BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005373
(699 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q66GQ2|Y5162_ARATH Uncharacterized protein At5g41620 OS=Arabidopsis thaliana
GN=At5g41620 PE=1 SV=2
Length = 623
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 128/215 (59%), Gaps = 3/215 (1%)
Query: 199 LKTPAEVRQIYSHMKHLDQQ-VSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFL 257
LKT E+ ++ + + L++Q VS +S++ AL+ EV +R RI+EL +++ + +L+ +
Sbjct: 193 LKTSTELLKVLNRIWSLEEQHVSNISLIKALKTEVAHSRVRIKELLRYQQADRHELDSVV 252
Query: 258 RKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRY 317
++++EEK +++E E++ + + ++ + ERK R+R E ++ K+ EL++ K S
Sbjct: 253 KQLAEEKLLSKNKEVERMSSAVQSVRKALEDERKLRKRSESLHRKMARELSEVKSSLSNC 312
Query: 318 MQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESM--KLREEVDDERKMLQMAEV 375
+++ E+ K +++E +CDE AK I + E+ LK++++ ++ +L +AE
Sbjct: 313 VKELERGSKSNKMMELLCDEFAKGIKSYEEEIHGLKKKNLDKDWAGRGGGDQLVLHIAES 372
Query: 376 WREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFL 410
W +ER+QM+L + S ++KL E+E FL
Sbjct: 373 WLDERMQMRLEGGDTLNGKNRSVLDKLEVEIETFL 407
>sp|Q8CB62|CNTRB_MOUSE Centrobin OS=Mus musculus GN=Cntrob PE=2 SV=2
Length = 887
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 118/267 (44%), Gaps = 43/267 (16%)
Query: 223 SMVAALEAEVEQARTRIQELETERR----SSKKKLEHFLRKVSEEKAAWRSREH---EKI 275
++ LE E +Q RT +QE E R S +KLE + EE+ AW +EH E++
Sbjct: 310 ALTLRLEVEQQQCRT-LQEERDEARAGQLSEHRKLEALQVALQEERQAWIKQEHQLKERL 368
Query: 276 RAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIE--- 332
+A ++ +A++ RE+ N QR + + A + +R D + R+ER+ ++
Sbjct: 369 QALQEEGQAQLEREKGNSQREAQAAWETQQQFALLQTEVRRLEGDLDTVRRERDALQLEM 428
Query: 333 ----------------EVCDELAKEIGEDKAEV-EALKRESMKLREEVDDERKMLQMAEV 375
E+ +L + + E AE E R++ LR D RK LQ
Sbjct: 429 SLVQARYESQRIQMESELAVQLEQRVTERLAEAQENSLRQAASLR---DHHRKQLQELSG 485
Query: 376 WREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSS-----RSINPDIQEMKE--AEML 428
++ + +L KV + + + ++ + E L+ R + Q+++E AE++
Sbjct: 486 QHQQELAAQLAQFKVEMADREERQQQVAQDYELRLAREQARVRDLKSGNQQLEEQRAELV 545
Query: 429 R--QAAASVNIQEIKEF---TYEPPNP 450
QA + +E + T PPNP
Sbjct: 546 ERLQAMLQAHWEEANQLLSTTLLPPNP 572
>sp|Q4R914|CACO2_MACFA Calcium-binding and coiled-coil domain-containing protein 2
OS=Macaca fascicularis GN=CALCOCO2 PE=2 SV=1
Length = 398
Score = 40.8 bits (94), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 88/176 (50%), Gaps = 29/176 (16%)
Query: 197 VCLKTPAEVRQIYSHMKHL--------DQQVSAVSMVAALEAEVEQARTRIQELETERRS 248
+ + T EV +I H K L D VS + ++AE+++ + +ELET +S
Sbjct: 134 LVVTTQGEVEEIEQHNKELCKENQELKDSCVSLQKQNSDMQAELQKKQ---EELET-LQS 189
Query: 249 SKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELA 308
KKLE KV E+K W + + E ++ L ++ +RK+++++E + V E+
Sbjct: 190 INKKLE---LKVKEQKDYWETEQLEHLKKENGHLFLSLTEQRKDQKKLE----QTVEEMK 242
Query: 309 DAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVD 364
+ +A +K++EL++E D L++ + E K AL+RE +L E D
Sbjct: 243 QNETTAM---------KKQQELMDENFD-LSRRLSEKKMIYNALQREKERLEGEND 288
>sp|Q5R7H1|CACO2_PONAB Calcium-binding and coiled-coil domain-containing protein 2
OS=Pongo abelii GN=CALCOCO2 PE=2 SV=1
Length = 446
Score = 37.4 bits (85), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 95/211 (45%), Gaps = 51/211 (24%)
Query: 197 VCLKTPAEVRQIYSHMKHL--------DQQVSAVSMVAALEAEVEQARTRIQELETERRS 248
+ + T EV +I H K L D VS + ++AE+++ + +ELET +S
Sbjct: 134 LVVTTQGEVEEIEQHNKELCKENQELKDNCVSLQKQNSDMQAELQKKQ---EELET-LQS 189
Query: 249 SKKKLEHFLRKVSEEKAAWR-------------SREHEKIRAFIDDLKAEISRERKNRQR 295
KKLE KV E+K W S E+EK+ +D L+A++S + K ++
Sbjct: 190 INKKLE---LKVKEQKDYWETELLQLKEQNQKMSSENEKMGIRVDQLQAQLSTQEKEMEK 246
Query: 296 I--------------EIVNSKLVNELADAKVSAKRYMQDYEKER--------KERELIEE 333
+ + N L L + + K+ Q E+ + K++EL++E
Sbjct: 247 LVQGDQDKTEQLEQLKKENDHLFLSLTEQRKDQKKLEQTVEQMKQNETTAMKKQQELMDE 306
Query: 334 VCDELAKEIGEDKAEVEALKRESMKLREEVD 364
D L+K + E+K AL+RE +L E D
Sbjct: 307 NFD-LSKRLSENKIICNALQREKERLEGEND 336
>sp|P54697|MYOJ_DICDI Myosin-J heavy chain OS=Dictyostelium discoideum GN=myoJ PE=4 SV=2
Length = 2245
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 75/141 (53%), Gaps = 4/141 (2%)
Query: 233 EQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDD---LKAEISRE 289
E+A+ +I +LE E K KL+ L+ ++E+ + K+ + D+ L+ E+ R
Sbjct: 1231 EEAKKQINQLELELTDHKSKLQIQLQ-LTEQSNEKIKKLKGKLEEYQDEKKQLQQELERI 1289
Query: 290 RKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEV 349
++++Q +E + L+ +L K + + + ++++ ++ +EL K IG+ +AE
Sbjct: 1290 KQSKQSVEDEKNSLITQLTTVKFESTQVSTNVSHQKEKITTLKSTIEELNKSIGKLQAEQ 1349
Query: 350 EALKRESMKLREEVDDERKML 370
+ E K++ E++D+++
Sbjct: 1350 KNKDDEIRKIQFELNDQKQQF 1370
>sp|Q96G01|BICD1_HUMAN Protein bicaudal D homolog 1 OS=Homo sapiens GN=BICD1 PE=1 SV=3
Length = 975
Score = 34.7 bits (78), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 16/143 (11%)
Query: 271 EHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKEREL 330
E+E++ A + DLK +N + +E+ ++ +E+ + K R +QDY EL
Sbjct: 129 ENERLTAVVQDLK-------ENNEMVELQRIRMKDEIREYKFREARLLQDY------TEL 175
Query: 331 IEE--VCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDA 388
EE +L + +++ E E LK E + EE L+ A + +E + +L +A
Sbjct: 176 EEENITLQKLVSTLKQNQVEYEGLKHEIKRFEEETVLLNSQLEDA-IRLKEIAEHQLEEA 234
Query: 389 KVAVEQKYSQMNKLVAELEAFLS 411
++ + Q N L EL ++S
Sbjct: 235 LETLKNEREQKNNLRKELSQYIS 257
>sp|Q9UJC3|HOOK1_HUMAN Protein Hook homolog 1 OS=Homo sapiens GN=HOOK1 PE=1 SV=2
Length = 728
Score = 34.3 bits (77), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 69/158 (43%), Gaps = 37/158 (23%)
Query: 202 PAEVRQIYSHMKH------LDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEH 255
P E R+++ ++H L Q+ S + L+ ++EQ ++ ELETE+R SK+++
Sbjct: 460 PVEYREVFIRLQHENKMLRLQQEGSENERIEELQEQLEQKHRKMNELETEQRLSKERIRE 519
Query: 256 FLRKVSE----------------------------EKAAWRSREHEKIRAFIDDLKAEIS 287
+++ + EK E +K + I+DL+ +I+
Sbjct: 520 LQQQIEDLQKSLQEQGSKSEGESSSKLKQKLEAHMEKLTEVHEELQKKQELIEDLQPDIN 579
Query: 288 RERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKER 325
+N Q+I + + L + D K +RY EK R
Sbjct: 580 ---QNVQKINELEAALQKKDEDMKAMEERYKMYLEKAR 614
>sp|Q8BIL5|HOOK1_MOUSE Protein Hook homolog 1 OS=Mus musculus GN=Hook1 PE=1 SV=2
Length = 728
Score = 33.9 bits (76), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 69/158 (43%), Gaps = 37/158 (23%)
Query: 202 PAEVRQIYSHMKH------LDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEH 255
P E R+++ ++H L Q+ + + L+ ++EQ ++ ELETE+R SK+++
Sbjct: 460 PVEYREVFIRLQHENKMLRLQQEGTENERIEQLQEQLEQKHRKMNELETEQRLSKERIGE 519
Query: 256 FLRKVSE----------------------------EKAAWRSREHEKIRAFIDDLKAEIS 287
+++ + EK E +K + I+DL+ +IS
Sbjct: 520 LQQQIEDLQKSLQEQGSKSEGESSSKLKQKLEAHMEKLTEVHEELQKKQELIEDLQPDIS 579
Query: 288 RERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKER 325
+N Q+I + + L + D K +RY EK R
Sbjct: 580 ---QNAQKISELEAALQKKDEDMKAMEERYKMYLEKAR 614
>sp|Q95JS9|CC110_MACFA Coiled-coil domain-containing protein 110 OS=Macaca fascicularis
GN=CCDC110 PE=2 SV=2
Length = 833
Score = 33.5 bits (75), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 101/211 (47%), Gaps = 22/211 (10%)
Query: 182 QFSNPAMEGATKWNPVCLKTPAEVRQIYSHMKHLDQQVSAVSMVAA-LEAEVEQARTRIQ 240
+ N + +K P+ T + ++++ ++ K L V S + + L E ++ ++
Sbjct: 447 ELENENLNLKSKMKPLIFTTQSLIQKVETYEKQLKNLVEEKSTIQSKLSKTEEDSKECLK 506
Query: 241 ELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVN 300
EL+ + K + K EEK S E +++ D LK S+E K + + IVN
Sbjct: 507 ELK--KIIGKYNVLQGQNKTLEEKNIQLSLEKQQMMEAFDQLK---SKEHKTQSDMAIVN 561
Query: 301 SKLVNELADAKVSAKR----YMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRES 356
++ N L ++ A + +QD E+E++E+ +L KE + E++ + E
Sbjct: 562 NE--NNLMSIEMEAMKTNILLIQD------EKEMLEKKTHQLLKEKSSLENELKENQLEV 613
Query: 357 MKLREE----VDDERKMLQMAEVWREERVQM 383
M+L+E+ ++ +LQ+ E ++E++ +
Sbjct: 614 MQLKEKERLAKTEQETLLQIIETVKDEKLNL 644
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.127 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 264,539,760
Number of Sequences: 539616
Number of extensions: 11875028
Number of successful extensions: 51812
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 2496
Number of HSP's that attempted gapping in prelim test: 43317
Number of HSP's gapped (non-prelim): 7802
length of query: 699
length of database: 191,569,459
effective HSP length: 125
effective length of query: 574
effective length of database: 124,117,459
effective search space: 71243421466
effective search space used: 71243421466
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)