYnE~v~DLL~~ 178 (699)
.|+|+++++|||+||||||||||||||||+|+ ++|||||++++||+.++. ..+.|.+||+|||||+|+|||.+
T Consensus 130 ~~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~--~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~ 207 (403)
T 4etp_A 130 GQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRS 207 (403)
T ss_dssp HHHHHHHHTTCCEEEEEESCTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEETTEEEETTCC
T ss_pred HHHHHHHhCCcceEEEEECCCCCCCceEeCCC--CCccchhHHHHHHHHHHhhhccCceEEEEEEEEEEecceeeEccCC
Confidence 79999999999999999999999999999996 459999999999998753 35789999999999999999986
Q ss_pred Cc---------cceeeeecC-CCCeEecCCEEEEeCChhHHHHHHHHHHhcCcccccCCCCCCCCceEEEEEEEEEeecC
Q 005372 179 KT---------KEISILDDK-DGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGD 248 (699)
Q Consensus 179 ~~---------~~l~i~ed~-~~~v~v~gLsev~V~S~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~ 248 (699)
.. ..+.+++++ .++++|.|++++.|.+++|++.+|..|..+|++++|.||+.|||||+||+|+|.+....
T Consensus 208 ~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~ 287 (403)
T 4etp_A 208 DNNNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAK 287 (403)
T ss_dssp --------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHHHHHTSEEEEEEEEEEEETT
T ss_pred ccccccccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCcccCCcccEEEEEEEEeecC
Confidence 53 245566654 56799999999999999999999999999999999999999999999999999987643
Q ss_pred CCCceEEEEEEEEEcCCCcc---cccchhhHHHHHhhhhhHHHHHHHHHHhcCCCC---CCCCCCChhhhhcccccCCCc
Q 005372 249 DSKAALTGKLNLIDLADNRR---TCNEGIRLLESAKINQSLFALSNVIHALNNNKP---RVPYRESKLTRILQDSLGGTS 322 (699)
Q Consensus 249 ~~~~~~~skL~fVDLAGser---t~~~g~rl~E~~~INkSL~aLg~VI~aL~~~~~---~IPYRdSKLTrLLqdsLgGns 322 (699)
. +....|+|+||||||+|| ++..|.|++|+.+||+||++||+||.+|+++.. ||||||||||+||||+|||||
T Consensus 288 ~-~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~LLqdsLgGns 366 (403)
T 4etp_A 288 T-GAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDS 366 (403)
T ss_dssp T-CCEEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTSCCCGGGSHHHHHTGGGTSTTC
T ss_pred C-CCeeEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccchHHHHHHHhcCCCc
Confidence 3 345679999999999998 567789999999999999999999999987654 999999999999999999999
Q ss_pred eeEEEEEeCCC--ChhhhHHHHHHHHHhhhcccc
Q 005372 323 HALMVACLNPG--EYQESVHTVSLAARSRHISNT 354 (699)
Q Consensus 323 kt~mI~~VSP~--~~~ETlsTL~fA~rar~I~N~ 354 (699)
+|+||+||||+ +++||++||+||+|++.|+..
T Consensus 367 kt~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~ 400 (403)
T 4etp_A 367 KTLMFVNISPSSSHINETLNSLRFASKVNSTRLV 400 (403)
T ss_dssp EEEEEEEECCSGGGHHHHHHHHHHHHHHCCC---
T ss_pred eEEEEEEeCCchhhHHHHHHHHHHHHHHhhcccC
Confidence 99999999998 689999999999999999874
No 27
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=6.7e-77 Score=640.04 Aligned_cols=309 Identities=25% Similarity=0.425 Sum_probs=238.6
Q ss_pred CCCCCCCCCCCCeEEEEEcCCCCChhhhhhcCCCeeEEEEcCCCCcccCcceEEEecCCCCCCceeeeeceeeCCCCCcH
Q 005372 16 STIPNSTSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSFFGQEDESV 95 (699)
Q Consensus 16 ~~~~~~~~~~~~VrV~vRvRP~~~~E~~~~~~~~~~~i~v~d~~~~~~~~~~~i~~~~~~~~~~~~F~FD~VF~~~~~sQ 95 (699)
+...|+....++|||+|||||+.+.|... ...++.+.+... ...+.+. .+.|.||+||++++ +|
T Consensus 12 ~~r~m~~~~~~~VrV~vRvRP~~~~e~~~----~~~~v~~~~~~~-----~~~~~~~------~~~F~FD~Vf~~~~-sQ 75 (344)
T 3dc4_A 12 RRRGMEGAKLSAVRIAVREAPYRQFLGRR----EPSVVQFPPWSD-----GKSLIVD------QNEFHFDHAFPATI-SQ 75 (344)
T ss_dssp -------CCCSEEEEEEEECCCC-----------CCSEECCSSSC-----SSEEEET------TEEEECSEEECTTC-CH
T ss_pred ccCCCCCCCCCCeEEEEECCCCCcccccC----CceEEEecCCCC-----CceEEec------CcEEEcceEECCCC-CH
Confidence 35678888999999999999998876321 234455433111 1122222 35799999999986 88
Q ss_pred hHHHHhhccchhhhhcCCCCEEEEeeccCCCCCcceeccCC------CCCCchHHHHHHHHHhhhc------CCceeEEE
Q 005372 96 SKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSE------ERPGLMPLAMSKILSICQS------TGSTAEIS 163 (699)
Q Consensus 96 ~~Vf~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTm~G~~------~~~GIipral~~LF~~~~~------~~~~v~vS 163 (699)
++||+.+++|+|+++++|||+||||||||||||||||+|+. +++|||||++++||+.++. ..+.|++|
T Consensus 76 ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS 155 (344)
T 3dc4_A 76 DEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYAS 155 (344)
T ss_dssp HHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEE
T ss_pred HHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEE
Confidence 99999999999999999999999999999999999999874 5689999999999998753 24789999
Q ss_pred EEEEecceeeeccCCCccceeeeecCCCCeEecCCEEEEeCChhHHHHHHHHHHhcCcccccCCCCCCCCceEEEEEEEE
Q 005372 164 YYEVYMDRCYDLLEVKTKEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVS 243 (699)
Q Consensus 164 ~~EIYnE~v~DLL~~~~~~l~i~ed~~~~v~v~gLsev~V~S~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~V~ 243 (699)
|+|||||+|+|||++......+ ...+.|++++.|.+.+|++++|..|.++|++++|.||..|||||+||+|+|.
T Consensus 156 ~~EIYnE~i~DLL~~~~~~~~~------~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~ 229 (344)
T 3dc4_A 156 FIEIYNEKPFDLLGSTPHMPMV------AARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVK 229 (344)
T ss_dssp EEEEESSCEEETTSSCTTSBCC------SSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEE
T ss_pred EEEEeCCeeEEccCCCCCCccc------cccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEE
Confidence 9999999999999876532211 1234589999999999999999999999999999999999999999999997
Q ss_pred EeecCCCCceEEEEEEEEEcCCCcc---cccchhhHHHHHhhhhhHHHHHHHHHHhcCCCCCCCCCCChhhhhcccccCC
Q 005372 244 TLLGDDSKAALTGKLNLIDLADNRR---TCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDSLGG 320 (699)
Q Consensus 244 ~~~~~~~~~~~~skL~fVDLAGser---t~~~g~rl~E~~~INkSL~aLg~VI~aL~~~~~~IPYRdSKLTrLLqdsLgG 320 (699)
+. ...|+|+||||||+|| ++..|.+++|+.+||+||++||+||.+|++++.||||||||||+||||+|||
T Consensus 230 ~~-------~~~skl~lVDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~lLqdsLgG 302 (344)
T 3dc4_A 230 SK-------THHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTA 302 (344)
T ss_dssp CS-------SCEEEEEEEECCCCCCC-------------CCSCCHHHHHHHHHHHHHTTCSSCCGGGSHHHHHTTTTSST
T ss_pred ec-------CcEEEEEEEECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhccCCcCCccccHHHHHHHHHhCC
Confidence 53 2479999999999997 5677899999999999999999999999999999999999999999999999
Q ss_pred CceeEEEEEeCCC--ChhhhHHHHHHHHHhhhccc
Q 005372 321 TSHALMVACLNPG--EYQESVHTVSLAARSRHISN 353 (699)
Q Consensus 321 nskt~mI~~VSP~--~~~ETlsTL~fA~rar~I~N 353 (699)
|++|+||+||||+ +++||++||+||+|+++..-
T Consensus 303 nskt~mIa~isP~~~~~~ETlsTL~fA~ra~~~~~ 337 (344)
T 3dc4_A 303 QSYLTFLACISPHQCDLSETLSTLRFGTSAKAAAL 337 (344)
T ss_dssp TCEEEEEEEECCCGGGHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEEEeCCchhhHHHHHHHHHHHHHHhhcCC
Confidence 9999999999997 68999999999999998754
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=4e-72 Score=656.09 Aligned_cols=319 Identities=32% Similarity=0.496 Sum_probs=247.9
Q ss_pred CCCeEEEEEcC----CCCChhhhhhcCCCeeEEEEcCCCCcc--cCcceEEEecCCCCCCceeeeeceeeCCCCCcHhHH
Q 005372 25 SSKVRVIVRVR----PFLSQEIAAKNGNSICCISVLDRGSLS--CNEEVAVYLKDPDTIRSECYQLDSFFGQEDESVSKI 98 (699)
Q Consensus 25 ~~~VrV~vRvR----P~~~~E~~~~~~~~~~~i~v~d~~~~~--~~~~~~i~~~~~~~~~~~~F~FD~VF~~~~~sQ~~V 98 (699)
..++||||||| |.+..|...+ +.. +.+..++.+. .+.++++..+.......+.|.||+||++++ +|++|
T Consensus 373 l~~~rV~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fd~vf~~~~-~q~~v 447 (715)
T 4h1g_A 373 KGNIRVFCRIRNVSSSSSSSSSSSS--EDI--IQYEAPQDINDESKQELVITRNINNNFSNLRFLFDKIFEREQ-SNDLV 447 (715)
T ss_dssp SCSEEEEEEECCCC---------------B--CEEECCC-------CEEEEEEEETTEEEEEEEECSEEECSSC-CHHHH
T ss_pred HhcCeEEEEEecccccccccccccc--ccc--eeccCCCCCCCCCCCeEEEcCCCCCCCCCeEEEeceEeCCCC-CHHHH
Confidence 47899999999 5554443332 222 3344443322 223455554445555678999999999886 88999
Q ss_pred HHhhccchhhhhcCCCCEEEEeeccCCCCCcceeccCCCCCCchHHHHHHHHHhhhc-----CCceeEEEEEEEecceee
Q 005372 99 FYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMSKILSICQS-----TGSTAEISYYEVYMDRCY 173 (699)
Q Consensus 99 f~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTm~G~~~~~GIipral~~LF~~~~~-----~~~~v~vS~~EIYnE~v~ 173 (699)
|+. +.|+|+++++|||+||||||||||||||||+|. ++|||||++++||+.++. ..+.|++||+|||||+|+
T Consensus 448 ~~~-~~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~--~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiyne~i~ 524 (715)
T 4h1g_A 448 FEE-LSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP--TNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIV 524 (715)
T ss_dssp GGG-THHHHHHHHTTCCEEEEEESSTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEE
T ss_pred HHH-HHHHHHHHhCCceEEEEccCCCCCchhhccCCC--CCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEECCEEE
Confidence 985 679999999999999999999999999999994 579999999999998753 246899999999999999
Q ss_pred eccCCCc---cceeeee-cCCCCeEecCCEEEEeCChhHHHHHHHHHHhcCcccccCCCCCCCCceEEEEEEEEEeecCC
Q 005372 174 DLLEVKT---KEISILD-DKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDD 249 (699)
Q Consensus 174 DLL~~~~---~~l~i~e-d~~~~v~v~gLsev~V~S~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~ 249 (699)
|||++.. ..+.+++ +..|+++|.||+++.|.|.+|++++|..|..+|++++|.+|.+|||||+||+|+|.+....
T Consensus 525 DLl~~~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~~~~~~~~- 603 (715)
T 4h1g_A 525 DLLNPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSL- 603 (715)
T ss_dssp ESSSCCCCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEEEEEEEEEETT-
T ss_pred ECCCCCCCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEEEEEEEEEecC-
Confidence 9998653 3455655 4566799999999999999999999999999999999999999999999999999887543
Q ss_pred CCceEEEEEEEEEcCCCcc---cccchhhHHHHHhhhhhHHHHHHHHHHhcC-CCCCCCCCCChhhhhcccccCCCceeE
Q 005372 250 SKAALTGKLNLIDLADNRR---TCNEGIRLLESAKINQSLFALSNVIHALNN-NKPRVPYRESKLTRILQDSLGGTSHAL 325 (699)
Q Consensus 250 ~~~~~~skL~fVDLAGser---t~~~g~rl~E~~~INkSL~aLg~VI~aL~~-~~~~IPYRdSKLTrLLqdsLgGnskt~ 325 (699)
......|+|+||||||+|| ++..|.|++|+.+||+||++|++||.+|+. +..|||||||||||||||+|||||+|+
T Consensus 604 ~~~~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~~~~~vpyR~SkLT~lL~~slggn~~t~ 683 (715)
T 4h1g_A 604 TKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNSKTL 683 (715)
T ss_dssp TCCEEEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHCSCCCCCGGGCHHHHHTGGGTSTTCEEE
T ss_pred CCCEeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccCHHHHHHHhhcCCCceEE
Confidence 3345689999999999998 556789999999999999999999999975 458999999999999999999999999
Q ss_pred EEEEeCCC--ChhhhHHHHHHHHHhhhcc
Q 005372 326 MVACLNPG--EYQESVHTVSLAARSRHIS 352 (699)
Q Consensus 326 mI~~VSP~--~~~ETlsTL~fA~rar~I~ 352 (699)
||+||||+ +++||++||+||+|+|+|+
T Consensus 684 ~i~~isp~~~~~~et~~tL~fa~r~~~i~ 712 (715)
T 4h1g_A 684 MFVNISPLTKDLNETINSLRFATKVNNTR 712 (715)
T ss_dssp EEEEECCBGGGHHHHHHHHHHHHHHCC--
T ss_pred EEEEECCChhhHHHHHHHHHHHHHhccce
Confidence 99999997 6899999999999999986
No 29
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.92 E-value=2.1e-26 Score=205.49 Aligned_cols=82 Identities=44% Similarity=0.667 Sum_probs=76.0
Q ss_pred HhhhhhHHHHHHHHHHhcCC-CCCCCCCCChhhhhcccccCCCceeEEEEEeCCC--ChhhhHHHHHHHHHhhhccccCC
Q 005372 280 AKINQSLFALSNVIHALNNN-KPRVPYRESKLTRILQDSLGGTSHALMVACLNPG--EYQESVHTVSLAARSRHISNTLP 356 (699)
Q Consensus 280 ~~INkSL~aLg~VI~aL~~~-~~~IPYRdSKLTrLLqdsLgGnskt~mI~~VSP~--~~~ETlsTL~fA~rar~I~N~~~ 356 (699)
.+||+||++||+||.+|+++ ..||||||||||+||||+||||++|+||+||||+ +++||++||+||+|++.|+|.+.
T Consensus 2 ~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~~ 81 (100)
T 2kin_B 2 KNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVS 81 (100)
T ss_dssp CBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEEC
T ss_pred CcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcce
Confidence 57999999999999999987 5899999999999999999999999999999997 68999999999999999999877
Q ss_pred Ccccc
Q 005372 357 SAQKV 361 (699)
Q Consensus 357 ~~~~~ 361 (699)
.|...
T Consensus 82 ~n~~~ 86 (100)
T 2kin_B 82 VNLEL 86 (100)
T ss_dssp CEEEC
T ss_pred eccCC
Confidence 66443
No 30
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.89 E-value=4.3e-24 Score=196.21 Aligned_cols=80 Identities=44% Similarity=0.679 Sum_probs=74.6
Q ss_pred hhhHHHHHHHHHHhcCCC-CCCCCCCChhhhhcccccCCCceeEEEEEeCCC--ChhhhHHHHHHHHHhhhccccCCCcc
Q 005372 283 NQSLFALSNVIHALNNNK-PRVPYRESKLTRILQDSLGGTSHALMVACLNPG--EYQESVHTVSLAARSRHISNTLPSAQ 359 (699)
Q Consensus 283 NkSL~aLg~VI~aL~~~~-~~IPYRdSKLTrLLqdsLgGnskt~mI~~VSP~--~~~ETlsTL~fA~rar~I~N~~~~~~ 359 (699)
|+||++||+||.+|+++. .||||||||||+||||+||||++|+||+||+|+ +++||++||+||+||+.|+|.+..|.
T Consensus 1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~ 80 (117)
T 3kin_B 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNL 80 (117)
T ss_dssp CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCB
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecC
Confidence 899999999999999874 699999999999999999999999999999998 68999999999999999999888776
Q ss_pred ccC
Q 005372 360 KVQ 362 (699)
Q Consensus 360 ~~~ 362 (699)
...
T Consensus 81 ~~~ 83 (117)
T 3kin_B 81 ELT 83 (117)
T ss_dssp CCC
T ss_pred cCC
Confidence 543
No 31
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.87 E-value=5.8e-23 Score=212.12 Aligned_cols=256 Identities=9% Similarity=0.075 Sum_probs=170.8
Q ss_pred CCCeEEEEEcCCCC-ChhhhhhcCCCeeEEEEcCCCCcccCcceEEEecCCCCCCceeeeeceeeCCCCCcHh--HHHHh
Q 005372 25 SSKVRVIVRVRPFL-SQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSFFGQEDESVS--KIFYS 101 (699)
Q Consensus 25 ~~~VrV~vRvRP~~-~~E~~~~~~~~~~~i~v~d~~~~~~~~~~~i~~~~~~~~~~~~F~FD~VF~~~~~sQ~--~Vf~~ 101 (699)
+|+|||||||||.. +. .+.+...+. . +.+.. ..+.|.||+||+++. .|+ +||++
T Consensus 23 KGnIRVFcrvrp~~~p~---------~~~v~y~~~-------~--I~v~~----~~k~f~FDRVf~p~s-~Qe~~~vf~E 79 (298)
T 2o0a_A 23 KGTMRCYAYVMEQNLPE---------NLLFDYENG-------V--ITQGL----SEHVYKFNRVIPHLK-VSEDKFFTQE 79 (298)
T ss_dssp HTCCEEEEEECGGGSCT---------TEEEETTTT-------E--EEETT----TCCEEECSEEEETTT-SCHHHHHHHT
T ss_pred hCceEEEEEeccccCCc---------cceeecCcc-------c--eeecC----CCceEEeeeEECccc-cccHHHHHHH
Confidence 58999999999954 31 111322221 1 22222 126899999999986 767 88875
Q ss_pred hccchhhhhcC-CCCEEEEeeccCCCCCcceeccCCCCCCchHHHHHHHHHhhhc---CCceeEEEEEEEe-cceeeecc
Q 005372 102 EVNPLIPGIFH-GRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMSKILSICQS---TGSTAEISYYEVY-MDRCYDLL 176 (699)
Q Consensus 102 ~v~plV~~vl~-G~N~tIfAYGqTGSGKTyTm~G~~~~~GIipral~~LF~~~~~---~~~~v~vS~~EIY-nE~v~DLL 176 (699)
+.++|+++++ |||+||||||||||||| ||++..+|..... +.+.+.++|+||| ||.++|||
T Consensus 80 -~~~~i~scLd~GyNvcIfSyGQTGsGKT-------------~ral~q~f~~~~~~~~~~Y~~tlq~veLy~Ne~~~DLL 145 (298)
T 2o0a_A 80 -YSVYHDMCLNQKKNFNLISLSTTPHGSL-------------RESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDML 145 (298)
T ss_dssp -THHHHHHHHHTTCCEEEEEECSSCCHHH-------------HHHHHHHHHSTTSHHHHHEEEEEEEEEEECC-CEEETT
T ss_pred -HHHHHHHHHhCCCceEEEEECCCCCCcc-------------HHHHHHHHHHhhhhcccceEEEEEEEEEecCCchHHhc
Confidence 9999999999 99999999999999999 9999999987754 7889999999999 99999999
Q ss_pred CCC--ccceeeeecCCCCeEecCCEEEEeCC-hhHHHHHHHHHHhcCcccccCCCCCCCCceEEEEEEEEEeecCCCC--
Q 005372 177 EVK--TKEISILDDKDGQLHLKGLSRVPVNS-MTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSK-- 251 (699)
Q Consensus 177 ~~~--~~~l~i~ed~~~~v~v~gLsev~V~S-~ee~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~~~-- 251 (699)
... ...+.|+.+.++...+.|++.+.|.+ .+|+..++..+.. +.+|+ +.-.|+.+.+...+.+..+
T Consensus 146 ~~~~~~~k~eIk~~~~g~~iv~~s~~i~V~~~~edv~~~~~~~~~------~~~~~---~gi~i~k~~~~~~~~~~~~~~ 216 (298)
T 2o0a_A 146 LDYSHNDKDSIKLKFEKHSISLDSKLVIIENGLEDLPLNFSCDEH------PNLPH---SGMGIIKVQFFPRDSKSDGNN 216 (298)
T ss_dssp SCCC------CEEEECSSCEEEESCCEEESSGGGGSCTTTTCC----------------CEEEEEEEEEEESCC------
T ss_pred CCCCCCCcceEEecCCCCEEecccEEEEccccHHHHHHHhhcccc------cccCC---CCceEEEEEEecCcccccccC
Confidence 632 23567777889999999999999999 9999888732221 11222 2355666666552211111
Q ss_pred ceEEEEEEEEEcCCCcccccchhhHHHHHhhhhhHHHHHHHHHHhcCCCCCCCCCCChhhhhcccccCCCceeEEEEEeC
Q 005372 252 AALTGKLNLIDLADNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDSLGGTSHALMVACLN 331 (699)
Q Consensus 252 ~~~~skL~fVDLAGsert~~~g~rl~E~~~INkSL~aLg~VI~aL~~~~~~IPYRdSKLTrLLqdsLgGnskt~mI~~VS 331 (699)
..+.--+.|+.+.... ++..|.+ ++..+ -+-.|+++-+|+.-|- ..+-+++.++.
T Consensus 217 ~~~~~d~yf~e~~~~~-----------------~~~~l~~---~~~~~----~~~~spi~~il~~ll~-~tks~~~~~l~ 271 (298)
T 2o0a_A 217 DPVPVDFYFIELNNLK-----------------SIEQFDK---SIFKK----ESCETPIALVLKKLIS-DTKSFFLLNLN 271 (298)
T ss_dssp -CCCEEEEEEEECSHH-----------------HHHHHHH---HHHTC-----CCCSHHHHHHHHHHH-HSBCEEEEEEC
T ss_pred CCCceEEEEEEeCCHH-----------------HHHHHHh---hcccc----cccCCcHHHHHHHHHh-cCcceEEEEec
Confidence 1123357787774111 1223333 22222 2556888888876543 57888999997
Q ss_pred CCChhhhHHHHHHHHHhhhccc
Q 005372 332 PGEYQESVHTVSLAARSRHISN 353 (699)
Q Consensus 332 P~~~~ETlsTL~fA~rar~I~N 353 (699)
-+. +.-.-|.++++..++.|
T Consensus 272 ~~~--~~~~lL~~s~~i~~~~~ 291 (298)
T 2o0a_A 272 DSK--NVNKLLTISEEVQTQLC 291 (298)
T ss_dssp CGG--GHHHHHHHHHHHHHHTC
T ss_pred CCC--chhHHHHHHHHhhcccC
Confidence 541 22236888888888887
No 32
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=99.29 E-value=2.9e-12 Score=113.69 Aligned_cols=60 Identities=23% Similarity=0.261 Sum_probs=55.4
Q ss_pred ccccccCcccCHHHHhcCCCCcHHHHHHHHHHHhcCCCCCHHHHhhc-CCCHHHHHHhhccccc
Q 005372 582 QEYIDFLNTASREELVELKGIGQRLADYICELRQSSPVKSLSDLEKI-GLSTKQVYNLFGKAAK 644 (699)
Q Consensus 582 ~~~~v~iNtA~~~eL~~lpGIG~k~A~~Ii~~R~~~pf~~~~dL~~v-Gi~~~~~~~l~~~~~~ 644 (699)
...+||||||+.++|+.|||||+++|++||+++ ||++++||.+| ||+++.+++|++.+..
T Consensus 14 ~~~~vdiNtAs~~eL~~lpGIG~~~A~~IV~~G---pF~s~edL~~V~Gig~~~~e~l~~~l~~ 74 (97)
T 3arc_U 14 YGEKIDLNNTNIAAFIQYRGLYPTLAKLIVKNA---PYESVEDVLNIPGLTERQKQILRENLEH 74 (97)
T ss_dssp GGTSEETTTSCGGGGGGSTTCTTHHHHHHHHHC---CCSSGGGGGGCTTCCHHHHHHHHHTGGG
T ss_pred cCCceeCCcCCHHHHhHCCCCCHHHHHHHHHcC---CCCCHHHHHhccCCCHHHHHHHHHHhce
Confidence 356899999999999999999999999999966 99999999999 9999999999886653
No 33
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=99.23 E-value=5.5e-12 Score=116.98 Aligned_cols=60 Identities=22% Similarity=0.283 Sum_probs=52.3
Q ss_pred ccccccCcccCHHHHhcCCCCcHHHHHHHHHHHhcCCCCCHHHHhhc-CCCHHH---HHHhhccccc
Q 005372 582 QEYIDFLNTASREELVELKGIGQRLADYICELRQSSPVKSLSDLEKI-GLSTKQ---VYNLFGKAAK 644 (699)
Q Consensus 582 ~~~~v~iNtA~~~eL~~lpGIG~k~A~~Ii~~R~~~pf~~~~dL~~v-Gi~~~~---~~~l~~~~~~ 644 (699)
...+||||+|+.+||++|||||+++|++||++ .||+++|||.+| |||+++ ++++++++++
T Consensus 51 ~~~kIniNtA~~~eL~~LpGiGp~~A~~II~~---GpF~svedL~~V~GIg~k~~e~l~~~~~~~tv 114 (134)
T 1s5l_U 51 YGEKIDLNNTNIAAFIQYRGLYPTLAKLIVKN---APYESVEDVLNIPGLTERQKQILRENLEHFTV 114 (134)
T ss_dssp STTSEETTTSCGGGGGGSTTCTHHHHHHHHHT---CCCSSGGGGGGCTTCCHHHHHHHHHHHTTEEC
T ss_pred cCCeeeCcccCHHHHHHCCCCCHHHHHHHHHc---CCCCCHHHHHhCCCCCHHHHHHHHHhhcceee
Confidence 34689999999999999999999999999943 299999999999 999975 5556777775
No 34
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=99.18 E-value=2.1e-11 Score=102.87 Aligned_cols=58 Identities=38% Similarity=0.399 Sum_probs=55.2
Q ss_pred cccccCcccCHHHHhcCCCCcHHHHHHHHHHHhcCCCCCHHHHhhc-CCCHHHHHHhhcccc
Q 005372 583 EYIDFLNTASREELVELKGIGQRLADYICELRQSSPVKSLSDLEKI-GLSTKQVYNLFGKAA 643 (699)
Q Consensus 583 ~~~v~iNtA~~~eL~~lpGIG~k~A~~Ii~~R~~~pf~~~~dL~~v-Gi~~~~~~~l~~~~~ 643 (699)
..++|||+|+.++|..|||||+++|++|+++| +|.+++||.+| ||+++.+++|+..++
T Consensus 16 ~~~idiN~a~~~~L~~ipGIG~~~A~~Il~~r---~~~s~~eL~~v~Gig~k~~~~i~~~l~ 74 (75)
T 2duy_A 16 QTPVSLNEASLEELMALPGIGPVLARRIVEGR---PYARVEDLLKVKGIGPATLERLRPYLR 74 (75)
T ss_dssp GCSEETTTCCHHHHTTSTTCCHHHHHHHHHTC---CCSSGGGGGGSTTCCHHHHHHHGGGEE
T ss_pred cCccChhhCCHHHHHhCCCCCHHHHHHHHHHc---ccCCHHHHHhCCCCCHHHHHHHHHhcc
Confidence 56899999999999999999999999999999 99999999999 999999999998765
No 35
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=98.99 E-value=1.8e-10 Score=102.20 Aligned_cols=61 Identities=31% Similarity=0.542 Sum_probs=56.5
Q ss_pred ccccccCcccCHHHHhcCCCCcHHHHHHHHHHHhcC-CCCCHHHHhhc-CCCHHHHHHhhccc
Q 005372 582 QEYIDFLNTASREELVELKGIGQRLADYICELRQSS-PVKSLSDLEKI-GLSTKQVYNLFGKA 642 (699)
Q Consensus 582 ~~~~v~iNtA~~~eL~~lpGIG~k~A~~Ii~~R~~~-pf~~~~dL~~v-Gi~~~~~~~l~~~~ 642 (699)
...+++||+|+.++|..|||||+++|++|+++|+.. +|.+++||.+| ||+++.+++|...-
T Consensus 28 ~~~~i~iN~a~~~~L~~ipGIG~~~A~~Il~~r~~~g~f~s~edL~~v~Gig~k~~~~l~~~g 90 (98)
T 2edu_A 28 QKILDLLNEGSARDLRSLQRIGPKKAQLIVGWRELHGPFSQVEDLERVEGITGKQMESFLKAN 90 (98)
T ss_dssp HHHHHHHHHSCHHHHHHSTTCCHHHHHHHHHHHHHHCCCSSGGGGGGSTTCCHHHHHHHHHHH
T ss_pred hccCeehhhCCHHHHHHCCCCCHHHHHHHHHHHHhcCCcCCHHHHHhCCCCCHHHHHHHHHCc
Confidence 457899999999999999999999999999999976 99999999999 99999999997643
No 36
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=98.98 E-value=1.3e-10 Score=114.60 Aligned_cols=53 Identities=25% Similarity=0.491 Sum_probs=49.2
Q ss_pred ccCHHHHhcCCCCcHHHHHHHHHHHhcCCCCCHHHHhh-c-C-------CCHHHHHHhhccc
Q 005372 590 TASREELVELKGIGQRLADYICELRQSSPVKSLSDLEK-I-G-------LSTKQVYNLFGKA 642 (699)
Q Consensus 590 tA~~~eL~~lpGIG~k~A~~Ii~~R~~~pf~~~~dL~~-v-G-------i~~~~~~~l~~~~ 642 (699)
||+.++|++|||||+++|++||+||++.||+|++||.+ | | |+.+.+++|++.-
T Consensus 128 TA~~~eL~~LpGIG~k~A~~IIeyRe~G~F~s~eDL~~RV~GIg~~~~~Ig~r~le~lk~~~ 189 (205)
T 2i5h_A 128 TTRMHQLELLPGVGKKMMWAIIEERKKRPFESFEDIAQRVKGIQRPEKLIVSRIIYEIKNPQ 189 (205)
T ss_dssp CSSSBGGGGSTTCCHHHHHHHHHHHHHSCCCSHHHHHHHSTTCCCHHHHHHHHHHHHHHCTT
T ss_pred cCCHHHHhcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHhcCCCCcchhHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999976 9 9 8888888887654
No 37
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=98.66 E-value=2.1e-08 Score=117.72 Aligned_cols=69 Identities=25% Similarity=0.218 Sum_probs=62.6
Q ss_pred cccccccCcccCHHHHhcCCCCcHHHHHHHHHHHhcC-CCCCHHHHhhc-CCCHHHHHHhhccccccccCC
Q 005372 581 VQEYIDFLNTASREELVELKGIGQRLADYICELRQSS-PVKSLSDLEKI-GLSTKQVYNLFGKAAKGIFDR 649 (699)
Q Consensus 581 ~~~~~v~iNtA~~~eL~~lpGIG~k~A~~Ii~~R~~~-pf~~~~dL~~v-Gi~~~~~~~l~~~~~~~~~~~ 649 (699)
+....||||||+.++|+.|||||+.+|++||+||+++ ||++.+||.+| |||++.++++++.+...-..+
T Consensus 495 vn~~gVdiNtAs~~~L~~v~GiG~~~A~~Iv~yR~~~G~f~sr~~L~~V~giG~k~~ekl~~FL~i~G~~~ 565 (785)
T 3bzc_A 495 VNAVGVDVNTASAALLARISGLNSTLAQNIVAHRDANGAFRTRDELKKVSRLGEKTFEQAAGFLRVMNGDN 565 (785)
T ss_dssp HHHHCEETTTCCHHHHHTSTTCCHHHHHHHHHHHHHHCCCSSGGGGGGSTTCCHHHHHHHGGGEECTTSSC
T ss_pred hcccccccCcCCHHHHhhcCCCCHHHHHHHHHHHHhcCCCCCHHHHHhcCCCCHHHHHHhhheEEECCccc
Confidence 3456799999999999999999999999999999988 99999999999 999999999999998753333
No 38
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=98.10 E-value=1.6e-06 Score=104.44 Aligned_cols=65 Identities=20% Similarity=0.068 Sum_probs=59.2
Q ss_pred cccccccCccc-----CHHHHhcCCCCcHHHHHHHHHHH-hcC-CCCCHHHHhhc-CCCHHHHHHhhcccccc
Q 005372 581 VQEYIDFLNTA-----SREELVELKGIGQRLADYICELR-QSS-PVKSLSDLEKI-GLSTKQVYNLFGKAAKG 645 (699)
Q Consensus 581 ~~~~~v~iNtA-----~~~eL~~lpGIG~k~A~~Ii~~R-~~~-pf~~~~dL~~v-Gi~~~~~~~l~~~~~~~ 645 (699)
+...-|||||| +...|+.|+|||+++|++||+|| +.+ +|++.+||.+| |||++..++..+.+...
T Consensus 699 VN~vGVdiNtA~~~~~s~~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~~v~~iG~k~fe~~agflrI~ 771 (1030)
T 3psf_A 699 VNLVSVEVNKATDNNYYASALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLITHNILHKTIFMNSAGFLYIS 771 (1030)
T ss_dssp HHHHCEEHHHHHTCHHHHTTGGGSTTCCHHHHHHHHHHHHHTCSCCCCTTHHHHTTSSCHHHHHHHTTTEECC
T ss_pred ccccCccHHHhhcCcCCHHHHhhCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHhcCCccHHHHHhccCeEEEc
Confidence 34566999999 89999999999999999999999 556 99999999999 99999999999988764
No 39
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=98.00 E-value=3e-06 Score=103.51 Aligned_cols=65 Identities=20% Similarity=0.068 Sum_probs=59.0
Q ss_pred cccccccCccc-----CHHHHhcCCCCcHHHHHHHHHHH-hcC-CCCCHHHHhhc-CCCHHHHHHhhcccccc
Q 005372 581 VQEYIDFLNTA-----SREELVELKGIGQRLADYICELR-QSS-PVKSLSDLEKI-GLSTKQVYNLFGKAAKG 645 (699)
Q Consensus 581 ~~~~~v~iNtA-----~~~eL~~lpGIG~k~A~~Ii~~R-~~~-pf~~~~dL~~v-Gi~~~~~~~l~~~~~~~ 645 (699)
+...-|||||| +.+.|+.|+|||+++|++||+|| +.+ +|++.+||.+| |||++..++..+-+...
T Consensus 696 VN~vGVdiNtA~~~~~s~~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~~v~~iG~k~fe~~agflrI~ 768 (1219)
T 3psi_A 696 VNLVSVEVNKATDNNYYASALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLITHNILHKTIFMNSAGFLYIS 768 (1219)
T ss_dssp HHHHCEEHHHHTTCHHHHTTGGGSTTCCHHHHHHHHHHHHHHCSCCCCTTHHHHTTCSCHHHHHHHGGGEECC
T ss_pred HhccCccHHHhhcCcCCHHHHHhCCCCCHHHHHHHHHHHHHhCCCCCCHHHHhhCCCccHHHHHhccccEEEc
Confidence 34567999999 79999999999999999999999 556 99999999999 99999999999988764
No 40
>3ci0_K Pseudopilin GSPK; general secretory pathway, pseudopilus, type 4 pilin biogene methylation, protein transport; 2.20A {Escherichia coli} SCOP: a.60.16.1 a.60.16.1 d.24.1.6
Probab=97.54 E-value=2.2e-05 Score=82.80 Aligned_cols=62 Identities=11% Similarity=0.010 Sum_probs=46.6
Q ss_pred ccccCcccC---HHHHhcC--CCCcHHHHHHHHHHHhcCCCCCHHHHhh---c-CCCHHHHHHhhcccccc
Q 005372 584 YIDFLNTAS---REELVEL--KGIGQRLADYICELRQSSPVKSLSDLEK---I-GLSTKQVYNLFGKAAKG 645 (699)
Q Consensus 584 ~~v~iNtA~---~~eL~~l--pGIG~k~A~~Ii~~R~~~pf~~~~dL~~---v-Gi~~~~~~~l~~~~~~~ 645 (699)
.+||||||+ .+.|..| ||||+..|++||++|...+|.+++||.+ + |++.+...++++.+.+.
T Consensus 186 ~~iNiNTa~~~~a~vL~al~~~~i~~~~A~~ii~~R~~~gf~~v~~~~~~~~~~g~~~~~~~~~~~~l~v~ 256 (298)
T 3ci0_K 186 QQININTLDVTQSVILEALFDPWLSPVQARALLQQRPAKGWEDVDQFLAQPLLADVDERTKKQLKTVLSVD 256 (298)
T ss_dssp CCEETTTCCGGGTHHHHHHTC-------CCHHHHTCCTTCCSCHHHHHTSGGGSSSCHHHHHHHHHHEESC
T ss_pred cceeccccChhhHHHHHHhcCCCCCHHHHHHHHHhcccCCCCCHHHHHhhhcccCCChhhhhhccCeEEEe
Confidence 479999997 4568888 9999999999999998779999999987 7 99988888887766653
No 41
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=97.34 E-value=0.00014 Score=77.78 Aligned_cols=55 Identities=27% Similarity=0.448 Sum_probs=49.3
Q ss_pred cCcccCHHHHhcCCCCcHHHHHHHHHHHhcCCCCCHHHH----------hhc-CCCHHHHHHhhcc
Q 005372 587 FLNTASREELVELKGIGQRLADYICELRQSSPVKSLSDL----------EKI-GLSTKQVYNLFGK 641 (699)
Q Consensus 587 ~iNtA~~~eL~~lpGIG~k~A~~Ii~~R~~~pf~~~~dL----------~~v-Gi~~~~~~~l~~~ 641 (699)
+..-++.++|..|||||+++|+.|.++++...|..+++| .+| |||++++.+|.++
T Consensus 50 ~~~i~~~~~l~~lpGIG~~~A~kI~E~l~tG~~~~le~l~~~~p~l~ll~~v~GiG~k~a~~l~~~ 115 (335)
T 2bcq_A 50 HKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQ 115 (335)
T ss_dssp CSCCCCHHHHHTSTTCCHHHHHHHHHHHHSSSCGGGGGCCTTHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred CccccCHHHHhcCCCccHHHHHHHHHHHHcCCchHHHHHhhhhHHHHHHhcCCCcCHHHHHHHHHc
Confidence 334567888999999999999999999997799999998 699 9999999999876
No 42
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=96.91 E-value=0.00058 Score=73.09 Aligned_cols=60 Identities=18% Similarity=0.335 Sum_probs=49.3
Q ss_pred cccCHHHHhcCCCCcHHHHHHHHHHHhcCC------------CCCHHHHhhc-CCCHHHHHHhhccccccccCC
Q 005372 589 NTASREELVELKGIGQRLADYICELRQSSP------------VKSLSDLEKI-GLSTKQVYNLFGKAAKGIFDR 649 (699)
Q Consensus 589 NtA~~~eL~~lpGIG~k~A~~Ii~~R~~~p------------f~~~~dL~~v-Gi~~~~~~~l~~~~~~~~~~~ 649 (699)
.-++.++|..|||||+++|+.|.++++... +..+.+|.+| |||++++.+|.++ =..-++|
T Consensus 52 ~i~~~~~l~~LpGIG~~~A~kI~E~l~tG~~~~le~l~~~~~~~~l~~l~~V~GiGpk~a~~l~~~-Gi~tled 124 (335)
T 2fmp_A 52 KIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDE-GIKTLED 124 (335)
T ss_dssp CCCCHHHHHTSTTCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHTTSTTCCHHHHHHHHHT-TCCSHHH
T ss_pred cccCHHHHhcCCCCcHHHHHHHHHHHHhCCcHHHHHHHcccchhHHHHHhCCCCCCHHHHHHHHHc-CCCCHHH
Confidence 356788999999999999999999988654 5678889999 9999999999887 3333433
No 43
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=96.63 E-value=0.0012 Score=71.31 Aligned_cols=53 Identities=19% Similarity=0.292 Sum_probs=46.4
Q ss_pred cccCHHHHhcCCCCcHHHHHHHHHHHhcCCCCCHHHH------------hhc-CCCHHHHHHhhcc
Q 005372 589 NTASREELVELKGIGQRLADYICELRQSSPVKSLSDL------------EKI-GLSTKQVYNLFGK 641 (699)
Q Consensus 589 NtA~~~eL~~lpGIG~k~A~~Ii~~R~~~pf~~~~dL------------~~v-Gi~~~~~~~l~~~ 641 (699)
.-++.++|..|||||+++|+.|.++++...|..+++| .+| |||++++.+|.++
T Consensus 56 ~i~~~~~l~~lpGIG~~~A~kI~E~l~tG~~~~le~L~~d~~~~~l~~l~~I~GvG~kta~~l~~~ 121 (360)
T 2ihm_A 56 PVASLSQLHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERYQTMKLFTQVFGVGVKTANRWYQE 121 (360)
T ss_dssp CCCSGGGGTTCTTCCHHHHHHHHHHHHHSCCHHHHHHHHSHHHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred ccCCHHHHhcCCCCCHHHHHHHHHHHHcCChHHHHHHhcccchHHHHHHhCCCCCCHHHHHHHHHc
Confidence 4556678999999999999999999998888888866 468 9999999999877
No 44
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=96.57 E-value=0.00054 Score=59.42 Aligned_cols=62 Identities=18% Similarity=0.140 Sum_probs=50.0
Q ss_pred ccccccCcccCHHHHhcCCCCcHHHHHHHHHHHhcC---CCCCHHHHhhc-CCCHHHHHHhhcccc
Q 005372 582 QEYIDFLNTASREELVELKGIGQRLADYICELRQSS---PVKSLSDLEKI-GLSTKQVYNLFGKAA 643 (699)
Q Consensus 582 ~~~~v~iNtA~~~eL~~lpGIG~k~A~~Ii~~R~~~---pf~~~~dL~~v-Gi~~~~~~~l~~~~~ 643 (699)
.....+.|......|..|||||++.|++|+++-..- --.+.++|.++ |||++..++|...+.
T Consensus 20 ~~~~~~~~~~~~~~L~~IpgIG~~~A~~Ll~~fgs~~~l~~as~~eL~~i~GIG~~~a~~I~~~l~ 85 (91)
T 2a1j_B 20 EKLEQDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLH 85 (91)
T ss_dssp HHHHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHSSHHHHHSCCHHHHHTSSSCCSHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHcCCCCCHHHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHh
Confidence 345667788888999999999999999999875211 34578899999 999999999987654
No 45
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=96.52 E-value=0.0004 Score=71.07 Aligned_cols=51 Identities=18% Similarity=0.348 Sum_probs=0.0
Q ss_pred cccCHHHHhcCCCCcHHHHHHHHHHHhcCCCCCHHHHh--------hc-CCCHHHHHHhhcccc
Q 005372 589 NTASREELVELKGIGQRLADYICELRQSSPVKSLSDLE--------KI-GLSTKQVYNLFGKAA 643 (699)
Q Consensus 589 NtA~~~eL~~lpGIG~k~A~~Ii~~R~~~pf~~~~dL~--------~v-Gi~~~~~~~l~~~~~ 643 (699)
+||+..+|..|||||+++|.+|+++ +|.++++|. +| |||++..++|...+-
T Consensus 10 ~~a~~~~L~~IpGIGpk~a~~Ll~~----gf~sve~L~~a~~~eL~~v~GIG~ktAe~I~~~l~ 69 (241)
T 1vq8_Y 10 AEEEYTELTDISGVGPSKAESLREA----GFESVEDVRGADQSALADVSGIGNALAARIKADVG 69 (241)
T ss_dssp ----------------------------------------------------------------
T ss_pred cccchhHHhcCCCCCHHHHHHHHHc----CCCCHHHHHhCCHHHHHhccCCCHHHHHHHHHHHH
Confidence 4888899999999999999999986 688887776 88 999999999987663
No 46
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=96.52 E-value=0.00077 Score=58.11 Aligned_cols=63 Identities=17% Similarity=0.136 Sum_probs=49.5
Q ss_pred cccCcccCHHHHhcCCCCcHHHHHHHHHHHhcC---CCCCHHHHhhc-CCCHHHHHHhhcccccccc
Q 005372 585 IDFLNTASREELVELKGIGQRLADYICELRQSS---PVKSLSDLEKI-GLSTKQVYNLFGKAAKGIF 647 (699)
Q Consensus 585 ~v~iNtA~~~eL~~lpGIG~k~A~~Ii~~R~~~---pf~~~~dL~~v-Gi~~~~~~~l~~~~~~~~~ 647 (699)
..+.|.+....|..+||||++.|++|+++-..- --.+.++|.++ |||++..+.|...+.....
T Consensus 10 ~~~~~~~~~~~L~~IpgIG~~~A~~Ll~~fgsl~~l~~a~~~eL~~i~GIG~~~a~~I~~~l~~~~~ 76 (89)
T 1z00_A 10 EQDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPFL 76 (89)
T ss_dssp HHHHHHHHHHHHTTSSSCCHHHHHHHHHHTCBHHHHHHCCHHHHHTSTTCCHHHHHHHHHHHHSCSS
T ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHHHhc
Confidence 456788889999999999999999999863211 22467889999 9999999999877654433
No 47
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=96.18 E-value=0.00087 Score=56.40 Aligned_cols=57 Identities=14% Similarity=0.248 Sum_probs=39.4
Q ss_pred cccCcccCHHHHhcCCCCcHHHHHHHHHHHhcC---CCCCHHHHhhc-CCCHHHHHHhhcc
Q 005372 585 IDFLNTASREELVELKGIGQRLADYICELRQSS---PVKSLSDLEKI-GLSTKQVYNLFGK 641 (699)
Q Consensus 585 ~v~iNtA~~~eL~~lpGIG~k~A~~Ii~~R~~~---pf~~~~dL~~v-Gi~~~~~~~l~~~ 641 (699)
.++.|.+....|..|||||++.|++|+++-..- --.+.++|.++ |||++..+.|...
T Consensus 15 ~~~~~~~~~~~L~~I~gIG~~~A~~Ll~~fgsl~~l~~a~~eeL~~i~GIG~~~a~~I~~~ 75 (78)
T 1kft_A 15 VPRGSHMNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWS 75 (78)
T ss_dssp --------CCGGGGCTTCSSSHHHHHHHHHSCHHHHHHCCHHHHTTSSSTTSHHHHHHHHH
T ss_pred HHhHHHHHHHHHhcCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHH
Confidence 466777788889999999999999999874210 12367889999 9999999888754
No 48
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=96.09 E-value=0.0023 Score=63.19 Aligned_cols=49 Identities=14% Similarity=0.139 Sum_probs=40.6
Q ss_pred HHHhcCCCCcHHHHHHHHHHHhcC------CCCCHHHHhhc-CCCHHHHHHhhccc
Q 005372 594 EELVELKGIGQRLADYICELRQSS------PVKSLSDLEKI-GLSTKQVYNLFGKA 642 (699)
Q Consensus 594 ~eL~~lpGIG~k~A~~Ii~~R~~~------pf~~~~dL~~v-Gi~~~~~~~l~~~~ 642 (699)
..|..+||||||+|.+|+.+.... --.+.++|.+| |||+|..++|...+
T Consensus 72 ~~L~~v~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~~l 127 (191)
T 1ixr_A 72 ELLLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALEL 127 (191)
T ss_dssp HHHHSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHhcCCCcCHHHHHHHHHhCChHHHHHHHHhCCHHHHHhCCCCCHHHHHHHHHHH
Confidence 468899999999999999987542 23688999999 99999998886444
No 49
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=96.09 E-value=0.0042 Score=51.11 Aligned_cols=53 Identities=19% Similarity=0.139 Sum_probs=41.1
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHhcC---CCCCHHHHhhc-CCCHHHHHHhhcccccc
Q 005372 593 REELVELKGIGQRLADYICELRQSS---PVKSLSDLEKI-GLSTKQVYNLFGKAAKG 645 (699)
Q Consensus 593 ~~eL~~lpGIG~k~A~~Ii~~R~~~---pf~~~~dL~~v-Gi~~~~~~~l~~~~~~~ 645 (699)
...|..+||||+++|++|+++-..- --.+.++|.+| |||++....|...+-..
T Consensus 13 ~~~L~~i~giG~~~a~~Ll~~fgs~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~~~ 69 (75)
T 1x2i_A 13 RLIVEGLPHVSATLARRLLKHFGSVERVFTASVAELMKVEGIGEKIAKEIRRVITAP 69 (75)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHHSC
T ss_pred HHHHcCCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHhcCCCCCHHHHHHHHHHHhCc
Confidence 4578899999999999999964211 12467888999 99999999998765443
No 50
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=95.87 E-value=0.0047 Score=67.20 Aligned_cols=53 Identities=11% Similarity=0.188 Sum_probs=45.4
Q ss_pred cccCHHHHhcCCCCcHHHHHHHHHHHhcCCCCCHHHHh------------hc-CCCHHHHHHhhcc
Q 005372 589 NTASREELVELKGIGQRLADYICELRQSSPVKSLSDLE------------KI-GLSTKQVYNLFGK 641 (699)
Q Consensus 589 NtA~~~eL~~lpGIG~k~A~~Ii~~R~~~pf~~~~dL~------------~v-Gi~~~~~~~l~~~ 641 (699)
.-++.++|..|||||+++|+.|.++.+...+..+++|. +| |||++++.+|-++
T Consensus 75 ~i~~~~~l~~lpGIG~~ia~kI~E~l~tG~~~~le~l~~d~~~~~l~~l~~I~GvGpk~a~~ly~~ 140 (381)
T 1jms_A 75 PITSMKDTEGIPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRM 140 (381)
T ss_dssp CCCSGGGGTTCSSCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred cccCHHHHhcCCCCcHHHHHHHHHHHHcCCcHHHHHHhcCcchhHHHHHHccCCCCHHHHHHHHHc
Confidence 34556679999999999999999999988887777664 68 9999999999776
No 51
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=95.79 E-value=0.0038 Score=62.64 Aligned_cols=51 Identities=16% Similarity=0.307 Sum_probs=40.5
Q ss_pred HHHhcCCCCcHHHHHHHHHHHhcCC------CCCHHHHhhc-CCCHHHHHHhhccccc
Q 005372 594 EELVELKGIGQRLADYICELRQSSP------VKSLSDLEKI-GLSTKQVYNLFGKAAK 644 (699)
Q Consensus 594 ~eL~~lpGIG~k~A~~Ii~~R~~~p------f~~~~dL~~v-Gi~~~~~~~l~~~~~~ 644 (699)
..|..++|||||+|.+|+......- -.+.+.|.+| |||+|+.++|...+..
T Consensus 88 ~~L~sv~GIGpk~A~~Ils~~~~~~l~~aI~~~d~~~L~~vpGIG~KtA~rIi~elk~ 145 (212)
T 2ztd_A 88 LTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRD 145 (212)
T ss_dssp HHHHTSTTCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHTT
T ss_pred HHhcCcCCcCHHHHHHHHHhCCHHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 4578899999999999999865432 4588899999 9999998877644443
No 52
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=95.49 E-value=0.0087 Score=59.64 Aligned_cols=47 Identities=26% Similarity=0.364 Sum_probs=38.8
Q ss_pred HHHhcCCCCcHHHHHHHHHHHhcC------CCCCHHHHhhc-CCCHHHHHHhhc
Q 005372 594 EELVELKGIGQRLADYICELRQSS------PVKSLSDLEKI-GLSTKQVYNLFG 640 (699)
Q Consensus 594 ~eL~~lpGIG~k~A~~Ii~~R~~~------pf~~~~dL~~v-Gi~~~~~~~l~~ 640 (699)
..|..+||||||+|.+|+.+.... --.+.++|.+| |||+|..++|..
T Consensus 73 ~~L~~V~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~ 126 (203)
T 1cuk_A 73 KELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIV 126 (203)
T ss_dssp HHHHHSSSCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHH
T ss_pred HHHhcCCCcCHHHHHHHHhhCChHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHH
Confidence 358899999999999999987541 23688999999 999999888743
No 53
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=95.23 E-value=0.0066 Score=49.24 Aligned_cols=46 Identities=17% Similarity=0.342 Sum_probs=32.3
Q ss_pred CHHHHhcCCCCcHHHHHHHHHHHhcCCCCCH--------HHHhhcCCCHHH-HHHhhcccc
Q 005372 592 SREELVELKGIGQRLADYICELRQSSPVKSL--------SDLEKIGLSTKQ-VYNLFGKAA 643 (699)
Q Consensus 592 ~~~eL~~lpGIG~k~A~~Ii~~R~~~pf~~~--------~dL~~vGi~~~~-~~~l~~~~~ 643 (699)
..+.|..|||||++++++++++ |.|+ +||.+| ||.+. .++|.+.+.
T Consensus 2 ~~s~L~~IpGIG~kr~~~LL~~-----Fgs~~~i~~As~eeL~~v-ig~~~~A~~I~~~l~ 56 (63)
T 2a1j_A 2 PQDFLLKMPGVNAKNCRSLMHH-----VKNIAELAALSQDELTSI-LGNAANAKQLYDFIH 56 (63)
T ss_dssp CCHHHHTSTTCCHHHHHHHHHH-----CSSHHHHHTCCHHHHHHH-HSCHHHHHHHHHHHH
T ss_pred HHhHHHcCCCCCHHHHHHHHHH-----cCCHHHHHHCCHHHHHHH-cCchHHHHHHHHHHh
Confidence 3468999999999999999984 6554 555555 44455 566655443
No 54
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=94.97 E-value=0.018 Score=65.92 Aligned_cols=47 Identities=17% Similarity=0.364 Sum_probs=41.3
Q ss_pred ccCHHHHhcCCCCcHHHHHHHHHHHhcCCCCCHHHHhh---------c-CCCHHHHHHhhc
Q 005372 590 TASREELVELKGIGQRLADYICELRQSSPVKSLSDLEK---------I-GLSTKQVYNLFG 640 (699)
Q Consensus 590 tA~~~eL~~lpGIG~k~A~~Ii~~R~~~pf~~~~dL~~---------v-Gi~~~~~~~l~~ 640 (699)
.+...+|..|||||+|+|.+|++. +|.+++||.+ + |||+|+.++|..
T Consensus 93 ~~~~~~L~~v~GVGpk~A~~i~~~----G~~s~edL~~a~~~~~L~~~~GiG~Ktaq~I~~ 149 (578)
T 2w9m_A 93 PPGLLDLLGVRGLGPKKIRSLWLA----GIDSLERLREAAESGELAGLKGFGAKSAATILE 149 (578)
T ss_dssp CHHHHHHTTSTTCCHHHHHHHHHT----TCCSHHHHHHHHHHTTTTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHc----CCCCHHHHHHHHhhCccccCCCCCHHHHHHHHH
Confidence 456788999999999999999973 8999999987 8 999999999843
No 55
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=94.49 E-value=0.016 Score=49.73 Aligned_cols=36 Identities=17% Similarity=0.351 Sum_probs=30.1
Q ss_pred cCcccCHHHHhcCCCCcHHHHHHHHHHHhcCCCCCHHHHhh
Q 005372 587 FLNTASREELVELKGIGQRLADYICELRQSSPVKSLSDLEK 627 (699)
Q Consensus 587 ~iNtA~~~eL~~lpGIG~k~A~~Ii~~R~~~pf~~~~dL~~ 627 (699)
..|.+....|..|||||++.+++++. -|.|+++|.+
T Consensus 11 ~~N~~~~s~L~~IpGIG~kr~~~LL~-----~FgSl~~i~~ 46 (84)
T 1z00_B 11 KYNPGPQDFLLKMPGVNAKNCRSLMH-----HVKNIAELAA 46 (84)
T ss_dssp TSCHHHHHHHHTCSSCCHHHHHHHHH-----HSSCHHHHHH
T ss_pred cccccHHHHHHhCCCCCHHHHHHHHH-----HcCCHHHHHH
Confidence 57999999999999999999999997 3766655543
No 56
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=94.11 E-value=0.05 Score=65.90 Aligned_cols=60 Identities=22% Similarity=0.211 Sum_probs=49.7
Q ss_pred ccccCcccCHHH-----------HhcCCCCcHHHHHHHHHHHhcCCCCCHHHHhhc-CCCHHHHHHhhcccc
Q 005372 584 YIDFLNTASREE-----------LVELKGIGQRLADYICELRQSSPVKSLSDLEKI-GLSTKQVYNLFGKAA 643 (699)
Q Consensus 584 ~~v~iNtA~~~e-----------L~~lpGIG~k~A~~Ii~~R~~~pf~~~~dL~~v-Gi~~~~~~~l~~~~~ 643 (699)
.+++||.-.... |..|+|||+..|++||+.|++.||+|++||.+- +++.+.++.|...-+
T Consensus 946 lppDIn~S~~~~f~v~~~~Ir~gL~aIkGlG~~~a~~Iv~aR~~gpF~s~~Df~~R~~v~k~~lE~Li~aGA 1017 (1041)
T 3f2b_A 946 KNIDLYRSQATEFVIDGNSLIPPFNAIPGLGTNVAQAIVRAREEGEFLSKEDLQQRGKLSKTLLEYLESRGC 1017 (1041)
T ss_dssp CCCCTTTCCSSCCEEETTEEECCGGGSTTCCHHHHHHHHHHHHTSCCCSHHHHHHHHTCCHHHHHHHHHTTT
T ss_pred CcceEEecCCcceEEECCEEEEchHhhCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHCCC
Confidence 468888655221 678999999999999999997799999999875 999999999875433
No 57
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=93.39 E-value=0.079 Score=52.76 Aligned_cols=50 Identities=26% Similarity=0.258 Sum_probs=40.9
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHhcC---CCCCHHHHhhc-CCCHHHHHHhhccc
Q 005372 593 REELVELKGIGQRLADYICELRQSS---PVKSLSDLEKI-GLSTKQVYNLFGKA 642 (699)
Q Consensus 593 ~~eL~~lpGIG~k~A~~Ii~~R~~~---pf~~~~dL~~v-Gi~~~~~~~l~~~~ 642 (699)
...|..|||||++.|.+|+++-..- --.+.++|.++ |||++..++|...+
T Consensus 161 ~~~L~~i~gVg~~~a~~Ll~~fgs~~~l~~a~~e~L~~v~GiG~~~a~~i~~~~ 214 (219)
T 2bgw_A 161 LYILQSFPGIGRRTAERILERFGSLERFFTASKAEISKVEGIGEKRAEEIKKIL 214 (219)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHSSHHHHTTCCHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHhhCCCCCHHHHHHHHHHH
Confidence 4468899999999999999986432 23678899999 99999999987654
No 58
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=92.00 E-value=0.028 Score=56.79 Aligned_cols=51 Identities=12% Similarity=0.272 Sum_probs=0.0
Q ss_pred cCHHHHhcCCCCcHHHHHHHHHHHhcC-CC--CCHHHHhhcCCCHHHHHHhhcc
Q 005372 591 ASREELVELKGIGQRLADYICELRQSS-PV--KSLSDLEKIGLSTKQVYNLFGK 641 (699)
Q Consensus 591 A~~~eL~~lpGIG~k~A~~Ii~~R~~~-pf--~~~~dL~~vGi~~~~~~~l~~~ 641 (699)
.....|..|||||+++|++++++-..- .+ .+++||.+||||++..+.|.+.
T Consensus 170 ~~~s~L~~IpGIG~k~ak~Ll~~FGSl~~i~~As~eeL~~VGIG~~~A~~I~~~ 223 (226)
T 3c65_A 170 MFHSVLDDIPGVGEKRKKALLNYFGSVKKMKEATVEELQRANIPRAVAEKIYEK 223 (226)
T ss_dssp ------------------------------------------------------
T ss_pred cccccccccCCCCHHHHHHHHHHhCCHHHHHhCCHHHHHHcCCCHHHHHHHHHH
Confidence 345679999999999999999985432 23 3678888889999888887654
No 59
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Probab=90.83 E-value=0.22 Score=59.88 Aligned_cols=64 Identities=25% Similarity=0.326 Sum_probs=50.1
Q ss_pred cccccCcccCH----H-------HHhcCCCCcHHHHHHHHHHHhcCC-CCCHHHHhh-cC---CCHHHHHHhhccccccc
Q 005372 583 EYIDFLNTASR----E-------ELVELKGIGQRLADYICELRQSSP-VKSLSDLEK-IG---LSTKQVYNLFGKAAKGI 646 (699)
Q Consensus 583 ~~~v~iNtA~~----~-------eL~~lpGIG~k~A~~Ii~~R~~~p-f~~~~dL~~-vG---i~~~~~~~l~~~~~~~~ 646 (699)
..+.+||.-.. + =|..|+|||+..|++||+.|+..| |+|++||.+ ++ ++.+.++.|.. .|.
T Consensus 811 vlppdin~S~~~f~~~~~~~Ir~gl~~Ikgvg~~~~~~Iv~~R~~g~~f~s~~Df~~R~~~~~~~~~~le~Li~---aGa 887 (910)
T 2hnh_A 811 ILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM---SGA 887 (910)
T ss_dssp EECCCTTTCBSSCEECTTSCEECBGGGSTTCCHHHHHHHHHHHHTTCCCSSHHHHTTSSCSSSSCHHHHHHHHH---TTT
T ss_pred ECCcceeecCCCeEEecCCeeehhHHhcCCCCHHHHHHHHHHHhcCCCCCCHHHHHHhccccCCCHHHHHHHHH---CCC
Confidence 45678884332 2 478899999999999999999558 999999976 54 89999998875 455
Q ss_pred cCC
Q 005372 647 FDR 649 (699)
Q Consensus 647 ~~~ 649 (699)
|+.
T Consensus 888 fd~ 890 (910)
T 2hnh_A 888 FDR 890 (910)
T ss_dssp TTT
T ss_pred Ccc
Confidence 643
No 60
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=90.65 E-value=0.057 Score=51.08 Aligned_cols=50 Identities=16% Similarity=0.238 Sum_probs=33.4
Q ss_pred eeeceeeCCCCCcHhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCcceec
Q 005372 82 YQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQ 133 (699)
Q Consensus 82 F~FD~VF~~~~~sQ~~Vf~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTm~ 133 (699)
++||.+.... ..|.+++. .+..+++++-......++-||++|+|||+.+.
T Consensus 7 ~~f~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 7 ANLDTYHPKN-VSQNRALL-TIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp CCSSSCCCCS-HHHHHHHH-HHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred CccccccCCC-HHHHHHHH-HHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 6788876543 35566664 45566665543334567789999999999763
No 61
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=90.44 E-value=0.22 Score=56.78 Aligned_cols=45 Identities=24% Similarity=0.423 Sum_probs=34.3
Q ss_pred CHHHHhcCCCCcHHHHHHHHHHHhcCCCCCHHHHh---------hc-CCCHHHHHHhh
Q 005372 592 SREELVELKGIGQRLADYICELRQSSPVKSLSDLE---------KI-GLSTKQVYNLF 639 (699)
Q Consensus 592 ~~~eL~~lpGIG~k~A~~Ii~~R~~~pf~~~~dL~---------~v-Gi~~~~~~~l~ 639 (699)
...+|..++|||+|+|.+|+... .+.+++||. ++ |||+|+.++|.
T Consensus 91 ~~~~l~~v~GvGpk~A~~~~~~l---g~~~~~~l~~a~~~~~l~~~~GiG~k~a~~i~ 145 (575)
T 3b0x_A 91 GVLEVMEVPGVGPKTARLLYEGL---GIDSLEKLKAALDRGDLTRLKGFGPKRAERIR 145 (575)
T ss_dssp HHHHHHTSTTTCHHHHHHHHHTS---CCCSHHHHHHHHHHTGGGGSTTCCHHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHHhc---CCCCHHHHHHHHHcCCcccCCCCCccHHHHHH
Confidence 35778889999999999998864 566776653 46 88888887764
No 62
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=89.26 E-value=0.2 Score=42.74 Aligned_cols=39 Identities=26% Similarity=0.356 Sum_probs=31.3
Q ss_pred ccCcccCHHHHhcCCCCcHHHHHHHHHHHhcCCCCCHHHH
Q 005372 586 DFLNTASREELVELKGIGQRLADYICELRQSSPVKSLSDL 625 (699)
Q Consensus 586 v~iNtA~~~eL~~lpGIG~k~A~~Ii~~R~~~pf~~~~dL 625 (699)
-.|-.|+.++|..+||||+++|+.|+++-+. ||...+++
T Consensus 43 ~~l~~a~~~eL~~i~GIG~~~a~~I~~~l~~-~~~~~~~~ 81 (89)
T 1z00_A 43 EQLIAASREDLALCPGLGPQKARRLFDVLHE-PFLKVPGG 81 (89)
T ss_dssp HHHHHCCHHHHHTSTTCCHHHHHHHHHHHHS-CSSSCSSS
T ss_pred HHHHhCCHHHHHhCCCCCHHHHHHHHHHHHH-HhccchhH
Confidence 3455789999999999999999999998753 77655544
No 63
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=89.00 E-value=0.28 Score=60.35 Aligned_cols=63 Identities=27% Similarity=0.365 Sum_probs=49.4
Q ss_pred cccccCcccCHH----------HHhcCCCCcHHHHHHHHHHHhcC-CCCCHHHHhh-cC---CCHHHHHHhhcccccccc
Q 005372 583 EYIDFLNTASRE----------ELVELKGIGQRLADYICELRQSS-PVKSLSDLEK-IG---LSTKQVYNLFGKAAKGIF 647 (699)
Q Consensus 583 ~~~v~iNtA~~~----------eL~~lpGIG~k~A~~Ii~~R~~~-pf~~~~dL~~-vG---i~~~~~~~l~~~~~~~~~ 647 (699)
..+.+||.-..+ =|..|+|||+..|++||+.|++. ||+|++||.+ ++ ++.+.++.|.. .|.|
T Consensus 868 vlppdIN~S~~~f~v~~~~Ir~GL~aIkgvg~~~~~~Iv~~R~~~g~f~sl~Df~~Rv~~~~~nk~~le~Li~---aGAf 944 (1220)
T 2hpi_A 868 VLPPDVNRSGFDFKVVGEEILFGLSAVKNVGEMAARAILEERERGGPFKSLGDFLKRLPEQVVNKRALESLVK---AGAL 944 (1220)
T ss_dssp EECCCTTTCCSSCEEETTEEECCSTTSSSCCHHHHHHHHHHHHHSCSCCSHHHHHHHSCTTTSCHHHHHHHHH---HTTT
T ss_pred eCCCceeecCCccEEeCCeeeehhhhcCCCCHHHHHHHHHHHHhcCCCCCHHHHHHhccccCCCHHHHHHHHh---cCcc
Confidence 456788854432 25779999999999999999975 9999999966 54 89999988874 4556
Q ss_pred C
Q 005372 648 D 648 (699)
Q Consensus 648 ~ 648 (699)
+
T Consensus 945 D 945 (1220)
T 2hpi_A 945 D 945 (1220)
T ss_dssp G
T ss_pred c
Confidence 4
No 64
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=88.10 E-value=0.23 Score=48.90 Aligned_cols=28 Identities=29% Similarity=0.313 Sum_probs=24.9
Q ss_pred cCcccCHHHHhcCCCCcHHHHHHHHHHH
Q 005372 587 FLNTASREELVELKGIGQRLADYICELR 614 (699)
Q Consensus 587 ~iNtA~~~eL~~lpGIG~k~A~~Ii~~R 614 (699)
.|-.++.++|..+||||+|+|++|+.+=
T Consensus 100 aI~~~d~~~L~~vpGIG~K~A~rI~~~l 127 (191)
T 1ixr_A 100 ALLEGDARLLTSASGVGRRLAERIALEL 127 (191)
T ss_dssp HHHTTCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHhCCHHHHHhCCCCCHHHHHHHHHHH
Confidence 4778999999999999999999998543
No 65
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=87.75 E-value=0.42 Score=38.87 Aligned_cols=31 Identities=32% Similarity=0.474 Sum_probs=26.8
Q ss_pred ccCcccCHHHHhcCCCCcHHHHHHHHHHHhc
Q 005372 586 DFLNTASREELVELKGIGQRLADYICELRQS 616 (699)
Q Consensus 586 v~iNtA~~~eL~~lpGIG~k~A~~Ii~~R~~ 616 (699)
-.|-.|+.++|..+||||+++|+.|+++.+.
T Consensus 38 ~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~~ 68 (75)
T 1x2i_A 38 ERVFTASVAELMKVEGIGEKIAKEIRRVITA 68 (75)
T ss_dssp HHHHHCCHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred HHHHhCCHHHHhcCCCCCHHHHHHHHHHHhC
Confidence 3456789999999999999999999998753
No 66
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=87.75 E-value=0.15 Score=49.00 Aligned_cols=50 Identities=18% Similarity=0.243 Sum_probs=31.5
Q ss_pred eeeeceeeCCCCCcHhHHHHhhccchhhhhcCCCC-EEEEeeccCCCCCccee
Q 005372 81 CYQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRN-ATVFAYGATGSGKTYTM 132 (699)
Q Consensus 81 ~F~FD~VF~~~~~sQ~~Vf~~~v~plV~~vl~G~N-~tIfAYGqTGSGKTyTm 132 (699)
.++||.+.... ..+..++. .+..++...-.+.. ..|+-||++|+||||.+
T Consensus 21 ~~~f~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 21 RASLSDVDLND-DGRIKAIR-FAERFVAEYEPGKKMKGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CCCTTSSCCSS-HHHHHHHH-HHHHHHHHCCSSCCCCEEEEECSTTSSHHHHH
T ss_pred cCCHhhccCCC-hhHHHHHH-HHHHHHHHhhhccCCCeEEEECCCCCCHHHHH
Confidence 36788766543 24455655 34445544433322 67888999999999875
No 67
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=87.67 E-value=0.25 Score=49.04 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=24.5
Q ss_pred cCcccCHHHHhcCCCCcHHHHHHHHHH
Q 005372 587 FLNTASREELVELKGIGQRLADYICEL 613 (699)
Q Consensus 587 ~iNtA~~~eL~~lpGIG~k~A~~Ii~~ 613 (699)
.|-.++.++|..+||||+|+|++|+.+
T Consensus 101 aI~~~d~~~L~~vpGIG~K~A~rI~~e 127 (203)
T 1cuk_A 101 AVEREEVGALVKLPGIGKKTAERLIVE 127 (203)
T ss_dssp HHHTTCHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHhCCHHHHhhCCCCCHHHHHHHHHH
Confidence 577899999999999999999999853
No 68
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=87.20 E-value=0.47 Score=39.17 Aligned_cols=50 Identities=30% Similarity=0.432 Sum_probs=36.8
Q ss_pred HHHhcCCCCcHHHHHHHHHHHhcCCCCCHHH--------Hhhc-CCCHHHHHHhhccccc-ccc
Q 005372 594 EELVELKGIGQRLADYICELRQSSPVKSLSD--------LEKI-GLSTKQVYNLFGKAAK-GIF 647 (699)
Q Consensus 594 ~eL~~lpGIG~k~A~~Ii~~R~~~pf~~~~d--------L~~v-Gi~~~~~~~l~~~~~~-~~~ 647 (699)
++|..|||||+.++.+.-+. +|.+++| |..+ ||+....++|....-. +-|
T Consensus 7 ~~l~~L~Gi~~~~~~kL~e~----Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr~~~w~ 66 (70)
T 1wcn_A 7 DDLLNLEGVDRDLAFKLAAR----GVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARNICWF 66 (70)
T ss_dssp HHHHSSTTCCHHHHHHHHTT----TCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHHHHTT
T ss_pred hHHHHcCCCCHHHHHHHHHc----CCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHHccCc
Confidence 57899999999999876543 6766655 4556 8888888888765554 555
No 69
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=86.22 E-value=0.36 Score=40.12 Aligned_cols=28 Identities=39% Similarity=0.384 Sum_probs=24.6
Q ss_pred ccCcccCHHHHhcCCCCcHHHHHHHHHH
Q 005372 586 DFLNTASREELVELKGIGQRLADYICEL 613 (699)
Q Consensus 586 v~iNtA~~~eL~~lpGIG~k~A~~Ii~~ 613 (699)
..|-.|+.++|..+||||+++|+.|+++
T Consensus 48 ~~l~~a~~eeL~~i~GIG~~~a~~I~~~ 75 (78)
T 1kft_A 48 QGLRNASVEEIAKVPGISQGLAEKIFWS 75 (78)
T ss_dssp HHHHHCCHHHHTTSSSTTSHHHHHHHHH
T ss_pred HHHHHCCHHHHHHCCCCCHHHHHHHHHH
Confidence 3456789999999999999999999875
No 70
>3ci0_K Pseudopilin GSPK; general secretory pathway, pseudopilus, type 4 pilin biogene methylation, protein transport; 2.20A {Escherichia coli} SCOP: a.60.16.1 a.60.16.1 d.24.1.6
Probab=85.13 E-value=0.99 Score=47.15 Aligned_cols=62 Identities=15% Similarity=0.201 Sum_probs=48.4
Q ss_pred cccccCcccC-------------HHHHhcCCCCc----HHHHHHHHHHHh-------------------------cC-CC
Q 005372 583 EYIDFLNTAS-------------REELVELKGIG----QRLADYICELRQ-------------------------SS-PV 619 (699)
Q Consensus 583 ~~~v~iNtA~-------------~~eL~~lpGIG----~k~A~~Ii~~R~-------------------------~~-pf 619 (699)
...+|||.+. ..-|...-|+. +.+|++|++++. +. ||
T Consensus 75 ~~~fNLN~L~~~~~~~~~~~~~~~~~Ll~~lg~~~~~a~~la~~i~dw~D~d~~~~~~~GaE~~~Y~~~~~~y~~~n~~~ 154 (298)
T 3ci0_K 75 QACFNLNALAQPTTASRPLAVQQLIALISRLDVPAYRAELIAESLWEFIDEDRSVQTRLGREDSEYLARSVPFYAANQPL 154 (298)
T ss_dssp TSSEEGGGGGSCCCSSSCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHSSSSSCCSSSCCCHHHHHTSSSCBCCCCSCC
T ss_pred CCceehhhcccccCCcChHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCCccCCCCccccchhhcCCCCCCCCCCC
Confidence 3567777551 34455556888 568888888883 23 79
Q ss_pred CCHHHHhhc-CCCHHHHHHhhccccc
Q 005372 620 KSLSDLEKI-GLSTKQVYNLFGKAAK 644 (699)
Q Consensus 620 ~~~~dL~~v-Gi~~~~~~~l~~~~~~ 644 (699)
.+++||..| |++++.+++|+..++.
T Consensus 155 ~~~~EL~~v~G~~~~~~~~l~p~vtv 180 (298)
T 3ci0_K 155 ADISEMRVVQGMDAGLYQKLKPLVCA 180 (298)
T ss_dssp SSGGGGGGSTTCCHHHHHHHTTTEEC
T ss_pred CCHHHHHhccCCCHHHHHhhcCeEEE
Confidence 999999999 9999999999999997
No 71
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=85.02 E-value=0.73 Score=49.80 Aligned_cols=51 Identities=16% Similarity=0.212 Sum_probs=39.7
Q ss_pred CHHHHhcCCCCcHHHHHHHHHHHhcC---CCCCHHHHhhc-CCCHHHHHHhhccc
Q 005372 592 SREELVELKGIGQRLADYICELRQSS---PVKSLSDLEKI-GLSTKQVYNLFGKA 642 (699)
Q Consensus 592 ~~~eL~~lpGIG~k~A~~Ii~~R~~~---pf~~~~dL~~v-Gi~~~~~~~l~~~~ 642 (699)
.+.-|..||+||++.|+++|++=..- ==.+.+||.+| |||++..+.|++-+
T Consensus 313 GyRiLs~IPrl~~~iae~Lv~~FGsLq~Il~AS~eEL~~VeGIGe~rAr~IregL 367 (377)
T 3c1y_A 313 GYRLLKTVARIPLSIGYNVVRMFKTLDQISKASVEDLKKVEGIGEKRARAISESI 367 (377)
T ss_dssp SHHHHHHTSCCCHHHHHHHHHHHCSHHHHTTCCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHhhCCCCCHHHHHHHHHHhCCHHHHHhCCHHHHHhccCccHHHHHHHHHHH
Confidence 34588999999999999999963211 22567889999 99999999888654
No 72
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=84.94 E-value=0.25 Score=51.61 Aligned_cols=50 Identities=18% Similarity=0.317 Sum_probs=31.3
Q ss_pred eeeceeeCCCCCcHhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCcceec
Q 005372 82 YQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQ 133 (699)
Q Consensus 82 F~FD~VF~~~~~sQ~~Vf~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTm~ 133 (699)
++||.+.... ..+..++. .+..+++..-.+....|+-||++|+||||.+.
T Consensus 121 ~tfd~f~~~~-~~~~~~~~-~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 121 IHLSDIDVNN-ASRMEAFS-AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCGGGSCCCS-HHHHHHHH-HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHH
T ss_pred CCHhhCcCCC-hHHHHHHH-HHHHHHHhccccCCceEEEECCCCCCHHHHHH
Confidence 5677655432 13344554 34455555434445678889999999999864
No 73
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=84.92 E-value=0.36 Score=41.45 Aligned_cols=34 Identities=29% Similarity=0.428 Sum_probs=28.3
Q ss_pred ccCcccCHHHHhcCCCCcHHHHHHHHHHHhcCCCC
Q 005372 586 DFLNTASREELVELKGIGQRLADYICELRQSSPVK 620 (699)
Q Consensus 586 v~iNtA~~~eL~~lpGIG~k~A~~Ii~~R~~~pf~ 620 (699)
.+|-.|+.++|..+||||+++|++|+++-. .||.
T Consensus 56 ~~l~~as~~eL~~i~GIG~~~a~~I~~~l~-~~~~ 89 (91)
T 2a1j_B 56 EQLIAASREDLALCPGLGPQKARRLFDVLH-EPFL 89 (91)
T ss_dssp HHHHSCCHHHHHTSSSCCSHHHHHHHHHHH-SCSC
T ss_pred HHHHhCCHHHHHhCCCCCHHHHHHHHHHHh-hhhc
Confidence 456689999999999999999999998863 3554
No 74
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=83.66 E-value=0.43 Score=43.17 Aligned_cols=44 Identities=20% Similarity=0.338 Sum_probs=30.4
Q ss_pred ccccCcccCHHHHhcCCCCcHHHHHHHHHHHhcC---CCCCHHHHhh
Q 005372 584 YIDFLNTASREELVELKGIGQRLADYICELRQSS---PVKSLSDLEK 627 (699)
Q Consensus 584 ~~v~iNtA~~~eL~~lpGIG~k~A~~Ii~~R~~~---pf~~~~dL~~ 627 (699)
..-.|..|+.++|..++|||+.+|++|++...+. .|.+-.|+.+
T Consensus 48 Tve~va~a~~~eL~~i~GIse~ka~kIi~aA~kl~~~gF~ta~e~~~ 94 (114)
T 1b22_A 48 TVEAVAYAPKKELINIKGISEAKADKILAEAAKLVPMGFTTATEFHQ 94 (114)
T ss_dssp SGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHHHSCCC---------
T ss_pred cHHHHHhCCHHHHHHccCCCHHHHHHHHHHHHHHcccCCCcHHHHHH
Confidence 3467789999999999999999999999988754 5888777754
No 75
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=83.33 E-value=0.76 Score=48.94 Aligned_cols=33 Identities=33% Similarity=0.485 Sum_probs=29.0
Q ss_pred cCHHHHhcCCCCcHHHHHHHHHHHhcCCCCCHHHHhh
Q 005372 591 ASREELVELKGIGQRLADYICELRQSSPVKSLSDLEK 627 (699)
Q Consensus 591 A~~~eL~~lpGIG~k~A~~Ii~~R~~~pf~~~~dL~~ 627 (699)
.+..+|..|||||+++|+++.+ + ++++++||.+
T Consensus 95 ~~l~~l~~V~GiGpk~a~~l~~--~--Gi~tledL~~ 127 (335)
T 2fmp_A 95 SSINFLTRVSGIGPSAARKFVD--E--GIKTLEDLRK 127 (335)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHH--T--TCCSHHHHHT
T ss_pred hHHHHHhCCCCCCHHHHHHHHH--c--CCCCHHHHHH
Confidence 5678999999999999999943 3 9999999987
No 76
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=82.16 E-value=0.4 Score=44.18 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=20.1
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCccee
Q 005372 106 LIPGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 106 lV~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
+++.+..+....++-||++|+|||+.+
T Consensus 34 l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 34 TIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp HHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred HHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 444444466667889999999999875
No 77
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=81.28 E-value=0.73 Score=46.07 Aligned_cols=30 Identities=33% Similarity=0.510 Sum_probs=25.5
Q ss_pred CcccCHHHHhcCCCCcHHHHHHHH-HHHhcC
Q 005372 588 LNTASREELVELKGIGQRLADYIC-ELRQSS 617 (699)
Q Consensus 588 iNtA~~~eL~~lpGIG~k~A~~Ii-~~R~~~ 617 (699)
|-..+.+.|..+||||+|+|++|+ +++++-
T Consensus 117 I~~~d~~~L~~vpGIG~KtA~rIi~elk~kl 147 (212)
T 2ztd_A 117 LADGNVAALTRVPGIGKRGAERMVLELRDKV 147 (212)
T ss_dssp HHTTCHHHHHTSTTCCHHHHHHHHHHHTTTC
T ss_pred HHhCCHHHHhhCCCCCHHHHHHHHHHHHHhh
Confidence 667899999999999999999999 555543
No 78
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=80.40 E-value=1.9 Score=46.38 Aligned_cols=33 Identities=15% Similarity=0.361 Sum_probs=27.8
Q ss_pred CHHHHhcCCCCcHHHHHHHHHHHhcCCCCCHHHHhhc
Q 005372 592 SREELVELKGIGQRLADYICELRQSSPVKSLSDLEKI 628 (699)
Q Consensus 592 ~~~eL~~lpGIG~k~A~~Ii~~R~~~pf~~~~dL~~v 628 (699)
...+|..|||||+|+|+++. ++ ++++++||..-
T Consensus 100 ~l~~l~~I~GvG~kta~~l~--~~--Gi~tledL~~~ 132 (360)
T 2ihm_A 100 TMKLFTQVFGVGVKTANRWY--QE--GLRTLDELREQ 132 (360)
T ss_dssp HHHHHHTSTTCCHHHHHHHH--HT--TCCSHHHHHTC
T ss_pred HHHHHhCCCCCCHHHHHHHH--Hc--CCCCHHHHHhc
Confidence 45688999999999999994 33 89999999853
No 79
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=80.13 E-value=1.1 Score=48.41 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=27.4
Q ss_pred CHHHHhcCCCCcHHHHHHHHHHHhcCCCCCHHHHhh
Q 005372 592 SREELVELKGIGQRLADYICELRQSSPVKSLSDLEK 627 (699)
Q Consensus 592 ~~~eL~~lpGIG~k~A~~Ii~~R~~~pf~~~~dL~~ 627 (699)
...+|..|||||+|+|+++. ++ ++++++||.+
T Consensus 119 ~l~~l~~I~GvGpk~a~~ly--~~--Gi~tledL~~ 150 (381)
T 1jms_A 119 SFKLFTSVFGVGLKTAEKWF--RM--GFRTLSKIQS 150 (381)
T ss_dssp HHHHHHTSTTCCHHHHHHHH--HT--TCCSHHHHHH
T ss_pred HHHHHHccCCCCHHHHHHHH--Hc--CCCcHHHHHh
Confidence 35688899999999999994 33 8999999985
No 80
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=78.89 E-value=0.46 Score=43.83 Aligned_cols=28 Identities=21% Similarity=0.224 Sum_probs=20.3
Q ss_pred chhhhhcCCCCEEEEeeccCCCCCccee
Q 005372 105 PLIPGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 105 plV~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
.+++.+..+....++-||++|+|||+.+
T Consensus 33 ~l~~~l~~~~~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 33 RAIQILSRRTKNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp HHHHHHTSSSSCEEEEESCGGGCHHHHH
T ss_pred HHHHHHhCCCCCceEEECCCCCCHHHHH
Confidence 3444444455667899999999999865
No 81
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=77.42 E-value=0.86 Score=46.96 Aligned_cols=36 Identities=14% Similarity=0.253 Sum_probs=23.0
Q ss_pred HHHHhhccchhhhhcC--CC--CEEEEeeccCCCCCccee
Q 005372 97 KIFYSEVNPLIPGIFH--GR--NATVFAYGATGSGKTYTM 132 (699)
Q Consensus 97 ~Vf~~~v~plV~~vl~--G~--N~tIfAYGqTGSGKTyTm 132 (699)
.+.+..+..++.+.+. |. ...++-||++|+|||+..
T Consensus 14 ~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 14 AFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp HHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 3445555555555443 22 236788999999999854
No 82
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=76.93 E-value=1.7 Score=46.30 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=26.7
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHhcCCCCCHHHHhhc
Q 005372 593 REELVELKGIGQRLADYICELRQSSPVKSLSDLEKI 628 (699)
Q Consensus 593 ~~eL~~lpGIG~k~A~~Ii~~R~~~pf~~~~dL~~v 628 (699)
.+.|..|||||+|+|+++.+ + ++++++||.+-
T Consensus 95 l~ll~~v~GiG~k~a~~l~~--~--Gi~tledL~~a 126 (335)
T 2bcq_A 95 LELFSNIWGAGTKTAQMWYQ--Q--GFRSLEDIRSQ 126 (335)
T ss_dssp HHHHHTSTTCCHHHHHHHHH--T--TCCSHHHHHHH
T ss_pred HHHHhcCCCcCHHHHHHHHH--c--CCCCHHHHHHH
Confidence 44567999999999999954 2 99999999874
No 83
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=76.31 E-value=1.2 Score=44.63 Aligned_cols=47 Identities=19% Similarity=0.272 Sum_probs=30.8
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHhc---CCCCCHHHHhhcCCCH-HHHHHhhc
Q 005372 593 REELVELKGIGQRLADYICELRQS---SPVKSLSDLEKIGLST-KQVYNLFG 640 (699)
Q Consensus 593 ~~eL~~lpGIG~k~A~~Ii~~R~~---~pf~~~~dL~~vGi~~-~~~~~l~~ 640 (699)
...|..|||||++.|++++++=.. -.=.+.|||.+| ||+ +..+.|.+
T Consensus 167 ~s~LdgIpGIG~k~ak~Ll~~FgSl~~i~~As~EeL~~V-IG~~~~A~~I~~ 217 (220)
T 2nrt_A 167 RSVLDNVPGIGPIRKKKLIEHFGSLENIRSASLEEIARV-IGSTEIARRVLD 217 (220)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHCSHHHHHTSCHHHHHHH-HTCHHHHHHHHH
T ss_pred cccccCCCCcCHHHHHHHHHHcCCHHHHHhCCHHHHHHH-hChHHHHHHHHH
Confidence 467899999999999999985110 011245666666 665 55555543
No 84
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=76.18 E-value=1.7 Score=47.25 Aligned_cols=52 Identities=19% Similarity=0.287 Sum_probs=38.4
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHhcC---CCCCHHHHhhcCCCHHHHHHhhccccc
Q 005372 593 REELVELKGIGQRLADYICELRQSS---PVKSLSDLEKIGLSTKQVYNLFGKAAK 644 (699)
Q Consensus 593 ~~eL~~lpGIG~k~A~~Ii~~R~~~---pf~~~~dL~~vGi~~~~~~~l~~~~~~ 644 (699)
...|..|||||+.+|++++++=-.. --.+.+||..-|||.+++..|.+--+.
T Consensus 467 eamLtAIaGIGp~tAeRLLEkFGSVe~Vm~AteDELRedGIGekqarrI~gl~~l 521 (685)
T 4gfj_A 467 YASLISIRGIDRERAERLLKKYGGYSKVREAGVEELREDGLTDAQIRELKGLKTL 521 (685)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHTSHHHHHHSCHHHHHHTTCCHHHHHHHHTCHHH
T ss_pred eeeeeccCCCCHHHHHHHHHHhcCHHHHHhCCHHHHHHccccHHHHHHHhhHHHH
Confidence 6779999999999999999952100 124567883339999999998875543
No 85
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=76.18 E-value=0.91 Score=37.35 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.8
Q ss_pred cccCHHHHhcCCCCcHHHHHHHHHH
Q 005372 589 NTASREELVELKGIGQRLADYICEL 613 (699)
Q Consensus 589 NtA~~~eL~~lpGIG~k~A~~Ii~~ 613 (699)
--++.+||..+||||++++++|..|
T Consensus 48 ~~~s~~eL~~v~Gig~k~~~~i~~~ 72 (75)
T 2duy_A 48 PYARVEDLLKVKGIGPATLERLRPY 72 (75)
T ss_dssp CCSSGGGGGGSTTCCHHHHHHHGGG
T ss_pred ccCCHHHHHhCCCCCHHHHHHHHHh
Confidence 4589999999999999999998643
No 86
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=75.93 E-value=0.58 Score=49.00 Aligned_cols=46 Identities=22% Similarity=0.231 Sum_probs=29.9
Q ss_pred eeeeceeeCCCCCcHhHHHHhhccchhhhhcCCCC--EEEEeeccCCCCCccee
Q 005372 81 CYQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRN--ATVFAYGATGSGKTYTM 132 (699)
Q Consensus 81 ~F~FD~VF~~~~~sQ~~Vf~~~v~plV~~vl~G~N--~tIfAYGqTGSGKTyTm 132 (699)
.+.||.+.+.+. .. ..+..+++.+-.|.. ..++-||++|+|||+..
T Consensus 40 ~~~~~~ivG~~~-----~~-~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 40 RQASQGMVGQLA-----AR-RAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CSEETTEESCHH-----HH-HHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred CcchhhccChHH-----HH-HHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence 367999887642 11 123334444455554 37888999999999865
No 87
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=75.71 E-value=1.3 Score=44.02 Aligned_cols=55 Identities=20% Similarity=0.166 Sum_probs=34.3
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHhcCCCCCHHHHhhcCCCHHHHHHhhccccccccCC
Q 005372 593 REELVELKGIGQRLADYICELRQSSPVKSLSDLEKIGLSTKQVYNLFGKAAKGIFDR 649 (699)
Q Consensus 593 ~~eL~~lpGIG~k~A~~Ii~~R~~~pf~~~~dL~~vGi~~~~~~~l~~~~~~~~~~~ 649 (699)
.++|..|||||+|.|+++.=+=-+.+=...++|.+. |. ...++++..-.++-|.+
T Consensus 25 I~~l~~LPGIG~KsA~RlA~hLL~~~~~~~~~La~a-l~-~~~~~i~~C~~C~nlte 79 (212)
T 3vdp_A 25 IEELSKLPGIGPKTAQRLAFFIINMPLDEVRSLSQA-II-EAKEKLRYCKICFNITD 79 (212)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHTTSCHHHHHHHHHH-HH-HHHHHCEECTTTCCEES
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHcCCHHHHHHHHHH-HH-HHHHhCCcCCCCCCCCC
Confidence 368999999999999999877633332223333321 11 34555666666777755
No 88
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=74.26 E-value=1.8 Score=40.04 Aligned_cols=42 Identities=29% Similarity=0.677 Sum_probs=24.9
Q ss_pred eeeeceeeCCCCCcHhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCcceec
Q 005372 81 CYQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQ 133 (699)
Q Consensus 81 ~F~FD~VF~~~~~sQ~~Vf~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTm~ 133 (699)
.+.||..+.. .+ .+.+. .+..+ .|. .++-||++|+|||+.+.
T Consensus 13 ~~~~~~f~~g--~n-~~~~~-~l~~~-----~g~--~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 13 YPSFDKFLGT--EN-AELVY-VLRHK-----HGQ--FIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp CCCCCCCCSC--CT-HHHHH-HCCCC-----CCS--EEEEESSSTTTTCHHHH
T ss_pred ccchhhcCcC--cc-HHHHH-HHHhc-----CCC--EEEEECCCCCCHHHHHH
Confidence 4667666542 23 23333 23333 443 46669999999999763
No 89
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=73.83 E-value=1.1 Score=38.95 Aligned_cols=44 Identities=25% Similarity=0.422 Sum_probs=31.7
Q ss_pred CHHHHhcCCCCcHHHHHHHHHHHhcCCCCCHHHHhhcCCCHHHHHHhhc
Q 005372 592 SREELVELKGIGQRLADYICELRQSSPVKSLSDLEKIGLSTKQVYNLFG 640 (699)
Q Consensus 592 ~~~eL~~lpGIG~k~A~~Ii~~R~~~pf~~~~dL~~vGi~~~~~~~l~~ 640 (699)
+..+|..||+||+++++...+. ++.+++||...| ......+|+.
T Consensus 2 ~~~~L~~LPNiG~~~e~~L~~v----GI~s~e~L~~~G-a~~ay~rL~~ 45 (93)
T 3bqs_A 2 SLANLSELPNIGKVLEQDLIKA----GIKTPVELKDVG-SKEAFLRIWE 45 (93)
T ss_dssp CCSCGGGSTTCCHHHHHHHHHT----TCCSHHHHHHHH-HHHHHHHHHT
T ss_pred ChHHhhcCCCCCHHHHHHHHHc----CCCCHHHHHhCC-HHHHHHHHHH
Confidence 3467999999999999876543 799999998775 2234445553
No 90
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=72.85 E-value=2.1 Score=42.69 Aligned_cols=24 Identities=42% Similarity=0.508 Sum_probs=21.7
Q ss_pred cCHHHHhcCCCCcHHHHHHHHHHH
Q 005372 591 ASREELVELKGIGQRLADYICELR 614 (699)
Q Consensus 591 A~~~eL~~lpGIG~k~A~~Ii~~R 614 (699)
...++|..|||||++.|..|+-+=
T Consensus 118 ~~~~~L~~lpGIG~kTA~~il~~a 141 (218)
T 1pu6_A 118 VTREWLLDQKGIGKESADAILCYA 141 (218)
T ss_dssp CCHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHH
Confidence 468899999999999999999875
No 91
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=72.61 E-value=1.8 Score=43.56 Aligned_cols=55 Identities=20% Similarity=0.140 Sum_probs=34.4
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHhcCCCCCHHHHhhcCCCHHHHHHhhccccccccCC
Q 005372 593 REELVELKGIGQRLADYICELRQSSPVKSLSDLEKIGLSTKQVYNLFGKAAKGIFDR 649 (699)
Q Consensus 593 ~~eL~~lpGIG~k~A~~Ii~~R~~~pf~~~~dL~~vGi~~~~~~~l~~~~~~~~~~~ 649 (699)
.++|..|||||+|.|+++.=+=-+.+=.....|.+. |. ...++++..-.++-|.+
T Consensus 11 I~~l~~LPGIG~KSA~RlA~hLL~~~~~~~~~La~a-l~-~~~~~i~~C~~C~nlte 65 (228)
T 1vdd_A 11 IRELSRLPGIGPKSAQRLAFHLFEQPREDIERLASA-LL-EAKRDLHVCPICFNITD 65 (228)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHSSSCHHHHHHHHHH-HH-HHHHHCEECSSSCCEES
T ss_pred HHHHhHCCCCCHHHHHHHHHHHHcCCHHHHHHHHHH-HH-HHHhcCeEcCCCCCCcC
Confidence 368999999999999999877633332222333221 11 34556666666777754
No 92
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=72.28 E-value=1 Score=46.49 Aligned_cols=49 Identities=27% Similarity=0.445 Sum_probs=28.9
Q ss_pred eeeeceeeCCCCCcHhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCcceec
Q 005372 81 CYQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQ 133 (699)
Q Consensus 81 ~F~FD~VF~~~~~sQ~~Vf~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTm~ 133 (699)
.|+||.++.... + ...+.. +..+++.--. ....++-||++|+|||+.+.
T Consensus 7 ~~~f~~fv~g~~-~-~~a~~~-~~~~~~~~~~-~~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 7 KYTLENFIVGEG-N-RLAYEV-VKEALENLGS-LYNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp TCCSSSCCCCTT-T-HHHHHH-HHHHHHTTTT-SCSSEEEECSSSSSHHHHHH
T ss_pred CCCcccCCCCCc-H-HHHHHH-HHHHHhCcCC-CCCeEEEECCCCCcHHHHHH
Confidence 488988873322 2 334432 4444443211 23457889999999998763
No 93
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=71.76 E-value=0.82 Score=48.33 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=19.5
Q ss_pred hcCCCCEEEEeeccCCCCCccee
Q 005372 110 IFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 110 vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
+-.|...+++-||++|+|||.++
T Consensus 40 i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 40 LMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHTTCCCEEEEECCCSHHHHHHH
T ss_pred hcCCCCCeEEEECCCCCCHHHHH
Confidence 34677889999999999999875
No 94
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=71.66 E-value=2.2 Score=42.64 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=22.3
Q ss_pred CHHHHhcCCCCcHHHHHHHHHHHhcC
Q 005372 592 SREELVELKGIGQRLADYICELRQSS 617 (699)
Q Consensus 592 ~~~eL~~lpGIG~k~A~~Ii~~R~~~ 617 (699)
+.++|..|||||++.|..|+-+=-..
T Consensus 107 ~~~~L~~lpGIG~~TA~~il~~a~~~ 132 (225)
T 1kg2_A 107 TFEEVAALPGVGRSTAGAILSLSLGK 132 (225)
T ss_dssp SHHHHHTSTTCCHHHHHHHHHHHHCC
T ss_pred HHHHHhcCCCCcHHHHHHHHHHhCCC
Confidence 58999999999999999999875333
No 95
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=71.30 E-value=0.57 Score=48.54 Aligned_cols=43 Identities=23% Similarity=0.474 Sum_probs=26.7
Q ss_pred eeeeceeeCCCCCcHhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCccee
Q 005372 81 CYQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 81 ~F~FD~VF~~~~~sQ~~Vf~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
.|.||.+++.+. +... +...++.+....|+-||++|+|||+..
T Consensus 20 ~~~f~~i~G~~~-----~~~~----l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 20 VFPFSAIVGQED-----MKLA----LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCGGGSCSCHH-----HHHH----HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCchhccChHH-----HHHH----HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 488999887532 2221 122223333334889999999999864
No 96
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=71.15 E-value=2.3 Score=42.36 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=21.4
Q ss_pred cCHHHHhcCCCCcHHHHHHHHHHH
Q 005372 591 ASREELVELKGIGQRLADYICELR 614 (699)
Q Consensus 591 A~~~eL~~lpGIG~k~A~~Ii~~R 614 (699)
...++|..|||||++.|..|+-+=
T Consensus 112 ~~~~~L~~lpGIG~~TA~~il~~~ 135 (221)
T 1kea_A 112 RNRKAILDLPGVGKYTCAAVMCLA 135 (221)
T ss_dssp SCHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHh
Confidence 467899999999999999999864
No 97
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=71.01 E-value=1.1 Score=44.91 Aligned_cols=44 Identities=18% Similarity=0.350 Sum_probs=20.2
Q ss_pred eeeceeeCCCCCcHhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCccee
Q 005372 82 YQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 82 F~FD~VF~~~~~sQ~~Vf~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
|+||.+.+.+. .-..+. ..+..+.. .+..|+-||++|+|||+..
T Consensus 3 ~~f~~~ig~~~-~~~~~~-----~~~~~~~~-~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 3 EYKDNLLGEAN-SFLEVL-----EQVSHLAP-LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp -------CCCH-HHHHHH-----HHHHHHTT-SCSCEEEECCTTSCHHHHH
T ss_pred cccccceeCCH-HHHHHH-----HHHHHHhC-CCCCEEEECCCCCcHHHHH
Confidence 78999887542 212222 12222222 2356778999999999754
No 98
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=70.97 E-value=2.4 Score=41.87 Aligned_cols=28 Identities=32% Similarity=0.476 Sum_probs=24.6
Q ss_pred cCcccCHHHHhcCCCCcHHHHHHHHHHH
Q 005372 587 FLNTASREELVELKGIGQRLADYICELR 614 (699)
Q Consensus 587 ~iNtA~~~eL~~lpGIG~k~A~~Ii~~R 614 (699)
.|=.|+.++|..+||||+++|++|.++-
T Consensus 187 ~l~~a~~e~L~~v~GiG~~~a~~i~~~~ 214 (219)
T 2bgw_A 187 RFFTASKAEISKVEGIGEKRAEEIKKIL 214 (219)
T ss_dssp HHTTCCHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHhCCHHHHhhCCCCCHHHHHHHHHHH
Confidence 3456899999999999999999999875
No 99
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=70.12 E-value=1.9 Score=37.59 Aligned_cols=43 Identities=23% Similarity=0.404 Sum_probs=30.9
Q ss_pred CHHHHhcCCCCcHHHHHHHHHHHhcCCCCCHHHHhhcCCCHHHHHHhh
Q 005372 592 SREELVELKGIGQRLADYICELRQSSPVKSLSDLEKIGLSTKQVYNLF 639 (699)
Q Consensus 592 ~~~eL~~lpGIG~k~A~~Ii~~R~~~pf~~~~dL~~vGi~~~~~~~l~ 639 (699)
+..+|..||+||+++++...+. ++.+++||..+|= .....+|+
T Consensus 2 sm~~L~dLPNig~~~e~~L~~~----GI~t~~~Lr~~Ga-~~ay~rLk 44 (93)
T 3mab_A 2 SLANLSELPNIGKVLEQDLIKA----GIKTPVELKDVGS-KEAFLRIW 44 (93)
T ss_dssp -CCCGGGSTTCCHHHHHHHHHT----TCCSHHHHHHHCH-HHHHHHHH
T ss_pred CHHHHhhCCCCCHHHHHHHHHc----CCCCHHHHHhCCH-HHHHHHHH
Confidence 3467999999999999866543 7999999988762 23444444
No 100
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=69.94 E-value=4.3 Score=46.38 Aligned_cols=53 Identities=13% Similarity=0.158 Sum_probs=34.3
Q ss_pred ccCcccCHHHHhcCCCCcHHHHHHHHHHHhcCCCCCHHHHhh---c-CCCHHHHHHh
Q 005372 586 DFLNTASREELVELKGIGQRLADYICELRQSSPVKSLSDLEK---I-GLSTKQVYNL 638 (699)
Q Consensus 586 v~iNtA~~~eL~~lpGIG~k~A~~Ii~~R~~~pf~~~~dL~~---v-Gi~~~~~~~l 638 (699)
.+|=+.+.++|..|+|+|+|.|++|++.=++..=..+.-|.. + +||....+.|
T Consensus 472 ~Dly~L~~~~L~~l~g~geKsa~nL~~aIe~sk~~~l~r~l~aLGI~~vG~~~a~~L 528 (586)
T 4glx_A 472 ADLFKLTAGKLTGLERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGL 528 (586)
T ss_dssp GGGGTCCHHHHHTSTTCCHHHHHHHHHHHHHHTBCCHHHHHHHTTCTTCCHHHHHHH
T ss_pred HHHhCCCHHHHhcccCccHHHHHHHHHHHHHHcCCCHHHHHHHcCCCchhHHHHHHH
Confidence 344477899999999999999999987655332222344433 2 3455554443
No 101
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=69.78 E-value=2.5 Score=41.76 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.6
Q ss_pred cCHHHHhcCCCCcHHHHHHHHHH
Q 005372 591 ASREELVELKGIGQRLADYICEL 613 (699)
Q Consensus 591 A~~~eL~~lpGIG~k~A~~Ii~~ 613 (699)
...++|..|||||++.|..|+-+
T Consensus 114 ~~~~~L~~lpGIG~kTA~~il~~ 136 (207)
T 3fhg_A 114 LARERLLNIKGIGMQEASHFLRN 136 (207)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCcCHHHHHHHHHH
Confidence 46788999999999999999876
No 102
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=69.54 E-value=2.4 Score=44.30 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=29.7
Q ss_pred hcCCCCcHHHHHHHHHHHhcCCCCCHHHHhh-c-CC-CHHHHHHhh
Q 005372 597 VELKGIGQRLADYICELRQSSPVKSLSDLEK-I-GL-STKQVYNLF 639 (699)
Q Consensus 597 ~~lpGIG~k~A~~Ii~~R~~~pf~~~~dL~~-v-Gi-~~~~~~~l~ 639 (699)
-.+||||+|.|.++|+ .|.++|.+.+ + .+ .++.-++|+
T Consensus 206 PGVpGIG~KTA~kLL~-----~~gsle~i~~~~~~~~~~~~~~~L~ 246 (290)
T 1exn_A 206 RGVEGIGAKRGYNIIR-----EFGNVLDIIDQLPLPGKQKYIQNLN 246 (290)
T ss_dssp CCCTTCCHHHHHHHHH-----HHCSHHHHHHHCSCSCCCHHHHHHH
T ss_pred CCCCcCCHhHHHHHHH-----HcCCHHHHHHHHHHhccHHHHHHHH
Confidence 3589999999999998 5889999976 6 67 555555554
No 103
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=68.81 E-value=2.7 Score=41.48 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=21.6
Q ss_pred cCHHHHhcCCCCcHHHHHHHHHHH
Q 005372 591 ASREELVELKGIGQRLADYICELR 614 (699)
Q Consensus 591 A~~~eL~~lpGIG~k~A~~Ii~~R 614 (699)
...++|..|||||++.|..|+-+=
T Consensus 106 ~~~~~L~~l~GIG~~tA~~il~~~ 129 (211)
T 2abk_A 106 EDRAALEALPGVGRKTANVVLNTA 129 (211)
T ss_dssp SCHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCChHHHHHHHHHH
Confidence 467899999999999999999864
No 104
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=68.70 E-value=1 Score=51.71 Aligned_cols=46 Identities=20% Similarity=0.345 Sum_probs=0.0
Q ss_pred ccCcccCHHHHhcCCCCcHHHHHHHHHHHhcC-CCCCHHHHhhcCCC
Q 005372 586 DFLNTASREELVELKGIGQRLADYICELRQSS-PVKSLSDLEKIGLS 631 (699)
Q Consensus 586 v~iNtA~~~eL~~lpGIG~k~A~~Ii~~R~~~-pf~~~~dL~~vGi~ 631 (699)
-.|-.|+.++|..+||||+++|+.|+++-... --.-+++|.+.|+.
T Consensus 553 e~L~~As~eeL~~I~GIG~~~A~sI~~ff~~~~n~~~i~~L~~~Gv~ 599 (615)
T 3sgi_A 553 DAIAAASTDQLAAVEGVGPTIAAAVTEWFAVDWHREIVDKWRAAGVR 599 (615)
T ss_dssp -----------------------------------------------
T ss_pred HHHHhCCHHHHhhCCCCCHHHHHHHHHHHcCHHHHHHHHHHHHcCCC
Confidence 45678889999999999999999999876433 34455666655654
No 105
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=68.40 E-value=1.2 Score=44.77 Aligned_cols=51 Identities=22% Similarity=0.242 Sum_probs=28.8
Q ss_pred eeeeceeeCCCCCcHhHHHHhhccchh-----hhhcCCCCEEEEeeccCCCCCccee
Q 005372 81 CYQLDSFFGQEDESVSKIFYSEVNPLI-----PGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 81 ~F~FD~VF~~~~~sQ~~Vf~~~v~plV-----~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
.+.||.+.+.+. ..+.+......++- +..--.....++-||++|+|||+.+
T Consensus 13 ~~~~~~i~G~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEK-QMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHH-HHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHH-HHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 478999988653 22333332222211 1110123445888999999999864
No 106
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=68.38 E-value=1.1 Score=44.64 Aligned_cols=50 Identities=20% Similarity=0.248 Sum_probs=28.5
Q ss_pred eeeeceeeCCCCCcHhHHHHhhccchh-----hhhcCCCCEEEEeeccCCCCCccee
Q 005372 81 CYQLDSFFGQEDESVSKIFYSEVNPLI-----PGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 81 ~F~FD~VF~~~~~sQ~~Vf~~~v~plV-----~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
.+.||.+.+.+. ..+.+.. .+..+- ..+-......|+-||++|+|||+.+
T Consensus 7 ~~~~~~i~G~~~-~~~~l~~-~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 7 NVRFKDMAGNEE-AKEEVVE-IVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCSTTSSSCTT-THHHHHH-HHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CCCHHHhCCcHH-HHHHHHH-HHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence 378899998764 3333332 222111 1111112334889999999999865
No 107
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=67.83 E-value=1.3 Score=45.00 Aligned_cols=50 Identities=20% Similarity=0.365 Sum_probs=29.5
Q ss_pred eeeceeeCCCCCcHhHHHHhhccchhh-hhcCC---CCEEEEeeccCCCCCccee
Q 005372 82 YQLDSFFGQEDESVSKIFYSEVNPLIP-GIFHG---RNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 82 F~FD~VF~~~~~sQ~~Vf~~~v~plV~-~vl~G---~N~tIfAYGqTGSGKTyTm 132 (699)
..||.+.+.+. .-+.+......|+.. ..+.| ....|+-||++|+|||+.+
T Consensus 18 ~~~~~i~G~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 18 VEWTDIAGQDV-AKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCGGGSCCCHH-HHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhCChHH-HHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 67888887543 223343333333221 12222 3457899999999999864
No 108
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=67.60 E-value=3 Score=41.72 Aligned_cols=24 Identities=29% Similarity=0.671 Sum_probs=21.5
Q ss_pred cCHHHHhcCCCCcHHHHHHHHHHH
Q 005372 591 ASREELVELKGIGQRLADYICELR 614 (699)
Q Consensus 591 A~~~eL~~lpGIG~k~A~~Ii~~R 614 (699)
...++|..|||||++.|..|+-+=
T Consensus 110 ~~~~~L~~lpGIG~~TA~~il~~a 133 (226)
T 1orn_A 110 RDRDELMKLPGVGRKTANVVVSVA 133 (226)
T ss_dssp SCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCccHHHHHHHHHHH
Confidence 368999999999999999999864
No 109
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=67.49 E-value=1.9 Score=41.14 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=17.6
Q ss_pred CHHHHhcCCCCcHHHHHHHHHH
Q 005372 592 SREELVELKGIGQRLADYICEL 613 (699)
Q Consensus 592 ~~~eL~~lpGIG~k~A~~Ii~~ 613 (699)
+.++|..|||||+..|.+|.-+
T Consensus 102 ~~~~L~~LpGVG~yTAdav~~F 123 (161)
T 4e9f_A 102 QWKYPIELHGIGKYGNDSYRIF 123 (161)
T ss_dssp CCSSGGGSTTCCHHHHHHHHHH
T ss_pred ChhhhhcCCCchHHHHHHHHHH
Confidence 4578888888888888887665
No 110
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=67.25 E-value=1.2 Score=44.08 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=15.7
Q ss_pred CCEEEEeeccCCCCCccee
Q 005372 114 RNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 114 ~N~tIfAYGqTGSGKTyTm 132 (699)
....|+-||++|+|||+..
T Consensus 38 ~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3456899999999999865
No 111
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=66.93 E-value=3.4 Score=46.92 Aligned_cols=46 Identities=26% Similarity=0.474 Sum_probs=38.6
Q ss_pred HhcCCCCcHHHHHHHHHHHhcC-----------CCCCHHHHhhc-CCCHHHHHHhhcc
Q 005372 596 LVELKGIGQRLADYICELRQSS-----------PVKSLSDLEKI-GLSTKQVYNLFGK 641 (699)
Q Consensus 596 L~~lpGIG~k~A~~Ii~~R~~~-----------pf~~~~dL~~v-Gi~~~~~~~l~~~ 641 (699)
|..|||||++++..|-++-++. ....+.+|.+| ||||++..+|.+.
T Consensus 55 ~~~lp~iG~~~~~~i~~~v~~g~~~l~~~~~~~~~~~~~~l~~v~GvGpk~A~~~~~~ 112 (575)
T 3b0x_A 55 LMELPGVGPDLAEKILEFLRTGKVRKHEELSRKVPRGVLEVMEVPGVGPKTARLLYEG 112 (575)
T ss_dssp HHTSTTCCHHHHHHHHHHHHHSSCHHHHHHHHHSCHHHHHHHTSTTTCHHHHHHHHHT
T ss_pred HHhCCCCCHHHHHHHHHHHHcCcHHHHhhhhhhhHHHHHHHhcCCCcCHHHHHHHHHh
Confidence 9999999999999998875432 23557888999 9999999999775
No 112
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=66.66 E-value=1.7 Score=42.01 Aligned_cols=23 Identities=43% Similarity=0.603 Sum_probs=18.0
Q ss_pred hhhhcCCCCEEEEeeccCCCCCcce
Q 005372 107 IPGIFHGRNATVFAYGATGSGKTYT 131 (699)
Q Consensus 107 V~~vl~G~N~tIfAYGqTGSGKTyT 131 (699)
+..+++|.| ++..++||||||.+
T Consensus 45 i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 45 IMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHhcCCC--EEEECCCCCcHHHH
Confidence 345567776 67789999999987
No 113
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=66.55 E-value=1.6 Score=47.72 Aligned_cols=49 Identities=27% Similarity=0.409 Sum_probs=28.3
Q ss_pred eeeeeceeeCCCCCcHhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCcceec
Q 005372 80 ECYQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQ 133 (699)
Q Consensus 80 ~~F~FD~VF~~~~~sQ~~Vf~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTm~ 133 (699)
..|+||.+..... + ...+. .+..+.+. .|..-.++-||++|+||||.+.
T Consensus 100 ~~~tfd~fv~g~~-n-~~a~~-~~~~~a~~--~~~~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 100 PDYTFENFVVGPG-N-SFAYH-AALEVAKH--PGRYNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp TTCSGGGCCCCTT-T-HHHHH-HHHHHHHS--TTSSCCEEEECSSSSSHHHHHH
T ss_pred CCCChhhcCCCCc-h-HHHHH-HHHHHHhC--CCCCCeEEEECCCCCCHHHHHH
Confidence 3588988763222 3 22332 23333333 1213357889999999999763
No 114
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=66.42 E-value=1.4 Score=45.38 Aligned_cols=50 Identities=24% Similarity=0.264 Sum_probs=28.5
Q ss_pred eeeceeeCCCCCcHhHHHHhhccchhhh-hc----CCCCEEEEeeccCCCCCccee
Q 005372 82 YQLDSFFGQEDESVSKIFYSEVNPLIPG-IF----HGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 82 F~FD~VF~~~~~sQ~~Vf~~~v~plV~~-vl----~G~N~tIfAYGqTGSGKTyTm 132 (699)
+.||.+.+.+. .-+.+.+.+..|+... .+ -.....|+-||++|+|||+.+
T Consensus 12 ~~~~di~G~~~-~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 12 VTWEDIGGLED-VKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCGGGSCSCHH-HHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCHHHhCCHHH-HHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 67888887643 2233443333332110 11 123456888999999999764
No 115
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=66.30 E-value=2 Score=49.14 Aligned_cols=28 Identities=29% Similarity=0.328 Sum_probs=24.6
Q ss_pred cCcccCHHHHhcCCCCcHHHHHHHHHHH
Q 005372 587 FLNTASREELVELKGIGQRLADYICELR 614 (699)
Q Consensus 587 ~iNtA~~~eL~~lpGIG~k~A~~Ii~~R 614 (699)
.|-.|+.++|..|+|||+++|+.|+++=
T Consensus 537 ~l~~a~~e~l~~i~giG~~~A~si~~ff 564 (586)
T 4glx_A 537 ALEAASIEELQKVPDVGIVVASHVHNFF 564 (586)
T ss_dssp HHHHCCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHccCHHHHhcCCCccHHHHHHHHHHH
Confidence 4557899999999999999999999974
No 116
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=66.20 E-value=5.6 Score=46.15 Aligned_cols=29 Identities=17% Similarity=0.178 Sum_probs=22.2
Q ss_pred cccCcccCHHHHhcCCCCcHHHHHHHHHH
Q 005372 585 IDFLNTASREELVELKGIGQRLADYICEL 613 (699)
Q Consensus 585 ~v~iNtA~~~eL~~lpGIG~k~A~~Ii~~ 613 (699)
+-+|=+++.++|..|+|+|+|.|+.|++.
T Consensus 471 ~aDL~~L~~~~L~~l~gfG~Ksa~nLl~a 499 (671)
T 2owo_A 471 PADLFKLTAGKLTGLERMGPKSAQNVVNA 499 (671)
T ss_dssp GGGGGTCCHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHhhCHHHhhcccccchhHHHHHHHH
Confidence 34455667888888888888888888875
No 117
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=66.00 E-value=1.4 Score=41.49 Aligned_cols=16 Identities=38% Similarity=0.549 Sum_probs=14.1
Q ss_pred EEEeeccCCCCCccee
Q 005372 117 TVFAYGATGSGKTYTM 132 (699)
Q Consensus 117 tIfAYGqTGSGKTyTm 132 (699)
.++-||++|+|||+.+
T Consensus 40 ~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 40 HLLFSGPPGTGKTATA 55 (226)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4899999999999865
No 118
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=65.81 E-value=1.8 Score=41.13 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=17.0
Q ss_pred hhhcCCCCEEEEeeccCCCCCccee
Q 005372 108 PGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 108 ~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
+.+++|.| ++..++||||||.+.
T Consensus 35 ~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 35 PIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHccCCC--EEEECCCCCchHHHH
Confidence 34566766 567789999999654
No 119
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=65.30 E-value=1.7 Score=41.16 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=16.9
Q ss_pred hhhcCCCCEEEEeeccCCCCCcce
Q 005372 108 PGIFHGRNATVFAYGATGSGKTYT 131 (699)
Q Consensus 108 ~~vl~G~N~tIfAYGqTGSGKTyT 131 (699)
+.+++|.+ ++..++||||||.+
T Consensus 33 ~~~~~~~~--~li~~~TGsGKT~~ 54 (207)
T 2gxq_A 33 PLALEGKD--LIGQARTGTGKTLA 54 (207)
T ss_dssp HHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHcCCCC--EEEECCCCChHHHH
Confidence 34567776 56678999999986
No 120
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=65.10 E-value=1.6 Score=47.88 Aligned_cols=46 Identities=22% Similarity=0.221 Sum_probs=29.0
Q ss_pred eeeeceeeCCCCCcHhHHHHhhccchhhhhcCCCC--EEEEeeccCCCCCccee
Q 005372 81 CYQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRN--ATVFAYGATGSGKTYTM 132 (699)
Q Consensus 81 ~F~FD~VF~~~~~sQ~~Vf~~~v~plV~~vl~G~N--~tIfAYGqTGSGKTyTm 132 (699)
.|.||.+.+.+. +.. .+..+++.+..|.. ..++-||++|+|||+..
T Consensus 33 ~~~~~~iiG~~~-----~~~-~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 33 KQAASGLVGQEN-----ARE-ACGVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CSEETTEESCHH-----HHH-HHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hhchhhccCHHH-----HHH-HHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 477888887642 221 23334444445542 35777999999999864
No 121
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=64.85 E-value=3.5 Score=41.42 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=20.8
Q ss_pred cCHHHHhcCCCCcHHHHHHHHHHH
Q 005372 591 ASREELVELKGIGQRLADYICELR 614 (699)
Q Consensus 591 A~~~eL~~lpGIG~k~A~~Ii~~R 614 (699)
...++|..|||||++.|+.|+-+=
T Consensus 135 ~~~~~L~~lpGIG~kTA~~ill~a 158 (233)
T 2h56_A 135 TVIEKLTAIKGIGQWTAEMFMMFS 158 (233)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcCHHHHHHHHHHh
Confidence 346789999999999999999864
No 122
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=64.72 E-value=1.7 Score=41.71 Aligned_cols=45 Identities=11% Similarity=0.271 Sum_probs=25.8
Q ss_pred eeeceeeCCCCCcHhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCccee
Q 005372 82 YQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 82 F~FD~VF~~~~~sQ~~Vf~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
+.||.+++... + +.++. .+..++ ..+....++-||++|+|||+.+
T Consensus 25 ~~~~~~~~~~~-~-~~~~~-~l~~~~---~~~~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 25 ETFTSYYPAAG-N-DELIG-ALKSAA---SGDGVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSTTTSCC--C-C-HHHHH-HHHHHH---HTCSCSEEEEECSTTSSHHHHH
T ss_pred CChhhccCCCC-C-HHHHH-HHHHHH---hCCCCCeEEEECCCCCCHHHHH
Confidence 56776665221 2 33333 122222 2234567888999999999865
No 123
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=64.27 E-value=3.6 Score=41.03 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=19.8
Q ss_pred CHHHHh-cCCCCcHHHHHHHHHH
Q 005372 592 SREELV-ELKGIGQRLADYICEL 613 (699)
Q Consensus 592 ~~~eL~-~lpGIG~k~A~~Ii~~ 613 (699)
..++|. .|||||+|.|.-|+-+
T Consensus 122 ~re~Ll~~LpGVG~KTA~~vL~~ 144 (214)
T 3fhf_A 122 AREFLVRNIKGIGYKEASHFLRN 144 (214)
T ss_dssp HHHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHH
Confidence 467899 9999999999999876
No 124
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=64.05 E-value=3.7 Score=37.04 Aligned_cols=51 Identities=20% Similarity=0.254 Sum_probs=37.4
Q ss_pred CHHHHhcCCCCcHHHHHHHHHH--Hh-cC-CCCCHHHHhhc-CCCHHHHHHhhcccc
Q 005372 592 SREELVELKGIGQRLADYICEL--RQ-SS-PVKSLSDLEKI-GLSTKQVYNLFGKAA 643 (699)
Q Consensus 592 ~~~eL~~lpGIG~k~A~~Ii~~--R~-~~-pf~~~~dL~~v-Gi~~~~~~~l~~~~~ 643 (699)
+.++|..+ |||+..++++.+. .. +. -+.+.++|.++ ||++..+++|....-
T Consensus 24 ~I~~L~~~-GIg~~~i~kL~eAG~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA~ 79 (114)
T 1b22_A 24 PISRLEQC-GINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAA 79 (114)
T ss_dssp CHHHHHHT-TCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHH
T ss_pred cHHHHHhc-CCCHHHHHHHHHcCcCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHHH
Confidence 56677776 9999999988762 22 11 44556777888 999999999887654
No 125
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=63.82 E-value=3.8 Score=35.19 Aligned_cols=28 Identities=32% Similarity=0.312 Sum_probs=21.7
Q ss_pred cccccCcccCHHHHhcCCCCcHHHHHHHHH
Q 005372 583 EYIDFLNTASREELVELKGIGQRLADYICE 612 (699)
Q Consensus 583 ~~~v~iNtA~~~eL~~lpGIG~k~A~~Ii~ 612 (699)
.++..| .+..|+..|+|||+++|+.|=+
T Consensus 49 ~~P~~i--~s~~e~~~L~giG~ki~~~L~e 76 (87)
T 2kp7_A 49 RYPLPL--RSGKEAKILQHFGDRLCRMLDE 76 (87)
T ss_dssp HCCSCC--CSHHHHHTCTTTCHHHHHHHHH
T ss_pred hCCCCC--CCHHHHHHhhcccHHHHHHHHH
Confidence 444444 4678999999999999998754
No 126
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=63.82 E-value=1.7 Score=50.36 Aligned_cols=29 Identities=28% Similarity=0.347 Sum_probs=25.6
Q ss_pred ccCcccCHHHHhcCCCCcHHHHHHHHHHH
Q 005372 586 DFLNTASREELVELKGIGQRLADYICELR 614 (699)
Q Consensus 586 v~iNtA~~~eL~~lpGIG~k~A~~Ii~~R 614 (699)
..|-.|+.++|..+||||+++|+.|+++-
T Consensus 536 ~~l~~As~eeL~~i~GIG~~~A~sI~~ff 564 (671)
T 2owo_A 536 EALEAASIEELQKVPDVGIVVASHVHNFF 564 (671)
T ss_dssp HHHHTCCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHhCCHHHHhhcCCCCHHHHHHHHHHH
Confidence 34678999999999999999999999875
No 127
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=63.20 E-value=1.8 Score=44.58 Aligned_cols=41 Identities=29% Similarity=0.439 Sum_probs=24.6
Q ss_pred eeceeeCCCCCcHhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCccee
Q 005372 83 QLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 83 ~FD~VF~~~~~sQ~~Vf~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
.|+.+++.+. - +..+...+..|....++-||++|+|||+++
T Consensus 35 ~~~~i~g~~~-~--------~~~l~~~l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 35 NLDEVTAQDH-A--------VTVLKKTLKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp STTTCCSCCT-T--------HHHHHHHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred CHHHhhCCHH-H--------HHHHHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 5677776542 1 122333333453233888999999999875
No 128
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=63.01 E-value=1.7 Score=45.90 Aligned_cols=50 Identities=24% Similarity=0.352 Sum_probs=28.8
Q ss_pred eeeceeeCCCCCcHhHHHHhhccchhhh-h---cCCCCEEEEeeccCCCCCccee
Q 005372 82 YQLDSFFGQEDESVSKIFYSEVNPLIPG-I---FHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 82 F~FD~VF~~~~~sQ~~Vf~~~v~plV~~-v---l~G~N~tIfAYGqTGSGKTyTm 132 (699)
..||.+.+.+. .-+.+.+.+..|+... + +.+....|+-||++|+|||+..
T Consensus 81 ~~~~~i~G~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 81 VNWEDIAGVEF-AKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCGGGSCSCHH-HHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCHHHhCChHH-HHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 57788877542 2233333332222111 1 2244567899999999999764
No 129
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=62.92 E-value=4.2 Score=46.27 Aligned_cols=59 Identities=20% Similarity=0.281 Sum_probs=38.3
Q ss_pred cccccCcccCHHHHhcCCCCcHHHHHHHHHHHhcC-----------CCCCHHHHhhc-CCCHHHHHHhhcc
Q 005372 583 EYIDFLNTASREELVELKGIGQRLADYICELRQSS-----------PVKSLSDLEKI-GLSTKQVYNLFGK 641 (699)
Q Consensus 583 ~~~v~iNtA~~~eL~~lpGIG~k~A~~Ii~~R~~~-----------pf~~~~dL~~v-Gi~~~~~~~l~~~ 641 (699)
..+.+|+....++|..|||||++.+..|-++-++. .-..+.+|.+| |||+++..+|.+.
T Consensus 46 ~l~~~i~~~~~~~~~~lp~iG~~~~~~i~~~v~~g~~~~~~~~~~~~~~~~~~L~~v~GVGpk~A~~i~~~ 116 (578)
T 2w9m_A 46 ELNEETPELLAREFTGIPKVGKGIAAELSDFARSGTFAPLEAAAGQLPPGLLDLLGVRGLGPKKIRSLWLA 116 (578)
T ss_dssp SCC----------CCSSTTCCHHHHHHHHHHHHHSSCHHHHHHHHHSCHHHHHHTTSTTCCHHHHHHHHHT
T ss_pred hCchhhhhhhHhhhhhcCCCChhHHHHHHHHHcCChHHHHHHHhhhhHHHHHHHhCCCCcCHHHHHHHHHc
Confidence 34556777666669999999999999987775322 11245678889 9999999999876
No 130
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=62.20 E-value=4.2 Score=35.19 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=22.2
Q ss_pred cCHHHHhcCCCCcHHHHHHHHHHH
Q 005372 591 ASREELVELKGIGQRLADYICELR 614 (699)
Q Consensus 591 A~~~eL~~lpGIG~k~A~~Ii~~R 614 (699)
++.++|..+||||+++|++|++..
T Consensus 67 ~s~edL~~v~Gig~k~~~~l~~~g 90 (98)
T 2edu_A 67 SQVEDLERVEGITGKQMESFLKAN 90 (98)
T ss_dssp SSGGGGGGSTTCCHHHHHHHHHHH
T ss_pred CCHHHHHhCCCCCHHHHHHHHHCc
Confidence 788999999999999999999865
No 131
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=62.06 E-value=2.4 Score=42.56 Aligned_cols=21 Identities=29% Similarity=0.234 Sum_probs=17.8
Q ss_pred CCCCEEEEeeccCCCCCccee
Q 005372 112 HGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 112 ~G~N~tIfAYGqTGSGKTyTm 132 (699)
......++-||++|+|||+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHH
Confidence 556678999999999999864
No 132
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=61.58 E-value=2.2 Score=41.87 Aligned_cols=23 Identities=52% Similarity=0.873 Sum_probs=18.3
Q ss_pred hhhhcCCCCEEEEeeccCCCCCcce
Q 005372 107 IPGIFHGRNATVFAYGATGSGKTYT 131 (699)
Q Consensus 107 V~~vl~G~N~tIfAYGqTGSGKTyT 131 (699)
++.+++|.+ ++..++||||||.+
T Consensus 60 i~~~~~~~~--~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 60 IPVMLHGRE--LLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHhCCCC--EEEECCCCCcHHHH
Confidence 455677877 57789999999986
No 133
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=61.42 E-value=2.6 Score=43.71 Aligned_cols=20 Identities=35% Similarity=0.612 Sum_probs=16.5
Q ss_pred CCCEEEEeeccCCCCCccee
Q 005372 113 GRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 113 G~N~tIfAYGqTGSGKTyTm 132 (699)
+....++-||++|+|||+.+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHH
Confidence 44557889999999999865
No 134
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=60.68 E-value=2.6 Score=46.09 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=21.3
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCcceec
Q 005372 106 LIPGIFHGRNATVFAYGATGSGKTYTMQ 133 (699)
Q Consensus 106 lV~~vl~G~N~tIfAYGqTGSGKTyTm~ 133 (699)
++..++..-...+.-.|+||||||.+|.
T Consensus 158 ~L~~l~~~~ggii~I~GpnGSGKTTlL~ 185 (418)
T 1p9r_A 158 NFRRLIKRPHGIILVTGPTGSGKSTTLY 185 (418)
T ss_dssp HHHHHHTSSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 4455555556788899999999999873
No 135
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=60.63 E-value=4.6 Score=40.62 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=20.4
Q ss_pred CHHHHhcCCCCcHHHHHHHHHHH
Q 005372 592 SREELVELKGIGQRLADYICELR 614 (699)
Q Consensus 592 ~~~eL~~lpGIG~k~A~~Ii~~R 614 (699)
..++|..|||||++.|+.|+-+=
T Consensus 148 ~~~~L~~l~GIG~~TA~~ill~a 170 (232)
T 4b21_A 148 LMESLSKIKGVKRWTIEMYSIFT 170 (232)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHhCCCcCHHHHHHHHHHh
Confidence 46789999999999999998865
No 136
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=60.18 E-value=8.2 Score=31.70 Aligned_cols=46 Identities=24% Similarity=0.328 Sum_probs=36.4
Q ss_pred HHHhcCCCCcHHHHHHHHHHHhcCCCCCHH--------HHhhc-CCCHHHHHHhhcccc
Q 005372 594 EELVELKGIGQRLADYICELRQSSPVKSLS--------DLEKI-GLSTKQVYNLFGKAA 643 (699)
Q Consensus 594 ~eL~~lpGIG~k~A~~Ii~~R~~~pf~~~~--------dL~~v-Gi~~~~~~~l~~~~~ 643 (699)
+-++...||++..|+..++. +|.+++ +|..| |++...+++|+.+..
T Consensus 6 ~~f~~~lgI~e~~a~~L~~~----Gf~tve~vA~~~~~eL~~I~G~dE~~a~~l~~~A~ 60 (70)
T 1u9l_A 6 DTFTKYLDIDEDFATVLVEE----GFSTLEELAYVPMKELLEIEGLDEPTVEALRERAK 60 (70)
T ss_dssp HHHHHHHTCCHHHHHHHHHT----TCCCHHHHHHSCHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHc----CcCcHHHHHcCCHHHHhhccCCCHHHHHHHHHHHH
Confidence 45677779999999988875 677665 56667 999999999998754
No 137
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=59.94 E-value=1.5 Score=43.14 Aligned_cols=24 Identities=38% Similarity=0.508 Sum_probs=18.4
Q ss_pred hhhhcCCCCEEEEeeccCCCCCccee
Q 005372 107 IPGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 107 V~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
+..+++|.| ++..++||||||.+.
T Consensus 61 i~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 61 IIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHH
Confidence 445667877 577899999999773
No 138
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=59.60 E-value=4.4 Score=43.76 Aligned_cols=29 Identities=38% Similarity=0.564 Sum_probs=25.5
Q ss_pred cccCcccCHHHHhcCCCCcHHHHHHHHHH
Q 005372 585 IDFLNTASREELVELKGIGQRLADYICEL 613 (699)
Q Consensus 585 ~v~iNtA~~~eL~~lpGIG~k~A~~Ii~~ 613 (699)
+-+|=+|+.+||+.+.|||+++|++|-+.
T Consensus 338 Lq~Il~AS~eEL~~VeGIGe~rAr~Ireg 366 (377)
T 3c1y_A 338 LDQISKASVEDLKKVEGIGEKRARAISES 366 (377)
T ss_dssp HHHHTTCCHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHhccCccHHHHHHHHHH
Confidence 45777999999999999999999999653
No 139
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=59.44 E-value=4.9 Score=41.84 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.8
Q ss_pred CHHHHhc-CCCCcHHHHHHHHHHH
Q 005372 592 SREELVE-LKGIGQRLADYICELR 614 (699)
Q Consensus 592 ~~~eL~~-lpGIG~k~A~~Ii~~R 614 (699)
+.++|.. |||||++.|..|+-+=
T Consensus 126 ~~~~Ll~~LpGIG~kTA~~iL~~a 149 (287)
T 3n5n_X 126 TAETLQQLLPGVGRYTAGAIASIA 149 (287)
T ss_dssp SHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHh
Confidence 5899998 9999999999999765
No 140
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=59.40 E-value=5.1 Score=40.06 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=19.7
Q ss_pred HHHHhcCCCCcHHHHHHHHHHH
Q 005372 593 REELVELKGIGQRLADYICELR 614 (699)
Q Consensus 593 ~~eL~~lpGIG~k~A~~Ii~~R 614 (699)
.++|..|||||++.|+.|+-+=
T Consensus 145 ~~~L~~l~GIG~~TA~~ill~~ 166 (225)
T 2yg9_A 145 IAELVQLPGIGRWTAEMFLLFA 166 (225)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHcCCCCCHHHHHHHHHHh
Confidence 6789999999999999999764
No 141
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=58.63 E-value=2.9 Score=40.77 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=17.8
Q ss_pred hhhhcCCCCEEEEeeccCCCCCccee
Q 005372 107 IPGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 107 V~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
+..+++|.+ ++..++||||||.+.
T Consensus 56 i~~~~~~~~--~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 56 IGLALQGKD--VLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEeCCCCcHHHHH
Confidence 345567877 466789999999863
No 142
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=58.63 E-value=13 Score=39.07 Aligned_cols=205 Identities=12% Similarity=0.131 Sum_probs=106.8
Q ss_pred CceeeeeceeeCCCCCcHhHHHHhhccchhhhhc-CCCCEEEEeeccCCCCCcceeccCCCCCCchHHHHHHHHHhhhc-
Q 005372 78 RSECYQLDSFFGQEDESVSKIFYSEVNPLIPGIF-HGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMSKILSICQS- 155 (699)
Q Consensus 78 ~~~~F~FD~VF~~~~~sQ~~Vf~~~v~plV~~vl-~G~N~tIfAYGqTGSGKTyTm~G~~~~~GIipral~~LF~~~~~- 155 (699)
..+.|.|++|+..+.-+-.+++....+..++-++ .+.|+.||..|+.- .. ..-..|+..+..
T Consensus 90 ~~~~y~FnRiIp~~~~~e~~~l~qE~q~y~DmcL~~~~NfslIsis~~~------------w~----~Lr~~lL~fi~~k 153 (333)
T 4etp_B 90 SEHVYKFNRVIPHLKVSEDCFFTQEYSVYHDMALNQKKNFNLISLSTTP------------HG----SLRESLIKFLAEK 153 (333)
T ss_dssp CCCEEECSEEEETTTCCHHHHHHHTTHHHHHHHHHTTCCEEEEEEESSC------------CC----HHHHHHHHHHHST
T ss_pred CcceEEEeeeechhhcchHHHHHHHHHHHHHHHHccCCCeeEEEecCCC------------cH----HHHHHHHHHHHhc
Confidence 3468999999977655567888889999999999 89999999998652 11 222333333322
Q ss_pred -----CCceeEEEEEEEecce-eeeccCCCc----cceeeeecCCCCeEecCCEEEEeCChhHHHHHHHHHHhcCccccc
Q 005372 156 -----TGSTAEISYYEVYMDR-CYDLLEVKT----KEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHT 225 (699)
Q Consensus 156 -----~~~~v~vS~~EIYnE~-v~DLL~~~~----~~l~i~ed~~~~v~v~gLsev~V~S~ee~~~ll~~g~~~R~~~sT 225 (699)
..+.+.+-|+.+-++. ..|||.+.. .++.+.-+. ..+.+ +=..+.+.+..+.+.++.. ..+
T Consensus 154 ~~~Y~~~y~i~lQ~V~Lse~~~S~DlL~~~~~~~~~~I~lkiee-~sI~l-dS~~i~i~~~~~~l~~~~k-------l~~ 224 (333)
T 4etp_B 154 DTIYQKQYVITLQFVFLSDDEFSQDMLLDYSHNDKDSIKLKFEK-HSISL-DSKLVIIENGLEDLPLNFS-------ADE 224 (333)
T ss_dssp TCHHHHHEEEEEEEEECCSSSCCEESSCC----------CEEET-TEEEC-CSCCEEESSGGGGSCTTSS-------CCC
T ss_pred ccccccceEEEEEEEEEcCCCchhhhhccccccCCCCceEEeec-ceEee-cceEEEeccccccchhhhc-------ccc
Confidence 3457778887776665 689998652 222221111 11111 2234555554432222110 000
Q ss_pred CCCCCCCCceEEEEEEEEEeecC--CCCceEEEEEEEEEcCCCcccccchhhHHHHHhhhhhHHHHHHHHHHhcCCCCCC
Q 005372 226 GLNDVSSRSHGVLVISVSTLLGD--DSKAALTGKLNLIDLADNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRV 303 (699)
Q Consensus 226 ~~N~~SSRSH~If~I~V~~~~~~--~~~~~~~skL~fVDLAGsert~~~g~rl~E~~~INkSL~aLg~VI~aL~~~~~~I 303 (699)
.-+. -...-.|+.+.+.....+ +......-..+||.+-+.. .+..|.++|..=
T Consensus 225 ~~~~-~~~GI~IlKfqf~~~~~~~~~n~~~~~~~fYFiEi~~~~-----------------ti~~l~~~i~~~------- 279 (333)
T 4etp_B 225 HPNL-PHSGMGIIKVQFFPRDSKSDGNNDPVPVDFYFIELNNLK-----------------SIEQFDKSIFKK------- 279 (333)
T ss_dssp ---------CEEEEEEEEECC--------CCCEEEEEEEECSHH-----------------HHHHHHSCC----------
T ss_pred CCCC-CCCCceEEEEEEEecCcccccccCCcceeEEEEEecChh-----------------HHHHHHhhcCcc-------
Confidence 0000 112334666666654332 1111223468888884322 122333333211
Q ss_pred CCCCChhhhhcccccCCCceeEEEEEeCCC
Q 005372 304 PYRESKLTRILQDSLGGTSHALMVACLNPG 333 (699)
Q Consensus 304 PYRdSKLTrLLqdsLgGnskt~mI~~VSP~ 333 (699)
-.-.|+++-+|+--| -.++.++|.++.-+
T Consensus 280 ~~~~spi~~ilkkLl-~~TKS~flfnl~~~ 308 (333)
T 4etp_B 280 ESAETPIALVLKKLI-SDTKSFFLLNLNDS 308 (333)
T ss_dssp -CCCCHHHHHHHHHH-HHSBCEEEEEECCS
T ss_pred cccCCCHHHHHHHHH-hhCcceEEEEcCCc
Confidence 133577787777543 45788999999754
No 143
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=58.40 E-value=3.1 Score=48.28 Aligned_cols=44 Identities=30% Similarity=0.311 Sum_probs=30.6
Q ss_pred cCcccCHHHHhcCCCCcHHHHHHHHHHHhcC-CCCCHHHHhhcCC
Q 005372 587 FLNTASREELVELKGIGQRLADYICELRQSS-PVKSLSDLEKIGL 630 (699)
Q Consensus 587 ~iNtA~~~eL~~lpGIG~k~A~~Ii~~R~~~-pf~~~~dL~~vGi 630 (699)
.|-.|+.++|..++|||+++|+.|+++-... --.-++.|...||
T Consensus 532 ~l~~As~eeL~~I~GIG~~~A~sI~~ff~~~~~~~~i~~L~~~gv 576 (667)
T 1dgs_A 532 RLLEASLEELIEVEEVGELTARAILETLKDPAFRDLVRRLKEAGV 576 (667)
T ss_dssp HHTTCCHHHHHTSTTCCHHHHHHHHHHHHCHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHhccCcCHHHHHHHHHHHhhHHHHHHHHHHHHcCC
Confidence 3567899999999999999999999875321 1223444444454
No 144
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=58.05 E-value=5.3 Score=42.65 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=23.4
Q ss_pred cCHHHHhcCCCCcHHHHHHHHHHHhcCC
Q 005372 591 ASREELVELKGIGQRLADYICELRQSSP 618 (699)
Q Consensus 591 A~~~eL~~lpGIG~k~A~~Ii~~R~~~p 618 (699)
...++|..|||||++.|..|+-+=-..|
T Consensus 115 ~~~~~L~~l~GIG~~tA~~il~~~~~~~ 142 (369)
T 3fsp_A 115 DDPDEFSRLKGVGPYTVGAVLSLAYGVP 142 (369)
T ss_dssp CSHHHHHTSTTCCHHHHHHHHHHHHCCC
T ss_pred hHHHHHhcCCCcCHHHHHHHHHHHCCCC
Confidence 4689999999999999999998753333
No 145
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=57.98 E-value=5.5 Score=39.91 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.8
Q ss_pred HHHHhcCCCCcHHHHHHHHHHH
Q 005372 593 REELVELKGIGQRLADYICELR 614 (699)
Q Consensus 593 ~~eL~~lpGIG~k~A~~Ii~~R 614 (699)
.++|..|||||++.|+.|+-+-
T Consensus 138 ~~~L~~l~GIG~~TA~~ill~~ 159 (228)
T 3s6i_A 138 IERLTQIKGIGRWTVEMLLIFS 159 (228)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHT
T ss_pred HHHHHhCCCcCHHHHHHHHHHh
Confidence 6789999999999999999764
No 146
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=57.97 E-value=5.3 Score=41.12 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.7
Q ss_pred HHHHhcCCCCcHHHHHHHHHHH
Q 005372 593 REELVELKGIGQRLADYICELR 614 (699)
Q Consensus 593 ~~eL~~lpGIG~k~A~~Ii~~R 614 (699)
.++|.+|||||++.|+.|+-+=
T Consensus 206 ~~~L~~lpGIG~~TA~~ill~~ 227 (282)
T 1mpg_A 206 MKTLQTFPGIGRWTANYFALRG 227 (282)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHhcCCCcCHHHHHHHHHHh
Confidence 6889999999999999998754
No 147
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=57.67 E-value=2.7 Score=43.87 Aligned_cols=50 Identities=22% Similarity=0.479 Sum_probs=29.5
Q ss_pred eeeceeeCCCCCcHhHHHHhhccchh-hhhcCCC---CEEEEeeccCCCCCccee
Q 005372 82 YQLDSFFGQEDESVSKIFYSEVNPLI-PGIFHGR---NATVFAYGATGSGKTYTM 132 (699)
Q Consensus 82 F~FD~VF~~~~~sQ~~Vf~~~v~plV-~~vl~G~---N~tIfAYGqTGSGKTyTm 132 (699)
..||.+.+.+. .-+.+.+.+..|+- ..++.|. ...|+-||++|+|||+..
T Consensus 9 ~~~~di~G~~~-~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGLEG-AKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSCHH-HHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCHHH-HHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 57888887653 22334333333332 1233432 246888999999999764
No 148
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=57.61 E-value=4.9 Score=41.73 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=20.1
Q ss_pred CHHHHhcCCCCcHHHHHHHHHHH
Q 005372 592 SREELVELKGIGQRLADYICELR 614 (699)
Q Consensus 592 ~~~eL~~lpGIG~k~A~~Ii~~R 614 (699)
..++|.+|||||++.|+.|+-+=
T Consensus 209 ~~~~L~~lpGIG~~TA~~ill~~ 231 (290)
T 3i0w_A 209 CHEELKKFMGVGPQVADCIMLFS 231 (290)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCcCHHHHHHHHHHh
Confidence 46789999999999999998754
No 149
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=56.86 E-value=2.9 Score=44.68 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=21.2
Q ss_pred chhhhhcCCCCEEEEeeccCCCCCcceec
Q 005372 105 PLIPGIFHGRNATVFAYGATGSGKTYTMQ 133 (699)
Q Consensus 105 plV~~vl~G~N~tIfAYGqTGSGKTyTm~ 133 (699)
+.+.+++.--...+.-.|+||||||.+|.
T Consensus 113 ~~l~~l~~~~~g~i~I~GptGSGKTTlL~ 141 (356)
T 3jvv_A 113 EVFKRVSDVPRGLVLVTGPTGSGKSTTLA 141 (356)
T ss_dssp HHHHHHHHCSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHhCCCCEEEEECCCCCCHHHHHH
Confidence 34455554455678889999999999873
No 150
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=56.83 E-value=5.2 Score=38.09 Aligned_cols=55 Identities=18% Similarity=0.155 Sum_probs=42.7
Q ss_pred cccCcccCHHHHhc-CCCCc--HHHHHHHHHHHhcC-CCCCHHHHhhc-CCCHHHHHHhhc
Q 005372 585 IDFLNTASREELVE-LKGIG--QRLADYICELRQSS-PVKSLSDLEKI-GLSTKQVYNLFG 640 (699)
Q Consensus 585 ~v~iNtA~~~eL~~-lpGIG--~k~A~~Ii~~R~~~-pf~~~~dL~~v-Gi~~~~~~~l~~ 640 (699)
+-.+-.|+.++|.. +.|+| ..+|++|++.=+.. | .+.++|.++ |||+.+...++-
T Consensus 63 ~~~la~a~~~el~~~i~~lG~y~~KAk~i~~~a~~~vp-~~~~~L~~LpGVG~yTAdav~~ 122 (161)
T 4e9f_A 63 AEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLT-KQWKYPIELHGIGKYGNDSYRI 122 (161)
T ss_dssp HHHHTTSCHHHHHHHHGGGSCHHHHHHHHHHHHHHHHH-SCCSSGGGSTTCCHHHHHHHHH
T ss_pred HHHHhccChHhHHhHhhhcCCHHHHHHHHHHHhCCcCC-CChhhhhcCCCchHHHHHHHHH
Confidence 34566889988855 78898 67999999865544 4 467899999 999999988754
No 151
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.67 E-value=3 Score=45.97 Aligned_cols=50 Identities=22% Similarity=0.377 Sum_probs=32.7
Q ss_pred eeeceeeCCCCCcHhHHHHhhccchhh-hhcC--C--CCEEEEeeccCCCCCccee
Q 005372 82 YQLDSFFGQEDESVSKIFYSEVNPLIP-GIFH--G--RNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 82 F~FD~VF~~~~~sQ~~Vf~~~v~plV~-~vl~--G--~N~tIfAYGqTGSGKTyTm 132 (699)
-+||.|-+.+. .-+++.+.++.|+.. ..+. | .--.|+-||+.|+|||++.
T Consensus 178 ~t~~digGl~~-~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 178 ETYSDVGGLDK-QIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CCGGGSCSCHH-HHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CChHhcCcHHH-HHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHH
Confidence 57888888753 335566666666542 2332 2 2346888999999999653
No 152
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=56.64 E-value=4.8 Score=42.97 Aligned_cols=43 Identities=21% Similarity=0.441 Sum_probs=37.5
Q ss_pred ccCcccCHHHHhcC------CCCcHHHHHHHHHHHhcCCCCCHHHHhhc
Q 005372 586 DFLNTASREELVEL------KGIGQRLADYICELRQSSPVKSLSDLEKI 628 (699)
Q Consensus 586 v~iNtA~~~eL~~l------pGIG~k~A~~Ii~~R~~~pf~~~~dL~~v 628 (699)
..||+++.++|..| ---.+++|.+|++.|+..||.+-.||.++
T Consensus 172 dvvn~~~e~eLa~Il~~YGEEr~a~rIA~aIv~~R~~~pi~tT~~La~i 220 (347)
T 3tka_A 172 EWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKELAEV 220 (347)
T ss_dssp HHHHHCCHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHSCCCBHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHhcCcchHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 57899999999876 23678999999999999999999999874
No 153
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=56.59 E-value=3.1 Score=40.05 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=17.6
Q ss_pred hhhhcCCCCEEEEeeccCCCCCccee
Q 005372 107 IPGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 107 V~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
+..+++|.+ ++..++||||||.+.
T Consensus 45 i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 45 IPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCchhhhh
Confidence 345566777 566789999999764
No 154
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=56.32 E-value=3.1 Score=40.34 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=18.1
Q ss_pred hhhhcCCCCEEEEeeccCCCCCccee
Q 005372 107 IPGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 107 V~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
+..+++|.|+ +..++||||||.+.
T Consensus 51 i~~~~~~~~~--l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 51 WPIILQGIDL--IVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHhCCCCE--EEECCCCChHHHHH
Confidence 3456678775 66789999999763
No 155
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=55.48 E-value=3.9 Score=42.51 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=26.6
Q ss_pred eeeceeeCCCCCcHhHHHHhhccchhhhhcCCC-CE--EEEeeccCCCCCccee
Q 005372 82 YQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGR-NA--TVFAYGATGSGKTYTM 132 (699)
Q Consensus 82 F~FD~VF~~~~~sQ~~Vf~~~v~plV~~vl~G~-N~--tIfAYGqTGSGKTyTm 132 (699)
|.++.+++.+. ... .+...+...+.|. .. .++-||++|+|||+++
T Consensus 14 ~~p~~l~gr~~-----~~~-~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 14 YVPKRLPHREQ-----QLQ-QLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp CCCSCCTTCHH-----HHH-HHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred cCCCCCCChHH-----HHH-HHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 56666665431 222 2233444444443 24 6888999999999865
No 156
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=55.36 E-value=6.3 Score=40.92 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.7
Q ss_pred CHHHHhcCCCCcHHHHHHHHHH
Q 005372 592 SREELVELKGIGQRLADYICEL 613 (699)
Q Consensus 592 ~~~eL~~lpGIG~k~A~~Ii~~ 613 (699)
..++|.+|||||++.|+.|+-+
T Consensus 208 ~~~~L~~lpGIG~~TA~~ill~ 229 (295)
T 2jhn_A 208 AYEYLTSFKGIGRWTAELVLSI 229 (295)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHHH
Confidence 4688999999999999999875
No 157
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=55.15 E-value=1.7 Score=41.27 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=16.5
Q ss_pred hhcCCCCEEEEeeccCCCCCccee
Q 005372 109 GIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 109 ~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
.+++|.+ ++..++||+|||.+.
T Consensus 44 ~~~~~~~--~li~~~tGsGKT~~~ 65 (216)
T 3b6e_A 44 PALEGKN--IIICLPTGSGKTRVA 65 (216)
T ss_dssp HHHTTCC--EEEECSCHHHHHHHH
T ss_pred HHhcCCC--EEEEcCCCCCHHHHH
Confidence 3455665 466899999999875
No 158
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=55.11 E-value=2.8 Score=41.51 Aligned_cols=15 Identities=40% Similarity=0.530 Sum_probs=13.8
Q ss_pred EEeeccCCCCCccee
Q 005372 118 VFAYGATGSGKTYTM 132 (699)
Q Consensus 118 IfAYGqTGSGKTyTm 132 (699)
++-||++|+|||+.+
T Consensus 52 ~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLA 66 (254)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 889999999999875
No 159
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=54.88 E-value=2.3 Score=42.68 Aligned_cols=24 Identities=42% Similarity=0.645 Sum_probs=18.3
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCcce
Q 005372 106 LIPGIFHGRNATVFAYGATGSGKTYT 131 (699)
Q Consensus 106 lV~~vl~G~N~tIfAYGqTGSGKTyT 131 (699)
.+..++.|.| ++..++||||||.+
T Consensus 84 ~i~~~~~~~~--~lv~a~TGsGKT~~ 107 (262)
T 3ly5_A 84 SIRPLLEGRD--LLAAAKTGSGKTLA 107 (262)
T ss_dssp HHHHHHHTCC--CEECCCTTSCHHHH
T ss_pred HHHHHhCCCc--EEEEccCCCCchHH
Confidence 3445567776 57789999999976
No 160
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=54.45 E-value=3.7 Score=40.55 Aligned_cols=24 Identities=46% Similarity=0.757 Sum_probs=17.4
Q ss_pred hhhhcCCCCEEEEeeccCCCCCccee
Q 005372 107 IPGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 107 V~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
++.+++|.| ++..++||||||.+.
T Consensus 54 i~~i~~~~~--~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 54 IPAILEHRD--IMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 345567777 466689999999763
No 161
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=54.35 E-value=4.2 Score=41.99 Aligned_cols=20 Identities=40% Similarity=0.767 Sum_probs=16.1
Q ss_pred CCCEEEEeeccCCCCCccee
Q 005372 113 GRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 113 G~N~tIfAYGqTGSGKTyTm 132 (699)
+....++-||++|+|||+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 34557888999999999865
No 162
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=54.32 E-value=4.4 Score=41.18 Aligned_cols=19 Identities=37% Similarity=0.574 Sum_probs=15.6
Q ss_pred CEEEEeeccCCCCCcceec
Q 005372 115 NATVFAYGATGSGKTYTMQ 133 (699)
Q Consensus 115 N~tIfAYGqTGSGKTyTm~ 133 (699)
...+.-.|++|||||.+|.
T Consensus 25 g~~v~i~Gp~GsGKSTll~ 43 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIA 43 (261)
T ss_dssp SEEEEEECSTTCSHHHHHH
T ss_pred CCEEEEECCCCccHHHHHH
Confidence 4567788999999999873
No 163
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=54.27 E-value=3.1 Score=37.79 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=14.6
Q ss_pred EEEEeeccCCCCCcceec
Q 005372 116 ATVFAYGATGSGKTYTMQ 133 (699)
Q Consensus 116 ~tIfAYGqTGSGKTyTm~ 133 (699)
..|+-||++|+|||+...
T Consensus 28 ~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp SCEEEEEETTCCHHHHHG
T ss_pred CcEEEECCCCccHHHHHH
Confidence 347779999999998754
No 164
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=54.26 E-value=3.5 Score=41.79 Aligned_cols=20 Identities=25% Similarity=0.265 Sum_probs=16.0
Q ss_pred CCCEEEEeeccCCCCCccee
Q 005372 113 GRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 113 G~N~tIfAYGqTGSGKTyTm 132 (699)
.....|+-||++|+|||+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 33446899999999999864
No 165
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=54.12 E-value=6.1 Score=39.46 Aligned_cols=23 Identities=43% Similarity=0.417 Sum_probs=20.0
Q ss_pred cCHHHHh-cCCCCcHHHHHHHHHH
Q 005372 591 ASREELV-ELKGIGQRLADYICEL 613 (699)
Q Consensus 591 A~~~eL~-~lpGIG~k~A~~Ii~~ 613 (699)
...++|. .|||||++.|.-|+-+
T Consensus 126 ~~r~~L~~~l~GVG~kTA~~vL~~ 149 (219)
T 3n0u_A 126 QSREFLVRNAKGIGWKEASHFLRN 149 (219)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHH
Confidence 3467899 9999999999999975
No 166
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=53.61 E-value=3.6 Score=37.34 Aligned_cols=19 Identities=32% Similarity=0.660 Sum_probs=15.0
Q ss_pred CCEEEEeeccCCCCCccee
Q 005372 114 RNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 114 ~N~tIfAYGqTGSGKTyTm 132 (699)
.+..|+-||++|+|||+..
T Consensus 23 ~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp CCSCEEEESSTTSSHHHHH
T ss_pred CCCCEEEECCCCCCHHHHH
Confidence 3455788999999999753
No 167
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=53.29 E-value=4 Score=42.75 Aligned_cols=25 Identities=36% Similarity=0.476 Sum_probs=19.3
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCccee
Q 005372 106 LIPGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 106 lV~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
.+..+++|.+ ++..++||||||.+.
T Consensus 70 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 70 AILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HhHHHhCCCC--EEEECCCCCcccHHH
Confidence 3455677888 577899999999873
No 168
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=52.37 E-value=6.3 Score=40.99 Aligned_cols=43 Identities=26% Similarity=0.430 Sum_probs=36.7
Q ss_pred ccCcccCHHHHhcC------CCCcHHHHHHHHHHHhcCCCCCHHHHhhc
Q 005372 586 DFLNTASREELVEL------KGIGQRLADYICELRQSSPVKSLSDLEKI 628 (699)
Q Consensus 586 v~iNtA~~~eL~~l------pGIG~k~A~~Ii~~R~~~pf~~~~dL~~v 628 (699)
..||+++.++|..| ---..++|.+|+++|+..||.+-.||.++
T Consensus 132 ~~vn~~~~~~L~~i~~~yGee~~a~~iA~~Iv~~R~~~pi~tt~~L~~i 180 (285)
T 1wg8_A 132 EVVNRLPLEALARLLRELGEEPQAYRIARAIVAAREKAPIETTTQLAEI 180 (285)
T ss_dssp HHHHHSCHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHSCCCBHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHhcCHhHHHHHHHHHHHHhccCCCCCHHHHHHH
Confidence 56899999999875 22368999999999999999999999875
No 169
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=52.27 E-value=3 Score=42.40 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=0.0
Q ss_pred cccCcccCHHHHhcCCCCcHHHHHHHHHH
Q 005372 585 IDFLNTASREELVELKGIGQRLADYICEL 613 (699)
Q Consensus 585 ~v~iNtA~~~eL~~lpGIG~k~A~~Ii~~ 613 (699)
.-.|-.|+.++|..+||||+++|++|+++
T Consensus 39 ve~L~~a~~~eL~~v~GIG~ktAe~I~~~ 67 (241)
T 1vq8_Y 39 VEDVRGADQSALADVSGIGNALAARIKAD 67 (241)
T ss_dssp -----------------------------
T ss_pred HHHHHhCCHHHHHhccCCCHHHHHHHHHH
Confidence 34566899999999999999999999764
No 170
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=51.86 E-value=4.3 Score=39.57 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=16.7
Q ss_pred hhhcCCCCEEEEeeccCCCCCcce
Q 005372 108 PGIFHGRNATVFAYGATGSGKTYT 131 (699)
Q Consensus 108 ~~vl~G~N~tIfAYGqTGSGKTyT 131 (699)
..+++|.|+ +..++||||||.+
T Consensus 56 ~~~~~~~~~--l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 56 PLGRCGLDL--IVQAKSGTGKTCV 77 (230)
T ss_dssp HHHHTTCCE--EEECCTTSSHHHH
T ss_pred HHHhCCCCE--EEECCCCCcHHHH
Confidence 345678774 5678999999976
No 171
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=51.86 E-value=3.9 Score=42.10 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=19.3
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCccee
Q 005372 106 LIPGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 106 lV~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
.+..++.|..--+++.++||||||...
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 345667773334688899999999763
No 172
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=51.49 E-value=3.8 Score=43.61 Aligned_cols=51 Identities=20% Similarity=0.354 Sum_probs=28.7
Q ss_pred eeeeceeeCCCCCcHhHHHHhhccchhh-hhcC---CCCEEEEeeccCCCCCccee
Q 005372 81 CYQLDSFFGQEDESVSKIFYSEVNPLIP-GIFH---GRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 81 ~F~FD~VF~~~~~sQ~~Vf~~~v~plV~-~vl~---G~N~tIfAYGqTGSGKTyTm 132 (699)
.+.||.+.+.+. .-+.+......++.. .++. .-...|+-||++|+|||+..
T Consensus 111 ~~~~~~iiG~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 111 AVKFDDIAGQDL-AKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCGGGSCSCHH-HHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCChHHhCCHHH-HHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 467888887542 223333333222221 1112 22357899999999999864
No 173
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=51.20 E-value=3.5 Score=40.56 Aligned_cols=25 Identities=36% Similarity=0.507 Sum_probs=17.6
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCccee
Q 005372 106 LIPGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 106 lV~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
++..+.+|.+ ++..|+||||||..+
T Consensus 69 ~i~~i~~g~~--~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 69 ILEAISQNSV--VIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHCSE--EEEECCTTSSHHHHH
T ss_pred HHHHHhcCCE--EEEEeCCCCCcHHhH
Confidence 4445556654 567899999999754
No 174
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=51.19 E-value=7.8 Score=41.53 Aligned_cols=24 Identities=33% Similarity=0.603 Sum_probs=20.6
Q ss_pred cCHHHHhcCCCCcHHHHHHHHHHH
Q 005372 591 ASREELVELKGIGQRLADYICELR 614 (699)
Q Consensus 591 A~~~eL~~lpGIG~k~A~~Ii~~R 614 (699)
...++|..|||||++.|+.|+-+=
T Consensus 250 ~~~~~L~~LpGIGp~TA~~ill~a 273 (360)
T 2xhi_A 250 EAHKALCILPGVGTCVADKICLMA 273 (360)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHh
Confidence 346789999999999999998764
No 175
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=51.13 E-value=4.5 Score=40.23 Aligned_cols=24 Identities=42% Similarity=0.695 Sum_probs=17.5
Q ss_pred hhhhcCCCCEEEEeeccCCCCCccee
Q 005372 107 IPGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 107 V~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
+..+++|.+ ++..++||||||.+.
T Consensus 74 i~~i~~~~~--~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 74 IPLALQGRD--IIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEcCCCCCchhHh
Confidence 445567776 456679999999863
No 176
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=50.86 E-value=4.1 Score=43.06 Aligned_cols=51 Identities=24% Similarity=0.511 Sum_probs=28.9
Q ss_pred eeeeceeeCCCCCcHhHHHHhhccchh-hhhcCCC---CEEEEeeccCCCCCccee
Q 005372 81 CYQLDSFFGQEDESVSKIFYSEVNPLI-PGIFHGR---NATVFAYGATGSGKTYTM 132 (699)
Q Consensus 81 ~F~FD~VF~~~~~sQ~~Vf~~~v~plV-~~vl~G~---N~tIfAYGqTGSGKTyTm 132 (699)
...||.+.+.+. .-+.+...+..|+- ..++.+. ...|+-||++|+|||+..
T Consensus 47 ~~~~~di~G~~~-~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 47 NVKWEDVAGLEG-AKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCGGGSCCGGG-HHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCHHHhCCHHH-HHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 367888887653 22334433333321 1222221 235788999999999764
No 177
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=50.15 E-value=4.1 Score=40.36 Aligned_cols=50 Identities=20% Similarity=0.219 Sum_probs=27.6
Q ss_pred eeeeceeeCCCCCcHhHHHHhhccchhh-hhcC----CCCEEEEeeccCCCCCccee
Q 005372 81 CYQLDSFFGQEDESVSKIFYSEVNPLIP-GIFH----GRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 81 ~F~FD~VF~~~~~sQ~~Vf~~~v~plV~-~vl~----G~N~tIfAYGqTGSGKTyTm 132 (699)
.+.||.+.+.+. ..+.+.. .+..+.. ..+. .....|+-||++|+|||+.+
T Consensus 8 ~~~~~~i~G~~~-~~~~l~~-~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDE-AKEEVAE-LVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHH-HHHHTHH-HHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHH-HHHHHHH-HHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHH
Confidence 368888888643 2222222 2222111 1111 12345899999999999865
No 178
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=50.12 E-value=3.9 Score=40.21 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=17.3
Q ss_pred hhhhcCCCCEEEEeeccCCCCCccee
Q 005372 107 IPGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 107 V~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
+..+++|.++ +..++||||||.+.
T Consensus 60 i~~~~~g~~~--l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 60 WPVALSGLDM--VGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHHTCCE--EEEECTTSCHHHHH
T ss_pred HHHHhCCCCE--EEECCCcCHHHHHH
Confidence 3445678775 55679999999873
No 179
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=49.36 E-value=7.4 Score=42.40 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=21.0
Q ss_pred cchhhhhcCCCCEEEEeeccCCCCCcce
Q 005372 104 NPLIPGIFHGRNATVFAYGATGSGKTYT 131 (699)
Q Consensus 104 ~plV~~vl~G~N~tIfAYGqTGSGKTyT 131 (699)
+.++..+++|.+. ++..|+||||||..
T Consensus 9 q~~i~~~l~~~~~-~lv~a~TGsGKT~~ 35 (451)
T 2jlq_A 9 YEVDEDIFRKKRL-TIMDLHPGAGKTKR 35 (451)
T ss_dssp CCCCGGGGSTTCE-EEECCCTTSSCCTT
T ss_pred HHHHHHHHhcCCe-EEEECCCCCCHhhH
Confidence 3456778888775 45679999999986
No 180
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=49.17 E-value=13 Score=30.47 Aligned_cols=29 Identities=14% Similarity=0.288 Sum_probs=24.9
Q ss_pred cccCcccCHHHHhcCCCCcHHHHHHHHHH
Q 005372 585 IDFLNTASREELVELKGIGQRLADYICEL 613 (699)
Q Consensus 585 ~v~iNtA~~~eL~~lpGIG~k~A~~Ii~~ 613 (699)
.-.|=.++.++|..++||++..|++||..
T Consensus 31 vedlA~~~~~eL~~i~gise~kA~~ii~a 59 (70)
T 1wcn_A 31 LEDLAEQGIDDLADIEGLTDEKAGALIMA 59 (70)
T ss_dssp HHHHHTSCHHHHHTSSSCCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHccCCCHHHHHHHHHH
Confidence 34556789999999999999999999864
No 181
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=49.00 E-value=5.6 Score=42.51 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=20.5
Q ss_pred cchhhhhcCCCCEEEEeeccCCCCCccee
Q 005372 104 NPLIPGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 104 ~plV~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
.+++..+.-.....+.-.|+||||||.+|
T Consensus 125 ~~~l~~l~~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 125 PDKVLELCHRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp CSSHHHHTTSSSEEEEEECSSSSSHHHHH
T ss_pred CHHHHHHhhcCCCEEEEECCCCCCHHHHH
Confidence 34455443334567888999999999987
No 182
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.90 E-value=8.5 Score=42.23 Aligned_cols=75 Identities=21% Similarity=0.361 Sum_probs=46.7
Q ss_pred eeeceeeCCCCCcHhHHHHhhccchhhh-hcC--CC--CEEEEeeccCCCCCcceec--------------cC---CCCC
Q 005372 82 YQLDSFFGQEDESVSKIFYSEVNPLIPG-IFH--GR--NATVFAYGATGSGKTYTMQ--------------GS---EERP 139 (699)
Q Consensus 82 F~FD~VF~~~~~sQ~~Vf~~~v~plV~~-vl~--G~--N~tIfAYGqTGSGKTyTm~--------------G~---~~~~ 139 (699)
-+||.|-|-+. .-+++.+.+..|+... .+. |. .-.|+-||+.|+|||+... |+ ....
T Consensus 169 v~~~digGl~~-~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~ 247 (428)
T 4b4t_K 169 VTYADVGGLDM-QKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYL 247 (428)
T ss_dssp CCGGGSCSCHH-HHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSC
T ss_pred CCHHHhccHHH-HHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhcccc
Confidence 57888887653 3344555444444321 222 32 3458999999999997652 11 2345
Q ss_pred CchHHHHHHHHHhhhcCC
Q 005372 140 GLMPLAMSKILSICQSTG 157 (699)
Q Consensus 140 GIipral~~LF~~~~~~~ 157 (699)
|--.+.++++|.......
T Consensus 248 Ge~e~~ir~lF~~A~~~a 265 (428)
T 4b4t_K 248 GEGPRMVRDVFRLARENA 265 (428)
T ss_dssp SHHHHHHHHHHHHHHHTC
T ss_pred chhHHHHHHHHHHHHHcC
Confidence 777888999998776543
No 183
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=48.61 E-value=5.3 Score=41.18 Aligned_cols=28 Identities=21% Similarity=0.421 Sum_probs=21.6
Q ss_pred chhhhhcCCC---CEEEEeeccCCCCCccee
Q 005372 105 PLIPGIFHGR---NATVFAYGATGSGKTYTM 132 (699)
Q Consensus 105 plV~~vl~G~---N~tIfAYGqTGSGKTyTm 132 (699)
..+..+++|. --||+-||+.|+|||+..
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 3466777776 347999999999999764
No 184
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=48.22 E-value=4.2 Score=40.93 Aligned_cols=18 Identities=33% Similarity=0.486 Sum_probs=14.9
Q ss_pred CEEEEeeccCCCCCccee
Q 005372 115 NATVFAYGATGSGKTYTM 132 (699)
Q Consensus 115 N~tIfAYGqTGSGKTyTm 132 (699)
...++-||++|+|||+..
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 346788999999999865
No 185
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=48.07 E-value=5.5 Score=43.23 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=20.1
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCcce
Q 005372 106 LIPGIFHGRNATVFAYGATGSGKTYT 131 (699)
Q Consensus 106 lV~~vl~G~N~tIfAYGqTGSGKTyT 131 (699)
.+..++.|.+..++..|+||||||..
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 34556667566788999999999976
No 186
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=47.58 E-value=9.1 Score=39.24 Aligned_cols=36 Identities=25% Similarity=0.254 Sum_probs=22.1
Q ss_pred HHHHhhccchhhhhcCC-CCEEEEeeccCCCCCccee
Q 005372 97 KIFYSEVNPLIPGIFHG-RNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 97 ~Vf~~~v~plV~~vl~G-~N~tIfAYGqTGSGKTyTm 132 (699)
.+|+..+..++.....+ ....|+..|++|||||+..
T Consensus 14 ~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 14 NRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp HHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 34554444444333222 2357889999999999753
No 187
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=47.52 E-value=4.4 Score=40.87 Aligned_cols=15 Identities=40% Similarity=0.530 Sum_probs=13.8
Q ss_pred EEeeccCCCCCccee
Q 005372 118 VFAYGATGSGKTYTM 132 (699)
Q Consensus 118 IfAYGqTGSGKTyTm 132 (699)
++-||++|+|||+.+
T Consensus 76 vll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLA 90 (278)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCcChHHHHH
Confidence 889999999999875
No 188
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=47.29 E-value=4.8 Score=42.37 Aligned_cols=24 Identities=46% Similarity=0.703 Sum_probs=18.2
Q ss_pred hhhhcCCCCEEEEeeccCCCCCccee
Q 005372 107 IPGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 107 V~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
+..+++|.+ ++..++||||||.+.
T Consensus 68 i~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 68 IKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCCchHHH
Confidence 445667877 567789999999764
No 189
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=47.17 E-value=3.5 Score=42.52 Aligned_cols=44 Identities=27% Similarity=0.374 Sum_probs=26.4
Q ss_pred eeceeeCCCCCcHhHHHHhhccchhhhhc--CCCCEEEEeeccCCCCCccee
Q 005372 83 QLDSFFGQEDESVSKIFYSEVNPLIPGIF--HGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 83 ~FD~VF~~~~~sQ~~Vf~~~v~plV~~vl--~G~N~tIfAYGqTGSGKTyTm 132 (699)
.||.+.+.+. +.. .+..++..+. .+....|+-||++|+|||+..
T Consensus 27 ~~~~iiG~~~-----~~~-~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIGQES-----IKK-NLNVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCSCHH-----HHH-HHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCChHH-----HHH-HHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 5777776432 222 2333444432 233456899999999999754
No 190
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=47.16 E-value=4.9 Score=37.94 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=14.6
Q ss_pred EEEEeeccCCCCCccee
Q 005372 116 ATVFAYGATGSGKTYTM 132 (699)
Q Consensus 116 ~tIfAYGqTGSGKTyTm 132 (699)
..++-||++|+|||+.+
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999865
No 191
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=46.68 E-value=3 Score=40.21 Aligned_cols=22 Identities=36% Similarity=0.661 Sum_probs=16.6
Q ss_pred hhhcCCCCEEEEeeccCCCCCcce
Q 005372 108 PGIFHGRNATVFAYGATGSGKTYT 131 (699)
Q Consensus 108 ~~vl~G~N~tIfAYGqTGSGKTyT 131 (699)
+.+++|.++ +..++||||||.+
T Consensus 36 ~~~~~~~~~--lv~a~TGsGKT~~ 57 (219)
T 1q0u_A 36 PGALRGESM--VGQSQTGTGKTHA 57 (219)
T ss_dssp HHHHHTCCE--EEECCSSHHHHHH
T ss_pred HHHhCCCCE--EEECCCCChHHHH
Confidence 445567664 5678999999986
No 192
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=46.64 E-value=4.7 Score=44.06 Aligned_cols=51 Identities=20% Similarity=0.360 Sum_probs=28.8
Q ss_pred eeeeceeeCCCCCcHhHHHHhhccchhh-hhcCC---CCEEEEeeccCCCCCccee
Q 005372 81 CYQLDSFFGQEDESVSKIFYSEVNPLIP-GIFHG---RNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 81 ~F~FD~VF~~~~~sQ~~Vf~~~v~plV~-~vl~G---~N~tIfAYGqTGSGKTyTm 132 (699)
...||.+.+.+. .-+.+...+..|+-. .++.| ....|+-||++|+|||+..
T Consensus 130 ~~~~~di~G~~~-~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 130 NVKWSDVAGLEG-AKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCGGGSCSCHH-HHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCHHHhcCHHH-HHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 367888887543 222333332222211 22333 2346888999999999764
No 193
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=46.24 E-value=4.6 Score=41.95 Aligned_cols=16 Identities=44% Similarity=0.798 Sum_probs=13.9
Q ss_pred EEeeccCCCCCcceec
Q 005372 118 VFAYGATGSGKTYTMQ 133 (699)
Q Consensus 118 IfAYGqTGSGKTyTm~ 133 (699)
++-||+.|+|||+++.
T Consensus 49 ~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIV 64 (340)
T ss_dssp EEEECSSSSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6779999999999763
No 194
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=46.02 E-value=5 Score=40.44 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=15.5
Q ss_pred CCCEEEEeeccCCCCCccee
Q 005372 113 GRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 113 G~N~tIfAYGqTGSGKTyTm 132 (699)
|....++-||+.|+|||++.
T Consensus 36 ~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 36 KNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp TCCCCEEEESSSSSSHHHHH
T ss_pred CCCCeEEEECcCCcCHHHHH
Confidence 44333888999999999865
No 195
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=45.64 E-value=6.1 Score=41.12 Aligned_cols=46 Identities=22% Similarity=0.219 Sum_probs=27.5
Q ss_pred eeeeceeeCCCCCcHhHHHHhhccchhhhhcC-CCCEEEEeeccCCCCCccee
Q 005372 81 CYQLDSFFGQEDESVSKIFYSEVNPLIPGIFH-GRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 81 ~F~FD~VF~~~~~sQ~~Vf~~~v~plV~~vl~-G~N~tIfAYGqTGSGKTyTm 132 (699)
.|.++.+++.+. ... .+...+..++. +....++-||++|+|||+.+
T Consensus 16 ~~~p~~l~gr~~-----~~~-~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 16 LSVFKEIPFRED-----ILR-DAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp HHHCSSCTTCHH-----HHH-HHHHHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred ccCCCCCCChHH-----HHH-HHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 366666665432 222 22233444443 33458999999999999864
No 196
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=45.62 E-value=5.3 Score=41.33 Aligned_cols=50 Identities=22% Similarity=0.458 Sum_probs=28.5
Q ss_pred eeeceeeCCCCCcHhHHHHhhccchhh-hhcCCC---CEEEEeeccCCCCCccee
Q 005372 82 YQLDSFFGQEDESVSKIFYSEVNPLIP-GIFHGR---NATVFAYGATGSGKTYTM 132 (699)
Q Consensus 82 F~FD~VF~~~~~sQ~~Vf~~~v~plV~-~vl~G~---N~tIfAYGqTGSGKTyTm 132 (699)
..||.+.+.+. .-+.+...+..|+.. ..+.+. ...|+-||++|+|||+..
T Consensus 15 ~~~~di~G~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 15 VKWEDVAGLEG-AKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCGGGSCSCHH-HHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCHHHhcChHH-HHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 57888887643 223333333222211 122221 346889999999999864
No 197
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=44.51 E-value=6 Score=39.24 Aligned_cols=23 Identities=26% Similarity=0.146 Sum_probs=16.6
Q ss_pred hhcCCCCEEEEeeccCCCCCcceec
Q 005372 109 GIFHGRNATVFAYGATGSGKTYTMQ 133 (699)
Q Consensus 109 ~vl~G~N~tIfAYGqTGSGKTyTm~ 133 (699)
.++++.+ ++.+|+||+|||+...
T Consensus 104 ~~~~~~~--~ll~~~tG~GKT~~a~ 126 (237)
T 2fz4_A 104 RWLVDKR--GCIVLPTGSGKTHVAM 126 (237)
T ss_dssp HHTTTSE--EEEEESSSTTHHHHHH
T ss_pred HHHhCCC--EEEEeCCCCCHHHHHH
Confidence 3455555 5667899999998753
No 198
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=44.51 E-value=5.3 Score=40.39 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=16.0
Q ss_pred CCCCEEEEeeccCCCCCccee
Q 005372 112 HGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 112 ~G~N~tIfAYGqTGSGKTyTm 132 (699)
.|....++-||+.|+|||++.
T Consensus 43 ~~~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 43 TGSMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp HTCCCEEEEESCTTSSHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHH
Confidence 344334888999999999865
No 199
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=44.32 E-value=4.7 Score=40.58 Aligned_cols=27 Identities=30% Similarity=0.310 Sum_probs=0.0
Q ss_pred ccCcccCHHHHhcCCCCcHHHHHHHHHH
Q 005372 586 DFLNTASREELVELKGIGQRLADYICEL 613 (699)
Q Consensus 586 v~iNtA~~~eL~~lpGIG~k~A~~Ii~~ 613 (699)
-.|=.|+.+||..+ |||+++|+.|.++
T Consensus 197 ~~i~~As~eeL~~V-GIG~~~A~~I~~~ 223 (226)
T 3c65_A 197 KKMKEATVEELQRA-NIPRAVAEKIYEK 223 (226)
T ss_dssp ----------------------------
T ss_pred HHHHhCCHHHHHHc-CCCHHHHHHHHHH
Confidence 34667999999999 9999999999874
No 200
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=44.16 E-value=5.5 Score=41.59 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=18.7
Q ss_pred hhhhcCCCCEEEEeeccCCCCCccee
Q 005372 107 IPGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 107 V~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
+..+++|.+.-++..++||||||...
T Consensus 56 i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 56 LPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHhcCCCCeEEEECCCCchHHHHH
Confidence 44556664445678899999999873
No 201
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=43.88 E-value=5.8 Score=40.06 Aligned_cols=23 Identities=43% Similarity=0.663 Sum_probs=16.8
Q ss_pred hhhcCCCCEEEEeeccCCCCCccee
Q 005372 108 PGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 108 ~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
+.+++|.+ ++..++||+|||.+.
T Consensus 26 ~~i~~~~~--~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 26 PLMLQGKN--VVVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHhcCCC--EEEEcCCCCcHHHHH
Confidence 34456766 456789999999764
No 202
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=43.53 E-value=4.6 Score=40.88 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=14.9
Q ss_pred EEEEeeccCCCCCccee
Q 005372 116 ATVFAYGATGSGKTYTM 132 (699)
Q Consensus 116 ~tIfAYGqTGSGKTyTm 132 (699)
..++-||++|+|||++.
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 57899999999999864
No 203
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=43.39 E-value=5.3 Score=41.26 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=17.5
Q ss_pred hhhcCCCCEEEEeeccCCCCCccee
Q 005372 108 PGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 108 ~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
+.+++|...-++..++||||||.+.
T Consensus 37 ~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 37 PLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHcCCCCeEEEECCCCCcHHHHH
Confidence 4455663344677899999999764
No 204
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=42.59 E-value=17 Score=29.77 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=23.1
Q ss_pred cCcccCHHHHhcCCCCcHHHHHHHHHH
Q 005372 587 FLNTASREELVELKGIGQRLADYICEL 613 (699)
Q Consensus 587 ~iNtA~~~eL~~lpGIG~k~A~~Ii~~ 613 (699)
.|--++.++|..|+||++.+|+.|.+.
T Consensus 32 ~vA~~~~~eL~~I~G~dE~~a~~l~~~ 58 (70)
T 1u9l_A 32 ELAYVPMKELLEIEGLDEPTVEALRER 58 (70)
T ss_dssp HHHHSCHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHcCCHHHHhhccCCCHHHHHHHHHH
Confidence 344679999999999999999999864
No 205
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=42.43 E-value=6 Score=41.36 Aligned_cols=24 Identities=38% Similarity=0.672 Sum_probs=17.7
Q ss_pred hhhhcCCCCEEEEeeccCCCCCccee
Q 005372 107 IPGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 107 V~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
++.+++|.+ ++..++||||||.+.
T Consensus 52 i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 52 IPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhcCCC--EEEECCCCcHHHHHH
Confidence 345566777 567789999999754
No 206
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=42.04 E-value=5.5 Score=39.70 Aligned_cols=18 Identities=22% Similarity=0.373 Sum_probs=15.2
Q ss_pred EEEEeeccCCCCCcceec
Q 005372 116 ATVFAYGATGSGKTYTMQ 133 (699)
Q Consensus 116 ~tIfAYGqTGSGKTyTm~ 133 (699)
-+++-||+.|+|||+...
T Consensus 59 n~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp SEEEEESCGGGCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 468999999999998753
No 207
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=41.43 E-value=7.6 Score=42.70 Aligned_cols=42 Identities=21% Similarity=0.327 Sum_probs=25.8
Q ss_pred eeceeeCCCCCcHhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCcceec
Q 005372 83 QLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQ 133 (699)
Q Consensus 83 ~FD~VF~~~~~sQ~~Vf~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTm~ 133 (699)
.||.+++.+. . +..+++.+-.+....++-||++|+|||+...
T Consensus 178 ~ld~iiGr~~-----~----i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 178 SLDPVIGRSK-----E----IQRVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp CSCCCCCCHH-----H----HHHHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred CCCCccCcHH-----H----HHHHHHHHhccCCCCeEEECCCCCCHHHHHH
Confidence 5677776431 1 2223333333445567889999999998764
No 208
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=41.28 E-value=15 Score=38.14 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=30.8
Q ss_pred cCcccCHHHHhcCCCCcHHHHHHHHHHHhcCCCCCHHHHhh
Q 005372 587 FLNTASREELVELKGIGQRLADYICELRQSSPVKSLSDLEK 627 (699)
Q Consensus 587 ~iNtA~~~eL~~lpGIG~k~A~~Ii~~R~~~pf~~~~dL~~ 627 (699)
.++..-...|+.||||++++|.+|++ -|.++.+|.+
T Consensus 230 t~~e~~~~mL~~IpGVs~~~A~~I~~-----~ypTp~~L~~ 265 (311)
T 2ziu_A 230 TVREVFARQLMQISGVSGDKAAAVLE-----HYSTVSSLLQ 265 (311)
T ss_dssp BHHHHHHHHHTTBTTCCHHHHHHHHH-----HCSSHHHHHH
T ss_pred cHHHHHHHHHHhccCCCHHHHHHHHH-----HCCCHHHHHH
Confidence 45556678999999999999999997 5899998876
No 209
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=41.27 E-value=6.9 Score=44.77 Aligned_cols=16 Identities=38% Similarity=0.547 Sum_probs=13.4
Q ss_pred EEeeccCCCCCcceec
Q 005372 118 VFAYGATGSGKTYTMQ 133 (699)
Q Consensus 118 IfAYGqTGSGKTyTm~ 133 (699)
.+-.|+.|||||+|+.
T Consensus 208 ~lI~GPPGTGKT~ti~ 223 (646)
T 4b3f_X 208 AIIHGPPGTGKTTTVV 223 (646)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred eEEECCCCCCHHHHHH
Confidence 4567999999999974
No 210
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=41.21 E-value=7 Score=43.83 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=18.3
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCcceec
Q 005372 106 LIPGIFHGRNATVFAYGATGSGKTYTMQ 133 (699)
Q Consensus 106 lV~~vl~G~N~tIfAYGqTGSGKTyTm~ 133 (699)
+++.+.+|...++++ ++||||||.++.
T Consensus 190 ~~~~~~~~~~~~ll~-~~TGsGKT~~~~ 216 (590)
T 3h1t_A 190 AVQSVLQGKKRSLIT-MATGTGKTVVAF 216 (590)
T ss_dssp HHHHHHTTCSEEEEE-ECTTSCHHHHHH
T ss_pred HHHHHhcCCCceEEE-ecCCCChHHHHH
Confidence 334444576655554 899999999864
No 211
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=41.19 E-value=6.8 Score=43.56 Aligned_cols=19 Identities=32% Similarity=0.602 Sum_probs=15.6
Q ss_pred CCEEEEeeccCCCCCccee
Q 005372 114 RNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 114 ~N~tIfAYGqTGSGKTyTm 132 (699)
....|+-||++|+|||+..
T Consensus 237 ~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCEEEEECSTTSSHHHHH
T ss_pred CCCcEEEECcCCCCHHHHH
Confidence 3456899999999999754
No 212
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=40.97 E-value=7.4 Score=40.81 Aligned_cols=24 Identities=46% Similarity=0.559 Sum_probs=17.8
Q ss_pred hhhhcCCCCEEEEeeccCCCCCccee
Q 005372 107 IPGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 107 V~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
+..+++|.|+ +..++||||||.+.
T Consensus 46 i~~i~~~~~~--lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 46 IPIIKEKRDL--MACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHccCCCE--EEEcCCCCHHHHHH
Confidence 3455678775 56789999999754
No 213
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=40.95 E-value=8.1 Score=42.67 Aligned_cols=27 Identities=19% Similarity=0.389 Sum_probs=19.6
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCccee
Q 005372 106 LIPGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 106 lV~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
.+..+++|.+--++..++||||||.+.
T Consensus 149 ai~~i~~~~~~~~ll~apTGsGKT~~~ 175 (508)
T 3fho_A 149 ALPLLLSNPPRNMIGQSQSGTGKTAAF 175 (508)
T ss_dssp SHHHHHCSSCCCEEEECCSSTTSHHHH
T ss_pred HHHHHHcCCCCCEEEECCCCccHHHHH
Confidence 445667773445677899999999863
No 214
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=40.43 E-value=6.5 Score=40.96 Aligned_cols=16 Identities=38% Similarity=0.451 Sum_probs=13.4
Q ss_pred EEEeeccCCCCCccee
Q 005372 117 TVFAYGATGSGKTYTM 132 (699)
Q Consensus 117 tIfAYGqTGSGKTyTm 132 (699)
.++-||++|+|||+.+
T Consensus 53 ~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CEEEESSTTSSHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 3566999999999875
No 215
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=39.75 E-value=8 Score=37.37 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=19.7
Q ss_pred chhhhhcCC-C--CEEEEeeccCCCCCccee
Q 005372 105 PLIPGIFHG-R--NATVFAYGATGSGKTYTM 132 (699)
Q Consensus 105 plV~~vl~G-~--N~tIfAYGqTGSGKTyTm 132 (699)
+-+|.++.| . ...+.-+|++|+|||..+
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHH
Confidence 445666643 2 346777899999999875
No 216
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=39.55 E-value=12 Score=37.21 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=22.9
Q ss_pred hHHHHhhccchhhhhcCCC-CEEEEeeccCCCCCcce
Q 005372 96 SKIFYSEVNPLIPGIFHGR-NATVFAYGATGSGKTYT 131 (699)
Q Consensus 96 ~~Vf~~~v~plV~~vl~G~-N~tIfAYGqTGSGKTyT 131 (699)
+.+|...+..++.....+. ...|+..|+.|||||+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 12 KHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTI 48 (253)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHH
T ss_pred HHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHH
Confidence 4455555555554433322 35688999999999974
No 217
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=39.34 E-value=8.4 Score=40.75 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=17.3
Q ss_pred hhhhcCCCCEEEEeeccCCCCCcce
Q 005372 107 IPGIFHGRNATVFAYGATGSGKTYT 131 (699)
Q Consensus 107 V~~vl~G~N~tIfAYGqTGSGKTyT 131 (699)
+..+++|.| ++..++||||||..
T Consensus 30 i~~i~~~~~--~lv~apTGsGKT~~ 52 (414)
T 3oiy_A 30 AKRIVQGKS--FTMVAPTGVGKTTF 52 (414)
T ss_dssp HHHHTTTCC--EECCSCSSSSHHHH
T ss_pred HHHHhcCCC--EEEEeCCCCCHHHH
Confidence 344567776 57889999999984
No 218
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=39.23 E-value=7.1 Score=39.70 Aligned_cols=50 Identities=22% Similarity=0.250 Sum_probs=23.8
Q ss_pred eeeceeeCCCCCcHhHHHHhhccchhh-hhcCCCC----EEEEeeccCCCCCccee
Q 005372 82 YQLDSFFGQEDESVSKIFYSEVNPLIP-GIFHGRN----ATVFAYGATGSGKTYTM 132 (699)
Q Consensus 82 F~FD~VF~~~~~sQ~~Vf~~~v~plV~-~vl~G~N----~tIfAYGqTGSGKTyTm 132 (699)
..||.|-+.+. ..+++.+.++.|+-. .++++++ ..++-||+.|+|||+.+
T Consensus 7 ~~~~di~g~~~-~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 7 VTWADIGALED-IREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -----CCHHHH-HHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCHHHhCCHHH-HHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 46666665432 223344434433322 1222211 12889999999999764
No 219
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=39.13 E-value=7.4 Score=43.57 Aligned_cols=20 Identities=40% Similarity=0.439 Sum_probs=15.9
Q ss_pred cCCCCEEEEeeccCCCCCccee
Q 005372 111 FHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 111 l~G~N~tIfAYGqTGSGKTyTm 132 (699)
-.|.+ +.-.|+||||||.+|
T Consensus 258 ~~g~~--i~I~GptGSGKTTlL 277 (511)
T 2oap_1 258 EHKFS--AIVVGETASGKTTTL 277 (511)
T ss_dssp HTTCC--EEEEESTTSSHHHHH
T ss_pred hCCCE--EEEECCCCCCHHHHH
Confidence 35766 566799999999986
No 220
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=39.01 E-value=26 Score=34.31 Aligned_cols=56 Identities=21% Similarity=0.263 Sum_probs=36.6
Q ss_pred cCcccCHHHHhc-CCCCc--HHHHHHHHHHHhc------CCC-CCHHHHhhc-CCCHHHHHHhhccc
Q 005372 587 FLNTASREELVE-LKGIG--QRLADYICELRQS------SPV-KSLSDLEKI-GLSTKQVYNLFGKA 642 (699)
Q Consensus 587 ~iNtA~~~eL~~-lpGIG--~k~A~~Ii~~R~~------~pf-~~~~dL~~v-Gi~~~~~~~l~~~~ 642 (699)
.|-.++.++|.. |.++| ..+|++|.+.-+. ..+ ...++|..+ |||+++.+-+.-..
T Consensus 63 ~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~~~~~~~g~~~~~~~~L~~l~GIG~~tA~~il~~~ 129 (211)
T 2abk_A 63 AMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTA 129 (211)
T ss_dssp HHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHTTTSCCSCHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHhCCCCChHHHHHHHHHH
Confidence 334566777755 55555 4566666654331 112 567899999 99999988877554
No 221
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=38.75 E-value=35 Score=33.73 Aligned_cols=58 Identities=14% Similarity=0.298 Sum_probs=36.4
Q ss_pred ccCcccCHHHHhc-CCCCc--------HHHHHHHHHHHhcCCCCCHHHHhhc-CCCHHHHHHhhcccc
Q 005372 586 DFLNTASREELVE-LKGIG--------QRLADYICELRQSSPVKSLSDLEKI-GLSTKQVYNLFGKAA 643 (699)
Q Consensus 586 v~iNtA~~~eL~~-lpGIG--------~k~A~~Ii~~R~~~pf~~~~dL~~v-Gi~~~~~~~l~~~~~ 643 (699)
-.|-.++.++|.. |.|+| .+.|+.|++.-....=...++|..+ |||+++.+-+.-...
T Consensus 63 ~~la~~~~~~l~~~i~~~G~~~kA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~a~ 130 (225)
T 1kg2_A 63 TDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSL 130 (225)
T ss_dssp HHHHHSCHHHHHHHHTTSCCTHHHHHHHHHHHHHHHHSTTSCCCSHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHHHHhCCCchHHHHHHhcCCCCcHHHHHHHHHHhC
Confidence 3445678888865 46666 3444444432211111468999999 999999888776543
No 222
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=38.57 E-value=8.1 Score=36.07 Aligned_cols=18 Identities=33% Similarity=0.508 Sum_probs=14.4
Q ss_pred EEEEeeccCCCCCcceec
Q 005372 116 ATVFAYGATGSGKTYTMQ 133 (699)
Q Consensus 116 ~tIfAYGqTGSGKTyTm~ 133 (699)
-.+.-.|++|||||+.+-
T Consensus 10 ei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 356678999999998764
No 223
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.38 E-value=19 Score=39.60 Aligned_cols=75 Identities=27% Similarity=0.359 Sum_probs=47.0
Q ss_pred eeeceeeCCCCCcHhHHHHhhccchhh-hhcC--C--CCEEEEeeccCCCCCccee--------------ccC---CCCC
Q 005372 82 YQLDSFFGQEDESVSKIFYSEVNPLIP-GIFH--G--RNATVFAYGATGSGKTYTM--------------QGS---EERP 139 (699)
Q Consensus 82 F~FD~VF~~~~~sQ~~Vf~~~v~plV~-~vl~--G--~N~tIfAYGqTGSGKTyTm--------------~G~---~~~~ 139 (699)
-+||.|-|-+. .-+++.+.+..|+.. ..+. | .--.|+-||+.|+|||... .|+ ....
T Consensus 179 v~~~DIgGld~-~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~v 257 (437)
T 4b4t_I 179 ESYSDIGGLES-QIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYL 257 (437)
T ss_dssp CCGGGTCSCHH-HHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSS
T ss_pred CcceecCcHHH-HHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccC
Confidence 57777777543 334555555445432 2332 3 2356999999999999754 222 2345
Q ss_pred CchHHHHHHHHHhhhcCC
Q 005372 140 GLMPLAMSKILSICQSTG 157 (699)
Q Consensus 140 GIipral~~LF~~~~~~~ 157 (699)
|--.+.++.+|.......
T Consensus 258 Gesek~ir~lF~~Ar~~a 275 (437)
T 4b4t_I 258 GDGPRLCRQIFKVAGENA 275 (437)
T ss_dssp SHHHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHhcC
Confidence 777889999998776543
No 224
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.81 E-value=8.7 Score=42.27 Aligned_cols=50 Identities=28% Similarity=0.412 Sum_probs=31.3
Q ss_pred eeeceeeCCCCCcHhHHHHhhccchhh-hhcC--CC--CEEEEeeccCCCCCccee
Q 005372 82 YQLDSFFGQEDESVSKIFYSEVNPLIP-GIFH--GR--NATVFAYGATGSGKTYTM 132 (699)
Q Consensus 82 F~FD~VF~~~~~sQ~~Vf~~~v~plV~-~vl~--G~--N~tIfAYGqTGSGKTyTm 132 (699)
.+||.|-|-+. .-+++.+.+.-|+.. ..+. |. .-.|+-||+.|+|||++.
T Consensus 178 v~~~digGl~~-~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 178 ITFDGIGGLTE-QIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSGGGCSCHH-HHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CChhHhCChHH-HHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHH
Confidence 57888887653 334555555555432 2333 22 346889999999999753
No 225
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=37.76 E-value=8.7 Score=39.79 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=17.6
Q ss_pred hhhhcCCCCEEEEeeccCCCCCccee
Q 005372 107 IPGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 107 V~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
++.+++|.+ ++..++||+|||.+.
T Consensus 39 i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 39 IPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHhcCCc--EEEECCCCCcHHHHH
Confidence 345566776 466789999999764
No 226
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=37.48 E-value=23 Score=36.41 Aligned_cols=38 Identities=32% Similarity=0.349 Sum_probs=25.1
Q ss_pred CcccCHHHHhcCCCCcHHHHHHHHHH-HhcC--CCCCHHHH
Q 005372 588 LNTASREELVELKGIGQRLADYICEL-RQSS--PVKSLSDL 625 (699)
Q Consensus 588 iNtA~~~eL~~lpGIG~k~A~~Ii~~-R~~~--pf~~~~dL 625 (699)
+=.++.++|..+.||+.+.|++|++. |+.. +|.+..++
T Consensus 30 ~~~~~~~~L~~~~gis~~~a~~~i~~a~~~~~~~~~~~~~~ 70 (322)
T 2i1q_A 30 IATATVGELTDIEGISEKAAAKMIMGARDLCDLGFKSGIDL 70 (322)
T ss_dssp HHTCCHHHHHTSTTCCHHHHHHHHHHHHHHTTCSCCCTHHH
T ss_pred HHhCCHHHHHHhhCcCHHHHHHHHHHHHHhhhhcCCcHHHH
Confidence 33567777777788887777777754 3322 67776666
No 227
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=37.09 E-value=11 Score=35.96 Aligned_cols=16 Identities=31% Similarity=0.382 Sum_probs=13.2
Q ss_pred EEEeeccCCCCCccee
Q 005372 117 TVFAYGATGSGKTYTM 132 (699)
Q Consensus 117 tIfAYGqTGSGKTyTm 132 (699)
.+.-+|++|+|||+.+
T Consensus 25 ~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFS 40 (235)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4556899999999875
No 228
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=36.61 E-value=9.3 Score=41.92 Aligned_cols=44 Identities=27% Similarity=0.476 Sum_probs=27.3
Q ss_pred eeceeeCCCCCcHhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCccee
Q 005372 83 QLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 83 ~FD~VF~~~~~sQ~~Vf~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
.||.++++ +.+.. ....+...+-.|.-..++-||++|+|||+..
T Consensus 24 ~l~~ivGq-----~~~~~-~~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 24 NLAQYIGQ-----QHLLA-AGKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp STTTCCSC-----HHHHS-TTSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred CHHHhCCc-----HHHHh-chHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 46666653 22331 1234444444555568899999999999864
No 229
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=36.40 E-value=8.7 Score=39.63 Aligned_cols=15 Identities=33% Similarity=0.729 Sum_probs=13.6
Q ss_pred EEeeccCCCCCccee
Q 005372 118 VFAYGATGSGKTYTM 132 (699)
Q Consensus 118 IfAYGqTGSGKTyTm 132 (699)
++-||++|+|||+++
T Consensus 39 ~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRC 53 (354)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 778999999999876
No 230
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=35.95 E-value=31 Score=36.23 Aligned_cols=39 Identities=18% Similarity=0.143 Sum_probs=29.5
Q ss_pred cCCCCcHHHHHHHHHHHhcCCCCCHHHHhh-c-CCCHHHHHH-hhcc
Q 005372 598 ELKGIGQRLADYICELRQSSPVKSLSDLEK-I-GLSTKQVYN-LFGK 641 (699)
Q Consensus 598 ~lpGIG~k~A~~Ii~~R~~~pf~~~~dL~~-v-Gi~~~~~~~-l~~~ 641 (699)
.+||||+|.|-++|. -|.+++.+.+ . .+..+.+.. .+++
T Consensus 241 gv~GiG~ktA~kli~-----~~gsle~il~~~~~~~~~~~~~~~~~~ 282 (340)
T 1b43_A 241 GIKGIGLKKALEIVR-----HSKDPLAKFQKQSDVDLYAIKEFFLNP 282 (340)
T ss_dssp CSTTCCHHHHHHHHH-----TCSSGGGGTGGGCSSCHHHHHHHHHSC
T ss_pred CCCCccHHHHHHHHH-----HcCCHHHHHcCCCCccHHHHHHHHhCC
Confidence 799999999999998 6889999866 4 776544333 3444
No 231
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=35.86 E-value=7.7 Score=44.53 Aligned_cols=17 Identities=12% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHhhc-CCCHHHHHHhh
Q 005372 623 SDLEKI-GLSTKQVYNLF 639 (699)
Q Consensus 623 ~dL~~v-Gi~~~~~~~l~ 639 (699)
+||..| |||++..+.|.
T Consensus 561 eeL~~I~GIG~~~A~sI~ 578 (615)
T 3sgi_A 561 DQLAAVEGVGPTIAAAVT 578 (615)
T ss_dssp ------------------
T ss_pred HHHhhCCCCCHHHHHHHH
Confidence 444445 55554444443
No 232
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=35.61 E-value=16 Score=35.05 Aligned_cols=19 Identities=37% Similarity=0.359 Sum_probs=14.5
Q ss_pred CCEEEEeeccCCCCCccee
Q 005372 114 RNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 114 ~N~tIfAYGqTGSGKTyTm 132 (699)
..-.|.-.|++|||||+.+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp SCEEEEEECCTTSCTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3445667799999999865
No 233
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=35.61 E-value=9.8 Score=39.85 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=18.7
Q ss_pred hhhcCC---CCEEEEe--eccCCCCCccee
Q 005372 108 PGIFHG---RNATVFA--YGATGSGKTYTM 132 (699)
Q Consensus 108 ~~vl~G---~N~tIfA--YGqTGSGKTyTm 132 (699)
..+..| ....++- ||+.|+|||+.+
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 444445 4567888 999999999865
No 234
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=35.57 E-value=8.7 Score=39.04 Aligned_cols=45 Identities=22% Similarity=0.347 Sum_probs=26.0
Q ss_pred eeeceeeCCCCCcHhHHHHhhccchhhhhc--CCCCEEEEeeccCCCCCccee
Q 005372 82 YQLDSFFGQEDESVSKIFYSEVNPLIPGIF--HGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 82 F~FD~VF~~~~~sQ~~Vf~~~v~plV~~vl--~G~N~tIfAYGqTGSGKTyTm 132 (699)
..||.+++.+. +.. .+..++..+. .+....|+-||++|+|||+..
T Consensus 9 ~~~~~~ig~~~-----~~~-~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 9 KTLDEYIGQER-----LKQ-KLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CSTTTCCSCHH-----HHH-HHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred ccHHHhhCHHH-----HHH-HHHHHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 46777776432 111 1223333322 234456788999999999764
No 235
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=35.35 E-value=13 Score=41.19 Aligned_cols=26 Identities=35% Similarity=0.542 Sum_probs=19.4
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCcce
Q 005372 106 LIPGIFHGRNATVFAYGATGSGKTYT 131 (699)
Q Consensus 106 lV~~vl~G~N~tIfAYGqTGSGKTyT 131 (699)
.++.++.|.+--++..++||||||.+
T Consensus 102 ~i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 102 TIKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCCCccHH
Confidence 34555655556678899999999986
No 236
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=35.33 E-value=11 Score=33.78 Aligned_cols=15 Identities=33% Similarity=0.525 Sum_probs=12.7
Q ss_pred EEEeeccCCCCCcce
Q 005372 117 TVFAYGATGSGKTYT 131 (699)
Q Consensus 117 tIfAYGqTGSGKTyT 131 (699)
.|+-.|.+|||||+.
T Consensus 3 ~I~l~G~~GsGKsT~ 17 (179)
T 3lw7_A 3 VILITGMPGSGKSEF 17 (179)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467889999999974
No 237
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.21 E-value=9.4 Score=41.61 Aligned_cols=50 Identities=26% Similarity=0.326 Sum_probs=31.4
Q ss_pred eeeceeeCCCCCcHhHHHHhhccchhhh-hcC--CC--CEEEEeeccCCCCCccee
Q 005372 82 YQLDSFFGQEDESVSKIFYSEVNPLIPG-IFH--GR--NATVFAYGATGSGKTYTM 132 (699)
Q Consensus 82 F~FD~VF~~~~~sQ~~Vf~~~v~plV~~-vl~--G~--N~tIfAYGqTGSGKTyTm 132 (699)
-+||.|-|-+. .-+++.+.+.-|+..- .+. |. .-.|+-||+.|+|||...
T Consensus 145 v~~~dIgGl~~-~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 145 STYDMVGGLTK-QIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCGGGSCSCHH-HHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHH
T ss_pred CCHHHhCCHHH-HHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHH
Confidence 57888887653 3345555555555432 333 22 245889999999999653
No 238
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=35.18 E-value=6.9 Score=39.40 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=15.6
Q ss_pred hhcCCCCEEEEeeccCCCCCcceec
Q 005372 109 GIFHGRNATVFAYGATGSGKTYTMQ 133 (699)
Q Consensus 109 ~vl~G~N~tIfAYGqTGSGKTyTm~ 133 (699)
.+++|.++ +..++||+|||.+..
T Consensus 124 ~~l~~~~~--ll~~~tGsGKT~~~~ 146 (282)
T 1rif_A 124 EGLVNRRR--ILNLPTSAGRSLIQA 146 (282)
T ss_dssp HHHHHSEE--EECCCTTSCHHHHHH
T ss_pred HHHhcCCe--EEEcCCCCCcHHHHH
Confidence 34445444 338999999998753
No 239
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=34.76 E-value=9.7 Score=40.07 Aligned_cols=18 Identities=39% Similarity=0.645 Sum_probs=14.9
Q ss_pred CEEEEeeccCCCCCccee
Q 005372 115 NATVFAYGATGSGKTYTM 132 (699)
Q Consensus 115 N~tIfAYGqTGSGKTyTm 132 (699)
...|+-||++|+|||+..
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 446888999999999864
No 240
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=34.71 E-value=21 Score=33.04 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=23.5
Q ss_pred ccCHHHHhcCCCCcHHHHHHHHHHHhc
Q 005372 590 TASREELVELKGIGQRLADYICELRQS 616 (699)
Q Consensus 590 tA~~~eL~~lpGIG~k~A~~Ii~~R~~ 616 (699)
=.+.|||..++|||++..+.|=++|..
T Consensus 85 F~svedL~~V~GIg~k~~e~l~~~~~~ 111 (134)
T 1s5l_U 85 YESVEDVLNIPGLTERQKQILRENLEH 111 (134)
T ss_dssp CSSGGGGGGCTTCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHhCCCCCHHHHHHHHHhhcc
Confidence 457899999999999999999888853
No 241
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=34.52 E-value=8.6 Score=38.73 Aligned_cols=15 Identities=33% Similarity=0.538 Sum_probs=13.5
Q ss_pred EEeeccCCCCCccee
Q 005372 118 VFAYGATGSGKTYTM 132 (699)
Q Consensus 118 IfAYGqTGSGKTyTm 132 (699)
++-||+.|+|||+..
T Consensus 45 ~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 45 MIISGMPGIGKTTSV 59 (323)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 888999999999865
No 242
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=34.52 E-value=14 Score=40.23 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=22.1
Q ss_pred cHhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCccee
Q 005372 94 SVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 94 sQ~~Vf~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
.|.+.+... +..+.+|. ..++..|..|||||+++
T Consensus 29 ~Q~~av~~~----~~~i~~~~-~~~li~G~aGTGKT~ll 62 (459)
T 3upu_A 29 GQKNAFNIV----MKAIKEKK-HHVTINGPAGTGATTLT 62 (459)
T ss_dssp HHHHHHHHH----HHHHHSSS-CEEEEECCTTSCHHHHH
T ss_pred HHHHHHHHH----HHHHhcCC-CEEEEEeCCCCCHHHHH
Confidence 566555433 33333333 37888999999999876
No 243
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=34.47 E-value=12 Score=40.92 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=20.0
Q ss_pred hhcCCCCEEEEeeccCCCCCccee
Q 005372 109 GIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 109 ~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
.+++|++..|...|++|+|||..|
T Consensus 25 ~vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 25 SVKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp TCC-CCCEEEEEECCTTSSHHHHH
T ss_pred EEecCCCEEEEEECCCCCcHHHHH
Confidence 367899999999999999999754
No 244
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=34.27 E-value=15 Score=38.97 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=21.3
Q ss_pred cCCCCcHHHHHHHHHHHhcCCCCCHHHHhh
Q 005372 598 ELKGIGQRLADYICELRQSSPVKSLSDLEK 627 (699)
Q Consensus 598 ~lpGIG~k~A~~Ii~~R~~~pf~~~~dL~~ 627 (699)
.|||||+|.|.++|. -|.+++.+.+
T Consensus 236 gipGiG~KtA~kll~-----~~gsle~i~~ 260 (341)
T 3q8k_A 236 SIRGIGPKRAVDLIQ-----KHKSIEEIVR 260 (341)
T ss_dssp CCTTCCHHHHHHHHH-----HHCSHHHHHH
T ss_pred CCCCccHHHHHHHHH-----HcCCHHHHHH
Confidence 479999999999998 4788888755
No 245
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=34.04 E-value=6.4 Score=40.53 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=13.8
Q ss_pred EEEeeccCCCCCccee
Q 005372 117 TVFAYGATGSGKTYTM 132 (699)
Q Consensus 117 tIfAYGqTGSGKTyTm 132 (699)
.++-||++|+|||+.+
T Consensus 48 ~vll~G~pGtGKT~la 63 (331)
T 2r44_A 48 HILLEGVPGLAKTLSV 63 (331)
T ss_dssp CEEEESCCCHHHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 4678999999999865
No 246
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=33.88 E-value=13 Score=42.13 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=18.8
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCccee
Q 005372 106 LIPGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 106 lV~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
+|+.+++|.+ +++.++||+|||.+.
T Consensus 52 ~i~~il~g~d--~lv~~pTGsGKTl~~ 76 (591)
T 2v1x_A 52 TINVTMAGKE--VFLVMPTGGGKSLCY 76 (591)
T ss_dssp HHHHHHTTCC--EEEECCTTSCTTHHH
T ss_pred HHHHHHcCCC--EEEEECCCChHHHHH
Confidence 3445677888 567889999999753
No 247
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=33.85 E-value=6.4 Score=46.66 Aligned_cols=42 Identities=24% Similarity=0.450 Sum_probs=25.9
Q ss_pred eeceeeCCCCCcHhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCcceec
Q 005372 83 QLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQ 133 (699)
Q Consensus 83 ~FD~VF~~~~~sQ~~Vf~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTm~ 133 (699)
.||.+++.+ ..+..+++.+..+....++-||++|+|||+.+.
T Consensus 168 ~ld~viGr~---------~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 168 KLDPVIGRD---------EEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CSCCCCSCH---------HHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHH
T ss_pred CCcccCCcH---------HHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHH
Confidence 566666542 122334443344544456789999999998764
No 248
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=33.56 E-value=12 Score=35.57 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=19.9
Q ss_pred chhhhhcC-CC--CEEEEeeccCCCCCccee
Q 005372 105 PLIPGIFH-GR--NATVFAYGATGSGKTYTM 132 (699)
Q Consensus 105 plV~~vl~-G~--N~tIfAYGqTGSGKTyTm 132 (699)
+-+|.++. |+ ...+.-+|++|+|||..+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHH
Confidence 34556664 44 346788999999999765
No 249
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=33.53 E-value=13 Score=29.51 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=22.3
Q ss_pred ccCcccCHHHHhcCCCCcHHH-HHHHHHH
Q 005372 586 DFLNTASREELVELKGIGQRL-ADYICEL 613 (699)
Q Consensus 586 v~iNtA~~~eL~~lpGIG~k~-A~~Ii~~ 613 (699)
-.|=.|+.+||..+ ||++. |++|.++
T Consensus 28 ~~i~~As~eeL~~v--ig~~~~A~~I~~~ 54 (63)
T 2a1j_A 28 AELAALSQDELTSI--LGNAANAKQLYDF 54 (63)
T ss_dssp HHHHTCCHHHHHHH--HSCHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHH--cCchHHHHHHHHH
Confidence 45568999999999 99999 9999764
No 250
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=33.34 E-value=25 Score=40.69 Aligned_cols=30 Identities=20% Similarity=0.302 Sum_probs=20.3
Q ss_pred ccCcccCHHHHhcCCCCcHHHHHHHHHHHh
Q 005372 586 DFLNTASREELVELKGIGQRLADYICELRQ 615 (699)
Q Consensus 586 v~iNtA~~~eL~~lpGIG~k~A~~Ii~~R~ 615 (699)
.+|=.++.++|..|+|+|+|.|+.|++.=+
T Consensus 467 ~DL~~L~~e~L~~l~g~G~Ksa~nLl~aIe 496 (667)
T 1dgs_A 467 ADLYHLRKEDLLGLERMGEKSAQNLLRQIE 496 (667)
T ss_dssp GGGGGGCCHHHHTTSSCCSTTHHHHHHHHH
T ss_pred HHHHhcCHHHHhcccccchhhHHHHHHHHH
Confidence 344455567777778888777777776643
No 251
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=33.33 E-value=12 Score=40.71 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=17.8
Q ss_pred hhhhcCCCCEEEEeeccCCCCCccee
Q 005372 107 IPGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 107 V~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
++.+++|.| ++..++||||||.+.
T Consensus 16 i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 16 AQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHcCCC--EEEEcCCCChHHHHH
Confidence 445567777 466789999999774
No 252
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=33.23 E-value=11 Score=36.88 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=17.0
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCccee
Q 005372 106 LIPGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 106 lV~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
+++++-.|--.+ -.|+.|||||+.+
T Consensus 15 ~l~~i~~Ge~~~--liG~nGsGKSTLl 39 (208)
T 3b85_A 15 YVDAIDTNTIVF--GLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHCSEEE--EECCTTSSTTHHH
T ss_pred HHHhccCCCEEE--EECCCCCCHHHHH
Confidence 344454555444 4799999999865
No 253
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=33.06 E-value=11 Score=39.57 Aligned_cols=18 Identities=39% Similarity=0.632 Sum_probs=14.5
Q ss_pred CEEEEeeccCCCCCccee
Q 005372 115 NATVFAYGATGSGKTYTM 132 (699)
Q Consensus 115 N~tIfAYGqTGSGKTyTm 132 (699)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 346778999999999753
No 254
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=33.06 E-value=13 Score=40.07 Aligned_cols=24 Identities=50% Similarity=0.722 Sum_probs=18.2
Q ss_pred hhhhcCCCCEEEEeeccCCCCCccee
Q 005372 107 IPGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 107 V~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
+..+++|.+ +++.++||||||...
T Consensus 87 i~~i~~g~d--~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 87 IPVISSGRD--LMACAQTGSGKTAAF 110 (434)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhcCCC--EEEECCCCCCchHHH
Confidence 445678877 467789999999863
No 255
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=32.91 E-value=11 Score=38.48 Aligned_cols=18 Identities=22% Similarity=0.325 Sum_probs=14.9
Q ss_pred CEEEEeeccCCCCCccee
Q 005372 115 NATVFAYGATGSGKTYTM 132 (699)
Q Consensus 115 N~tIfAYGqTGSGKTyTm 132 (699)
...++-||++|+|||+++
T Consensus 48 ~~~~L~~G~~G~GKT~la 65 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVA 65 (324)
T ss_dssp CSEEEECSSTTSSHHHHH
T ss_pred CeEEEeeCcCCCCHHHHH
Confidence 356788999999999875
No 256
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=32.73 E-value=11 Score=35.35 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=12.6
Q ss_pred EEEeeccCCCCCccee
Q 005372 117 TVFAYGATGSGKTYTM 132 (699)
Q Consensus 117 tIfAYGqTGSGKTyTm 132 (699)
.+.-.|++|||||..+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 3455799999999865
No 257
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=32.73 E-value=29 Score=32.57 Aligned_cols=46 Identities=15% Similarity=0.352 Sum_probs=33.0
Q ss_pred cCHHHHhcCCCCcHHHHHHHHHHHhcCCCCCHHHHhhc-CCCHHHHHHhhccc
Q 005372 591 ASREELVELKGIGQRLADYICELRQSSPVKSLSDLEKI-GLSTKQVYNLFGKA 642 (699)
Q Consensus 591 A~~~eL~~lpGIG~k~A~~Ii~~R~~~pf~~~~dL~~v-Gi~~~~~~~l~~~~ 642 (699)
-=.-.|..|.|||...|..|++.=. ++.-.++ -++...+++|+.-+
T Consensus 27 ~v~~ALt~I~GIG~~~A~~I~~~~g------id~~~r~g~Lt~~ei~~l~~~i 73 (146)
T 3u5c_S 27 KIVYALTTIKGVGRRYSNLVCKKAD------VDLHKRAGELTQEELERIVQIM 73 (146)
T ss_dssp CTTTTGGGSTTCCHHHHHHHHHHHT------CCTTSCSSSCCHHHHHHHHHHH
T ss_pred chHhhHhhhcCCCHHHHHHHHHHcC------CCCCceeccCCHHHHHHHHHHH
Confidence 3344689999999999999998762 2222445 47778888887655
No 258
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=32.67 E-value=40 Score=39.69 Aligned_cols=51 Identities=24% Similarity=0.307 Sum_probs=30.8
Q ss_pred eeeeceeeCCCCCcHhHHHHhhccchhh-hhcC----CCCEEEEeeccCCCCCccee
Q 005372 81 CYQLDSFFGQEDESVSKIFYSEVNPLIP-GIFH----GRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 81 ~F~FD~VF~~~~~sQ~~Vf~~~v~plV~-~vl~----G~N~tIfAYGqTGSGKTyTm 132 (699)
.+.||.+.+.+. .-+.+.+....|+.. .++. .....|+-||++|+|||+.+
T Consensus 200 ~v~~~di~G~~~-~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 200 EVGYDDVGGCRK-QLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SCCGGGCCSCSG-GGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHH
T ss_pred CCCHHHhCChHH-HHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 478899988764 334444433332221 1222 22346888999999999765
No 259
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=32.62 E-value=14 Score=35.30 Aligned_cols=28 Identities=29% Similarity=0.376 Sum_probs=19.0
Q ss_pred chhhhhcC-CC--CEEEEeeccCCCCCccee
Q 005372 105 PLIPGIFH-GR--NATVFAYGATGSGKTYTM 132 (699)
Q Consensus 105 plV~~vl~-G~--N~tIfAYGqTGSGKTyTm 132 (699)
+-+|.++. |. ...+.-+|++|||||..+
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 34455553 33 346777899999999865
No 260
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=32.39 E-value=11 Score=43.08 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=15.2
Q ss_pred EEEEeeccCCCCCcceec
Q 005372 116 ATVFAYGATGSGKTYTMQ 133 (699)
Q Consensus 116 ~tIfAYGqTGSGKTyTm~ 133 (699)
..++..|++|||||+|+.
T Consensus 165 ~~~vi~G~pGTGKTt~l~ 182 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVA 182 (608)
T ss_dssp SEEEEECCTTSTHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHH
Confidence 457888999999999874
No 261
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=32.18 E-value=42 Score=28.59 Aligned_cols=37 Identities=14% Similarity=0.148 Sum_probs=28.8
Q ss_pred HHHHHHHHhcC-CCCCHHHHhhc-CCCHHHHHHhhcccc
Q 005372 607 ADYICELRQSS-PVKSLSDLEKI-GLSTKQVYNLFGKAA 643 (699)
Q Consensus 607 A~~Ii~~R~~~-pf~~~~dL~~v-Gi~~~~~~~l~~~~~ 643 (699)
-+++=..|.-- ||.+..|+..+ |||++..++|..++.
T Consensus 41 ~KA~~sLk~~P~~i~s~~e~~~L~giG~ki~~~L~e~L~ 79 (87)
T 2kp7_A 41 QKALRSLQRYPLPLRSGKEAKILQHFGDRLCRMLDEKLK 79 (87)
T ss_dssp HHHHHHHHHCCSCCCSHHHHHTCTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHhhcccHHHHHHHHHHHH
Confidence 34444455444 99999999999 999999999887764
No 262
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=31.99 E-value=13 Score=35.70 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=13.2
Q ss_pred EEEeeccCCCCCccee
Q 005372 117 TVFAYGATGSGKTYTM 132 (699)
Q Consensus 117 tIfAYGqTGSGKTyTm 132 (699)
.|.-.|++|||||.++
T Consensus 10 ~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVR 25 (208)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4666899999999865
No 263
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=31.66 E-value=48 Score=34.48 Aligned_cols=42 Identities=14% Similarity=0.197 Sum_probs=29.5
Q ss_pred HHHhcCCCCcHHHHHHHHHHHhcCCCCCHHHHhh--------c-CCCHHHHHHhh
Q 005372 594 EELVELKGIGQRLADYICELRQSSPVKSLSDLEK--------I-GLSTKQVYNLF 639 (699)
Q Consensus 594 ~eL~~lpGIG~k~A~~Ii~~R~~~pf~~~~dL~~--------v-Gi~~~~~~~l~ 639 (699)
..|..|||||++.++++- . +++++++||.+ + |+++...+++.
T Consensus 157 ~pL~Qlp~i~~~~~~~l~-~---~~i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~ 207 (328)
T 3im1_A 157 NPLRQIPHFNNKILEKCK-E---INVETVYDIMALEDEERDEILTLTDSQLAQVA 207 (328)
T ss_dssp CGGGGSTTCCHHHHHHHH-H---TTCCSHHHHHHSCHHHHHHHCCCCHHHHHHHH
T ss_pred CceeCCCCCCHHHHHHHH-h---CCCCCHHHHhcCCHHHHHhHhCCCHHHHHHHH
Confidence 368999999999998753 2 37888888754 2 56665555443
No 264
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.51 E-value=11 Score=41.74 Aligned_cols=49 Identities=27% Similarity=0.412 Sum_probs=29.4
Q ss_pred eeeceeeCCCCCcHhHHHHhhccchhh-hhcC--C--CCEEEEeeccCCCCCcce
Q 005372 82 YQLDSFFGQEDESVSKIFYSEVNPLIP-GIFH--G--RNATVFAYGATGSGKTYT 131 (699)
Q Consensus 82 F~FD~VF~~~~~sQ~~Vf~~~v~plV~-~vl~--G--~N~tIfAYGqTGSGKTyT 131 (699)
.+||-|-|-+. .-+++.+.+..|+.. ..+. | .--.|+-||+.|+|||+.
T Consensus 206 vt~~DIgGl~~-~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 206 VTYSDVGGCKD-QIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp CCCSSCTTCHH-HHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHH
T ss_pred CCHHHhccHHH-HHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHH
Confidence 57777777543 334444444444432 1333 2 234689999999999964
No 265
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=31.45 E-value=14 Score=40.15 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=17.5
Q ss_pred hhhhcCCCCEEEEeeccCCCCCccee
Q 005372 107 IPGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 107 V~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
++.+++|.++ +..++||||||.+.
T Consensus 13 i~~~~~~~~~--l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 13 ALPAKKGKNT--IICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHhCCCCE--EEEeCCCChHHHHH
Confidence 3345677774 56789999999763
No 266
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=31.32 E-value=12 Score=38.71 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=16.4
Q ss_pred hcCCCCEEEEeeccCCCCCccee
Q 005372 110 IFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 110 vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
+++|++..|...|++|+|||..|
T Consensus 13 ~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 13 VKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp -----CEEEEEEEETTSSHHHHH
T ss_pred EEcCCCEEEEEECCCCCCHHHHH
Confidence 67889999999999999999765
No 267
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=31.29 E-value=14 Score=35.71 Aligned_cols=26 Identities=35% Similarity=0.557 Sum_probs=17.7
Q ss_pred hhhhcCC-C--CEEEEeeccCCCCCccee
Q 005372 107 IPGIFHG-R--NATVFAYGATGSGKTYTM 132 (699)
Q Consensus 107 V~~vl~G-~--N~tIfAYGqTGSGKTyTm 132 (699)
+|.++.| + ...+.-+|++|+|||..+
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 4555433 2 345677899999999864
No 268
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=31.26 E-value=12 Score=34.99 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=12.8
Q ss_pred EEEeeccCCCCCccee
Q 005372 117 TVFAYGATGSGKTYTM 132 (699)
Q Consensus 117 tIfAYGqTGSGKTyTm 132 (699)
.+.-.|++|||||..+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999754
No 269
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=31.15 E-value=12 Score=43.30 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=19.5
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCcceec
Q 005372 106 LIPGIFHGRNATVFAYGATGSGKTYTMQ 133 (699)
Q Consensus 106 lV~~vl~G~N~tIfAYGqTGSGKTyTm~ 133 (699)
+++.+.......++-||++|+|||+.+.
T Consensus 198 l~~~l~~~~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 198 AIQVLCRRRKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp HHHHHTSSSSCEEEEECCTTSSHHHHHH
T ss_pred HHHHHhccCCCCeEEEcCCCCCHHHHHH
Confidence 3433344445567889999999998764
No 270
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=31.10 E-value=11 Score=38.72 Aligned_cols=18 Identities=39% Similarity=0.647 Sum_probs=15.0
Q ss_pred CCEEEEeeccCCCCCcce
Q 005372 114 RNATVFAYGATGSGKTYT 131 (699)
Q Consensus 114 ~N~tIfAYGqTGSGKTyT 131 (699)
.+..|+-||++|+|||+.
T Consensus 24 ~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELV 41 (304)
T ss_dssp TTSCEEEESCTTSCHHHH
T ss_pred CCCcEEEECCCCchHHHH
Confidence 456788899999999975
No 271
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=30.83 E-value=7.5 Score=40.28 Aligned_cols=24 Identities=42% Similarity=0.600 Sum_probs=17.6
Q ss_pred hhhhcCCCCEEEEeeccCCCCCccee
Q 005372 107 IPGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 107 V~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
+..+++|.+ ++..++||||||.+.
T Consensus 52 i~~i~~~~~--~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 52 IMPIIEGHD--VLAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHTCC--EEECCCSSHHHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 445566776 466789999999873
No 272
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=30.81 E-value=11 Score=40.13 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=14.8
Q ss_pred CCCCEEEEeeccCCCCCcceec
Q 005372 112 HGRNATVFAYGATGSGKTYTMQ 133 (699)
Q Consensus 112 ~G~N~tIfAYGqTGSGKTyTm~ 133 (699)
.+.|. +..|++|||||+++.
T Consensus 34 ~~~~~--~i~G~~G~GKs~~~~ 53 (392)
T 4ag6_A 34 TNSNW--TILAKPGAGKSFTAK 53 (392)
T ss_dssp CCCCE--EEECCTTSSHHHHHH
T ss_pred ccCce--EEEcCCCCCHHHHHH
Confidence 44454 557999999998763
No 273
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=30.81 E-value=15 Score=33.57 Aligned_cols=15 Identities=33% Similarity=0.585 Sum_probs=13.0
Q ss_pred EEEeeccCCCCCcce
Q 005372 117 TVFAYGATGSGKTYT 131 (699)
Q Consensus 117 tIfAYGqTGSGKTyT 131 (699)
.|+-.|..|||||+.
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 578899999999974
No 274
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=30.66 E-value=58 Score=32.05 Aligned_cols=56 Identities=16% Similarity=0.325 Sum_probs=37.9
Q ss_pred ccCcccCHHHHhc-CC--CCcHHHHHHHHHHHhc-------C-CCCCHHHHhhc-CCCHHHHHHhhccc
Q 005372 586 DFLNTASREELVE-LK--GIGQRLADYICELRQS-------S-PVKSLSDLEKI-GLSTKQVYNLFGKA 642 (699)
Q Consensus 586 v~iNtA~~~eL~~-lp--GIG~k~A~~Ii~~R~~-------~-pf~~~~dL~~v-Gi~~~~~~~l~~~~ 642 (699)
-.|-.++.++|.. |. |....+|++|.+.-+. . | ...++|.++ |||+++.+-+.-..
T Consensus 68 ~~la~a~~e~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g~~p-~~~~~L~~lpGIG~~TA~~il~~~ 135 (221)
T 1kea_A 68 EDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVINDYGGRVP-RNRKAILDLPGVGKYTCAAVMCLA 135 (221)
T ss_dssp HHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTTSCC-SCHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhCCCch-HHHHHHHhCCCCcHHHHHHHHHHh
Confidence 4455678888844 33 5555667766654321 2 3 568999999 99999998877554
No 275
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=30.65 E-value=12 Score=38.78 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=15.1
Q ss_pred CEEEEeeccCCCCCccee
Q 005372 115 NATVFAYGATGSGKTYTM 132 (699)
Q Consensus 115 N~tIfAYGqTGSGKTyTm 132 (699)
...++-||+.|+|||+++
T Consensus 38 ~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp CSEEEEESCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346788999999999875
No 276
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=30.58 E-value=13 Score=40.08 Aligned_cols=22 Identities=27% Similarity=0.167 Sum_probs=16.1
Q ss_pred hhcCCCCEEEEeeccCCCCCccee
Q 005372 109 GIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 109 ~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
.+++|.+ ++..|+||+|||.+.
T Consensus 104 ~i~~~~~--~ll~~~TGsGKT~~~ 125 (472)
T 2fwr_A 104 RWLVDKR--GCIVLPTGSGKTHVA 125 (472)
T ss_dssp HHTTTTE--EEEECCTTSCHHHHH
T ss_pred HHHhcCC--EEEEeCCCCCHHHHH
Confidence 4455544 566799999999875
No 277
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=30.16 E-value=13 Score=37.90 Aligned_cols=19 Identities=21% Similarity=0.405 Sum_probs=15.3
Q ss_pred CCEEEEeeccCCCCCccee
Q 005372 114 RNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 114 ~N~tIfAYGqTGSGKTyTm 132 (699)
|+-++...|++|+|||..|
T Consensus 1 f~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp CEEEEEEEESSSSSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHH
Confidence 3557788899999999765
No 278
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=30.14 E-value=15 Score=42.85 Aligned_cols=42 Identities=24% Similarity=0.377 Sum_probs=25.9
Q ss_pred eeceeeCCCCCcHhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCcceec
Q 005372 83 QLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQ 133 (699)
Q Consensus 83 ~FD~VF~~~~~sQ~~Vf~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTm~ 133 (699)
.||.+.+.+. .+..+++.+..+....++-||++|+|||....
T Consensus 178 ~ld~iiG~~~---------~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 178 SLDPVIGRSK---------EIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp CSCCCCCCHH---------HHHHHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred CCCCccCchH---------HHHHHHHHHhCCCCCCeEEECCCCCCHHHHHH
Confidence 5666766431 12233334444555567889999999997653
No 279
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=29.72 E-value=16 Score=34.88 Aligned_cols=19 Identities=26% Similarity=0.135 Sum_probs=15.1
Q ss_pred CCEEEEeeccCCCCCccee
Q 005372 114 RNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 114 ~N~tIfAYGqTGSGKTyTm 132 (699)
....|...|.+|||||+.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SSEEEEEEECTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456788899999999764
No 280
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=29.69 E-value=13 Score=34.63 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=13.7
Q ss_pred EEEEeeccCCCCCccee
Q 005372 116 ATVFAYGATGSGKTYTM 132 (699)
Q Consensus 116 ~tIfAYGqTGSGKTyTm 132 (699)
..|.-.|+.|||||+.+
T Consensus 10 ~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35677899999999754
No 281
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=29.30 E-value=36 Score=30.55 Aligned_cols=46 Identities=20% Similarity=0.183 Sum_probs=31.4
Q ss_pred CHHHHhcCCCCcHHHHHHHHHHHhcCCCCCHHHHhhcCCCHHHHHHhhccc
Q 005372 592 SREELVELKGIGQRLADYICELRQSSPVKSLSDLEKIGLSTKQVYNLFGKA 642 (699)
Q Consensus 592 ~~~eL~~lpGIG~k~A~~Ii~~R~~~pf~~~~dL~~vGi~~~~~~~l~~~~ 642 (699)
-.-.|..|.|||...|..|++.=.-.|-.-+. -+....+++|+.-+
T Consensus 14 v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~-----~Lt~~ei~~l~~~i 59 (114)
T 3r8n_M 14 AVIALTSIYGVGKTRSKAILAAAGIAEDVKIS-----ELSEGQIDTLRDEV 59 (114)
T ss_dssp HHHHGGGSTTCCHHHHHHHHHHTTCCTTCCST-----TCCHHHHHHHHHHH
T ss_pred eHhhHhhhcCcCHHHHHHHHHHcCcCcccCcc-----cCCHHHHHHHHHHH
Confidence 34578999999999999999864222333222 45667777777655
No 282
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=29.28 E-value=16 Score=33.48 Aligned_cols=15 Identities=20% Similarity=0.395 Sum_probs=13.2
Q ss_pred EEEeeccCCCCCcce
Q 005372 117 TVFAYGATGSGKTYT 131 (699)
Q Consensus 117 tIfAYGqTGSGKTyT 131 (699)
.|+-.|.+|||||+.
T Consensus 5 ~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 5 MIILNGGSSAGKSGI 19 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999975
No 283
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=29.26 E-value=12 Score=38.23 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=16.4
Q ss_pred hhhcCCCCEEEEeeccCCCCCccee
Q 005372 108 PGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 108 ~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
..+++|.. -++..++||||||.+.
T Consensus 38 ~~~~~~~~-~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 38 PLFLNDEY-NIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHTCS-EEEEECCSSSSHHHHH
T ss_pred HHHhCCCC-CEEEECCCCChHHHHH
Confidence 34455632 3567799999999874
No 284
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=29.10 E-value=13 Score=35.28 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=12.4
Q ss_pred EEeeccCCCCCccee
Q 005372 118 VFAYGATGSGKTYTM 132 (699)
Q Consensus 118 IfAYGqTGSGKTyTm 132 (699)
+.-.|+.|||||+.+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455899999999865
No 285
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=28.88 E-value=16 Score=41.60 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=17.9
Q ss_pred hhhhcCCCCEEEEeeccCCCCCccee
Q 005372 107 IPGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 107 V~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
++.+++|.+ ++..++||+|||.+.
T Consensus 16 i~~il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 16 AQPALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHSSCC--EEECCCTTSCHHHHH
T ss_pred HHHHHhCCC--EEEEcCCCCcHHHHH
Confidence 344556776 567799999999865
No 286
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=28.86 E-value=13 Score=34.89 Aligned_cols=15 Identities=27% Similarity=0.620 Sum_probs=12.2
Q ss_pred EEeeccCCCCCccee
Q 005372 118 VFAYGATGSGKTYTM 132 (699)
Q Consensus 118 IfAYGqTGSGKTyTm 132 (699)
+.-.|++|||||+++
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345799999999875
No 287
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=28.74 E-value=17 Score=33.67 Aligned_cols=15 Identities=33% Similarity=0.660 Sum_probs=12.7
Q ss_pred EEEeeccCCCCCcce
Q 005372 117 TVFAYGATGSGKTYT 131 (699)
Q Consensus 117 tIfAYGqTGSGKTyT 131 (699)
.|+-.|.+|||||+.
T Consensus 7 ~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 7 NIYLIGLMGAGKTSV 21 (185)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477889999999974
No 288
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=28.46 E-value=27 Score=30.46 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=22.6
Q ss_pred ccCHHHHhcCCCCcHHHHHHHHHHHh
Q 005372 590 TASREELVELKGIGQRLADYICELRQ 615 (699)
Q Consensus 590 tA~~~eL~~lpGIG~k~A~~Ii~~R~ 615 (699)
-.+.+||..++|||++..++|-.|..
T Consensus 48 F~s~edL~~V~Gig~~~~e~l~~~l~ 73 (97)
T 3arc_U 48 YESVEDVLNIPGLTERQKQILRENLE 73 (97)
T ss_dssp CSSGGGGGGCTTCCHHHHHHHHHTGG
T ss_pred CCCHHHHHhccCCCHHHHHHHHHHhc
Confidence 46789999999999999999988763
No 289
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=28.32 E-value=13 Score=40.05 Aligned_cols=18 Identities=33% Similarity=0.593 Sum_probs=14.7
Q ss_pred CEEEEeeccCCCCCccee
Q 005372 115 NATVFAYGATGSGKTYTM 132 (699)
Q Consensus 115 N~tIfAYGqTGSGKTyTm 132 (699)
+.-++.+|.||||||.++
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 445678899999999875
No 290
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=28.28 E-value=18 Score=40.39 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=18.0
Q ss_pred hhhhcCCCCEEEEeeccCCCCCcce
Q 005372 107 IPGIFHGRNATVFAYGATGSGKTYT 131 (699)
Q Consensus 107 V~~vl~G~N~tIfAYGqTGSGKTyT 131 (699)
|..++.|.+--++..++||||||.+
T Consensus 52 i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 52 IKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp HHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHccCCCeEEEEcCCCcHHHHH
Confidence 3445544445678889999999986
No 291
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=28.23 E-value=14 Score=35.39 Aligned_cols=15 Identities=33% Similarity=0.609 Sum_probs=12.5
Q ss_pred EEeeccCCCCCccee
Q 005372 118 VFAYGATGSGKTYTM 132 (699)
Q Consensus 118 IfAYGqTGSGKTyTm 132 (699)
+.-.|++|||||..+
T Consensus 7 i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 7 VVLSGPSGAGKSTLL 21 (198)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999876
No 292
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=28.19 E-value=16 Score=33.77 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=13.2
Q ss_pred EEEeeccCCCCCccee
Q 005372 117 TVFAYGATGSGKTYTM 132 (699)
Q Consensus 117 tIfAYGqTGSGKTyTm 132 (699)
.|+..|.+|||||+..
T Consensus 13 ~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 13 NILLTGTPGVGKTTLG 28 (180)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEEeCCCCCHHHHH
Confidence 4677999999999853
No 293
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=28.09 E-value=21 Score=37.80 Aligned_cols=25 Identities=20% Similarity=0.237 Sum_probs=17.3
Q ss_pred cCCCCcHHHHHHHHHHHhcCCCCCHHHHhh
Q 005372 598 ELKGIGQRLADYICELRQSSPVKSLSDLEK 627 (699)
Q Consensus 598 ~lpGIG~k~A~~Ii~~R~~~pf~~~~dL~~ 627 (699)
.+||||+|.|.++|.. |.+++.+.+
T Consensus 238 Gv~GIG~KtA~kLi~~-----~gsle~i~~ 262 (346)
T 2izo_A 238 GIRGIGPERALKIIKK-----YGKIEKAME 262 (346)
T ss_dssp CSTTCCHHHHHHHHHH-----SSCC-----
T ss_pred CCCCcCHHHHHHHHHH-----cCCHHHHHH
Confidence 6999999999999983 666666644
No 294
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=28.04 E-value=22 Score=37.39 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=21.7
Q ss_pred cCCCCcHHHHHHHHHHHhcCCCCCHHHHhh
Q 005372 598 ELKGIGQRLADYICELRQSSPVKSLSDLEK 627 (699)
Q Consensus 598 ~lpGIG~k~A~~Ii~~R~~~pf~~~~dL~~ 627 (699)
.+||||+|.|.++|. -|.+++.+.+
T Consensus 239 Gv~GiG~KtA~kLl~-----~~gsle~i~~ 263 (336)
T 1rxw_A 239 GVKGVGVKKALNYIK-----TYGDIFRALK 263 (336)
T ss_dssp CCTTCCHHHHHHHHH-----HHSSHHHHHH
T ss_pred CCCCcCHHHHHHHHH-----HcCCHHHHHH
Confidence 699999999999998 4678888866
No 295
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=27.81 E-value=36 Score=32.16 Aligned_cols=47 Identities=19% Similarity=0.379 Sum_probs=33.1
Q ss_pred ccCHHHHhcCCCCcHHHHHHHHHHHhcCCCCCHHHHhhc-CCCHHHHHHhhccc
Q 005372 590 TASREELVELKGIGQRLADYICELRQSSPVKSLSDLEKI-GLSTKQVYNLFGKA 642 (699)
Q Consensus 590 tA~~~eL~~lpGIG~k~A~~Ii~~R~~~pf~~~~dL~~v-Gi~~~~~~~l~~~~ 642 (699)
.-=.-.|..|.|||...|..|++.=.-.|- .++ -++...+++|+.-+
T Consensus 24 k~v~~ALt~I~GIG~~~A~~I~~~~gid~~------~r~g~Lt~~ei~~l~~~i 71 (152)
T 3iz6_M 24 QKIMFALTSIKGVGRRFSNIVCKKADIDMN------KRAGELSAEEMDRLMAVV 71 (152)
T ss_dssp SBHHHHHTTSTTCCHHHHHHHHHHHTCCSS------SBTTTSCHHHHHHHHHHH
T ss_pred cEeHhhhhhccCcCHHHHHHHHHHcCCCCC------cEeCcCCHHHHHHHHHHH
Confidence 333457899999999999999987622232 334 46777888777654
No 296
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=27.68 E-value=14 Score=37.08 Aligned_cols=19 Identities=47% Similarity=0.639 Sum_probs=16.5
Q ss_pred CEEEEeeccCCCCCcceec
Q 005372 115 NATVFAYGATGSGKTYTMQ 133 (699)
Q Consensus 115 N~tIfAYGqTGSGKTyTm~ 133 (699)
...||..|..|+||||+|.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAML 24 (228)
T ss_dssp CEEEEEESSTTSSHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHH
Confidence 3568999999999999975
No 297
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=27.58 E-value=12 Score=35.75 Aligned_cols=17 Identities=29% Similarity=0.239 Sum_probs=14.2
Q ss_pred EEEeeccCCCCCcceec
Q 005372 117 TVFAYGATGSGKTYTMQ 133 (699)
Q Consensus 117 tIfAYGqTGSGKTyTm~ 133 (699)
.++-||+.|+|||+.+.
T Consensus 5 i~vi~G~~gsGKTT~ll 21 (184)
T 2orw_A 5 LTVITGPMYSGKTTELL 21 (184)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46779999999998764
No 298
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=27.50 E-value=15 Score=35.39 Aligned_cols=16 Identities=50% Similarity=0.625 Sum_probs=13.0
Q ss_pred EEEeeccCCCCCccee
Q 005372 117 TVFAYGATGSGKTYTM 132 (699)
Q Consensus 117 tIfAYGqTGSGKTyTm 132 (699)
.+.-.|++|||||..+
T Consensus 32 ~~~l~GpnGsGKSTLl 47 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFA 47 (251)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4455899999999876
No 299
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=27.40 E-value=29 Score=29.90 Aligned_cols=43 Identities=14% Similarity=0.123 Sum_probs=29.0
Q ss_pred HHHhcCCCCcHHHHHHHHHHHhcCCCCCHHHHhh---c-CCCHHHHHHhhc
Q 005372 594 EELVELKGIGQRLADYICELRQSSPVKSLSDLEK---I-GLSTKQVYNLFG 640 (699)
Q Consensus 594 ~eL~~lpGIG~k~A~~Ii~~R~~~pf~~~~dL~~---v-Gi~~~~~~~l~~ 640 (699)
.++..|||||+..+++..+ .+|..--.|.- + +-.......|..
T Consensus 18 K~V~evpGIG~~~~~~L~~----~Gf~kAy~lLGqFL~l~kd~~~F~~WLk 64 (89)
T 1ci4_A 18 KPVGSLAGIGEVLGKKLEE----RGFDKAYVVLGQFLVLKKDEDLFREWLK 64 (89)
T ss_dssp CCGGGSTTCCHHHHHHHHH----TTCCSHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CCcccCCCcCHHHHHHHHH----cCccHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4678899999999998877 36776655532 2 445555555543
No 300
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=27.23 E-value=16 Score=34.25 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=12.9
Q ss_pred EEEeeccCCCCCccee
Q 005372 117 TVFAYGATGSGKTYTM 132 (699)
Q Consensus 117 tIfAYGqTGSGKTyTm 132 (699)
.|.-.|++|||||+.+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4666799999999754
No 301
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=27.19 E-value=15 Score=36.49 Aligned_cols=18 Identities=28% Similarity=0.211 Sum_probs=15.1
Q ss_pred EEEEeeccCCCCCcceec
Q 005372 116 ATVFAYGATGSGKTYTMQ 133 (699)
Q Consensus 116 ~tIfAYGqTGSGKTyTm~ 133 (699)
..++-||..|+|||..+.
T Consensus 13 ~i~litG~mGsGKTT~ll 30 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELI 30 (223)
T ss_dssp EEEEEECSTTSCHHHHHH
T ss_pred EEEEEECCCCCcHHHHHH
Confidence 467889999999998765
No 302
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=27.17 E-value=23 Score=37.18 Aligned_cols=18 Identities=39% Similarity=0.504 Sum_probs=15.3
Q ss_pred CEEEEeeccCCCCCccee
Q 005372 115 NATVFAYGATGSGKTYTM 132 (699)
Q Consensus 115 N~tIfAYGqTGSGKTyTm 132 (699)
...+.-.|++|+|||.++
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456778899999999886
No 303
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=27.04 E-value=21 Score=38.67 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=16.0
Q ss_pred hcCCCCEEEEeeccCCCCCccee
Q 005372 110 IFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 110 vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
+++|.| ++..|+||||||...
T Consensus 5 l~~g~~--vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 5 LKKGMT--TVLDFHPGAGKTRRF 25 (440)
T ss_dssp TSTTCE--EEECCCTTSSTTTTH
T ss_pred hhCCCC--EEEEcCCCCCHHHHH
Confidence 456665 467899999999873
No 304
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=26.89 E-value=51 Score=37.86 Aligned_cols=43 Identities=30% Similarity=0.495 Sum_probs=32.5
Q ss_pred HHHhcCCCCcHHHHHHHHHHHhcCCCCCHHHHhh--------c-CCCHHHHHHhhc
Q 005372 594 EELVELKGIGQRLADYICELRQSSPVKSLSDLEK--------I-GLSTKQVYNLFG 640 (699)
Q Consensus 594 ~eL~~lpGIG~k~A~~Ii~~R~~~pf~~~~dL~~--------v-Gi~~~~~~~l~~ 640 (699)
-.|..|||||+.+|.+.. +.+|++++||.+ + |++.+.++.+..
T Consensus 646 ~~L~qlp~v~~~rar~L~----~~G~~s~~dl~~~~~~~l~~~~~~~~~i~~~~~~ 697 (720)
T 2zj8_A 646 IPLMQLPLVGRRRARALY----NSGFRSIEDISQARPEELLKIEGIGVKTVEAIFK 697 (720)
T ss_dssp GGGTTSTTCCHHHHHHHH----TTTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHH
T ss_pred hhhhhCCCCCHHHHHHHH----HcCCCCHHHHHhCCHHHHHHhHhHHHHHHHHHHH
Confidence 467899999999999875 348999999953 3 567766666653
No 305
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=26.63 E-value=18 Score=37.62 Aligned_cols=17 Identities=41% Similarity=0.628 Sum_probs=13.9
Q ss_pred EEEEeeccCCCCCccee
Q 005372 116 ATVFAYGATGSGKTYTM 132 (699)
Q Consensus 116 ~tIfAYGqTGSGKTyTm 132 (699)
..|.-.|++|||||.++
T Consensus 103 ~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 35666799999999986
No 306
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=26.63 E-value=17 Score=33.98 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=13.0
Q ss_pred EEEeeccCCCCCccee
Q 005372 117 TVFAYGATGSGKTYTM 132 (699)
Q Consensus 117 tIfAYGqTGSGKTyTm 132 (699)
.+.-.|+.|||||+.+
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4566899999999865
No 307
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=26.44 E-value=17 Score=37.70 Aligned_cols=17 Identities=35% Similarity=0.669 Sum_probs=14.7
Q ss_pred EEEEeeccCCCCCccee
Q 005372 116 ATVFAYGATGSGKTYTM 132 (699)
Q Consensus 116 ~tIfAYGqTGSGKTyTm 132 (699)
..+.-.|++|||||.++
T Consensus 101 ~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 46778899999999986
No 308
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=26.15 E-value=20 Score=34.78 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=8.7
Q ss_pred EEEeeccCCCCCccee
Q 005372 117 TVFAYGATGSGKTYTM 132 (699)
Q Consensus 117 tIfAYGqTGSGKTyTm 132 (699)
.+.-.|++|||||..+
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455799999999865
No 309
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=26.03 E-value=65 Score=26.52 Aligned_cols=31 Identities=10% Similarity=0.267 Sum_probs=23.9
Q ss_pred cCcccCHHHHhcCCCCcHHHHHHHHHHHhcC
Q 005372 587 FLNTASREELVELKGIGQRLADYICELRQSS 617 (699)
Q Consensus 587 ~iNtA~~~eL~~lpGIG~k~A~~Ii~~R~~~ 617 (699)
++-.-+.++|..++|+|+|..+.|.+.=++.
T Consensus 34 dL~~~s~~dLlki~n~G~kSl~EI~~~L~~~ 64 (73)
T 1z3e_B 34 ELANKTEEDMMKVRNLGRKSLEEVKAKLEEL 64 (73)
T ss_dssp HHHTSCHHHHHTSTTCCHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 3345688999999999999999887765443
No 310
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=25.95 E-value=16 Score=38.38 Aligned_cols=23 Identities=22% Similarity=0.112 Sum_probs=16.3
Q ss_pred hhhcCCCCEEEEeeccCCCCCcceec
Q 005372 108 PGIFHGRNATVFAYGATGSGKTYTMQ 133 (699)
Q Consensus 108 ~~vl~G~N~tIfAYGqTGSGKTyTm~ 133 (699)
..+++| -++..++||+|||.+..
T Consensus 19 ~~~~~~---~~ll~~~tG~GKT~~~~ 41 (494)
T 1wp9_A 19 AKCKET---NCLIVLPTGLGKTLIAM 41 (494)
T ss_dssp HHGGGS---CEEEECCTTSCHHHHHH
T ss_pred HHHhhC---CEEEEcCCCCCHHHHHH
Confidence 345556 34567899999998763
No 311
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=25.89 E-value=17 Score=40.22 Aligned_cols=17 Identities=35% Similarity=0.597 Sum_probs=14.8
Q ss_pred EEEEeeccCCCCCccee
Q 005372 116 ATVFAYGATGSGKTYTM 132 (699)
Q Consensus 116 ~tIfAYGqTGSGKTyTm 132 (699)
-.++-||++|+|||++.
T Consensus 78 ~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 47888999999999875
No 312
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=25.86 E-value=21 Score=40.47 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=16.6
Q ss_pred hhhcCCCCEEEEeeccCCCCCcce
Q 005372 108 PGIFHGRNATVFAYGATGSGKTYT 131 (699)
Q Consensus 108 ~~vl~G~N~tIfAYGqTGSGKTyT 131 (699)
..+++|.|+ +..++||||||..
T Consensus 23 ~~~l~g~~~--iv~~~TGsGKTl~ 44 (696)
T 2ykg_A 23 LPAMKGKNT--IICAPTGCGKTFV 44 (696)
T ss_dssp HHHHTTCCE--EEECCTTSSHHHH
T ss_pred HHHHcCCCE--EEEcCCCchHHHH
Confidence 345567774 6778999999985
No 313
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=25.76 E-value=17 Score=34.66 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=13.7
Q ss_pred hhcCCCCEEEEeeccCCCCCccee
Q 005372 109 GIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 109 ~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
.+-.|. .+.-.|++|||||..+
T Consensus 16 ~i~~Ge--i~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGR--VVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCC--EEEEECSTTSSHHHHH
T ss_pred CCCCCC--EEEEECCCCCCHHHHH
Confidence 334454 3445699999999865
No 314
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=25.72 E-value=15 Score=41.48 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=15.2
Q ss_pred CEEEEeeccCCCCCcceec
Q 005372 115 NATVFAYGATGSGKTYTMQ 133 (699)
Q Consensus 115 N~tIfAYGqTGSGKTyTm~ 133 (699)
++.++..|..|||||+|+.
T Consensus 22 ~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 22 RSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp SSCEEEEECTTSCHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHH
Confidence 3446778999999999974
No 315
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=25.68 E-value=77 Score=31.36 Aligned_cols=57 Identities=23% Similarity=0.260 Sum_probs=38.3
Q ss_pred ccCcccCHHHHhc-CC--CCcHHHHHHHHHHHhc------CCC-CCHHHHhhc-CCCHHHHHHhhccc
Q 005372 586 DFLNTASREELVE-LK--GIGQRLADYICELRQS------SPV-KSLSDLEKI-GLSTKQVYNLFGKA 642 (699)
Q Consensus 586 v~iNtA~~~eL~~-lp--GIG~k~A~~Ii~~R~~------~pf-~~~~dL~~v-Gi~~~~~~~l~~~~ 642 (699)
-.|-.++.++|.. |. |....+|++|.+.-+. ..+ ...++|..+ |||+++.+-+.-..
T Consensus 66 ~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~a 133 (226)
T 1orn_A 66 HDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVA 133 (226)
T ss_dssp HHHHSSCHHHHHHHTGGGSSHHHHHHHHHHHHHHHHHHSTTSCCSCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHCCCccHHHHHHHHHHH
Confidence 3445678888755 43 5555677777655432 112 568999999 99999988877554
No 316
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=25.49 E-value=38 Score=32.03 Aligned_cols=46 Identities=26% Similarity=0.425 Sum_probs=32.4
Q ss_pred CHHHHhcCCCCcHHHHHHHHHHHhcCCCCCHHHHhhc-CCCHHHHHHhhcccc
Q 005372 592 SREELVELKGIGQRLADYICELRQSSPVKSLSDLEKI-GLSTKQVYNLFGKAA 643 (699)
Q Consensus 592 ~~~eL~~lpGIG~k~A~~Ii~~R~~~pf~~~~dL~~v-Gi~~~~~~~l~~~~~ 643 (699)
-.-.|..|.|||...|..|++.=.-.|- .++ -++...+++|+.-+-
T Consensus 28 v~~aLt~I~GIG~~~A~~I~~~~gid~~------~r~~~Lt~~ei~~l~~~i~ 74 (155)
T 2xzm_M 28 TPIALTGIRGIGRRFAYIICKVLKIDPN------ARAGLLTEDQCNKITDLIA 74 (155)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHTTCCSS------SCSSCSCHHHHHHHHHHHH
T ss_pred EEEeeecccccCHHHHHHHHHHcCCCcc------cccccCCHHHHHHHHHHHh
Confidence 3467999999999999999986532233 344 467777777765543
No 317
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=25.00 E-value=22 Score=32.25 Aligned_cols=27 Identities=19% Similarity=0.490 Sum_probs=19.9
Q ss_pred hhhhhcC-CCCEEEEeeccCCCCCccee
Q 005372 106 LIPGIFH-GRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 106 lV~~vl~-G~N~tIfAYGqTGSGKTyTm 132 (699)
+++.++. .....|...|..|+|||..+
T Consensus 8 ~~~~~~~~~~~~~i~v~G~~~~GKssli 35 (183)
T 1moz_A 8 MFDKLWGSNKELRILILGLDGAGKTTIL 35 (183)
T ss_dssp HHGGGTTCSSCEEEEEEEETTSSHHHHH
T ss_pred HHHHhcCCCCccEEEEECCCCCCHHHHH
Confidence 4445555 55677888999999999754
No 318
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=24.90 E-value=20 Score=32.94 Aligned_cols=15 Identities=33% Similarity=0.510 Sum_probs=13.0
Q ss_pred EEEeeccCCCCCcce
Q 005372 117 TVFAYGATGSGKTYT 131 (699)
Q Consensus 117 tIfAYGqTGSGKTyT 131 (699)
.|+-.|..|||||+.
T Consensus 5 ~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 5 VVVVTGVPGVGSTTS 19 (192)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999974
No 319
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=24.77 E-value=21 Score=32.58 Aligned_cols=16 Identities=31% Similarity=0.576 Sum_probs=13.0
Q ss_pred EEEeeccCCCCCccee
Q 005372 117 TVFAYGATGSGKTYTM 132 (699)
Q Consensus 117 tIfAYGqTGSGKTyTm 132 (699)
.|.-.|..|||||+..
T Consensus 6 ~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4677899999999753
No 320
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=24.72 E-value=34 Score=40.47 Aligned_cols=74 Identities=20% Similarity=0.306 Sum_probs=44.6
Q ss_pred eeeceeeCCCCCcHhHHHHhhccchhh-hhcCCCC----EEEEeeccCCCCCcceec------cC-----------CCCC
Q 005372 82 YQLDSFFGQEDESVSKIFYSEVNPLIP-GIFHGRN----ATVFAYGATGSGKTYTMQ------GS-----------EERP 139 (699)
Q Consensus 82 F~FD~VF~~~~~sQ~~Vf~~~v~plV~-~vl~G~N----~tIfAYGqTGSGKTyTm~------G~-----------~~~~ 139 (699)
..||.|-|-+. .-+++.+.+.-|+-. .++.++. ..|+-||+.|+|||...- |- ....
T Consensus 201 v~~~dIgGl~~-~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 201 VGYDDIGGCRK-QLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (806)
T ss_dssp CCGGGCCSCCT-THHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCT
T ss_pred CChhhhcCHHH-HHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccc
Confidence 56777777654 334555544444432 3455443 469999999999997652 10 1234
Q ss_pred CchHHHHHHHHHhhhcC
Q 005372 140 GLMPLAMSKILSICQST 156 (699)
Q Consensus 140 GIipral~~LF~~~~~~ 156 (699)
|-....++.+|+.....
T Consensus 280 gese~~lr~lF~~A~~~ 296 (806)
T 3cf2_A 280 GESESNLRKAFEEAEKN 296 (806)
T ss_dssp THHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHc
Confidence 55566677777766543
No 321
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=24.63 E-value=33 Score=36.73 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=20.8
Q ss_pred CCCCcHHHHHHHHHHHhcCCCCCHHHHhh
Q 005372 599 LKGIGQRLADYICELRQSSPVKSLSDLEK 627 (699)
Q Consensus 599 lpGIG~k~A~~Ii~~R~~~pf~~~~dL~~ 627 (699)
|||||+|.|-++|. -|.+++.+.+
T Consensus 237 IpGIG~KtA~kLl~-----~~gsle~i~~ 260 (379)
T 1ul1_X 237 IRGIGPKRAVDLIQ-----KHKSIEEIVR 260 (379)
T ss_dssp CTTCCHHHHHHHHH-----HSSSHHHHHT
T ss_pred CCCcCHHHHHHHHH-----HcCCHHHHHH
Confidence 79999999999998 4788888755
No 322
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=24.55 E-value=17 Score=40.50 Aligned_cols=16 Identities=38% Similarity=0.474 Sum_probs=14.1
Q ss_pred EEEeeccCCCCCccee
Q 005372 117 TVFAYGATGSGKTYTM 132 (699)
Q Consensus 117 tIfAYGqTGSGKTyTm 132 (699)
.|+-||++|+|||+.+
T Consensus 66 GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLA 81 (499)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3899999999999865
No 323
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=24.51 E-value=25 Score=39.36 Aligned_cols=17 Identities=35% Similarity=0.573 Sum_probs=14.5
Q ss_pred EEEEeeccCCCCCccee
Q 005372 116 ATVFAYGATGSGKTYTM 132 (699)
Q Consensus 116 ~tIfAYGqTGSGKTyTm 132 (699)
..|.-.|++|||||.++
T Consensus 294 eVI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCcccHHHHH
Confidence 46777899999999886
No 324
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=24.29 E-value=23 Score=33.54 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=13.2
Q ss_pred EEEeeccCCCCCccee
Q 005372 117 TVFAYGATGSGKTYTM 132 (699)
Q Consensus 117 tIfAYGqTGSGKTyTm 132 (699)
.|+-.|.+|||||...
T Consensus 27 ~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLG 42 (199)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5778899999999753
No 325
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=24.18 E-value=1e+02 Score=32.49 Aligned_cols=57 Identities=14% Similarity=0.242 Sum_probs=37.0
Q ss_pred cCcccCHHHHhc-CCCCcH-HHHHHHHHHHh-------cCCCCCHHHHhhc-CCCHHHHHHhhcccc
Q 005372 587 FLNTASREELVE-LKGIGQ-RLADYICELRQ-------SSPVKSLSDLEKI-GLSTKQVYNLFGKAA 643 (699)
Q Consensus 587 ~iNtA~~~eL~~-lpGIG~-k~A~~Ii~~R~-------~~pf~~~~dL~~v-Gi~~~~~~~l~~~~~ 643 (699)
.|=.|+.++|.. +.|+|= .+|++|.+.-+ ..-=...++|.++ |||+++.+-+.....
T Consensus 73 ~la~a~~~~l~~~i~~~G~~~ra~~l~~~a~~~~~~~~g~~p~~~~~L~~l~GIG~~tA~~il~~~~ 139 (369)
T 3fsp_A 73 ALADADEDEVLKAWEGLGYYSRVRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLAY 139 (369)
T ss_dssp HHHTSCHHHHHHTTTTSSCTHHHHHHHHHHHHHHHHHTTCCCCSHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHhcCCCcCHHHHHHHHHHHC
Confidence 445778888855 566661 14555544322 1111578999999 999999988776553
No 326
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.05 E-value=42 Score=31.55 Aligned_cols=47 Identities=28% Similarity=0.370 Sum_probs=32.3
Q ss_pred ccCHHHHhcCCCCcHHHHHHHHHHHhcCCCCCHHHHhhc-CCCHHHHHHhhccc
Q 005372 590 TASREELVELKGIGQRLADYICELRQSSPVKSLSDLEKI-GLSTKQVYNLFGKA 642 (699)
Q Consensus 590 tA~~~eL~~lpGIG~k~A~~Ii~~R~~~pf~~~~dL~~v-Gi~~~~~~~l~~~~ 642 (699)
.-=.-.|..|.|||...|..|++.=.-.|- .++ -++...+++|+.-+
T Consensus 19 k~v~~aLt~I~GIG~~~A~~I~~~~gid~~------~r~g~Lt~~ei~~i~~~i 66 (148)
T 3j20_O 19 KQLRWALTAIKGIGINFATMVCRVAGLDPF------MKAGYLTDEQVKKIEEIL 66 (148)
T ss_dssp SCHHHHHHHSTTCCHHHHHHHHHHHTCCSS------SCTTBCCHHHHHHHHHHH
T ss_pred CEehhhhhhccCcCHHHHHHHHHHhCCCCC------ceeccCCHHHHHHHHHHH
Confidence 334457999999999999999986522233 334 36667777777554
No 327
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=24.04 E-value=24 Score=33.39 Aligned_cols=19 Identities=26% Similarity=0.555 Sum_probs=14.8
Q ss_pred CCEEEEeeccCCCCCccee
Q 005372 114 RNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 114 ~N~tIfAYGqTGSGKTyTm 132 (699)
....|.-.|.+|||||+.+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456777899999999754
No 328
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=24.02 E-value=23 Score=31.93 Aligned_cols=15 Identities=13% Similarity=0.036 Sum_probs=12.6
Q ss_pred EEEeeccCCCCCcce
Q 005372 117 TVFAYGATGSGKTYT 131 (699)
Q Consensus 117 tIfAYGqTGSGKTyT 131 (699)
.|+-.|..|||||+.
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467789999999975
No 329
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=23.98 E-value=27 Score=35.91 Aligned_cols=18 Identities=39% Similarity=0.708 Sum_probs=14.2
Q ss_pred EEEEeeccCCCCCcceec
Q 005372 116 ATVFAYGATGSGKTYTMQ 133 (699)
Q Consensus 116 ~tIfAYGqTGSGKTyTm~ 133 (699)
..|.-.|++|+|||+++.
T Consensus 106 ~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 355667999999999873
No 330
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=23.91 E-value=20 Score=38.44 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=21.0
Q ss_pred cCCCCcHHHHHHHHHHHhcCCCCCHHHHhh
Q 005372 598 ELKGIGQRLADYICELRQSSPVKSLSDLEK 627 (699)
Q Consensus 598 ~lpGIG~k~A~~Ii~~R~~~pf~~~~dL~~ 627 (699)
.|||||+|.|.++|. -|.++|.+.+
T Consensus 255 GVpGIG~KtA~kLl~-----~~gsle~il~ 279 (363)
T 3ory_A 255 GFEGIGPKKALQLVK-----AYGGIEKIPK 279 (363)
T ss_dssp CSTTCCHHHHHHHHH-----HHTSSTTSCG
T ss_pred CCCCcCHHHHHHHHH-----HcCCHHHHHH
Confidence 789999999999998 4677777755
No 331
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=23.62 E-value=19 Score=41.06 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=14.4
Q ss_pred EEEeeccCCCCCcceec
Q 005372 117 TVFAYGATGSGKTYTMQ 133 (699)
Q Consensus 117 tIfAYGqTGSGKTyTm~ 133 (699)
.++..|+.|||||+|+.
T Consensus 197 ~~li~GppGTGKT~~~~ 213 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSA 213 (624)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred CeEEECCCCCCHHHHHH
Confidence 45679999999999974
No 332
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=23.51 E-value=17 Score=36.75 Aligned_cols=17 Identities=18% Similarity=0.282 Sum_probs=14.7
Q ss_pred EEEEeeccCCCCCccee
Q 005372 116 ATVFAYGATGSGKTYTM 132 (699)
Q Consensus 116 ~tIfAYGqTGSGKTyTm 132 (699)
..++-+|+.|+|||..+
T Consensus 32 ~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 57888999999999765
No 333
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=23.30 E-value=18 Score=38.29 Aligned_cols=20 Identities=50% Similarity=0.483 Sum_probs=14.8
Q ss_pred cCCCCEEEEeeccCCCCCccee
Q 005372 111 FHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 111 l~G~N~tIfAYGqTGSGKTyTm 132 (699)
-.|.+..| .|+||||||.++
T Consensus 173 ~~G~~i~i--vG~sGsGKSTll 192 (361)
T 2gza_A 173 QLERVIVV--AGETGSGKTTLM 192 (361)
T ss_dssp HTTCCEEE--EESSSSCHHHHH
T ss_pred hcCCEEEE--ECCCCCCHHHHH
Confidence 35665544 499999999876
No 334
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=23.17 E-value=27 Score=37.63 Aligned_cols=16 Identities=25% Similarity=0.196 Sum_probs=13.4
Q ss_pred EEEeeccCCCCCccee
Q 005372 117 TVFAYGATGSGKTYTM 132 (699)
Q Consensus 117 tIfAYGqTGSGKTyTm 132 (699)
-++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4678899999999874
No 335
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=23.08 E-value=33 Score=32.88 Aligned_cols=27 Identities=37% Similarity=0.519 Sum_probs=19.2
Q ss_pred chhhhhcC-CC--CEEEEeeccCCCCCcce
Q 005372 105 PLIPGIFH-GR--NATVFAYGATGSGKTYT 131 (699)
Q Consensus 105 plV~~vl~-G~--N~tIfAYGqTGSGKTyT 131 (699)
+-+|.++. |+ ...+.-+|.+|+|||.-
T Consensus 17 ~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l 46 (251)
T 2zts_A 17 PGFDELIEGGFPEGTTVLLTGGTGTGKTTF 46 (251)
T ss_dssp TTTGGGTTTSEETTCEEEEECCTTSSHHHH
T ss_pred HHHHHhhcCCCCCCeEEEEEeCCCCCHHHH
Confidence 44566665 43 34677799999999964
No 336
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=23.07 E-value=24 Score=41.01 Aligned_cols=16 Identities=38% Similarity=0.478 Sum_probs=14.2
Q ss_pred EEEeeccCCCCCccee
Q 005372 117 TVFAYGATGSGKTYTM 132 (699)
Q Consensus 117 tIfAYGqTGSGKTyTm 132 (699)
.++-||++|+|||+..
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 7889999999999864
No 337
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=23.05 E-value=20 Score=33.15 Aligned_cols=16 Identities=38% Similarity=0.370 Sum_probs=13.0
Q ss_pred EEEeeccCCCCCccee
Q 005372 117 TVFAYGATGSGKTYTM 132 (699)
Q Consensus 117 tIfAYGqTGSGKTyTm 132 (699)
...-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4457899999999765
No 338
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=23.03 E-value=24 Score=35.15 Aligned_cols=15 Identities=47% Similarity=0.538 Sum_probs=12.5
Q ss_pred EEEeeccCCCCCcce
Q 005372 117 TVFAYGATGSGKTYT 131 (699)
Q Consensus 117 tIfAYGqTGSGKTyT 131 (699)
.|+-.|++|||||..
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 467889999999963
No 339
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=22.96 E-value=19 Score=37.78 Aligned_cols=19 Identities=47% Similarity=0.719 Sum_probs=14.3
Q ss_pred CCCCEEEEeeccCCCCCccee
Q 005372 112 HGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 112 ~G~N~tIfAYGqTGSGKTyTm 132 (699)
.|.+. .-.|++|||||.++
T Consensus 170 ~g~~v--~i~G~~GsGKTTll 188 (330)
T 2pt7_A 170 IGKNV--IVCGGTGSGKTTYI 188 (330)
T ss_dssp HTCCE--EEEESTTSCHHHHH
T ss_pred CCCEE--EEECCCCCCHHHHH
Confidence 46544 45699999999875
No 340
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=22.87 E-value=20 Score=34.42 Aligned_cols=15 Identities=47% Similarity=0.700 Sum_probs=12.8
Q ss_pred EEeeccCCCCCccee
Q 005372 118 VFAYGATGSGKTYTM 132 (699)
Q Consensus 118 IfAYGqTGSGKTyTm 132 (699)
+.-.|++|+|||.++
T Consensus 4 i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLI 18 (189)
T ss_dssp EEEESCCSSCHHHHH
T ss_pred EEEECCCCChHHHHH
Confidence 556799999999876
No 341
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=22.74 E-value=95 Score=32.07 Aligned_cols=55 Identities=22% Similarity=0.279 Sum_probs=36.5
Q ss_pred cCcccCHHHHhc-CCCCcH-HHHHHHHHHHh-------cC-CCCCHHHHhh-c-CCCHHHHHHhhccc
Q 005372 587 FLNTASREELVE-LKGIGQ-RLADYICELRQ-------SS-PVKSLSDLEK-I-GLSTKQVYNLFGKA 642 (699)
Q Consensus 587 ~iNtA~~~eL~~-lpGIG~-k~A~~Ii~~R~-------~~-pf~~~~dL~~-v-Gi~~~~~~~l~~~~ 642 (699)
.|-.|+.++|.. |.|+|= .+|++|.+.=+ .. | ...++|.+ + |||+++..-+....
T Consensus 83 ~La~a~~eel~~~ir~lG~~~KA~~L~~~A~~i~~~~~g~~p-~~~~~Ll~~LpGIG~kTA~~iL~~a 149 (287)
T 3n5n_X 83 DLASASLEEVNQLWAGLGYYSRGRRLQEGARKVVEELGGHMP-RTAETLQQLLPGVGRYTAGAIASIA 149 (287)
T ss_dssp HHHTSCHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSTTCCC-SSHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc-HHHHHHHHHcCCCCHHHHHHHHHHh
Confidence 445678888855 566662 25665554321 11 3 46899998 9 99999999887544
No 342
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=22.74 E-value=22 Score=32.56 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=13.6
Q ss_pred EEEEeeccCCCCCccee
Q 005372 116 ATVFAYGATGSGKTYTM 132 (699)
Q Consensus 116 ~tIfAYGqTGSGKTyTm 132 (699)
..|.-.|..|||||+.+
T Consensus 9 ~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp EEEEEECSTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 35677899999999754
No 343
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=22.56 E-value=20 Score=34.78 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=11.8
Q ss_pred EEeeccCCCCCccee
Q 005372 118 VFAYGATGSGKTYTM 132 (699)
Q Consensus 118 IfAYGqTGSGKTyTm 132 (699)
+.-.|++|||||..+
T Consensus 26 ~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 26 LVICGPSGVGKGTLI 40 (218)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 344699999999865
No 344
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=22.51 E-value=21 Score=35.77 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=16.9
Q ss_pred CCCCEEEEeeccCCCCCccee
Q 005372 112 HGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 112 ~G~N~tIfAYGqTGSGKTyTm 132 (699)
.|+...|...|.+|+|||..+
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLi 25 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLI 25 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHH
T ss_pred CccEEEEEEECCCCCCHHHHH
Confidence 588899999999999999643
No 345
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=22.46 E-value=81 Score=26.44 Aligned_cols=31 Identities=10% Similarity=0.267 Sum_probs=24.3
Q ss_pred cCcccCHHHHhcCCCCcHHHHHHHHHHHhcC
Q 005372 587 FLNTASREELVELKGIGQRLADYICELRQSS 617 (699)
Q Consensus 587 ~iNtA~~~eL~~lpGIG~k~A~~Ii~~R~~~ 617 (699)
++=.-+.++|..++|+|+|..+.|.+.=++.
T Consensus 41 dL~~~se~dLlki~n~G~kSl~EI~~~L~e~ 71 (79)
T 3gfk_B 41 ELANKTEEDMMKVRNLGRKSLEEVKAKLEEL 71 (79)
T ss_dssp HHTTCCHHHHTTSTTCHHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHcCCCCHhHHHHHHHHHHHc
Confidence 3345688999999999999999998755443
No 346
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=22.37 E-value=18 Score=34.94 Aligned_cols=17 Identities=24% Similarity=0.202 Sum_probs=14.4
Q ss_pred EEEeeccCCCCCcceec
Q 005372 117 TVFAYGATGSGKTYTMQ 133 (699)
Q Consensus 117 tIfAYGqTGSGKTyTm~ 133 (699)
..+-||..|||||..+.
T Consensus 10 i~v~~G~mgsGKTT~ll 26 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELI 26 (191)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 56789999999998765
No 347
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=22.26 E-value=23 Score=39.46 Aligned_cols=24 Identities=25% Similarity=0.492 Sum_probs=17.4
Q ss_pred hhhhcCCCCEEEEeeccCCCCCccee
Q 005372 107 IPGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 107 V~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
+..+..|. -|+-||++|+|||+..
T Consensus 35 ~~al~~~~--~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 35 LLAALSGE--SVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHTC--EEEEECCSSSSHHHHH
T ss_pred HHHHhcCC--eeEeecCchHHHHHHH
Confidence 33344444 5778999999999875
No 348
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=22.17 E-value=30 Score=32.25 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=15.2
Q ss_pred CCCCEEEEeeccCCCCCcce
Q 005372 112 HGRNATVFAYGATGSGKTYT 131 (699)
Q Consensus 112 ~G~N~tIfAYGqTGSGKTyT 131 (699)
.+..-.|.-.|..|||||+.
T Consensus 5 ~~~~~~I~i~G~~GsGKST~ 24 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTV 24 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHH
T ss_pred ccCceEEEEECCCCCCHHHH
Confidence 34455688899999999975
No 349
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=22.17 E-value=26 Score=32.12 Aligned_cols=15 Identities=33% Similarity=0.554 Sum_probs=12.5
Q ss_pred EEeeccCCCCCccee
Q 005372 118 VFAYGATGSGKTYTM 132 (699)
Q Consensus 118 IfAYGqTGSGKTyTm 132 (699)
.+-+|++|||||..|
T Consensus 26 ~~I~G~NGsGKStil 40 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456899999999865
No 350
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=21.99 E-value=21 Score=39.60 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=14.4
Q ss_pred EEEEeeccCCCCCccee
Q 005372 116 ATVFAYGATGSGKTYTM 132 (699)
Q Consensus 116 ~tIfAYGqTGSGKTyTm 132 (699)
..|+-||++|+|||+.+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34889999999999864
No 351
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=21.99 E-value=23 Score=32.75 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=13.7
Q ss_pred EEEEeeccCCCCCcce
Q 005372 116 ATVFAYGATGSGKTYT 131 (699)
Q Consensus 116 ~tIfAYGqTGSGKTyT 131 (699)
..|+..|..|||||+.
T Consensus 6 ~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTL 21 (193)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4678899999999975
No 352
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=21.92 E-value=25 Score=32.38 Aligned_cols=15 Identities=40% Similarity=0.716 Sum_probs=12.9
Q ss_pred EEEeeccCCCCCcce
Q 005372 117 TVFAYGATGSGKTYT 131 (699)
Q Consensus 117 tIfAYGqTGSGKTyT 131 (699)
.|+-.|..|||||+.
T Consensus 5 ~I~l~G~~GsGKsT~ 19 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQ 19 (196)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 577889999999974
No 353
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=21.90 E-value=23 Score=37.78 Aligned_cols=17 Identities=35% Similarity=0.669 Sum_probs=14.8
Q ss_pred EEEEeeccCCCCCccee
Q 005372 116 ATVFAYGATGSGKTYTM 132 (699)
Q Consensus 116 ~tIfAYGqTGSGKTyTm 132 (699)
..+.-.|++|||||.++
T Consensus 158 ~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 46778899999999986
No 354
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=21.88 E-value=44 Score=29.27 Aligned_cols=46 Identities=11% Similarity=0.130 Sum_probs=34.6
Q ss_pred hcCCCCcHHHHHHHHHHHhcCCCCCHHHHhhc-CCCHHHHHHhhccc
Q 005372 597 VELKGIGQRLADYICELRQSSPVKSLSDLEKI-GLSTKQVYNLFGKA 642 (699)
Q Consensus 597 ~~lpGIG~k~A~~Ii~~R~~~pf~~~~dL~~v-Gi~~~~~~~l~~~~ 642 (699)
..|+.--+++|+.|++..+..++-++.||.+. |+++..+-++-.++
T Consensus 13 ~~lt~~e~~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~kkL 59 (107)
T 3iwf_A 13 PYFTKNEKKIAQFILNYPHKVVNMTSQEIANQLETSSTSIIRLSKKV 59 (107)
T ss_dssp GGSCHHHHHHHHHHHHCHHHHTTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHhCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHh
Confidence 34455557888888888877788889999886 88888876665544
No 355
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=21.75 E-value=28 Score=32.11 Aligned_cols=15 Identities=33% Similarity=0.538 Sum_probs=12.9
Q ss_pred EEEeeccCCCCCcce
Q 005372 117 TVFAYGATGSGKTYT 131 (699)
Q Consensus 117 tIfAYGqTGSGKTyT 131 (699)
.|+-.|..|||||+.
T Consensus 6 ~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQ 20 (186)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 577889999999974
No 356
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=21.52 E-value=26 Score=33.30 Aligned_cols=15 Identities=27% Similarity=0.470 Sum_probs=12.0
Q ss_pred EEEeeccCCCCCcce
Q 005372 117 TVFAYGATGSGKTYT 131 (699)
Q Consensus 117 tIfAYGqTGSGKTyT 131 (699)
.|+-.|++|||||..
T Consensus 14 ~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 14 PLVVCGPSGVGKGTL 28 (204)
T ss_dssp CEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 356679999999974
No 357
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=21.46 E-value=26 Score=32.78 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=13.0
Q ss_pred EEEeeccCCCCCcce
Q 005372 117 TVFAYGATGSGKTYT 131 (699)
Q Consensus 117 tIfAYGqTGSGKTyT 131 (699)
.|+-.|..|||||+.
T Consensus 12 ~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 12 NILITGTPGTGKTSM 26 (184)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999974
No 358
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=21.41 E-value=23 Score=41.88 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=14.5
Q ss_pred EEEeeccCCCCCcceec
Q 005372 117 TVFAYGATGSGKTYTMQ 133 (699)
Q Consensus 117 tIfAYGqTGSGKTyTm~ 133 (699)
.++..|+.|||||+|+.
T Consensus 377 ~~lI~GppGTGKT~~i~ 393 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSA 393 (802)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred CEEEECCCCCCHHHHHH
Confidence 45779999999999975
No 359
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=21.32 E-value=41 Score=38.65 Aligned_cols=46 Identities=28% Similarity=0.370 Sum_probs=28.8
Q ss_pred eeeceeeCCCCCcHhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCcceecc
Q 005372 82 YQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQG 134 (699)
Q Consensus 82 F~FD~VF~~~~~sQ~~Vf~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTm~G 134 (699)
|.+..+ .+. ..|..-+. .+++.+-.|... ....|.||||||++|..
T Consensus 2 ~~~~~~-~~~-~~q~~ai~----~l~~~~~~~~~~-~~l~g~tgs~kt~~~a~ 47 (664)
T 1c4o_A 2 FRYRGP-SPK-GDQPKAIA----GLVEALRDGERF-VTLLGATGTGKTVTMAK 47 (664)
T ss_dssp CCCCSC-CCC-TTHHHHHH----HHHHHHHTTCSE-EEEEECTTSCHHHHHHH
T ss_pred CCCCCC-CCC-CCChHHHH----HHHHHHhcCCCc-EEEEcCCCcHHHHHHHH
Confidence 444444 554 36655544 356666666543 34569999999999963
No 360
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=21.29 E-value=29 Score=40.20 Aligned_cols=17 Identities=35% Similarity=0.464 Sum_probs=14.9
Q ss_pred EEEEeeccCCCCCccee
Q 005372 116 ATVFAYGATGSGKTYTM 132 (699)
Q Consensus 116 ~tIfAYGqTGSGKTyTm 132 (699)
+.++-||++|+|||++.
T Consensus 489 ~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 57899999999999864
No 361
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=21.22 E-value=30 Score=37.60 Aligned_cols=15 Identities=33% Similarity=0.220 Sum_probs=12.5
Q ss_pred EEEeeccCCCCCcce
Q 005372 117 TVFAYGATGSGKTYT 131 (699)
Q Consensus 117 tIfAYGqTGSGKTyT 131 (699)
-++..++||||||..
T Consensus 23 ~vlv~a~TGsGKT~~ 37 (459)
T 2z83_A 23 MTVLDLHPGSGKTRK 37 (459)
T ss_dssp EEEECCCTTSCTTTT
T ss_pred cEEEECCCCCCHHHH
Confidence 356779999999987
No 362
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=21.17 E-value=36 Score=31.59 Aligned_cols=18 Identities=39% Similarity=0.499 Sum_probs=14.0
Q ss_pred CEEEEeeccCCCCCccee
Q 005372 115 NATVFAYGATGSGKTYTM 132 (699)
Q Consensus 115 N~tIfAYGqTGSGKTyTm 132 (699)
...|+-.|..|||||+..
T Consensus 13 ~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 345777899999999753
No 363
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=21.01 E-value=29 Score=31.80 Aligned_cols=15 Identities=40% Similarity=0.596 Sum_probs=9.0
Q ss_pred EEEeeccCCCCCcce
Q 005372 117 TVFAYGATGSGKTYT 131 (699)
Q Consensus 117 tIfAYGqTGSGKTyT 131 (699)
.|+-.|..|||||+.
T Consensus 7 ~I~l~G~~GsGKST~ 21 (183)
T 2vli_A 7 IIWINGPFGVGKTHT 21 (183)
T ss_dssp EEEEECCC----CHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999974
No 364
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=20.94 E-value=27 Score=31.70 Aligned_cols=15 Identities=40% Similarity=0.660 Sum_probs=12.5
Q ss_pred EEEeeccCCCCCcce
Q 005372 117 TVFAYGATGSGKTYT 131 (699)
Q Consensus 117 tIfAYGqTGSGKTyT 131 (699)
.|+-.|..|||||+.
T Consensus 4 ~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 4 PIFMVGARGCGMTTV 18 (173)
T ss_dssp CEEEESCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 367789999999974
No 365
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=20.85 E-value=29 Score=41.07 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=15.0
Q ss_pred EEEEeeccCCCCCccee
Q 005372 116 ATVFAYGATGSGKTYTM 132 (699)
Q Consensus 116 ~tIfAYGqTGSGKTyTm 132 (699)
..|+-||++|+|||+..
T Consensus 589 ~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEEBSCSSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 68999999999999764
No 366
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=20.84 E-value=28 Score=40.65 Aligned_cols=25 Identities=36% Similarity=0.598 Sum_probs=18.3
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCccee
Q 005372 106 LIPGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 106 lV~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
.+..+++|.| ++..++||||||.+.
T Consensus 256 ~i~~~l~~~~--~ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 256 LAQPAINGKN--ALICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEeCCCChHHHHH
Confidence 3445567877 466789999999764
No 367
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=20.77 E-value=37 Score=31.59 Aligned_cols=30 Identities=23% Similarity=0.413 Sum_probs=22.6
Q ss_pred ccchhhhhcCCCCEEEEeeccCCCCCccee
Q 005372 103 VNPLIPGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 103 v~plV~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
..++.+.++.-...-|...|.+|+|||..+
T Consensus 17 ~~~~~~~~~~~~~~ki~v~G~~~vGKSsLi 46 (192)
T 2b6h_A 17 RGSLFSRIFGKKQMRILMVGLDAAGKTTIL 46 (192)
T ss_dssp CCCGGGGTTTTSCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhccCCccEEEEECCCCCCHHHHH
Confidence 345566666666778899999999999654
No 368
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=20.76 E-value=22 Score=40.58 Aligned_cols=19 Identities=26% Similarity=0.468 Sum_probs=15.7
Q ss_pred CEEEEeeccCCCCCcceec
Q 005372 115 NATVFAYGATGSGKTYTMQ 133 (699)
Q Consensus 115 N~tIfAYGqTGSGKTyTm~ 133 (699)
++.++..|..|||||++|.
T Consensus 15 ~~~~lV~AgaGSGKT~~l~ 33 (673)
T 1uaa_A 15 TGPCLVLAGAGSGKTRVIT 33 (673)
T ss_dssp SSEEEECCCTTSCHHHHHH
T ss_pred CCCEEEEeCCCCChHHHHH
Confidence 4567778999999999975
No 369
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=20.62 E-value=81 Score=26.90 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=23.0
Q ss_pred ccCHHHHhcCCCCcHHHHHHHHHHHhcC
Q 005372 590 TASREELVELKGIGQRLADYICELRQSS 617 (699)
Q Consensus 590 tA~~~eL~~lpGIG~k~A~~Ii~~R~~~ 617 (699)
.-+.++|..++|+|+|..+.|.+.=++.
T Consensus 40 ~~se~dLlki~n~G~KSl~EI~~~L~~~ 67 (86)
T 3k4g_A 40 QRTEVELLXTPNLGXXSLTEIXDVLASR 67 (86)
T ss_dssp HSCHHHHHTSTTCCHHHHHHHHHHHHTT
T ss_pred hCCHHHHhhccccCcccHHHHHHHHHHc
Confidence 5688899999999999999888766554
No 370
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=20.61 E-value=28 Score=34.12 Aligned_cols=17 Identities=29% Similarity=0.292 Sum_probs=13.9
Q ss_pred CCEEEEeeccCCCCCcc
Q 005372 114 RNATVFAYGATGSGKTY 130 (699)
Q Consensus 114 ~N~tIfAYGqTGSGKTy 130 (699)
.--..|-||+.|||||.
T Consensus 19 ~g~l~fiyG~MgsGKTt 35 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKST 35 (195)
T ss_dssp CCEEEEEEECTTSCHHH
T ss_pred ceEEEEEECCCCCcHHH
Confidence 34478899999999993
No 371
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=20.57 E-value=71 Score=36.53 Aligned_cols=31 Identities=29% Similarity=0.530 Sum_probs=25.5
Q ss_pred CHHHHhcCCCCcHHHHHHHHHHHhcCCCCCHHHHh
Q 005372 592 SREELVELKGIGQRLADYICELRQSSPVKSLSDLE 626 (699)
Q Consensus 592 ~~~eL~~lpGIG~k~A~~Ii~~R~~~pf~~~~dL~ 626 (699)
..-.|..|||||+.+|.++- +.+|++++||.
T Consensus 655 e~~~L~qlp~i~~~rar~L~----~~g~~s~~~l~ 685 (715)
T 2va8_A 655 ELLELVQISGVGRKRARLLY----NNGIKELGDVV 685 (715)
T ss_dssp GGHHHHTSTTCCHHHHHHHH----HTTCCSHHHHH
T ss_pred hhcchhhCCCCCHHHHHHHH----HcCCCCHHHHh
Confidence 34568999999999999874 33899999995
No 372
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=20.42 E-value=26 Score=41.98 Aligned_cols=24 Identities=38% Similarity=0.599 Sum_probs=18.0
Q ss_pred hhhhcCCCCEEEEeeccCCCCCccee
Q 005372 107 IPGIFHGRNATVFAYGATGSGKTYTM 132 (699)
Q Consensus 107 V~~vl~G~N~tIfAYGqTGSGKTyTm 132 (699)
+..+++|.|+ +..++||||||.+.
T Consensus 257 i~~il~g~~~--ll~a~TGsGKTl~~ 280 (936)
T 4a2w_A 257 AQPAINGKNA--LICAPTGSGKTFVS 280 (936)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHcCCCE--EEEeCCCchHHHHH
Confidence 3455678774 56789999999874
No 373
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=20.41 E-value=42 Score=29.48 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=27.1
Q ss_pred CCCCcHHHHHHHHHHHhcCCCCCHHHHhhc-CCCHHHHHHhhcccc
Q 005372 599 LKGIGQRLADYICELRQSSPVKSLSDLEKI-GLSTKQVYNLFGKAA 643 (699)
Q Consensus 599 lpGIG~k~A~~Ii~~R~~~pf~~~~dL~~v-Gi~~~~~~~l~~~~~ 643 (699)
|+.--+++|+.|+++.+..++-++.||.+. |+++.++-++-.++=
T Consensus 19 ls~~e~~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~kklG 64 (111)
T 2o3f_A 19 LPPSERKLADYILAHPHXAIESTVNEISALANSSDAAVIRLCXSLG 64 (111)
T ss_dssp SCHHHHHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHChHHHHhcCHHHHHHHHCCCHHHHHHHHHHcC
Confidence 334445666666666655566677777665 766666655554443
No 374
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=20.20 E-value=35 Score=35.72 Aligned_cols=28 Identities=25% Similarity=0.237 Sum_probs=21.0
Q ss_pred chhhhhcC-CC--CEEEEeeccCCCCCccee
Q 005372 105 PLIPGIFH-GR--NATVFAYGATGSGKTYTM 132 (699)
Q Consensus 105 plV~~vl~-G~--N~tIfAYGqTGSGKTyTm 132 (699)
+-+|.++. |+ ...+.-||++|||||..+
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla 139 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLS 139 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHH
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 45777775 43 356788999999999754
No 375
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=20.15 E-value=26 Score=34.32 Aligned_cols=17 Identities=29% Similarity=0.387 Sum_probs=14.1
Q ss_pred EEEEeeccCCCCCccee
Q 005372 116 ATVFAYGATGSGKTYTM 132 (699)
Q Consensus 116 ~tIfAYGqTGSGKTyTm 132 (699)
-.|+-.|+.|||||+.+
T Consensus 28 ~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35777899999999865
No 376
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=20.07 E-value=29 Score=40.39 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=20.0
Q ss_pred CCCCEEEEeeccCCCCCcceec
Q 005372 112 HGRNATVFAYGATGSGKTYTMQ 133 (699)
Q Consensus 112 ~G~N~tIfAYGqTGSGKTyTm~ 133 (699)
++.|.||+.-|.+|||||.+..
T Consensus 91 ~~~nQsIiisGESGAGKTe~tK 112 (697)
T 1lkx_A 91 SQENQCVIISGESGAGKTEASK 112 (697)
T ss_dssp HCCCEEEEEECSTTSSHHHHHH
T ss_pred cCCCcEEEecCCCCCCchhhHH
Confidence 5899999999999999998853
Done!