Query 005373
Match_columns 699
No_of_seqs 98 out of 121
Neff 3.4
Searched_HMMs 46136
Date Thu Mar 28 22:25:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005373.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005373hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07888 CALCOCO1: Calcium bin 97.7 0.12 2.6E-06 59.3 32.9 132 296-433 302-455 (546)
2 PF09726 Macoilin: Transmembra 97.6 0.014 2.9E-07 68.4 24.4 164 223-412 460-626 (697)
3 KOG0977 Nuclear envelope prote 97.0 0.15 3.2E-06 58.5 22.8 236 225-466 115-391 (546)
4 KOG0971 Microtubule-associated 97.0 0.18 3.9E-06 60.5 23.8 142 218-359 271-443 (1243)
5 TIGR00606 rad50 rad50. This fa 96.7 0.48 1E-05 59.0 26.4 125 281-413 840-967 (1311)
6 TIGR02169 SMC_prok_A chromosom 96.7 0.88 1.9E-05 54.2 27.2 25 384-408 435-459 (1164)
7 KOG0161 Myosin class II heavy 96.7 0.28 6.2E-06 63.1 24.0 90 225-314 966-1057(1930)
8 PF09726 Macoilin: Transmembra 96.6 0.39 8.4E-06 56.7 23.4 160 224-405 426-613 (697)
9 TIGR02169 SMC_prok_A chromosom 96.6 0.97 2.1E-05 53.9 26.8 26 228-253 292-317 (1164)
10 KOG0996 Structural maintenance 96.6 0.51 1.1E-05 58.1 24.1 179 235-413 332-516 (1293)
11 PF00038 Filament: Intermediat 96.5 0.32 6.9E-06 50.5 19.2 95 224-323 48-149 (312)
12 PF00038 Filament: Intermediat 96.3 1.5 3.2E-05 45.7 23.1 77 222-303 74-151 (312)
13 COG1196 Smc Chromosome segrega 96.3 1.6 3.4E-05 54.0 26.7 100 264-363 384-483 (1163)
14 TIGR02168 SMC_prok_B chromosom 96.3 1.8 3.9E-05 51.4 26.1 6 586-591 1098-1103(1179)
15 COG1196 Smc Chromosome segrega 96.2 2.5 5.5E-05 52.3 28.0 43 318-360 827-869 (1163)
16 PF07888 CALCOCO1: Calcium bin 96.2 3.2 7E-05 48.1 26.4 33 226-258 160-192 (546)
17 KOG0933 Structural maintenance 96.1 1.4 3E-05 53.9 23.9 162 222-413 740-901 (1174)
18 KOG0996 Structural maintenance 96.0 2.3 5E-05 52.8 25.4 161 302-463 504-703 (1293)
19 KOG0161 Myosin class II heavy 95.8 3.1 6.7E-05 54.3 26.3 120 236-355 1061-1204(1930)
20 KOG0612 Rho-associated, coiled 95.7 2.2 4.7E-05 53.1 23.9 111 228-343 466-581 (1317)
21 PF05701 WEMBL: Weak chloropla 95.5 4.1 9E-05 46.5 24.0 131 271-412 303-443 (522)
22 PRK02224 chromosome segregatio 95.5 4.9 0.00011 47.7 25.2 72 292-363 350-428 (880)
23 KOG0977 Nuclear envelope prote 95.2 4.6 9.9E-05 46.9 22.8 129 228-356 90-231 (546)
24 PHA02562 46 endonuclease subun 94.9 3.4 7.4E-05 46.1 20.6 46 307-352 257-304 (562)
25 PRK09039 hypothetical protein; 94.8 3.5 7.7E-05 44.8 19.9 140 225-412 48-187 (343)
26 PRK02224 chromosome segregatio 94.8 8.4 0.00018 45.7 24.4 8 236-243 212-219 (880)
27 KOG0971 Microtubule-associated 94.4 3.2 7E-05 50.5 19.5 124 225-364 233-356 (1243)
28 PRK11637 AmiB activator; Provi 94.1 7.9 0.00017 42.7 21.0 39 224-262 76-114 (428)
29 KOG0933 Structural maintenance 94.0 21 0.00046 44.4 26.7 139 225-363 686-852 (1174)
30 KOG0994 Extracellular matrix g 93.8 15 0.00033 46.2 23.7 29 384-412 1718-1746(1758)
31 PF13851 GAS: Growth-arrest sp 93.5 9.7 0.00021 38.7 22.7 47 201-252 10-56 (201)
32 KOG0976 Rho/Rac1-interacting s 93.4 13 0.00029 45.2 21.9 49 271-319 285-344 (1265)
33 PF12128 DUF3584: Protein of u 93.4 29 0.00062 43.6 26.4 47 223-269 635-681 (1201)
34 PF05701 WEMBL: Weak chloropla 93.1 20 0.00043 41.1 25.6 28 380-407 285-312 (522)
35 PF05667 DUF812: Protein of un 93.0 9.6 0.00021 44.7 20.1 109 300-408 358-479 (594)
36 PF12718 Tropomyosin_1: Tropom 93.0 9.3 0.0002 37.0 18.6 94 225-323 2-105 (143)
37 PF00261 Tropomyosin: Tropomyo 92.8 13 0.00028 38.2 20.3 137 221-364 90-228 (237)
38 PF12128 DUF3584: Protein of u 92.6 32 0.0007 43.2 25.1 21 225-245 623-643 (1201)
39 KOG0976 Rho/Rac1-interacting s 92.3 34 0.00074 42.0 23.1 79 294-372 273-365 (1265)
40 PRK03918 chromosome segregatio 92.2 30 0.00065 41.0 26.5 19 336-354 310-328 (880)
41 PF09727 CortBP2: Cortactin-bi 91.8 2.2 4.9E-05 43.6 11.6 74 294-367 91-175 (192)
42 PF07798 DUF1640: Protein of u 91.7 15 0.00032 36.3 18.7 66 291-358 84-156 (177)
43 KOG0163 Myosin class VI heavy 91.7 10 0.00022 45.9 18.1 93 199-293 846-940 (1259)
44 TIGR01843 type_I_hlyD type I s 91.4 22 0.00048 37.8 21.5 22 225-246 83-104 (423)
45 KOG0612 Rho-associated, coiled 91.4 38 0.00082 43.0 23.1 24 270-293 543-566 (1317)
46 KOG0982 Centrosomal protein Nu 91.3 17 0.00037 41.5 18.7 97 278-376 322-444 (502)
47 PF10174 Cast: RIM-binding pro 91.3 42 0.00092 40.8 23.3 56 335-402 543-598 (775)
48 PRK11637 AmiB activator; Provi 91.2 27 0.00059 38.6 25.5 10 650-659 403-412 (428)
49 KOG0963 Transcription factor/C 91.0 5.4 0.00012 46.9 15.0 121 220-371 232-357 (629)
50 KOG0964 Structural maintenance 90.9 27 0.00059 43.4 20.9 31 377-407 412-442 (1200)
51 PF06705 SF-assemblin: SF-asse 90.9 22 0.00047 36.7 21.0 69 270-340 92-161 (247)
52 KOG0994 Extracellular matrix g 90.8 35 0.00077 43.3 21.8 44 319-362 1598-1641(1758)
53 PF04111 APG6: Autophagy prote 90.8 2 4.3E-05 46.2 10.7 62 313-374 51-113 (314)
54 KOG1103 Predicted coiled-coil 90.8 7.1 0.00015 43.6 14.9 160 221-412 105-291 (561)
55 PF10174 Cast: RIM-binding pro 90.7 48 0.001 40.4 24.7 161 203-363 301-488 (775)
56 KOG0980 Actin-binding protein 90.6 52 0.0011 40.7 23.0 112 224-346 366-479 (980)
57 PF11559 ADIP: Afadin- and alp 90.6 9.8 0.00021 36.2 14.1 53 201-253 29-82 (151)
58 PF10186 Atg14: UV radiation r 90.3 23 0.00049 36.1 19.5 16 274-289 74-89 (302)
59 KOG4593 Mitotic checkpoint pro 90.1 21 0.00045 42.8 18.7 196 203-411 359-573 (716)
60 KOG4787 Uncharacterized conser 89.8 7 0.00015 46.0 14.4 127 224-382 333-459 (852)
61 TIGR00606 rad50 rad50. This fa 89.5 72 0.0016 40.6 28.0 27 230-256 836-862 (1311)
62 PF09728 Taxilin: Myosin-like 89.4 19 0.00042 38.9 16.7 44 320-363 65-108 (309)
63 COG1340 Uncharacterized archae 89.4 37 0.00079 37.1 21.9 45 320-364 166-210 (294)
64 PRK04863 mukB cell division pr 89.3 50 0.0011 42.9 22.6 20 671-690 794-813 (1486)
65 KOG0239 Kinesin (KAR3 subfamil 89.1 22 0.00047 42.5 18.2 138 269-412 174-315 (670)
66 PRK03918 chromosome segregatio 89.0 57 0.0012 38.8 26.2 10 203-212 145-154 (880)
67 PF05615 THOC7: Tho complex su 88.9 13 0.00029 35.0 13.5 33 223-255 46-78 (139)
68 PF09731 Mitofilin: Mitochondr 88.8 49 0.0011 37.9 22.9 42 203-244 226-272 (582)
69 PRK04778 septation ring format 88.8 52 0.0011 38.1 22.4 52 272-323 284-335 (569)
70 KOG0995 Centromere-associated 88.7 58 0.0013 38.5 23.0 113 226-343 269-391 (581)
71 KOG0579 Ste20-like serine/thre 88.6 64 0.0014 39.3 21.1 80 321-412 1090-1171(1187)
72 KOG0250 DNA repair protein RAD 87.8 87 0.0019 39.5 23.3 12 588-599 608-621 (1074)
73 PF07798 DUF1640: Protein of u 87.3 22 0.00048 35.1 14.5 94 223-320 58-153 (177)
74 KOG4674 Uncharacterized conser 87.2 51 0.0011 43.5 20.7 21 257-277 1280-1300(1822)
75 PF12325 TMF_TATA_bd: TATA ele 87.1 29 0.00062 33.2 14.5 40 223-262 23-62 (120)
76 KOG0964 Structural maintenance 86.6 99 0.0021 38.9 23.8 91 227-321 255-351 (1200)
77 PF10168 Nup88: Nuclear pore c 86.5 31 0.00067 41.4 17.5 90 225-323 567-664 (717)
78 TIGR01000 bacteriocin_acc bact 86.4 61 0.0013 36.2 22.6 25 224-248 98-122 (457)
79 PF10186 Atg14: UV radiation r 86.3 34 0.00074 34.8 15.7 97 329-440 66-162 (302)
80 KOG0250 DNA repair protein RAD 86.1 1.1E+02 0.0023 38.8 25.0 49 203-254 197-245 (1074)
81 TIGR03185 DNA_S_dndD DNA sulfu 86.0 78 0.0017 37.1 24.4 64 586-657 563-629 (650)
82 COG2433 Uncharacterized conser 85.9 26 0.00056 41.6 16.0 23 389-411 487-509 (652)
83 PRK04863 mukB cell division pr 85.4 1.3E+02 0.0029 39.3 24.0 13 571-583 687-700 (1486)
84 COG4942 Membrane-bound metallo 85.4 75 0.0016 36.3 23.5 36 322-357 143-178 (420)
85 PF15035 Rootletin: Ciliary ro 85.0 46 0.001 33.7 17.4 93 221-325 14-122 (182)
86 PF09730 BicD: Microtubule-ass 84.6 79 0.0017 38.3 19.5 111 295-413 73-186 (717)
87 PF05010 TACC: Transforming ac 84.3 55 0.0012 34.0 22.8 26 302-327 80-105 (207)
88 PF08647 BRE1: BRE1 E3 ubiquit 84.1 30 0.00066 31.3 12.6 68 252-324 28-95 (96)
89 COG1842 PspA Phage shock prote 83.7 61 0.0013 33.9 18.0 73 225-322 33-105 (225)
90 PF01576 Myosin_tail_1: Myosin 83.6 0.34 7.3E-06 58.2 -0.0 142 204-352 673-818 (859)
91 KOG1853 LIS1-interacting prote 82.8 77 0.0017 34.5 18.3 111 214-343 36-147 (333)
92 PF00901 Orbi_VP5: Orbivirus o 82.6 19 0.00042 41.6 12.9 19 404-422 275-294 (508)
93 KOG4807 F-actin binding protei 82.3 82 0.0018 36.1 17.3 45 214-264 376-423 (593)
94 KOG1029 Endocytic adaptor prot 82.0 1.4E+02 0.003 36.9 21.1 64 294-357 444-510 (1118)
95 PF01576 Myosin_tail_1: Myosin 81.8 0.44 9.6E-06 57.2 0.0 127 225-351 358-486 (859)
96 PF06705 SF-assemblin: SF-asse 81.6 69 0.0015 33.1 24.0 175 251-434 12-215 (247)
97 PF10473 CENP-F_leu_zip: Leuci 81.3 58 0.0012 32.0 18.1 35 225-259 12-46 (140)
98 KOG0993 Rab5 GTPase effector R 81.3 34 0.00073 39.2 14.0 128 225-358 40-173 (542)
99 COG0419 SbcC ATPase involved i 80.9 1.4E+02 0.0031 36.4 25.0 15 279-293 568-582 (908)
100 KOG4643 Uncharacterized coiled 80.8 1.7E+02 0.0037 37.1 22.5 209 222-448 473-716 (1195)
101 PF04156 IncA: IncA protein; 80.8 59 0.0013 31.8 14.9 15 230-244 81-95 (191)
102 PF14915 CCDC144C: CCDC144C pr 80.7 96 0.0021 34.2 21.5 162 225-393 8-196 (305)
103 cd07673 F-BAR_FCHO2 The F-BAR 80.7 81 0.0018 33.4 18.1 43 292-338 155-198 (269)
104 cd07651 F-BAR_PombeCdc15_like 80.6 71 0.0015 32.6 19.1 110 272-393 55-167 (236)
105 PF07926 TPR_MLP1_2: TPR/MLP1/ 80.6 53 0.0011 31.1 17.3 70 225-294 5-76 (132)
106 cd07658 F-BAR_NOSTRIN The F-BA 80.1 49 0.0011 34.3 14.0 10 223-232 80-89 (239)
107 PRK04778 septation ring format 80.0 1.2E+02 0.0027 35.1 27.4 47 223-269 256-307 (569)
108 KOG0980 Actin-binding protein 79.1 1.8E+02 0.0039 36.4 22.6 40 279-318 447-486 (980)
109 TIGR00634 recN DNA repair prot 78.5 1.4E+02 0.0029 34.6 19.0 36 227-262 165-200 (563)
110 PRK00409 recombination and DNA 78.3 36 0.00079 41.1 14.1 15 99-113 341-355 (782)
111 PF08317 Spc7: Spc7 kinetochor 78.1 92 0.002 33.6 15.8 120 231-367 108-229 (325)
112 PF04849 HAP1_N: HAP1 N-termin 77.7 1.2E+02 0.0026 33.5 17.1 186 214-412 88-301 (306)
113 PF14197 Cep57_CLD_2: Centroso 77.6 25 0.00054 30.6 9.2 61 223-288 5-65 (69)
114 TIGR01069 mutS2 MutS2 family p 77.6 33 0.00071 41.4 13.4 61 227-287 522-582 (771)
115 KOG4661 Hsp27-ERE-TATA-binding 77.0 23 0.00049 41.9 11.4 14 319-332 663-676 (940)
116 KOG0995 Centromere-associated 77.0 1.7E+02 0.0036 34.9 25.6 63 230-292 294-361 (581)
117 PRK01156 chromosome segregatio 77.0 1.8E+02 0.0039 35.2 25.0 29 227-255 194-222 (895)
118 KOG0163 Myosin class VI heavy 76.9 82 0.0018 38.8 15.9 24 190-213 862-885 (1259)
119 TIGR02231 conserved hypothetic 76.9 30 0.00065 39.2 12.3 67 224-292 72-146 (525)
120 PF06428 Sec2p: GDP/GTP exchan 76.6 7.7 0.00017 35.9 6.3 69 284-352 1-70 (100)
121 KOG0249 LAR-interacting protei 76.3 1.7E+02 0.0037 35.9 18.2 70 314-389 218-287 (916)
122 PF05911 DUF869: Plant protein 76.1 2E+02 0.0043 35.4 19.2 127 222-355 588-716 (769)
123 KOG4466 Component of histone d 75.6 86 0.0019 34.3 14.4 85 247-355 19-105 (291)
124 KOG0963 Transcription factor/C 75.5 1.9E+02 0.0041 34.8 25.0 44 364-409 289-343 (629)
125 PF10473 CENP-F_leu_zip: Leuci 75.2 88 0.0019 30.8 15.9 89 224-324 25-116 (140)
126 PRK00409 recombination and DNA 75.2 1E+02 0.0022 37.4 16.6 16 252-267 517-532 (782)
127 PF04108 APG17: Autophagy prot 75.1 99 0.0021 34.6 15.5 35 311-345 345-379 (412)
128 PF05266 DUF724: Protein of un 74.9 1E+02 0.0022 31.4 15.9 20 340-359 159-178 (190)
129 PF08317 Spc7: Spc7 kinetochor 74.7 1.3E+02 0.0028 32.5 18.5 66 274-342 181-246 (325)
130 PF07200 Mod_r: Modifier of ru 74.5 80 0.0017 30.0 17.0 129 200-355 4-132 (150)
131 PRK01156 chromosome segregatio 74.3 2.1E+02 0.0045 34.7 26.0 24 227-250 473-496 (895)
132 PF05837 CENP-H: Centromere pr 74.1 59 0.0013 30.1 11.3 43 269-311 2-44 (106)
133 PF15254 CCDC14: Coiled-coil d 74.0 1.2E+02 0.0026 37.3 16.4 123 272-409 382-520 (861)
134 KOG1029 Endocytic adaptor prot 73.6 2.4E+02 0.0052 35.1 22.7 27 518-544 738-764 (1118)
135 COG4942 Membrane-bound metallo 73.0 1.8E+02 0.0039 33.4 19.3 29 295-323 147-175 (420)
136 KOG1850 Myosin-like coiled-coi 72.8 1.4E+02 0.0031 33.4 15.5 118 269-405 21-138 (391)
137 KOG3915 Transcription regulato 72.1 28 0.0006 40.3 10.3 58 226-302 510-567 (641)
138 cd07653 F-BAR_CIP4-like The F- 72.0 1.2E+02 0.0026 30.9 17.8 81 280-360 94-174 (251)
139 PRK10884 SH3 domain-containing 71.9 75 0.0016 32.8 12.6 25 221-245 91-115 (206)
140 COG2433 Uncharacterized conser 71.7 56 0.0012 38.9 12.9 51 271-321 451-504 (652)
141 PTZ00266 NIMA-related protein 71.4 46 0.00099 41.7 12.8 16 99-114 268-283 (1021)
142 KOG4674 Uncharacterized conser 71.3 3.7E+02 0.008 36.2 23.5 25 221-245 1276-1300(1822)
143 PF13863 DUF4200: Domain of un 70.8 85 0.0018 28.7 14.3 51 302-359 50-100 (126)
144 PF09731 Mitofilin: Mitochondr 70.8 2E+02 0.0044 33.1 22.4 10 55-64 86-95 (582)
145 PRK14154 heat shock protein Gr 70.4 88 0.0019 32.6 12.7 56 218-273 47-102 (208)
146 TIGR03185 DNA_S_dndD DNA sulfu 70.4 2.3E+02 0.0049 33.4 19.3 27 235-261 389-415 (650)
147 PF02970 TBCA: Tubulin binding 70.3 47 0.001 30.0 9.6 83 332-423 6-88 (90)
148 PF06818 Fez1: Fez1; InterPro 70.2 1.4E+02 0.0031 31.1 18.1 105 297-410 83-200 (202)
149 PF05622 HOOK: HOOK protein; 70.0 1.5 3.2E-05 51.6 0.0 64 300-363 234-300 (713)
150 PF08614 ATG16: Autophagy prot 69.9 91 0.002 31.2 12.5 85 223-312 102-186 (194)
151 PF04111 APG6: Autophagy prote 69.9 89 0.0019 33.9 13.3 15 223-237 9-23 (314)
152 PF13851 GAS: Growth-arrest sp 69.4 1.4E+02 0.003 30.6 17.4 114 296-413 53-173 (201)
153 PF04156 IncA: IncA protein; 68.8 1.2E+02 0.0026 29.6 16.1 18 342-359 160-177 (191)
154 PF14931 IFT20: Intraflagellar 68.5 75 0.0016 30.4 11.0 81 327-411 21-108 (120)
155 PF14662 CCDC155: Coiled-coil 68.3 1.6E+02 0.0034 30.7 21.9 24 390-413 133-156 (193)
156 PF03962 Mnd1: Mnd1 family; I 67.8 1.1E+02 0.0024 30.9 12.7 16 344-359 132-147 (188)
157 PRK10698 phage shock protein P 67.2 85 0.0018 32.5 12.0 94 275-389 29-133 (222)
158 smart00498 FH2 Formin Homology 66.9 64 0.0014 36.0 11.8 114 225-338 312-431 (432)
159 TIGR01069 mutS2 MutS2 family p 66.8 1.8E+02 0.004 35.4 16.2 19 249-267 509-527 (771)
160 KOG3433 Protein involved in me 66.6 1.7E+02 0.0037 30.5 15.5 122 232-360 7-143 (203)
161 PF10267 Tmemb_cc2: Predicted 66.5 1.9E+02 0.0041 32.9 15.2 41 316-359 248-288 (395)
162 KOG0978 E3 ubiquitin ligase in 66.4 59 0.0013 39.2 11.9 88 225-312 526-622 (698)
163 KOG0239 Kinesin (KAR3 subfamil 66.4 2.1E+02 0.0044 34.6 16.3 42 220-261 179-220 (670)
164 TIGR01000 bacteriocin_acc bact 66.1 2.3E+02 0.0049 31.8 19.9 20 382-401 297-316 (457)
165 KOG4403 Cell surface glycoprot 66.0 2.1E+02 0.0045 33.4 15.4 10 522-531 476-485 (575)
166 TIGR02680 conserved hypothetic 65.8 4E+02 0.0087 34.6 24.7 26 379-404 924-949 (1353)
167 KOG3470 Beta-tubulin folding c 64.6 85 0.0018 29.9 10.2 90 332-430 12-101 (107)
168 PRK12704 phosphodiesterase; Pr 64.4 2.8E+02 0.0061 32.3 18.0 14 290-303 89-102 (520)
169 PF10168 Nup88: Nuclear pore c 64.4 3.3E+02 0.0072 33.1 19.2 18 246-263 556-573 (717)
170 PF05103 DivIVA: DivIVA protei 64.3 5.2 0.00011 36.5 2.4 37 327-363 87-123 (131)
171 KOG4572 Predicted DNA-binding 63.8 3.9E+02 0.0084 33.7 18.4 42 367-412 1066-1107(1424)
172 PF05700 BCAS2: Breast carcino 63.6 1.8E+02 0.004 29.9 17.2 114 225-349 99-212 (221)
173 PF05615 THOC7: Tho complex su 63.6 1.3E+02 0.0028 28.5 11.6 59 297-355 45-103 (139)
174 COG4717 Uncharacterized conser 63.4 3.9E+02 0.0085 33.6 25.7 93 198-292 155-248 (984)
175 cd07648 F-BAR_FCHO The F-BAR ( 63.1 1.9E+02 0.0041 29.9 19.2 15 423-437 222-236 (261)
176 PRK10869 recombination and rep 62.8 3E+02 0.0066 32.1 20.5 34 228-261 162-195 (553)
177 PF14942 Muted: Organelle biog 62.4 1.7E+02 0.0036 29.0 15.2 54 250-303 20-75 (145)
178 PF05010 TACC: Transforming ac 62.1 2E+02 0.0044 29.9 18.3 29 315-343 178-206 (207)
179 PRK14140 heat shock protein Gr 61.9 1.9E+02 0.0041 29.8 13.1 47 222-268 36-82 (191)
180 KOG4364 Chromatin assembly fac 61.9 2.8E+02 0.006 33.9 15.9 42 287-328 296-337 (811)
181 PF14197 Cep57_CLD_2: Centroso 61.1 73 0.0016 27.8 8.6 16 340-355 47-62 (69)
182 PF09763 Sec3_C: Exocyst compl 61.1 93 0.002 36.8 12.3 94 296-412 3-97 (701)
183 PRK10929 putative mechanosensi 60.9 4.7E+02 0.01 33.7 21.8 119 223-353 173-313 (1109)
184 PF02185 HR1: Hr1 repeat; Int 60.8 37 0.0008 28.7 6.7 57 296-353 3-60 (70)
185 cd09238 V_Alix_like_1 Protein- 60.8 2.5E+02 0.0055 30.6 17.9 18 396-413 322-339 (339)
186 PRK00106 hypothetical protein; 60.8 3.4E+02 0.0074 32.1 17.6 7 423-429 243-249 (535)
187 KOG1962 B-cell receptor-associ 60.5 94 0.002 32.7 10.8 62 303-364 149-210 (216)
188 PF05837 CENP-H: Centromere pr 60.4 1E+02 0.0022 28.5 10.0 28 316-343 62-89 (106)
189 PF09727 CortBP2: Cortactin-bi 60.1 1.6E+02 0.0035 30.5 12.3 81 230-326 107-190 (192)
190 KOG1265 Phospholipase C [Lipid 60.1 4.6E+02 0.01 33.3 18.9 66 344-412 1113-1179(1189)
191 PF14915 CCDC144C: CCDC144C pr 60.0 2.2E+02 0.0047 31.5 13.7 110 223-347 179-292 (305)
192 KOG2002 TPR-containing nuclear 59.3 3.8E+02 0.0082 34.0 16.9 75 199-283 712-786 (1018)
193 PF01442 Apolipoprotein: Apoli 59.3 1.5E+02 0.0033 27.6 20.0 15 331-345 135-149 (202)
194 KOG0804 Cytoplasmic Zn-finger 59.0 2.1E+02 0.0045 33.4 13.8 106 295-414 348-455 (493)
195 PF13514 AAA_27: AAA domain 58.8 4.7E+02 0.01 33.0 27.0 37 226-262 614-650 (1111)
196 PF15070 GOLGA2L5: Putative go 58.7 3.9E+02 0.0085 32.1 25.1 128 226-353 83-215 (617)
197 KOG0804 Cytoplasmic Zn-finger 58.4 3.2E+02 0.0069 32.0 15.1 64 230-307 347-412 (493)
198 PF05667 DUF812: Protein of un 57.8 4E+02 0.0086 31.9 23.4 42 224-265 329-370 (594)
199 PF11932 DUF3450: Protein of u 57.5 2.4E+02 0.0052 29.2 17.2 101 230-345 21-121 (251)
200 KOG0288 WD40 repeat protein Ti 57.5 2.9E+02 0.0064 32.0 14.6 33 363-395 107-139 (459)
201 COG1340 Uncharacterized archae 56.6 3.1E+02 0.0067 30.3 21.0 64 223-291 34-97 (294)
202 PF09744 Jnk-SapK_ap_N: JNK_SA 55.6 2.3E+02 0.0049 28.4 14.4 52 222-273 28-79 (158)
203 PF06428 Sec2p: GDP/GTP exchan 55.4 73 0.0016 29.7 8.2 63 231-311 2-64 (100)
204 PF03245 Phage_lysis: Bacterio 55.3 79 0.0017 30.1 8.6 68 269-337 6-73 (125)
205 PF08549 SWI-SNF_Ssr4: Fungal 55.3 16 0.00034 43.6 4.7 85 329-413 360-464 (669)
206 KOG0018 Structural maintenance 55.1 4.9E+02 0.011 33.4 17.0 27 307-333 312-338 (1141)
207 COG1579 Zn-ribbon protein, pos 55.0 2.9E+02 0.0064 29.5 17.2 30 224-253 32-61 (239)
208 PF11932 DUF3450: Protein of u 55.0 2.6E+02 0.0057 28.9 16.2 33 325-357 62-94 (251)
209 PF14523 Syntaxin_2: Syntaxin- 54.9 1.4E+02 0.0031 26.1 9.7 67 236-325 32-98 (102)
210 PF09304 Cortex-I_coil: Cortex 54.8 2E+02 0.0044 27.5 14.9 71 223-298 16-86 (107)
211 PRK10246 exonuclease subunit S 54.7 5.4E+02 0.012 32.4 23.7 11 619-629 1021-1031(1047)
212 PRK14143 heat shock protein Gr 54.2 2.6E+02 0.0057 29.7 13.0 69 225-321 69-137 (238)
213 cd07636 BAR_GRAF The Bin/Amphi 54.0 2.8E+02 0.0061 29.0 16.6 58 366-428 91-148 (207)
214 PF06785 UPF0242: Uncharacteri 54.0 3.8E+02 0.0082 30.4 16.6 73 283-355 91-170 (401)
215 COG4477 EzrA Negative regulato 53.8 4.6E+02 0.0099 31.4 17.9 126 216-350 262-399 (570)
216 KOG4643 Uncharacterized coiled 53.8 6E+02 0.013 32.7 22.5 64 296-359 490-556 (1195)
217 KOG4348 Adaptor protein CMS/SE 53.6 55 0.0012 37.9 8.3 55 229-305 568-622 (627)
218 PRK09039 hypothetical protein; 53.5 3.4E+02 0.0075 29.9 18.9 35 273-307 56-90 (343)
219 PRK00106 hypothetical protein; 53.2 4.5E+02 0.0098 31.1 25.8 32 379-412 161-192 (535)
220 KOG0978 E3 ubiquitin ligase in 53.1 5.2E+02 0.011 31.7 24.2 127 227-360 397-530 (698)
221 PRK14151 heat shock protein Gr 53.0 2.6E+02 0.0057 28.3 12.5 46 222-267 19-64 (176)
222 cd07652 F-BAR_Rgd1 The F-BAR ( 52.3 2.9E+02 0.0063 28.7 19.3 101 279-408 95-197 (234)
223 PF09787 Golgin_A5: Golgin sub 52.1 4.3E+02 0.0093 30.5 23.6 36 254-289 158-193 (511)
224 PRK13454 F0F1 ATP synthase sub 52.1 2.6E+02 0.0056 28.0 17.3 87 225-317 53-139 (181)
225 PF00901 Orbi_VP5: Orbivirus o 51.9 4.7E+02 0.01 30.9 16.3 15 236-250 90-104 (508)
226 PRK14139 heat shock protein Gr 51.6 1.1E+02 0.0025 31.2 9.6 66 225-318 34-99 (185)
227 KOG4673 Transcription factor T 50.9 5.7E+02 0.012 31.7 23.9 50 240-289 419-468 (961)
228 PF13514 AAA_27: AAA domain 50.3 6.3E+02 0.014 31.9 24.8 72 226-303 739-810 (1111)
229 PF07106 TBPIP: Tat binding pr 49.4 2.4E+02 0.0052 27.5 11.2 44 222-265 71-114 (169)
230 PF15294 Leu_zip: Leucine zipp 49.3 3.9E+02 0.0085 29.3 15.1 82 225-326 134-218 (278)
231 TIGR03752 conj_TIGR03752 integ 49.1 2.1E+02 0.0045 33.4 12.1 59 225-291 61-119 (472)
232 PRK14146 heat shock protein Gr 49.0 3.1E+02 0.0068 28.7 12.4 64 224-287 55-118 (215)
233 smart00787 Spc7 Spc7 kinetocho 48.7 4E+02 0.0087 29.2 17.3 51 275-328 177-227 (312)
234 PF15294 Leu_zip: Leucine zipp 48.6 4E+02 0.0087 29.2 18.3 119 277-411 132-250 (278)
235 PF06005 DUF904: Protein of un 48.5 1.3E+02 0.0028 26.5 8.2 61 214-282 9-69 (72)
236 KOG0288 WD40 repeat protein Ti 48.4 5E+02 0.011 30.2 15.3 32 305-336 100-131 (459)
237 PF13747 DUF4164: Domain of un 48.2 2.1E+02 0.0046 25.9 10.5 48 302-349 36-83 (89)
238 PRK14158 heat shock protein Gr 47.9 1.7E+02 0.0036 30.2 10.1 69 223-319 40-108 (194)
239 PRK14145 heat shock protein Gr 47.5 3.5E+02 0.0075 28.1 12.6 65 223-287 45-109 (196)
240 PRK14156 heat shock protein Gr 47.4 3.1E+02 0.0067 28.0 11.8 65 227-319 31-95 (177)
241 PF09787 Golgin_A5: Golgin sub 47.3 4E+02 0.0086 30.8 14.1 27 230-256 109-135 (511)
242 PF13863 DUF4200: Domain of un 46.8 2.3E+02 0.005 25.9 16.8 109 228-337 12-120 (126)
243 PRK12704 phosphodiesterase; Pr 46.8 5.4E+02 0.012 30.1 19.2 13 277-289 64-76 (520)
244 PRK10884 SH3 domain-containing 46.6 3E+02 0.0066 28.5 11.8 29 296-324 137-165 (206)
245 PF13935 Ead_Ea22: Ead/Ea22-li 46.6 2.2E+02 0.0048 27.4 10.2 25 221-245 65-89 (139)
246 PF07083 DUF1351: Protein of u 46.4 2E+02 0.0044 29.6 10.5 69 270-338 42-124 (215)
247 cd07605 I-BAR_IMD Inverse (I)- 45.8 3.8E+02 0.0083 28.1 18.1 140 201-350 62-210 (223)
248 PRK09174 F0F1 ATP synthase sub 45.8 3.6E+02 0.0077 27.8 18.2 65 225-289 75-139 (204)
249 PRK14162 heat shock protein Gr 45.5 3.7E+02 0.0079 27.8 12.9 46 224-269 40-85 (194)
250 PF13935 Ead_Ea22: Ead/Ea22-li 45.4 1.8E+02 0.0039 28.0 9.4 20 326-345 119-138 (139)
251 PRK03598 putative efflux pump 45.1 3.9E+02 0.0085 28.3 12.8 51 274-324 111-164 (331)
252 KOG0999 Microtubule-associated 45.0 6.4E+02 0.014 30.5 22.0 102 296-412 147-258 (772)
253 PF14932 HAUS-augmin3: HAUS au 45.0 3.1E+02 0.0067 28.9 11.8 82 270-354 68-149 (256)
254 PF01025 GrpE: GrpE; InterPro 44.6 66 0.0014 30.8 6.4 50 225-274 13-62 (165)
255 KOG2264 Exostosin EXT1L [Signa 44.6 1.1E+02 0.0024 36.6 9.2 27 337-363 104-130 (907)
256 KOG0018 Structural maintenance 44.1 8.3E+02 0.018 31.6 23.6 26 301-326 327-352 (1141)
257 COG3883 Uncharacterized protei 43.9 4.6E+02 0.01 28.6 19.3 30 383-412 158-187 (265)
258 PF03938 OmpH: Outer membrane 43.6 2.9E+02 0.0062 26.1 10.6 56 225-287 38-93 (158)
259 PF12210 Hrs_helical: Hepatocy 43.3 2.9E+02 0.0063 26.1 11.3 82 205-297 11-95 (96)
260 PF04871 Uso1_p115_C: Uso1 / p 43.1 3.2E+02 0.007 26.5 14.3 38 335-374 57-95 (136)
261 PF09432 THP2: Tho complex sub 42.8 1.4E+02 0.003 29.5 8.1 22 382-403 67-88 (132)
262 PF07058 Myosin_HC-like: Myosi 42.7 4E+02 0.0087 29.9 12.4 18 672-689 310-327 (351)
263 cd07674 F-BAR_FCHO1 The F-BAR 42.7 4.2E+02 0.0092 27.8 21.9 186 199-418 55-252 (261)
264 KOG4466 Component of histone d 42.5 2.1E+02 0.0045 31.5 10.2 54 248-309 39-92 (291)
265 PLN02372 violaxanthin de-epoxi 42.5 3E+02 0.0064 31.9 11.8 53 280-334 382-437 (455)
266 PRK09174 F0F1 ATP synthase sub 42.5 4E+02 0.0086 27.4 16.4 74 282-355 89-164 (204)
267 PRK06231 F0F1 ATP synthase sub 42.1 4E+02 0.0086 27.3 16.4 71 285-355 87-159 (205)
268 PF03962 Mnd1: Mnd1 family; I 42.1 3.9E+02 0.0084 27.2 11.9 11 199-209 29-39 (188)
269 PRK10476 multidrug resistance 42.0 4.6E+02 0.01 28.0 15.5 21 225-245 88-108 (346)
270 PRK10361 DNA recombination pro 41.7 6.4E+02 0.014 29.6 18.7 40 327-366 134-173 (475)
271 PF14712 Snapin_Pallidin: Snap 41.7 2.4E+02 0.0052 24.7 10.9 75 222-303 6-80 (92)
272 COG1842 PspA Phage shock prote 41.6 4.4E+02 0.0096 27.7 20.1 112 275-392 29-145 (225)
273 KOG4460 Nuclear pore complex, 41.4 3.1E+02 0.0066 33.0 11.9 58 317-374 600-657 (741)
274 PRK13454 F0F1 ATP synthase sub 41.1 3.8E+02 0.0082 26.8 14.5 71 284-354 69-141 (181)
275 PRK04654 sec-independent trans 41.1 1.9E+02 0.0042 30.5 9.4 30 297-326 26-55 (214)
276 PRK14153 heat shock protein Gr 41.0 3.8E+02 0.0083 27.7 11.5 67 225-319 35-101 (194)
277 COG1579 Zn-ribbon protein, pos 40.9 4.8E+02 0.01 27.9 21.3 121 225-355 12-132 (239)
278 KOG0993 Rab5 GTPase effector R 40.8 6.5E+02 0.014 29.4 16.3 126 223-355 345-491 (542)
279 PRK13428 F0F1 ATP synthase sub 40.3 6.1E+02 0.013 28.9 16.7 70 286-355 41-112 (445)
280 PF05529 Bap31: B-cell recepto 40.1 1.3E+02 0.0027 29.9 7.8 23 341-363 169-191 (192)
281 KOG4403 Cell surface glycoprot 39.8 1.9E+02 0.0041 33.7 9.8 24 300-323 304-327 (575)
282 PF15254 CCDC14: Coiled-coil d 39.8 8.6E+02 0.019 30.5 18.8 81 239-319 389-476 (861)
283 PRK14147 heat shock protein Gr 39.5 1.8E+02 0.0039 29.3 8.8 67 225-319 20-86 (172)
284 PF05557 MAD: Mitotic checkpoi 39.4 59 0.0013 38.6 6.3 62 225-286 359-429 (722)
285 KOG4421 Uncharacterized conser 39.3 1.7E+02 0.0036 33.6 9.2 123 207-354 32-173 (637)
286 PF14073 Cep57_CLD: Centrosome 39.2 4.5E+02 0.0098 27.1 19.1 149 224-390 2-164 (178)
287 PF09755 DUF2046: Uncharacteri 38.8 6E+02 0.013 28.4 20.3 126 226-359 37-168 (310)
288 cd07675 F-BAR_FNBP1L The F-BAR 38.7 4.9E+02 0.011 27.9 12.2 40 280-322 98-137 (252)
289 PF14739 DUF4472: Domain of un 38.6 2.7E+02 0.0058 26.6 9.2 79 214-328 22-100 (108)
290 KOG2398 Predicted proline-seri 37.9 8E+02 0.017 29.6 20.2 72 350-439 156-227 (611)
291 PF15175 SPATA24: Spermatogene 37.3 4.6E+02 0.0099 26.6 12.9 85 250-342 2-86 (153)
292 PF00769 ERM: Ezrin/radixin/mo 37.1 5.2E+02 0.011 27.2 15.0 43 337-394 79-121 (246)
293 KOG0249 LAR-interacting protei 37.1 9.3E+02 0.02 30.1 19.5 74 449-531 421-494 (916)
294 COG5293 Predicted ATPase [Gene 36.7 7.9E+02 0.017 29.2 16.4 153 226-382 258-435 (591)
295 cd07625 BAR_Vps17p The Bin/Amp 36.1 3E+02 0.0066 29.0 10.1 13 321-333 214-226 (230)
296 TIGR00634 recN DNA repair prot 36.0 7.5E+02 0.016 28.7 21.9 29 326-354 277-308 (563)
297 KOG3612 PHD Zn-finger protein 36.0 2.6E+02 0.0057 33.3 10.4 36 291-326 464-503 (588)
298 PF09636 XkdW: XkdW protein; 35.9 12 0.00026 35.4 0.0 39 278-316 66-104 (108)
299 KOG1937 Uncharacterized conser 35.4 8.1E+02 0.018 28.9 18.5 112 232-344 339-470 (521)
300 KOG1962 B-cell receptor-associ 34.7 4.2E+02 0.0092 28.1 10.8 59 296-354 149-207 (216)
301 PF05700 BCAS2: Breast carcino 34.4 4.9E+02 0.011 26.8 11.2 34 225-258 145-178 (221)
302 KOG0247 Kinesin-like protein [ 34.3 6.2E+02 0.013 31.4 13.2 97 254-354 492-588 (809)
303 PF09798 LCD1: DNA damage chec 34.2 1.1E+02 0.0023 37.0 7.1 49 236-292 3-51 (654)
304 KOG1916 Nuclear protein, conta 34.1 1.1E+03 0.025 30.3 23.0 129 288-437 922-1057(1283)
305 KOG0946 ER-Golgi vesicle-tethe 34.1 1.1E+03 0.023 30.0 17.4 88 227-314 650-750 (970)
306 cd07657 F-BAR_Fes_Fer The F-BA 34.0 5.8E+02 0.012 26.8 22.4 39 220-259 6-48 (237)
307 COG3524 KpsE Capsule polysacch 33.8 4.5E+02 0.0097 29.7 11.1 38 207-244 206-244 (372)
308 KOG0962 DNA repair protein RAD 33.7 1.3E+03 0.027 30.6 24.1 100 313-412 914-1030(1294)
309 PRK14155 heat shock protein Gr 33.6 5.8E+02 0.013 26.7 12.2 92 226-345 16-113 (208)
310 cd07658 F-BAR_NOSTRIN The F-BA 33.6 5.7E+02 0.012 26.6 20.2 82 273-364 58-140 (239)
311 PRK14163 heat shock protein Gr 33.5 6E+02 0.013 26.8 12.6 61 226-286 43-103 (214)
312 KOG0979 Structural maintenance 33.5 1.2E+03 0.025 30.2 23.2 51 340-390 318-373 (1072)
313 PF15070 GOLGA2L5: Putative go 33.4 9.3E+02 0.02 29.0 21.6 26 223-248 36-61 (617)
314 PHA00727 hypothetical protein 33.4 1.8E+02 0.0038 30.8 7.7 64 222-293 4-73 (278)
315 TIGR03794 NHPM_micro_HlyD NHPM 33.2 7E+02 0.015 27.6 18.0 19 226-244 99-117 (421)
316 smart00787 Spc7 Spc7 kinetocho 33.0 7E+02 0.015 27.4 20.0 63 265-331 135-198 (312)
317 KOG1265 Phospholipase C [Lipid 32.9 9E+02 0.02 31.0 14.4 51 320-370 1115-1169(1189)
318 PF02841 GBP_C: Guanylate-bind 32.9 6.3E+02 0.014 26.9 12.2 15 277-291 243-257 (297)
319 PF12999 PRKCSH-like: Glucosid 32.8 1.3E+02 0.0029 30.7 6.7 29 332-360 116-144 (176)
320 PF14992 TMCO5: TMCO5 family 32.6 3E+02 0.0065 30.2 9.6 41 331-384 142-182 (280)
321 KOG0999 Microtubule-associated 32.6 9.9E+02 0.021 29.1 18.2 101 230-341 43-143 (772)
322 PF10146 zf-C4H2: Zinc finger- 32.5 6.3E+02 0.014 26.8 13.3 12 306-317 89-100 (230)
323 PF04977 DivIC: Septum formati 32.4 1.7E+02 0.0037 24.4 6.3 34 223-256 17-50 (80)
324 PF10212 TTKRSYEDQ: Predicted 32.2 4.1E+02 0.0089 31.5 11.2 24 225-248 304-327 (518)
325 PRK10929 putative mechanosensi 32.2 1.2E+03 0.027 30.1 20.8 103 219-321 197-302 (1109)
326 COG2317 Zn-dependent carboxype 32.1 3.9E+02 0.0083 31.5 10.8 109 328-463 64-179 (497)
327 KOG3915 Transcription regulato 31.9 5.4E+02 0.012 30.5 11.8 46 280-332 531-576 (641)
328 PRK08476 F0F1 ATP synthase sub 31.8 4.7E+02 0.01 25.1 16.1 59 226-284 30-88 (141)
329 PF15619 Lebercilin: Ciliary p 31.8 5.8E+02 0.013 26.2 17.4 112 223-355 12-140 (194)
330 cd07625 BAR_Vps17p The Bin/Amp 31.7 6.4E+02 0.014 26.7 15.1 77 225-307 114-191 (230)
331 PRK14148 heat shock protein Gr 31.7 6E+02 0.013 26.3 12.9 68 225-320 42-109 (195)
332 PRK14160 heat shock protein Gr 31.7 6.3E+02 0.014 26.6 13.0 21 299-319 109-129 (211)
333 PF01991 vATP-synt_E: ATP synt 31.7 4.8E+02 0.01 25.2 12.8 13 233-245 4-16 (198)
334 PF10146 zf-C4H2: Zinc finger- 31.7 6.5E+02 0.014 26.7 15.0 9 283-291 41-49 (230)
335 PF11262 Tho2: Transcription f 31.6 1.4E+02 0.0031 32.0 7.1 52 225-276 48-100 (298)
336 TIGR03017 EpsF chain length de 31.5 7.4E+02 0.016 27.3 21.1 31 221-251 169-199 (444)
337 PF14662 CCDC155: Coiled-coil 31.5 6.3E+02 0.014 26.5 19.5 44 364-409 141-184 (193)
338 cd07598 BAR_FAM92 The Bin/Amph 31.4 6.1E+02 0.013 26.3 19.3 58 288-347 115-175 (211)
339 cd07655 F-BAR_PACSIN The F-BAR 31.3 6.4E+02 0.014 26.5 19.1 18 346-363 167-184 (258)
340 KOG0979 Structural maintenance 31.2 1.3E+03 0.027 29.9 20.8 43 223-265 636-678 (1072)
341 COG3074 Uncharacterized protei 31.2 2.7E+02 0.0059 25.2 7.4 63 214-280 9-74 (79)
342 cd07635 BAR_GRAF2 The Bin/Amph 31.2 6.4E+02 0.014 26.5 17.1 108 306-427 34-147 (207)
343 KOG4657 Uncharacterized conser 31.0 7.1E+02 0.015 26.9 14.8 40 271-317 87-126 (246)
344 COG1322 Predicted nuclease of 31.0 9E+02 0.02 28.1 15.1 17 436-452 279-295 (448)
345 PF01865 PhoU_div: Protein of 30.9 5.4E+02 0.012 25.5 15.9 129 231-365 41-177 (214)
346 PF04778 LMP: LMP repeated reg 30.4 4E+02 0.0087 27.1 9.3 72 229-301 71-146 (157)
347 TIGR03007 pepcterm_ChnLen poly 30.3 8.2E+02 0.018 27.5 16.2 162 210-375 191-383 (498)
348 PF15397 DUF4618: Domain of un 30.2 7.4E+02 0.016 26.9 18.7 135 225-361 90-228 (258)
349 PF10191 COG7: Golgi complex c 29.7 1E+03 0.022 29.2 14.3 128 291-444 42-170 (766)
350 TIGR01005 eps_transp_fam exopo 29.7 1E+03 0.022 28.4 21.9 31 221-251 192-222 (754)
351 PRK09173 F0F1 ATP synthase sub 29.6 5.2E+02 0.011 24.9 18.7 72 281-354 37-112 (159)
352 PF06632 XRCC4: DNA double-str 29.4 4.8E+02 0.01 29.1 10.8 47 314-360 160-207 (342)
353 cd08915 V_Alix_like Protein-in 29.3 7.5E+02 0.016 26.7 18.4 33 271-303 248-280 (342)
354 TIGR03321 alt_F1F0_F0_B altern 28.8 6.8E+02 0.015 26.0 15.7 57 295-351 54-112 (246)
355 PF09304 Cortex-I_coil: Cortex 28.7 5.3E+02 0.012 24.8 12.6 21 276-296 15-35 (107)
356 PRK04654 sec-independent trans 28.7 2.7E+02 0.0059 29.5 8.2 15 277-291 41-55 (214)
357 PF15290 Syntaphilin: Golgi-lo 28.6 1.8E+02 0.0039 32.1 7.1 53 345-412 87-139 (305)
358 PLN03188 kinesin-12 family pro 28.6 1.5E+03 0.033 30.0 20.3 31 221-251 1063-1093(1320)
359 KOG2751 Beclin-like protein [S 28.6 1E+03 0.022 27.9 13.3 9 397-405 260-268 (447)
360 KOG2391 Vacuolar sorting prote 28.5 3.9E+02 0.0084 30.3 9.7 81 275-393 207-287 (365)
361 PF13949 ALIX_LYPXL_bnd: ALIX 28.5 6.8E+02 0.015 25.9 19.3 82 268-352 195-278 (296)
362 PF09738 DUF2051: Double stran 28.5 4E+02 0.0086 29.3 9.8 45 364-412 203-248 (302)
363 PF15035 Rootletin: Ciliary ro 28.1 6.6E+02 0.014 25.6 14.1 166 226-406 5-175 (182)
364 CHL00019 atpF ATP synthase CF0 28.1 6E+02 0.013 25.2 17.2 81 291-374 69-153 (184)
365 PRK14144 heat shock protein Gr 28.0 4.4E+02 0.0095 27.5 9.5 22 298-319 92-113 (199)
366 KOG1656 Protein involved in gl 27.7 7.7E+02 0.017 26.3 14.7 72 247-319 31-115 (221)
367 cd07673 F-BAR_FCHO2 The F-BAR 27.7 7.7E+02 0.017 26.2 21.3 38 325-362 133-172 (269)
368 PF10147 CR6_interact: Growth 27.5 6.4E+02 0.014 26.7 10.7 74 246-326 119-192 (217)
369 PF09036 Bcr-Abl_Oligo: Bcr-Ab 27.4 1.8E+02 0.0039 26.4 5.8 42 225-266 28-69 (79)
370 PRK14147 heat shock protein Gr 27.3 5.5E+02 0.012 25.9 9.9 19 454-472 144-163 (172)
371 KOG4571 Activating transcripti 27.3 2.5E+02 0.0054 31.0 7.9 38 321-358 243-280 (294)
372 KOG0245 Kinesin-like protein [ 27.2 4.1E+02 0.009 34.1 10.5 78 245-327 623-700 (1221)
373 KOG0982 Centrosomal protein Nu 27.0 1.1E+03 0.024 27.8 19.2 43 203-245 221-265 (502)
374 cd07653 F-BAR_CIP4-like The F- 26.9 6.9E+02 0.015 25.5 17.5 84 274-367 62-146 (251)
375 KOG1899 LAR transmembrane tyro 26.9 1.3E+03 0.028 28.6 18.6 33 286-318 162-194 (861)
376 cd07602 BAR_RhoGAP_OPHN1-like 26.8 7.6E+02 0.016 25.9 18.1 96 305-413 33-134 (207)
377 PF08598 Sds3: Sds3-like; Int 26.4 89 0.0019 30.9 4.2 95 293-388 23-122 (205)
378 PF15290 Syntaphilin: Golgi-lo 26.4 8.4E+02 0.018 27.2 11.6 48 225-279 70-117 (305)
379 PF05557 MAD: Mitotic checkpoi 26.1 22 0.00048 42.0 0.0 20 361-380 271-290 (722)
380 cd07631 BAR_APPL1 The Bin/Amph 26.1 8.1E+02 0.018 26.0 15.3 104 298-414 24-133 (215)
381 KOG4348 Adaptor protein CMS/SE 26.1 1E+02 0.0022 35.8 5.0 43 342-392 578-624 (627)
382 PF09738 DUF2051: Double stran 25.6 7E+02 0.015 27.5 11.0 64 300-363 79-156 (302)
383 PF05852 DUF848: Gammaherpesvi 25.6 3.2E+02 0.007 27.3 7.8 69 202-289 40-108 (146)
384 PF00769 ERM: Ezrin/radixin/mo 25.5 8.1E+02 0.018 25.8 13.2 33 373-405 179-216 (246)
385 PF05622 HOOK: HOOK protein; 25.5 23 0.0005 41.9 0.0 11 278-288 292-302 (713)
386 PRK14141 heat shock protein Gr 25.5 8E+02 0.017 25.7 12.2 59 228-286 36-94 (209)
387 PF13870 DUF4201: Domain of un 25.4 6.5E+02 0.014 24.7 13.5 75 268-342 61-135 (177)
388 TIGR03321 alt_F1F0_F0_B altern 25.4 7.8E+02 0.017 25.6 16.6 13 398-410 191-203 (246)
389 COG4372 Uncharacterized protei 25.3 1.1E+03 0.025 27.4 25.9 182 225-412 83-284 (499)
390 PTZ00121 MAEBL; Provisional 25.2 1.9E+03 0.041 30.0 22.0 20 326-345 1216-1235(2084)
391 PF10454 DUF2458: Protein of u 25.2 6.8E+02 0.015 24.8 11.1 16 196-211 2-17 (150)
392 KOG0241 Kinesin-like protein [ 25.2 1.6E+02 0.0035 37.3 6.6 25 334-358 358-382 (1714)
393 KOG4673 Transcription factor T 25.0 1.4E+03 0.031 28.5 20.1 160 228-408 344-506 (961)
394 KOG4787 Uncharacterized conser 25.0 9.7E+02 0.021 29.3 12.5 37 319-355 522-559 (852)
395 KOG2129 Uncharacterized conser 25.0 1.2E+03 0.026 27.5 16.6 22 342-363 255-276 (552)
396 TIGR01541 tape_meas_lam_C phag 24.9 9.8E+02 0.021 26.6 17.0 12 392-403 135-146 (332)
397 KOG3595 Dyneins, heavy chain [ 24.9 1.6E+03 0.034 29.7 15.5 34 270-303 693-726 (1395)
398 PF11172 DUF2959: Protein of u 24.8 1.5E+02 0.0033 31.0 5.6 45 216-260 156-200 (201)
399 TIGR03545 conserved hypothetic 24.4 1.1E+03 0.024 27.9 13.1 13 652-664 510-522 (555)
400 PRK10132 hypothetical protein; 24.4 6E+02 0.013 24.0 8.9 27 237-263 12-38 (108)
401 KOG2185 Predicted RNA-processi 24.3 1.7E+02 0.0038 33.7 6.3 61 343-408 416-476 (486)
402 cd00089 HR1 Protein kinase C-r 24.2 2.6E+02 0.0056 23.8 6.1 33 292-325 7-39 (72)
403 PRK15422 septal ring assembly 24.1 5.6E+02 0.012 23.5 8.5 56 220-279 15-73 (79)
404 TIGR01554 major_cap_HK97 phage 24.0 3.6E+02 0.0077 29.4 8.6 19 240-258 2-20 (378)
405 COG5185 HEC1 Protein involved 24.0 1.3E+03 0.028 27.6 14.2 75 247-321 308-398 (622)
406 KOG1103 Predicted coiled-coil 23.9 1.2E+03 0.025 27.0 20.2 64 253-316 116-185 (561)
407 PF14643 DUF4455: Domain of un 23.7 1.1E+03 0.025 26.9 21.7 115 222-352 10-131 (473)
408 cd07672 F-BAR_PSTPIP2 The F-BA 23.7 8.7E+02 0.019 25.5 16.3 38 292-329 101-138 (240)
409 PF13870 DUF4201: Domain of un 23.6 7.1E+02 0.015 24.4 21.3 58 305-362 63-120 (177)
410 cd07624 BAR_SNX7_30 The Bin/Am 23.5 7.8E+02 0.017 24.9 19.2 132 224-361 22-155 (200)
411 PF02183 HALZ: Homeobox associ 23.4 1.6E+02 0.0035 23.8 4.4 34 331-364 3-36 (45)
412 PF10498 IFT57: Intra-flagella 23.3 1.1E+03 0.024 26.5 14.7 28 384-411 288-315 (359)
413 COG3879 Uncharacterized protei 23.3 1.1E+02 0.0025 32.7 4.5 81 382-462 52-150 (247)
414 KOG4593 Mitotic checkpoint pro 23.2 1.5E+03 0.032 28.1 25.3 31 283-313 150-180 (716)
415 cd07652 F-BAR_Rgd1 The F-BAR ( 23.1 8.6E+02 0.019 25.3 16.7 83 272-364 60-142 (234)
416 PRK13455 F0F1 ATP synthase sub 22.9 7.5E+02 0.016 24.5 18.5 71 285-355 66-138 (184)
417 cd07676 F-BAR_FBP17 The F-BAR 22.8 9.3E+02 0.02 25.5 17.0 15 249-263 38-52 (253)
418 COG0497 RecN ATPase involved i 22.7 1.4E+03 0.03 27.5 21.1 79 284-366 208-295 (557)
419 TIGR01834 PHA_synth_III_E poly 22.7 93 0.002 34.4 3.8 31 229-259 288-318 (320)
420 PF04012 PspA_IM30: PspA/IM30 22.7 7.9E+02 0.017 24.7 19.0 137 251-408 4-144 (221)
421 PRK14157 heat shock protein Gr 22.7 4.9E+02 0.011 27.8 8.9 64 227-318 81-144 (227)
422 PRK01919 tatB sec-independent 22.5 3.9E+02 0.0083 27.5 7.8 17 274-290 38-54 (169)
423 TIGR02977 phageshock_pspA phag 22.2 8.6E+02 0.019 24.9 21.8 104 224-355 32-135 (219)
424 PF07200 Mod_r: Modifier of ru 22.2 6.8E+02 0.015 23.7 11.7 36 364-399 80-115 (150)
425 PF13801 Metal_resist: Heavy-m 22.2 2.1E+02 0.0044 24.8 5.2 40 224-263 60-99 (125)
426 PRK13428 F0F1 ATP synthase sub 22.1 1.2E+03 0.026 26.6 17.7 34 369-402 206-240 (445)
427 KOG2656 DNA methyltransferase 21.8 1.5E+02 0.0033 34.0 5.2 60 295-354 176-236 (445)
428 PRK14161 heat shock protein Gr 21.8 8.6E+02 0.019 24.8 12.3 23 298-320 66-88 (178)
429 TIGR01005 eps_transp_fam exopo 21.8 1.4E+03 0.031 27.3 15.5 14 344-357 373-386 (754)
430 PF05791 Bacillus_HBL: Bacillu 21.6 8.3E+02 0.018 24.5 11.1 78 324-412 101-178 (184)
431 PF12252 SidE: Dot/Icm substra 21.3 2E+03 0.043 28.8 16.9 134 247-393 1011-1160(1439)
432 PF06156 DUF972: Protein of un 21.1 2.4E+02 0.0052 26.5 5.7 41 225-265 17-57 (107)
433 KOG2412 Nuclear-export-signal 20.8 1.5E+03 0.033 27.3 16.2 35 469-503 396-435 (591)
434 PRK11281 hypothetical protein; 20.8 1.9E+03 0.042 28.5 17.8 26 225-250 194-219 (1113)
435 TIGR02231 conserved hypothetic 20.7 9.4E+02 0.02 27.6 11.3 29 228-256 69-97 (525)
436 PF15456 Uds1: Up-regulated Du 20.6 4E+02 0.0088 25.7 7.2 81 270-354 29-109 (124)
437 PF15005 IZUMO: Izumo sperm-eg 20.5 4.4E+02 0.0095 26.6 7.7 62 253-324 55-116 (160)
438 TIGR02209 ftsL_broad cell divi 20.5 3.3E+02 0.0072 23.3 6.1 34 225-258 26-59 (85)
439 COG5245 DYN1 Dynein, heavy cha 20.5 3.5E+02 0.0076 36.7 8.3 117 295-413 2163-2344(3164)
440 TIGR00998 8a0101 efflux pump m 20.4 1E+03 0.022 25.0 17.1 86 225-326 82-167 (334)
441 PF06657 Cep57_MT_bd: Centroso 20.3 3E+02 0.0065 24.5 5.9 21 223-243 17-37 (79)
442 PRK10361 DNA recombination pro 20.3 1.4E+03 0.031 26.8 18.7 8 282-289 86-93 (475)
443 COG3851 UhpB Signal transducti 20.3 2.4E+02 0.0053 32.5 6.4 52 296-356 274-325 (497)
444 PF09730 BicD: Microtubule-ass 20.2 1.7E+03 0.037 27.6 19.8 35 325-359 351-385 (717)
445 PF12126 DUF3583: Protein of u 20.1 1.3E+03 0.027 26.0 12.7 16 592-608 230-245 (324)
No 1
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.71 E-value=0.12 Score=59.33 Aligned_cols=132 Identities=21% Similarity=0.266 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhc----cHHHHHHHHHhhHHHHhhh-hhhHHH
Q 005373 296 IEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIE-EVCDELAKEIGE----DKAEVEALKRESMKLREEV-DDERKM 369 (699)
Q Consensus 296 ~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE-~vCdELAkeI~e----dkaEVe~LKres~k~reE~-EeER~M 369 (699)
++.-.-.|++||+++.+.=.+.+.||-.-|-.-.=|. .+|| .+-.+++ ..+|...|.+.....++++ +-.+++
T Consensus 302 Sqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad-~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el 380 (546)
T PF07888_consen 302 SQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLAD-ASLELKEGRSQWAQEKQALQHSAEADKDEIEKLSREL 380 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4455567888888888777778888776664322222 2232 2223333 3334444444444444555 345566
Q ss_pred HHHHHHhHHHhhh----------------hhhhhhhhhhHHHhHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHh
Q 005373 370 LQMAEVWREERVQ----------------MKLVDAKVAVEQKYSQMNKLVAELEAFLSSRSINPDIQEMKEAEMLRQAAA 433 (699)
Q Consensus 370 LqmAEvWREERVQ----------------MKL~dAk~~leeK~s~ldkL~~eLE~FL~sk~~~~d~~~~r~ae~~rqs~e 433 (699)
.++++...|||.+ +.|+|++-.|.|+.+.+..++-|=|-+...+. ..+++.+.|++-+.
T Consensus 381 ~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQ-----eL~~yi~~Le~r~~ 455 (546)
T PF07888_consen 381 QMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQ-----ELLEYIERLEQRLD 455 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 6667766677664 55666666666666666666666666666553 23455555555444
No 2
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.62 E-value=0.014 Score=68.42 Aligned_cols=164 Identities=24% Similarity=0.355 Sum_probs=105.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 005373 223 SMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSK 302 (699)
Q Consensus 223 Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~K 302 (699)
+-|..|+.|-++.+.++.+|.+.++..+..|..|=|+|++|+.++-. +-.+|..|||.|+..|.-
T Consensus 460 ~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~------------lEkQL~eErk~r~~ee~~--- 524 (697)
T PF09726_consen 460 SELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRAS------------LEKQLQEERKARKEEEEK--- 524 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHhHHHHh---
Confidence 55788999999999999999999999999999999999999875533 455799999999997753
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHH---hhhhhhHHHHHHHHHhHHH
Q 005373 303 LVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLR---EEVDDERKMLQMAEVWREE 379 (699)
Q Consensus 303 L~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~r---eE~EeER~MLqmAEvWREE 379 (699)
-++.++.+.+.-. .--|.=|..+.=||.-|+.|-+++..-+..+..|..+...+| .|-+.|-+||..|=.=.-
T Consensus 525 aar~~~~~~~~r~---e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amq- 600 (697)
T PF09726_consen 525 AARALAQAQATRQ---ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQ- 600 (697)
T ss_pred hhhccccchhccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-
Confidence 3332221111111 111122444455666667777777666666666666554333 233456666655532111
Q ss_pred hhhhhhhhhhhhhHHHhHHHHHHHHHHHHHHhh
Q 005373 380 RVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSS 412 (699)
Q Consensus 380 RVQMKL~dAk~~leeK~s~ldkL~~eLE~FL~s 412 (699)
|--..||...++=.++.-||=.-|..
T Consensus 601 -------dk~~~LE~sLsaEtriKldLfsaLg~ 626 (697)
T PF09726_consen 601 -------DKNQHLENSLSAETRIKLDLFSALGD 626 (697)
T ss_pred -------HHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 12224666666667788888777776
No 3
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.98 E-value=0.15 Score=58.55 Aligned_cols=236 Identities=24% Similarity=0.326 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhH----------------HHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVS----------------EEKAAWRSREHEKIRAFIDDLKAEISR 288 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~Kqla----------------EEK~awKskE~eki~a~i~slk~ELe~ 288 (699)
|..|+.|++.++.+..+.+++....+.+++..+..++ ||....=.+|..+|...|..++.+|++
T Consensus 115 i~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~ 194 (546)
T KOG0977|consen 115 ITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDD 194 (546)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4566666666666666666666555555554333222 333334456888999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhh
Q 005373 289 ERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKER----ELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVD 364 (699)
Q Consensus 289 ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaR----ellE~vCdELAkeI~edkaEVe~LKres~k~reE~E 364 (699)
|.-+|..++.-..=|-.||.=++...+..+.|+-.- .+| +.=+..-+||+.-|.|.+|+-+..-+...+.++.+
T Consensus 195 Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~-~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~- 272 (546)
T KOG0977|consen 195 ETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRK-ARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESW- 272 (546)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH-HhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-
Confidence 999999999999999999988887777766654332 222 23466778999999999998888766555443322
Q ss_pred hhHHHHH----------HHHHhHHHhhhhhhh----hhhh-hhHHHhHHHHHHHHHHHHHHhhc----CCCCChhhHHHH
Q 005373 365 DERKMLQ----------MAEVWREERVQMKLV----DAKV-AVEQKYSQMNKLVAELEAFLSSR----SINPDIQEMKEA 425 (699)
Q Consensus 365 eER~MLq----------mAEvWREERVQMKL~----dAk~-~leeK~s~ldkL~~eLE~FL~sk----~~~~d~~~~r~a 425 (699)
-.+++=. ...--|||.+.|+-. -||+ .||..|+.+++...+|+--|..- ...++.+....+
T Consensus 273 Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~ 352 (546)
T KOG0977|consen 273 YKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIA 352 (546)
T ss_pred HHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHH
Confidence 1122211 123457777666532 2333 67888888888888888777762 234555554444
Q ss_pred HHHHHHHh-hcccccccccccCCC-CCCCcchhhhhccCCCCC
Q 005373 426 EMLRQAAA-SVNIQEIKEFTYEPP-NPDDIFSVFEDVNFGESN 466 (699)
Q Consensus 426 e~~rqs~e-Sv~~~~ike~ty~p~-~~dDi~si~eel~~~e~~ 466 (699)
++.-+.-. +|.++++ .++. .-|==-++|-.|=+++.+
T Consensus 353 ~mReec~~l~~Elq~L----lD~ki~Ld~EI~~YRkLLegee~ 391 (546)
T KOG0977|consen 353 KMREECQQLSVELQKL----LDTKISLDAEIAAYRKLLEGEEE 391 (546)
T ss_pred HHHHHHHHHHHHHHHh----hchHhHHHhHHHHHHHHhccccC
Confidence 43333222 2233332 1111 123335667777777554
No 4
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.96 E-value=0.18 Score=60.50 Aligned_cols=142 Identities=19% Similarity=0.335 Sum_probs=113.0
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH---------HHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 005373 218 QVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEH---------FLRKVSEEKAAWRSREHEKIRAFIDDLKAEISR 288 (699)
Q Consensus 218 ~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~---------l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ 288 (699)
.+--|.-+.-|+.||.+||...++++.-+..++.++++ |=|.+||||+--=--|-+-.+.-|++|-.+||-
T Consensus 271 kSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEI 350 (1243)
T KOG0971|consen 271 KSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEI 350 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456777889999999999999999888888877765 458899999987777888888888887777664
Q ss_pred HHH---------------hhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccH
Q 005373 289 ERK---------------NRQRIEIVNSKLVNELA-------DAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDK 346 (699)
Q Consensus 289 ERk---------------~Rkr~E~ln~KL~~ELa-------e~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edk 346 (699)
=|- --+++|.-|.||..-|- ..|.-..++.|++|+-+-.-.-|+.+-.-|-++|...+
T Consensus 351 LKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aE 430 (1243)
T KOG0971|consen 351 LKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAE 430 (1243)
T ss_pred HHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 332 24789999999987764 45566678888998888888888888899999999888
Q ss_pred HHHHHHHHhhHHH
Q 005373 347 AEVEALKRESMKL 359 (699)
Q Consensus 347 aEVe~LKres~k~ 359 (699)
+.|-.||..-+.+
T Consensus 431 s~iadlkEQVDAA 443 (1243)
T KOG0971|consen 431 STIADLKEQVDAA 443 (1243)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888776554
No 5
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.74 E-value=0.48 Score=58.99 Aligned_cols=125 Identities=17% Similarity=0.182 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhH
Q 005373 281 DLKAEISRERKNRQRIEIVNSKL---VNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESM 357 (699)
Q Consensus 281 slk~ELe~ERk~Rkr~E~ln~KL---~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~ 357 (699)
.+..+++.-.....+.+.--..| -.+|.+.+..+...++....=...-+-+...+.++...|.+.+.+++.|..+..
T Consensus 840 ~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~ 919 (1311)
T TIGR00606 840 TVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLE 919 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 33333333344444444444444 456677777777766655555555555666667777777777777777777766
Q ss_pred HHHhhhhhhHHHHHHHHHhHHHhhhhhhhhhhhhhHHHhHHHHHHHHHHHHHHhhc
Q 005373 358 KLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSSR 413 (699)
Q Consensus 358 k~reE~EeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~eLE~FL~sk 413 (699)
++..+.+.-+.-.+.. ++..|+++. .|......+..|..+|+.|+...
T Consensus 920 ~~~~~~~~~~~~~~~~----~~~~~~~~~----~~~~~~~~~~~~~~~i~~y~~~~ 967 (1311)
T TIGR00606 920 KDQQEKEELISSKETS----NKKAQDKVN----DIKEKVKNIHGYMKDIENKIQDG 967 (1311)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcC
Confidence 6655554433333322 345555553 45666778888889999998875
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.69 E-value=0.88 Score=54.23 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=9.9
Q ss_pred hhhhhhhhhHHHhHHHHHHHHHHHH
Q 005373 384 KLVDAKVAVEQKYSQMNKLVAELEA 408 (699)
Q Consensus 384 KL~dAk~~leeK~s~ldkL~~eLE~ 408 (699)
++.+.+..+.+....++.+..+++.
T Consensus 435 ~~~~l~~~~~~~~~~l~~l~~~~~~ 459 (1164)
T TIGR02169 435 KINELEEEKEDKALEIKKQEWKLEQ 459 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444443
No 7
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.67 E-value=0.28 Score=63.13 Aligned_cols=90 Identities=27% Similarity=0.430 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhH--HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVS--EEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSK 302 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~Kqla--EEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~K 302 (699)
|+.|+.|+..-+.+|..|.+|++.....+.+|.-.+. +||+.--+|...|+...|+++...|+.|++.|..+|...+|
T Consensus 966 ~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rk 1045 (1930)
T KOG0161|consen 966 LKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRK 1045 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555555555555443 56666777888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 005373 303 LVNELADAKVSA 314 (699)
Q Consensus 303 L~~ELae~Kss~ 314 (699)
|.-||...+.+.
T Consensus 1046 le~el~~~~e~~ 1057 (1930)
T KOG0161|consen 1046 LEGELKDLQESI 1057 (1930)
T ss_pred HHHHHHHhhhHH
Confidence 988885554443
No 8
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.63 E-value=0.39 Score=56.68 Aligned_cols=160 Identities=23% Similarity=0.320 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 005373 224 MVAALEAEVEQARTRIQELETE--------------RRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRE 289 (699)
Q Consensus 224 lv~aLk~EL~~Ar~rI~eL~~E--------------~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~E 289 (699)
-|+.|++||.++|..=+||... -+..+++.|.|..++.+=.. .+++=+..++.|-..|.+|
T Consensus 426 dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~-----aRq~DKq~l~~LEkrL~eE 500 (697)
T PF09726_consen 426 DVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQ-----ARQQDKQSLQQLEKRLAEE 500 (697)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 3788888888887766665554 22233444444444433222 2233345667777777777
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhh
Q 005373 290 RKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERE------LIEEVCDELAKEIGEDKAEVEALKRESMKLREEV 363 (699)
Q Consensus 290 Rk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRe------llE~vCdELAkeI~edkaEVe~LKres~k~reE~ 363 (699)
|+.|..+|. +|.+-+.+-++ |.|+-+|- ...+.|+-+-..+.+.+.|+..|++|....
T Consensus 501 ~~~R~~lEk-------QL~eErk~r~~-----ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~k---- 564 (697)
T PF09726_consen 501 RRQRASLEK-------QLQEERKARKE-----EEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQK---- 564 (697)
T ss_pred HHHHHHHHH-------HHHHHHHHHhH-----HHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 777776663 22222211111 11222221 111333335557788888888888775532
Q ss_pred hhhHHHHHHHHHh------HH-HhhhhhhhhhhhhhHHHhHHHHH-HHHH
Q 005373 364 DDERKMLQMAEVW------RE-ERVQMKLVDAKVAVEQKYSQMNK-LVAE 405 (699)
Q Consensus 364 EeER~MLqmAEvW------RE-ERVQMKL~dAk~~leeK~s~ldk-L~~e 405 (699)
||+.+.--.|++ +| +.=..-|.-|=.++.||+..|+. |.+|
T Consensus 565 -ee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaE 613 (697)
T PF09726_consen 565 -EEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAE 613 (697)
T ss_pred -HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 333333333332 33 22234456666677888877765 5544
No 9
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.61 E-value=0.97 Score=53.88 Aligned_cols=26 Identities=15% Similarity=0.340 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHH
Q 005373 228 LEAEVEQARTRIQELETERRSSKKKL 253 (699)
Q Consensus 228 Lk~EL~~Ar~rI~eL~~E~~s~k~ei 253 (699)
|+.++...+.++..+..+....+.++
T Consensus 292 l~~~~~~~~~~~~~~~~~~~~~~~~l 317 (1164)
T TIGR02169 292 VKEKIGELEAEIASLERSIAEKEREL 317 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443333333
No 10
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.57 E-value=0.51 Score=58.10 Aligned_cols=179 Identities=22% Similarity=0.282 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhHHHHH--HhhhhH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 005373 235 ARTRIQELETERRSSKKKLEHFLRKVSEEKA--AWRSRE-HEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAK 311 (699)
Q Consensus 235 Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~--awKskE-~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~K 311 (699)
.+++|-+...+....+..+...-.++.-++- +-|... +..++.....++...+..++-++.+|.-+.|+-..|.-+.
T Consensus 332 ~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~ 411 (1293)
T KOG0996|consen 332 SRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLT 411 (1293)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666555552222 222222 3347777888888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHH-HHHHhHHH--hhhhhhhhh
Q 005373 312 VSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQ-MAEVWREE--RVQMKLVDA 388 (699)
Q Consensus 312 ss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~reE~EeER~MLq-mAEvWREE--RVQMKL~dA 388 (699)
+-++++.+++|+.++.+.-+|..-...-..|.+...|++.|.....+.+.++++.+.-|. =++..++| +.|-.|+..
T Consensus 412 ~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~ 491 (1293)
T KOG0996|consen 412 SKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPL 491 (1293)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988888888777777777766665553 35555554 356667777
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHhhc
Q 005373 389 KVAVEQKYSQMNKLVAELEAFLSSR 413 (699)
Q Consensus 389 k~~leeK~s~ldkL~~eLE~FL~sk 413 (699)
...+-+.-+.++-.+.||+-.+...
T Consensus 492 ~~~~n~~~~e~~vaesel~~L~~~~ 516 (1293)
T KOG0996|consen 492 LKQVNEARSELDVAESELDILLSRH 516 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777666653
No 11
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.46 E-value=0.32 Score=50.49 Aligned_cols=95 Identities=21% Similarity=0.322 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-------HHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 005373 224 MVAALEAEVEQARTRIQELETERRSSKKKL-------EHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRI 296 (699)
Q Consensus 224 lv~aLk~EL~~Ar~rI~eL~~E~~s~k~ei-------e~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~ 296 (699)
+-..+..||..+|..|..+..|+....-++ +.|-.++.++ .+.+..+..-|..++.+|+.+-..|-.+
T Consensus 48 ~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e-----~~~~~~le~el~~lrk~ld~~~~~r~~l 122 (312)
T PF00038_consen 48 IKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEE-----LAERKDLEEELESLRKDLDEETLARVDL 122 (312)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhhhhhhhhhhhhHhHH
Confidence 445566777777777776666655444444 4444444444 3355667777888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 297 EIVNSKLVNELADAKVSAKRYMQDYEK 323 (699)
Q Consensus 297 E~ln~KL~~ELae~Kss~~~a~kelE~ 323 (699)
|.--.-|-.||.-.+....+-+.+|..
T Consensus 123 e~~i~~L~eEl~fl~~~heeEi~~L~~ 149 (312)
T PF00038_consen 123 ENQIQSLKEELEFLKQNHEEEIEELRE 149 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 888888888887766666655555544
No 12
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.32 E-value=1.5 Score=45.69 Aligned_cols=77 Identities=25% Similarity=0.365 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHH
Q 005373 222 VSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQR-IEIVN 300 (699)
Q Consensus 222 ~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr-~E~ln 300 (699)
..-+..|+.|++..+.+..+..+.+.....++..|-+.+.++-++. ..+...|+.+++||+.-++.-.. ++.|-
T Consensus 74 ~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r-----~~le~~i~~L~eEl~fl~~~heeEi~~L~ 148 (312)
T PF00038_consen 74 ELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLAR-----VDLENQIQSLKEELEFLKQNHEEEIEELR 148 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhH-----hHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 3457788888888999999999999999999999999999887754 55677789999999887765443 44444
Q ss_pred HHH
Q 005373 301 SKL 303 (699)
Q Consensus 301 ~KL 303 (699)
.++
T Consensus 149 ~~~ 151 (312)
T PF00038_consen 149 EQI 151 (312)
T ss_dssp TT-
T ss_pred hcc
Confidence 444
No 13
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.29 E-value=1.6 Score=53.97 Aligned_cols=100 Identities=25% Similarity=0.304 Sum_probs=67.3
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005373 264 KAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIG 343 (699)
Q Consensus 264 K~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~ 343 (699)
.+.+-..+...+.+-+..++.++++-...+.++..-...|..++.++...+...-.+++.-+..-.-+++.+.++...+.
T Consensus 384 ~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 463 (1163)
T COG1196 384 ELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLK 463 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666777777777777777777777777777777777777777766655666666666666677777777666
Q ss_pred ccHHHHHHHHHhhHHHHhhh
Q 005373 344 EDKAEVEALKRESMKLREEV 363 (699)
Q Consensus 344 edkaEVe~LKres~k~reE~ 363 (699)
+.+.++..++.+-.++..++
T Consensus 464 ~~~~~~~~~~~~~~~~~~~l 483 (1163)
T COG1196 464 ELERELAELQEELQRLEKEL 483 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666555555544
No 14
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.27 E-value=1.8 Score=51.40 Aligned_cols=6 Identities=33% Similarity=0.534 Sum_probs=2.6
Q ss_pred hhHHHH
Q 005373 586 SSIARL 591 (699)
Q Consensus 586 ssiskL 591 (699)
-+|+++
T Consensus 1098 ~~l~~~ 1103 (1179)
T TIGR02168 1098 TALALL 1103 (1179)
T ss_pred HHHHHH
Confidence 334444
No 15
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.24 E-value=2.5 Score=52.29 Aligned_cols=43 Identities=40% Similarity=0.438 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHH
Q 005373 318 MQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLR 360 (699)
Q Consensus 318 ~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~r 360 (699)
-++++.=.....-++..|++|...|.+.+.+++.++.+....+
T Consensus 827 ~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 869 (1163)
T COG1196 827 EQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELE 869 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3555554555556777778777777777777777766655444
No 16
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.16 E-value=3.2 Score=48.13 Aligned_cols=33 Identities=33% Similarity=0.533 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 005373 226 AALEAEVEQARTRIQELETERRSSKKKLEHFLR 258 (699)
Q Consensus 226 ~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~K 258 (699)
..|+.|+..-+.+|.+|.++-...+++++.|..
T Consensus 160 ~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~ 192 (546)
T PF07888_consen 160 EQLEEEVEQLREEVERLEAELEQEEEEMEQLKQ 192 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444433
No 17
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.08 E-value=1.4 Score=53.87 Aligned_cols=162 Identities=20% Similarity=0.288 Sum_probs=92.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 005373 222 VSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNS 301 (699)
Q Consensus 222 ~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~ 301 (699)
+.-+..|..++..++.+|++...-.+....+|.-|=+.+.+-+..+.++-.| ...-|+-.+..++..++.=++.|..-.
T Consensus 740 ~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkd-l~keik~~k~~~e~~~~~~ek~~~e~e 818 (1174)
T KOG0933|consen 740 LDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKD-LEKEIKTAKQRAEESSKELEKRENEYE 818 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666655555555555555555555544433332 334455566666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHHhHHHhh
Q 005373 302 KLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERV 381 (699)
Q Consensus 302 KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERV 381 (699)
+|.-|..+++.++..+-+.|+ -++.-|+.|..+|++.++.|.....+..++..|+.++..+
T Consensus 819 ~l~lE~e~l~~e~~~~k~~l~-------~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k------------ 879 (1174)
T KOG0933|consen 819 RLQLEHEELEKEISSLKQQLE-------QLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAK------------ 879 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH------------
Confidence 666666665555544433332 3455566666666666666666666555555555444333
Q ss_pred hhhhhhhhhhhHHHhHHHHHHHHHHHHHHhhc
Q 005373 382 QMKLVDAKVAVEQKYSQMNKLVAELEAFLSSR 413 (699)
Q Consensus 382 QMKL~dAk~~leeK~s~ldkL~~eLE~FL~sk 413 (699)
+-+=..+++.+..+.|.|+..+
T Consensus 880 ----------~~~~dt~i~~~~~~~e~~~~e~ 901 (1174)
T KOG0933|consen 880 ----------QRDIDTEISGLLTSQEKCLSEK 901 (1174)
T ss_pred ----------HHhhhHHHhhhhhHHHHHHHHh
Confidence 2333445666666667777665
No 18
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.01 E-value=2.3 Score=52.78 Aligned_cols=161 Identities=17% Similarity=0.170 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHHhHHHhh
Q 005373 302 KLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERV 381 (699)
Q Consensus 302 KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERV 381 (699)
-.--||...+.....+++.+|.=+.+=..+..--+|..-+|.+.+.++..+|.|...+..+++.=+.=.+---.-.-...
T Consensus 504 vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~r 583 (1293)
T KOG0996|consen 504 VAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLR 583 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777788888887777777777788888888999999999888877776666332222221111111122
Q ss_pred hhhhhhhhhhhHH---HhHHHHHHH-----HHHHHHHhhcC--CCCCh------------------hhHHHHHHHHHHHh
Q 005373 382 QMKLVDAKVAVEQ---KYSQMNKLV-----AELEAFLSSRS--INPDI------------------QEMKEAEMLRQAAA 433 (699)
Q Consensus 382 QMKL~dAk~~lee---K~s~ldkL~-----~eLE~FL~sk~--~~~d~------------------~~~r~ae~~rqs~e 433 (699)
| ++.+|+..+.. ++.+|+.|. +-|..|...-| +..|. .....|+.|...+.
T Consensus 584 q-rveE~ks~~~~~~s~~kVl~al~r~kesG~i~Gf~GRLGDLg~Id~kYDvAIsTac~~LdyiVVdt~e~aq~cI~fl~ 662 (1293)
T KOG0996|consen 584 Q-RVEEAKSSLSSSRSRNKVLDALMRLKESGRIPGFYGRLGDLGAIDEKYDVAISTACARLDYIVVDTIETAQECINFLK 662 (1293)
T ss_pred H-HHHHHHHHHHhhhhhhHHHHHHHHHHHcCCCCccccccccccccchHHHHHHHHhccccceEEeccHHHHHHHHHHHH
Confidence 2 45555554433 344555555 33444543322 12222 23567888888888
Q ss_pred hccccc--------cc--ccccCCC-CCCCcchhhhhccCC
Q 005373 434 SVNIQE--------IK--EFTYEPP-NPDDIFSVFEDVNFG 463 (699)
Q Consensus 434 Sv~~~~--------ik--e~ty~p~-~~dDi~si~eel~~~ 463 (699)
.-+|-- |+ .+.-.|+ .++++--+|.=++|.
T Consensus 663 ~~nLgraTFi~LDki~~~~~~l~~i~tpenvPRLfDLv~~~ 703 (1293)
T KOG0996|consen 663 KNNLGRATFIILDKIKDHQKKLAPITTPENVPRLFDLVKCK 703 (1293)
T ss_pred HcCCCceeEEehHhhhhhhhccCCCCCCCCcchHhhhhccC
Confidence 766533 11 1223444 445555555555554
No 19
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.76 E-value=3.1 Score=54.28 Aligned_cols=120 Identities=23% Similarity=0.385 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 005373 236 RTRIQELETERRSSKKKLEHFLRKVSEEKAA--WRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVS 313 (699)
Q Consensus 236 r~rI~eL~~E~~s~k~eie~l~KqlaEEK~a--wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss 313 (699)
...+.+|..+.....-++-.+.-++.++.+. -..|....+.+-|..+.++|+.||..|.++|...+.|..||.+.+--
T Consensus 1061 ~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~ 1140 (1930)
T KOG0161|consen 1061 KKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEE 1140 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555666666677666543 33455566778899999999999999999999999999999887654
Q ss_pred HHHH---------------------HHHHHHHHHH-HHHHHHHHHHHHHhhhccHHHHHHHHHh
Q 005373 314 AKRY---------------------MQDYEKERKE-RELIEEVCDELAKEIGEDKAEVEALKRE 355 (699)
Q Consensus 314 ~~~a---------------------~kelE~ERKa-RellE~vCdELAkeI~edkaEVe~LKre 355 (699)
+... -++||.+... ...++.++-..+..+.+....++.+++.
T Consensus 1141 Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~ 1204 (1930)
T KOG0161|consen 1141 LEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKD 1204 (1930)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333 1222222221 1234555555555565555555555543
No 20
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.75 E-value=2.2 Score=53.13 Aligned_cols=111 Identities=16% Similarity=0.240 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 005373 228 LEAEVEQARTRIQELETERRS-----SKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSK 302 (699)
Q Consensus 228 Lk~EL~~Ar~rI~eL~~E~~s-----~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~K 302 (699)
+-.||+.+..+++-.+.|.+. .++++.-. +||++-...+..++.+-|+.+++||++..+-..++-.-+.|
T Consensus 466 ~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~-----~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~k 540 (1317)
T KOG0612|consen 466 MDKELEETIEKLKSEESELQREQKALLQHEQKEV-----EEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEK 540 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334666666555544444443 22333333 34444445567788999999999999998888888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005373 303 LVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIG 343 (699)
Q Consensus 303 L~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~ 343 (699)
+..+..++..+..-+.-+.+.++|-|...++.|..+-.+..
T Consensus 541 v~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e 581 (1317)
T KOG0612|consen 541 VNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELE 581 (1317)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhh
Confidence 98888888888888888899999999999999988766554
No 21
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=95.52 E-value=4.1 Score=46.51 Aligned_cols=131 Identities=27% Similarity=0.360 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 005373 271 EHEKIRAFIDDLKAEISRERKNRQRIEIV-------NSKLVNELADAKVSAKRYMQDYEKERKERELIEEV---CDELAK 340 (699)
Q Consensus 271 E~eki~a~i~slk~ELe~ERk~Rkr~E~l-------n~KL~~ELae~Kss~~~a~kelE~ERKaRellE~v---CdELAk 340 (699)
|-..++..+.+|+.||+.++..-.++..- -.-|-.||..+++-+..+. +.+.++++.+.++ -+++..
T Consensus 303 E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~---~~e~~~k~~~~~l~~~Lqql~~ 379 (522)
T PF05701_consen 303 EASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAK---AEEEKAKEAMSELPKALQQLSS 379 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH---hhhcchhhhHHHHHHHHHHHHH
Confidence 44456666666666666665433222111 1122223333332222221 1233344433322 233444
Q ss_pred hhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHHhHHHhhhhhhhhhhhhhHHHhHHHHHHHHHHHHHHhh
Q 005373 341 EIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSS 412 (699)
Q Consensus 341 eI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~eLE~FL~s 412 (699)
+..+-+.+.+.++.+..+++.|++.=+..+.-+| +||..|.-.++.-.+.-.....+|.+.-..
T Consensus 380 Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E--------~rL~aa~ke~eaaKasEa~Ala~ik~l~e~ 443 (522)
T PF05701_consen 380 EAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAE--------ERLEAALKEAEAAKASEALALAEIKALSES 443 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4555555666666666666666666666666655 455555555555455555566666664443
No 22
>PRK02224 chromosome segregation protein; Provisional
Probab=95.46 E-value=4.9 Score=47.65 Aligned_cols=72 Identities=26% Similarity=0.344 Sum_probs=35.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhccHHHHHHHHHhhHHHHhhh
Q 005373 292 NRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKE-------IGEDKAEVEALKRESMKLREEV 363 (699)
Q Consensus 292 ~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAke-------I~edkaEVe~LKres~k~reE~ 363 (699)
....++.-+..|-.++++....+..+-..++..+..-.-+++-.+++... +.++...+..+..+...+++++
T Consensus 350 ~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~ 428 (880)
T PRK02224 350 DADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRERE 428 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33333444444444555555555555555555555555555555555333 3445555555555544444333
No 23
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.16 E-value=4.6 Score=46.94 Aligned_cols=129 Identities=22% Similarity=0.281 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHH------HH---HHHHHHHHHHHHHHHHhhhhHHH
Q 005373 228 LEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHE------KI---RAFIDDLKAEISRERKNRQRIEI 298 (699)
Q Consensus 228 Lk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~e------ki---~a~i~slk~ELe~ERk~Rkr~E~ 298 (699)
-.+||-.||.-|.+-.+++-....+|..|--.+.+=|.-|-.++++ ++ ...+-.+.+|+.-=+...+.+|.
T Consensus 90 ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~ 169 (546)
T KOG0977|consen 90 YEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALED 169 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 3566666666666666666555555555555555555555444332 22 35677888888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----ccHHHHHHHHHhh
Q 005373 299 VNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIG----EDKAEVEALKRES 356 (699)
Q Consensus 299 ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~----edkaEVe~LKres 356 (699)
-...|.+|..-....+..+.+.|+.|.-.|.-++.-|..|-.+|. .++.||+++++..
T Consensus 170 e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~ 231 (546)
T KOG0977|consen 170 ELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKA 231 (546)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 999999999999999999999999999999888888887776664 4556666665543
No 24
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.87 E-value=3.4 Score=46.06 Aligned_cols=46 Identities=20% Similarity=0.339 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhhccHHHHHHH
Q 005373 307 LADAKVSAKRYMQDYEKERKERELIEE--VCDELAKEIGEDKAEVEAL 352 (699)
Q Consensus 307 Lae~Kss~~~a~kelE~ERKaRellE~--vCdELAkeI~edkaEVe~L 352 (699)
|.+++..+..+-.+++.-.+....++. .|.---+.+.+...++..|
T Consensus 257 L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~~~~~~~l 304 (562)
T PHA02562 257 LNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKI 304 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCcHHHHHHH
Confidence 444455555555555555555555544 4444333443333333333
No 25
>PRK09039 hypothetical protein; Validated
Probab=94.80 E-value=3.5 Score=44.80 Aligned_cols=140 Identities=16% Similarity=0.265 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLV 304 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~ 304 (699)
|+.++.||+...++|.+|=.--...+ .....+...|..|+.+|+.=+..|.++|.....+.
T Consensus 48 i~~~~~eL~~L~~qIa~L~e~L~le~-------------------~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~ 108 (343)
T PRK09039 48 ISGKDSALDRLNSQIAELADLLSLER-------------------QGNQDLQDSVANLRASLSAAEAERSRLQALLAELA 108 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 78899999999999887432221111 12244555566666666655566666666555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHHhHHHhhhhh
Q 005373 305 NELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMK 384 (699)
Q Consensus 305 ~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQMK 384 (699)
....+++..+...-.+|..++. +-.|--..|.-.+++|++||..... +|.-
T Consensus 109 ~~~~~~~~~~~~l~~~L~~~k~-------~~se~~~~V~~L~~qI~aLr~Qla~----------------------le~~ 159 (343)
T PRK09039 109 GAGAAAEGRAGELAQELDSEKQ-------VSARALAQVELLNQQIAALRRQLAA----------------------LEAA 159 (343)
T ss_pred hhcchHHHHHHHHHHHHHHHHH-------HHHHhhHHHHHHHHHHHHHHHHHHH----------------------HHHH
Confidence 4444444444444333333322 2333333444455555555554333 3445
Q ss_pred hhhhhhhhHHHhHHHHHHHHHHHHHHhh
Q 005373 385 LVDAKVAVEQKYSQMNKLVAELEAFLSS 412 (699)
Q Consensus 385 L~dAk~~leeK~s~ldkL~~eLE~FL~s 412 (699)
|.+++....+....++.|..+|+.=|..
T Consensus 160 L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 160 LDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555566666666666665544
No 26
>PRK02224 chromosome segregation protein; Provisional
Probab=94.76 E-value=8.4 Score=45.73 Aligned_cols=8 Identities=25% Similarity=0.634 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 005373 236 RTRIQELE 243 (699)
Q Consensus 236 r~rI~eL~ 243 (699)
+..+.+|.
T Consensus 212 ~~~l~el~ 219 (880)
T PRK02224 212 ESELAELD 219 (880)
T ss_pred HHHHHHHH
Confidence 33333333
No 27
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.35 E-value=3.2 Score=50.54 Aligned_cols=124 Identities=24% Similarity=0.349 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLV 304 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~ 304 (699)
|.-|..+|+-+|.+-.|=.. -=+|+|. ||=--|--..||+| |-..+-+|..||-++|+.-+.+-..-.++.
T Consensus 233 vrdLtEkLetlR~kR~EDk~----Kl~Elek-mkiqleqlqEfkSk----im~qqa~Lqrel~raR~e~keaqe~ke~~k 303 (1243)
T KOG0971|consen 233 VRDLTEKLETLRLKRAEDKA----KLKELEK-MKIQLEQLQEFKSK----IMEQQADLQRELKRARKEAKEAQEAKERYK 303 (1243)
T ss_pred HHHHHHHHHHHHhhhhhhHH----HHHHHHH-HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777654332111 1112222 11112223446664 556667899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhh
Q 005373 305 NELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVD 364 (699)
Q Consensus 305 ~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~reE~E 364 (699)
.||+|+--++-=+. =.+|+.|+=.|-|-.++.-.+..|++|--+.+=++.|++
T Consensus 304 ~emad~ad~iEmaT-------ldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEme 356 (1243)
T KOG0971|consen 304 EEMADTADAIEMAT-------LDKEMAEERAESLQQEVEALKERVDELETDLEILKAEME 356 (1243)
T ss_pred HHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999876655443 334455555666666666666666666555555555554
No 28
>PRK11637 AmiB activator; Provisional
Probab=94.10 E-value=7.9 Score=42.72 Aligned_cols=39 Identities=13% Similarity=0.283 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHH
Q 005373 224 MVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSE 262 (699)
Q Consensus 224 lv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaE 262 (699)
-+..|..+|..+...|.++.++......+|+.+-+++.+
T Consensus 76 ~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~ 114 (428)
T PRK11637 76 QLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAK 114 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555554444444444444433
No 29
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.03 E-value=21 Score=44.36 Aligned_cols=139 Identities=24% Similarity=0.327 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHH-------HHHHHhhh
Q 005373 225 VAALEAEVEQARTRIQELETERRSS---KKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEI-------SRERKNRQ 294 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~---k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~EL-------e~ERk~Rk 294 (699)
+.+.+.||++.-.+|+.|+.-.+.. +.+++-.+..++=-+.-...-+.-++-+.++.+.+++ ...++.-+
T Consensus 686 ~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k 765 (1174)
T KOG0933|consen 686 LRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALK 765 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777777776655433 2345555555444433334445555555555554444 34444444
Q ss_pred hHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhh
Q 005373 295 RIEIVNSK------------------LVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRES 356 (699)
Q Consensus 295 r~E~ln~K------------------L~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres 356 (699)
..+.--.. |.+||..+|.-+...-+++|+-....+.|.--|++|-++|..+|...+.+....
T Consensus 766 ~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~ 845 (1174)
T KOG0933|consen 766 KCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQI 845 (1174)
T ss_pred HHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433333 344455555555555555666666667777777777777777777777776665
Q ss_pred HHHHhhh
Q 005373 357 MKLREEV 363 (699)
Q Consensus 357 ~k~reE~ 363 (699)
..+-.|+
T Consensus 846 ~~l~~e~ 852 (1174)
T KOG0933|consen 846 SSLKSEL 852 (1174)
T ss_pred HHHHHHH
Confidence 5544333
No 30
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=93.76 E-value=15 Score=46.19 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=20.0
Q ss_pred hhhhhhhhhHHHhHHHHHHHHHHHHHHhh
Q 005373 384 KLVDAKVAVEQKYSQMNKLVAELEAFLSS 412 (699)
Q Consensus 384 KL~dAk~~leeK~s~ldkL~~eLE~FL~s 412 (699)
+..+-.-+|+.|-++|..|..+||..|+.
T Consensus 1718 ~y~~~~~~L~~~~aeL~~Le~r~~~vl~~ 1746 (1758)
T KOG0994|consen 1718 EYLRNEQALEDKAAELAGLEKRVESVLDH 1746 (1758)
T ss_pred HHhhhhHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34444446777778888888888877765
No 31
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.52 E-value=9.7 Score=38.70 Aligned_cols=47 Identities=11% Similarity=0.308 Sum_probs=33.0
Q ss_pred ChHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 005373 201 TPAEVRQIYSHMKHLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKK 252 (699)
Q Consensus 201 ts~ellkvlnri~leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~e 252 (699)
.+.++-..||.| -..|+.+|+.|+.|+..-+.......+.-.....+
T Consensus 10 af~~iK~YYndI-----T~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~e 56 (201)
T PF13851_consen 10 AFQEIKNYYNDI-----TLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQE 56 (201)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677788888 66799999999999988877655554443333333
No 32
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=93.40 E-value=13 Score=45.19 Aligned_cols=49 Identities=18% Similarity=0.321 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-----------hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 271 EHEKIRAFIDDLKAEISRERKNR-----------QRIEIVNSKLVNELADAKVSAKRYMQ 319 (699)
Q Consensus 271 E~eki~a~i~slk~ELe~ERk~R-----------kr~E~ln~KL~~ELae~Kss~~~a~k 319 (699)
|.--..-.|..++.||+.+++.| +=++..|.||.++.+++..++..+..
T Consensus 285 ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarr 344 (1265)
T KOG0976|consen 285 ELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARR 344 (1265)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566888999999999866 44688999999999998887765543
No 33
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=93.35 E-value=29 Score=43.65 Aligned_cols=47 Identities=19% Similarity=0.348 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhh
Q 005373 223 SMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRS 269 (699)
Q Consensus 223 Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKs 269 (699)
..|..++.++.+++..++......+..+.+.+.+-.++.+++...+.
T Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 681 (1201)
T PF12128_consen 635 KKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKE 681 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666655555555555555554444444444444443
No 34
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=93.10 E-value=20 Score=41.14 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=14.3
Q ss_pred hhhhhhhhhhhhhHHHhHHHHHHHHHHH
Q 005373 380 RVQMKLVDAKVAVEQKYSQMNKLVAELE 407 (699)
Q Consensus 380 RVQMKL~dAk~~leeK~s~ldkL~~eLE 407 (699)
.+.+-|.+++..|+.-...+..|+..++
T Consensus 285 s~~~ELe~ak~~L~~~k~E~~~L~~~ve 312 (522)
T PF05701_consen 285 SAKKELEEAKKELEKAKEEASSLRASVE 312 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666655555444444444433
No 35
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=92.99 E-value=9.6 Score=44.72 Aligned_cols=109 Identities=19% Similarity=0.264 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHHh
Q 005373 300 NSKLVNELADAKVSAKRYMQDYEKERKERELIEEV---CDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVW 376 (699)
Q Consensus 300 n~KL~~ELae~Kss~~~a~kelE~ERKaRellE~v---CdELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvW 376 (699)
...+..|+.+.+......-++|.--+|+-+||.+- -..|-.-|..-.+.+..|..+-++.|..+.+|-+.|.-+-.=
T Consensus 358 ~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~ 437 (594)
T PF05667_consen 358 LKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASN 437 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 33344444444444444444444444444444321 133333344445555555666556666665555555532221
Q ss_pred HHH----------hhhhhhhhhhhhhHHHhHHHHHHHHHHHH
Q 005373 377 REE----------RVQMKLVDAKVAVEQKYSQMNKLVAELEA 408 (699)
Q Consensus 377 REE----------RVQMKL~dAk~~leeK~s~ldkL~~eLE~ 408 (699)
++. .++.+.-+....+..|.....+|..++|.
T Consensus 438 ~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~ 479 (594)
T PF05667_consen 438 RESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEK 479 (594)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111 12222223333445566666666666664
No 36
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=92.99 E-value=9.3 Score=36.99 Aligned_cols=94 Identities=20% Similarity=0.369 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 005373 225 VAALEAEVEQARTRI-------QELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIE 297 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI-------~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E 297 (699)
+.+|+.|.+.|..++ ++|+++.-...++|..|-+++.-= -.+-+++...|..++..|+.--+....+|
T Consensus 2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~l-----E~eld~~~~~l~~~k~~lee~~~~~~~~E 76 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQL-----EEELDKLEEQLKEAKEKLEESEKRKSNAE 76 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhHHHHHHhHH
Confidence 356777766665554 455555555556677776654321 22668999999999999999999999999
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 005373 298 IVNSKLV---NELADAKVSAKRYMQDYEK 323 (699)
Q Consensus 298 ~ln~KL~---~ELae~Kss~~~a~kelE~ 323 (699)
.||+|+. .||..+...+.-+...|..
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e 105 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLRE 105 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999963 5666666555555544443
No 37
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=92.80 E-value=13 Score=38.19 Aligned_cols=137 Identities=23% Similarity=0.328 Sum_probs=80.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh--HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 005373 221 AVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKV--SEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEI 298 (699)
Q Consensus 221 ~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~Kql--aEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ 298 (699)
.-.-|..|...|..|.....+..+--.-....+..+-..| +++++ +.+..-|..|..+|..=...-+.+|.
T Consensus 90 ~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~-------e~~E~ki~eLE~el~~~~~~lk~lE~ 162 (237)
T PF00261_consen 90 DEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERA-------EAAESKIKELEEELKSVGNNLKSLEA 162 (237)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhchhHHHHHHHHHHHHHHHHHhhh
Confidence 3344555555666666555555554444444444433333 33433 44555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhh
Q 005373 299 VNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVD 364 (699)
Q Consensus 299 ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~reE~E 364 (699)
.-.+...-......-+...-..|..=-..-+..|.-|..|-+.|...+.++...|.+...+..|++
T Consensus 163 ~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld 228 (237)
T PF00261_consen 163 SEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELD 228 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554444444444444444444444556777888888888888888888888888888877774
No 38
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=92.62 E-value=32 Score=43.20 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005373 225 VAALEAEVEQARTRIQELETE 245 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E 245 (699)
...+...|..+...|+++..+
T Consensus 623 ~~~~e~~l~~~~~~~~~~~~~ 643 (1201)
T PF12128_consen 623 QEELEKQLKQINKKIEELKRE 643 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 39
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=92.25 E-value=34 Score=41.95 Aligned_cols=79 Identities=15% Similarity=0.243 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhhccHHHHHHHHHhh---HHH
Q 005373 294 QRIEIVNSKLVNELADAKVSAKRYMQDYEKERKE-----------RELIEEVCDELAKEIGEDKAEVEALKRES---MKL 359 (699)
Q Consensus 294 kr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKa-----------RellE~vCdELAkeI~edkaEVe~LKres---~k~ 359 (699)
+.++.-|..|++||++-.--++-.-.+|+.++++ +..++.---+|.++|.+...++-+-|++. .+.
T Consensus 273 ~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk 352 (1265)
T KOG0976|consen 273 RQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDK 352 (1265)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH
Confidence 4678889999999998777777666777777764 56777778888888888888777766663 334
Q ss_pred HhhhhhhHHHHHH
Q 005373 360 REEVDDERKMLQM 372 (699)
Q Consensus 360 reE~EeER~MLqm 372 (699)
+.|+|++|-|+-|
T Consensus 353 ~~eLEKkrd~al~ 365 (1265)
T KOG0976|consen 353 LNELEKKRDMALM 365 (1265)
T ss_pred HHHHHHHHHHHHH
Confidence 5788888888754
No 40
>PRK03918 chromosome segregation protein; Provisional
Probab=92.23 E-value=30 Score=41.04 Aligned_cols=19 Identities=16% Similarity=0.405 Sum_probs=7.9
Q ss_pred HHHHHhhhccHHHHHHHHH
Q 005373 336 DELAKEIGEDKAEVEALKR 354 (699)
Q Consensus 336 dELAkeI~edkaEVe~LKr 354 (699)
.+|-+.+..++++++.+..
T Consensus 310 ~~l~~~~~~l~~~~~~l~~ 328 (880)
T PRK03918 310 REIEKRLSRLEEEINGIEE 328 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444433
No 41
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=91.76 E-value=2.2 Score=43.55 Aligned_cols=74 Identities=24% Similarity=0.498 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhh
Q 005373 294 QRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERE-----------LIEEVCDELAKEIGEDKAEVEALKRESMKLREE 362 (699)
Q Consensus 294 kr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRe-----------llE~vCdELAkeI~edkaEVe~LKres~k~reE 362 (699)
.+--..+.|+..-|+.++..-.+.+.+||.||+... +||.-.+.|-+.|...++.+..+-++..|...-
T Consensus 91 ~~qk~~q~Rm~~qL~~aE~rhrr~i~eLe~EKrkh~~~~aqgDD~t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~ 170 (192)
T PF09727_consen 91 EHQKKMQRRMLEQLAAAEKRHRRTIQELEEEKRKHAEDMAQGDDFTNLLEKERERLKQQLEQEKAQQKKLEKEHKKLVSQ 170 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456788999999999999999999999999876 555566666666666666666665555555555
Q ss_pred hhhhH
Q 005373 363 VDDER 367 (699)
Q Consensus 363 ~EeER 367 (699)
+++|+
T Consensus 171 l~eE~ 175 (192)
T PF09727_consen 171 LEEER 175 (192)
T ss_pred HHHHH
Confidence 54444
No 42
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=91.72 E-value=15 Score=36.34 Aligned_cols=66 Identities=21% Similarity=0.418 Sum_probs=47.2
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHH
Q 005373 291 KNRQRIEIVNSKLVNELADAKVSAKR-------YMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMK 358 (699)
Q Consensus 291 k~Rkr~E~ln~KL~~ELae~Kss~~~-------a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k 358 (699)
++++.++.++.+|..|+..++..++- -+++.......+ +.++-.++..+|.+.+.++|.+|-+..+
T Consensus 84 ~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~k--i~e~~~ki~~ei~~lr~~iE~~K~~~lr 156 (177)
T PF07798_consen 84 KLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELK--IQELNNKIDTEIANLRTEIESLKWDTLR 156 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777888888888888877775542 233333333333 7888889999999999999998877554
No 43
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=91.68 E-value=10 Score=45.90 Aligned_cols=93 Identities=16% Similarity=0.258 Sum_probs=55.0
Q ss_pred CCChHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHH
Q 005373 199 LKTPAEVRQIYSHMKHLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAF 278 (699)
Q Consensus 199 lkts~ellkvlnri~leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~ 278 (699)
++.+.+...|+++++ |-..--++-+..+--+||.+-..|+--.--++....+.+.+++...+=-..--+||+..|...
T Consensus 846 ~kns~k~~ei~s~lk--e~r~e~~~~~~~~~~~id~lv~~IK~~~~tq~~~~~~~d~~~~~~e~~~~~l~sk~~q~~~e~ 923 (1259)
T KOG0163|consen 846 LKNSLKTIEILSRLK--EGREEIISGANSTYRQIDDLVKKIKMPRITQREMNSEYDVAVKNYEKLVKRLDSKEQQQIEEL 923 (1259)
T ss_pred HHhhHHHHHHHHHHh--cchHHHHhhhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 667778888888865 333344566777778888887777742223333444555555544433333334555444433
Q ss_pred --HHHHHHHHHHHHHhh
Q 005373 279 --IDDLKAEISRERKNR 293 (699)
Q Consensus 279 --i~slk~ELe~ERk~R 293 (699)
++.+.+.+|.||+.|
T Consensus 924 er~rk~qE~~E~ER~rr 940 (1259)
T KOG0163|consen 924 ERLRKIQELAEAERKRR 940 (1259)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 566677788888754
No 44
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.44 E-value=22 Score=37.84 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005373 225 VAALEAEVEQARTRIQELETER 246 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~ 246 (699)
+..|+.++.++++++..|.++.
T Consensus 83 l~~l~~~~~~l~a~~~~l~~~~ 104 (423)
T TIGR01843 83 AAELESQVLRLEAEVARLRAEA 104 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555554433
No 45
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=91.39 E-value=38 Score=43.00 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Q 005373 270 REHEKIRAFIDDLKAEISRERKNR 293 (699)
Q Consensus 270 kE~eki~a~i~slk~ELe~ERk~R 293 (699)
+.+..+.++.++++.|.++++|+|
T Consensus 543 ~~rk~le~~~~d~~~e~~~~~kl~ 566 (1317)
T KOG0612|consen 543 SLRKQLEEAELDMRAESEDAGKLR 566 (1317)
T ss_pred HHHHHHHHhhhhhhhhHHHHhhHh
Confidence 344556666777777777777766
No 46
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.32 E-value=17 Score=41.47 Aligned_cols=97 Identities=24% Similarity=0.376 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---------------
Q 005373 278 FIDDLKAEISRER-KNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKE-RELIEEVCDELAK--------------- 340 (699)
Q Consensus 278 ~i~slk~ELe~ER-k~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKa-RellE~vCdELAk--------------- 340 (699)
-+.++-++|+.|+ |+-.++|.+--+|..|-.. +.-....|.-.++|+++ -+|||++-.||-.
T Consensus 322 rlksl~dklaee~qr~sd~LE~lrlql~~eq~l-~~rm~d~Lrrfq~ekeatqELieelrkelehlr~~kl~~a~p~rgr 400 (502)
T KOG0982|consen 322 RLKSLADKLAEEDQRSSDLLEALRLQLICEQKL-RVRMNDILRRFQEEKEATQELIEELRKELEHLRRRKLVLANPVRGR 400 (502)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCc
Confidence 3455666777776 5666677666666555433 33344444446666665 4677777666521
Q ss_pred ---hhhccHHHHHHHHHhhHHHHhhhhhhHHH------HHHHHHh
Q 005373 341 ---EIGEDKAEVEALKRESMKLREEVDDERKM------LQMAEVW 376 (699)
Q Consensus 341 ---eI~edkaEVe~LKres~k~reE~EeER~M------LqmAEvW 376 (699)
..-+..+||+.||++..++ .|..+|+.| +|++--|
T Consensus 401 sSaRe~eleqevkrLrq~nr~l-~eqneelngtilTls~q~lkn~ 444 (502)
T KOG0982|consen 401 SSAREIELEQEVKRLRQPNRIL-SEQNEELNGTILTLSTQFLKNW 444 (502)
T ss_pred hhHHHHHHHHHHHHhccccchh-hhhhhhhhhhhhhHHHHHHHHH
Confidence 1236788999999988876 667777765 4556666
No 47
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=91.27 E-value=42 Score=40.82 Aligned_cols=56 Identities=30% Similarity=0.335 Sum_probs=41.0
Q ss_pred HHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHHhHHHhhhhhhhhhhhhhHHHhHHHHHH
Q 005373 335 CDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKL 402 (699)
Q Consensus 335 CdELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL 402 (699)
|-+|...|...+.+|...+.++.+.+-|||.=+.||+-+| ..|...+.|...|.+.
T Consensus 543 ~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E------------~EK~~ke~ki~~Leke 598 (775)
T PF10174_consen 543 NAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAE------------NEKNDKEKKIGELEKE 598 (775)
T ss_pred CHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHhHHHHHHHHHHH
Confidence 4466777888899999999999999999987777887665 3455555555444443
No 48
>PRK11637 AmiB activator; Provisional
Probab=91.25 E-value=27 Score=38.60 Aligned_cols=10 Identities=20% Similarity=0.351 Sum_probs=4.7
Q ss_pred CCCCcccccc
Q 005373 650 DSGNPHVTRG 659 (699)
Q Consensus 650 ds~Nphv~RG 659 (699)
.+.-||+.=+
T Consensus 403 ~~~~~~l~fe 412 (428)
T PRK11637 403 GQGRPSLYFE 412 (428)
T ss_pred CCCCCeEEEE
Confidence 3344666433
No 49
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=90.99 E-value=5.4 Score=46.86 Aligned_cols=121 Identities=23% Similarity=0.311 Sum_probs=74.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 005373 220 SAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIV 299 (699)
Q Consensus 220 s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~l 299 (699)
.-.+.|..+-.||+.|+.+|..|++| +++|.-|++.....-+...-+-| +.+.--|.. .+++
T Consensus 232 ~k~aev~lim~eLe~aq~ri~~lE~e-------~e~L~~ql~~~N~~~~~~~~~~i----~~~~~~L~~-------kd~~ 293 (629)
T KOG0963|consen 232 AKAAEVSLIMTELEDAQQRIVFLERE-------VEQLREQLAKANSSKKLAKIDDI----DALGSVLNQ-------KDSE 293 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhhhhhhccCCch----HHHHHHHhH-------HHHH
Confidence 34567888889999999999999885 55555555554433322211222 222222332 7888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhccHHHHHHHHHh--hHHHHhhhhhhHHHHH
Q 005373 300 NSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELA---KEIGEDKAEVEALKRE--SMKLREEVDDERKMLQ 371 (699)
Q Consensus 300 n~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELA---keI~edkaEVe~LKre--s~k~reE~EeER~MLq 371 (699)
|.+|..++-..++|+.. .+|..|.++. ++...+..++++|+.+ +....+|+..|-.+|+
T Consensus 294 i~~L~~di~~~~~S~~~-------------e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk 357 (629)
T KOG0963|consen 294 IAQLSNDIERLEASLVE-------------EREKHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILK 357 (629)
T ss_pred HHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHH
Confidence 88888888776666543 3455555443 3444555666666665 3445788888888887
No 50
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.91 E-value=27 Score=43.41 Aligned_cols=31 Identities=16% Similarity=0.366 Sum_probs=25.6
Q ss_pred HHHhhhhhhhhhhhhhHHHhHHHHHHHHHHH
Q 005373 377 REERVQMKLVDAKVAVEQKYSQMNKLVAELE 407 (699)
Q Consensus 377 REERVQMKL~dAk~~leeK~s~ldkL~~eLE 407 (699)
+++-.||-+.+++..+++|...+..|...|.
T Consensus 412 ~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~ 442 (1200)
T KOG0964|consen 412 QENILQKEIEDLESELKEKLEEIKELESSIN 442 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 4566899999999999999998888776654
No 51
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=90.87 E-value=22 Score=36.71 Aligned_cols=69 Identities=23% Similarity=0.428 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 270 REHEKIRAFIDDLKAEISRERKNRQR-IEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAK 340 (699)
Q Consensus 270 kE~eki~a~i~slk~ELe~ERk~Rkr-~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAk 340 (699)
.--+.+..-|..|...+..|+.-|.. .|.++..|+++|.+...+|..-... ++.+...|+..|++.+.+
T Consensus 92 ~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~--R~erE~~i~krl~e~~~~ 161 (247)
T PF06705_consen 92 SRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNE--REEREENILKRLEEEENR 161 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 33445556678888899999988776 8889999999998877666554322 222333455555554443
No 52
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=90.80 E-value=35 Score=43.27 Aligned_cols=44 Identities=23% Similarity=0.317 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhh
Q 005373 319 QDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREE 362 (699)
Q Consensus 319 kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~reE 362 (699)
+.|++-+..-...|....-.++.|++.+.-|++||++.++.-.|
T Consensus 1598 ~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~ 1641 (1758)
T KOG0994|consen 1598 QLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAE 1641 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 33444444444455555556677889999999999887765333
No 53
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=90.78 E-value=2 Score=46.23 Aligned_cols=62 Identities=24% Similarity=0.316 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhh-hhhHHHHHHHH
Q 005373 313 SAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEV-DDERKMLQMAE 374 (699)
Q Consensus 313 s~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~reE~-EeER~MLqmAE 374 (699)
.+.+..++-+...+.=+-+|+-+++|.++|.+.++|...|+.+-.+.|.+. ...+.++++.+
T Consensus 51 el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~ 113 (314)
T PF04111_consen 51 ELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQE 113 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444455777788888888888888888877666555554 44444444444
No 54
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=90.76 E-value=7.1 Score=43.56 Aligned_cols=160 Identities=32% Similarity=0.412 Sum_probs=86.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhh--------------HHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 005373 221 AVSMVAALEAEVEQARTRIQELETERRSS--------------KKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEI 286 (699)
Q Consensus 221 ~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~--------------k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~EL 286 (699)
..+++.|+.. +-|--|+.|+++++.. .++-+.|-.||.=|+. |..|+.-+-+-|--.|
T Consensus 105 ~~s~LaAaE~---khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~-----e~kK~E~~k~Kl~~qL 176 (561)
T KOG1103|consen 105 AASLLAAAEK---KHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIE-----EKKKAEIAKDKLEMQL 176 (561)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 3455555532 4466788888887653 2333344444444433 2223333334455568
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHhhh---ccHHHHHHHH
Q 005373 287 SRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDEL----------AKEIG---EDKAEVEALK 353 (699)
Q Consensus 287 e~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdEL----------AkeI~---edkaEVe~LK 353 (699)
+.||+ |-|.+..-|.-|- |.++. |--|.-.|+-+||=++-.+- |-+-. ..+|.||
T Consensus 177 eeEk~---RHeqis~mLilEc---Kka~~---KaaEegqKA~ei~Lklekdksr~~k~eee~aaERerglqteaqve--- 244 (561)
T KOG1103|consen 177 EEEKK---RHEQISLMLILEC---KKALL---KAAEEGQKAEEIMLKLEKDKSRTKKGEEEAAAERERGLQTEAQVE--- 244 (561)
T ss_pred HHHHH---HHHHHHHHHHHHH---HHHHH---HHHHhhhhHHHHHHhhccCccccCCChHHHHHHHhhccchHHHHH---
Confidence 88875 4455555565443 33333 33455566666665443322 11111 1233333
Q ss_pred HhhHHHHhhhhhhHHHHHHHHHhHHHhhhhhhhhhhhhhHHHhHHHHHHHHHHHHHHhh
Q 005373 354 RESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSS 412 (699)
Q Consensus 354 res~k~reE~EeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~eLE~FL~s 412 (699)
|..+|++.||..|+ |+.=|+|.-|--| -+-+.-|.+.+.+||+-+..
T Consensus 245 ----k~i~EfdiEre~LR-Ael~ree~r~K~l-------KeEmeSLkeiVkdlEA~hQh 291 (561)
T KOG1103|consen 245 ----KLIEEFDIEREFLR-AELEREEKRQKML-------KEEMESLKEIVKDLEADHQH 291 (561)
T ss_pred ----HHHHHHHHHHHHHH-HHHHHHHHHHHHH-------HHHHHHHHHHHhhhhhhhhh
Confidence 45678888888887 6777888777433 33344566666777776654
No 55
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=90.69 E-value=48 Score=40.40 Aligned_cols=161 Identities=17% Similarity=0.283 Sum_probs=78.2
Q ss_pred HHHHHhhhhcc-cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHh--hhhHHHHHHHHH
Q 005373 203 AEVRQIYSHMK-HLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAW--RSREHEKIRAFI 279 (699)
Q Consensus 203 ~ellkvlnri~-leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~aw--KskE~eki~a~i 279 (699)
.|++....++- +.+++...=.-|..|+..|-.++.+..-|..+-...+.+++.-..++.---..- =..|......-|
T Consensus 301 ~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei 380 (775)
T PF10174_consen 301 SELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEI 380 (775)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666 556665545667777777777777777777666555555554433332111000 001111222223
Q ss_pred HHHHHHHHH-HH---HhhhhHHHHHHHH---HHHHHHHHHHHH----------------HHHHHHHHHHHH-HHHHHHHH
Q 005373 280 DDLKAEISR-ER---KNRQRIEIVNSKL---VNELADAKVSAK----------------RYMQDYEKERKE-RELIEEVC 335 (699)
Q Consensus 280 ~slk~ELe~-ER---k~Rkr~E~ln~KL---~~ELae~Kss~~----------------~a~kelE~ERKa-RellE~vC 335 (699)
..|++.|+. |+ .+.+++|.|..-| .+.|.+.+.-+. .++.|+++-+.. ++.-+..+
T Consensus 381 ~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e 460 (775)
T PF10174_consen 381 EDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAE 460 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333321 21 2233433333222 233333333333 555555544333 22223335
Q ss_pred HHHHHhhhccHHHHHHHHHhhHHHHhhh
Q 005373 336 DELAKEIGEDKAEVEALKRESMKLREEV 363 (699)
Q Consensus 336 dELAkeI~edkaEVe~LKres~k~reE~ 363 (699)
-+..-++..|+.++..++.+...++.++
T Consensus 461 ~e~~Eele~~~~e~~~lk~~~~~LQ~eL 488 (775)
T PF10174_consen 461 KERQEELETYQKELKELKAKLESLQKEL 488 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5556666677777777777766666666
No 56
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=90.59 E-value=52 Score=40.65 Aligned_cols=112 Identities=20% Similarity=0.265 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhH-HHHHHhhhhHHHHHHHHHHHHHHH-HHHHHHhhhhHHHHHH
Q 005373 224 MVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVS-EEKAAWRSREHEKIRAFIDDLKAE-ISRERKNRQRIEIVNS 301 (699)
Q Consensus 224 lv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~Kqla-EEK~awKskE~eki~a~i~slk~E-Le~ERk~Rkr~E~ln~ 301 (699)
-+.+|++||+++|..-++-..|++..++++..|...-. -||+--+ |+++... |--|.+-- .+.....
T Consensus 366 ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~----------~ee~e~~~l~~e~ry~-klkek~t 434 (980)
T KOG0980|consen 366 QLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVL----------VEEAENKALAAENRYE-KLKEKYT 434 (980)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHhHHHHHHHHHHHHH-HHHHHHH
Confidence 35677777777777666666666655554444433211 1222111 2221111 11111111 1222344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccH
Q 005373 302 KLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDK 346 (699)
Q Consensus 302 KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edk 346 (699)
.|..+=+++..-+....|.+|.+..+-.-++++--+|+..|.+..
T Consensus 435 ~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~ 479 (980)
T KOG0980|consen 435 ELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQ 479 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 555556666666667777777777777766666666666555433
No 57
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=90.56 E-value=9.8 Score=36.21 Aligned_cols=53 Identities=15% Similarity=0.237 Sum_probs=30.6
Q ss_pred ChHHHHHhhhhcc-cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 005373 201 TPAEVRQIYSHMK-HLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKL 253 (699)
Q Consensus 201 ts~ellkvlnri~-leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~ei 253 (699)
+...+-.|+|-|| |.-++..++..-..|...+..-+.-+..|.......+.++
T Consensus 29 ~~~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~ 82 (151)
T PF11559_consen 29 SEDNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQL 82 (151)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4456677788887 6666666666556665555555555555544444433333
No 58
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=90.31 E-value=23 Score=36.09 Aligned_cols=16 Identities=25% Similarity=0.563 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 005373 274 KIRAFIDDLKAEISRE 289 (699)
Q Consensus 274 ki~a~i~slk~ELe~E 289 (699)
.++..|+.++.+++..
T Consensus 74 ~l~~~i~~~~~~i~~~ 89 (302)
T PF10186_consen 74 RLRERIERLRKRIEQK 89 (302)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 59
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.15 E-value=21 Score=42.82 Aligned_cols=196 Identities=21% Similarity=0.226 Sum_probs=110.1
Q ss_pred HHHHHhhhhcc-cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHH-----H----HHHhhhhHH
Q 005373 203 AEVRQIYSHMK-HLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSE-----E----KAAWRSREH 272 (699)
Q Consensus 203 ~ellkvlnri~-leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaE-----E----K~awKskE~ 272 (699)
..+..=+++.| ...++++ -|.-+..-|-+-...++.+.+.+..+..++.+|++.+-- + +.---.|+.
T Consensus 359 ~~~~~r~~q~lke~~k~~~---~ite~~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl~~~l~~~tk~r 435 (716)
T KOG4593|consen 359 ARGLERARQLLKEELKQVA---GITEEETKLKELHETLARRLQKRALLLTQERDLNRAILGSKDDEKRLAEELPQVTKER 435 (716)
T ss_pred ccchHHHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhHHHHHHH
Confidence 44445556666 4445543 334444555555666777777787777777777765431 1 122335667
Q ss_pred HHHHHHHHHHHHH-HHHH----HHhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 005373 273 EKIRAFIDDLKAE-ISRE----RKNRQR--IEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGED 345 (699)
Q Consensus 273 eki~a~i~slk~E-Le~E----Rk~Rkr--~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~ed 345 (699)
|.+++.|+.+..- ++.| --.+.= -..-+.+|..++.+.++.+...-+++...|+.++++-+- |.+|
T Consensus 436 eqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~-------i~~~ 508 (716)
T KOG4593|consen 436 EQLKGLVQKVDKHSLEMEASMEELYREITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESELLREK-------IEQY 508 (716)
T ss_pred HHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH-------HHHH
Confidence 7777777655321 1111 111111 112355889999999999999999999999999887544 4445
Q ss_pred HHHHHHHHHhhHHHHhhhhhhHHHHHHHHHhHHHh-hhhhhhhh-hhhhHHHhHHHHHHHHHHHHHHh
Q 005373 346 KAEVEALKRESMKLREEVDDERKMLQMAEVWREER-VQMKLVDA-KVAVEQKYSQMNKLVAELEAFLS 411 (699)
Q Consensus 346 kaEVe~LKres~k~reE~EeER~MLqmAEvWREER-VQMKL~dA-k~~leeK~s~ldkL~~eLE~FL~ 411 (699)
..+++.|..++.+++..+ |++.||===.=-.=| |||..-=+ +.. ..|-..+..|++|+++-..
T Consensus 509 ~ke~~~Le~En~rLr~~~--e~~~l~gd~~~~~~rVl~~~~npt~~~~-~~~k~~~e~LqaE~~~lk~ 573 (716)
T KOG4593|consen 509 LKELELLEEENDRLRAQL--ERRLLQGDYEENITRVLHMSTNPTSKAR-QIKKNRLEELQAELERLKE 573 (716)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHhhhhhhhccceeeecCCchHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 555555566655555222 333222100000001 23333333 333 3344578889999988766
No 60
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.82 E-value=7 Score=45.95 Aligned_cols=127 Identities=17% Similarity=0.205 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 005373 224 MVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKL 303 (699)
Q Consensus 224 lv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL 303 (699)
-+.+|+.||++--++|..|+++. |+|.|+|++=-++-+.-----+..-+-.+|.-++.|.-.-+.+-..-
T Consensus 333 Q~~~~~~~~~~~~Tr~Er~Er~~-------D~L~rri~~~~~~~~R~~~s~A~~K~~E~K~~~~~~~~~~r~i~~~~--- 402 (852)
T KOG4787|consen 333 QLELAESQVQHLNTKIERLEKTN-------DHLNKKIVELEADCKRGGVTSAHSKAGEFKLTPEMEKDMSKMIVTIS--- 402 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHhhhhcccchHHHHHHhhhhhcChHhHhHHHHHHHHHH---
Confidence 37899999999999999888753 89999999866655432222222344566777777766555443222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHHhHHHhhh
Q 005373 304 VNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQ 382 (699)
Q Consensus 304 ~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQ 382 (699)
+|.+-+-++.-. +|.=+.-+..|.+|.-.-+-.+-|+.-+ --.|+.|-++.+++=||
T Consensus 403 --~~~~~~~~~s~~-------~r~L~~~~~~~~~~~~~~~s~~~Ei~~~-------------QA~M~E~~Dt~~~~dV~ 459 (852)
T KOG4787|consen 403 --ELERKNLELTTQ-------VKQLETKVTPKPNFVVPSGTTTTELRKE-------------QAQMNELKDTVFKSDVQ 459 (852)
T ss_pred --HHHHhcccHHHH-------HHHHhhccccchhhcCCCcchHHHHHHH-------------HHHHHHHHHHHHHHHHH
Confidence 222323333333 4455567889999987666655554432 12345555555555555
No 61
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.46 E-value=72 Score=40.57 Aligned_cols=27 Identities=11% Similarity=0.294 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 005373 230 AEVEQARTRIQELETERRSSKKKLEHF 256 (699)
Q Consensus 230 ~EL~~Ar~rI~eL~~E~~s~k~eie~l 256 (699)
.+|+..+..+..|..+....+.+|..|
T Consensus 836 ~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 836 HELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444455555
No 62
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=89.38 E-value=19 Score=38.88 Aligned_cols=44 Identities=27% Similarity=0.367 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhh
Q 005373 320 DYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEV 363 (699)
Q Consensus 320 elE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~reE~ 363 (699)
|+-+---+|.-||.+|.||-+.....+.|...+-++-...|.|+
T Consensus 65 E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el 108 (309)
T PF09728_consen 65 ELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKEL 108 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344567888889999998888777776666555544444444
No 63
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=89.37 E-value=37 Score=37.09 Aligned_cols=45 Identities=33% Similarity=0.384 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhh
Q 005373 320 DYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVD 364 (699)
Q Consensus 320 elE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~reE~E 364 (699)
+....++...-+-+=..+||.++.+|..++-.+-++.+.+|.+.+
T Consensus 166 ei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkead 210 (294)
T COG1340 166 EIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEAD 210 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444443334444466777777777777776666665555543
No 64
>PRK04863 mukB cell division protein MukB; Provisional
Probab=89.31 E-value=50 Score=42.88 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=12.4
Q ss_pred hcchhHHHHHHHHhhhhHHH
Q 005373 671 QKNSLKAKLLEARMESQKVQ 690 (699)
Q Consensus 671 qK~SLKaKLleARmesqKvQ 690 (699)
|...+-.++=.+.-+.||.|
T Consensus 794 ~~~~~~~~~~~~~~~~~~~~ 813 (1486)
T PRK04863 794 EREELAERYATLSFDVQKLQ 813 (1486)
T ss_pred HHHHHHHHHHHHhhhHHHHH
Confidence 44455555566677777776
No 65
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=89.09 E-value=22 Score=42.48 Aligned_cols=138 Identities=20% Similarity=0.261 Sum_probs=89.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHH
Q 005373 269 SREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAE 348 (699)
Q Consensus 269 skE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaE 348 (699)
.|+.++...-+-.+..+|+..+...-+.+.. |-. +.+.+..|..-+..|..-+..-.-++.+|+-.-+.|...+++
T Consensus 174 ~k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~---l~~-~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~ 249 (670)
T KOG0239|consen 174 LKESLKLESDLGDLVTELEHVTNSISELESV---LKS-AQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQE 249 (670)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH---hhh-hHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHH
Confidence 3445555555666666666555544433222 111 222233333333344555566667788888888889999999
Q ss_pred HHHHHHhhHHHHhhhhhhHHHHHHHHHhHHHhh-hhhhhhhhhhhHHHh---HHHHHHHHHHHHHHhh
Q 005373 349 VEALKRESMKLREEVDDERKMLQMAEVWREERV-QMKLVDAKVAVEQKY---SQMNKLVAELEAFLSS 412 (699)
Q Consensus 349 Ve~LKres~k~reE~EeER~MLqmAEvWREERV-QMKL~dAk~~leeK~---s~ldkL~~eLE~FL~s 412 (699)
+..||++...+.+++.+-.. -+.+.|..-+. |-.|.++...|-+|+ .+--+|.++|..+...
T Consensus 250 l~~l~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGn 315 (670)
T KOG0239|consen 250 LEELKAELKELNDQVSLLTR--EVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGN 315 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999988877666643333 34577777777 456778888899999 8888899999877655
No 66
>PRK03918 chromosome segregation protein; Provisional
Probab=88.97 E-value=57 Score=38.79 Aligned_cols=10 Identities=0% Similarity=0.189 Sum_probs=4.2
Q ss_pred HHHHHhhhhc
Q 005373 203 AEVRQIYSHM 212 (699)
Q Consensus 203 ~ellkvlnri 212 (699)
.+..+++.+|
T Consensus 145 ~~r~~~~~~~ 154 (880)
T PRK03918 145 ESREKVVRQI 154 (880)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 67
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=88.91 E-value=13 Score=35.00 Aligned_cols=33 Identities=18% Similarity=0.098 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 005373 223 SMVAALEAEVEQARTRIQELETERRSSKKKLEH 255 (699)
Q Consensus 223 Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~ 255 (699)
.+.-.+..+|..+...+.++..=..+++.++++
T Consensus 46 ~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~ 78 (139)
T PF05615_consen 46 FLYERLLKELAQFEFSILKSQLILEMNKREREN 78 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777777776666555555554433
No 68
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=88.83 E-value=49 Score=37.89 Aligned_cols=42 Identities=14% Similarity=0.306 Sum_probs=21.3
Q ss_pred HHHHHhhhhcc--cccccc---hhhhHHHHHHHHHHHHHHHHHHHHH
Q 005373 203 AEVRQIYSHMK--HLDQQV---SAVSMVAALEAEVEQARTRIQELET 244 (699)
Q Consensus 203 ~ellkvlnri~--leeq~~---s~~Slv~aLk~EL~~Ar~rI~eL~~ 244 (699)
.++..++|.+. +.+... ..-++|...+.++++...+|.+|..
T Consensus 226 ~el~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~i~~L~~~l~~l~~ 272 (582)
T PF09731_consen 226 QELVSIFNDLIESINEGNLSESDLNSLIAHAKERIDALQKELAELKE 272 (582)
T ss_pred HHHHHhccchhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777775 223222 1234555555555555555544443
No 69
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=88.81 E-value=52 Score=38.11 Aligned_cols=52 Identities=29% Similarity=0.367 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 272 HEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEK 323 (699)
Q Consensus 272 ~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ 323 (699)
-+.|...|+.|-+-|+.|-.+++.++....+|..-|..++.....+..+++.
T Consensus 284 ~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~ 335 (569)
T PRK04778 284 NEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDR 335 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666666666555555555555555555444444444443
No 70
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.68 E-value=58 Score=38.48 Aligned_cols=113 Identities=21% Similarity=0.330 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH---HH
Q 005373 226 AALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVN---SK 302 (699)
Q Consensus 226 ~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln---~K 302 (699)
++|+.-+..+++-+.+++.-.+.+-++ |.++.+|-. -|--|.++|+..+++|+.-++--+=.=...|.+| -+
T Consensus 269 ~~L~~D~nK~~~y~~~~~~k~~~~~~~----l~~l~~Eie-~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~ 343 (581)
T KOG0995|consen 269 ARLQDDVNKFQAYVSQMKSKKQHMEKK----LEMLKSEIE-EKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNK 343 (581)
T ss_pred HHHHhHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 345555556666666665544444443 444444422 3455778888888888887765544444445554 47
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH------HHHHHHhhh
Q 005373 303 LVNELADAKVSAKRYMQDYEK-ERKERELIEEV------CDELAKEIG 343 (699)
Q Consensus 303 L~~ELae~Kss~~~a~kelE~-ERKaRellE~v------CdELAkeI~ 343 (699)
|-++|.++++.+....|++=. +..++...+.+ |+.+++.|.
T Consensus 344 l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~ 391 (581)
T KOG0995|consen 344 LKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIK 391 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999988887777765422 22233333332 566666553
No 71
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=88.63 E-value=64 Score=39.28 Aligned_cols=80 Identities=33% Similarity=0.525 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHH--HhhHHHHhhhhhhHHHHHHHHHhHHHhhhhhhhhhhhhhHHHhHH
Q 005373 321 YEKERKERELIEEVCDELAKEIGEDKAEVEALK--RESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQ 398 (699)
Q Consensus 321 lE~ERKaRellE~vCdELAkeI~edkaEVe~LK--res~k~reE~EeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ 398 (699)
+.-|.+-|.|. .-|.+-..++.+..-|---|- +|..++ .|+++ +--+|-+.|+| +|..-|..||||...
T Consensus 1090 qKhenqmrdl~-~qce~ni~EL~qlQNEKchlLvEhEtqkl-Kelde--~h~~~~~~w~e-----~l~~rk~~lee~~~~ 1160 (1187)
T KOG0579|consen 1090 QKHENQMRDLK-EQCEENIIELDQLQNEKCHLLVEHETQKL-KELDE--KHHEMRELWQE-----NLIARKTVLEEKFED 1160 (1187)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHH-----hhhhhhhHHHHHHHH
Confidence 33344444443 458887777777766655443 333443 34433 34577899977 788889999998754
Q ss_pred HHHHHHHHHHHHhh
Q 005373 399 MNKLVAELEAFLSS 412 (699)
Q Consensus 399 ldkL~~eLE~FL~s 412 (699)
. -.++|.|..-
T Consensus 1161 ~---~reqE~f~~m 1171 (1187)
T KOG0579|consen 1161 E---LREQEVFYGM 1171 (1187)
T ss_pred H---HHHHHHHhcc
Confidence 3 4588999864
No 72
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=87.79 E-value=87 Score=39.50 Aligned_cols=12 Identities=25% Similarity=0.324 Sum_probs=6.5
Q ss_pred HHHHhhcC--CCCC
Q 005373 588 IARLWRSG--PNNG 599 (699)
Q Consensus 588 iskLwrS~--~~n~ 599 (699)
..++-.|. |.|-
T Consensus 608 a~~~m~s~~~p~n~ 621 (1074)
T KOG0250|consen 608 AREFMQSDKPPANV 621 (1074)
T ss_pred HHHHHhcCCCCccc
Confidence 33666666 4443
No 73
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=87.34 E-value=22 Score=35.09 Aligned_cols=94 Identities=21% Similarity=0.376 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHH
Q 005373 223 SMVAALEAEVEQAR-TRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEI-SRERKNRQRIEIVN 300 (699)
Q Consensus 223 Slv~aLk~EL~~Ar-~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~EL-e~ERk~Rkr~E~ln 300 (699)
+.++.|+.|+...+ .++.+|..+....+.+++.|-.+|.+|-.--+ .-++--+..-|.++ +..+....++..+|
T Consensus 58 a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~----a~~klD~n~eK~~~r~e~~~~~~ki~e~~ 133 (177)
T PF07798_consen 58 AAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINKLR----AEVKLDLNLEKGRIREEQAKQELKIQELN 133 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 55777888887654 67778888888888888888887777633111 11111222222233 12245566788999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005373 301 SKLVNELADAKVSAKRYMQD 320 (699)
Q Consensus 301 ~KL~~ELae~Kss~~~a~ke 320 (699)
.|+..|++.+++.+..+.-+
T Consensus 134 ~ki~~ei~~lr~~iE~~K~~ 153 (177)
T PF07798_consen 134 NKIDTEIANLRTEIESLKWD 153 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999988777665433
No 74
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=87.23 E-value=51 Score=43.49 Aligned_cols=21 Identities=29% Similarity=0.735 Sum_probs=13.7
Q ss_pred HHhhHHHHHHhhhhHHHHHHH
Q 005373 257 LRKVSEEKAAWRSREHEKIRA 277 (699)
Q Consensus 257 ~KqlaEEK~awKskE~eki~a 277 (699)
++.+.+|---||.+-++-+..
T Consensus 1280 l~~l~~e~~~wK~R~q~L~~k 1300 (1822)
T KOG4674|consen 1280 LKKLEEENDRWKQRNQDLLEK 1300 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777776665444
No 75
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=87.09 E-value=29 Score=33.17 Aligned_cols=40 Identities=23% Similarity=0.401 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHH
Q 005373 223 SMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSE 262 (699)
Q Consensus 223 Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaE 262 (699)
|.|+.|..|+...+.++..|.+++.....+|=.|++...+
T Consensus 23 s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~ 62 (120)
T PF12325_consen 23 SQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEE 62 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688899999999999999999999999999888875543
No 76
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=86.62 E-value=99 Score=38.92 Aligned_cols=91 Identities=22% Similarity=0.321 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHH------HHHHHHHHHHHHHhhhhHHHHH
Q 005373 227 ALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAF------IDDLKAEISRERKNRQRIEIVN 300 (699)
Q Consensus 227 aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~------i~slk~ELe~ERk~Rkr~E~ln 300 (699)
-+..+|+.++..+..|..+. ++|++.++.+-+||..-+.++.+.++.- |.++.++++.+++-|......+
T Consensus 255 ~~~~~~~~~~d~~~~~~~~i----~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l 330 (1200)
T KOG0964|consen 255 QYIDALDKVEDESEDLKCEI----KELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVL 330 (1200)
T ss_pred hHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHH
Confidence 45567778888888877754 4677777788888887777766555544 7899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005373 301 SKLVNELADAKVSAKRYMQDY 321 (699)
Q Consensus 301 ~KL~~ELae~Kss~~~a~kel 321 (699)
.++..++.+-+--+++....|
T Consensus 331 ~~~~~ki~e~~~EL~~I~Pky 351 (1200)
T KOG0964|consen 331 QKVKDKIEEKKDELSKIEPKY 351 (1200)
T ss_pred HHHHHHHHHHHHHHHHhhhHH
Confidence 999888777777666655444
No 77
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=86.47 E-value=31 Score=41.44 Aligned_cols=90 Identities=23% Similarity=0.334 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHH--------HHHHhhhhH
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEIS--------RERKNRQRI 296 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe--------~ERk~Rkr~ 296 (699)
|..|+.+.++=...+.+|..++...+...+.|-.+ ...=...|+.+..-++.|..-+. .||+.++.+
T Consensus 567 v~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR-----~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL 641 (717)
T PF10168_consen 567 VKLLKQQKEQQLKELQELQEERKSLRESAEKLAER-----YEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKEL 641 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 44555555555555555555554444443333333 32223334444444444433332 378888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 297 EIVNSKLVNELADAKVSAKRYMQDYEK 323 (699)
Q Consensus 297 E~ln~KL~~ELae~Kss~~~a~kelE~ 323 (699)
+.++.+| -.++.++.++.+.+++
T Consensus 642 ~~~~~~l----~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 642 ERMKDQL----QDLKASIEQLKKKLDY 664 (717)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHH
Confidence 7777765 3345555555444443
No 78
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=86.37 E-value=61 Score=36.22 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 005373 224 MVAALEAEVEQARTRIQELETERRS 248 (699)
Q Consensus 224 lv~aLk~EL~~Ar~rI~eL~~E~~s 248 (699)
-+..|+..|..+++++..|.++...
T Consensus 98 ~~~~~~~~~~~~~~~~~rL~a~~~~ 122 (457)
T TIGR01000 98 QKQLLEQQLDNLKDQKKSLDTLKQS 122 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666677777777777666643
No 79
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=86.34 E-value=34 Score=34.84 Aligned_cols=97 Identities=19% Similarity=0.299 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHHhHHHhhhhhhhhhhhhhHHHhHHHHHHHHHHHH
Q 005373 329 ELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEA 408 (699)
Q Consensus 329 ellE~vCdELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~eLE~ 408 (699)
..++.=|..|-..|...+.+++..+.+..+.++.++.-+..|. +-.=..+..+..+.+.+..+.+....+..+...|.
T Consensus 66 ~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~- 143 (302)
T PF10186_consen 66 EELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS-ASQDLVESRQEQLEELQNELEERKQRLSQLQSQLA- 143 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3334444444455555555555555555555556666666665 22112223333444444444443333333333322
Q ss_pred HHhhcCCCCChhhHHHHHHHHHHHhhcccccc
Q 005373 409 FLSSRSINPDIQEMKEAEMLRQAAASVNIQEI 440 (699)
Q Consensus 409 FL~sk~~~~d~~~~r~ae~~rqs~eSv~~~~i 440 (699)
.+-..++++...=.+|..+
T Consensus 144 -------------~~r~~l~~~l~~ifpI~~~ 162 (302)
T PF10186_consen 144 -------------RRRRQLIQELSEIFPIEQV 162 (302)
T ss_pred -------------HHHHHHHHHHHHHhCceee
Confidence 2344556666665677653
No 80
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=86.10 E-value=1.1e+02 Score=38.78 Aligned_cols=49 Identities=20% Similarity=0.320 Sum_probs=25.8
Q ss_pred HHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 005373 203 AEVRQIYSHMKHLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLE 254 (699)
Q Consensus 203 ~ellkvlnri~leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie 254 (699)
.+.+++|=.-=+++|-..+.+.+.+ =|++|++.|.+++.+....++++.
T Consensus 197 ~dkYklfmkaT~L~qi~~~~~~~~~---~~~~~~~~i~~~~e~i~~l~k~i~ 245 (1074)
T KOG0250|consen 197 KDKYKLFMKATQLEQITESYSEIME---SLDHAKELIDLKEEEIKNLKKKIK 245 (1074)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4445544222255554444444433 377888888877765444444333
No 81
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=85.97 E-value=78 Score=37.12 Aligned_cols=64 Identities=17% Similarity=0.099 Sum_probs=29.8
Q ss_pred hhHHHHhhcCCCCCCCceeeeccCCCCcccccCccccC-CccccccCCCCCCCCCCCCCCCCCC--CCCCCcccc
Q 005373 586 SSIARLWRSGPNNGDNYKIITVDGTKGRLSVSNGRLSN-GSLASLDRGSGNGGLSPSDLGQWSS--PDSGNPHVT 657 (699)
Q Consensus 586 ssiskLwrS~~~n~~~~k~~~~e~~ngRl~~sn~r~sn-~~~~sp~~~s~e~g~s~~~~~qwSS--Pds~Nphv~ 657 (699)
+-+..|++.+ |..+-++ .|..=|+| -..+..+ ...+-|....+=.-|++ -.+|.. .+.+.|+|.
T Consensus 563 a~~~al~~~~---~~~~p~i-iD~p~~~l--D~~~r~~l~~~~~~~~~~QvIils~--d~e~~~~~~~~l~~~i~ 629 (650)
T TIGR03185 563 ALLWGLAKVS---GRRLPVI-IDTPLGRL--DSSHRENLVVNYFPKASHQVLLLST--DEEVDEKHYNLLKPNIS 629 (650)
T ss_pred HHHHHHHHhc---CCCCCEE-EcCCcccc--ChHHHHHHHHHHhhccCCeEEEEec--hHhhCHHHHHHHHHHhh
Confidence 4444566654 2235554 56667777 4333333 22245654444445554 234432 334445544
No 82
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=85.92 E-value=26 Score=41.56 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=14.3
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHh
Q 005373 389 KVAVEQKYSQMNKLVAELEAFLS 411 (699)
Q Consensus 389 k~~leeK~s~ldkL~~eLE~FL~ 411 (699)
+..|++|...++.|..+|+.-.+
T Consensus 487 ~~~L~e~~~~ve~L~~~l~~l~k 509 (652)
T COG2433 487 EKELEEKKKRVEELERKLAELRK 509 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456667777777777665553
No 83
>PRK04863 mukB cell division protein MukB; Provisional
Probab=85.39 E-value=1.3e+02 Score=39.26 Aligned_cols=13 Identities=23% Similarity=0.363 Sum_probs=6.3
Q ss_pred cccccc-ccccccc
Q 005373 571 ISEVCS-VPTKSLK 583 (699)
Q Consensus 571 is~vcs-~~~~~~k 583 (699)
+++++. |+.+..+
T Consensus 687 vsel~~~v~~~~~~ 700 (1486)
T PRK04863 687 LSEIYDDVSLEDAP 700 (1486)
T ss_pred hhHhhhccCcchHH
Confidence 455555 4444433
No 84
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=85.38 E-value=75 Score=36.35 Aligned_cols=36 Identities=14% Similarity=0.071 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhH
Q 005373 322 EKERKERELIEEVCDELAKEIGEDKAEVEALKRESM 357 (699)
Q Consensus 322 E~ERKaRellE~vCdELAkeI~edkaEVe~LKres~ 357 (699)
.+.-+.-.++-.|-.+++..|+.+++....|+..-.
T Consensus 143 ~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~ 178 (420)
T COG4942 143 QRSVRLAIYYGALNPARAERIDALKATLKQLAAVRA 178 (420)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666677777777777777777666655433
No 85
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=85.03 E-value=46 Score=33.67 Aligned_cols=93 Identities=29% Similarity=0.414 Sum_probs=69.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhh----------------HHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHH
Q 005373 221 AVSMVAALEAEVEQARTRIQELETERRSS----------------KKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKA 284 (699)
Q Consensus 221 ~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~----------------k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ 284 (699)
...||..|+..+.+-|.++.+|++--.+. -.+|+.++.+|.||.. ++.+-.-+.+. +++
T Consensus 14 qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqq--R~~~L~qvN~l---LRe 88 (182)
T PF15035_consen 14 QAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQ--RSEELAQVNAL---LRE 88 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHH--hHHHHHHHHHH---HHH
Confidence 34689999999999999999999866221 2578899999999987 66555555544 455
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 285 EISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKER 325 (699)
Q Consensus 285 ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ER 325 (699)
.||..+ ..|..|..||..+...+..+..+|+...
T Consensus 89 QLEq~~-------~~N~~L~~dl~klt~~~~~l~~eL~~ke 122 (182)
T PF15035_consen 89 QLEQAR-------KANEALQEDLQKLTQDWERLRDELEQKE 122 (182)
T ss_pred HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677555 4688888888877777777777776544
No 86
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=84.60 E-value=79 Score=38.34 Aligned_cols=111 Identities=28% Similarity=0.387 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hccHHHHHHHHHhhHHHHhhhhhhHHHHH
Q 005373 295 RIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEI---GEDKAEVEALKRESMKLREEVDDERKMLQ 371 (699)
Q Consensus 295 r~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI---~edkaEVe~LKres~k~reE~EeER~MLq 371 (699)
.+|.--.+|-.||.|.|..=.+.++||-. ||+--=-|=|.| +.-.-|.|.||++..++.||++.=+.=|.
T Consensus 73 ~~e~~~~~lr~e~ke~K~rE~rll~dyse-------lEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qle 145 (717)
T PF09730_consen 73 DLELERKRLREEIKEYKFREARLLQDYSE-------LEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLE 145 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555567888999999888888888743 222222344444 44556888888888877666633222222
Q ss_pred HHHHhHHHhhhhhhhhhhhhhHHHhHHHHHHHHHHHHHHhhc
Q 005373 372 MAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSSR 413 (699)
Q Consensus 372 mAEvWREERVQMKL~dAk~~leeK~s~ldkL~~eLE~FL~sk 413 (699)
-|..+++ =-+-+|.||=.+|..=-.+=.-|+-||..|+..-
T Consensus 146 e~~rLk~-iae~qleEALesl~~EReqk~~LrkEL~~~~~~~ 186 (717)
T PF09730_consen 146 EAARLKE-IAEKQLEEALESLKSEREQKNALRKELDQHLNIE 186 (717)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 2222221 0112556666666555555566888888888764
No 87
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=84.32 E-value=55 Score=33.95 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 302 KLVNELADAKVSAKRYMQDYEKERKE 327 (699)
Q Consensus 302 KL~~ELae~Kss~~~a~kelE~ERKa 327 (699)
-+..+|..+..||+...+-||+=|..
T Consensus 80 q~~~dL~s~E~sfsdl~~ryek~K~v 105 (207)
T PF05010_consen 80 QAYADLNSLEKSFSDLHKRYEKQKEV 105 (207)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 37888999999999999999876544
No 88
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=84.10 E-value=30 Score=31.30 Aligned_cols=68 Identities=22% Similarity=0.280 Sum_probs=49.6
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 252 KLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKE 324 (699)
Q Consensus 252 eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~E 324 (699)
-++..+-++.-| ++|+..+..++-.+ ++-|..|.+.=+..-.=|..+..+|.++...|...++++|+|
T Consensus 28 ~lE~k~~rl~~E----k~kadqkyfa~mr~-~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E~~~~~~l~~~Eke 95 (96)
T PF08647_consen 28 ILEQKKLRLEAE----KAKADQKYFAAMRS-KDALDNEMKKLNTQLSKSSELIEQLKETEKEFVRKLKNLEKE 95 (96)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344445555555 44566666666665 566888866666667778889999999999999999999986
No 89
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=83.67 E-value=61 Score=33.92 Aligned_cols=73 Identities=19% Similarity=0.272 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLV 304 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~ 304 (699)
|.-++.+|..|+..+-+++..++....+++.+.. ....|. .+.+.=+..-|-.|+
T Consensus 33 ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~----~~~k~e---------------------~~A~~Al~~g~E~LA 87 (225)
T COG1842 33 IRDMESELAKARQALAQAIARQKQLERKLEEAQA----RAEKLE---------------------EKAELALQAGNEDLA 87 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH---------------------HHHHHHHHCCCHHHH
Confidence 6677788888888888888877777776554433 333333 333333444457788
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005373 305 NELADAKVSAKRYMQDYE 322 (699)
Q Consensus 305 ~ELae~Kss~~~a~kelE 322 (699)
+++.+.+..+.+.++-++
T Consensus 88 r~al~~~~~le~~~~~~~ 105 (225)
T COG1842 88 REALEEKQSLEDLAKALE 105 (225)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888776655555544443
No 90
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=83.64 E-value=0.34 Score=58.19 Aligned_cols=142 Identities=22% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHHhhhhcc-cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHH-HHHhhh--hHHHHHHHHH
Q 005373 204 EVRQIYSHMK-HLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEE-KAAWRS--REHEKIRAFI 279 (699)
Q Consensus 204 ellkvlnri~-leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEE-K~awKs--kE~eki~a~i 279 (699)
+|--..+..- ++|...-.+.-+..|..||..-|.++..|+..+......|..|--+|.+= -.+.+. +.--++.+-|
T Consensus 673 eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri 752 (859)
T PF01576_consen 673 ELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALKGGKKQIAKLEARI 752 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHhHHH
Confidence 3334444444 55666667888999999999999999999999999999999998888773 334443 5666788889
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHH
Q 005373 280 DDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEAL 352 (699)
Q Consensus 280 ~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~L 352 (699)
+.|-.+|+.|.+-+..+...++|+-+-|.|+ .-.+|.+||.-.-+-+++|.|-..|..||..+++.
T Consensus 753 ~eLE~~Le~E~r~~~~~~k~~rk~er~~kEl-------~~q~ee~~k~~~~~~d~~~kl~~k~k~~krq~eea 818 (859)
T PF01576_consen 753 RELEEELESEQRRRAEAQKQLRKLERRVKEL-------QFQVEEERKNAERLQDLVDKLQLKLKQLKRQLEEA 818 (859)
T ss_dssp -------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 9999999999999999999999997776654 35578899999999999999999999998888775
No 91
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=82.78 E-value=77 Score=34.47 Aligned_cols=111 Identities=21% Similarity=0.278 Sum_probs=66.4
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 005373 214 HLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNR 293 (699)
Q Consensus 214 leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~R 293 (699)
|.|-|.++--+-+-|.++|+++..|.+.|+.+.+..+.+++.+-.++..-.... -..+..|.++|..=+..
T Consensus 36 l~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~--------y~q~s~Leddlsqt~ai- 106 (333)
T KOG1853|consen 36 LNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQF--------YQQESQLEDDLSQTHAI- 106 (333)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH-
Confidence 455566666677889999999999999999999999988887766554433311 11222333344332221
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhh
Q 005373 294 QRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERE-LIEEVCDELAKEIG 343 (699)
Q Consensus 294 kr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRe-llE~vCdELAkeI~ 343 (699)
-|.+ +|-.+||. ++-.+||+-+++.+ .+|++-..|-..|.
T Consensus 107 --keql-~kyiReLE-------QaNDdLErakRati~sleDfeqrLnqAIE 147 (333)
T KOG1853|consen 107 --KEQL-RKYIRELE-------QANDDLERAKRATIYSLEDFEQRLNQAIE 147 (333)
T ss_pred --HHHH-HHHHHHHH-------HhccHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 2222 33445553 33455666555554 45666666655553
No 92
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=82.57 E-value=19 Score=41.58 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=10.9
Q ss_pred HHHHHHHhhcCC-CCChhhH
Q 005373 404 AELEAFLSSRSI-NPDIQEM 422 (699)
Q Consensus 404 ~eLE~FL~sk~~-~~d~~~~ 422 (699)
.=||++|..... ..|...+
T Consensus 275 ~~iet~L~~~~~~i~D~~L~ 294 (508)
T PF00901_consen 275 GTIETILTADTPEIPDKSLA 294 (508)
T ss_pred HHHHHHHhcCCCCCChHHHH
Confidence 357888888643 3444433
No 93
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=82.31 E-value=82 Score=36.09 Aligned_cols=45 Identities=22% Similarity=0.336 Sum_probs=29.2
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHhhHHHH
Q 005373 214 HLDQQVSAVSMVAALEAEVEQARTRIQELETER---RSSKKKLEHFLRKVSEEK 264 (699)
Q Consensus 214 leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~---~s~k~eie~l~KqlaEEK 264 (699)
|-|.-++++|.|-|+|. ++-.|+++|- ++-...++-|.||.-+|-
T Consensus 376 LAEETAATiSAIEAMKn------AhrEEmeRELeKsqSvnsdveaLRrQyleel 423 (593)
T KOG4807|consen 376 LAEETAATISAIEAMKN------AHREEMERELEKSQSVNSDVEALRRQYLEEL 423 (593)
T ss_pred hhhhhhhhhHHHHHHHH------HHHHHHHHHHHhhhccccChHHHHHHHHHHH
Confidence 55777889999998874 2333333332 355567788888877763
No 94
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.03 E-value=1.4e+02 Score=36.95 Aligned_cols=64 Identities=30% Similarity=0.384 Sum_probs=42.4
Q ss_pred hhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhH
Q 005373 294 QRIEIVNSKL---VNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESM 357 (699)
Q Consensus 294 kr~E~ln~KL---~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~ 357 (699)
.++|.||-|| ---|.+++.-+-++..++|.=++.|+++-.--++|-..|.|+.+.+-.|-.|..
T Consensus 444 ~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq 510 (1118)
T KOG1029|consen 444 QELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQ 510 (1118)
T ss_pred HHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3456666654 234556666666777777777777777777777777777777776666655444
No 95
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=81.83 E-value=0.44 Score=57.23 Aligned_cols=127 Identities=25% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRS--REHEKIRAFIDDLKAEISRERKNRQRIEIVNSK 302 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKs--kE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~K 302 (699)
|.-|..+|+.+++.+.+|++-++..-+.+..+..++.+....+-. ++.....+-|..|+.+|+.-.-..-.++.-|+.
T Consensus 358 leDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~ 437 (859)
T PF01576_consen 358 LEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQ 437 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 344556666666666666666655555555555554444332221 233344555677777777777777777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHH
Q 005373 303 LVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEA 351 (699)
Q Consensus 303 L~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~ 351 (699)
|..||.++...+..+-+.+-.=.|++..||.-.+||-..+.+.++.++.
T Consensus 438 L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~ 486 (859)
T PF01576_consen 438 LQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEA 486 (859)
T ss_dssp -------------------------------------------------
T ss_pred HHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887776655543333222333334444444444444444444333
No 96
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=81.58 E-value=69 Score=33.09 Aligned_cols=175 Identities=22% Similarity=0.301 Sum_probs=84.9
Q ss_pred HHHHHHHHhhHHHHHHhhhhHHHHHHH---HHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 251 KKLEHFLRKVSEEKAAWRSREHEKIRA---FIDDLKAEISRERKNRQRI-EIVNSKLVNELADAKVSAKRYMQDYEKERK 326 (699)
Q Consensus 251 ~eie~l~KqlaEEK~awKskE~eki~a---~i~slk~ELe~ERk~Rkr~-E~ln~KL~~ELae~Kss~~~a~kelE~ERK 326 (699)
..+..|.+.|..|+..++..|..++.. .|..|...|+.|-|-|-.+ +.+.+.+-..+..+...+.+-+.+..
T Consensus 12 e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~~~---- 87 (247)
T PF06705_consen 12 ERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQISEKQ---- 87 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 356777888888888888888877654 4677777777776666432 23444444444443333332222211
Q ss_pred HHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhh--hhhHHHHHHHHHhHHHhh--------------------hhh
Q 005373 327 ERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEV--DDERKMLQMAEVWREERV--------------------QMK 384 (699)
Q Consensus 327 aRellE~vCdELAkeI~edkaEVe~LKres~k~reE~--EeER~MLqmAEvWREERV--------------------QMK 384 (699)
.-+...+|-|+..|......|...+.+.....++. .-.+.|-.+.+..-.||. +.+
T Consensus 88 --~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l~~~ 165 (247)
T PF06705_consen 88 --EQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKRLEEEENRLQEK 165 (247)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223333333333333333333333222222222 223334444444433333 333
Q ss_pred hhhhhhhhHHHhHHHHHHHHHHHHHHhhcCCCC---ChhhHHHHHHHHHHHhh
Q 005373 385 LVDAKVAVEQKYSQMNKLVAELEAFLSSRSINP---DIQEMKEAEMLRQAAAS 434 (699)
Q Consensus 385 L~dAk~~leeK~s~ldkL~~eLE~FL~sk~~~~---d~~~~r~ae~~rqs~eS 434 (699)
+..-+..-+ ..+..|..+|+.+++.+.... ....+.+-..|+.+|..
T Consensus 166 i~~Ek~~Re---~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~ 215 (247)
T PF06705_consen 166 IEKEKNTRE---SKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALAL 215 (247)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333333222 456667888888888753221 23445555555555543
No 97
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=81.33 E-value=58 Score=32.03 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRK 259 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~Kq 259 (699)
++.-+.+-+.-..||--|+++-.....+..++.+.
T Consensus 12 LK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~d 46 (140)
T PF10473_consen 12 LKESESEKDSLEDHVESLERELEMSQENKECLILD 46 (140)
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45555555555666666666666666666666553
No 98
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.32 E-value=34 Score=39.15 Aligned_cols=128 Identities=20% Similarity=0.263 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 005373 225 VAALEAEVEQARTRIQELETERR----SSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVN 300 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~----s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln 300 (699)
+.-|+++|+-|++.+.-..+=-- +....|+-..++-.||-++-+.-..+-+...=-.+-.-|+.||..-+. --
T Consensus 40 l~~lrtql~~a~aeme~ikaia~vsE~tk~EaV~av~rq~~eeVaSlqa~~k~~~~~ye~q~~~~leqertq~qq---~~ 116 (542)
T KOG0993|consen 40 LGHLRTQLWEAQAEMENIKAIATVSEPTKSEAVSAVVRQEEEEVASLQASQKSPNPTYECQMCQNLEQERTQLQQ---NE 116 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhccccchhHHHhcCCCccHHHHHHHHHHHHHHHHHH---HH
Confidence 56788888888887655443221 112356777777777777766665555555555555668888765544 34
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHH
Q 005373 301 SKLVNELADAKVSAKR--YMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMK 358 (699)
Q Consensus 301 ~KL~~ELae~Kss~~~--a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k 358 (699)
.++-+|+..++--++. +.-+||+|++-+.=.++--.||.. -.+.||.+||.+..+
T Consensus 117 e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~---pmekeI~elk~kl~~ 173 (542)
T KOG0993|consen 117 EKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVT---PMEKEINELKKKLAK 173 (542)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHh---hHHHHHHHHHHHHHh
Confidence 6888999999988888 889999998766544444444443 345566666654443
No 99
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=80.92 E-value=1.4e+02 Score=36.37 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHhh
Q 005373 279 IDDLKAEISRERKNR 293 (699)
Q Consensus 279 i~slk~ELe~ERk~R 293 (699)
++.++..++.-+..+
T Consensus 568 ~~~l~~~~~~~~~~~ 582 (908)
T COG0419 568 LQELKELLEELRLLR 582 (908)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444433333
No 100
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=80.85 E-value=1.7e+02 Score=37.11 Aligned_cols=209 Identities=22% Similarity=0.266 Sum_probs=104.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHH--HHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 005373 222 VSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREH--EKIRAFIDDLKAEISRERKNRQRIEIV 299 (699)
Q Consensus 222 ~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~--eki~a~i~slk~ELe~ERk~Rkr~E~l 299 (699)
+++..-+..|+..++++|+.|-.--.....++..|.-.+.++|...+.... ++...-++.|... --.+|.-
T Consensus 473 ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~-------l~~lE~E 545 (1195)
T KOG4643|consen 473 LSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEEL-------LGNLEEE 545 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhHHHH
Confidence 344455555555666666666555555555566665555555544332211 1111111111111 1123333
Q ss_pred HHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhccHHHHHHHHHh--
Q 005373 300 NSKLVNELADAKV--------------------SAKRYMQDYEKERKERELIEEV--CDELAKEIGEDKAEVEALKRE-- 355 (699)
Q Consensus 300 n~KL~~ELae~Ks--------------------s~~~a~kelE~ERKaRellE~v--CdELAkeI~edkaEVe~LKre-- 355 (699)
|.-|-+++.-.+. -+++++.-|+..|+-++.||.- --+++-.=-.++.-|+.|+..
T Consensus 546 Na~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~idaL~alrrhke~LE~e~mnQql~~d~~~~kr~ie~Lr~~~~ 625 (1195)
T KOG4643|consen 546 NAHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKYIDALNALRRHKEKLEEEIMNQQLFEDPIPLKRDIEWLRRKES 625 (1195)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCchhhhHHHHHHHHH
Confidence 3333333333332 3466777777888888887765 344544444666667777665
Q ss_pred ---hH---HHHhhh---hhhHHHHHHHHHhHHHhhhhhhhhhhhhhHHHhHHHHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 005373 356 ---SM---KLREEV---DDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSSRSINPDIQEMKEAE 426 (699)
Q Consensus 356 ---s~---k~reE~---EeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~eLE~FL~sk~~~~d~~~~r~ae 426 (699)
.. ..|+|. ..+. | --|=+|-||..-.+.|.-++.++.-+...+..==.+-+... .--..-
T Consensus 626 kll~~Kkdr~ree~kel~~ek--l------~ve~l~e~l~~lp~~fkt~n~e~l~V~sn~lEe~qr~~~~~---sn~~~~ 694 (1195)
T KOG4643|consen 626 KLLKEKKDRNREETKELMDEK--L------QVEDLQEKLRELPLEFKTKNDEILMVGSNILEERQRLGGCK---SNAEID 694 (1195)
T ss_pred hhcchhHHHHHHHHhhccccc--h------hHHHHHHHHHhCchhhccccchhhhhhhhhhhhhhhhcccc---ccchHH
Confidence 11 112221 1111 1 11335667777777777777777766666544111111111 111122
Q ss_pred HHHHHHhhcccccccccccCCC
Q 005373 427 MLRQAAASVNIQEIKEFTYEPP 448 (699)
Q Consensus 427 ~~rqs~eSv~~~~ike~ty~p~ 448 (699)
+.++++.++.+++-.+.|=+|.
T Consensus 695 l~q~~i~~~q~~~ele~teapt 716 (1195)
T KOG4643|consen 695 LLQVSIRNSQIQGELENTEAPT 716 (1195)
T ss_pred HHHHHHhcccccchhhcCCCcc
Confidence 4566788888887677766665
No 101
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=80.79 E-value=59 Score=31.78 Aligned_cols=15 Identities=20% Similarity=0.499 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 005373 230 AEVEQARTRIQELET 244 (699)
Q Consensus 230 ~EL~~Ar~rI~eL~~ 244 (699)
.|+..++.++.+|.+
T Consensus 81 ~e~~~~~~~l~~l~~ 95 (191)
T PF04156_consen 81 GELSELQQQLQQLQE 95 (191)
T ss_pred hhHHhHHHHHHHHHH
Confidence 344444444444444
No 102
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=80.73 E-value=96 Score=34.18 Aligned_cols=162 Identities=19% Similarity=0.293 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHhhhHHHHHHHHHh--hHHHH----HHhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 005373 225 VAALEAEVEQARTRIQE----LETERRSSKKKLEHFLRK--VSEEK----AAWRSREHEKIRAFIDDLKAEISRERKNRQ 294 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~e----L~~E~~s~k~eie~l~Kq--laEEK----~awKskE~eki~a~i~slk~ELe~ERk~Rk 294 (699)
|.-|+.||+.-+.+-++ ...+-...+.+.+.|-|- |.||. ..+-+.+..-+.|----|..+|+.|+..+.
T Consensus 8 ia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~ke 87 (305)
T PF14915_consen 8 IAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKE 87 (305)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHH
Confidence 67788888877665544 334445555555666553 34453 334445555555555667789999999998
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH-------HHHhhhccHHHHHHHHHhhHHHHhhh
Q 005373 295 RIEIVNSKLVNELADAKVSAKRYMQDYEKERKERE----LIEEVCDE-------LAKEIGEDKAEVEALKRESMKLREEV 363 (699)
Q Consensus 295 r~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRe----llE~vCdE-------LAkeI~edkaEVe~LKres~k~reE~ 363 (699)
|+|. |+.-..+-+..|++|++.=-.++. .+....|| +--.|...+...+-|-+...++.-..
T Consensus 88 rLEt-------EiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~ 160 (305)
T PF14915_consen 88 RLET-------EIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKF 160 (305)
T ss_pred HHHH-------HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHH
Confidence 7653 333334444455555554333322 22233333 33345555555566665555543222
Q ss_pred -hhhHHHHHHHHHhHH-----HhhhhhhhhhhhhhH
Q 005373 364 -DDERKMLQMAEVWRE-----ERVQMKLVDAKVAVE 393 (699)
Q Consensus 364 -EeER~MLqmAEvWRE-----ERVQMKL~dAk~~le 393 (699)
--+-++-+..+.+|| |.||.-|..|...+-
T Consensus 161 nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~K 196 (305)
T PF14915_consen 161 NSLEIELHHTRDALREKTLALESVQRDLSQTQCQIK 196 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223334444555554 566666666666443
No 103
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=80.73 E-value=81 Score=33.36 Aligned_cols=43 Identities=21% Similarity=0.334 Sum_probs=22.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 005373 292 NRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKE-RELIEEVCDEL 338 (699)
Q Consensus 292 ~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKa-RellE~vCdEL 338 (699)
.++.+|.++.|+.+ ++.....+|+.|+..+.. -+-|..+|+.|
T Consensus 155 t~k~leK~~~k~~k----a~~~Y~~~v~~l~~~~~~~~~~m~~~~~~~ 198 (269)
T cd07673 155 TQREIEKAAVKSKK----ATESYKLYVEKYALAKADFEQKMTETAQKF 198 (269)
T ss_pred CHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777766655 344455555555544331 12344555544
No 104
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=80.63 E-value=71 Score=32.61 Aligned_cols=110 Identities=16% Similarity=0.289 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHH
Q 005373 272 HEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELA-DAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVE 350 (699)
Q Consensus 272 ~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELa-e~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe 350 (699)
..-+..+++.|..|.+. +-..|..|+..|. ++..-+..+.++++++||. ++.--..+.+....-...|+
T Consensus 55 ~gsl~~a~~~i~~e~e~-------~a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~---~~~~~~k~~k~~~~~~~~l~ 124 (236)
T cd07651 55 EGGLKNSLDTLRLETES-------MAKSHLKFAKQIRQDLEEKLAAFASSYTQKRKK---IQSHMEKLLKKKQDQEKYLE 124 (236)
T ss_pred cchHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 34577777888777764 3445667777776 5667777788888776663 33333444445555566777
Q ss_pred HHHHhhHHHHhhhhhhHHHHHHHHHh--HHHhhhhhhhhhhhhhH
Q 005373 351 ALKRESMKLREEVDDERKMLQMAEVW--REERVQMKLVDAKVAVE 393 (699)
Q Consensus 351 ~LKres~k~reE~EeER~MLqmAEvW--REERVQMKL~dAk~~le 393 (699)
..|..-.+.+.+++.=+.=.++ +| --|.+|-||..|...+.
T Consensus 125 KaK~~Y~~~c~~~e~~~~~~~~--~~~ke~eK~~~k~~k~~~~~~ 167 (236)
T cd07651 125 KAREKYEADCSKINSYTLQSQL--TWGKELEKNNAKLNKAQSSIN 167 (236)
T ss_pred HHHHHHHHHHHhHHHHHHHHcc--cCcchHHHHHHHHHHHHHHHH
Confidence 7888877777776543321112 12 12556666655554433
No 105
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=80.56 E-value=53 Score=31.09 Aligned_cols=70 Identities=14% Similarity=0.249 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh--HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKV--SEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQ 294 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~Kql--aEEK~awKskE~eki~a~i~slk~ELe~ERk~Rk 294 (699)
+..|+.|+..+...+..+.......+.+++...+.. +.++...----|-..-..|..++.++..-+....
T Consensus 5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~ 76 (132)
T PF07926_consen 5 LSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEIN 76 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888877777777777766655433 2222222222333334445666666655444333
No 106
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=80.09 E-value=49 Score=34.29 Aligned_cols=10 Identities=30% Similarity=0.385 Sum_probs=5.5
Q ss_pred hHHHHHHHHH
Q 005373 223 SMVAALEAEV 232 (699)
Q Consensus 223 Slv~aLk~EL 232 (699)
.+...|..|+
T Consensus 80 ~la~~L~~ev 89 (239)
T cd07658 80 NLGSALTEEA 89 (239)
T ss_pred HHHHHHHHHH
Confidence 4455565555
No 107
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=80.03 E-value=1.2e+02 Score=35.10 Aligned_cols=47 Identities=11% Similarity=0.299 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-----HHhhhHHHHHHHHHhhHHHHHHhhh
Q 005373 223 SMVAALEAEVEQARTRIQELET-----ERRSSKKKLEHFLRKVSEEKAAWRS 269 (699)
Q Consensus 223 Slv~aLk~EL~~Ar~rI~eL~~-----E~~s~k~eie~l~KqlaEEK~awKs 269 (699)
+-|..|+.+|..+...|..|.= .-......||.|-..|.-|..|.+.
T Consensus 256 ~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~ 307 (569)
T PRK04778 256 KEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKY 307 (569)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577777777776666555543 3355566788888888888776654
No 108
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=79.09 E-value=1.8e+02 Score=36.35 Aligned_cols=40 Identities=20% Similarity=0.334 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 279 IDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYM 318 (699)
Q Consensus 279 i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~ 318 (699)
..++...|+-++..--.++..|.-|..-|.+++.+...+.
T Consensus 447 ~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~ 486 (980)
T KOG0980|consen 447 YDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAE 486 (980)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666666665554444443
No 109
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=78.53 E-value=1.4e+02 Score=34.63 Aligned_cols=36 Identities=14% Similarity=0.263 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHH
Q 005373 227 ALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSE 262 (699)
Q Consensus 227 aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaE 262 (699)
.+..++..++.+++++..++....++++.+.-++.|
T Consensus 165 ~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~E 200 (563)
T TIGR00634 165 ELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEE 200 (563)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555554443
No 110
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=78.29 E-value=36 Score=41.11 Aligned_cols=15 Identities=20% Similarity=0.211 Sum_probs=9.8
Q ss_pred hhhHHHHHhhhcccc
Q 005373 99 VVSARTLAAGLWRLQ 113 (699)
Q Consensus 99 ~vSaRkLAA~LWel~ 113 (699)
++.-|.+|-..|=.|
T Consensus 341 Tt~lktigl~~~maq 355 (782)
T PRK00409 341 TVTLKTLGLAALMAK 355 (782)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566777776666555
No 111
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=78.07 E-value=92 Score=33.63 Aligned_cols=120 Identities=18% Similarity=0.266 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHH
Q 005373 231 EVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERK-NRQRIEIVNSKLVNELAD 309 (699)
Q Consensus 231 EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk-~Rkr~E~ln~KL~~ELae 309 (699)
|.-.|-..++.++..+...-|.--+|.- ...=-.|+.+-.+-+...++.-.+.|..+.+ +.+..+.++ .+.-+|.+
T Consensus 108 EY~~a~~d~r~~m~~q~~~vK~~aRl~a--K~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~-~~~~~l~~ 184 (325)
T PF08317_consen 108 EYYTADPDMRLLMDNQFQLVKTYARLEA--KKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLD-ELLPKLRE 184 (325)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3444444455554444333322222211 1223468888888888888888887776554 555555555 55556655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHhhHHHHhhhhhhH
Q 005373 310 AKVSAKRYMQDYEKERKERELIEEVCDELAKEIG-EDKAEVEALKRESMKLREEVDDER 367 (699)
Q Consensus 310 ~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~-edkaEVe~LKres~k~reE~EeER 367 (699)
.+.++..-+..|..-.. +++ .|+.+++.+|.+......+++.-|
T Consensus 185 ~~~~L~~e~~~Lk~~~~--------------e~~~~D~~eL~~lr~eL~~~~~~i~~~k 229 (325)
T PF08317_consen 185 RKAELEEELENLKQLVE--------------EIESCDQEELEALRQELAEQKEEIEAKK 229 (325)
T ss_pred HHHHHHHHHHHHHHHHh--------------hhhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444443333322111 122 355666666666555555554333
No 112
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=77.66 E-value=1.2e+02 Score=33.49 Aligned_cols=186 Identities=19% Similarity=0.277 Sum_probs=89.8
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhH---HHHHHhhhhHHH---HHHHHHHHHHHHHH
Q 005373 214 HLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVS---EEKAAWRSREHE---KIRAFIDDLKAEIS 287 (699)
Q Consensus 214 leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~Kqla---EEK~awKskE~e---ki~a~i~slk~ELe 287 (699)
|+++...=.--+.+|..+|..+..+|.+|.+|-... +.|++-++ ||-..--+-.-. ........-..-|+
T Consensus 88 Ll~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~k----deLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le 163 (306)
T PF04849_consen 88 LLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMK----DELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLE 163 (306)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcCcHhhhcccccCCCccccccccccccccchhHH
Confidence 444444334446789999999999999998876432 33444444 322111110000 00000000001123
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------Hhhhc---cHHHHH
Q 005373 288 RERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELA--------------KEIGE---DKAEVE 350 (699)
Q Consensus 288 ~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELA--------------keI~e---dkaEVe 350 (699)
.=++-=|.+|.-|.+|-.|-+..+.....+ |.+.+.||.+.+.+|+ +...+ ...||.
T Consensus 164 ~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~------EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt 237 (306)
T PF04849_consen 164 ALQEKLKSLEEENEQLRSEASQLKTETDTY------EEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEIT 237 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhc------cHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333557777888877777766555533 4557777776555443 32221 223333
Q ss_pred HHHHhhHHHHhh-----hhhhHHHHHHHHHhHHHhhhhhhhhhhhhhHHHhHHHHHHHHHHHHHHhh
Q 005373 351 ALKRESMKLREE-----VDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSS 412 (699)
Q Consensus 351 ~LKres~k~reE-----~EeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~eLE~FL~s 412 (699)
.|..+.+.+... +|.|-.-.|++.. --.|+.|..==..|.+||+.+-.|=.|-+.=|+.
T Consensus 238 ~LlsqivdlQ~r~k~~~~EnEeL~q~L~~s---ke~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~ 301 (306)
T PF04849_consen 238 SLLSQIVDLQQRCKQLAAENEELQQHLQAS---KESQRQLQAELQELQDKYAECMAMLHEAQEELKT 301 (306)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333322222110 1222222222222 2345555444446778887777766666555544
No 113
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=77.57 E-value=25 Score=30.62 Aligned_cols=61 Identities=15% Similarity=0.278 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 005373 223 SMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISR 288 (699)
Q Consensus 223 Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ 288 (699)
+.|.+|+.-|++|-.+|.-...+.....++=|.++++|.+ ..-+-.++++-+..++.||+.
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~-----a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGD-----AYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999998888888888888888888776 344667777778887777654
No 114
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=77.57 E-value=33 Score=41.44 Aligned_cols=61 Identities=26% Similarity=0.372 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 005373 227 ALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEIS 287 (699)
Q Consensus 227 aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe 287 (699)
..+.++++.+..+.++.+|-...+.+++...++|.++|..+..+.++++..+|+.++.|++
T Consensus 522 ~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~ 582 (771)
T TIGR01069 522 ALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVE 582 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555566666666666666666666666666666666666555543
No 115
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=77.04 E-value=23 Score=41.89 Aligned_cols=14 Identities=57% Similarity=0.755 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHH
Q 005373 319 QDYEKERKERELIE 332 (699)
Q Consensus 319 kelE~ERKaRellE 332 (699)
|-||+||-.|+.||
T Consensus 663 QrLERErmErERLE 676 (940)
T KOG4661|consen 663 QRLERERMERERLE 676 (940)
T ss_pred HHHHHHHHHHHHHH
Confidence 45566666665554
No 116
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=77.00 E-value=1.7e+02 Score=34.88 Aligned_cols=63 Identities=19% Similarity=0.330 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHH-----HHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 005373 230 AEVEQARTRIQELETERRSSKKKLEHFLRKVSE-----EKAAWRSREHEKIRAFIDDLKAEISRERKN 292 (699)
Q Consensus 230 ~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaE-----EK~awKskE~eki~a~i~slk~ELe~ERk~ 292 (699)
-.|..-...|.+-+-|.+..+.+.+.|-+++.- +-.-.-+.|.+++...|..+.-+++..++.
T Consensus 294 ~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~ 361 (581)
T KOG0995|consen 294 KKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKE 361 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666666777777777666543 233345666777777777776666665544
No 117
>PRK01156 chromosome segregation protein; Provisional
Probab=76.97 E-value=1.8e+02 Score=35.20 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 005373 227 ALEAEVEQARTRIQELETERRSSKKKLEH 255 (699)
Q Consensus 227 aLk~EL~~Ar~rI~eL~~E~~s~k~eie~ 255 (699)
.++.+|......+.++..+......+++.
T Consensus 194 ~~e~eL~~~~~~i~el~~~~~~l~~~i~~ 222 (895)
T PRK01156 194 SSNLELENIKKQIADDEKSHSITLKEIER 222 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333333333
No 118
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=76.95 E-value=82 Score=38.77 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=16.6
Q ss_pred cccccCCCCCCChHHHHHhhhhcc
Q 005373 190 GATKWNPVCLKTPAEVRQIYSHMK 213 (699)
Q Consensus 190 ~atkw~~~~lkts~ellkvlnri~ 213 (699)
+-.+|...--.|..++......|+
T Consensus 862 ~r~e~~~~~~~~~~~id~lv~~IK 885 (1259)
T KOG0163|consen 862 GREEIISGANSTYRQIDDLVKKIK 885 (1259)
T ss_pred chHHHHhhhhhHHHHHHHHHHHhc
Confidence 446677666677777777777776
No 119
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=76.86 E-value=30 Score=39.25 Aligned_cols=67 Identities=18% Similarity=0.216 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHH--------HhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 005373 224 MVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKA--------AWRSREHEKIRAFIDDLKAEISRERKN 292 (699)
Q Consensus 224 lv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~--------awKskE~eki~a~i~slk~ELe~ERk~ 292 (699)
-|.+|+.+|..++..+.++..+....+..+. |+..+.+ .. .|....-..+.+.++.+.+++..-+..
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAK-FLEDIRE-GLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTE 146 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhh-hhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888888888887777777663 4444443 11 111223355666666666666444433
No 120
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=76.57 E-value=7.7 Score=35.93 Aligned_cols=69 Identities=28% Similarity=0.404 Sum_probs=56.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHH
Q 005373 284 AEISRERKNRQRIEIVNSKLVNELADAKVSA-KRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEAL 352 (699)
Q Consensus 284 ~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~-~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~L 352 (699)
.+|..|+..|..+|....++-.||-+.-.++ ..|=+=.-.+|+.|..+|.=-+.|-+.+.+-+..++.|
T Consensus 1 ~~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~l 70 (100)
T PF06428_consen 1 KELEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESL 70 (100)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999987765 66666678899999999888888888887766555544
No 121
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=76.31 E-value=1.7e+02 Score=35.88 Aligned_cols=70 Identities=23% Similarity=0.373 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHHhHHHhhhhhhhhhh
Q 005373 314 AKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAK 389 (699)
Q Consensus 314 ~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQMKL~dAk 389 (699)
.....++++.=+|.=+-|+..=|.|...|.+..+|+..|++.+ ++++-+|--+-.--.++||+|.+..+|
T Consensus 218 kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~~~------~~~~~~mrd~~~~~~e~~~~~~~~~~k 287 (916)
T KOG0249|consen 218 KNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRRSS------LEKEQELRDHLRTYAERRRETETTNYK 287 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH------HhhhhhhcchhhhhHHHHHhhcchhhh
Confidence 3444555555556556666666778888888888888887422 233333333334445556665555333
No 122
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=76.10 E-value=2e+02 Score=35.37 Aligned_cols=127 Identities=24% Similarity=0.268 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHH--HHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 005373 222 VSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEE--KAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIV 299 (699)
Q Consensus 222 ~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEE--K~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~l 299 (699)
.+....|+.+|+.......+|+-+-.....+++.+.-+|.|= ++.-=..+.+..+..-.-+-.+|+..+-..+-++.-
T Consensus 588 ~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~ 667 (769)
T PF05911_consen 588 TSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETR 667 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344556666777777777777776666666676666666431 111111111112222222222333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHh
Q 005373 300 NSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRE 355 (699)
Q Consensus 300 n~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKre 355 (699)
-.-+-.|+.++..-+...--+|++||.. |.|+...-.+.+.+++..+++
T Consensus 668 ~~~~e~E~~~l~~Ki~~Le~Ele~er~~-------~~e~~~kc~~Le~el~r~~~~ 716 (769)
T PF05911_consen 668 LKDLEAEAEELQSKISSLEEELEKERAL-------SEELEAKCRELEEELERMKKE 716 (769)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhc-------chhhhhHHHHHHHHHHhhhcc
Confidence 3333445555555556666666666653 555555555556666655543
No 123
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=75.63 E-value=86 Score=34.28 Aligned_cols=85 Identities=21% Similarity=0.318 Sum_probs=47.7
Q ss_pred hhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 247 RSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERK 326 (699)
Q Consensus 247 ~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERK 326 (699)
.....++.+|+++|.+.|..- .++-+-.| +.++|.|..=-+.|+. +-|++|+++++
T Consensus 19 ~~~~~e~~~l~~~f~elkeq~-------yk~kLa~L----------q~~Leel~~g~~~eYl-------~~~~~L~~~~k 74 (291)
T KOG4466|consen 19 ANEESEMSNLEKQFSELKEQM-------YKDKLAQL----------QAQLEELGQGTAPEYL-------KRVKKLDESRK 74 (291)
T ss_pred hhhhhhhhhhhhhhhHHHHHH-------HHHHHHHH----------HHHHHHHhccccHHHH-------HHHHHHHHHHH
Confidence 344568899999999987622 22333333 3344555554444443 34566677777
Q ss_pred HHHHHHHHHHHHHHhh--hccHHHHHHHHHh
Q 005373 327 ERELIEEVCDELAKEI--GEDKAEVEALKRE 355 (699)
Q Consensus 327 aRellE~vCdELAkeI--~edkaEVe~LKre 355 (699)
.|-.+-.+-.||..+. .+|+-|+.+-|++
T Consensus 75 erl~~aely~e~~~e~v~~eYe~E~~aAk~e 105 (291)
T KOG4466|consen 75 ERLRVAELYREYCVERVEREYECEIKAAKKE 105 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666555555555443 2455555554443
No 124
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=75.50 E-value=1.9e+02 Score=34.76 Aligned_cols=44 Identities=20% Similarity=0.393 Sum_probs=21.7
Q ss_pred hhhHHHHHHHHHhHHHhhhhhhhhhhh-----------hhHHHhHHHHHHHHHHHHH
Q 005373 364 DDERKMLQMAEVWREERVQMKLVDAKV-----------AVEQKYSQMNKLVAELEAF 409 (699)
Q Consensus 364 EeER~MLqmAEvWREERVQMKL~dAk~-----------~leeK~s~ldkL~~eLE~F 409 (699)
..|+.+.|+..-. +|+|--|++... .+..|.++++.|...|+.|
T Consensus 289 ~kd~~i~~L~~di--~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~ 343 (629)
T KOG0963|consen 289 QKDSEIAQLSNDI--ERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR 343 (629)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4678888776532 344443333322 2344444555555444444
No 125
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=75.18 E-value=88 Score=30.78 Aligned_cols=89 Identities=24% Similarity=0.349 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 005373 224 MVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKL 303 (699)
Q Consensus 224 lv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL 303 (699)
-|-+|..||+.++..--.++.+--..+.+|..|--++ +.+..-+..+..||..=|.-+.-+...=.+.
T Consensus 25 ~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el------------~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~ 92 (140)
T PF10473_consen 25 HVESLERELEMSQENKECLILDAENSKAEIETLEEEL------------EELTSELNQLELELDTLRSEKENLDKELQKK 92 (140)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788889999998888888888888888888876544 3344444555555554444443333333333
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHH
Q 005373 304 ---VNELADAKVSAKRYMQDYEKE 324 (699)
Q Consensus 304 ---~~ELae~Kss~~~a~kelE~E 324 (699)
+.||.-..+++.+.++++|.+
T Consensus 93 q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 93 QEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455655666666666666666
No 126
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=75.18 E-value=1e+02 Score=37.44 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=9.2
Q ss_pred HHHHHHHhhHHHHHHh
Q 005373 252 KLEHFLRKVSEEKAAW 267 (699)
Q Consensus 252 eie~l~KqlaEEK~aw 267 (699)
+++.|+..|.+++...
T Consensus 517 ~~~~li~~l~~~~~~~ 532 (782)
T PRK00409 517 KLNELIASLEELEREL 532 (782)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666666666655533
No 127
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=75.06 E-value=99 Score=34.63 Aligned_cols=35 Identities=14% Similarity=0.258 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 005373 311 KVSAKRYMQDYEKERKERELIEEVCDELAKEIGED 345 (699)
Q Consensus 311 Kss~~~a~kelE~ERKaRellE~vCdELAkeI~ed 345 (699)
-.+...+|.|+++.|..++.|+.+-.+++.++...
T Consensus 345 ~~aY~~LL~Ev~RRr~~~~k~~~i~~~~~eeL~~l 379 (412)
T PF04108_consen 345 LSAYDSLLLEVERRRAVRDKMKKIIREANEELDKL 379 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888888888888777777654
No 128
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=74.86 E-value=1e+02 Score=31.44 Aligned_cols=20 Identities=50% Similarity=0.478 Sum_probs=14.1
Q ss_pred HhhhccHHHHHHHHHhhHHH
Q 005373 340 KEIGEDKAEVEALKRESMKL 359 (699)
Q Consensus 340 keI~edkaEVe~LKres~k~ 359 (699)
++|...+.+++.|+.+...+
T Consensus 159 ~ei~~lks~~~~l~~~~~~~ 178 (190)
T PF05266_consen 159 KEISRLKSEAEALKEEIENA 178 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66667777777777766655
No 129
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=74.66 E-value=1.3e+02 Score=32.51 Aligned_cols=66 Identities=23% Similarity=0.328 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005373 274 KIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEI 342 (699)
Q Consensus 274 ki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI 342 (699)
++.+....|+.|+...|..-..++.... .||..+|..+...-.+++.-|+.-.-++.-..++-..|
T Consensus 181 ~l~~~~~~L~~e~~~Lk~~~~e~~~~D~---~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i 246 (325)
T PF08317_consen 181 KLRERKAELEEELENLKQLVEEIESCDQ---EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKI 246 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555544444433333332 45555555555555555544443333333333333333
No 130
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=74.51 E-value=80 Score=29.96 Aligned_cols=129 Identities=19% Similarity=0.248 Sum_probs=69.6
Q ss_pred CChHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHH
Q 005373 200 KTPAEVRQIYSHMKHLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFI 279 (699)
Q Consensus 200 kts~ellkvlnri~leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i 279 (699)
.+..+|..+++.--..+..+..++-|..+..+++...+.+.+|...--+.+.+++.+-.++.+-.. +...+....
T Consensus 4 lS~~eL~~Ll~d~~~l~~~v~~l~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~-----~~~~L~~~~ 78 (150)
T PF07200_consen 4 LSTEELQELLSDEEKLDAFVKSLPQVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYE-----ELKELESEY 78 (150)
T ss_dssp -TTHHHHHHHHH-HHHHHHGGGGS--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-----HHHHHHHHH
T ss_pred CCHHHHHHHHcCHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 355677777777654455667777789999999999999988888776777777777766663322 111122222
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHh
Q 005373 280 DDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRE 355 (699)
Q Consensus 280 ~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKre 355 (699)
+.+.. +...+..+..-.- ++.-+ +.+-.-.|+.|++||...-+.+-.|..+-++
T Consensus 79 ~~k~~----------~~~~l~~~~s~~~--l~~~L----------~~~~~e~eeeSe~lae~fl~g~~d~~~Fl~~ 132 (150)
T PF07200_consen 79 QEKEQ----------QQDELSSNYSPDA--LLARL----------QAAASEAEEESEELAEEFLDGEIDVDDFLKQ 132 (150)
T ss_dssp HHHHH----------HHHHHHHCHHHHH--HHHHH----------HHHHHHHHHHHHHHC-S-SSSHHHHHHHHHH
T ss_pred HHHHH----------HHHHHHccCCHHH--HHHHH----------HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 22111 2222222222221 11112 2233335678999999988888888887554
No 131
>PRK01156 chromosome segregation protein; Provisional
Probab=74.29 E-value=2.1e+02 Score=34.66 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhH
Q 005373 227 ALEAEVEQARTRIQELETERRSSK 250 (699)
Q Consensus 227 aLk~EL~~Ar~rI~eL~~E~~s~k 250 (699)
.+..+|..-..+|.+|..+.....
T Consensus 473 ~~~~~i~~l~~~i~~l~~~~~~l~ 496 (895)
T PRK01156 473 HYNEKKSRLEEKIREIEIEVKDID 496 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443333
No 132
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=74.09 E-value=59 Score=30.05 Aligned_cols=43 Identities=26% Similarity=0.287 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 005373 269 SREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAK 311 (699)
Q Consensus 269 skE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~K 311 (699)
|.+..++..++.++.++|.+.++.|.++...|+.|+.|+.+.+
T Consensus 2 s~~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~ 44 (106)
T PF05837_consen 2 SLEILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELA 44 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888999999999999999999999999999986543
No 133
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=73.97 E-value=1.2e+02 Score=37.29 Aligned_cols=123 Identities=24% Similarity=0.361 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 272 HEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVN---------------ELADAKVSAKRYMQDYEKERKERELIEEVCD 336 (699)
Q Consensus 272 ~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~---------------ELae~Kss~~~a~kelE~ERKaRellE~vCd 336 (699)
+--|.=|+|.|+.|-. .+|||+-+||..|-. ||.-.++--.-+-+.|..-.|.-++|-..-+
T Consensus 382 q~EIALA~QplrsENa---qLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kne 458 (861)
T PF15254_consen 382 QVEIALAMQPLRSENA---QLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNE 458 (861)
T ss_pred hhhhHhhhhhhhhhhH---HHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHH
Confidence 3446677888888765 588999999999943 3333332222223345555678888888888
Q ss_pred HHHHhhhccHHHHHHHHHhhHHHHhhh-hhhHHHHHHHHHhHHHhhhhhhhhhhhhhHHHhHHHHHHHHHHHHH
Q 005373 337 ELAKEIGEDKAEVEALKRESMKLREEV-DDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAF 409 (699)
Q Consensus 337 ELAkeI~edkaEVe~LKres~k~reE~-EeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~eLE~F 409 (699)
||-|-|...+.|--. +++.+ |+|..+|+--..|-.|=...| +.+++-...|..+++-||+-
T Consensus 459 ellk~~e~q~~Enk~-------~~~~~~ekd~~l~~~kq~~d~e~~rik-----~ev~eal~~~k~~q~kLe~s 520 (861)
T PF15254_consen 459 ELLKVIENQKEENKR-------LRKMFQEKDQELLENKQQFDIETTRIK-----IEVEEALVNVKSLQFKLEAS 520 (861)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhHHHH
Confidence 888887665554433 43443 667777777777765533333 33455555555566665553
No 134
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.58 E-value=2.4e+02 Score=35.09 Aligned_cols=27 Identities=22% Similarity=0.453 Sum_probs=18.5
Q ss_pred CCcccccccccccCCCCCCCCCCCCcc
Q 005373 518 ESGWETVSHLEDQDSSCSPEGSAPSIK 544 (699)
Q Consensus 518 ~sgwETvSh~E~qgSS~Sp~gs~pSvN 544 (699)
.-||=--+++|-=-++--|.|-.|--|
T Consensus 738 ktGWFPenyvEki~~~e~p~~v~Pv~~ 764 (1118)
T KOG1029|consen 738 KTGWFPENYVEKIPAVETPGGVPPVQN 764 (1118)
T ss_pred ccCcCcHHHHhhcccCCCCCCCCchhc
Confidence 346777778887777777777666533
No 135
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=72.97 E-value=1.8e+02 Score=33.39 Aligned_cols=29 Identities=17% Similarity=0.147 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 295 RIEIVNSKLVNELADAKVSAKRYMQDYEK 323 (699)
Q Consensus 295 r~E~ln~KL~~ELae~Kss~~~a~kelE~ 323 (699)
|+-.+...|..++.+..-++.+.+++|-.
T Consensus 147 R~ai~~~~l~~~~~~~i~~l~~~~~~l~~ 175 (420)
T COG4942 147 RLAIYYGALNPARAERIDALKATLKQLAA 175 (420)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 136
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=72.84 E-value=1.4e+02 Score=33.38 Aligned_cols=118 Identities=24% Similarity=0.283 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHH
Q 005373 269 SREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAE 348 (699)
Q Consensus 269 skE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaE 348 (699)
.+-+++|+...++-++-++.=++.-...-.|-+|..-+-.+ +.-+++|-+---+|.-||+||.||-+-+...+.|
T Consensus 21 ~~~eekik~L~~~~~d~~e~~~~v~~~~kvlq~k~~t~~ke-----k~~~Q~l~kt~larsKLeelCRelQr~nk~~keE 95 (391)
T KOG1850|consen 21 EKVEEKIKKLAESEKDNAELKIKVLDYDKVLQVKDLTEKKE-----KRNNQILLKTELARSKLEELCRELQRANKQTKEE 95 (391)
T ss_pred ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhHHHHhhhhhhHHHHHHHHHhHHHhhhhhhhhhhhhhHHHhHHHHHHHHH
Q 005373 349 VEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAE 405 (699)
Q Consensus 349 Ve~LKres~k~reE~EeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~e 405 (699)
-=.--+ .+|||+=+-.+- .|.-|-|...+|++-++..++|+.+
T Consensus 96 ~~~q~k--------~eEerRkea~~~------fqvtL~diqktla~~~~~n~klre~ 138 (391)
T KOG1850|consen 96 ACAQMK--------KEEERRKEAVEQ------FQVTLKDIQKTLAEGRSKNDKLRED 138 (391)
T ss_pred HHHHHH--------HHHHHHHHHHHH------HHhHHHHHHHHHHhcchhhHHHHHH
No 137
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=72.12 E-value=28 Score=40.32 Aligned_cols=58 Identities=21% Similarity=0.336 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 005373 226 AALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSK 302 (699)
Q Consensus 226 ~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~K 302 (699)
.-|+.-+|.||++-++...|+...+.+ |-+|+. .-+++-..|-+|||+|..++.-++|
T Consensus 510 ~llkva~dnar~qekQiq~Ek~ELkmd-------~lrere------------lreslekql~~ErklR~~~qkr~kk 567 (641)
T KOG3915|consen 510 GLLKVAIDNARAQEKQIQLEKTELKMD-------FLRERE------------LRESLEKQLAMERKLRAIVQKRLKK 567 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777888888877777665544422 222322 2244555688888888877665555
No 138
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=71.95 E-value=1.2e+02 Score=30.88 Aligned_cols=81 Identities=26% Similarity=0.280 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHH
Q 005373 280 DDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKL 359 (699)
Q Consensus 280 ~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~ 359 (699)
..|+.=.++-++.|++.+....||.+++..+-..+.++.+.|+..-+.-+....-.+.......-.+++++.++....+.
T Consensus 94 ~~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~~~~s~~~~eK~~~k~~k~ 173 (251)
T cd07653 94 KELKTLISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNLTKADVEKAKANANLK 173 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHH
Confidence 44444455667889999999999999999988888888888887776655555444443333333445666666655544
Q ss_pred H
Q 005373 360 R 360 (699)
Q Consensus 360 r 360 (699)
.
T Consensus 174 ~ 174 (251)
T cd07653 174 T 174 (251)
T ss_pred H
Confidence 3
No 139
>PRK10884 SH3 domain-containing protein; Provisional
Probab=71.93 E-value=75 Score=32.81 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 005373 221 AVSMVAALEAEVEQARTRIQELETE 245 (699)
Q Consensus 221 ~~Slv~aLk~EL~~Ar~rI~eL~~E 245 (699)
....+..|+.||..+++++.++.++
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3455677777777777776665544
No 140
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=71.66 E-value=56 Score=38.94 Aligned_cols=51 Identities=18% Similarity=0.291 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 271 EHEKIRAFIDDLKAEISRERKNRQRIE---IVNSKLVNELADAKVSAKRYMQDY 321 (699)
Q Consensus 271 E~eki~a~i~slk~ELe~ERk~Rkr~E---~ln~KL~~ELae~Kss~~~a~kel 321 (699)
+-+++.+-+..++.++..+-+.++.++ .-+.+|-++|.|-+.-+...-..|
T Consensus 451 eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l 504 (652)
T COG2433 451 EIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKL 504 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555544444433333332 223334444444444333333333
No 141
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=71.38 E-value=46 Score=41.73 Aligned_cols=16 Identities=19% Similarity=0.123 Sum_probs=11.9
Q ss_pred hhhHHHHHhhhccccc
Q 005373 99 VVSARTLAAGLWRLQL 114 (699)
Q Consensus 99 ~vSaRkLAA~LWel~~ 114 (699)
+..++.|...+|.+.|
T Consensus 268 S~eL~dLI~~~L~~dP 283 (1021)
T PTZ00266 268 SKELNILIKNLLNLSA 283 (1021)
T ss_pred CHHHHHHHHHHhcCCh
Confidence 4567788888887765
No 142
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=71.31 E-value=3.7e+02 Score=36.24 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 005373 221 AVSMVAALEAEVEQARTRIQELETE 245 (699)
Q Consensus 221 ~~Slv~aLk~EL~~Ar~rI~eL~~E 245 (699)
.+.-+.-|+.|-++-..|.++|..-
T Consensus 1276 ~~ael~~l~~e~~~wK~R~q~L~~k 1300 (1822)
T KOG4674|consen 1276 KVAELKKLEEENDRWKQRNQDLLEK 1300 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777766666666654
No 143
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=70.82 E-value=85 Score=28.70 Aligned_cols=51 Identities=37% Similarity=0.391 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHH
Q 005373 302 KLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKL 359 (699)
Q Consensus 302 KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~ 359 (699)
++-+=|.+...-..+|++..+.|.+.+.-.+ .+|....+++..|+.+..++
T Consensus 50 ~f~~flken~~k~~rA~k~a~~e~k~~~~k~-------~ei~~l~~~l~~l~~~~~k~ 100 (126)
T PF13863_consen 50 KFDKFLKENEAKRERAEKRAEEEKKKKEEKE-------AEIKKLKAELEELKSEISKL 100 (126)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 4444555556666667777777776555444 44555555555555544433
No 144
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=70.79 E-value=2e+02 Score=33.06 Aligned_cols=10 Identities=30% Similarity=0.172 Sum_probs=5.9
Q ss_pred CCCCCccccc
Q 005373 55 PETPLLKWKV 64 (699)
Q Consensus 55 P~TP~l~Wk~ 64 (699)
|..+...|+.
T Consensus 86 ~~~~~~~~~~ 95 (582)
T PF09731_consen 86 PSKSGASEKV 95 (582)
T ss_pred CCCCcccccc
Confidence 4446666665
No 145
>PRK14154 heat shock protein GrpE; Provisional
Probab=70.44 E-value=88 Score=32.63 Aligned_cols=56 Identities=13% Similarity=0.227 Sum_probs=40.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHH
Q 005373 218 QVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHE 273 (699)
Q Consensus 218 ~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~e 273 (699)
|-+..+.+..|+.+|...+.++.+|...-.....+++.+.|....|+..-+..-.+
T Consensus 47 ~~~~~~~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e 102 (208)
T PRK14154 47 EGLEFPSREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSK 102 (208)
T ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678899999999999999988777777777888777776665544433333
No 146
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=70.38 E-value=2.3e+02 Score=33.42 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhH
Q 005373 235 ARTRIQELETERRSSKKKLEHFLRKVS 261 (699)
Q Consensus 235 Ar~rI~eL~~E~~s~k~eie~l~Kqla 261 (699)
.+.++.+|..+......+++.+-++|+
T Consensus 389 ~~~~~~~~~~~~~~~e~el~~l~~~l~ 415 (650)
T TIGR03185 389 LQDAKSQLLKELRELEEELAEVDKKIS 415 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555555555555553
No 147
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=70.34 E-value=47 Score=30.00 Aligned_cols=83 Identities=27% Similarity=0.318 Sum_probs=54.5
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHHhHHHhhhhhhhhhhhhhHHHhHHHHHHHHHHHHHHh
Q 005373 332 EEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLS 411 (699)
Q Consensus 332 E~vCdELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~eLE~FL~ 411 (699)
-.++..|.|+..-|+.|+........++..+-..+- ++...+.- |.+++.-|.+=..-|.....+|+.||.
T Consensus 6 t~~vkRL~KE~~~Y~kE~~~q~~rle~~k~~~~de~-~iKkq~~v--------l~Et~~mipd~~~RL~~a~~~L~~~l~ 76 (90)
T PF02970_consen 6 TGVVKRLLKEEASYEKEVEEQEARLEKMKAEGEDEY-DIKKQEEV--------LEETKMMIPDCQQRLEKAVEDLEEFLE 76 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSHH-HHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHH-HHHHHHHH--------HHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 357778888888888888888888888776644333 33333333 334444466666677888889999998
Q ss_pred hcCCCCChhhHH
Q 005373 412 SRSINPDIQEMK 423 (699)
Q Consensus 412 sk~~~~d~~~~r 423 (699)
.....-+...-+
T Consensus 77 ~~~~~ee~~~ak 88 (90)
T PF02970_consen 77 EEEGLEELEEAK 88 (90)
T ss_dssp HHHCCCCSHHHH
T ss_pred HCcCchhHHHHh
Confidence 854344444333
No 148
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=70.24 E-value=1.4e+02 Score=31.10 Aligned_cols=105 Identities=26% Similarity=0.376 Sum_probs=57.4
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHH---------HHHHHHHHHHHHH-HHHHHHHHHhhhccHHHHHHHHHhhHHHHhhh
Q 005373 297 EIVNSKLVN---ELADAKVSAKRYM---------QDYEKERKERELI-EEVCDELAKEIGEDKAEVEALKRESMKLREEV 363 (699)
Q Consensus 297 E~ln~KL~~---ELae~Kss~~~a~---------kelE~ERKaRell-E~vCdELAkeI~edkaEVe~LKres~k~reE~ 363 (699)
+.+..|++. ||++.+..+..+. .+. .+-+++..- ...-+.|-.++..+++|+...++..+......
T Consensus 83 ~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~-deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~F 161 (202)
T PF06818_consen 83 ELLREKLGQLEAELAELREELACAGRLKRQCQLLSES-DEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSF 161 (202)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHhhccchhhhcccccc-chhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 445555554 6777666666650 111 111222221 34455566666666666666666666666677
Q ss_pred hhhHHHHHHHHHhHHHhhhhhhhhhhhhhHHHhHHHHHHHHHHHHHH
Q 005373 364 DDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFL 410 (699)
Q Consensus 364 EeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~eLE~FL 410 (699)
+.||. +|.||.= |.+-=.-+|...|-+|=+=-..||.-|
T Consensus 162 e~ER~------~W~eEKe--kVi~YQkQLQ~nYvqMy~rn~~LE~~l 200 (202)
T PF06818_consen 162 EQERR------TWQEEKE--KVIRYQKQLQQNYVQMYQRNQALEREL 200 (202)
T ss_pred HHHHH------HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77776 5888864 233333455566666655555555433
No 149
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=69.97 E-value=1.5 Score=51.57 Aligned_cols=64 Identities=33% Similarity=0.462 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHH---hhHHHHhhh
Q 005373 300 NSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKR---ESMKLREEV 363 (699)
Q Consensus 300 n~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKr---es~k~reE~ 363 (699)
+.-++.++++++.-+...-.++++--.++.-++.-|.++-++|.+.+.+++.|.. +...+++|+
T Consensus 234 ~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDEl 300 (713)
T PF05622_consen 234 SQHLSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDEL 300 (713)
T ss_dssp -------------------------------------------------------------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4556677788887777777777655556666777888888888888888887764 344556666
No 150
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=69.88 E-value=91 Score=31.20 Aligned_cols=85 Identities=20% Similarity=0.348 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 005373 223 SMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSK 302 (699)
Q Consensus 223 Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~K 302 (699)
.-+..|+.++..-..+|.+|..+....+.++..|--.|.+ |.+-.+.+.+.+.++.-++..=-.-.++++.-|..
T Consensus 102 ~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~e-----k~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~ 176 (194)
T PF08614_consen 102 DELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKE-----KNKANEILQDELQALQLQLNMLEEKLRKLEEENRE 176 (194)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888888888888888888888887777665555 45566777788888877777666666778888888
Q ss_pred HHHHHHHHHH
Q 005373 303 LVNELADAKV 312 (699)
Q Consensus 303 L~~ELae~Ks 312 (699)
|+.-+.+.|.
T Consensus 177 Lv~Rwm~~k~ 186 (194)
T PF08614_consen 177 LVERWMQRKA 186 (194)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777765443
No 151
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=69.86 E-value=89 Score=33.93 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHH
Q 005373 223 SMVAALEAEVEQART 237 (699)
Q Consensus 223 Slv~aLk~EL~~Ar~ 237 (699)
.|+..|+.+++.+..
T Consensus 9 ~l~~~l~~~~~~~~~ 23 (314)
T PF04111_consen 9 LLLEQLDKQLEQAEK 23 (314)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666666554
No 152
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=69.38 E-value=1.4e+02 Score=30.55 Aligned_cols=114 Identities=26% Similarity=0.301 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHH
Q 005373 296 IEIVNSKLVNELADAKV---SAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQM 372 (699)
Q Consensus 296 ~E~ln~KL~~ELae~Ks---s~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~reE~EeER~MLqm 372 (699)
+..-|++|+.-|..+.. .+.+-++.|++.+.+-.-+..--..+-++|.+.+-|-+.|.+...++ +.||..|+-
T Consensus 53 i~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kl----e~ErdeL~~ 128 (201)
T PF13851_consen 53 ISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKL----EQERDELYR 128 (201)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 33446666665555443 34555666777777666666677777888888888888888876654 555555542
Q ss_pred HHHhHHHhhhhhhhhhhhhhHHHhHHHH----HHHHHHHHHHhhc
Q 005373 373 AEVWREERVQMKLVDAKVAVEQKYSQMN----KLVAELEAFLSSR 413 (699)
Q Consensus 373 AEvWREERVQMKL~dAk~~leeK~s~ld----kL~~eLE~FL~sk 413 (699)
--.=-=.=||.|..---+.||.|...|. +-.++|...|.+.
T Consensus 129 kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~ 173 (201)
T PF13851_consen 129 KFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAA 173 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2111111255555555556666665544 3455555555553
No 153
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=68.77 E-value=1.2e+02 Score=29.63 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=6.7
Q ss_pred hhccHHHHHHHHHhhHHH
Q 005373 342 IGEDKAEVEALKRESMKL 359 (699)
Q Consensus 342 I~edkaEVe~LKres~k~ 359 (699)
+.+.+.+++.+......+
T Consensus 160 ~~~~~~~~~~~~~~~~~l 177 (191)
T PF04156_consen 160 VQELRSQLERLQENLQQL 177 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 154
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=68.52 E-value=75 Score=30.41 Aligned_cols=81 Identities=19% Similarity=0.327 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHH-------HHHHHHHhHHHhhhhhhhhhhhhhHHHhHHH
Q 005373 327 ERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERK-------MLQMAEVWREERVQMKLVDAKVAVEQKYSQM 399 (699)
Q Consensus 327 aRellE~vCdELAkeI~edkaEVe~LKres~k~reE~EeER~-------MLqmAEvWREERVQMKL~dAk~~leeK~s~l 399 (699)
...-|.+.|++|...|.+...=|..+-.-....-.++|.|+. +|... -++|-. +.......+.||..+|
T Consensus 21 ~t~~Lk~ec~~F~~ki~~F~~iv~~~~~~~~~~A~~VE~eKlkAIG~RN~l~s~---~k~R~~-~~q~lq~~I~Ek~~eL 96 (120)
T PF14931_consen 21 QTQELKEECKEFVEKISEFQKIVKGFIEILDELAKRVENEKLKAIGARNLLKSE---AKQREA-QQQQLQALIAEKKMEL 96 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHhHHH-HHHHHHHHHHHHHHHH
Confidence 344567789999999888888888777666666566665542 22222 222322 4445566789999999
Q ss_pred HHHHHHHHHHHh
Q 005373 400 NKLVAELEAFLS 411 (699)
Q Consensus 400 dkL~~eLE~FL~ 411 (699)
++|+.|.++...
T Consensus 97 ERl~~E~~sL~k 108 (120)
T PF14931_consen 97 ERLRSEYESLQK 108 (120)
T ss_pred HHHHHHHHHHHH
Confidence 999999998654
No 155
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=68.29 E-value=1.6e+02 Score=30.74 Aligned_cols=24 Identities=21% Similarity=0.499 Sum_probs=12.2
Q ss_pred hhhHHHhHHHHHHHHHHHHHHhhc
Q 005373 390 VAVEQKYSQMNKLVAELEAFLSSR 413 (699)
Q Consensus 390 ~~leeK~s~ldkL~~eLE~FL~sk 413 (699)
.+|..+.-+.+.|...-++||..+
T Consensus 133 ~~Lq~Ql~~~e~l~~~~da~l~e~ 156 (193)
T PF14662_consen 133 ATLQRQLCEFESLICQRDAILSER 156 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555544
No 156
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=67.81 E-value=1.1e+02 Score=30.92 Aligned_cols=16 Identities=31% Similarity=0.360 Sum_probs=9.6
Q ss_pred ccHHHHHHHHHhhHHH
Q 005373 344 EDKAEVEALKRESMKL 359 (699)
Q Consensus 344 edkaEVe~LKres~k~ 359 (699)
.|-+.|+.|+++...+
T Consensus 132 ~Dp~~i~~~~~~~~~~ 147 (188)
T PF03962_consen 132 NDPEKIEKLKEEIKIA 147 (188)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 4666666666655544
No 157
>PRK10698 phage shock protein PspA; Provisional
Probab=67.25 E-value=85 Score=32.46 Aligned_cols=94 Identities=16% Similarity=0.327 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hh
Q 005373 275 IRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKE-----------IG 343 (699)
Q Consensus 275 i~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAke-----------I~ 343 (699)
|+-+|+.|.+.|..=|+.--++=...++|.+++.+....+.+. +++++..|..==++||++ |.
T Consensus 29 l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~------e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~ 102 (222)
T PRK10698 29 VRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEW------QEKAELALRKEKEDLARAALIEKQKLTDLIA 102 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_pred ccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHHhHHHhhhhhhhhhh
Q 005373 344 EDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAK 389 (699)
Q Consensus 344 edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQMKL~dAk 389 (699)
.++.+++.......++...+ .+++-|+.++|
T Consensus 103 ~l~~~~~~~~~~~~~L~~~l---------------~~L~~ki~eak 133 (222)
T PRK10698 103 TLEHEVTLVDETLARMKKEI---------------GELENKLSETR 133 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHH
No 158
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=66.86 E-value=64 Score=36.02 Aligned_cols=114 Identities=17% Similarity=0.301 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREH-EKIRAFIDDLKAEISRERKNRQRIEIVNSKL 303 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~-eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL 303 (699)
...|..=+..|+.++..|.............+++-|.|+-..-...+- ..+...+...+.-.+++.+.++.-+.-..++
T Consensus 312 ~~~m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~efF~~f~~F~~~f~ka~~en~~~~~~e~~~~~~~ 391 (432)
T smart00498 312 IEVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKDTSPEEFFKDFNEFLKEFSKAAEENIKKEEEEEERRKQL 391 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444477788888888888888888888888888776542111111 3455555555555555544444445556666
Q ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 304 VNELADAKVS-----AKRYMQDYEKERKERELIEEVCDEL 338 (699)
Q Consensus 304 ~~ELae~Kss-----~~~a~kelE~ERKaRellE~vCdEL 338 (699)
++|..+-... -.+.+.+...++....+|..||.++
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~d~~~~~~ 431 (432)
T smart00498 392 VKETTEYEQSSSRQKERNPSMDFEVERDFLGVLDSLLEEL 431 (432)
T ss_pred HHHHHhhhhhhhhhhhccchhhhhhhhhhhhhHHHHHHhh
Confidence 6666654442 1244666777777777888888765
No 159
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=66.80 E-value=1.8e+02 Score=35.36 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=12.6
Q ss_pred hHHHHHHHHHhhHHHHHHh
Q 005373 249 SKKKLEHFLRKVSEEKAAW 267 (699)
Q Consensus 249 ~k~eie~l~KqlaEEK~aw 267 (699)
.+.+++.|+.+|.+++...
T Consensus 509 ~~~~~~~li~~L~~~~~~~ 527 (771)
T TIGR01069 509 FKEEINVLIEKLSALEKEL 527 (771)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3446778888777776543
No 160
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=66.56 E-value=1.7e+02 Score=30.54 Aligned_cols=122 Identities=21% Similarity=0.268 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhh-hhHHHHHHHHHHHHHHH--HHHHHH------------hhhhH
Q 005373 232 VEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWR-SREHEKIRAFIDDLKAE--ISRERK------------NRQRI 296 (699)
Q Consensus 232 L~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awK-skE~eki~a~i~slk~E--Le~ERk------------~Rkr~ 296 (699)
+++-|.++.++.++-+ +|+.=..=||..-| .---.-|+.+||+|.+. +.-|+= .-+..
T Consensus 7 ~~ekr~~l~eIf~esk-------Dff~LkelEKlG~kKgIv~~tvKdvLQsLvDD~lV~~eKIgtSnyywsfps~a~~~~ 79 (203)
T KOG3433|consen 7 SDEKRMILLEIFQESK-------DFFQLKELEKLGSKKGIVWQTVKDVLQSLVDDGLVIKEKIGTSNYYWSFPSEAICDR 79 (203)
T ss_pred hHHHHHHHHHHHHhhH-------hHHHHHHHHHhCCccceehhHHHHHHHHHhccchHHHHHhcccccccccchHHHHHH
Confidence 4566666666666432 23333333444333 22234466667776553 222321 11223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHH
Q 005373 297 EIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLR 360 (699)
Q Consensus 297 E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~r 360 (699)
++.-..|-.+|+..+.-.....+-.|++++.|+--|+--|||++...-.+.+++.||-+..+.+
T Consensus 80 ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~ 143 (203)
T KOG3433|consen 80 KSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQ 143 (203)
T ss_pred HHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444567777777777777777889999999999999999999999988888888888877763
No 161
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=66.53 E-value=1.9e+02 Score=32.95 Aligned_cols=41 Identities=24% Similarity=0.343 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHH
Q 005373 316 RYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKL 359 (699)
Q Consensus 316 ~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~ 359 (699)
-.++.|+.||-..+.||+.-+++.. -...|+..||++..-+
T Consensus 248 ~~~~~LqEEr~R~erLEeqlNd~~e---lHq~Ei~~LKqeLa~~ 288 (395)
T PF10267_consen 248 FILEALQEERYRYERLEEQLNDLTE---LHQNEIYNLKQELASM 288 (395)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhH
Confidence 4566778889888999999988865 3678888888886544
No 162
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=66.43 E-value=59 Score=39.23 Aligned_cols=88 Identities=23% Similarity=0.246 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHH--HHhh-------hhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEK--AAWR-------SREHEKIRAFIDDLKAEISRERKNRQR 295 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK--~awK-------skE~eki~a~i~slk~ELe~ERk~Rkr 295 (699)
|..|+..+..-+..+.-|++|-......++.+-++..|=+ +.|= .+.-+.|..-+.+...||+.++..++|
T Consensus 526 i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~r 605 (698)
T KOG0978|consen 526 IGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKR 605 (698)
T ss_pred HHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444433333211 1111 122334555567778899999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005373 296 IEIVNSKLVNELADAKV 312 (699)
Q Consensus 296 ~E~ln~KL~~ELae~Ks 312 (699)
+|.-+.+|-+.|..++.
T Consensus 606 leEE~e~L~~kle~~k~ 622 (698)
T KOG0978|consen 606 LEEELERLKRKLERLKK 622 (698)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999888876553
No 163
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=66.37 E-value=2.1e+02 Score=34.62 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=30.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhH
Q 005373 220 SAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVS 261 (699)
Q Consensus 220 s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~Kqla 261 (699)
.-++.+..|..+|.+.++.+.++..+....+.+.+.|-+++.
T Consensus 179 ~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~ 220 (670)
T KOG0239|consen 179 KLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLG 220 (670)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 345667788888888888888888877776666666666555
No 164
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=66.05 E-value=2.3e+02 Score=31.81 Aligned_cols=20 Identities=15% Similarity=0.233 Sum_probs=10.3
Q ss_pred hhhhhhhhhhhHHHhHHHHH
Q 005373 382 QMKLVDAKVAVEQKYSQMNK 401 (699)
Q Consensus 382 QMKL~dAk~~leeK~s~ldk 401 (699)
+-+|..++..++.-...++.
T Consensus 297 ~~~l~~~~~~l~~a~~~l~~ 316 (457)
T TIGR01000 297 NQKLLELESKIKSLKEDSQK 316 (457)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 34555555555554444544
No 165
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=66.02 E-value=2.1e+02 Score=33.36 Aligned_cols=10 Identities=30% Similarity=0.136 Sum_probs=5.6
Q ss_pred cccccccccC
Q 005373 522 ETVSHLEDQD 531 (699)
Q Consensus 522 ETvSh~E~qg 531 (699)
|+|+-+-.|+
T Consensus 476 e~v~pvs~q~ 485 (575)
T KOG4403|consen 476 EFVKPVSPQI 485 (575)
T ss_pred hcccccCCCC
Confidence 4565555555
No 166
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=65.81 E-value=4e+02 Score=34.57 Aligned_cols=26 Identities=12% Similarity=0.378 Sum_probs=12.0
Q ss_pred HhhhhhhhhhhhhhHHHhHHHHHHHH
Q 005373 379 ERVQMKLVDAKVAVEQKYSQMNKLVA 404 (699)
Q Consensus 379 ERVQMKL~dAk~~leeK~s~ldkL~~ 404 (699)
+-|+.+|.+++..|++-...+..+..
T Consensus 924 eel~a~L~e~r~rL~~l~~el~~~~~ 949 (1353)
T TIGR02680 924 DEIRARLAETRAALASGGRELPRLAE 949 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555555555444444444443333
No 167
>KOG3470 consensus Beta-tubulin folding cofactor A [Posttranslational modification, protein turnover, chaperones]
Probab=64.60 E-value=85 Score=29.92 Aligned_cols=90 Identities=22% Similarity=0.314 Sum_probs=58.5
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHHhHHHhhhhhhhhhhhhhHHHhHHHHHHHHHHHHHHh
Q 005373 332 EEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLS 411 (699)
Q Consensus 332 E~vCdELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~eLE~FL~ 411 (699)
-.+|..|.|++.-|+.||..--...+++++.-.++--+=+=.||.-|=|+= +-+=+.-|.+.-.+||.||.
T Consensus 12 t~vvkRlvKE~~~Yekev~~eeakvakl~~dg~d~ydlkkQeeVl~et~~m---------lPD~~~RL~~a~~DLe~~l~ 82 (107)
T KOG3470|consen 12 TGVVKRLVKEVEYYEKEVKEEEAKVAKLKDDGADPYDLKKQEEVLKETRMM---------LPDSQRRLRKAYEDLESILA 82 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH---------ChHHHHHHHHHHHHHHHHHh
Confidence 357777888888787777766666666666665666666666666665542 34445556677789999998
Q ss_pred hcCCCCChhhHHHHHHHHH
Q 005373 412 SRSINPDIQEMKEAEMLRQ 430 (699)
Q Consensus 412 sk~~~~d~~~~r~ae~~rq 430 (699)
.-+..-+..+.+.|..+-+
T Consensus 83 ~~~~~ee~~e~~~A~~~l~ 101 (107)
T KOG3470|consen 83 DEQYLEETPELKSANTYLD 101 (107)
T ss_pred cccchhccHHHHHHHHHHH
Confidence 8654555556666644433
No 168
>PRK12704 phosphodiesterase; Provisional
Probab=64.42 E-value=2.8e+02 Score=32.32 Aligned_cols=14 Identities=29% Similarity=0.351 Sum_probs=5.8
Q ss_pred HHhhhhHHHHHHHH
Q 005373 290 RKNRQRIEIVNSKL 303 (699)
Q Consensus 290 Rk~Rkr~E~ln~KL 303 (699)
+++-+|.+.|++|.
T Consensus 89 ~rL~~Ree~Le~r~ 102 (520)
T PRK12704 89 KRLLQKEENLDRKL 102 (520)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 169
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=64.35 E-value=3.3e+02 Score=33.12 Aligned_cols=18 Identities=0% Similarity=0.278 Sum_probs=8.7
Q ss_pred HhhhHHHHHHHHHhhHHH
Q 005373 246 RRSSKKKLEHFLRKVSEE 263 (699)
Q Consensus 246 ~~s~k~eie~l~KqlaEE 263 (699)
+...+.+|.+-++.+..+
T Consensus 556 ~~~ar~ei~~rv~~Lk~~ 573 (717)
T PF10168_consen 556 QDLAREEIQRRVKLLKQQ 573 (717)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555555555444
No 170
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=64.28 E-value=5.2 Score=36.53 Aligned_cols=37 Identities=35% Similarity=0.473 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhh
Q 005373 327 ERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEV 363 (699)
Q Consensus 327 aRellE~vCdELAkeI~edkaEVe~LKres~k~reE~ 363 (699)
+..++++.=.+-..-|.+.+++++.|..+...++.+.
T Consensus 87 A~~i~~~A~~~a~~i~~~A~~~~~~l~~~~~~lk~~~ 123 (131)
T PF05103_consen 87 AEEIIEEAQKEAEEIIEEARAEAERLREEIEELKRQA 123 (131)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445544444444444455555555555444443333
No 171
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=63.85 E-value=3.9e+02 Score=33.68 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=24.8
Q ss_pred HHHHHHHHHhHHHhhhhhhhhhhhhhHHHhHHHHHHHHHHHHHHhh
Q 005373 367 RKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSS 412 (699)
Q Consensus 367 R~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~eLE~FL~s 412 (699)
-+|=.+-...-+.|-|.|+.+--+ ++ -.++.|+.|+|.+=.-
T Consensus 1066 aemdeik~~~~edrakqkei~k~L-~e---helenLrnEieklndk 1107 (1424)
T KOG4572|consen 1066 AEMDEIKDGKCEDRAKQKEIDKIL-KE---HELENLRNEIEKLNDK 1107 (1424)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHH
Confidence 344455555556666666665433 23 3466788888876544
No 172
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=63.64 E-value=1.8e+02 Score=29.87 Aligned_cols=114 Identities=25% Similarity=0.380 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLV 304 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~ 304 (699)
+.+.+.=|+.|.++..-+.- ....++ ||.++... +|+.- -+-+.+++..+..+|. +.|+.++.+|+.=.
T Consensus 99 ~~~w~~al~na~a~lehq~~----R~~NLe-Ll~~~g~n--aW~~~-n~~Le~~~~~le~~l~---~~k~~ie~vN~~RK 167 (221)
T PF05700_consen 99 VEAWKEALDNAYAQLEHQRL----RLENLE-LLSKYGEN--AWLIH-NEQLEAMLKRLEKELA---KLKKEIEEVNRERK 167 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHH-HHHHHhHH--HHHHH-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 45555555555554322211 112232 56666654 56532 2334444444444443 45566666665432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHH
Q 005373 305 NELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEV 349 (699)
Q Consensus 305 ~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEV 349 (699)
..=.++..-+...-+....=-...--||..|-+|-.+|.+.+++-
T Consensus 168 ~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~ 212 (221)
T PF05700_consen 168 RRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKA 212 (221)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222212222222233445666666654444444333
No 173
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=63.56 E-value=1.3e+02 Score=28.47 Aligned_cols=59 Identities=32% Similarity=0.460 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHh
Q 005373 297 EIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRE 355 (699)
Q Consensus 297 E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKre 355 (699)
+.+..+|-.+|+-...++.++--=++.-++.++--+....++-.+|...+.+++.||.+
T Consensus 45 ~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~ 103 (139)
T PF05615_consen 45 QFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEE 103 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555554455555555555555555555555555555555443
No 174
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=63.36 E-value=3.9e+02 Score=33.62 Aligned_cols=93 Identities=18% Similarity=0.181 Sum_probs=65.6
Q ss_pred CCCChHHHHHhhhhcc-cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHH
Q 005373 198 CLKTPAEVRQIYSHMK-HLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIR 276 (699)
Q Consensus 198 ~lkts~ellkvlnri~-leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~ 276 (699)
....++.++.|||.+. -.=.+...-+.|.-|..+|.+-++.|++-+++--.+++.++. |....++++-...|.-+++
T Consensus 155 G~~~~t~l~~vl~~~~d~LyKP~GrnP~iNq~l~klkq~~~ei~e~eke~a~yh~lLe~--r~~~~~rl~~l~~elr~~~ 232 (984)
T COG4717 155 GSPASTKLLEVLNKEADSLYKPSGRNPQINQLLEKLKQERNEIDEAEKEYATYHKLLES--RRAEHARLAELRSELRADR 232 (984)
T ss_pred CCcchHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHH
Confidence 3556788999999885 333555666889999999999999999999888888877765 3445555655666666666
Q ss_pred HHHHHHHHHHHHHHHh
Q 005373 277 AFIDDLKAEISRERKN 292 (699)
Q Consensus 277 a~i~slk~ELe~ERk~ 292 (699)
..|+.+.+.++.=+.+
T Consensus 233 ~~i~~~~~~v~l~~~l 248 (984)
T COG4717 233 DHIRALRDAVELWPRL 248 (984)
T ss_pred HHHHHHHHHHhhHHHH
Confidence 6666666655544433
No 175
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=63.14 E-value=1.9e+02 Score=29.92 Aligned_cols=15 Identities=7% Similarity=0.264 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhhccc
Q 005373 423 KEAEMLRQAAASVNI 437 (699)
Q Consensus 423 r~ae~~rqs~eSv~~ 437 (699)
.-.+.+++++++|+.
T Consensus 222 ~~~e~~~~~~~~id~ 236 (261)
T cd07648 222 QVHEEFKRQVDELTV 236 (261)
T ss_pred HHHHHHHHHHHhCCH
Confidence 445678888888854
No 176
>PRK10869 recombination and repair protein; Provisional
Probab=62.83 E-value=3e+02 Score=32.12 Aligned_cols=34 Identities=3% Similarity=0.009 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhH
Q 005373 228 LEAEVEQARTRIQELETERRSSKKKLEHFLRKVS 261 (699)
Q Consensus 228 Lk~EL~~Ar~rI~eL~~E~~s~k~eie~l~Kqla 261 (699)
+-.++..+..++.+|....+...+++|.|--|+.
T Consensus 162 ~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~ 195 (553)
T PRK10869 162 AYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLK 195 (553)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555544443
No 177
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=62.38 E-value=1.7e+02 Score=28.95 Aligned_cols=54 Identities=19% Similarity=0.337 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHH-HHHHHh-hhhHHHHHHHH
Q 005373 250 KKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEI-SRERKN-RQRIEIVNSKL 303 (699)
Q Consensus 250 k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~EL-e~ERk~-Rkr~E~ln~KL 303 (699)
+-||.+|+|.|.+-+--+-.+--..+...+..+++.+ ..-..+ -.++..++.+|
T Consensus 20 qgEI~~FvkEFE~KRgdRE~~~L~~~~~~~~e~~e~~lp~~~~~~~~~L~~l~~~l 75 (145)
T PF14942_consen 20 QGEIRYFVKEFEEKRGDREVRVLENLTEMISETNEHILPRCIELMQQNLEQLLERL 75 (145)
T ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3478899999988777777777778888888887665 444444 34666666666
No 178
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=62.12 E-value=2e+02 Score=29.91 Aligned_cols=29 Identities=31% Similarity=0.643 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005373 315 KRYMQDYEKERKERELIEEVCDELAKEIG 343 (699)
Q Consensus 315 ~~a~kelE~ERKaRellE~vCdELAkeI~ 343 (699)
...-..|+...+..+=|-.+||||.-.++
T Consensus 178 ~SLe~~LeQK~kEn~ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 178 QSLEESLEQKTKENEELTKICDELISKMG 206 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445677777777888899999977654
No 179
>PRK14140 heat shock protein GrpE; Provisional
Probab=61.90 E-value=1.9e+02 Score=29.81 Aligned_cols=47 Identities=17% Similarity=0.357 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhh
Q 005373 222 VSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWR 268 (699)
Q Consensus 222 ~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awK 268 (699)
--+|..|+.+|+..+..|.+|...-....-+++.+.|....|+...+
T Consensus 36 ~~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~ 82 (191)
T PRK14140 36 AELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAE 82 (191)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777766666666655555555555555555555544433
No 180
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=61.87 E-value=2.8e+02 Score=33.95 Aligned_cols=42 Identities=17% Similarity=0.198 Sum_probs=22.2
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 287 SRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKER 328 (699)
Q Consensus 287 e~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaR 328 (699)
..|+|+++..+.--++.-+|=..-|--..++-|+.|+++++.
T Consensus 296 kee~Klekd~KKqqkekEkeEKrrKdE~Ek~kKqeek~KR~k 337 (811)
T KOG4364|consen 296 KEETKLEKDIKKQQKEKEKEEKRRKDEQEKLKKQEEKQKRAK 337 (811)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 344555555544444444444444444555556666666554
No 181
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=61.11 E-value=73 Score=27.79 Aligned_cols=16 Identities=44% Similarity=0.484 Sum_probs=10.9
Q ss_pred HhhhccHHHHHHHHHh
Q 005373 340 KEIGEDKAEVEALKRE 355 (699)
Q Consensus 340 keI~edkaEVe~LKre 355 (699)
.+|.+.++|+++|+++
T Consensus 47 ~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 47 EENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456677777777766
No 182
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=61.05 E-value=93 Score=36.81 Aligned_cols=94 Identities=17% Similarity=0.292 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHH
Q 005373 296 IEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEV 375 (699)
Q Consensus 296 ~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEv 375 (699)
++.+=.+|.+||+.++.+.-+++- +.|.+...+++.+ |+.-.++.+.+..+..... .+.+|.+
T Consensus 3 ad~~~~~L~~eL~~le~~ni~~l~--~s~~~v~~l~~~l-d~a~~e~d~le~~l~~y~~-------------~L~~~~~- 65 (701)
T PF09763_consen 3 ADAFEERLSKELSALEAANIHSLL--ESEKQVNSLMEYL-DEALAECDELESWLSLYDV-------------ELNSVRD- 65 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-------------HHHHHHH-
Confidence 567788999999999999988874 4445555565555 3333333333333333222 2223322
Q ss_pred hHHHhhhhhhhhhhh-hhHHHhHHHHHHHHHHHHHHhh
Q 005373 376 WREERVQMKLVDAKV-AVEQKYSQMNKLVAELEAFLSS 412 (699)
Q Consensus 376 WREERVQMKL~dAk~-~leeK~s~ldkL~~eLE~FL~s 412 (699)
+|..+|.+. .|+-+.+=-..|..||+.+|.+
T Consensus 66 ------di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll~~ 97 (701)
T PF09763_consen 66 ------DIEYIESQNNGLQVQSANQKLLLNELENLLDT 97 (701)
T ss_pred ------HHHHHHhhcCchhhHHHHHHHHHHHHHHHHHh
Confidence 455555554 3344444455677777777765
No 183
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=60.94 E-value=4.7e+02 Score=33.66 Aligned_cols=119 Identities=14% Similarity=0.231 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh-----hhhHH
Q 005373 223 SMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKN-----RQRIE 297 (699)
Q Consensus 223 Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~-----Rkr~E 297 (699)
+....|++|+..-.+++..|++|..++.+..|-+-.|... ..++.+...+.|+.+++.+..-|.. -++++
T Consensus 173 a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl-----~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~ 247 (1109)
T PRK10929 173 AQLTALQAESAALKALVDELELAQLSANNRQELARLRSEL-----AKKRSQQLDAYLQALRNQLNSQRQREAERALESTE 247 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777888888777766544433333321 2234444444444444444432211 01111
Q ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHH
Q 005373 298 -----------------IVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALK 353 (699)
Q Consensus 298 -----------------~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LK 353 (699)
..|++|+.+|...-. ++..-.+....+++.-+.+.+-....++.++.|+
T Consensus 248 ~~~~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~-------~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~ 313 (1109)
T PRK10929 248 LLAEQSGDLPKSIVAQFKINRELSQALNQQAQ-------RMDLIASQQRQAASQTLQVRQALNTLREQSQWLG 313 (1109)
T ss_pred HhHHhhccCChHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 246666666654332 2222234444455555555555555666665554
No 184
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=60.81 E-value=37 Score=28.75 Aligned_cols=57 Identities=26% Similarity=0.331 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhccHHHHHHHH
Q 005373 296 IEIVNSKLVNELADAKVSAKRYMQDYEKERKE-RELIEEVCDELAKEIGEDKAEVEALK 353 (699)
Q Consensus 296 ~E~ln~KL~~ELae~Kss~~~a~kelE~ERKa-RellE~vCdELAkeI~edkaEVe~LK 353 (699)
++.|+++|.+|+. ++..+.+.++-|..-++. +.-++.-.++--..|.-++.+++.++
T Consensus 3 i~~L~~~i~~E~k-i~~Gae~m~~~~~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~ 60 (70)
T PF02185_consen 3 IEELQKKIDKELK-IKEGAENMLQAYSTDKKKVLSEAESQLRESNQKIELLREQLEKLQ 60 (70)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHCCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444442 344444444444333333 33333334444444444444444443
No 185
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=60.78 E-value=2.5e+02 Score=30.58 Aligned_cols=18 Identities=28% Similarity=0.445 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHhhc
Q 005373 396 YSQMNKLVAELEAFLSSR 413 (699)
Q Consensus 396 ~s~ldkL~~eLE~FL~sk 413 (699)
..++.+|..+++.|+.+|
T Consensus 322 ~~~~~~l~~~~~~fv~~R 339 (339)
T cd09238 322 QEAVRRLKQECEDFVMTR 339 (339)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 446777888888887653
No 186
>PRK00106 hypothetical protein; Provisional
Probab=60.78 E-value=3.4e+02 Score=32.05 Aligned_cols=7 Identities=29% Similarity=0.596 Sum_probs=3.6
Q ss_pred HHHHHHH
Q 005373 423 KEAEMLR 429 (699)
Q Consensus 423 r~ae~~r 429 (699)
|+++|||
T Consensus 243 reGrNir 249 (535)
T PRK00106 243 REGRNIR 249 (535)
T ss_pred CCcchHH
Confidence 3555554
No 187
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=60.54 E-value=94 Score=32.71 Aligned_cols=62 Identities=26% Similarity=0.310 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhh
Q 005373 303 LVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVD 364 (699)
Q Consensus 303 L~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~reE~E 364 (699)
|..|.+.++.-+.++-.++|+..+.=+-.+.=-++|-|.+.+...|...|..++.++++.++
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 44444444444555555555555555555555556666666666667777777777776664
No 188
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=60.35 E-value=1e+02 Score=28.49 Aligned_cols=28 Identities=18% Similarity=0.362 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005373 316 RYMQDYEKERKERELIEEVCDELAKEIG 343 (699)
Q Consensus 316 ~a~kelE~ERKaRellE~vCdELAkeI~ 343 (699)
++-++|+.+|+...+|-.|---|.-|-|
T Consensus 62 ~~~~~lk~~r~~~~v~k~v~q~lI~gSg 89 (106)
T PF05837_consen 62 KLEKELKKSRQRWRVMKNVFQALIVGSG 89 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3345566666666666666665555544
No 189
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=60.09 E-value=1.6e+02 Score=30.48 Aligned_cols=81 Identities=33% Similarity=0.535 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHH---HHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 005373 230 AEVEQARTRIQELETERRSSKK---KLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNE 306 (699)
Q Consensus 230 ~EL~~Ar~rI~eL~~E~~s~k~---eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~E 306 (699)
+|--|.|+ |.+|+.|++.... +-|+|.--|. +|+++ |+..||.|+.-.+++|.-|.|+...
T Consensus 107 aE~rhrr~-i~eLe~EKrkh~~~~aqgDD~t~lLE--------kEReR-------Lkq~lE~Ek~~~~~~EkE~~K~~~~ 170 (192)
T PF09727_consen 107 AEKRHRRT-IQELEEEKRKHAEDMAQGDDFTNLLE--------KERER-------LKQQLEQEKAQQKKLEKEHKKLVSQ 170 (192)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHccchHHHHHH--------HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 8889988876543 2233333332 23333 4678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005373 307 LADAKVSAKRYMQDYEKERK 326 (699)
Q Consensus 307 Lae~Kss~~~a~kelE~ERK 326 (699)
|.|-+.-.+.++--|-+|+|
T Consensus 171 l~eE~~k~K~~~l~Lv~E~k 190 (192)
T PF09727_consen 171 LEEERTKLKSFVLMLVKERK 190 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 88877777777777777765
No 190
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=60.07 E-value=4.6e+02 Score=33.31 Aligned_cols=66 Identities=30% Similarity=0.247 Sum_probs=36.5
Q ss_pred ccHHHHHHHHHhhH-HHHhhhhhhHHHHHHHHHhHHHhhhhhhhhhhhhhHHHhHHHHHHHHHHHHHHhh
Q 005373 344 EDKAEVEALKRESM-KLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSS 412 (699)
Q Consensus 344 edkaEVe~LKres~-k~reE~EeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~eLE~FL~s 412 (699)
-||+|.+++|+|.. +.-.|+=+||+=|-++-.=|.|+.+-+-.+...+|.+--- +|..|++.....
T Consensus 1113 kdK~e~er~~rE~n~s~i~~~V~e~krL~~~~~k~~e~L~k~~~~~leql~e~~k---al~~e~~~~~e~ 1179 (1189)
T KOG1265|consen 1113 KDKAERERRKRELNSSNIKEFVEERKRLAEKQSKRQEQLVKKHLEVLEQLAEEEK---ALDAEAEQEYEE 1179 (1189)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHH
Confidence 35666666666632 2234555666666666666666666666665555554321 255555555444
No 191
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=59.97 E-value=2.2e+02 Score=31.54 Aligned_cols=110 Identities=19% Similarity=0.315 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 005373 223 SMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSK 302 (699)
Q Consensus 223 Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~K 302 (699)
.++-.++.+|.+|+.+|+|+++-.+..+.++...+-+- +-+..-|.-+..| =-=+|++++.++.|
T Consensus 179 L~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kq------------es~eERL~QlqsE---N~LLrQQLddA~~K 243 (305)
T PF14915_consen 179 LALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQ------------ESLEERLSQLQSE---NMLLRQQLDDAHNK 243 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH------------HHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 35778889999999999999998777777666555432 1111111111111 12356677766666
Q ss_pred HH-HH--HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhccHH
Q 005373 303 LV-NE--LADAKVSAKRYMQDYEKERKEREL-IEEVCDELAKEIGEDKA 347 (699)
Q Consensus 303 L~-~E--Lae~Kss~~~a~kelE~ERKaRel-lE~vCdELAkeI~edka 347 (699)
-- +| +.++.--|...++.|--|...+.+ ||+=-.||..+....+.
T Consensus 244 ~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkE 292 (305)
T PF14915_consen 244 ADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKE 292 (305)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 53 44 666666676666666555544443 55555555555444433
No 192
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=59.30 E-value=3.8e+02 Score=33.99 Aligned_cols=75 Identities=20% Similarity=0.166 Sum_probs=40.5
Q ss_pred CCChHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHH
Q 005373 199 LKTPAEVRQIYSHMKHLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAF 278 (699)
Q Consensus 199 lkts~ellkvlnri~leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~ 278 (699)
-+|..+++..|.|+|++-.. +-.|+..=|--.+....+. +-+-.+--+++++++.-..-..+--|.+..+
T Consensus 712 ~~~~~~vl~~Lara~y~~~~-----~~eak~~ll~a~~~~p~~~-----~v~FN~a~v~kkla~s~lr~~k~t~eev~~a 781 (1018)
T KOG2002|consen 712 KKNRSEVLHYLARAWYEAGK-----LQEAKEALLKARHLAPSNT-----SVKFNLALVLKKLAESILRLEKRTLEEVLEA 781 (1018)
T ss_pred ccCCHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHhCCccc-----hHHhHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 45667999999999954322 2233322222222222221 1344566677788777665555555666666
Q ss_pred HHHHH
Q 005373 279 IDDLK 283 (699)
Q Consensus 279 i~slk 283 (699)
++.++
T Consensus 782 ~~~le 786 (1018)
T KOG2002|consen 782 VKELE 786 (1018)
T ss_pred HHHHH
Confidence 55543
No 193
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=59.26 E-value=1.5e+02 Score=27.57 Aligned_cols=15 Identities=33% Similarity=0.499 Sum_probs=5.6
Q ss_pred HHHHHHHHHHhhhcc
Q 005373 331 IEEVCDELAKEIGED 345 (699)
Q Consensus 331 lE~vCdELAkeI~ed 345 (699)
|+++-+.|...+.++
T Consensus 135 l~~~~~~l~~~~~~~ 149 (202)
T PF01442_consen 135 LEELSEELTERAEEL 149 (202)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHhHhhhHHHH
Confidence 333333333333333
No 194
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=59.01 E-value=2.1e+02 Score=33.43 Aligned_cols=106 Identities=20% Similarity=0.347 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHH
Q 005373 295 RIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAE 374 (699)
Q Consensus 295 r~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAE 374 (699)
++|.++..+..-+.+++ ++++...++|.++ .++|+-|-+|--.+..-..|...++.+..++ .-=-.
T Consensus 348 qlen~k~~~e~~~~e~~-~l~~~~~~~e~~k---k~~e~k~~q~q~k~~k~~kel~~~~E~n~~l----------~knq~ 413 (493)
T KOG0804|consen 348 QLENQKQYYELLITEAD-SLKQESSDLEAEK---KIVERKLQQLQTKLKKCQKELKEEREENKKL----------IKNQD 413 (493)
T ss_pred HHHhHHHHHHHHHHHHH-hhhhhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhhHH
Confidence 44555555544444433 4566677777655 4788888888777777666666554333333 33336
Q ss_pred HhHH--HhhhhhhhhhhhhhHHHhHHHHHHHHHHHHHHhhcC
Q 005373 375 VWRE--ERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSSRS 414 (699)
Q Consensus 375 vWRE--ERVQMKL~dAk~~leeK~s~ldkL~~eLE~FL~sk~ 414 (699)
+|+. +-++-.+.+|..+.+++..-|..-..+|=-||.+..
T Consensus 414 vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~qq 455 (493)
T KOG0804|consen 414 VWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLEAQQ 455 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhhhh
Confidence 7764 344455667777777877777777777778888754
No 195
>PF13514 AAA_27: AAA domain
Probab=58.77 E-value=4.7e+02 Score=32.97 Aligned_cols=37 Identities=19% Similarity=0.317 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHH
Q 005373 226 AALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSE 262 (699)
Q Consensus 226 ~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaE 262 (699)
.....+|+.++..+..+.+........+...+..+..
T Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 650 (1111)
T PF13514_consen 614 LEAAEELRAARAELEALRARRAAARAALAAALAALGP 650 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 3344666666666666666666666666666655433
No 196
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=58.74 E-value=3.9e+02 Score=32.07 Aligned_cols=128 Identities=22% Similarity=0.257 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh--HHHHHHhhhhHHHH---HHHHHHHHHHHHHHHHHhhhhHHHHH
Q 005373 226 AALEAEVEQARTRIQELETERRSSKKKLEHFLRKV--SEEKAAWRSREHEK---IRAFIDDLKAEISRERKNRQRIEIVN 300 (699)
Q Consensus 226 ~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~Kql--aEEK~awKskE~ek---i~a~i~slk~ELe~ERk~Rkr~E~ln 300 (699)
.+|+.|+.+-+..+..|...-+..-++.+.|.+-. -++++.---+.-+. -..-...|-+.|.-+|-.=-|+-+-|
T Consensus 83 ~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN 162 (617)
T PF15070_consen 83 QQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQN 162 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhH
Confidence 36777877777777777765554433333332221 12222110000000 00113334445556666667788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHH
Q 005373 301 SKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALK 353 (699)
Q Consensus 301 ~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LK 353 (699)
+.|..-|.|+..+|-+...+-=.=.-+-..-..|-.||++.+++++.++..||
T Consensus 163 ~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~ 215 (617)
T PF15070_consen 163 RELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLK 215 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888765311122333334444566666666666666554
No 197
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=58.39 E-value=3.2e+02 Score=32.00 Aligned_cols=64 Identities=23% Similarity=0.340 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH--HHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 005373 230 AEVEQARTRIQELETERRSSKKKLEHF--LRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNEL 307 (699)
Q Consensus 230 ~EL~~Ar~rI~eL~~E~~s~k~eie~l--~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~EL 307 (699)
++|..-+....++++|..+.+.+...+ .+++.|.|+ .+...-|..+..||.+|| -+|.+|.+.+
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~-------~q~q~k~~k~~kel~~~~-------E~n~~l~knq 412 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKL-------QQLQTKLKKCQKELKEER-------EENKKLIKNQ 412 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH-------HHHHHHHhhH
Confidence 566666666677777766655544443 345555555 234455566677777777 5677776655
No 198
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=57.83 E-value=4e+02 Score=31.87 Aligned_cols=42 Identities=24% Similarity=0.434 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHH
Q 005373 224 MVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKA 265 (699)
Q Consensus 224 lv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~ 265 (699)
-+..|+.+|+..+.+|.++..+....+.++..+...+.+.+.
T Consensus 329 el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~ 370 (594)
T PF05667_consen 329 ELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEA 370 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777777766666555555554444
No 199
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=57.50 E-value=2.4e+02 Score=29.23 Aligned_cols=101 Identities=22% Similarity=0.265 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 005373 230 AEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELAD 309 (699)
Q Consensus 230 ~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae 309 (699)
..|+.+...+++..+..+..+++++.+-. |...+.+-++.+..|++.=+.-.++++..-..+-.|+++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~sQ~~id~~~~------------e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~ 88 (251)
T PF11932_consen 21 ATLDQAQQVQQQWVQAAQQSQKRIDQWDD------------EKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELAS 88 (251)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666655555555554433 344566666777777776666666666666666666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 005373 310 AKVSAKRYMQDYEKERKERELIEEVCDELAKEIGED 345 (699)
Q Consensus 310 ~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~ed 345 (699)
.+..+.... +-++.-.-+|.+++++|-.-|..|
T Consensus 89 L~~qi~~~~---~~~~~l~p~m~~m~~~L~~~v~~d 121 (251)
T PF11932_consen 89 LEQQIEQIE---ETRQELVPLMEQMIDELEQFVELD 121 (251)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 543333321 112233456677777776666543
No 200
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=57.45 E-value=2.9e+02 Score=31.97 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=22.3
Q ss_pred hhhhHHHHHHHHHhHHHhhhhhhhhhhhhhHHH
Q 005373 363 VDDERKMLQMAEVWREERVQMKLVDAKVAVEQK 395 (699)
Q Consensus 363 ~EeER~MLqmAEvWREERVQMKL~dAk~~leeK 395 (699)
+|.+-.|+-+-|.-|+=|.|-.|++|..+|.-|
T Consensus 107 ~e~~n~~~~l~~~~~~~r~~e~la~~~~~l~~~ 139 (459)
T KOG0288|consen 107 AEFENAELALREMRRKMRIAERLAEALKDLGLK 139 (459)
T ss_pred hhhccchhhHHHHHHHHHHHHHHHHHhhhcchh
Confidence 466777777777777777777777766655444
No 201
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=56.57 E-value=3.1e+02 Score=30.25 Aligned_cols=64 Identities=16% Similarity=0.320 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005373 223 SMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERK 291 (699)
Q Consensus 223 Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk 291 (699)
--++++..+-+...+.|+++...-++-+.+-+-+..+|.+=|. +++.+.+-++.+..+...-+.
T Consensus 34 ~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~-----kR~ein~kl~eL~~~~~~l~e 97 (294)
T COG1340 34 KEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKE-----KRDEINAKLQELRKEYRELKE 97 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777888888888887777777666666666666554 345566666666655554443
No 202
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=55.63 E-value=2.3e+02 Score=28.40 Aligned_cols=52 Identities=23% Similarity=0.211 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHH
Q 005373 222 VSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHE 273 (699)
Q Consensus 222 ~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~e 273 (699)
|++|=..-..|+-+.++-++...|-...+.+.+.|..+...+|...+..|.+
T Consensus 28 mP~VV~vLE~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~ 79 (158)
T PF09744_consen 28 MPKVVRVLELLESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEE 79 (158)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3433333366777777766766666677777778888877777776665543
No 203
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=55.38 E-value=73 Score=29.68 Aligned_cols=63 Identities=27% Similarity=0.444 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 005373 231 EVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADA 310 (699)
Q Consensus 231 EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~ 310 (699)
+|...+.+..++++++.....+|+.|-..|-+|- ..+| ..+|+.|-.+|.-|..|.++|.|+
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEA-----------N~MV-------a~ar~e~~~~e~k~~~le~~l~e~ 63 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTASLFEEA-----------NKMV-------ADARRERAALEEKNEQLEKQLKEK 63 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH-------HHHHHHHHHHHHHHHHHHHCTTHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777788888899999999999999999887772 2222 678888888888888888888664
Q ss_pred H
Q 005373 311 K 311 (699)
Q Consensus 311 K 311 (699)
.
T Consensus 64 ~ 64 (100)
T PF06428_consen 64 E 64 (100)
T ss_dssp C
T ss_pred H
Confidence 4
No 204
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=55.28 E-value=79 Score=30.07 Aligned_cols=68 Identities=24% Similarity=0.395 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 269 SREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDE 337 (699)
Q Consensus 269 skE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdE 337 (699)
.++.+.+.+.+......++...+..+.+-.|-.|..+||+++|....+...+|-.-.+.= .+--.|--
T Consensus 6 ~~~~~~~~~~~~~~~~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~Lr~dl~aG~~RL-~v~a~C~~ 73 (125)
T PF03245_consen 6 KRQRDQAQAALEAANAAIEDMQQRQQALAALDAKYTKELADAKAEIDRLRADLAAGNKRL-RVKATCPA 73 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHcCCceE-EEeccCCC
Confidence 345566777788888889999999999999999999999999999999988887774321 14445655
No 205
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=55.28 E-value=16 Score=43.58 Aligned_cols=85 Identities=28% Similarity=0.412 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhh-------hhhHHHHHHHH--------HhHHH-hhhhhhhhhhhh-
Q 005373 329 ELIEEVCDELAKEIGEDKAEVEALKRESMKLREEV-------DDERKMLQMAE--------VWREE-RVQMKLVDAKVA- 391 (699)
Q Consensus 329 ellE~vCdELAkeI~edkaEVe~LKres~k~reE~-------EeER~MLqmAE--------vWREE-RVQMKL~dAk~~- 391 (699)
++.|+.-+.+++.|.+.+||||.||.++.|..+.+ +-|+++=-.++ .||=| |+-|--.|--..
T Consensus 360 ~~aeeF~kRV~~~ia~~~AEIekmK~~Hak~m~k~k~~s~lk~AE~~LR~a~~~p~~~G~E~WRlEGrl~~~~ee~~~~~ 439 (669)
T PF08549_consen 360 GKAEEFRKRVAKKIADMNAEIEKMKARHAKRMAKFKRNSLLKDAEKELRDAVEDPSETGPEIWRLEGRLDTPDEEDESPV 439 (669)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCCccccCccceeecccccCCccCCCCcc
Confidence 34556666677778899999999999998876554 33444433333 78755 333221111111
Q ss_pred --hHHHh-HHHHHHHHHHHHHHhhc
Q 005373 392 --VEQKY-SQMNKLVAELEAFLSSR 413 (699)
Q Consensus 392 --leeK~-s~ldkL~~eLE~FL~sk 413 (699)
.+.|. .-||....++|+=|..+
T Consensus 440 ~~~~~k~k~~VDDIV~eVE~slGrk 464 (669)
T PF08549_consen 440 EQSENKPKYKVDDIVAEVEKSLGRK 464 (669)
T ss_pred cccCccccccHHHHHHHHHHHhCCe
Confidence 11111 24899999999999876
No 206
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=55.08 E-value=4.9e+02 Score=33.44 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 307 LADAKVSAKRYMQDYEKERKERELIEE 333 (699)
Q Consensus 307 Lae~Kss~~~a~kelE~ERKaRellE~ 333 (699)
+..++..+.+--.++++.++.-..++.
T Consensus 312 i~~~kk~~~~~~~~ie~~ek~l~av~~ 338 (1141)
T KOG0018|consen 312 IETAKKDYRALKETIERLEKELKAVEG 338 (1141)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443333
No 207
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=54.98 E-value=2.9e+02 Score=29.49 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 005373 224 MVAALEAEVEQARTRIQELETERRSSKKKL 253 (699)
Q Consensus 224 lv~aLk~EL~~Ar~rI~eL~~E~~s~k~ei 253 (699)
.+.++++|+..++..+-.++.+-...++++
T Consensus 32 ~l~k~~~e~e~~~~~~~~~~~e~e~le~qv 61 (239)
T COG1579 32 ALKKAKAELEALNKALEALEIELEDLENQV 61 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666555555544444443
No 208
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=54.97 E-value=2.6e+02 Score=28.93 Aligned_cols=33 Identities=18% Similarity=0.366 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhH
Q 005373 325 RKERELIEEVCDELAKEIGEDKAEVEALKRESM 357 (699)
Q Consensus 325 RKaRellE~vCdELAkeI~edkaEVe~LKres~ 357 (699)
.+..+-++.-++.+.+.|..-+.++..|.++..
T Consensus 62 ~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~ 94 (251)
T PF11932_consen 62 EREIENLEVYNEQLERQVASQEQELASLEQQIE 94 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666666666677777665544
No 209
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=54.90 E-value=1.4e+02 Score=26.15 Aligned_cols=67 Identities=19% Similarity=0.363 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 005373 236 RTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAK 315 (699)
Q Consensus 236 r~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~ 315 (699)
|.+|+++..+-...-+++..++++|..- ...+-.-+..-....||.+++..+-..|.
T Consensus 32 R~~i~~~~~~~~~l~k~~~~~l~~l~~~-----------------------~~~~~~~~~~k~~~~KL~~df~~~l~~fq 88 (102)
T PF14523_consen 32 REKIHQLIQKTNQLIKEISELLKKLNSL-----------------------SSDRSNDRQQKLQREKLSRDFKEALQEFQ 88 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS-----------------------H----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------hhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555544332 22333444455667789999888888888
Q ss_pred HHHHHHHHHH
Q 005373 316 RYMQDYEKER 325 (699)
Q Consensus 316 ~a~kelE~ER 325 (699)
++.+.|.+-.
T Consensus 89 ~~q~~~~~~~ 98 (102)
T PF14523_consen 89 KAQRRYAEKE 98 (102)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8777765433
No 210
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=54.78 E-value=2e+02 Score=27.52 Aligned_cols=71 Identities=23% Similarity=0.396 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 005373 223 SMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEI 298 (699)
Q Consensus 223 Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ 298 (699)
.=+.+|..+|+..-.-+.+|.+++.. +...+..|-.+..+.-.+- .-+.+-|.++...|+.|+-.+-.++.
T Consensus 16 n~La~Le~slE~~K~S~~eL~kqkd~----L~~~l~~L~~q~~s~~qr~-~eLqaki~ea~~~le~eK~ak~~l~~ 86 (107)
T PF09304_consen 16 NRLASLERSLEDEKTSQGELAKQKDQ----LRNALQSLQAQNASRNQRI-AELQAKIDEARRNLEDEKQAKLELES 86 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHH----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788999999999999999775544 6666777777766554433 33677777777777776655534443
No 211
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=54.65 E-value=5.4e+02 Score=32.43 Aligned_cols=11 Identities=9% Similarity=-0.055 Sum_probs=6.8
Q ss_pred ccccCCccccc
Q 005373 619 GRLSNGSLASL 629 (699)
Q Consensus 619 ~r~sn~~~~sp 629 (699)
.|+++.-++.|
T Consensus 1021 ~~i~~qi~V~k 1031 (1047)
T PRK10246 1021 ERIPVQIKVKK 1031 (1047)
T ss_pred HhccceEEEEE
Confidence 45666666666
No 212
>PRK14143 heat shock protein GrpE; Provisional
Probab=54.21 E-value=2.6e+02 Score=29.70 Aligned_cols=69 Identities=20% Similarity=0.315 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLV 304 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~ 304 (699)
+..|+.+|...+..+.+|...-.....+++.|.|+...|+...+ .-.+.+++
T Consensus 69 ~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~----------------------------~~a~~~~~ 120 (238)
T PRK14143 69 LAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLR----------------------------LQLKCNTL 120 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHH
Confidence 45666677666666666654444444555555555444433222 23456677
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005373 305 NELADAKVSAKRYMQDY 321 (699)
Q Consensus 305 ~ELae~Kss~~~a~kel 321 (699)
++|..+--.|.+|++-+
T Consensus 121 ~~lLpV~DnLerAl~~~ 137 (238)
T PRK14143 121 SEILPVVDNFERARQQL 137 (238)
T ss_pred HHHHHHHhHHHHHHhcc
Confidence 77777777776666543
No 213
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=53.99 E-value=2.8e+02 Score=28.98 Aligned_cols=58 Identities=22% Similarity=0.283 Sum_probs=31.6
Q ss_pred hHHHHHHHHHhHHHhhhhhhhhhhhhhHHHhHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 005373 366 ERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSSRSINPDIQEMKEAEML 428 (699)
Q Consensus 366 ER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~eLE~FL~sk~~~~d~~~~r~ae~~ 428 (699)
++.+++-=+.|+.|=|+ +.-|+|-.|+.- -+++-.=|+.||.....+. ..++.+|...
T Consensus 91 ~~~l~~~L~~F~kedi~-~~Ke~kK~FdK~---se~~~~al~k~~~ls~k~K-~~~~eEA~~~ 148 (207)
T cd07636 91 SEVLITPLEKFRKEQIG-AAKEAKKKYDKE---TEKYCAVLEKHLNLSSKKK-ESQLHEADSQ 148 (207)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHhhhHhhh---hhHHHHHHHHHhcCcccCC-chHHHHHHHH
Confidence 34455555667777776 566777766653 3444555677776431111 1255555433
No 214
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=53.95 E-value=3.8e+02 Score=30.45 Aligned_cols=73 Identities=23% Similarity=0.373 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhccHHHHHHHHHh
Q 005373 283 KAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEK-------ERKERELIEEVCDELAKEIGEDKAEVEALKRE 355 (699)
Q Consensus 283 k~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~-------ERKaRellE~vCdELAkeI~edkaEVe~LKre 355 (699)
++-++.-..--+++.+-|.||.++|-.+..-|.+.--+... -+....-++---|++.++++|.+.|...|-||
T Consensus 91 ~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrE 170 (401)
T PF06785_consen 91 RESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRE 170 (401)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHH
Confidence 33344444455678889999999999998888776332211 11112223333455555555555555555444
No 215
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=53.79 E-value=4.6e+02 Score=31.36 Aligned_cols=126 Identities=21% Similarity=0.287 Sum_probs=83.7
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhH---------HHHHHHHHHHHHHHH
Q 005373 216 DQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSRE---------HEKIRAFIDDLKAEI 286 (699)
Q Consensus 216 eq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE---------~eki~a~i~slk~EL 286 (699)
+|-..+-++|..| |||.|..-+..+ +.+|+.|-..|.-|-.|.+.=+ -+|++..-.-+++|.
T Consensus 262 ~~l~~~~~~l~~L--eld~aeeel~~I-------~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Ei 332 (570)
T COG4477 262 EQLVENSELLTQL--ELDEAEEELGLI-------QEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEI 332 (570)
T ss_pred HHHHHHHhHHHHh--hhhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHH
Confidence 3333344444443 667776655543 3468888888888877776543 356666667777777
Q ss_pred HHHHHhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHH
Q 005373 287 SRERKNRQRIEI---VNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVE 350 (699)
Q Consensus 287 e~ERk~Rkr~E~---ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe 350 (699)
+.=++.=+=.|. .-+++.+||.+.++.+...+..++....+=-.+.+--.++-+.+.+-+.+-+
T Consensus 333 e~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~ 399 (570)
T COG4477 333 ERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQE 399 (570)
T ss_pred HHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHH
Confidence 665554443332 3578999999999999999999998888877777777777666655444333
No 216
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=53.77 E-value=6e+02 Score=32.68 Aligned_cols=64 Identities=22% Similarity=0.264 Sum_probs=40.6
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHH
Q 005373 296 IEIVNSKL---VNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKL 359 (699)
Q Consensus 296 ~E~ln~KL---~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~ 359 (699)
.+.+|..| ..||+-.-+.+.....+|...-..=+++-+=|.+|-..++.++.|-+-|-.+..++
T Consensus 490 iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~L 556 (1195)
T KOG4643|consen 490 IKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSL 556 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 44444444 23555555556666666666666677777788888888888887766665554443
No 217
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=53.55 E-value=55 Score=37.86 Aligned_cols=55 Identities=22% Similarity=0.402 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 005373 229 EAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVN 305 (699)
Q Consensus 229 k~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ 305 (699)
++-|+.-|+||.||..=-...+ ++ ..|| |.-|+.+|+.|+++|-++|.--.||.+
T Consensus 568 k~s~delr~qi~el~~ive~lk-------~~--------~~ke-------l~kl~~dleeek~mr~~lemei~~lkk 622 (627)
T KOG4348|consen 568 KNSLDELRAQIIELLCIVEALK-------KD--------HGKE-------LEKLRKDLEEEKTMRSNLEMEIEKLKK 622 (627)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH-------HH--------HHHH-------HHHHHHHHHHHHHHHhhhHhhHHHHHH
Confidence 4557777999999876332222 21 1122 333566788888888877765555543
No 218
>PRK09039 hypothetical protein; Validated
Probab=53.55 E-value=3.4e+02 Score=29.87 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 005373 273 EKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNEL 307 (699)
Q Consensus 273 eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~EL 307 (699)
+.+.+.|..+-+-|.-|+.....++..=..|-.+|
T Consensus 56 ~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l 90 (343)
T PRK09039 56 DRLNSQIAELADLLSLERQGNQDLQDSVANLRASL 90 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333344466667777665555444433333333
No 219
>PRK00106 hypothetical protein; Provisional
Probab=53.17 E-value=4.5e+02 Score=31.10 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=13.6
Q ss_pred HhhhhhhhhhhhhhHHHhHHHHHHHHHHHHHHhh
Q 005373 379 ERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSS 412 (699)
Q Consensus 379 ERVQMKL~dAk~~leeK~s~ldkL~~eLE~FL~s 412 (699)
+.-.|--.+||..|-++. -+.+..|.-.+++.
T Consensus 161 ~~a~lt~~eak~~l~~~~--~~~~~~~~~~~i~~ 192 (535)
T PRK00106 161 RVAALSQAEAREIILAET--ENKLTHEIATRIRE 192 (535)
T ss_pred HHhCCCHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 333445555555443322 23344444444443
No 220
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=53.07 E-value=5.2e+02 Score=31.74 Aligned_cols=127 Identities=24% Similarity=0.307 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHH--HHHHHHH---hhHHHHHHhhhhHHH--HHHHHHHHHHHHHHHHHHhhhhHHHH
Q 005373 227 ALEAEVEQARTRIQELETERRSSKK--KLEHFLR---KVSEEKAAWRSREHE--KIRAFIDDLKAEISRERKNRQRIEIV 299 (699)
Q Consensus 227 aLk~EL~~Ar~rI~eL~~E~~s~k~--eie~l~K---qlaEEK~awKskE~e--ki~a~i~slk~ELe~ERk~Rkr~E~l 299 (699)
.+++|++..+.++..+.++.++... ..+..++ ++++.+..-+.++.. -+.+-++.+-...+ .++..
T Consensus 397 ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~e-------d~Qeq 469 (698)
T KOG0978|consen 397 KARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFE-------DMQEQ 469 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 4566777777777777666665554 4555555 444444333322221 11222233333333 37788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHH
Q 005373 300 NSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLR 360 (699)
Q Consensus 300 n~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~r 360 (699)
|.||.-||.+.--.--++|.+..+-...-.++.+-=+.|...|-.+++-+..+.....++.
T Consensus 470 n~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~le 530 (698)
T KOG0978|consen 470 NQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLE 530 (698)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888777788777777777777777777777777777766666655555543
No 221
>PRK14151 heat shock protein GrpE; Provisional
Probab=52.98 E-value=2.6e+02 Score=28.32 Aligned_cols=46 Identities=11% Similarity=0.179 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHh
Q 005373 222 VSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAW 267 (699)
Q Consensus 222 ~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~aw 267 (699)
.+.+..|+.+++..+.++.+|...-.....+++.+.|+...|+...
T Consensus 19 ~~~~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~ 64 (176)
T PRK14151 19 AAAGDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKA 64 (176)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777776555555566666666666555433
No 222
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=52.34 E-value=2.9e+02 Score=28.67 Aligned_cols=101 Identities=20% Similarity=0.250 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--cHHHHHHHHHhh
Q 005373 279 IDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGE--DKAEVEALKRES 356 (699)
Q Consensus 279 i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~e--dkaEVe~LKres 356 (699)
|..+..+++..| |....-+.|+.+.+.++-.++. |++..-+..|+|+=+--.. ++.++..+|.
T Consensus 95 L~~l~~~~e~~R---K~~ke~~~k~~k~~~~a~~~le----------KAK~~Y~~~c~e~Ekar~~~~~~~~~~~~k~-- 159 (234)
T cd07652 95 LSSLAKTVEKSR---KSIKETGKRAEKKVQDAEAAAE----------KAKARYDSLADDLERVKTGDPGKKLKFGLKG-- 159 (234)
T ss_pred HHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhccCCCccccccccc--
Confidence 334445555444 4466677788888777766664 4455556677776322212 2111122221
Q ss_pred HHHHhhhhhhHHHHHHHHHhHHHhhhhhhhhhhhhhHHHhHHHHHHHHHHHH
Q 005373 357 MKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEA 408 (699)
Q Consensus 357 ~k~reE~EeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~eLE~ 408 (699)
.+-... -||..|-|..+|+.+.-.+....+.++.|+..
T Consensus 160 ~~~~~~--------------~Ee~~~~K~~~A~~~Y~~~v~~~n~~q~e~~~ 197 (234)
T cd07652 160 NKSAAQ--------------HEDELLRKVQAADQDYASKVNAAQALRQELLS 197 (234)
T ss_pred hhhHHH--------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 23455567777888888887777877777654
No 223
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=52.13 E-value=4.3e+02 Score=30.53 Aligned_cols=36 Identities=22% Similarity=0.305 Sum_probs=26.1
Q ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 005373 254 EHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRE 289 (699)
Q Consensus 254 e~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~E 289 (699)
+.|-.++.+.+.+-+...-.-+.+.+..++.-|+.|
T Consensus 158 ~sL~ekl~lld~al~~~~~~~~~~~~~fl~rtl~~e 193 (511)
T PF09787_consen 158 RSLQEKLSLLDEALKREDGNAITAVVEFLKRTLKKE 193 (511)
T ss_pred hhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 677777777777777777777777777777766665
No 224
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=52.12 E-value=2.6e+02 Score=27.96 Aligned_cols=87 Identities=11% Similarity=0.133 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLV 304 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~ 304 (699)
++-+..=|+.=+..|...+.+-...+.+.+.++.++.+....+|..-++.+..+......+.+.. .+..+..+.
T Consensus 53 ~~PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~------~~~A~~e~~ 126 (181)
T PRK13454 53 LPRIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAETRAEIQAELDVA------IAKADAEIA 126 (181)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH
Confidence 34445556777778888888888888888888888888877777665555555544443333322 233344555
Q ss_pred HHHHHHHHHHHHH
Q 005373 305 NELADAKVSAKRY 317 (699)
Q Consensus 305 ~ELae~Kss~~~a 317 (699)
+.+++++.-+.+.
T Consensus 127 ~~~aea~~~I~~~ 139 (181)
T PRK13454 127 AKAAESEKRIAEI 139 (181)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555433333
No 225
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=51.88 E-value=4.7e+02 Score=30.91 Aligned_cols=15 Identities=27% Similarity=0.649 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHhhhH
Q 005373 236 RTRIQELETERRSSK 250 (699)
Q Consensus 236 r~rI~eL~~E~~s~k 250 (699)
+..|+||+.|++..+
T Consensus 90 ~~Kl~eLE~e~k~d~ 104 (508)
T PF00901_consen 90 QRKLKELEDEQKEDE 104 (508)
T ss_pred HHHHHHHHHHHhhHH
Confidence 456777777766554
No 226
>PRK14139 heat shock protein GrpE; Provisional
Probab=51.57 E-value=1.1e+02 Score=31.19 Aligned_cols=66 Identities=24% Similarity=0.276 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLV 304 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~ 304 (699)
+..|+.+|...+.++.+|........-+++.+.|.+..|+...+ .-...+++
T Consensus 34 ~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~----------------------------~~a~~~~~ 85 (185)
T PRK14139 34 APALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAH----------------------------KFAIESFA 85 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHH
Confidence 45666777777777777766555556666666665555544222 23455677
Q ss_pred HHHHHHHHHHHHHH
Q 005373 305 NELADAKVSAKRYM 318 (699)
Q Consensus 305 ~ELae~Kss~~~a~ 318 (699)
++|..+--.|.+|+
T Consensus 86 ~~LLpv~DnLerAl 99 (185)
T PRK14139 86 ESLLPVKDSLEAAL 99 (185)
T ss_pred HHHhhHHhHHHHHH
Confidence 77777777777665
No 227
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=50.93 E-value=5.7e+02 Score=31.66 Aligned_cols=50 Identities=14% Similarity=0.187 Sum_probs=21.9
Q ss_pred HHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 005373 240 QELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRE 289 (699)
Q Consensus 240 ~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~E 289 (699)
+-+.+|+...++++..|-+-++.--..=-=+|.+-|-+.|++==++|..+
T Consensus 419 qa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ 468 (961)
T KOG4673|consen 419 QALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKK 468 (961)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33444555555554444443332221111223555555555544455444
No 228
>PF13514 AAA_27: AAA domain
Probab=50.26 E-value=6.3e+02 Score=31.90 Aligned_cols=72 Identities=15% Similarity=0.324 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 005373 226 AALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKL 303 (699)
Q Consensus 226 ~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL 303 (699)
..+..++...+.+|.++.++......++..|...+..+-. ... ....+..|+..|+..|...++.+.+...+
T Consensus 739 ~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~---~~~---~~~~~~~L~~~l~~a~~~~~~~~~l~~~~ 810 (1111)
T PF13514_consen 739 REALAEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLP---EDP---AEEALEALRARLEEAREAQEERERLQEQL 810 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc---cCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666677777777777777777777766654211 111 11566666666776666655555444433
No 229
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=49.44 E-value=2.4e+02 Score=27.46 Aligned_cols=44 Identities=25% Similarity=0.379 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHH
Q 005373 222 VSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKA 265 (699)
Q Consensus 222 ~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~ 265 (699)
..-+..|..|+..-+.++.+|..+....+.++..|.+.++.+-+
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el 114 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEEL 114 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 44588899999999999999999999999999999999887755
No 230
>PF15294 Leu_zip: Leucine zipper
Probab=49.30 E-value=3.9e+02 Score=29.26 Aligned_cols=82 Identities=27% Similarity=0.435 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHH---HH
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIV---NS 301 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~l---n~ 301 (699)
|..|+.|.+..+.|++-|+...-.. + +|..++.+.|.+++.+.-+-+ .+..+=.- =.
T Consensus 134 i~rLq~EN~kLk~rl~~le~~at~~-------l------------~Ek~kl~~~L~~lq~~~~~~~-~k~~~~~~~q~l~ 193 (278)
T PF15294_consen 134 IDRLQEENEKLKERLKSLEKQATSA-------L------------DEKSKLEAQLKELQDEQGDQK-GKKDLSFKAQDLS 193 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------H------------HHHHHHHHHHHHHHHHHHhhh-ccccccccccchh
Confidence 6778888888888777776533221 1 255677777777777433322 22111000 01
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 302 KLVNELADAKVSAKRYMQDYEKERK 326 (699)
Q Consensus 302 KL~~ELae~Kss~~~a~kelE~ERK 326 (699)
-|-.-++.+|.-|.+++.+.+..-+
T Consensus 194 dLE~k~a~lK~e~ek~~~d~~~~~k 218 (278)
T PF15294_consen 194 DLENKMAALKSELEKALQDKESQQK 218 (278)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2444556667777777777666443
No 231
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=49.05 E-value=2.1e+02 Score=33.38 Aligned_cols=59 Identities=22% Similarity=0.365 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERK 291 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk 291 (699)
|..|-.++.+-|.++.+|+++.+..++|-+.|.++ ...-..+|..+|+..+.||..|+.
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r--------~~~id~~i~~av~~~~~~~~~~~~ 119 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKR--------EQSIDQQIQQAVQSETQELTKEIE 119 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhhHHHHHHHHHHhhhHHHHHHHH
Confidence 45566677777777778887777777777766543 223456788888887777776653
No 232
>PRK14146 heat shock protein GrpE; Provisional
Probab=49.02 E-value=3.1e+02 Score=28.68 Aligned_cols=64 Identities=14% Similarity=0.261 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 005373 224 MVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEIS 287 (699)
Q Consensus 224 lv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe 287 (699)
-+..|+.+|+.++.++.+|...-.....+++.+.|+...|+...+.--.+++-..|-.+-+-|+
T Consensus 55 ~~~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~e~~~~~lLpv~Dnle 118 (215)
T PRK14146 55 TETSLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEAVKSLVSGFLNPIDNLE 118 (215)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHH
Confidence 3678888999999999998877777788888888888888776666555555555545544444
No 233
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=48.65 E-value=4e+02 Score=29.22 Aligned_cols=51 Identities=24% Similarity=0.213 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 275 IRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKER 328 (699)
Q Consensus 275 i~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaR 328 (699)
++.-.+.|+.|+... ++..+-++.-=..||..+|..+.....+++.-++.-
T Consensus 177 l~~~~~~L~~e~~~L---~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l 227 (312)
T smart00787 177 LRDRKDALEEELRQL---KQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKL 227 (312)
T ss_pred HHHHHHHHHHHHHHH---HHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555443 333333333335566666666666666666655543
No 234
>PF15294 Leu_zip: Leucine zipper
Probab=48.61 E-value=4e+02 Score=29.19 Aligned_cols=119 Identities=18% Similarity=0.237 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhh
Q 005373 277 AFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRES 356 (699)
Q Consensus 277 a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres 356 (699)
..|+.|++|.+ ++|-|+-+++..- -...+-|+.+...++++..+.-.-.....++. =+..|.+.+..|..||-+.
T Consensus 132 kEi~rLq~EN~---kLk~rl~~le~~a-t~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~-~~q~l~dLE~k~a~lK~e~ 206 (278)
T PF15294_consen 132 KEIDRLQEENE---KLKERLKSLEKQA-TSALDEKSKLEAQLKELQDEQGDQKGKKDLSF-KAQDLSDLENKMAALKSEL 206 (278)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhccccccc-cccchhhHHHHHHHHHHHH
Confidence 33444444433 4455555554332 33334455566666666552222111111111 2345666777777776554
Q ss_pred HHHHhhhhhhHHHHHHHHHhHHHhhhhhhhhhhhhhHHHhHHHHHHHHHHHHHHh
Q 005373 357 MKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLS 411 (699)
Q Consensus 357 ~k~reE~EeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~eLE~FL~ 411 (699)
.+.....+ + .-+=++-.|.-++..|-..-..|.....|||..++
T Consensus 207 ek~~~d~~---------~--~~k~L~e~L~~~KhelL~~QeqL~~aekeLekKfq 250 (278)
T PF15294_consen 207 EKALQDKE---------S--QQKALEETLQSCKHELLRVQEQLSLAEKELEKKFQ 250 (278)
T ss_pred HHHHHHHH---------H--HHHHHHHHHHHHHHHHHhcchhhhcchhhHHHHhC
Confidence 44322221 1 11122334444555555555555555555555444
No 235
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=48.54 E-value=1.3e+02 Score=26.51 Aligned_cols=61 Identities=26% Similarity=0.478 Sum_probs=43.1
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHH
Q 005373 214 HLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDL 282 (699)
Q Consensus 214 leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~sl 282 (699)
|+.+-...|--|..|++|++.-+.....|..+...-+.+ ..++.+|+.+|+ ++|++.|.-|
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~e----n~~L~~e~~~~~----~rl~~LL~kl 69 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEE----NEQLKQERNAWQ----ERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHH----HHHHHHHHhh
Confidence 444445567778999999999999888888766655555 556668888885 4566665544
No 236
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=48.45 E-value=5e+02 Score=30.23 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 305 NELADAKVSAKRYMQDYEKERKERELIEEVCD 336 (699)
Q Consensus 305 ~ELae~Kss~~~a~kelE~ERKaRellE~vCd 336 (699)
+||.+-+..|.++.--|+.+++.+.+-|.+..
T Consensus 100 r~~~~q~~e~~n~~~~l~~~~~~~r~~e~la~ 131 (459)
T KOG0288|consen 100 RELREQKAEFENAELALREMRRKMRIAERLAE 131 (459)
T ss_pred HHHHHhhhhhccchhhHHHHHHHHHHHHHHHH
Confidence 56777777788877777777777777766655
No 237
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=48.23 E-value=2.1e+02 Score=25.92 Aligned_cols=48 Identities=15% Similarity=0.300 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHH
Q 005373 302 KLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEV 349 (699)
Q Consensus 302 KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEV 349 (699)
.|..|+..+..--++.-++|.+-...-.-+|.+|.|+.+.+..--..|
T Consensus 36 ~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~I 83 (89)
T PF13747_consen 36 ELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETI 83 (89)
T ss_pred hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444445555555556778999999988876543333
No 238
>PRK14158 heat shock protein GrpE; Provisional
Probab=47.89 E-value=1.7e+02 Score=30.25 Aligned_cols=69 Identities=17% Similarity=0.217 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 005373 223 SMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSK 302 (699)
Q Consensus 223 Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~K 302 (699)
.-+..|+.+|.....++.+|...-....-+++.+.|+...|+...+ .....+
T Consensus 40 ~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~----------------------------~~a~~~ 91 (194)
T PRK14158 40 DRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELL----------------------------KYGNES 91 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHH
Confidence 3456777777777777777765555555666666665555544222 124567
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005373 303 LVNELADAKVSAKRYMQ 319 (699)
Q Consensus 303 L~~ELae~Kss~~~a~k 319 (699)
++++|..+--.|.+|+.
T Consensus 92 ~~~~lLpV~DnLerAl~ 108 (194)
T PRK14158 92 LILEILPAVDNMERALD 108 (194)
T ss_pred HHHHHHhHHhHHHHHHh
Confidence 77777777766666654
No 239
>PRK14145 heat shock protein GrpE; Provisional
Probab=47.48 E-value=3.5e+02 Score=28.12 Aligned_cols=65 Identities=14% Similarity=0.195 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 005373 223 SMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEIS 287 (699)
Q Consensus 223 Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe 287 (699)
.-+..|+.+|+.++.++.+|...-.....+++.+.|....|+...+..--+++-..|-.+.+.|+
T Consensus 45 ~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LLpV~DnLe 109 (196)
T PRK14145 45 DEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELLPVMDNFE 109 (196)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHH
Confidence 45788999999999999999988888889999999999999888777777777666666666664
No 240
>PRK14156 heat shock protein GrpE; Provisional
Probab=47.45 E-value=3.1e+02 Score=27.99 Aligned_cols=65 Identities=17% Similarity=0.280 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 005373 227 ALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNE 306 (699)
Q Consensus 227 aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~E 306 (699)
+|..+|+..+.++.+|...-.....+++.+.|+...|+...+. -.+.+++++
T Consensus 31 ~~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~----------------------------~a~~~~~~~ 82 (177)
T PRK14156 31 PEKSELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQR----------------------------YRSQDLAKA 82 (177)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHH
Confidence 5566677777777777655555555666666555555443322 244566666
Q ss_pred HHHHHHHHHHHHH
Q 005373 307 LADAKVSAKRYMQ 319 (699)
Q Consensus 307 Lae~Kss~~~a~k 319 (699)
|..+--.|.+|+.
T Consensus 83 LLpVlDnLerAl~ 95 (177)
T PRK14156 83 ILPSLDNLERALA 95 (177)
T ss_pred HhhHHhHHHHHHh
Confidence 6666666666654
No 241
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=47.28 E-value=4e+02 Score=30.77 Aligned_cols=27 Identities=33% Similarity=0.582 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 005373 230 AEVEQARTRIQELETERRSSKKKLEHF 256 (699)
Q Consensus 230 ~EL~~Ar~rI~eL~~E~~s~k~eie~l 256 (699)
.|+..-..++.++.+|.+..+.+++.+
T Consensus 109 ~e~a~lk~~l~e~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 109 SELAVLKIRLQELDQELRRLRRQLEEL 135 (511)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444455444
No 242
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=46.81 E-value=2.3e+02 Score=25.90 Aligned_cols=109 Identities=19% Similarity=0.264 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 005373 228 LEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNEL 307 (699)
Q Consensus 228 Lk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~EL 307 (699)
+..+|+.-+..+..++..-.....+++.--.+|.+.......==.+ ..+-........+.|++.+...+.-=.+|..+|
T Consensus 12 ~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flke-n~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l 90 (126)
T PF13863_consen 12 VQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKE-NEAKRERAEKRAEEEKKKKEEKEAEIKKLKAEL 90 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555444444444444444433321110000 011111123456788888888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 308 ADAKVSAKRYMQDYEKERKERELIEEVCDE 337 (699)
Q Consensus 308 ae~Kss~~~a~kelE~ERKaRellE~vCdE 337 (699)
..+++-..+.-..++.=.+=...|+.|.+.
T Consensus 91 ~~l~~~~~k~e~~l~~~~~Y~~fL~~v~~~ 120 (126)
T PF13863_consen 91 EELKSEISKLEEKLEEYKKYEEFLEKVVPK 120 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999998888888888888888888877653
No 243
>PRK12704 phosphodiesterase; Provisional
Probab=46.80 E-value=5.4e+02 Score=30.13 Aligned_cols=13 Identities=31% Similarity=0.475 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q 005373 277 AFIDDLKAEISRE 289 (699)
Q Consensus 277 a~i~slk~ELe~E 289 (699)
.-+...+.|++.|
T Consensus 64 eE~~~~R~Ele~e 76 (520)
T PRK12704 64 EEIHKLRNEFEKE 76 (520)
T ss_pred HHHHHHHHHHHHH
Confidence 4445555555544
No 244
>PRK10884 SH3 domain-containing protein; Provisional
Probab=46.61 E-value=3e+02 Score=28.50 Aligned_cols=29 Identities=21% Similarity=0.189 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 296 IEIVNSKLVNELADAKVSAKRYMQDYEKE 324 (699)
Q Consensus 296 ~E~ln~KL~~ELae~Kss~~~a~kelE~E 324 (699)
++.-|.+|..||..++.-+..+-.+++..
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777777766655544444433
No 245
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=46.57 E-value=2.2e+02 Score=27.39 Aligned_cols=25 Identities=48% Similarity=0.555 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 005373 221 AVSMVAALEAEVEQARTRIQELETE 245 (699)
Q Consensus 221 ~~Slv~aLk~EL~~Ar~rI~eL~~E 245 (699)
|-..|-||--||++++.+|.+|.++
T Consensus 65 nP~tvLALLDElE~~~~~i~~~~~~ 89 (139)
T PF13935_consen 65 NPATVLALLDELERAQQRIAELEQE 89 (139)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999886
No 246
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=46.44 E-value=2e+02 Score=29.61 Aligned_cols=69 Identities=26% Similarity=0.459 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Q 005373 270 REHEKIRAFIDDLKAEISRERKNRQR--------IEIVNSKLVNELADAKVSAKRYMQDYEKERKE------RELIEEVC 335 (699)
Q Consensus 270 kE~eki~a~i~slk~ELe~ERk~Rkr--------~E~ln~KL~~ELae~Kss~~~a~kelE~ERKa------RellE~vC 335 (699)
++--+.+|.|..++..|++.||.=++ .|.-=..|...+.++-..+..-++++|..+|. +.+++++|
T Consensus 42 k~aKk~rA~LNKl~k~id~~RK~ikk~~~~P~~~Fe~~~K~l~~~i~~~~~~I~~~ik~~Ee~~k~~k~~~i~~~~~~~~ 121 (215)
T PF07083_consen 42 KDAKKDRAELNKLKKAIDDKRKEIKKEYSKPIKEFEAKIKELIAPIDEASDKIDEQIKEFEEKEKEEKREKIKEYFEEMA 121 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 005373 336 DEL 338 (699)
Q Consensus 336 dEL 338 (699)
.++
T Consensus 122 ~~~ 124 (215)
T PF07083_consen 122 EEY 124 (215)
T ss_pred HHc
No 247
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=45.84 E-value=3.8e+02 Score=28.14 Aligned_cols=140 Identities=19% Similarity=0.271 Sum_probs=70.0
Q ss_pred ChHHHHHhhhhcc--cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHH
Q 005373 201 TPAEVRQIYSHMK--HLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAF 278 (699)
Q Consensus 201 ts~ellkvlnri~--leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~ 278 (699)
.+++|..+|-+|. +..-...--...++|..|| |..|++.-....+.|..+-|.+.-|.-. +..+-+|..+-
T Consensus 62 ~sk~lG~~L~~i~~~~r~ie~~l~~~~~~~~~~l------i~pLe~k~e~d~k~i~~~~K~y~~E~K~-~~~~l~K~~se 134 (223)
T cd07605 62 GSQELGEALKQIVDTHKSIEASLEQVAKAFHGEL------ILPLEKKLELDQKVINKFEKDYKKEYKQ-KREDLDKARSE 134 (223)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 6677777777764 1111111122344554444 4456666666667777777666555221 11122333333
Q ss_pred HHHHHHHHH------HHHHhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHH
Q 005373 279 IDDLKAEIS------RERKNRQRIEIVNSKLVNELAD-AKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVE 350 (699)
Q Consensus 279 i~slk~ELe------~ERk~Rkr~E~ln~KL~~ELae-~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe 350 (699)
+.-++..-. .+-++++-+|.+|.|-. ||.+ .+.++..|| +|..|+=.-+++..|-=|=.++.-.-.++.
T Consensus 135 l~Kl~KKs~~~~~~k~~~~l~~~~e~v~~k~~-ele~~~~~~lr~al--~EERrRyc~lv~~~c~v~~~e~~~~~~~~~ 210 (223)
T cd07605 135 LKKLQKKSQKSGTGKYQEKLDQALEELNDKQK-ELEAFVSQGLRDAL--LEERRRYCFLVDKHCSVAKHEIAYHAKAMT 210 (223)
T ss_pred HHHHHHHHcccCCCcccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222211 33344455777777753 2222 233444443 355667778999999766555543433333
No 248
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=45.76 E-value=3.6e+02 Score=27.76 Aligned_cols=65 Identities=20% Similarity=0.213 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRE 289 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~E 289 (699)
++-+..=|+.=+..|..-+.+-...+.+.+.++.+..++-..=+.+-++.+..+....+.+.+.+
T Consensus 75 ~~pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~ 139 (204)
T PRK09174 75 LPRIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAE 139 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667777788888888888888888888888888777666666666655555544444433
No 249
>PRK14162 heat shock protein GrpE; Provisional
Probab=45.50 E-value=3.7e+02 Score=27.84 Aligned_cols=46 Identities=20% Similarity=0.336 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhh
Q 005373 224 MVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRS 269 (699)
Q Consensus 224 lv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKs 269 (699)
-+..|+.+|...+.++.+|...-.....+.+.+.|+...|+...+.
T Consensus 40 e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~ 85 (194)
T PRK14162 40 PVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIK 85 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577788888888888887666666666666666666666554333
No 250
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=45.42 E-value=1.8e+02 Score=28.00 Aligned_cols=20 Identities=30% Similarity=0.273 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q 005373 326 KERELIEEVCDELAKEIGED 345 (699)
Q Consensus 326 KaRellE~vCdELAkeI~ed 345 (699)
..++..|.+|..+++.|.|.
T Consensus 119 ~~~~~~e~~~~~~~~riaEl 138 (139)
T PF13935_consen 119 EQAEAYEGEIADYAKRIAEL 138 (139)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34556677777777766553
No 251
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=45.06 E-value=3.9e+02 Score=28.30 Aligned_cols=51 Identities=16% Similarity=0.155 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 005373 274 KIRAFIDDLKAEISRERKNRQRIEIVNSKL---VNELADAKVSAKRYMQDYEKE 324 (699)
Q Consensus 274 ki~a~i~slk~ELe~ERk~Rkr~E~ln~KL---~~ELae~Kss~~~a~kelE~E 324 (699)
..++.++..+.+|+.=++.-.|.+.|..+= ..++.+++..+..+...++.-
T Consensus 111 ~~~~~l~~ak~~l~~a~~~~~r~~~L~~~g~vs~~~~~~~~~~~~~a~~~~~~a 164 (331)
T PRK03598 111 QARAAVKQAQAAYDYAQNFYNRQQGLWKSRTISANDLENARSSRDQAQATLKSA 164 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555444444444333322 134555555555554444433
No 252
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.01 E-value=6.4e+02 Score=30.54 Aligned_cols=102 Identities=27% Similarity=0.417 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hccHHHHHHHHHhhHHHHhhh-------hh
Q 005373 296 IEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEI---GEDKAEVEALKRESMKLREEV-------DD 365 (699)
Q Consensus 296 ~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI---~edkaEVe~LKres~k~reE~-------Ee 365 (699)
+|.--+||-.||.|.|---.+.+.||-.=-.... -|-|.| +.-.-|.|.||++..++-+|+ |+
T Consensus 147 ~E~qR~rlr~elKe~KfRE~RllseYSELEEENI-------sLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee 219 (772)
T KOG0999|consen 147 VEDQRRRLRDELKEYKFREARLLSEYSELEEENI-------SLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEE 219 (772)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------hHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445555666666555555554432111111 222322 233345566666665554443 34
Q ss_pred hHHHHHHHHHhHHHhhhhhhhhhhhhhHHHhHHHHHHHHHHHHHHhh
Q 005373 366 ERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSS 412 (699)
Q Consensus 366 ER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~eLE~FL~s 412 (699)
.-.+--|||- +|.+|=.+|..-..+-+-|+.||+.|+..
T Consensus 220 ~~~Lk~IAek--------QlEEALeTlq~EReqk~alkkEL~q~~n~ 258 (772)
T KOG0999|consen 220 AIRLKEIAEK--------QLEEALETLQQEREQKNALKKELSQYRNA 258 (772)
T ss_pred HHHHHHHHHH--------HHHHHHHHHHhHHHHHHHHHHHHHHhcch
Confidence 4444455553 34455555544444555577788777765
No 253
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=44.96 E-value=3.1e+02 Score=28.89 Aligned_cols=82 Identities=18% Similarity=0.291 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHH
Q 005373 270 REHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEV 349 (699)
Q Consensus 270 kE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEV 349 (699)
.+-+.+...++.++...+.-...|..+..+-..+..++.........+.+.+.+.-+ .+...|-.++.+..+.-.+|
T Consensus 68 ~~le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~~~~~---~l~~~~~k~~~~l~~l~~~v 144 (256)
T PF14932_consen 68 EDLEALEEELEALQEYKELYEQLRNKLQQLDSSLSQELSELEGKEEEAQKKLKKAQK---ELSAECSKLNNELNQLLGEV 144 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 344677777777777777777777777777777777777766666555555544333 37777777777766665555
Q ss_pred HHHHH
Q 005373 350 EALKR 354 (699)
Q Consensus 350 e~LKr 354 (699)
..+-.
T Consensus 145 ~~l~~ 149 (256)
T PF14932_consen 145 SKLAS 149 (256)
T ss_pred HHHHH
Confidence 55443
No 254
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=44.63 E-value=66 Score=30.76 Aligned_cols=50 Identities=24% Similarity=0.394 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHH
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEK 274 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~ek 274 (699)
+..|+.+|...+.++.+|...-.....+++.+.+++..++...+....+.
T Consensus 13 ~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~ 62 (165)
T PF01025_consen 13 IEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALEK 62 (165)
T ss_dssp HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566666655555445556666665555554444433333
No 255
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=44.63 E-value=1.1e+02 Score=36.57 Aligned_cols=27 Identities=37% Similarity=0.393 Sum_probs=14.1
Q ss_pred HHHHhhhccHHHHHHHHHhhHHHHhhh
Q 005373 337 ELAKEIGEDKAEVEALKRESMKLREEV 363 (699)
Q Consensus 337 ELAkeI~edkaEVe~LKres~k~reE~ 363 (699)
||--+|.++...+|+||+...+.+-|+
T Consensus 104 el~seI~~~n~kiEelk~~i~~~q~eL 130 (907)
T KOG2264|consen 104 ELNSEIEEINTKIEELKRLIPQKQLEL 130 (907)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhHHHH
Confidence 444555556666666665544443333
No 256
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=44.11 E-value=8.3e+02 Score=31.57 Aligned_cols=26 Identities=15% Similarity=0.336 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 301 SKLVNELADAKVSAKRYMQDYEKERK 326 (699)
Q Consensus 301 ~KL~~ELae~Kss~~~a~kelE~ERK 326 (699)
.+|-++|..+..+-..+.++.+..++
T Consensus 327 e~~ek~l~av~~~~~~fekei~~~~q 352 (1141)
T KOG0018|consen 327 ERLEKELKAVEGAKEEFEKEIEERSQ 352 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555555555554
No 257
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.90 E-value=4.6e+02 Score=28.55 Aligned_cols=30 Identities=33% Similarity=0.396 Sum_probs=23.5
Q ss_pred hhhhhhhhhhHHHhHHHHHHHHHHHHHHhh
Q 005373 383 MKLVDAKVAVEQKYSQMNKLVAELEAFLSS 412 (699)
Q Consensus 383 MKL~dAk~~leeK~s~ldkL~~eLE~FL~s 412 (699)
-+|.+.+..+++|+..|..|..|+|+-+..
T Consensus 158 ~~Le~kq~~l~~~~e~l~al~~e~e~~~~~ 187 (265)
T COG3883 158 KSLEEKQAALEDKLETLVALQNELETQLNS 187 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777778888888888888888887765
No 258
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=43.57 E-value=2.9e+02 Score=26.08 Aligned_cols=56 Identities=18% Similarity=0.306 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEIS 287 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe 287 (699)
...|+.+....+..++.+.+ +++.+.++|..++...-..+..+....++....+|.
T Consensus 38 ~~~l~~~~~~~~~~l~~~~~-------el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~ 93 (158)
T PF03938_consen 38 QAKLQEKFKALQKELQAKQK-------ELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQ 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444 344444444444333333344444444444444443
No 259
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=43.28 E-value=2.9e+02 Score=26.05 Aligned_cols=82 Identities=22% Similarity=0.280 Sum_probs=56.4
Q ss_pred HHHhhhhcc---cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHH
Q 005373 205 VRQIYSHMK---HLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDD 281 (699)
Q Consensus 205 llkvlnri~---leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~s 281 (699)
+--+.|||. ---...++-+.|..|-.-|---+.++=.++++....+-..+.|-.+|+.=|. .+++|+.
T Consensus 11 v~if~nRmksns~RGrsIanDsaVqsLF~~lt~mH~~LL~~i~~~ee~R~~~E~lQdkL~qi~e---------AR~AlDa 81 (96)
T PF12210_consen 11 VEIFVNRMKSNSSRGRSIANDSAVQSLFQTLTAMHPQLLKYIQEQEEKRVYYEGLQDKLAQIKE---------ARAALDA 81 (96)
T ss_dssp HHHHHHHHHHHHHTT--GGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHhHhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHH
Confidence 445567776 1123446677888888888888888888888888788788888888876654 5688999
Q ss_pred HHHHHHHHHHhhhhHH
Q 005373 282 LKAEISRERKNRQRIE 297 (699)
Q Consensus 282 lk~ELe~ERk~Rkr~E 297 (699)
|++| ..+|+|+..|
T Consensus 82 lR~e--H~~klrr~aE 95 (96)
T PF12210_consen 82 LREE--HREKLRRQAE 95 (96)
T ss_dssp HHHH--HHHHHHHHH-
T ss_pred HHHH--HHHHHHHHhc
Confidence 9886 4455665544
No 260
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=43.11 E-value=3.2e+02 Score=26.50 Aligned_cols=38 Identities=29% Similarity=0.403 Sum_probs=17.9
Q ss_pred HHHHHHhhhccHHHHHHHHHhh-HHHHhhhhhhHHHHHHHH
Q 005373 335 CDELAKEIGEDKAEVEALKRES-MKLREEVDDERKMLQMAE 374 (699)
Q Consensus 335 CdELAkeI~edkaEVe~LKres-~k~reE~EeER~MLqmAE 374 (699)
-..++..+...+++...|+.+. ..++. |-|=.|+=|++
T Consensus 57 ~~~~~~~~~~l~~~~~kl~~E~~~~~q~--EldDLL~ll~D 95 (136)
T PF04871_consen 57 LEELASEVKELEAEKEKLKEEARKEAQS--ELDDLLVLLGD 95 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHh
Confidence 3444444555555555555443 12222 33455666665
No 261
>PF09432 THP2: Tho complex subunit THP2; InterPro: IPR018557 The THO complex plays a role in coupling transcription elongation to mRNA export. It is composed of subunits THP2, HPR1, THO2 and MFT1 [].
Probab=42.84 E-value=1.4e+02 Score=29.50 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=18.0
Q ss_pred hhhhhhhhhhhHHHhHHHHHHH
Q 005373 382 QMKLVDAKVAVEQKYSQMNKLV 403 (699)
Q Consensus 382 QMKL~dAk~~leeK~s~ldkL~ 403 (699)
|.|..-||++||.||+.=+.|.
T Consensus 67 ~IKm~RAkY~lENky~L~~tL~ 88 (132)
T PF09432_consen 67 DIKMERAKYSLENKYSLQDTLN 88 (132)
T ss_pred HHHHHHHHHhhhhHHHHHHHHH
Confidence 3599999999999998766654
No 262
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=42.70 E-value=4e+02 Score=29.89 Aligned_cols=18 Identities=39% Similarity=0.294 Sum_probs=12.2
Q ss_pred cchhHHHHHHHHhhhhHH
Q 005373 672 KNSLKAKLLEARMESQKV 689 (699)
Q Consensus 672 K~SLKaKLleARmesqKv 689 (699)
-+|||+|==+--|=.-||
T Consensus 310 dqsLkdKDdaIeMLaKKV 327 (351)
T PF07058_consen 310 DQSLKDKDDAIEMLAKKV 327 (351)
T ss_pred ccchhhhHHHHHHHHHHH
Confidence 357888776666666665
No 263
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=42.70 E-value=4.2e+02 Score=27.76 Aligned_cols=186 Identities=13% Similarity=0.159 Sum_probs=0.0
Q ss_pred CCChHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHH
Q 005373 199 LKTPAEVRQIYSHMKHLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAF 278 (699)
Q Consensus 199 lkts~ellkvlnri~leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~ 278 (699)
+.|....+..+-.. .|-.....+.|...|..++..-..=.++....++...+++..-++.+.- +.-.-+.-+|.+..
T Consensus 55 ~Gtl~~~w~~~~~~-~E~~a~~H~~l~~~L~~~~~~i~~~~~~~~k~~kk~~e~~~~~~~~~q~--~q~~~~~l~kaK~~ 131 (261)
T cd07674 55 LGTFAPMWEVFRVS-SDKLALCHLELMRKLNDLIKDINRYGDEQVKIHKKTKEEAIGTLEAVQS--LQVQSQHLQKSREN 131 (261)
T ss_pred cchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH---HhhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHH
Q 005373 279 IDDLKAEISRER---KNRQRIEIVNSKLVN---ELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEAL 352 (699)
Q Consensus 279 i~slk~ELe~ER---k~Rkr~E~ln~KL~~---ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~L 352 (699)
....-.|.+.-+ ...+.++.++.|+.+ ++.....-+.++..+|+ +-|..+|+.|
T Consensus 132 Y~~~cke~e~a~~~~~s~k~leK~~~K~~ka~~~y~~~~~ky~~~~~~~~------~~m~~~~~~~-------------- 191 (261)
T cd07674 132 YHSKCVEQERLRREGVPQKELEKAELKTKKAAESLRGSVEKYNRARGDFE------QKMLESAQKF-------------- 191 (261)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH--------------
Q ss_pred HHhhHHHHhhhhhhHH------HHHHHHHhHHHhhhhhhhhhhhhhHHHhHHHHHHHHHHHHHHhhcCCCCC
Q 005373 353 KRESMKLREEVDDERK------MLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSSRSINPD 418 (699)
Q Consensus 353 Kres~k~reE~EeER~------MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~eLE~FL~sk~~~~d 418 (699)
.++|++|. |++++....+ ++-.+...-..+..-...+| -..||..|...++.+..
T Consensus 192 --------Q~~Ee~Ri~~lk~~L~~~~~~~~~--~~~~~~~~~e~~~~~l~~id-~~~Di~~fv~~~~tG~~ 252 (261)
T cd07674 192 --------QDIEETHLRHMKLLIKGYSHSVED--THVQIGQVHEEFKQNVENVG-VENLIRKFAESKGTGKE 252 (261)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHH--ccchHHHHHHHHHHHHHhCC-HHHHHHHHHHhCCCCCC
No 264
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=42.54 E-value=2.1e+02 Score=31.45 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 005373 248 SSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELAD 309 (699)
Q Consensus 248 s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae 309 (699)
.++..+-.|-.+|.+=-+ ..... ......+|+.+|+.|.+.-.+-+-+-.|-++
T Consensus 39 ~yk~kLa~Lq~~Leel~~-------g~~~e-Yl~~~~~L~~~~kerl~~aely~e~~~e~v~ 92 (291)
T KOG4466|consen 39 MYKDKLAQLQAQLEELGQ-------GTAPE-YLKRVKKLDESRKERLRVAELYREYCVERVE 92 (291)
T ss_pred HHHHHHHHHHHHHHHHhc-------cccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666655544211 22222 2334567888888888777666666555443
No 265
>PLN02372 violaxanthin de-epoxidase
Probab=42.53 E-value=3e+02 Score=31.93 Aligned_cols=53 Identities=21% Similarity=0.396 Sum_probs=38.6
Q ss_pred HHHHHHHHH-HHHhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 280 DDLKAEISR-ERKNRQRIEIVNSK--LVNELADAKVSAKRYMQDYEKERKERELIEEV 334 (699)
Q Consensus 280 ~slk~ELe~-ERk~Rkr~E~ln~K--L~~ELae~Kss~~~a~kelE~ERKaRellE~v 334 (699)
..+..||+. -+++++..+.+=.+ |+..|.+++.-..+++++|-+|-+ ++++++
T Consensus 382 ~~~~~e~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~lskee~--~~l~~~ 437 (455)
T PLN02372 382 RQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFLKELSKEEK--ELLEKL 437 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHH
Confidence 334455554 46788888888888 999999999999999998776644 444433
No 266
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=42.48 E-value=4e+02 Score=27.41 Aligned_cols=74 Identities=19% Similarity=0.271 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhccHHHHHHHHHh
Q 005373 282 LKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERK--ERELIEEVCDELAKEIGEDKAEVEALKRE 355 (699)
Q Consensus 282 lk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERK--aRellE~vCdELAkeI~edkaEVe~LKre 355 (699)
|.+.|+.=.+++..++.+-...-.+|.+++.-....+.+...+-+ ..++++++=.|+.+-+.+-+++++..|.+
T Consensus 89 I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I~~ek~~ 164 (204)
T PRK09174 89 IAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARIAAIKAK 164 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666777777777777777787777666666555443322 23344455555555555555555554443
No 267
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=42.12 E-value=4e+02 Score=27.30 Aligned_cols=71 Identities=21% Similarity=0.215 Sum_probs=36.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhccHHHHHHHHHh
Q 005373 285 EISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERK--ERELIEEVCDELAKEIGEDKAEVEALKRE 355 (699)
Q Consensus 285 ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERK--aRellE~vCdELAkeI~edkaEVe~LKre 355 (699)
.|+.=.+.++.++.+-...-..|.+++.-+...+.+...+-. .-+++++.=.+..+-+.+-+++++.-+..
T Consensus 87 ~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~ 159 (205)
T PRK06231 87 EINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKERRE 159 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444443333222 34566666677777777777777765554
No 268
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=42.09 E-value=3.9e+02 Score=27.16 Aligned_cols=11 Identities=18% Similarity=0.021 Sum_probs=5.3
Q ss_pred CCChHHHHHhh
Q 005373 199 LKTPAEVRQIY 209 (699)
Q Consensus 199 lkts~ellkvl 209 (699)
.-+.+++++.|
T Consensus 29 ~~~VKdvlq~L 39 (188)
T PF03962_consen 29 SMSVKDVLQSL 39 (188)
T ss_pred hhhHHHHHHHH
Confidence 33445555544
No 269
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=42.02 E-value=4.6e+02 Score=28.02 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005373 225 VAALEAEVEQARTRIQELETE 245 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E 245 (699)
+..++++|..|++++..+.+.
T Consensus 88 l~~a~a~l~~a~a~l~~~~~~ 108 (346)
T PRK10476 88 VAQAQADLALADAQIMTTQRS 108 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666655433
No 270
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=41.75 E-value=6.4e+02 Score=29.57 Aligned_cols=40 Identities=13% Similarity=0.214 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhh
Q 005373 327 ERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDE 366 (699)
Q Consensus 327 aRellE~vCdELAkeI~edkaEVe~LKres~k~reE~EeE 366 (699)
.++-|+.+-.=|-..|..++..|+.+-.+..+.+..+.++
T Consensus 134 ~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~q 173 (475)
T PRK10361 134 NRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHE 173 (475)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666655555555555333
No 271
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=41.72 E-value=2.4e+02 Score=24.67 Aligned_cols=75 Identities=16% Similarity=0.287 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 005373 222 VSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNS 301 (699)
Q Consensus 222 ~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~ 301 (699)
-+++..|.-.|+....+|++|.+-|..-...|+.+-.+|.+-... +.+.+.+.-+. =...=...|+++..+|.
T Consensus 6 ~Gl~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~------~~~~~~~~~~~-y~~KL~~ikkrm~~l~~ 78 (92)
T PF14712_consen 6 EGLLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEV------EQINEPFDLDP-YVKKLVNIKKRMSNLHE 78 (92)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hhhhhHHHhhH-HHHHHHHHHHHHHHHHH
Confidence 367888999999999999999998888888877777776655331 22222221111 12222356888888888
Q ss_pred HH
Q 005373 302 KL 303 (699)
Q Consensus 302 KL 303 (699)
++
T Consensus 79 ~l 80 (92)
T PF14712_consen 79 RL 80 (92)
T ss_pred HH
Confidence 87
No 272
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=41.62 E-value=4.4e+02 Score=27.71 Aligned_cols=112 Identities=20% Similarity=0.280 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhccHHHHH
Q 005373 275 IRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELI----EEVCDELAKEIGEDKAEVE 350 (699)
Q Consensus 275 i~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRell----E~vCdELAkeI~edkaEVe 350 (699)
|.-+|++++.+|..=|+..-++=...+.|-++|.+...-..+. |.+++..| |++..+++..+..++..+.
T Consensus 29 l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~------e~~A~~Al~~g~E~LAr~al~~~~~le~~~~ 102 (225)
T COG1842 29 LEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKL------EEKAELALQAGNEDLAREALEEKQSLEDLAK 102 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555544444444444445555554443332222 34555555 6777777777777877777
Q ss_pred HHHHhhHHHHhhh-hhhHHHHHHHHHhHHHhhhhhhhhhhhhh
Q 005373 351 ALKRESMKLREEV-DDERKMLQMAEVWREERVQMKLVDAKVAV 392 (699)
Q Consensus 351 ~LKres~k~reE~-EeER~MLqmAEvWREERVQMKL~dAk~~l 392 (699)
.++.....+.+=+ .-.+.|-.+-.-|-+=|-|+....|+..-
T Consensus 103 ~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~ 145 (225)
T COG1842 103 ALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAA 145 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777655554333 22333444444455555555555555443
No 273
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.43 E-value=3.1e+02 Score=33.01 Aligned_cols=58 Identities=31% Similarity=0.351 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHH
Q 005373 317 YMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAE 374 (699)
Q Consensus 317 a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAE 374 (699)
-+|+|-.-+..|+.+++....||+.|.+.+..-+.|-+...+++--..-+...|-+||
T Consensus 600 QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AE 657 (741)
T KOG4460|consen 600 QLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAE 657 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHH
Confidence 3444444556677899999999999998888878887777776543333444444444
No 274
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=41.15 E-value=3.8e+02 Score=26.78 Aligned_cols=71 Identities=17% Similarity=0.254 Sum_probs=33.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhccHHHHHHHHH
Q 005373 284 AEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERK--ERELIEEVCDELAKEIGEDKAEVEALKR 354 (699)
Q Consensus 284 ~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERK--aRellE~vCdELAkeI~edkaEVe~LKr 354 (699)
+.|+.=.+.++.++.+-...-..|.+++.-..+.+.+...+-+ ..+++++.=.|.++.+.+-+++++..|.
T Consensus 69 ~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~~~~A~~e~~~~~aea~~~I~~~k~ 141 (181)
T PRK13454 69 NDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAETRAEIQAELDVAIAKADAEIAAKAAESEKRIAEIRA 141 (181)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555666566666666666555555544432221 2233444444444444444444444443
No 275
>PRK04654 sec-independent translocase; Provisional
Probab=41.10 E-value=1.9e+02 Score=30.53 Aligned_cols=30 Identities=13% Similarity=-0.017 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 297 EIVNSKLVNELADAKVSAKRYMQDYEKERK 326 (699)
Q Consensus 297 E~ln~KL~~ELae~Kss~~~a~kelE~ERK 326 (699)
=.+=+.|++=+.++|..+..+..++++|-+
T Consensus 26 Pe~aRtlGk~irk~R~~~~~vk~El~~El~ 55 (214)
T PRK04654 26 PKAARFAGLWVRRARMQWDSVKQELERELE 55 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344456666666666666666666666654
No 276
>PRK14153 heat shock protein GrpE; Provisional
Probab=40.95 E-value=3.8e+02 Score=27.74 Aligned_cols=67 Identities=16% Similarity=0.290 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLV 304 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~ 304 (699)
+.++..||+..+.++.+|...-.....+++.+.|....|+...+. ..+.+++
T Consensus 35 ~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~~----------------------------~a~~~~~ 86 (194)
T PRK14153 35 DSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENRK----------------------------FVLEQVL 86 (194)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHH
Confidence 456667777777777777655555555666666665555443222 2345666
Q ss_pred HHHHHHHHHHHHHHH
Q 005373 305 NELADAKVSAKRYMQ 319 (699)
Q Consensus 305 ~ELae~Kss~~~a~k 319 (699)
++|..+--.|.+|++
T Consensus 87 ~~LLpv~DnLerAl~ 101 (194)
T PRK14153 87 LDLLEVTDNFERALE 101 (194)
T ss_pred HHHhhHHhHHHHHHh
Confidence 666666666666654
No 277
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=40.92 E-value=4.8e+02 Score=27.93 Aligned_cols=121 Identities=23% Similarity=0.346 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLV 304 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~ 304 (699)
|..|-.|+++-..++++-..+-...+.+++.+-+.+.+= ..+-+.+..-|..+..+|. +.|+|.+.+-.||+
T Consensus 12 iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~-----~~e~e~le~qv~~~e~ei~---~~r~r~~~~e~kl~ 83 (239)
T COG1579 12 IQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEAL-----EIELEDLENQVSQLESEIQ---EIRERIKRAEEKLS 83 (239)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Confidence 344444555444444444333334444444444433322 2233444444444444443 33344444444441
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHh
Q 005373 305 NELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRE 355 (699)
Q Consensus 305 ~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKre 355 (699)
. ..+. -.+..+-.++...++...-+|+--.+|-.++...+.+++.++..
T Consensus 84 ~-v~~~-~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~ 132 (239)
T COG1579 84 A-VKDE-RELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKER 132 (239)
T ss_pred c-cccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1111 11223333333333333444444444444444444444444433
No 278
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.81 E-value=6.5e+02 Score=29.42 Aligned_cols=126 Identities=19% Similarity=0.273 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhh----------HHHHHHHHHHHHHHHHH----H
Q 005373 223 SMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSR----------EHEKIRAFIDDLKAEIS----R 288 (699)
Q Consensus 223 Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKsk----------E~eki~a~i~slk~ELe----~ 288 (699)
-|+-.|..++-+|+.+|++-+++--..++.|-+=.++|.++.-.-..+ |-.-..++|..++.=+- +
T Consensus 345 ~ll~tlq~~iSqaq~~vq~qma~lv~a~e~i~~e~~rl~q~nd~l~~~~~l~t~~Qq~e~~~lp~ave~l~ql~~~~r~~ 424 (542)
T KOG0993|consen 345 DLLVTLQAEISQAQSEVQKQMARLVVASETIADEDSRLRQINDLLTTVGELETQVQQAEVQNLPAAVEQLAQLYKQRRTS 424 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhHhhhhcchhhHHHHHHHHHHHHHH
Confidence 356788999999999999888887777777777777776665444332 22333444444332221 1
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhccHHHHHHHHHh
Q 005373 289 ERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEE-------VCDELAKEIGEDKAEVEALKRE 355 (699)
Q Consensus 289 ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~-------vCdELAkeI~edkaEVe~LKre 355 (699)
=+.-+.-+|-+-.+|.+|+--.+ ..||+|+-+++-||. -|.++---|...|.|.|.|++.
T Consensus 425 ~~~~l~a~ehv~e~l~~ei~~L~-------eqle~e~~~~~~le~ql~~~ve~c~~~~aS~~slk~e~erl~qq 491 (542)
T KOG0993|consen 425 LQQELDASEHVQEDLVKEIQSLQ-------EQLEKERQSEQELEWQLDDDVEQCSNCDASFASLKVEPERLHQQ 491 (542)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 12223345666677777764333 357888888887773 4666666777777777777654
No 279
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=40.26 E-value=6.1e+02 Score=28.94 Aligned_cols=70 Identities=16% Similarity=0.248 Sum_probs=41.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhccHHHHHHHHHh
Q 005373 286 ISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKE--RKERELIEEVCDELAKEIGEDKAEVEALKRE 355 (699)
Q Consensus 286 Le~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~E--RKaRellE~vCdELAkeI~edkaEVe~LKre 355 (699)
|++=.+.+++++.+..+.-+.|.+++.-....+.+...+ +...+++++.=.|..+-+..-+++++..|+.
T Consensus 41 L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~Ie~ek~~ 112 (445)
T PRK13428 41 LAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQVQLLRAQ 112 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333335677777777776666777666666655554433 2234566666666666666666666665544
No 280
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=40.14 E-value=1.3e+02 Score=29.92 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=15.6
Q ss_pred hhhccHHHHHHHHHhhHHHHhhh
Q 005373 341 EIGEDKAEVEALKRESMKLREEV 363 (699)
Q Consensus 341 eI~edkaEVe~LKres~k~reE~ 363 (699)
+|..-+.++++||.++.....|.
T Consensus 169 el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 169 ELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 33346778888888887766554
No 281
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=39.80 E-value=1.9e+02 Score=33.67 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 300 NSKLVNELADAKVSAKRYMQDYEK 323 (699)
Q Consensus 300 n~KL~~ELae~Kss~~~a~kelE~ 323 (699)
|..+-+||..+..++.+|-++||-
T Consensus 304 ~e~~rkelE~lR~~L~kAEkele~ 327 (575)
T KOG4403|consen 304 NETSRKELEQLRVALEKAEKELEA 327 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333445777777777777666654
No 282
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=39.78 E-value=8.6e+02 Score=30.49 Aligned_cols=81 Identities=21% Similarity=0.307 Sum_probs=41.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHhhHH-HHHHhhhh------HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 005373 239 IQELETERRSSKKKLEHFLRKVSE-EKAAWRSR------EHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAK 311 (699)
Q Consensus 239 I~eL~~E~~s~k~eie~l~KqlaE-EK~awKsk------E~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~K 311 (699)
++.|..|.--.++.+.-|=.||.| ||+-.-+. |---++..=-+|+..|.+=.|.-.-+...|..|-+.+..-|
T Consensus 389 ~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~ 468 (861)
T PF15254_consen 389 MQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQK 468 (861)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHH
Confidence 445555554455555555555555 33321111 22223333344566676666666666666766666665555
Q ss_pred HHHHHHHH
Q 005373 312 VSAKRYMQ 319 (699)
Q Consensus 312 ss~~~a~k 319 (699)
---+++++
T Consensus 469 ~Enk~~~~ 476 (861)
T PF15254_consen 469 EENKRLRK 476 (861)
T ss_pred HHHHHHHH
Confidence 44444433
No 283
>PRK14147 heat shock protein GrpE; Provisional
Probab=39.54 E-value=1.8e+02 Score=29.30 Aligned_cols=67 Identities=22% Similarity=0.275 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLV 304 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~ 304 (699)
+..|..+|+..+.++.+|...-....-+++.+.|++..|+... ....+.+++
T Consensus 20 ~~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~----------------------------~~~a~~~~~ 71 (172)
T PRK14147 20 TDPLKAEVESLRSEIALVKADALRERADLENQRKRIARDVEQA----------------------------RKFANEKLL 71 (172)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHH
Confidence 4457777777777777776655555566666666555554321 123457788
Q ss_pred HHHHHHHHHHHHHHH
Q 005373 305 NELADAKVSAKRYMQ 319 (699)
Q Consensus 305 ~ELae~Kss~~~a~k 319 (699)
++|..+--.|.+|+.
T Consensus 72 ~~lLpv~DnlerAl~ 86 (172)
T PRK14147 72 GELLPVFDSLDAGLT 86 (172)
T ss_pred HHHhhhhhHHHHHHh
Confidence 888887777766653
No 284
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=39.43 E-value=59 Score=38.62 Aligned_cols=62 Identities=24% Similarity=0.379 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHH---------HHHhhhhHHHHHHHHHHHHHHHH
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEE---------KAAWRSREHEKIRAFIDDLKAEI 286 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEE---------K~awKskE~eki~a~i~slk~EL 286 (699)
+..+..++..-...|.+|+.+......+++.+-..+..- +.+--.||.+-+++.|.+.-.|+
T Consensus 359 ~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~ 429 (722)
T PF05557_consen 359 LGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEE 429 (722)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 334444555555555555555544444444444333322 22334577788888887765554
No 285
>KOG4421 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.31 E-value=1.7e+02 Score=33.57 Aligned_cols=123 Identities=24% Similarity=0.311 Sum_probs=79.8
Q ss_pred HhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHH------HhhhhHHH-------
Q 005373 207 QIYSHMKHLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKA------AWRSREHE------- 273 (699)
Q Consensus 207 kvlnri~leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~------awKskE~e------- 273 (699)
+||..-.++||- -+..|..||.+--+-|+..++|..+..-.-+.|.+.+..=.. +-+.+..+
T Consensus 32 kvlke~viee~g-----k~~kl~eelk~k~a~irrieaendsl~frndql~rrvenfqfe~pt~~aa~k~~~~k~~~~~t 106 (637)
T KOG4421|consen 32 KVLKEAVIEEQG-----KEAKLREELKQKAASIRRIEAENDSLGFRNDQLERRVENFQFEIPTHEAAKKKDKDKGGRRGT 106 (637)
T ss_pred HHHHHHHHHHhc-----chhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHhccCCCCCccccccccccCCCCCC
Confidence 344343355654 367899999999999999999998876555566665543110 11111211
Q ss_pred ------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHH
Q 005373 274 ------KIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKA 347 (699)
Q Consensus 274 ------ki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edka 347 (699)
...+.|+.+..+|-.| +.-|.+|+-||+ |+||.--.-|-++...||++.++.+.
T Consensus 107 qsdsaaaaaarid~~ee~l~~~-------~aq~erlvgeia-------------enerqhavemaelsekia~emr~led 166 (637)
T KOG4421|consen 107 QSDSAAAAAARIDAAEEALIFE-------EAQKERLVGEIA-------------ENERQHAVEMAELSEKIADEMRDLED 166 (637)
T ss_pred CCCcccccccccchHHHHHHHH-------HHHhhHHHHHHH-------------hhhHhhHHHHHHHHHHHHHHHHHHHH
Confidence 1334466666666554 456778888886 46677766777778888888888877
Q ss_pred HHHHHHH
Q 005373 348 EVEALKR 354 (699)
Q Consensus 348 EVe~LKr 354 (699)
|++.|.-
T Consensus 167 e~~r~~m 173 (637)
T KOG4421|consen 167 ETERIAM 173 (637)
T ss_pred HHHHHHH
Confidence 7777644
No 286
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=39.24 E-value=4.5e+02 Score=27.13 Aligned_cols=149 Identities=30% Similarity=0.401 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHH------HHHHHHHHHHHhhhhHH
Q 005373 224 MVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFID------DLKAEISRERKNRQRIE 297 (699)
Q Consensus 224 lv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~------slk~ELe~ERk~Rkr~E 297 (699)
+|+||+. -|.-|+.|+=|+.-....+..|-+..+.-|-++.+...++-.+.-. ++-..|. -+|
T Consensus 2 visALK~----LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~-------aAE 70 (178)
T PF14073_consen 2 VISALKN----LQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLS-------AAE 70 (178)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHH-------HHH
Confidence 4666654 4678999999998888888888777777776665433322211111 1111111 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhccH---HHHHHHHHhhHHHH-hhhhhhHHH
Q 005373 298 IVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKE----IGEDK---AEVEALKRESMKLR-EEVDDERKM 369 (699)
Q Consensus 298 ~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAke----I~edk---aEVe~LKres~k~r-eE~EeER~M 369 (699)
+=-+.|-+.|.-++.-+..| |.||. .++|.- ..|-++ ..+.. ..++.|-++..++- --.--|.+|
T Consensus 71 tRCslLEKQLeyMRkmv~~a----e~er~--~~le~q-~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki 143 (178)
T PF14073_consen 71 TRCSLLEKQLEYMRKMVESA----EKERN--AVLEQQ-VSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKI 143 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHhhh--HHHHHH-HHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444333333 33332 222221 222222 11222 23344445555543 222457788
Q ss_pred HHHHHHhHHHhhhhhhhhhhh
Q 005373 370 LQMAEVWREERVQMKLVDAKV 390 (699)
Q Consensus 370 LqmAEvWREERVQMKL~dAk~ 390 (699)
-++=+-+.+|-=|-||+.-|.
T Consensus 144 ~~LE~KL~eEehqRKlvQdkA 164 (178)
T PF14073_consen 144 KELEEKLQEEEHQRKLVQDKA 164 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888876554
No 287
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=38.80 E-value=6e+02 Score=28.37 Aligned_cols=126 Identities=24% Similarity=0.344 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHH---H--HHHHHhhhhHHHHH
Q 005373 226 AALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAE---I--SRERKNRQRIEIVN 300 (699)
Q Consensus 226 ~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~E---L--e~ERk~Rkr~E~ln 300 (699)
.-|+.||+.-+.+++-|..|-+..+..--.+-.+..-|-.---+.=-.| |+.++.| | ..|+.--.=...|.
T Consensus 37 ~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKk----l~~l~keKe~L~~~~e~EEE~ltn~L~ 112 (310)
T PF09755_consen 37 RVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKK----LQQLKKEKETLALKYEQEEEFLTNDLS 112 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888777666544333333222211111111111 1111111 1 22222222223344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhccHHHHHHHHHhhHHH
Q 005373 301 SKLVNELADAKVSAKRYMQDYEKERKE-RELIEEVCDELAKEIGEDKAEVEALKRESMKL 359 (699)
Q Consensus 301 ~KL~~ELae~Kss~~~a~kelE~ERKa-RellE~vCdELAkeI~edkaEVe~LKres~k~ 359 (699)
+||. .|-..|..+- .-||.|.-. =.-|-.-|+.|.++...+..+++.|+++-+.+
T Consensus 113 rkl~-qLr~EK~~lE---~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdl 168 (310)
T PF09755_consen 113 RKLN-QLRQEKVELE---NQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDL 168 (310)
T ss_pred HHHH-HHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhH
Confidence 4432 2223333222 223444322 12344567777777777777777777754443
No 288
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=38.73 E-value=4.9e+02 Score=27.90 Aligned_cols=40 Identities=15% Similarity=0.055 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 280 DDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYE 322 (699)
Q Consensus 280 ~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE 322 (699)
..+-.+|+.|||.- -.-.+||-++|...-..+.++.+.|+
T Consensus 98 ~~~~~~l~~~rk~~---~~~~~klqk~l~~~~~~leksKk~Y~ 137 (252)
T cd07675 98 MRYSHDLKGERKMH---LQEGRKAQQYLDMCWKQMDNSKKKFE 137 (252)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445565555432 24445555555444444444444444
No 289
>PF14739 DUF4472: Domain of unknown function (DUF4472)
Probab=38.64 E-value=2.7e+02 Score=26.64 Aligned_cols=79 Identities=22% Similarity=0.230 Sum_probs=53.8
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 005373 214 HLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNR 293 (699)
Q Consensus 214 leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~R 293 (699)
|-|||- +-+-.|+.++-.+-.+|-+|+.... +....+.++.+.+.
T Consensus 22 L~Eq~E---aE~FELk~~vL~lE~rvleLel~~~--------------------------~~~~~~~~~~~~~~------ 66 (108)
T PF14739_consen 22 LREQHE---AEKFELKNEVLRLENRVLELELHGD--------------------------KAAPQIADLRHRLA------ 66 (108)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHhhcc--------------------------hhhHHHhhHHHHHH------
Confidence 567766 3567888888888888888876543 12222233322222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 294 QRIEIVNSKLVNELADAKVSAKRYMQDYEKERKER 328 (699)
Q Consensus 294 kr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaR 328 (699)
-++....+|+.|+.-.+..+...-++++.|....
T Consensus 67 -~~~~~~~~l~~e~~~l~~~~~a~~k~~~~e~~k~ 100 (108)
T PF14739_consen 67 -EAQEDRQELQEEYVSLKKNYQALPKAFEAEVAKN 100 (108)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 3455677899999999999999999998887654
No 290
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=37.87 E-value=8e+02 Score=29.59 Aligned_cols=72 Identities=22% Similarity=0.284 Sum_probs=39.9
Q ss_pred HHHHHhhHHHHhhhhhhHHHHHHHHHhHHHhhhhhhhhhhhhhHHHhHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 005373 350 EALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSSRSINPDIQEMKEAEMLR 429 (699)
Q Consensus 350 e~LKres~k~reE~EeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~eLE~FL~sk~~~~d~~~~r~ae~~r 429 (699)
..+.....+++.+. +.+|.+.++.. | .+|+ ..++.|+.+|-+|...-. ....+.-+-.+.++
T Consensus 156 ~~~~~~~~~vr~~w--~~~~~~~c~~f-----Q--------~~Ee--~rl~~lk~~l~~~~~~is-~~~~~~~q~~E~~k 217 (611)
T KOG2398|consen 156 RSLVAKLEKVRKDW--EQEMTDLCLKF-----Q--------EIEE--SRLSFLKEELWLFANQIS-ESCVKIDQVMEEFK 217 (611)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHH-----H--------HHHH--HHHHHHHHHHHHHHHHHH-HhccchhHHHHHHH
Confidence 33333344455555 56677766521 1 1232 356777777777776632 11223335556778
Q ss_pred HHHhhccccc
Q 005373 430 QAAASVNIQE 439 (699)
Q Consensus 430 qs~eSv~~~~ 439 (699)
+.|++..+.+
T Consensus 218 ~~le~~sv~~ 227 (611)
T KOG2398|consen 218 LTLESCSVDE 227 (611)
T ss_pred HhhccCCHHH
Confidence 8888887764
No 291
>PF15175 SPATA24: Spermatogenesis-associated protein 24
Probab=37.28 E-value=4.6e+02 Score=26.59 Aligned_cols=85 Identities=25% Similarity=0.356 Sum_probs=54.7
Q ss_pred HHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 250 KKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERE 329 (699)
Q Consensus 250 k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRe 329 (699)
+.+.+.+.++|.+||+ ||.|-++.+..=-+.|.. +-=.+|.||.-|-+|=..-..+|...---.-+|-....
T Consensus 2 keE~~~~~~~l~~Ek~-----eHaKTK~lLake~EKLqf---AlgeieiL~kQl~rek~afe~a~~~vk~k~~~Es~k~d 73 (153)
T PF15175_consen 2 KEEFEAVEKKLEEEKA-----EHAKTKALLAKESEKLQF---ALGEIEILSKQLEREKLAFEKALGSVKSKVLQESSKKD 73 (153)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHhhHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888899999988 677776665443233322 23356778887777766555555555445556777777
Q ss_pred HHHHHHHHHHHhh
Q 005373 330 LIEEVCDELAKEI 342 (699)
Q Consensus 330 llE~vCdELAkeI 342 (699)
-|..=|++.-.+|
T Consensus 74 qL~~KC~~~~~ei 86 (153)
T PF15175_consen 74 QLITKCNEIESEI 86 (153)
T ss_pred HHHHHHHHHHHHH
Confidence 7777888774433
No 292
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=37.10 E-value=5.2e+02 Score=27.23 Aligned_cols=43 Identities=35% Similarity=0.482 Sum_probs=23.5
Q ss_pred HHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHHhHHHhhhhhhhhhhhhhHH
Q 005373 337 ELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQ 394 (699)
Q Consensus 337 ELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQMKL~dAk~~lee 394 (699)
.|+.+|.++.++|..|..+..+--.|. ++.|.+|..|+..++.
T Consensus 79 ~Le~e~~e~~~~i~~l~ee~~~ke~Ea---------------~~lq~el~~ar~~~~~ 121 (246)
T PF00769_consen 79 QLEQELREAEAEIARLEEESERKEEEA---------------EELQEELEEAREDEEE 121 (246)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHH
Confidence 466677777777777766555433333 2334466666665444
No 293
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=37.06 E-value=9.3e+02 Score=30.10 Aligned_cols=74 Identities=16% Similarity=0.071 Sum_probs=37.6
Q ss_pred CCCCcchhhhhccCCCCCCccccccCCCCCCCCCCcccccCccchhhccCCcccCCCcccCCCCCCCCCCCccccccccc
Q 005373 449 NPDDIFSVFEDVNFGESNEREIEPSGAYSPASHASKMHTVSPEVNVINKDNLHRHSNAYVDQNGDIEEDESGWETVSHLE 528 (699)
Q Consensus 449 ~~dDi~si~eel~~~e~~~~ei~~c~~~sp~~~~ski~~~Sp~~~~~~e~~~~~~s~~~~~~n~~~eed~sgwETvSh~E 528 (699)
++.|--+--.++++.... .--.+|+---|..- +.-+.+.+-+-.++..++.....+-+. +..+--+++|.+
T Consensus 421 ~s~~~~s~p~e~~~s~~~-~~~~~~~~~~p~~~------~~~~~~r~~~~t~ke~sp~~~p~~~~~--~~~~~~~~~~~d 491 (916)
T KOG0249|consen 421 NSSDRSSSPGSGNFSPAR-EMDRMGVMTLPSDL------VVSEDNRYDKATIKETSPPSSPRALRL--ESRSLPLGSQED 491 (916)
T ss_pred ccccccCCCcccCcCccc-cccCCccccCcccc------cccccccccCCCCcccCCCCCccchhh--ccCCCCCCCCCC
Confidence 445555555555533221 23345665545332 444555555555556666666666533 444456666665
Q ss_pred ccC
Q 005373 529 DQD 531 (699)
Q Consensus 529 ~qg 531 (699)
..+
T Consensus 492 ~~~ 494 (916)
T KOG0249|consen 492 PRS 494 (916)
T ss_pred CCC
Confidence 544
No 294
>COG5293 Predicted ATPase [General function prediction only]
Probab=36.65 E-value=7.9e+02 Score=29.19 Aligned_cols=153 Identities=21% Similarity=0.257 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHH--
Q 005373 226 AALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNR-QRIEIVNSK-- 302 (699)
Q Consensus 226 ~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~R-kr~E~ln~K-- 302 (699)
+-++.+++--+.+|.||-.++-+.++..+..--.+.++ +-++-|-|....+.+-.++..+=|-+ .+++..|+.
T Consensus 258 ~e~ee~vn~v~~~I~e~~n~~i~~q~~~~~~~~slk~~----~~~~pd~i~~~ye~vg~~fpg~Vkk~~e~v~~F~r~~~ 333 (591)
T COG5293 258 AETEELVNTVDERIAELNNRRISMQSHWKRVKTSLKEQ----ILFCPDEIQVLYEEVGVLFPGQVKKDFEHVIAFNRAIT 333 (591)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhcchhh----ccCChHHHHHHHHHhhhcChHHHHHhHHHHHHHHHHHH
Confidence 34567777788888888777766554322222222222 33556667777666666666554332 345555555
Q ss_pred ------HHHHHHHHHHHHHH---HHHHHHHHH-------HHHHHHHH---HHHHHHHh---hhccHHHHHHHHHhhHHHH
Q 005373 303 ------LVNELADAKVSAKR---YMQDYEKER-------KERELIEE---VCDELAKE---IGEDKAEVEALKRESMKLR 360 (699)
Q Consensus 303 ------L~~ELae~Kss~~~---a~kelE~ER-------KaRellE~---vCdELAke---I~edkaEVe~LKres~k~r 360 (699)
|..|++++...++. .+++|-++| |.+..+|+ ||+|.-.- +.+.+-.++.|++...-..
T Consensus 334 e~R~~yl~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~g~~e~y~~l~ee~~~~~~elae~~~rie~l~k~~~~~~ 413 (591)
T COG5293 334 EERHDYLQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNRGVFEKYQTLCEEIIALRGELAELEYRIEPLRKLHALDQ 413 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHH
Confidence 45677777665543 344444444 23344444 67775443 3334444455544322111
Q ss_pred hhhhhhHHHHHHHHHhHHHhhh
Q 005373 361 EEVDDERKMLQMAEVWREERVQ 382 (699)
Q Consensus 361 eE~EeER~MLqmAEvWREERVQ 382 (699)
.=-+.-.++|++++.--.|+-|
T Consensus 414 ~i~~lkhe~l~~~~r~y~e~q~ 435 (591)
T COG5293 414 YIGTLKHECLDLEERIYTEVQQ 435 (591)
T ss_pred HHHHHHHHHHHHHHHhhHHHHH
Confidence 1113344677877777777655
No 295
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=36.12 E-value=3e+02 Score=29.04 Aligned_cols=13 Identities=46% Similarity=0.572 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 005373 321 YEKERKERELIEE 333 (699)
Q Consensus 321 lE~ERKaRellE~ 333 (699)
+|-+|+.=.++|.
T Consensus 214 ie~erk~l~~lE~ 226 (230)
T cd07625 214 IEYERKKLSLLER 226 (230)
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444443
No 296
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=36.03 E-value=7.5e+02 Score=28.74 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHH---hhhccHHHHHHHHH
Q 005373 326 KERELIEEVCDELAK---EIGEDKAEVEALKR 354 (699)
Q Consensus 326 KaRellE~vCdELAk---eI~edkaEVe~LKr 354 (699)
.+...|++++.+|.. .+.-|.++++.+..
T Consensus 277 ~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~ 308 (563)
T TIGR00634 277 NALTEVEEATRELQNYLDELEFDPERLNEIEE 308 (563)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 344555566666555 34444444444433
No 297
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=35.97 E-value=2.6e+02 Score=33.26 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=19.4
Q ss_pred HhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 005373 291 KNRQRIEIVNSKLVNELADA----KVSAKRYMQDYEKERK 326 (699)
Q Consensus 291 k~Rkr~E~ln~KL~~ELae~----Kss~~~a~kelE~ERK 326 (699)
++|+..|.++.+-.+||.+. +..+...-+.||.+.+
T Consensus 464 kL~~E~e~~q~~~~~~l~~~~~~~~~em~~~r~tlE~k~~ 503 (588)
T KOG3612|consen 464 KLRQEFEELQQTSRRELPVPLRNFELEMAEMRKTLEQKHA 503 (588)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHH
Confidence 56666666666666666443 3333344455555443
No 298
>PF09636 XkdW: XkdW protein; InterPro: IPR019094 This entry includes the phage SPbeta protein YorD, the function of which is not known, It also contains the protein XkdW (P54342 from SWISSPROT) from the Phage-like element PBSX in Bacillus subtilis. XkdW is approximately 100 residues long and contains two alpha helices and two beta strands, and is probably monomeric. XkdW is expressed in bacteria but is probably viral in origin. Its function is unknown. PBSX, a defective prophage of B. subtilis, is a chromosomally based element which encodes a non-infectious phage-like particle with bactericidal activity. PBSX is induced by agents which elicit the SOS response [].; PDB: 2HG7_A.
Probab=35.88 E-value=12 Score=35.44 Aligned_cols=39 Identities=28% Similarity=0.376 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005373 278 FIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKR 316 (699)
Q Consensus 278 ~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~ 316 (699)
.++.+-.+|..|+=.|+.+|.+|.-|++||+.+|..+-.
T Consensus 66 qle~L~qeLaqekl~rkqle~~~~~Lg~ela~~kLe~l~ 104 (108)
T PF09636_consen 66 QLELLGQELAQEKLARKQLEELINNLGNELANLKLELLS 104 (108)
T ss_dssp ---------------------------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777889999999999999999999999999876543
No 299
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.38 E-value=8.1e+02 Score=28.94 Aligned_cols=112 Identities=22% Similarity=0.260 Sum_probs=63.1
Q ss_pred HHHHH-HHHHHHHHHHhhhHHHHH---HHHHhhHHHHH---------H--hhhhHHHH-HHHHHHHHHHHHHHHHHhhhh
Q 005373 232 VEQAR-TRIQELETERRSSKKKLE---HFLRKVSEEKA---------A--WRSREHEK-IRAFIDDLKAEISRERKNRQR 295 (699)
Q Consensus 232 L~~Ar-~rI~eL~~E~~s~k~eie---~l~KqlaEEK~---------a--wKskE~ek-i~a~i~slk~ELe~ERk~Rkr 295 (699)
++--+ .+|++|+++-++.-.+++ .+-++|-.|-. + .+.||-.. |+-.=++|..=|++=|.+++.
T Consensus 339 ~e~~e~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq 418 (521)
T KOG1937|consen 339 TEDEEIRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQ 418 (521)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 788888888777666665 44444433311 1 11222111 122224555557888999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhc
Q 005373 296 IEIVNSKLVNELADAK-VSAKRYMQDYEKERKERELI---EEVCDELAKEIGE 344 (699)
Q Consensus 296 ~E~ln~KL~~ELae~K-ss~~~a~kelE~ERKaRell---E~vCdELAkeI~e 344 (699)
.+++..+|-+-.+=+- .-|..+.+|. -=|++=+++ -..|.||..-|.+
T Consensus 419 ~ns~se~L~Rsfavtdellf~sakhdd-hvR~aykllt~iH~nc~ei~E~i~~ 470 (521)
T KOG1937|consen 419 ENSESEALNRSFAVTDELLFMSAKHDD-HVRLAYKLLTRIHLNCMEILEMIRE 470 (521)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccCH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888888877666443 3344444443 234555554 4458887766644
No 300
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=34.72 E-value=4.2e+02 Score=28.05 Aligned_cols=59 Identities=20% Similarity=0.273 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHH
Q 005373 296 IEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKR 354 (699)
Q Consensus 296 ~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKr 354 (699)
+|.-|.++..++.-.+..+.+--++||+..+....|.+-.+++-++.....+|-..|..
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~ 207 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQE 207 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34455666666666666666666777777777777777777777777666665555543
No 301
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=34.45 E-value=4.9e+02 Score=26.84 Aligned_cols=34 Identities=26% Similarity=0.456 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLR 258 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~K 258 (699)
+..|+.+|...+.+|.++-.+|+..+.++-.=++
T Consensus 145 ~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~ 178 (221)
T PF05700_consen 145 LKRLEKELAKLKKEIEEVNRERKRRQEEAGEELR 178 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4555555555555555555555544444333333
No 302
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=34.27 E-value=6.2e+02 Score=31.45 Aligned_cols=97 Identities=23% Similarity=0.228 Sum_probs=53.5
Q ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 254 EHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEE 333 (699)
Q Consensus 254 e~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~ 333 (699)
+..+.++-||..+.-.++..++-....+++.++-.+..+--..+. ..|..+|++-|..+.+.-.+.|+=.+.+-++|.
T Consensus 492 ~~~l~~llee~~~~~~~~~~~~l~~~~~~k~~~~~q~~~~~~~~~--~~~~~~l~~kke~i~q~re~~~~~~k~~l~~e~ 569 (809)
T KOG0247|consen 492 KETLDQLLEELEKRILLRTKEILQNNKSLKEKECRQKLMNAQLES--QMLSSQLNDKKEQIEQLRDEIERLKKENLTTEY 569 (809)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 334445555555555555556666666777666666555544444 677788887777777765555554444444443
Q ss_pred HHHHHHHhhhccHHHHHHHHH
Q 005373 334 VCDELAKEIGEDKAEVEALKR 354 (699)
Q Consensus 334 vCdELAkeI~edkaEVe~LKr 354 (699)
=-+=+-.. +++.+++.|..
T Consensus 570 ~~~i~E~~--~~~~~i~~l~~ 588 (809)
T KOG0247|consen 570 SIEILEST--EYEEEIEALDQ 588 (809)
T ss_pred hhhhhhcc--hhhhhhHHHHH
Confidence 21111111 45555555544
No 303
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=34.20 E-value=1.1e+02 Score=36.98 Aligned_cols=49 Identities=20% Similarity=0.369 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 005373 236 RTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKN 292 (699)
Q Consensus 236 r~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~ 292 (699)
|+++..|++|++...+. +..+..+-|. -...|-++++.+||. ||||||-
T Consensus 3 RdkL~~Lq~ek~~E~~~---l~~~~~~lk~-~~~~el~~Lk~~vqk----LEDEKKF 51 (654)
T PF09798_consen 3 RDKLELLQQEKQKERQA---LKSSVEELKE-SHEEELNKLKSEVQK----LEDEKKF 51 (654)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHH-HhHHHHHHHHHHHHH----HHHHHHH
Confidence 56777888777655443 3333333332 233456677777776 6788763
No 304
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=34.14 E-value=1.1e+03 Score=30.28 Aligned_cols=129 Identities=19% Similarity=0.247 Sum_probs=76.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhh--
Q 005373 288 RERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDD-- 365 (699)
Q Consensus 288 ~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~reE~Ee-- 365 (699)
-||-+..+.+.+-+||..||++ +|++-|++-+.|-.+|-.-+-. ++-.|-.++. +.|+..
T Consensus 922 iEk~lks~~d~~~~rl~e~la~-------------~e~~~r~~~~qi~q~ltq~~s~---~~~~~~e~ti--~~El~~tv 983 (1283)
T KOG1916|consen 922 IEKSLKSNADALWARLQEELAK-------------NEKALRDLQQQITQQLTQFLSK---ELNAMFEKTI--KKELAKTV 983 (1283)
T ss_pred HHHHHHhhHHHHHHHHHHHHHh-------------hhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHH--HHHHHhhc
Confidence 4777888888888999999974 5666666666666655544321 2222222222 234433
Q ss_pred ----hHHHHHHHHHhHHHhhhhhhhhhhhhhHHHhHHHHHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHHHhhccc
Q 005373 366 ----ERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSSRSINP-DIQEMKEAEMLRQAAASVNI 437 (699)
Q Consensus 366 ----ER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~eLE~FL~sk~~~~-d~~~~r~ae~~rqs~eSv~~ 437 (699)
-|.|-+|++----+=+| ||..-.-...|..++|.|-..=+.||-++-.... ...-+.+| +|.+++|+=|
T Consensus 984 ~P~v~rs~~p~~~q~~~s~it-kl~~~eg~~kenI~ql~KSknl~dtvar~i~~~~Qtsg~lQ~a--~resm~Ssvi 1057 (1283)
T KOG1916|consen 984 GPCVARSVEPVIEQTVSSAIT-KLFQREGIGKENINQLLKSKNLEDTVARQIQAQFQTSGPLQEA--LRESMESSVI 1057 (1283)
T ss_pred chhhhhhhHHHHHHHHHHHHH-HHHHhhchHHHHHHHHHhhccHHHHHHHHHHHHHhccchHHHH--HHHHhhhhcc
Confidence 67888888866666665 5555544456777888887775555555421111 00114444 7888888765
No 305
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.14 E-value=1.1e+03 Score=29.95 Aligned_cols=88 Identities=16% Similarity=0.203 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHH------hhhhHHHHHHHHHHHHHHHHHHHH-------Hhh
Q 005373 227 ALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAA------WRSREHEKIRAFIDDLKAEISRER-------KNR 293 (699)
Q Consensus 227 aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~a------wKskE~eki~a~i~slk~ELe~ER-------k~R 293 (699)
--..+|+.-+...+.|+++.......+....+.+.-|..- -...+|-....-+..||.+|.-=+ ..+
T Consensus 650 k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~ 729 (970)
T KOG0946|consen 650 KYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGA 729 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHH
Confidence 3345555555556666555544443333333322222221 122244445555666666665111 113
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 005373 294 QRIEIVNSKLVNELADAKVSA 314 (699)
Q Consensus 294 kr~E~ln~KL~~ELae~Kss~ 314 (699)
.-.+..|.-|+.-+.|.|+-+
T Consensus 730 e~~~t~~eel~a~~~e~k~l~ 750 (970)
T KOG0946|consen 730 EASKTQNEELNAALSENKKLE 750 (970)
T ss_pred HhccCChHHHHHHHHHHHHHH
Confidence 334455555555555555433
No 306
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=34.01 E-value=5.8e+02 Score=26.78 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=21.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhH----HHHHHHHHh
Q 005373 220 SAVSMVAALEAEVEQARTRIQELETERRSSK----KKLEHFLRK 259 (699)
Q Consensus 220 s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k----~eie~l~Kq 259 (699)
+...|++--..||+-- ..|++..++|-... +.+..|.++
T Consensus 6 ~h~~l~~~~~~ei~lL-e~i~~F~reRa~iE~EYA~~L~~L~kq 48 (237)
T cd07657 6 GHEALLKRQDAELRLL-ETMKKYMAKRAKSDREYASTLGSLANQ 48 (237)
T ss_pred hHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345555555666554 34666666664433 445555555
No 307
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=33.75 E-value=4.5e+02 Score=29.66 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=29.4
Q ss_pred Hhhhhcc-cccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 005373 207 QIYSHMK-HLDQQVSAVSMVAALEAEVEQARTRIQELET 244 (699)
Q Consensus 207 kvlnri~-leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~ 244 (699)
.+-|.+. +++|---.|+||+.|+.||-.-+++...+..
T Consensus 206 r~kngvfdp~~qaevq~~Lvs~Le~eL~~iqaqL~tvks 244 (372)
T COG3524 206 RIKNGVFDPKAQAEVQMSLVSKLEDELIVIQAQLDTVKS 244 (372)
T ss_pred HhhcCccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666 6777777899999999999988887766654
No 308
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=33.71 E-value=1.3e+03 Score=30.62 Aligned_cols=100 Identities=10% Similarity=0.166 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhh-----------------hhhHHHHHHHHH
Q 005373 313 SAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEV-----------------DDERKMLQMAEV 375 (699)
Q Consensus 313 s~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~reE~-----------------EeER~MLqmAEv 375 (699)
.+-.++.++|++.+.+...+.+..+.-..|.++...++..-.--....... +..-++.-+.+-
T Consensus 914 ~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l~~~~~~~~~~~~~~~~~~~~~~l~~~~e~l~~~~~~~~~~~~~ 993 (1294)
T KOG0962|consen 914 ELEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLLHQIYKLNECFEQYGFDDLRIAQLSESEEHLEERDNEVNEIKQK 993 (1294)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888899998888777777777777777776665422211111111 112233334444
Q ss_pred hHHHhhhhhhhhhhhhhHHHhHHHHHHHHHHHHHHhh
Q 005373 376 WREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSS 412 (699)
Q Consensus 376 WREERVQMKL~dAk~~leeK~s~ldkL~~eLE~FL~s 412 (699)
.|.-..+-++.++-+.+-.-.+.+..+.-|+..|+.-
T Consensus 994 l~~~~~~er~l~dnl~~~~l~~q~~e~~re~~~ld~Q 1030 (1294)
T KOG0962|consen 994 IRNQYQRERNLKDNLTLRNLERKLKELERELSELDKQ 1030 (1294)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566666666655556666666666666544
No 309
>PRK14155 heat shock protein GrpE; Provisional
Probab=33.57 E-value=5.8e+02 Score=26.68 Aligned_cols=92 Identities=16% Similarity=0.124 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 005373 226 AALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVN 305 (699)
Q Consensus 226 ~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ 305 (699)
..|..+|+..+.++.+|...-....-+++.+.|+...|+...+. -...++++
T Consensus 16 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~----------------------------~a~~~~~~ 67 (208)
T PRK14155 16 DDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARA----------------------------YAIQKFAR 67 (208)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHH
Confidence 45666777777777777655555566666666666555543333 23445555
Q ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhhcc
Q 005373 306 ELADAKVSAKRYMQDYEK------ERKERELIEEVCDELAKEIGED 345 (699)
Q Consensus 306 ELae~Kss~~~a~kelE~------ERKaRellE~vCdELAkeI~ed 345 (699)
+|..+--.|.+|+.-... -..-.+=|+-+.+.|-+-...+
T Consensus 68 ~LLpV~DnLerAl~~~~~~~~~~~~~~i~~Gvemi~k~~~~~L~k~ 113 (208)
T PRK14155 68 DLLGAADNLGRATAASPKDSADPAVKNFIIGVEMTEKELLGAFERN 113 (208)
T ss_pred HHhhHHhhHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHC
Confidence 666555555555543321 1223344555566666655544
No 310
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=33.56 E-value=5.7e+02 Score=26.61 Aligned_cols=82 Identities=20% Similarity=0.249 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHH
Q 005373 273 EKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELA-DAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEA 351 (699)
Q Consensus 273 eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELa-e~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~ 351 (699)
.-+..+.+.|+.|.+.. -.+|..|+.-|. ++..-+..+.+++.++||. ++.--+.+.+-.......++.
T Consensus 58 Gtl~~aw~~~~~e~e~~-------a~~H~~la~~L~~ev~~~l~~~~~~~~k~rK~---~~~~~~k~qk~~~~~~~~~~k 127 (239)
T cd07658 58 GTLSSAWTCVAEEMESE-------ADIHRNLGSALTEEAIKPLRQVLDEQHKTRKP---VENEVDKAAKLLTDWRSEQIK 127 (239)
T ss_pred CcHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888887765 345666666665 5666777777777666553 444444444444444455555
Q ss_pred HHHhhHHHHhhhh
Q 005373 352 LKRESMKLREEVD 364 (699)
Q Consensus 352 LKres~k~reE~E 364 (699)
.|+.....+.|.|
T Consensus 128 ~kk~y~~~~kE~e 140 (239)
T cd07658 128 VKKKLHGLARENE 140 (239)
T ss_pred HHHHHHHHHHHHH
Confidence 5665555555543
No 311
>PRK14163 heat shock protein GrpE; Provisional
Probab=33.54 E-value=6e+02 Score=26.84 Aligned_cols=61 Identities=15% Similarity=0.284 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 005373 226 AALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEI 286 (699)
Q Consensus 226 ~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~EL 286 (699)
..|+.+|+..+..+.+|...-.....+++.|.|++..|+..-+.--.+++-..|-.+-+.|
T Consensus 43 ~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpVlDnL 103 (214)
T PRK14163 43 AGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELLPVLDDV 103 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHH
Confidence 4566667767777777766556666677777777777766544444444444433343333
No 312
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=33.52 E-value=1.2e+03 Score=30.18 Aligned_cols=51 Identities=22% Similarity=0.258 Sum_probs=29.1
Q ss_pred HhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHHhH-----HHhhhhhhhhhhh
Q 005373 340 KEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWR-----EERVQMKLVDAKV 390 (699)
Q Consensus 340 keI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWR-----EERVQMKL~dAk~ 390 (699)
+++.+.+.+.|.||.+..+-+..++.-++|+-=|..=+ =|+-|-++.++..
T Consensus 318 ~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~~~e~~~~~~~ei~~ 373 (1072)
T KOG0979|consen 318 DEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQETEDPENPVEEDQEIMK 373 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccccchhHHHHHH
Confidence 34555666667777777776777777777764333211 2344555545444
No 313
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=33.44 E-value=9.3e+02 Score=29.04 Aligned_cols=26 Identities=35% Similarity=0.409 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005373 223 SMVAALEAEVEQARTRIQELETERRS 248 (699)
Q Consensus 223 Slv~aLk~EL~~Ar~rI~eL~~E~~s 248 (699)
.-|..|+.|.++.-.+|.+|+..-.-
T Consensus 36 eev~~L~eEk~~~~~~V~eLE~sL~e 61 (617)
T PF15070_consen 36 EEVRTLKEEKEHDISRVQELERSLSE 61 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44778888888888888888875433
No 314
>PHA00727 hypothetical protein
Probab=33.39 E-value=1.8e+02 Score=30.84 Aligned_cols=64 Identities=30% Similarity=0.502 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHH---Hhh---hhHHHHHHHHHHHHHHHHHHHHHhh
Q 005373 222 VSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKA---AWR---SREHEKIRAFIDDLKAEISRERKNR 293 (699)
Q Consensus 222 ~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~---awK---skE~eki~a~i~slk~ELe~ERk~R 293 (699)
--||++-+.||..|+. +.||.+ .-+..-+|+++-|. .|| .+|-|-..+..+.+++||+.-+|.-
T Consensus 4 gklvs~~eeelrkaqs-leelkq-------kyee~qkqi~dgk~lkrlykvyekrefelk~~qf~qlkael~kkkkk~ 73 (278)
T PHA00727 4 GKLVSAWEEELRKAQS-LEELKQ-------KYEEAQKQIADGKTLKRLYKVYEKREFELKKQQFEQLKAELSKKKKKF 73 (278)
T ss_pred chhHHHHHHHHHhccc-HHHHHH-------HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3478999999999986 455544 33444566666554 233 4566777788888899988765543
No 315
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=33.17 E-value=7e+02 Score=27.55 Aligned_cols=19 Identities=11% Similarity=0.228 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005373 226 AALEAEVEQARTRIQELET 244 (699)
Q Consensus 226 ~aLk~EL~~Ar~rI~eL~~ 244 (699)
..++..|..+++++..|.+
T Consensus 99 ~~~~~~l~~~~~q~~~l~~ 117 (421)
T TIGR03794 99 QESYQKLTQLQEQLEEVRN 117 (421)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555544
No 316
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=32.98 E-value=7e+02 Score=27.43 Aligned_cols=63 Identities=14% Similarity=0.280 Sum_probs=36.2
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 265 AAWRSREHEKIRAFIDDLKAEISRER-KNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELI 331 (699)
Q Consensus 265 ~awKskE~eki~a~i~slk~ELe~ER-k~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRell 331 (699)
--|+.+-.+-++..++.-.+.|..+. .+.++.+.+| .+.-+|.+-. .....++...++...-|
T Consensus 135 YeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~-~~~~~l~~~~---~~L~~e~~~L~~~~~e~ 198 (312)
T smart00787 135 YEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLN-SIKPKLRDRK---DALEEELRQLKQLEDEL 198 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---HHHHHHHHHHHHhHHHH
Confidence 46899888888888777777775543 4556666655 4444444433 33334444444444433
No 317
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=32.90 E-value=9e+02 Score=30.96 Aligned_cols=51 Identities=27% Similarity=0.386 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccHH----HHHHHHHhhHHHHhhhhhhHHHH
Q 005373 320 DYEKERKERELIEEVCDELAKEIGEDKA----EVEALKRESMKLREEVDDERKML 370 (699)
Q Consensus 320 elE~ERKaRellE~vCdELAkeI~edka----EVe~LKres~k~reE~EeER~ML 370 (699)
..|+||+-|||....-.|+..+|...+. .-+.|......+++-+.++-.-|
T Consensus 1115 K~e~er~~rE~n~s~i~~~V~e~krL~~~~~k~~e~L~k~~~~~leql~e~~kal 1169 (1189)
T KOG1265|consen 1115 KAERERRKRELNSSNIKEFVEERKRLAEKQSKRQEQLVKKHLEVLEQLAEEEKAL 1169 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3466677777777766666666654332 23444444444445554443333
No 318
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=32.88 E-value=6.3e+02 Score=26.91 Aligned_cols=15 Identities=33% Similarity=0.585 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHH
Q 005373 277 AFIDDLKAEISRERK 291 (699)
Q Consensus 277 a~i~slk~ELe~ERk 291 (699)
.-+..|+..|+.||+
T Consensus 243 e~~~~L~ekme~e~~ 257 (297)
T PF02841_consen 243 EHIKQLKEKMEEERE 257 (297)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555566666665
No 319
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=32.77 E-value=1.3e+02 Score=30.71 Aligned_cols=29 Identities=38% Similarity=0.635 Sum_probs=15.7
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHhhHHHH
Q 005373 332 EEVCDELAKEIGEDKAEVEALKRESMKLR 360 (699)
Q Consensus 332 E~vCdELAkeI~edkaEVe~LKres~k~r 360 (699)
++.|.|+.++..+..++...+-++-.+++
T Consensus 116 ~N~C~e~~~~~~~~~~~~~~~~~~G~~~r 144 (176)
T PF12999_consen 116 PNTCAELGKEYREELEEEEEIYKEGLKIR 144 (176)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777666555555544444444333
No 320
>PF14992 TMCO5: TMCO5 family
Probab=32.56 E-value=3e+02 Score=30.15 Aligned_cols=41 Identities=24% Similarity=0.554 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHHhHHHhhhhh
Q 005373 331 IEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMK 384 (699)
Q Consensus 331 lE~vCdELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQMK 384 (699)
+-++|..=|.+|.+||..++. +|+++.|+.+--.| ..+||.
T Consensus 142 v~~l~eDq~~~i~klkE~L~r-----------mE~ekE~~lLe~el--~k~q~~ 182 (280)
T PF14992_consen 142 VHQLCEDQANEIKKLKEKLRR-----------MEEEKEMLLLEKEL--SKYQMQ 182 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH--HHHhch
Confidence 445677777788888776644 44566666655443 245554
No 321
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.55 E-value=9.9e+02 Score=29.08 Aligned_cols=101 Identities=19% Similarity=0.303 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 005373 230 AEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELAD 309 (699)
Q Consensus 230 ~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae 309 (699)
.|=..-..+..||+++-...+.+||.+-.-|+.=.. .|.++ .++.++.|--+=+.+-+--.-+..-+.+
T Consensus 43 eeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s-----~hkk~------~~~g~e~EesLLqESaakE~~yl~kI~e 111 (772)
T KOG0999|consen 43 EEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRS-----QHKKV------ARDGEEREESLLQESAAKEEYYLQKILE 111 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHh------hccchhhHHHHHHHHHHhHHHHHHHHHH
Confidence 333444556777777777777777776655554332 12222 2445555555444443333334444566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005373 310 AKVSAKRYMQDYEKERKERELIEEVCDELAKE 341 (699)
Q Consensus 310 ~Kss~~~a~kelE~ERKaRellE~vCdELAke 341 (699)
+..-+++.-++|.+-+-.++.|+.|..+|-.-
T Consensus 112 leneLKq~r~el~~~q~E~erl~~~~sd~~e~ 143 (772)
T KOG0999|consen 112 LENELKQLRQELTNVQEENERLEKVHSDLKES 143 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 77777888888888888888888887776543
No 322
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=32.50 E-value=6.3e+02 Score=26.75 Aligned_cols=12 Identities=17% Similarity=0.063 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 005373 306 ELADAKVSAKRY 317 (699)
Q Consensus 306 ELae~Kss~~~a 317 (699)
|+..+|..+...
T Consensus 89 ey~~Lk~~in~~ 100 (230)
T PF10146_consen 89 EYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHH
Confidence 554444333333
No 323
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=32.39 E-value=1.7e+02 Score=24.36 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 005373 223 SMVAALEAEVEQARTRIQELETERRSSKKKLEHF 256 (699)
Q Consensus 223 Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l 256 (699)
.-+..++.|+...+.+|.+|.++....+.+++.|
T Consensus 17 ~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 17 SRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677777777777777777777777776666
No 324
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=32.25 E-value=4.1e+02 Score=31.46 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 005373 225 VAALEAEVEQARTRIQELETERRS 248 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s 248 (699)
.-+|...+.++..+|-.|++|+.-
T Consensus 304 ~e~L~qqV~qs~EKIa~LEqEKEH 327 (518)
T PF10212_consen 304 REGLAQQVQQSQEKIAKLEQEKEH 327 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888999999999999987644
No 325
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=32.23 E-value=1.2e+03 Score=30.10 Aligned_cols=103 Identities=15% Similarity=0.122 Sum_probs=71.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 005373 219 VSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEI 298 (699)
Q Consensus 219 ~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ 298 (699)
.++-.+..-++..+|..+.+|..|+++.+..+..|..-..+-+|....--.+..++....-..++++++.=+++-+++..
T Consensus 197 ~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~~~~~~~~i~~~~~~N~~Ls~~L~~ 276 (1109)
T PRK10929 197 LSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAEQSGDLPKSIVAQFKINRELSQALNQ 276 (1109)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHHH
Confidence 35556677777778888899999999999888888888888888766444443344434445588899988888888877
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHH
Q 005373 299 VNSKL---VNELADAKVSAKRYMQDY 321 (699)
Q Consensus 299 ln~KL---~~ELae~Kss~~~a~kel 321 (699)
...++ ..+-..+|.-+.+..+.+
T Consensus 277 ~t~~~n~l~~~~~~~~~~l~~~~q~~ 302 (1109)
T PRK10929 277 QAQRMDLIASQQRQAASQTLQVRQAL 302 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77764 444445554444444433
No 326
>COG2317 Zn-dependent carboxypeptidase [Amino acid transport and metabolism]
Probab=32.14 E-value=3.9e+02 Score=31.49 Aligned_cols=109 Identities=28% Similarity=0.377 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHhhhccHHH-HHHHHHhhHHHH---hhhhhhH--HHHHHHHHhHHHhhhhhhhhhhhhhHHHhHHHHH
Q 005373 328 RELIEEVCDELAKEIGEDKAE-VEALKRESMKLR---EEVDDER--KMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNK 401 (699)
Q Consensus 328 RellE~vCdELAkeI~edkaE-Ve~LKres~k~r---eE~EeER--~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldk 401 (699)
.++|+.+-.|. .+.|+++- |++|+|+-.++. +|+-+|- .--+-.-+||+-|-+-...--+- -...+-.
T Consensus 64 ~~ll~~a~~e~--~L~e~~~~~vre~~r~~~~~~~iP~e~~~e~s~~~s~a~~aWreAr~knDf~~F~p----~Lekiv~ 137 (497)
T COG2317 64 AELLEKAEEEK--DLSEIEAGVVRELKREYEKAKKIPEELVKEYSKLTSKAEHAWREAREKNDFSIFKP----YLEKIVE 137 (497)
T ss_pred HHHHHHhhhcc--CccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhcccHhhhhH----HHHHHHH
Confidence 34444444443 34444444 666666655543 3332222 22234457998886654443222 2223333
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHHHhhcccccccccccCCC-CCCCcchhhhhccCC
Q 005373 402 LVAELEAFLSSRSINPDIQEMKEAEMLRQAAASVNIQEIKEFTYEPP-NPDDIFSVFEDVNFG 463 (699)
Q Consensus 402 L~~eLE~FL~sk~~~~d~~~~r~ae~~rqs~eSv~~~~ike~ty~p~-~~dDi~si~eel~~~ 463 (699)
|.-+.-.++.-.. .. =+| -|+ -|+|- ..+|++.||++|+..
T Consensus 138 l~re~A~~~~~~~-~p-----Yda----------Lld-----~yEpG~t~~~i~~vF~~Lk~~ 179 (497)
T COG2317 138 LKREFAEYRGYEE-HP-----YDA----------LLD-----LYEPGLTVRDVDRVFAELKKE 179 (497)
T ss_pred HHHHHHHhccccc-Cc-----HHH----------HHH-----hhcCCCcHHHHHHHHHHHHHH
Confidence 4444444433222 11 111 122 48887 779999999999765
No 327
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=31.92 E-value=5.4e+02 Score=30.50 Aligned_cols=46 Identities=26% Similarity=0.341 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 280 DDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIE 332 (699)
Q Consensus 280 ~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE 332 (699)
..|+-|+-+||.+| |+|.+-|+.|+.-- ..+-|.+.+|||.|..+.
T Consensus 531 ~ELkmd~lrerelr---eslekql~~ErklR----~~~qkr~kkEkk~k~k~q 576 (641)
T KOG3915|consen 531 TELKMDFLRERELR---ESLEKQLAMERKLR----AIVQKRLKKEKKAKRKLQ 576 (641)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 35667777888887 56667787776432 233455666777765543
No 328
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=31.81 E-value=4.7e+02 Score=25.10 Aligned_cols=59 Identities=8% Similarity=0.065 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHH
Q 005373 226 AALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKA 284 (699)
Q Consensus 226 ~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ 284 (699)
+-+..=|+.=+..|.+-+.+-...+.+++.+.++..+.-...+..-+..+..++...+.
T Consensus 30 kPi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~ 88 (141)
T PRK08476 30 KPLLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIRQKAIAKAKE 88 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444456666777777777777777777777766666555554444444444443333
No 329
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=31.79 E-value=5.8e+02 Score=26.19 Aligned_cols=112 Identities=22% Similarity=0.365 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHH-----------------HHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 005373 223 SMVAALEAEVEQARTRIQELETERRSSKK-----------------KLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAE 285 (699)
Q Consensus 223 Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~-----------------eie~l~KqlaEEK~awKskE~eki~a~i~slk~E 285 (699)
-=|.-|+.+|..++..+.+|..|.+..+. ++..+|.+..+|-..|+.+=+. .. ..+
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~-~q------~~~ 84 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRK-SQ------EQE 84 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-HH------HHH
Confidence 34788999999999999999888765442 3334455555554444332111 00 001
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHh
Q 005373 286 ISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRE 355 (699)
Q Consensus 286 Le~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKre 355 (699)
-+.||+++. .-.||-.++..+ +.|++=-..+.|.| +++|...+...+++++.-.++
T Consensus 85 r~~~~klk~--------~~~el~k~~~~l----~~L~~L~~dknL~e--ReeL~~kL~~~~~~l~~~~~k 140 (194)
T PF15619_consen 85 RELERKLKD--------KDEELLKTKDEL----KHLKKLSEDKNLAE--REELQRKLSQLEQKLQEKEKK 140 (194)
T ss_pred HHHHHHHHH--------HHHHHHHHHHHH----HHHHHHHHcCCchh--HHHHHHHHHHHHHHHHHHHHH
Confidence 112222222 222333233222 23333344556666 688888877777776664443
No 330
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=31.75 E-value=6.4e+02 Score=26.66 Aligned_cols=77 Identities=10% Similarity=0.182 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSR-EHEKIRAFIDDLKAEISRERKNRQRIEIVNSKL 303 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKsk-E~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL 303 (699)
+.+.|.=|..=..-.+++.+-++..+ .|+...+|.-++++ -.+|+..++++|.+--..|..+.++.+.+-.-|
T Consensus 114 ~~~vKealtnR~~~~re~~qAq~~~~------~K~~~~~rlk~s~~i~~~KvdeA~~~l~eA~~~e~~l~~k~~rIs~nm 187 (230)
T cd07625 114 AYVVKEALTNRHLLMRELIQAQQNTK------SKQEAARRLKAKRDINPLKVDEAIRQLEEATKHEHDLSLKLKRITGNM 187 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444455554444444 45666777766544 256888888888776666666666666665555
Q ss_pred HHHH
Q 005373 304 VNEL 307 (699)
Q Consensus 304 ~~EL 307 (699)
-.|+
T Consensus 188 ~~E~ 191 (230)
T cd07625 188 LIER 191 (230)
T ss_pred HHHH
Confidence 5554
No 331
>PRK14148 heat shock protein GrpE; Provisional
Probab=31.72 E-value=6e+02 Score=26.33 Aligned_cols=68 Identities=12% Similarity=0.199 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLV 304 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~ 304 (699)
+.+|+.+|...+..+.+|...-....-+++.+.|+...|+...+. -.+.+|+
T Consensus 42 ~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~----------------------------~a~~~~~ 93 (195)
T PRK14148 42 LERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARK----------------------------FGIEKFA 93 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHH
Confidence 555666666666666666554455555555555555544443322 3445666
Q ss_pred HHHHHHHHHHHHHHHH
Q 005373 305 NELADAKVSAKRYMQD 320 (699)
Q Consensus 305 ~ELae~Kss~~~a~ke 320 (699)
++|..+--.|.+|+.-
T Consensus 94 ~~LLpV~DnlerAl~~ 109 (195)
T PRK14148 94 KELLPVIDSIEQALKH 109 (195)
T ss_pred HHHhhHHhHHHHHHhc
Confidence 6666666666666543
No 332
>PRK14160 heat shock protein GrpE; Provisional
Probab=31.72 E-value=6.3e+02 Score=26.56 Aligned_cols=21 Identities=14% Similarity=0.109 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005373 299 VNSKLVNELADAKVSAKRYMQ 319 (699)
Q Consensus 299 ln~KL~~ELae~Kss~~~a~k 319 (699)
...+++++|..+--.|.+|+.
T Consensus 109 a~e~~~~~LLpVlDnLerAl~ 129 (211)
T PRK14160 109 ACEDVLKELLPVLDNLERAAA 129 (211)
T ss_pred HHHHHHHHHhhHHhHHHHHHh
Confidence 345555555555555555543
No 333
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=31.67 E-value=4.8e+02 Score=25.19 Aligned_cols=13 Identities=31% Similarity=0.529 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHH
Q 005373 233 EQARTRIQELETE 245 (699)
Q Consensus 233 ~~Ar~rI~eL~~E 245 (699)
..|+..+.+++.+
T Consensus 4 ~eA~~ka~~I~~e 16 (198)
T PF01991_consen 4 EEAQEKAEEIIAE 16 (198)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555554
No 334
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=31.66 E-value=6.5e+02 Score=26.65 Aligned_cols=9 Identities=33% Similarity=0.420 Sum_probs=5.9
Q ss_pred HHHHHHHHH
Q 005373 283 KAEISRERK 291 (699)
Q Consensus 283 k~ELe~ERk 291 (699)
+++|..||.
T Consensus 41 ~~~L~~Er~ 49 (230)
T PF10146_consen 41 MEELLQERM 49 (230)
T ss_pred HHHHHHHHH
Confidence 556777775
No 335
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=31.64 E-value=1.4e+02 Score=32.03 Aligned_cols=52 Identities=27% Similarity=0.497 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhh-hhHHHHHH
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWR-SREHEKIR 276 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awK-skE~eki~ 276 (699)
+.-.+.|+.+....|+.|..|.....+-.+..+++|.++|..|- +...+++.
T Consensus 48 ~~~~~k~~~~l~~~i~~L~~E~~~h~~~~~~v~~~L~~~k~~wf~~~~~~~i~ 100 (298)
T PF11262_consen 48 ISKKKKEKERLKNLIDKLPEELKKHQEHVEKVKKRLQEEKDSWFSSKDPEKIE 100 (298)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCChhhHH
Confidence 45567899999999999999999999999999999999999998 44445554
No 336
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=31.49 E-value=7.4e+02 Score=27.27 Aligned_cols=31 Identities=6% Similarity=0.101 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 005373 221 AVSMVAALEAEVEQARTRIQELETERRSSKK 251 (699)
Q Consensus 221 ~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~ 251 (699)
.-..+..|..+|..++.++.+.+..-+.++.
T Consensus 169 ~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~ 199 (444)
T TIGR03017 169 AQKAALWFVQQIAALREDLARAQSKLSAYQQ 199 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667777777777777777666555544
No 337
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=31.47 E-value=6.3e+02 Score=26.48 Aligned_cols=44 Identities=23% Similarity=0.212 Sum_probs=25.2
Q ss_pred hhhHHHHHHHHHhHHHhhhhhhhhhhhhhHHHhHHHHHHHHHHHHH
Q 005373 364 DDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAF 409 (699)
Q Consensus 364 EeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~eLE~F 409 (699)
+.|..+.|. +.-..||-+ +..+.+..+++=.++...|+.|+=.|
T Consensus 141 ~~e~l~~~~-da~l~e~t~-~i~eL~~~ieEy~~~teeLR~e~s~L 184 (193)
T PF14662_consen 141 EFESLICQR-DAILSERTQ-QIEELKKTIEEYRSITEELRLEKSRL 184 (193)
T ss_pred HHHHHHHHH-HHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555554 233445554 55666666777666667777666444
No 338
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=31.45 E-value=6.1e+02 Score=26.31 Aligned_cols=58 Identities=21% Similarity=0.229 Sum_probs=31.9
Q ss_pred HHHHhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHH
Q 005373 288 RERKNRQRIEIV---NSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKA 347 (699)
Q Consensus 288 ~ERk~Rkr~E~l---n~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edka 347 (699)
.|.+.++++|.+ |.---.++.+++..+.++-.|++ |-.+.|.|+|..==-..+.+.|.
T Consensus 115 ~~~~~~~~leklk~~~~~d~~~i~eaE~~l~~a~~d~~--r~s~~l~ee~~rFe~~k~~d~K~ 175 (211)
T cd07598 115 KELKQLKQLEKLRQKNPSDRQIISQAESELQKASVDAN--RSTKELEEQMDNFEKQKIRDIKT 175 (211)
T ss_pred HHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555 21112277788888888877665 45556666665433333333333
No 339
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=31.33 E-value=6.4e+02 Score=26.47 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=8.9
Q ss_pred HHHHHHHHHhhHHHHhhh
Q 005373 346 KAEVEALKRESMKLREEV 363 (699)
Q Consensus 346 kaEVe~LKres~k~reE~ 363 (699)
..+++.++.+..+...++
T Consensus 167 ~~eleK~~~k~~k~~~~~ 184 (258)
T cd07655 167 PDQVKKLQDKVEKCKQEV 184 (258)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555444333
No 340
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=31.23 E-value=1.3e+03 Score=29.89 Aligned_cols=43 Identities=26% Similarity=0.403 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHH
Q 005373 223 SMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKA 265 (699)
Q Consensus 223 Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~ 265 (699)
-++.+|++|++--+..+++|+...+..+++++..-+++...+.
T Consensus 636 e~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~ 678 (1072)
T KOG0979|consen 636 EEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKR 678 (1072)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888999888888999988888888888888777666554
No 341
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.22 E-value=2.7e+02 Score=25.15 Aligned_cols=63 Identities=21% Similarity=0.439 Sum_probs=42.9
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH---HhhHHHHHHhhhhHHHHHHHHHH
Q 005373 214 HLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFL---RKVSEEKAAWRSREHEKIRAFID 280 (699)
Q Consensus 214 leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~---KqlaEEK~awKskE~eki~a~i~ 280 (699)
|+..-.-.|--|.-|++|++.-.-.-+.|.+|.+..++..+.|. .||.+|-..| ||++++.+-
T Consensus 9 LE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~W----QerlrsLLG 74 (79)
T COG3074 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGW----QERLRALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHh
Confidence 34333334556778889888888777888888776666555554 5788888888 466766554
No 342
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=31.20 E-value=6.4e+02 Score=26.45 Aligned_cols=108 Identities=16% Similarity=0.226 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHHhHHH
Q 005373 306 ELADAKVSAKRYMQDYEKERKERE------LIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREE 379 (699)
Q Consensus 306 ELae~Kss~~~a~kelE~ERKaRe------llE~vCdELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREE 379 (699)
+++-+..+|...|+|+--+=..-. .+...=.||++-|++...+-+.|..+ -++.|++-=+-|++|
T Consensus 34 ~~~~a~~~Fa~~L~~f~~~~~gd~~~dde~~i~~sl~ef~~~~~el~d~r~~L~~~---------~~~~l~~pL~~F~ke 104 (207)
T cd07635 34 SLSAAQRKFAHSLRDFKFEFIGDAETDDERCIDASLQEFSNFLKNLEEQREIMALN---------VTETLIKPLERFRKE 104 (207)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
Confidence 455555555555555542211111 12333344555554444444443322 144566666777777
Q ss_pred hhhhhhhhhhhhhHHHhHHHHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 005373 380 RVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSSRSINPDIQEMKEAEM 427 (699)
Q Consensus 380 RVQMKL~dAk~~leeK~s~ldkL~~eLE~FL~sk~~~~d~~~~r~ae~ 427 (699)
=++ ..-|+|-.|+.- -+++-.=|+.||.....+... ++.+|..
T Consensus 105 dl~-~~Ke~KK~FdK~---se~~~~Al~K~~~ls~kkk~~-e~~EA~~ 147 (207)
T cd07635 105 QLG-AVKEEKKKFDKE---TEKNYSLLEKHLNLSAKKKEP-QLQEADV 147 (207)
T ss_pred HHH-HHHHHHHHHHHh---hhHHHHHHHHHHhccCCCCcc-HHHHHHH
Confidence 776 566777666653 344555567777664322222 5556543
No 343
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.03 E-value=7.1e+02 Score=26.94 Aligned_cols=40 Identities=18% Similarity=0.094 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005373 271 EHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRY 317 (699)
Q Consensus 271 E~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a 317 (699)
.+-+|.+-|-+.+.|||. ++..+.+|.-|+.+-|.-++..
T Consensus 87 ~q~~ieqeik~~q~elEv-------l~~n~Q~lkeE~dd~keiIs~k 126 (246)
T KOG4657|consen 87 RQMGIEQEIKATQSELEV-------LRRNLQLLKEEKDDSKEIISQK 126 (246)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhHHHHHHHH
Confidence 445566666666666654 3334555555665555555444
No 344
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=30.98 E-value=9e+02 Score=28.12 Aligned_cols=17 Identities=29% Similarity=0.671 Sum_probs=10.1
Q ss_pred ccccccccccCCCCCCC
Q 005373 436 NIQEIKEFTYEPPNPDD 452 (699)
Q Consensus 436 ~~~~ike~ty~p~~~dD 452 (699)
|+.||++.--.||.+-|
T Consensus 279 h~~~i~~kY~~~~~T~d 295 (448)
T COG1322 279 HIRDIRKKYLKPPETTD 295 (448)
T ss_pred HHHhhHHhhccCCCCCC
Confidence 66666666666664433
No 345
>PF01865 PhoU_div: Protein of unknown function DUF47; InterPro: IPR018445 This family includes prokaryotic proteins of unknown function, as well as a protein annotated as the pit accessory protein from Rhizobium meliloti (Sinorhizobium meliloti) (O30498 from SWISSPROT). However, the function of this protein is also unknown (Pit stands for Phosphate transport) [].; PDB: 2OLT_C 2IIU_C 3L39_A.
Probab=30.88 E-value=5.4e+02 Score=25.51 Aligned_cols=129 Identities=22% Similarity=0.239 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHh-----hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHH
Q 005373 231 EVEQARTRIQELETERRSSKKKLEHFLRK-----VSEEKAAWRSREHEKIRAFIDDLKAEISRERK-NRQRIEIVNSKLV 304 (699)
Q Consensus 231 EL~~Ar~rI~eL~~E~~s~k~eie~l~Kq-----laEEK~awKskE~eki~a~i~slk~ELe~ERk-~Rkr~E~ln~KL~ 304 (699)
++.....+|++|+.+-...+++|..-+-+ +.-|=..-=....|.|-..++++...|.--+- .-..+...=..|+
T Consensus 41 ~~~~~~~~i~~lE~~aD~i~~~i~~~L~~~fitP~dRedi~~L~~~lD~I~d~i~~~a~~l~~~~~~~~~~~~~~~~~l~ 120 (214)
T PF01865_consen 41 DVEELLEEIKELEHEADEIKREIREELYKSFITPFDREDILRLISSLDDIADYIEDAAKRLSLYKVEIPEELREEFQELA 120 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SS-SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHT----CCGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHH
Confidence 56666778888888777777766655555 33333444567889999999998888876441 0012222223444
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhh
Q 005373 305 NELADAKVSAKRYMQDYEK--ERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDD 365 (699)
Q Consensus 305 ~ELae~Kss~~~a~kelE~--ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~reE~Ee 365 (699)
..+.++=..+..++..|.. +..-+.. +.+++|..++.++..+.++..+.-.+.+.
T Consensus 121 ~~~~~~~~~l~~~i~~l~~~~~~~~~~~------~~~~~I~~~E~~~D~l~~~~~~~lf~~~~ 177 (214)
T PF01865_consen 121 EIVVEAIEELVEAIEELKSILESSFEEK------ELIKEINKLEEEADKLYRRLIKKLFSNED 177 (214)
T ss_dssp HHHHHHHHHHHHHHCCCCCCCCS-HCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhHH------HHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4444444444455555443 2111111 67788999999999999987776555433
No 346
>PF04778 LMP: LMP repeated region; InterPro: IPR006864 This repeated sequence element is found in the LMP group of surface-located membrane proteins of Mycoplasma hominis. The the number of repeats in the protein affects the tendency of cells to spontaneously aggregate. Agglutination may be an important factor in colonization. Non-agglutinating microorganisms might easily be distributed whereas aggregation might provide a better chance to avoid an antibody response since some of the epitopes may be buried [].
Probab=30.41 E-value=4e+02 Score=27.08 Aligned_cols=72 Identities=18% Similarity=0.369 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 005373 229 EAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRS----REHEKIRAFIDDLKAEISRERKNRQRIEIVNS 301 (699)
Q Consensus 229 k~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKs----kE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~ 301 (699)
=.||++.|.+|++.+.+-..+- ....|+++|...+-+.++ .-..-|-++=..|+..|....-....+...|.
T Consensus 71 F~eLq~tr~~I~eFi~~~K~Np-nY~~li~~Lt~~kd~k~sVt~SSNKSdI~aAN~~L~qAL~~Ak~~K~~~~~~~k 146 (157)
T PF04778_consen 71 FNELQQTRKQIDEFINKNKNNP-NYAELIKKLTQKKDSKNSVTESSNKSDIEAANQELKQALNKAKTHKEQADNQNK 146 (157)
T ss_pred HHHHHHHHHHHHHHHhhccCCc-cHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3789999999999999885444 567888888877765543 22233444444444444443333333333333
No 347
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=30.30 E-value=8.2e+02 Score=27.46 Aligned_cols=162 Identities=20% Similarity=0.166 Sum_probs=0.0
Q ss_pred hhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 005373 210 SHMKHLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRE 289 (699)
Q Consensus 210 nri~leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~E 289 (699)
|.+-+.++......-+..|..+|..+++++.++++.....+..+...-.-+. .--+.....++..+..++.+|..-
T Consensus 191 ~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~----~~~~~~~~~l~~~l~~l~~~l~~l 266 (498)
T TIGR03007 191 NGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLL----AGSSVANSELDGRIEALEKQLDAL 266 (498)
T ss_pred CcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcC----cccccCCCchHHHHHHHHHHHHHH
Q ss_pred H-----------HhhhhHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 290 R-----------KNRQRIEIVNSKLVNE--------------------LADAKVSAKRYMQDYEKERKERELIEEVCDEL 338 (699)
Q Consensus 290 R-----------k~Rkr~E~ln~KL~~E--------------------Lae~Kss~~~a~kelE~ERKaRellE~vCdEL 338 (699)
+ .++++++.+...|..| |......+..-+..++.+...-.-.-+--.+-
T Consensus 267 ~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~ 346 (498)
T TIGR03007 267 RLRYTDKHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARIERLESL 346 (498)
T ss_pred HHHhcccChHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHH
Q 005373 339 AKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEV 375 (699)
Q Consensus 339 AkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEv 375 (699)
...+.+.+.+...|.|+..-.+.-.+.=-.-++.|+.
T Consensus 347 ~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~ 383 (498)
T TIGR03007 347 LRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEV 383 (498)
T ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 348
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=30.24 E-value=7.4e+02 Score=26.91 Aligned_cols=135 Identities=21% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---hhhHH-HHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 005373 225 VAALEAEVEQARTRIQELETER---RSSKK-KLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVN 300 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~---~s~k~-eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln 300 (699)
|-.|.+++..++..++=|-..+ .-.+. .|..|++||..-|..-.. |.+-+.-.++-+.+.|+.....+++ +.+.
T Consensus 90 l~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqd-Eldel~e~~~~el~~l~~~~q~k~~-~il~ 167 (258)
T PF15397_consen 90 LEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQD-ELDELNEMRQMELASLSRKIQEKKE-EILS 167 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHh
Q 005373 301 SKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLRE 361 (699)
Q Consensus 301 ~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~re 361 (699)
.-.++=+.-...++.+-+.+=-.=.|.=..--+.-++|-.+|...++||+.|.......|+
T Consensus 168 ~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re 228 (258)
T PF15397_consen 168 SAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPRE 228 (258)
T ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
No 349
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=29.70 E-value=1e+03 Score=29.23 Aligned_cols=128 Identities=20% Similarity=0.309 Sum_probs=0.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHH
Q 005373 291 KNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKML 370 (699)
Q Consensus 291 k~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~reE~EeER~ML 370 (699)
|+.--++.+|.=|-....++=..+=++++|++.=+ .++.-.+..+..++.+..++ |-+-..-|-
T Consensus 42 kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~--------------~ea~~L~~~~~~v~~~~~~~--e~~t~~s~~ 105 (766)
T PF10191_consen 42 KLQLYSQEVNASLEETSQQALQRVPRVLREVDRLR--------------QEAASLQEQMASVQEEIKAV--EQDTAQSMA 105 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhhh--hccHHHHHH
Q ss_pred HHHHHhHHHhhhhhhhhhhhhhHHHhHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHhhc-ccccccccc
Q 005373 371 QMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSSRSINPDIQEMKEAEMLRQAAASV-NIQEIKEFT 444 (699)
Q Consensus 371 qmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~eLE~FL~sk~~~~d~~~~r~ae~~rqs~eSv-~~~~ike~t 444 (699)
++++. .+|+.++..|+..|.| -...+.|..+|+.+|.+.. ....|..+..+-.|+ -+.++.+|.
T Consensus 106 ~L~~l---d~vK~rm~~a~~~L~E-A~~w~~l~~~v~~~~~~~d------~~~~a~~l~~m~~sL~~l~~~pd~~ 170 (766)
T PF10191_consen 106 QLAEL---DSVKSRMEAARETLQE-ADNWSTLSAEVDDLFESGD------IAKIADRLAEMQRSLAVLQDVPDYE 170 (766)
T ss_pred HHHHH---HHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHHHHHHcCCCchh
No 350
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=29.70 E-value=1e+03 Score=28.41 Aligned_cols=31 Identities=13% Similarity=0.191 Sum_probs=19.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 005373 221 AVSMVAALEAEVEQARTRIQELETERRSSKK 251 (699)
Q Consensus 221 ~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~ 251 (699)
+...+..|...|...+.++.+.+++-..++.
T Consensus 192 ~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~ 222 (754)
T TIGR01005 192 NTAAADFLAPEIADLSKQSRDAEAEVAAYRA 222 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666677766666666666555554
No 351
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=29.60 E-value=5.2e+02 Score=24.89 Aligned_cols=72 Identities=14% Similarity=0.225 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----cHHHHHHHHH
Q 005373 281 DLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGE----DKAEVEALKR 354 (699)
Q Consensus 281 slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~e----dkaEVe~LKr 354 (699)
.+.+.|++=.+.++.++.+-...-.+|.+++.-....+.+...+-. .++++..++.-+.+.. -+.+++.-+.
T Consensus 37 ~I~~~l~~Ae~~~~eA~~~~~~~e~~L~~A~~ea~~ii~~A~~~a~--~~~~~a~~~a~~~~~~~~~~a~~~I~~ek~ 112 (159)
T PRK09173 37 RIKNELAEARRLREEAQQLLAEYQRKRKEAEKEAADIVAAAEREAE--ALTAEAKRKTEEYVARRNKLAEQKIAQAET 112 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556677777777777777777777777777776666533 5555555554444433 4444444333
No 352
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=29.40 E-value=4.8e+02 Score=29.15 Aligned_cols=47 Identities=21% Similarity=0.317 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhccHHHHHHHHHhhHHHH
Q 005373 314 AKRYMQDYEKERKERELIE-EVCDELAKEIGEDKAEVEALKRESMKLR 360 (699)
Q Consensus 314 ~~~a~kelE~ERKaRellE-~vCdELAkeI~edkaEVe~LKres~k~r 360 (699)
+.++++.||+=-.+++-+| ++-..|+.=+.+-|+.|+.|++....+.
T Consensus 160 ~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~ 207 (342)
T PF06632_consen 160 ANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAK 207 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 3444555555445554444 4667788888999999999988765543
No 353
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=29.31 E-value=7.5e+02 Score=26.68 Aligned_cols=33 Identities=9% Similarity=0.124 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 005373 271 EHEKIRAFIDDLKAEISRERKNRQRIEIVNSKL 303 (699)
Q Consensus 271 E~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL 303 (699)
|-+|....+..|...+.....+=+.+...|.++
T Consensus 248 eL~kf~~~~~~i~~~~~~Q~~ll~~i~~~~~~f 280 (342)
T cd08915 248 HLKKFDKDLTYVEKTKKKQIELIKEIDAANQEF 280 (342)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555
No 354
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=28.76 E-value=6.8e+02 Score=26.02 Aligned_cols=57 Identities=9% Similarity=0.104 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhccHHHHHH
Q 005373 295 RIEIVNSKLVNELADAKVSAKRYMQDYEKE--RKERELIEEVCDELAKEIGEDKAEVEA 351 (699)
Q Consensus 295 r~E~ln~KL~~ELae~Kss~~~a~kelE~E--RKaRellE~vCdELAkeI~edkaEVe~ 351 (699)
.++.+-...-..|++++.-....+.+...+ +...+++++.=.|..+-+..-+++++.
T Consensus 54 eA~~~~~e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~ 112 (246)
T TIGR03321 54 EAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRR 112 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444433222 223355555555555555555555444
No 355
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=28.73 E-value=5.3e+02 Score=24.77 Aligned_cols=21 Identities=10% Similarity=0.311 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhH
Q 005373 276 RAFIDDLKAEISRERKNRQRI 296 (699)
Q Consensus 276 ~a~i~slk~ELe~ERk~Rkr~ 296 (699)
..-+..|..+||+++..+..+
T Consensus 15 ~n~La~Le~slE~~K~S~~eL 35 (107)
T PF09304_consen 15 QNRLASLERSLEDEKTSQGEL 35 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 344445555555555554443
No 356
>PRK04654 sec-independent translocase; Provisional
Probab=28.66 E-value=2.7e+02 Score=29.46 Aligned_cols=15 Identities=33% Similarity=0.419 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHH
Q 005373 277 AFIDDLKAEISRERK 291 (699)
Q Consensus 277 a~i~slk~ELe~ERk 291 (699)
..+.++++|+++|=+
T Consensus 41 ~~~~~vk~El~~El~ 55 (214)
T PRK04654 41 MQWDSVKQELERELE 55 (214)
T ss_pred HHHHHHHHHHHHhhh
Confidence 345566666666544
No 357
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=28.63 E-value=1.8e+02 Score=32.07 Aligned_cols=53 Identities=26% Similarity=0.433 Sum_probs=38.3
Q ss_pred cHHHHHHHHHhhHHHHhhhhhhHHHHHHHHHhHHHhhhhhhhhhhhhhHHHhHHHHHHHHHHHHHHhh
Q 005373 345 DKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSS 412 (699)
Q Consensus 345 dkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~eLE~FL~s 412 (699)
-+.||++||....++||.+ -||=- .-+||+++|-|--.++.+|+.=|||.=.+
T Consensus 87 RetEI~eLksQL~RMrEDW-------------IEEEC--HRVEAQLALKEARkEIkQLkQvieTmrss 139 (305)
T PF15290_consen 87 RETEIDELKSQLARMREDW-------------IEEEC--HRVEAQLALKEARKEIKQLKQVIETMRSS 139 (305)
T ss_pred hHHHHHHHHHHHHHHHHHH-------------HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4578888998877776655 44422 34678888888888888898888886544
No 358
>PLN03188 kinesin-12 family protein; Provisional
Probab=28.63 E-value=1.5e+03 Score=29.97 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 005373 221 AVSMVAALEAEVEQARTRIQELETERRSSKK 251 (699)
Q Consensus 221 ~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~ 251 (699)
-|+|.--|++||+-.|.++.+|..|-...|+
T Consensus 1063 wislteelr~eles~r~l~Ekl~~EL~~eK~ 1093 (1320)
T PLN03188 1063 WISLAEELRTELDASRALAEKQKHELDTEKR 1093 (1320)
T ss_pred heechHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4555566666666666666666665555543
No 359
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=28.56 E-value=1e+03 Score=27.91 Aligned_cols=9 Identities=33% Similarity=0.501 Sum_probs=4.3
Q ss_pred HHHHHHHHH
Q 005373 397 SQMNKLVAE 405 (699)
Q Consensus 397 s~ldkL~~e 405 (699)
.++++|...
T Consensus 260 ~qldkL~kt 268 (447)
T KOG2751|consen 260 AQLDKLRKT 268 (447)
T ss_pred HHHHHHHhh
Confidence 345555543
No 360
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.54 E-value=3.9e+02 Score=30.30 Aligned_cols=81 Identities=25% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHH
Q 005373 275 IRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKR 354 (699)
Q Consensus 275 i~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKr 354 (699)
|+|.|-+.-.| |+|+++|..=-+|-.|++.+| .-+.|+..-++
T Consensus 207 irasvisa~~e-----klR~r~eeeme~~~aeq~slk--------------------------------Rt~EeL~~G~~ 249 (365)
T KOG2391|consen 207 IRASVISAVRE-----KLRRRREEEMERLQAEQESLK--------------------------------RTEEELNIGKQ 249 (365)
T ss_pred hhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH--------------------------------hhHHHHHhhHH
Q ss_pred hhHHHHhhhhhhHHHHHHHHHhHHHhhhhhhhhhhhhhH
Q 005373 355 ESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVE 393 (699)
Q Consensus 355 es~k~reE~EeER~MLqmAEvWREERVQMKL~dAk~~le 393 (699)
+.+.+.+++|.++..||+.=--+.--|+|-|.+|+. ++
T Consensus 250 kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n-~~ 287 (365)
T KOG2391|consen 250 KLVAMKETLEQQLQSLQKNIDILKSKVREALEKAEN-LE 287 (365)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc-Cc
No 361
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=28.50 E-value=6.8e+02 Score=25.92 Aligned_cols=82 Identities=15% Similarity=0.203 Sum_probs=58.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 005373 268 RSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNEL--ADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGED 345 (699)
Q Consensus 268 KskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~EL--ae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~ed 345 (699)
-..|-.|+...+..|...+.....+=+.+..+|.+++..- ......-..+++.|+ .+-....+|+..|++|+.-|
T Consensus 195 f~~eL~k~~~~~~~i~~~~~~Q~~ll~~i~~~~~~~~~~~~~~~~~~~r~~~~~~l~---~a~~~y~el~~~l~eG~~FY 271 (296)
T PF13949_consen 195 FEEELKKFDPLQNRIQQNLSKQEELLQEIQEANEEFAQSRKSDQEQKERESALQRLE---AAYDAYKELSSNLEEGLKFY 271 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--SHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHH
Confidence 3456777888888888888888888888888888886332 222344445555554 67788888999999998877
Q ss_pred HHHHHHH
Q 005373 346 KAEVEAL 352 (699)
Q Consensus 346 kaEVe~L 352 (699)
..=...+
T Consensus 272 ~~L~~~~ 278 (296)
T PF13949_consen 272 NDLLEIL 278 (296)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6544443
No 362
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=28.49 E-value=4e+02 Score=29.32 Aligned_cols=45 Identities=29% Similarity=0.335 Sum_probs=34.5
Q ss_pred hhhHHHHHHH-HHhHHHhhhhhhhhhhhhhHHHhHHHHHHHHHHHHHHhh
Q 005373 364 DDERKMLQMA-EVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSS 412 (699)
Q Consensus 364 EeER~MLqmA-EvWREERVQMKL~dAk~~leeK~s~ldkL~~eLE~FL~s 412 (699)
.+.-.+|.-| +.=+|.|++ ||++-+-.|. .+|-+|..+||..-..
T Consensus 203 ~e~a~~L~~aG~g~LDvRLk-Kl~~eke~L~---~qv~klk~qLee~~~~ 248 (302)
T PF09738_consen 203 QEAAQLLESAGDGSLDVRLK-KLADEKEELL---EQVRKLKLQLEERQSE 248 (302)
T ss_pred hhhhhhhcccCCCCHHHHHH-HHHHHHHHHH---HHHHHHHHHHHHHHhc
Confidence 4455677777 888899998 8888776664 4789999999877655
No 363
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=28.09 E-value=6.6e+02 Score=25.62 Aligned_cols=166 Identities=19% Similarity=0.321 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHH----HhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 005373 226 AALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKA----AWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNS 301 (699)
Q Consensus 226 ~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~----awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~ 301 (699)
.|.+.+-..=..-|..|.+.-..|++.+..|-.+++.-.. .......+-.-.-|+++-.-|++|+.-=..++.+|.
T Consensus 5 ~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~ 84 (182)
T PF15035_consen 5 DAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNA 84 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4555555555566777777777788888877777743210 010001111234466677789999988888888998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHHhHH-Hh
Q 005373 302 KLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWRE-ER 380 (699)
Q Consensus 302 KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWRE-ER 380 (699)
-|-..|..++.+-.....|+. |.+.=++.+++||...=.+++.|-+.+..- .- .+-.+ |...||+ -.
T Consensus 85 lLReQLEq~~~~N~~L~~dl~---klt~~~~~l~~eL~~ke~~~~~ee~~~~~y-----~~-~eh~r---ll~LWr~v~~ 152 (182)
T PF15035_consen 85 LLREQLEQARKANEALQEDLQ---KLTQDWERLRDELEQKEAEWREEEENFNQY-----LS-SEHSR---LLSLWREVVA 152 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hc-ccccH---HHHHHHHHHH
Confidence 887777777766666666664 334445556666655544554444443321 11 22233 4467886 24
Q ss_pred hhhhhhhhhhhhHHHhHHHHHHHHHH
Q 005373 381 VQMKLVDAKVAVEQKYSQMNKLVAEL 406 (699)
Q Consensus 381 VQMKL~dAk~~leeK~s~ldkL~~eL 406 (699)
|.-.++|-|.+-|- -|..+++|+
T Consensus 153 lRr~f~elr~~Ter---dL~~~r~e~ 175 (182)
T PF15035_consen 153 LRRQFAELRTATER---DLSDMRAEF 175 (182)
T ss_pred HHHHHHHHHHHHHh---hHHHHHHHH
Confidence 45555555554332 344455544
No 364
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=28.07 E-value=6e+02 Score=25.18 Aligned_cols=81 Identities=17% Similarity=0.133 Sum_probs=42.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhh--hhh
Q 005373 291 KNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKE--RKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEV--DDE 366 (699)
Q Consensus 291 k~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~E--RKaRellE~vCdELAkeI~edkaEVe~LKres~k~reE~--EeE 366 (699)
+.+..++.+....-..|.+++......+.+...+ +....++++.=.+..+-+.+.+++++.-+.+. +.++ +-.
T Consensus 69 ~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a---~~~l~~ei~ 145 (184)
T CHL00019 69 ERREEAIEKLEKARARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLENYKNETIRFEQQRA---INQVRQQVF 145 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 3334444444444555555555554444444332 22345666666677776777776666655442 2334 223
Q ss_pred HHHHHHHH
Q 005373 367 RKMLQMAE 374 (699)
Q Consensus 367 R~MLqmAE 374 (699)
...+++|+
T Consensus 146 ~lav~~A~ 153 (184)
T CHL00019 146 QLALQRAL 153 (184)
T ss_pred HHHHHHHH
Confidence 45555665
No 365
>PRK14144 heat shock protein GrpE; Provisional
Probab=28.04 E-value=4.4e+02 Score=27.49 Aligned_cols=22 Identities=23% Similarity=0.151 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005373 298 IVNSKLVNELADAKVSAKRYMQ 319 (699)
Q Consensus 298 ~ln~KL~~ELae~Kss~~~a~k 319 (699)
....+++++|..+--.|.+|+.
T Consensus 92 ~a~~~~~~~LLpV~DnLerAl~ 113 (199)
T PRK14144 92 YGVEKLISALLPVVDSLEQALQ 113 (199)
T ss_pred HHHHHHHHHHhhHHhHHHHHHH
Confidence 4567888888888888877765
No 366
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.67 E-value=7.7e+02 Score=26.30 Aligned_cols=72 Identities=26% Similarity=0.276 Sum_probs=42.1
Q ss_pred hhhHHHHHHHHHhhHHH-HH-HhhhhHHHHHHHHHHHHHHHHHHHHHhhh-----------hHHHHHHHHHHHHHHHHHH
Q 005373 247 RSSKKKLEHFLRKVSEE-KA-AWRSREHEKIRAFIDDLKAEISRERKNRQ-----------RIEIVNSKLVNELADAKVS 313 (699)
Q Consensus 247 ~s~k~eie~l~KqlaEE-K~-awKskE~eki~a~i~slk~ELe~ERk~Rk-----------r~E~ln~KL~~ELae~Kss 313 (699)
....|+=++|.+++..| .. +.|..-. --++||+.|+..--.|..+-+ |.-.-|..+-.|...+=-.
T Consensus 31 emL~KKqe~Le~ki~~e~e~~A~k~~tk-NKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~ 109 (221)
T KOG1656|consen 31 EMLEKKQEFLEKKIEQEVENNARKYGTK-NKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLDAMGS 109 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcccccHHHHHHHHH
Confidence 34445668888888888 33 5555444 346888998887777766532 2222244444555554444
Q ss_pred HHHHHH
Q 005373 314 AKRYMQ 319 (699)
Q Consensus 314 ~~~a~k 319 (699)
..+|||
T Consensus 110 ~A~AmK 115 (221)
T KOG1656|consen 110 AAKAMK 115 (221)
T ss_pred HHHHHH
Confidence 444544
No 367
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=27.66 E-value=7.7e+02 Score=26.24 Aligned_cols=38 Identities=26% Similarity=0.342 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHH--hhhccHHHHHHHHHhhHHHHhh
Q 005373 325 RKERELIEEVCDELAK--EIGEDKAEVEALKRESMKLREE 362 (699)
Q Consensus 325 RKaRellE~vCdELAk--eI~edkaEVe~LKres~k~reE 362 (699)
.|+++--+..|.|.-+ ..+--+.+|+.+..+..+..++
T Consensus 133 ~KaK~~Y~~~c~e~e~~~~~~~t~k~leK~~~k~~ka~~~ 172 (269)
T cd07673 133 QKSKENYNAKCLEQERLKKEGATQREIEKAAVKSKKATES 172 (269)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 3556666666765422 1222456666666666655444
No 368
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=27.55 E-value=6.4e+02 Score=26.73 Aligned_cols=74 Identities=27% Similarity=0.377 Sum_probs=40.4
Q ss_pred HhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 246 RRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKER 325 (699)
Q Consensus 246 ~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ER 325 (699)
.....++|.--|.++-.=.+-|+.+..++-. +..-+.+|+.| .+|-+-..+|-.+.=----|...|+++|+|.
T Consensus 119 ~~~Rek~Ia~nM~Kmpk~i~e~~~~~~kk~~------~~~~~k~rker-l~eEvre~fGy~vDprdprF~eml~~kEkee 191 (217)
T PF10147_consen 119 RLAREKEIAKNMAKMPKWIAEWKAKIAKKEA------KAQAAKERKER-LIEEVREHFGYKVDPRDPRFQEMLQEKEKEE 191 (217)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH------HHHHHHHHHHH-HHHHHHHHhCCcCCCCChHHHHHHHHHHHHH
Confidence 3344456666666666666666665555421 11122233332 3356666666666555556666677776665
Q ss_pred H
Q 005373 326 K 326 (699)
Q Consensus 326 K 326 (699)
|
T Consensus 192 K 192 (217)
T PF10147_consen 192 K 192 (217)
T ss_pred H
Confidence 5
No 369
>PF09036 Bcr-Abl_Oligo: Bcr-Abl oncoprotein oligomerisation domain; InterPro: IPR015123 This entry represents the oligomerisation domain of the breakpoint cluster region oncoprotein Bcr, and the Bcr/Abl (Abelson-leukemia-virus) fusion protein created by a reciprocal (9;22) fusion []. Brc displays serine/threonine protein kinase activity (2.7.11.1 from EC), acting as a GTPase-activating protein for RAC1 and CDC42. Brc promotes the exchange of RAC or CDC42-bound GDP by GTP, thereby activating them []. The Bcr/Abl fusion protein loses some of the regulatory function of Bcr with regards to small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells []. The Bcr, Bcr/Abl oncoprotein oligomerisation domain consists of a short N-terminal helix (alpha-1), a flexible loop and a long C-terminal helix (alpha-2). Together these form an N-shaped structure, with the loop allowing the two helices to assume a parallel orientation. The monomeric domains associate into a dimer through the formation of an antiparallel coiled coil between the alpha-2 helices and domain swapping of two alpha-1 helices, where one alpha-1 helix swings back and packs against the alpha-2 helix from the second monomer. Two dimers then associate into a tetramer. The oligomerisation domain is essential for the oncogenicity of the Bcr-Abl protein []. ; GO: 0004674 protein serine/threonine kinase activity, 0005096 GTPase activator activity, 0006468 protein phosphorylation, 0007165 signal transduction; PDB: 1K1F_C.
Probab=27.42 E-value=1.8e+02 Score=26.41 Aligned_cols=42 Identities=21% Similarity=0.389 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHH
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAA 266 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~a 266 (699)
|.-+..||++.++.|+.|++|--..+-.+-+|---||-||.+
T Consensus 28 vgd~e~eLerCK~sirrLeqevnkERFrmiYLQTlLAkErks 69 (79)
T PF09036_consen 28 VGDIEQELERCKASIRRLEQEVNKERFRMIYLQTLLAKERKS 69 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 566889999999999999998877777777777777777654
No 370
>PRK14147 heat shock protein GrpE; Provisional
Probab=27.34 E-value=5.5e+02 Score=25.92 Aligned_cols=19 Identities=32% Similarity=0.286 Sum_probs=12.9
Q ss_pred chhhhhccCC-CCCCccccc
Q 005373 454 FSVFEDVNFG-ESNEREIEP 472 (699)
Q Consensus 454 ~si~eel~~~-e~~~~ei~~ 472 (699)
..|.+.+..| -.++|-|.|
T Consensus 144 g~Vv~v~qkGY~l~~RvLRp 163 (172)
T PRK14147 144 GHVVQVFQKGYLLNERLLRP 163 (172)
T ss_pred CEEEEEeeCCcEeCCEeccC
Confidence 4577777777 666666655
No 371
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=27.31 E-value=2.5e+02 Score=31.00 Aligned_cols=38 Identities=29% Similarity=0.277 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHH
Q 005373 321 YEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMK 358 (699)
Q Consensus 321 lE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k 358 (699)
=+|.|.++|-++.-|..|-+.-++.|..+.+|-+|..-
T Consensus 243 RqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~y 280 (294)
T KOG4571|consen 243 RQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRY 280 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666655554443
No 372
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=27.19 E-value=4.1e+02 Score=34.08 Aligned_cols=78 Identities=19% Similarity=0.198 Sum_probs=46.8
Q ss_pred HHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 245 ERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKE 324 (699)
Q Consensus 245 E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~E 324 (699)
++..+.-.++.+.||+..+ ..--+.+.+-+.-..+...--+..=||.|++.|.. .+++.+...-+.+++..++-|
T Consensus 623 q~~~~~s~lE~~~kq~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~s----~~~~~~~~~~~l~~~~a~~~e 697 (1221)
T KOG0245|consen 623 QRLDYESKLESEQKQLETE-LREISEEEEEVQWTVKECELALWAKRKAKRHQEQS----LRDLLEGNAIFLAAAAALEVE 697 (1221)
T ss_pred hhHHHHHHHHHHHHHHhhh-cccccchhhhhhhhhhhhhhhHHHHHHHHHHHHHH----HHhhhhhhhHHHHHHHHHHHH
Confidence 3344556788888888777 11122233555555666666778889999999887 234444555555555555554
Q ss_pred HHH
Q 005373 325 RKE 327 (699)
Q Consensus 325 RKa 327 (699)
-+.
T Consensus 698 ~~k 700 (1221)
T KOG0245|consen 698 LKK 700 (1221)
T ss_pred hcc
Confidence 443
No 373
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=26.99 E-value=1.1e+03 Score=27.80 Aligned_cols=43 Identities=21% Similarity=0.073 Sum_probs=25.6
Q ss_pred HHHHHhhhhcc--cccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005373 203 AEVRQIYSHMK--HLDQQVSAVSMVAALEAEVEQARTRIQELETE 245 (699)
Q Consensus 203 ~ellkvlnri~--leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E 245 (699)
+.-+.+|-+-- |++.+..+--.-+.|+.|-.+-..|++.|+.-
T Consensus 221 ~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq 265 (502)
T KOG0982|consen 221 ERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQ 265 (502)
T ss_pred HHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHH
Confidence 33334444443 44444333344578888888888888888753
No 374
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=26.92 E-value=6.9e+02 Score=25.46 Aligned_cols=84 Identities=13% Similarity=0.147 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHH
Q 005373 274 KIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELA-DAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEAL 352 (699)
Q Consensus 274 ki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELa-e~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~L 352 (699)
-+..+...|..|++..= ..|..++..|. ++-.-|+.+.++++++||. ++.-...+-+.+..--.+|+..
T Consensus 62 s~~~aw~~i~~e~~~~a-------~~H~~~a~~l~~~v~~~l~~~~~~~~~~rK~---~~~~~~kl~~~~~~~~~~l~ks 131 (251)
T cd07653 62 SSVKAFRSILNEVNDIA-------GQHELIAENLNSNVCKELKTLISELRQERKK---HLSEGSKLQQKLESSIKQLEKS 131 (251)
T ss_pred cHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777765542 23344444443 3444456666776655543 3333344555556666777777
Q ss_pred HHhhHHHHhhhhhhH
Q 005373 353 KRESMKLREEVDDER 367 (699)
Q Consensus 353 Kres~k~reE~EeER 367 (699)
|....+.+.|.+.=+
T Consensus 132 kk~Y~~~~ke~~~a~ 146 (251)
T cd07653 132 KKAYEKAFKEAEKAK 146 (251)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777776664433
No 375
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=26.87 E-value=1.3e+03 Score=28.59 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=24.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 286 ISRERKNRQRIEIVNSKLVNELADAKVSAKRYM 318 (699)
Q Consensus 286 Le~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~ 318 (699)
|.+|=-.|.-+|.----|..|+++.|.-+...-
T Consensus 162 LQqellsrtsLETqKlDLmaevSeLKLkltalE 194 (861)
T KOG1899|consen 162 LQQELLSRTSLETQKLDLMAEVSELKLKLTALE 194 (861)
T ss_pred HHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHH
Confidence 555556778888888888999999887665553
No 376
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=26.75 E-value=7.6e+02 Score=25.87 Aligned_cols=96 Identities=20% Similarity=0.292 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHHhHH
Q 005373 305 NELADAKVSAKRYMQDYEKERK------ERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWRE 378 (699)
Q Consensus 305 ~ELae~Kss~~~a~kelE~ERK------aRellE~vCdELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWRE 378 (699)
++++-+..+|...|+++--+=. --..|...=.+|+.-|.+...+-..|-.+ -++.|++-=+-|++
T Consensus 33 k~~~~a~~~F~~~L~~f~~~~~g~~~tDDe~~i~~~L~kF~~~l~ei~~~r~~L~~q---------~~~~l~~pL~~F~k 103 (207)
T cd07602 33 KNLSKAQRSFAQTLQNFKFECIGETQTDDEIEIAESLKEFGRLIETVEDERDRMLEN---------AEEQLIEPLEKFRK 103 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH
Confidence 3666666666777766653311 11245566666776666665555554332 24556666667777
Q ss_pred HhhhhhhhhhhhhhHHHhHHHHHHHHHHHHHHhhc
Q 005373 379 ERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSSR 413 (699)
Q Consensus 379 ERVQMKL~dAk~~leeK~s~ldkL~~eLE~FL~sk 413 (699)
|=++ ..-|+|-.|+.- .+++-.=++.||.-.
T Consensus 104 ~dl~-~~ke~kk~FdK~---se~~~~al~k~~~ls 134 (207)
T cd07602 104 EQIG-GAKEEKKKFDKE---TEKFCSSLEKHLNLS 134 (207)
T ss_pred HHHH-HHHHHHHHHHHH---HHHHHHHHHHHhccC
Confidence 7665 666666666553 334444566777653
No 377
>PF08598 Sds3: Sds3-like; InterPro: IPR013907 Repression of gene transcription is mediated by histone deacetylases containing repressor-co-repressor complexes, which are recruited to promoters of target genes via interactions with sequence-specific transcription factors. The co-repressor complex contains a core of at least seven proteins []. This entry represents the conserved region found in Sds3, Dep1 and BRMS1-homologue p40 proteins. ; PDB: 2XUS_A.
Probab=26.43 E-value=89 Score=30.94 Aligned_cols=95 Identities=27% Similarity=0.332 Sum_probs=5.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hccHHHHHHHHHhhHHHHhhhhhhHHHH
Q 005373 293 RQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEI--GEDKAEVEALKRESMKLREEVDDERKML 370 (699)
Q Consensus 293 Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI--~edkaEVe~LKres~k~reE~EeER~ML 370 (699)
+.++..|+.+|..=...+=..|...+++|+..|..+-.+..+=-++.... ..|.+|+....++......++ .|+.+-
T Consensus 23 ~e~l~~L~~el~~l~~~t~pe~l~~l~~l~~~rd~~l~~a~~~~~~~l~~i~~~~~~e~~~a~~e~~~~~~~l-re~l~~ 101 (205)
T PF08598_consen 23 RERLAQLQQELEQLQEGTHPEYLRRLQDLEERRDERLRVAEILREYRLESIEREYEAERQQAEQEYESEKREL-RERLLE 101 (205)
T ss_dssp HHHHHHHHHCHHHH------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 33344444444333334445566777888888877766555555544443 235555555444433332222 344444
Q ss_pred HHHHHhH---HHhhhhhhhhh
Q 005373 371 QMAEVWR---EERVQMKLVDA 388 (699)
Q Consensus 371 qmAEvWR---EERVQMKL~dA 388 (699)
.+.+-|+ +||-+|-+.+.
T Consensus 102 ~l~ek~~~L~~er~~~d~~~~ 122 (205)
T PF08598_consen 102 ELEEKRRRLEEERENMDISSP 122 (205)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHhccCCcc
Confidence 4444443 45555555533
No 378
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=26.40 E-value=8.4e+02 Score=27.16 Aligned_cols=48 Identities=13% Similarity=0.443 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHH
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFI 279 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i 279 (699)
|.-|++-|-.+..++++= .-||+.|..||+-=+.-|---|..+|.|.+
T Consensus 70 iRHLkakLkes~~~l~dR-------etEI~eLksQL~RMrEDWIEEECHRVEAQL 117 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDR-------ETEIDELKSQLARMREDWIEEECHRVEAQL 117 (305)
T ss_pred HHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888877763 347999999999888889777776665543
No 379
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=26.09 E-value=22 Score=42.02 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHhHHHh
Q 005373 361 EEVDDERKMLQMAEVWREER 380 (699)
Q Consensus 361 eE~EeER~MLqmAEvWREER 380 (699)
.|+..=|.+-.=.++|.||-
T Consensus 271 ~Elk~Lr~~~~n~elLeEe~ 290 (722)
T PF05557_consen 271 EELKHLRQSQENVELLEEEK 290 (722)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHhHHHHHHHHH
Confidence 34444444445556666653
No 380
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=26.08 E-value=8.1e+02 Score=26.02 Aligned_cols=104 Identities=16% Similarity=0.238 Sum_probs=75.8
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHH
Q 005373 298 IVNSKLVN--ELADAKVSAKRYMQDYEKER----KERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQ 371 (699)
Q Consensus 298 ~ln~KL~~--ELae~Kss~~~a~kelE~ER----KaRellE~vCdELAkeI~edkaEVe~LKres~k~reE~EeER~MLq 371 (699)
.+++-.+. ||+-++..|++.|+|||+.+ ..-++|...-.+|++.|++....-..|... -++.|++
T Consensus 24 ~~~~~~~a~~~ls~a~~~~~~~l~~~~~~~f~~~~dDe~i~~~L~kFs~~L~El~~~~~~L~~q---------~~~sl~~ 94 (215)
T cd07631 24 AMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAVLSTQ---------LADAMMF 94 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHH
Confidence 34444433 99999999999999999776 345678888899999988876666555433 2456777
Q ss_pred HHHHhHHHhhhhhhhhhhhhhHHHhHHHHHHHHHHHHHHhhcC
Q 005373 372 MAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSSRS 414 (699)
Q Consensus 372 mAEvWREERVQMKL~dAk~~leeK~s~ldkL~~eLE~FL~sk~ 414 (699)
--+-|++|=|+ +.-|+|-.|+. +-+.+-.=|+.|+....
T Consensus 95 pL~~F~kedL~-~~Ke~KK~FdK---~Se~~d~Al~K~a~lsk 133 (215)
T cd07631 95 PITQFKERDLK-EILTLKEVFQI---ASNDHDAAINRYSRLSK 133 (215)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHH---hhhHHHHHHHHHhcCCC
Confidence 77789999886 57788877765 44566666778887643
No 381
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=26.06 E-value=1e+02 Score=35.81 Aligned_cols=43 Identities=40% Similarity=0.482 Sum_probs=27.3
Q ss_pred hhccHHHHHHHH----HhhHHHHhhhhhhHHHHHHHHHhHHHhhhhhhhhhhhhh
Q 005373 342 IGEDKAEVEALK----RESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAV 392 (699)
Q Consensus 342 I~edkaEVe~LK----res~k~reE~EeER~MLqmAEvWREERVQMKL~dAk~~l 392 (699)
|.|..-=||+|| +|..+++.++|||+.|- -|+||...+-|-++
T Consensus 578 i~el~~ive~lk~~~~kel~kl~~dleeek~mr--------~~lemei~~lkka~ 624 (627)
T KOG4348|consen 578 IIELLCIVEALKKDHGKELEKLRKDLEEEKTMR--------SNLEMEIEKLKKAV 624 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhhHhhHHHHHHHh
Confidence 333333455553 45667788899998884 36778777666554
No 382
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=25.64 E-value=7e+02 Score=27.50 Aligned_cols=64 Identities=30% Similarity=0.378 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHH-----------HHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhh
Q 005373 300 NSKLVNELADAKVSAKRYMQD---YEKERKE-----------RELIEEVCDELAKEIGEDKAEVEALKRESMKLREEV 363 (699)
Q Consensus 300 n~KL~~ELae~Kss~~~a~ke---lE~ERKa-----------RellE~vCdELAkeI~edkaEVe~LKres~k~reE~ 363 (699)
-+-|..+|+|+..-|++||-- |.+||-+ =+-||+..-+|=+++.+---+++.+|+....++.|+
T Consensus 79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~ 156 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREEL 156 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888888888887753 5556543 222334444444555554555666666655554444
No 383
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=25.62 E-value=3.2e+02 Score=27.33 Aligned_cols=69 Identities=22% Similarity=0.363 Sum_probs=0.0
Q ss_pred hHHHHHhhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHH
Q 005373 202 PAEVRQIYSHMKHLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDD 281 (699)
Q Consensus 202 s~ellkvlnri~leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~s 281 (699)
++..-..+-..-..+++..--.+|..|+.+|.+-+..+--|.. -++++|+++ |++...|.+
T Consensus 40 f~~t~~~~r~~~~~r~~~~~~~~v~~~~~~i~~k~~El~~L~~---~d~~kv~~~----------------E~L~d~v~e 100 (146)
T PF05852_consen 40 FQFTKKSLRSHNSLREECEIKNKVSSLETEISEKKKELSHLKK---FDRKKVEDL----------------EKLTDRVEE 100 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCHHHHHHH----------------HHHHHHHHH
Q ss_pred HHHHHHHH
Q 005373 282 LKAEISRE 289 (699)
Q Consensus 282 lk~ELe~E 289 (699)
+++||++|
T Consensus 101 Lkeel~~e 108 (146)
T PF05852_consen 101 LKEELEFE 108 (146)
T ss_pred HHHHHHHH
No 384
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=25.55 E-value=8.1e+02 Score=25.83 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=18.2
Q ss_pred HHHhHHHhhhhhhhhhhhhh-----HHHhHHHHHHHHH
Q 005373 373 AEVWREERVQMKLVDAKVAV-----EQKYSQMNKLVAE 405 (699)
Q Consensus 373 AEvWREERVQMKL~dAk~~l-----eeK~s~ldkL~~e 405 (699)
...=.-+|||-+|.+=+..| ++|-+.+|.|+.+
T Consensus 179 t~~EKnk~lq~QL~~L~~EL~~~kde~k~T~~D~~h~e 216 (246)
T PF00769_consen 179 TYAEKNKRLQEQLKELKSELEQLKDEEKQTQLDIIHAE 216 (246)
T ss_dssp -HHHH-HHHHHHHHHHHHHHHTTB-CCG--HHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhhccchhHHHHHH
Confidence 33445667777776655544 3567777777765
No 385
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=25.51 E-value=23 Score=41.88 Aligned_cols=11 Identities=18% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH
Q 005373 278 FIDDLKAEISR 288 (699)
Q Consensus 278 ~i~slk~ELe~ 288 (699)
.++.+++||+.
T Consensus 292 ~a~~LrDElD~ 302 (713)
T PF05622_consen 292 EARALRDELDE 302 (713)
T ss_dssp -----------
T ss_pred HHHHHhhhHHH
Confidence 34444444443
No 386
>PRK14141 heat shock protein GrpE; Provisional
Probab=25.45 E-value=8e+02 Score=25.74 Aligned_cols=59 Identities=10% Similarity=0.095 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 005373 228 LEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEI 286 (699)
Q Consensus 228 Lk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~EL 286 (699)
|..+|+..+.++.+|...-....-+++.|.|+...|+...+..-.+++-..|-.+.+-|
T Consensus 36 ~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~a~~~~~~dLLpViDnL 94 (209)
T PRK14141 36 EPDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAYGIAGFARDMLSVSDNL 94 (209)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHH
Confidence 33444445555555544444455567777777776666555544444444444444444
No 387
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=25.44 E-value=6.5e+02 Score=24.69 Aligned_cols=75 Identities=16% Similarity=0.216 Sum_probs=42.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005373 268 RSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEI 342 (699)
Q Consensus 268 KskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI 342 (699)
|++|-.+++..+-..-.-|..-|.-..-+..-+..|..+|.+.+..+.++-.++-..+..|.-+...-.+|...-
T Consensus 61 Rn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~ 135 (177)
T PF13870_consen 61 RNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQG 135 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344445555555444455555555555555556666666666666666666666666666666665555555443
No 388
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=25.38 E-value=7.8e+02 Score=25.58 Aligned_cols=13 Identities=15% Similarity=0.227 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q 005373 398 QMNKLVAELEAFL 410 (699)
Q Consensus 398 ~ldkL~~eLE~FL 410 (699)
+.+++..-|+..+
T Consensus 191 ~~~~i~~~l~~~~ 203 (246)
T TIGR03321 191 QREQIRDTIRETL 203 (246)
T ss_pred HHHHHHHHHHHHH
Confidence 4445555555544
No 389
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=25.30 E-value=1.1e+03 Score=27.43 Aligned_cols=182 Identities=21% Similarity=0.311 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--HhhHHHHHHhhhh-------HHHHHHHHHHHHHHHHHHHHHhhhh
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFL--RKVSEEKAAWRSR-------EHEKIRAFIDDLKAEISRERKNRQR 295 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~--KqlaEEK~awKsk-------E~eki~a~i~slk~ELe~ERk~Rkr 295 (699)
+.++++||..|+..-.+.+.|+...+.|+...- ++..++..+--++ +.-++...-+.++.+|..==.-|++
T Consensus 83 lr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~q 162 (499)
T COG4372 83 LRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQ 162 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999888888887766666544321 1222221111111 2233334445555555544444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHH---hhh-----h
Q 005373 296 IEIVNSKLVNELADAKVSAKRY---MQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLR---EEV-----D 364 (699)
Q Consensus 296 ~E~ln~KL~~ELae~Kss~~~a---~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~r---eE~-----E 364 (699)
++.--.-|-.+-.+...++.+. ..||-.+-+ -+|.-..+||..-.-.++--++|-+.-...+ .++ .
T Consensus 163 l~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~---~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~ 239 (499)
T COG4372 163 LEAQAQSLQASQKQLQASATQLKSQVLDLKLRSA---QIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQ 239 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544444444444444333332 233332222 2666666666654444443333322211111 111 1
Q ss_pred hhHHHHHHHHHhHHHhhhhhhhhhhhhhHHHhHHHHHHHHHHHHHHhh
Q 005373 365 DERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSS 412 (699)
Q Consensus 365 eER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~eLE~FL~s 412 (699)
-+-+-++||- |+|=|+-+-..++- ||--.+.+++-+++||.|-.+
T Consensus 240 i~q~~q~iaa--r~e~I~~re~~lq~-lEt~q~~leqeva~le~yyQ~ 284 (499)
T COG4372 240 ISQKAQQIAA--RAEQIRERERQLQR-LETAQARLEQEVAQLEAYYQA 284 (499)
T ss_pred HHHHHHHHHh--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 2223334432 55555544444444 666677777888888888776
No 390
>PTZ00121 MAEBL; Provisional
Probab=25.22 E-value=1.9e+03 Score=29.98 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q 005373 326 KERELIEEVCDELAKEIGED 345 (699)
Q Consensus 326 KaRellE~vCdELAkeI~ed 345 (699)
.+|...+..|.|.++.+.+-
T Consensus 1216 EARraEEErR~EE~RraEEa 1235 (2084)
T PTZ00121 1216 EARKAEDAKKAEAVKKAEEA 1235 (2084)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555444
No 391
>PF10454 DUF2458: Protein of unknown function (DUF2458); InterPro: IPR018858 This entry represents a family of uncharacterised proteins.
Probab=25.22 E-value=6.8e+02 Score=24.84 Aligned_cols=16 Identities=13% Similarity=0.077 Sum_probs=8.3
Q ss_pred CCCCCChHHHHHhhhh
Q 005373 196 PVCLKTPAEVRQIYSH 211 (699)
Q Consensus 196 ~~~lkts~ellkvlnr 211 (699)
|..+.|....|+.+-+
T Consensus 2 p~~It~w~~ALryv~~ 17 (150)
T PF10454_consen 2 PSTITTWPAALRYVMK 17 (150)
T ss_pred chhhhcHHHHHHHHHH
Confidence 4445555556654433
No 392
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=25.19 E-value=1.6e+02 Score=37.34 Aligned_cols=25 Identities=32% Similarity=0.280 Sum_probs=19.9
Q ss_pred HHHHHHHhhhccHHHHHHHHHhhHH
Q 005373 334 VCDELAKEIGEDKAEVEALKRESMK 358 (699)
Q Consensus 334 vCdELAkeI~edkaEVe~LKres~k 358 (699)
=||+=|+-|+|.+.||+.|+.....
T Consensus 358 NedpnarvirElReEve~lr~qL~~ 382 (1714)
T KOG0241|consen 358 NEDPNARVIRELREEVEKLREQLEQ 382 (1714)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHhh
Confidence 4889999999999999888765443
No 393
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=25.04 E-value=1.4e+03 Score=28.52 Aligned_cols=160 Identities=21% Similarity=0.252 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 005373 228 LEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNEL 307 (699)
Q Consensus 228 Lk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~EL 307 (699)
.+.|||..-.+|+.|..--...... -..-++.+|.+..-..-+..|=..|+-.++.|.-|..|.
T Consensus 344 ~q~eLdK~~~~i~~Ln~~leaReaq----------------ll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~ 407 (961)
T KOG4673|consen 344 VQLELDKTKKEIKMLNNALEAREAQ----------------LLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEY 407 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHH
Confidence 4789999988888887644422221 112234455555555556666666777777777777776
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhccH-HHHHHHHHhhHHHHhhh-hhhHHHHHHHHHhHHHhhhhh
Q 005373 308 ADAKVSAKRYMQDYEKERKE-RELIEEVCDELAKEIGEDK-AEVEALKRESMKLREEV-DDERKMLQMAEVWREERVQMK 384 (699)
Q Consensus 308 ae~Kss~~~a~kelE~ERKa-RellE~vCdELAkeI~edk-aEVe~LKres~k~reE~-EeER~MLqmAEvWREERVQMK 384 (699)
-.-=+.+-+-++-+=+||-+ |.-|-.+-+|||-.|-.|+ +|-.++-+..+ .|- +--++.||-+-.-+-=|.+-|
T Consensus 408 ~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm---~EGEkLSK~ql~qs~iIkKLRAk~k 484 (961)
T KOG4673|consen 408 HQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLM---AEGEKLSKKQLAQSAIIKKLRAKIK 484 (961)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 66666666666666666654 4445556666666665432 23222222211 111 113445555555444444444
Q ss_pred hhhhhhhhHHHhHHHHHHHHHHHH
Q 005373 385 LVDAKVAVEQKYSQMNKLVAELEA 408 (699)
Q Consensus 385 L~dAk~~leeK~s~ldkL~~eLE~ 408 (699)
-.| ..++.|+..+-+|..|++.
T Consensus 485 e~e--tl~~K~ge~i~~L~sE~~~ 506 (961)
T KOG4673|consen 485 EAE--TLEEKKGELITKLQSEENK 506 (961)
T ss_pred hhh--HHHHHhhhHHHHHHHHHHH
Confidence 332 2233344466666666544
No 394
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.03 E-value=9.7e+02 Score=29.32 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc-HHHHHHHHHh
Q 005373 319 QDYEKERKERELIEEVCDELAKEIGED-KAEVEALKRE 355 (699)
Q Consensus 319 kelE~ERKaRellE~vCdELAkeI~ed-kaEVe~LKre 355 (699)
+|||--++.+.-+|..|.+|++-.-++ +---+.|+++
T Consensus 522 ~ElE~~~~~~~~~e~~~evL~~~~~~t~~l~Kq~L~~~ 559 (852)
T KOG4787|consen 522 SELEGKIPTIDEIEQCCEVLAAVETQTGRLCKQFLKID 559 (852)
T ss_pred HHHHhhcCcHhHHHHHHHHHHHHhhhHHHHHHHHHHhc
Confidence 334455667777777777777655444 4444444444
No 395
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=25.02 E-value=1.2e+03 Score=27.53 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=12.2
Q ss_pred hhccHHHHHHHHHhhHHHHhhh
Q 005373 342 IGEDKAEVEALKRESMKLREEV 363 (699)
Q Consensus 342 I~edkaEVe~LKres~k~reE~ 363 (699)
|.-.++||+.||.....++.+.
T Consensus 255 i~~l~~EveRlrt~l~~Aqk~~ 276 (552)
T KOG2129|consen 255 IDKLQAEVERLRTYLSRAQKSY 276 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666666655554333
No 396
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=24.92 E-value=9.8e+02 Score=26.55 Aligned_cols=12 Identities=17% Similarity=0.304 Sum_probs=5.4
Q ss_pred hHHHhHHHHHHH
Q 005373 392 VEQKYSQMNKLV 403 (699)
Q Consensus 392 leeK~s~ldkL~ 403 (699)
+++.|..++.++
T Consensus 135 ~~~~y~~~d~~q 146 (332)
T TIGR01541 135 LHAYYAAEDALQ 146 (332)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 397
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=24.90 E-value=1.6e+03 Score=29.66 Aligned_cols=34 Identities=32% Similarity=0.261 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 005373 270 REHEKIRAFIDDLKAEISRERKNRQRIEIVNSKL 303 (699)
Q Consensus 270 kE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL 303 (699)
.--+.+.....-++.....+++.+.|.+.-..||
T Consensus 693 ~~l~~i~~f~~ll~~k~~~~~~~~~r~~~gl~kl 726 (1395)
T KOG3595|consen 693 SYLEFIGTFKKLLKEKRSEVRLRKLRLELGLDKL 726 (1395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Confidence 3456677777888888888888888888877776
No 398
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=24.83 E-value=1.5e+02 Score=31.00 Aligned_cols=45 Identities=18% Similarity=0.250 Sum_probs=39.0
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 005373 216 DQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKV 260 (699)
Q Consensus 216 eq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~Kql 260 (699)
=.|--|...|.+|+-|+.....-|..|+++-...=.+.+.|++.+
T Consensus 156 LKHNLNA~AI~sL~~e~~~~~~di~~Li~~m~~sI~ead~FI~~l 200 (201)
T PF11172_consen 156 LKHNLNAQAIASLQGEFSSIESDISQLIKEMERSIAEADAFIASL 200 (201)
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345557778999999999999999999999988888999998865
No 399
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=24.36 E-value=1.1e+03 Score=27.94 Aligned_cols=13 Identities=15% Similarity=0.146 Sum_probs=9.6
Q ss_pred CCccccccccccc
Q 005373 652 GNPHVTRGMKGCI 664 (699)
Q Consensus 652 ~Nphv~RGmkGci 664 (699)
...++.+||++-+
T Consensus 510 Ld~ql~~a~~~~~ 522 (555)
T TIGR03545 510 LDKLLAKAFKKEI 522 (555)
T ss_pred HHHHHHHHHHHHH
Confidence 3477888888876
No 400
>PRK10132 hypothetical protein; Provisional
Probab=24.35 E-value=6e+02 Score=24.05 Aligned_cols=27 Identities=15% Similarity=0.332 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhHHH
Q 005373 237 TRIQELETERRSSKKKLEHFLRKVSEE 263 (699)
Q Consensus 237 ~rI~eL~~E~~s~k~eie~l~KqlaEE 263 (699)
+++.+|..+-+..-..++.|++..+.+
T Consensus 12 ~q~e~L~~Dl~~L~~~le~ll~~~~~~ 38 (108)
T PRK10132 12 DGVQDIQNDVNQLADSLESVLKSWGSD 38 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445555555555555666666655543
No 401
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=24.32 E-value=1.7e+02 Score=33.69 Aligned_cols=61 Identities=25% Similarity=0.332 Sum_probs=47.6
Q ss_pred hccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHHhHHHhhhhhhhhhhhhhHHHhHHHHHHHHHHHH
Q 005373 343 GEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEA 408 (699)
Q Consensus 343 ~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~eLE~ 408 (699)
=+|+.||+.+|++-.|+..-+..-+-=+++. +++|-+|.+++.+|..=+++...|+.|+.+
T Consensus 416 v~~edeirrlkrdm~klkq~l~RN~gd~v~s-----~~lqe~L~ev~~~Lasl~aqea~ls~eq~s 476 (486)
T KOG2185|consen 416 VEYEDEIRRLKRDMLKLKQMLNRNKGDLVVS-----EALQERLKEVRKALASLLAQEAALSNEQVS 476 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Confidence 3678888888888888876665555544443 688999999999999999999998888754
No 402
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=24.15 E-value=2.6e+02 Score=23.79 Aligned_cols=33 Identities=27% Similarity=0.401 Sum_probs=18.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 292 NRQRIEIVNSKLVNELADAKVSAKRYMQDYEKER 325 (699)
Q Consensus 292 ~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ER 325 (699)
+-.+++.|+.+|..|+. ++..+.+.++=|....
T Consensus 7 ~~~~l~~L~~~l~~E~~-~r~Gaenm~~~~~~~~ 39 (72)
T cd00089 7 LQSRLERLEKELSIELK-VKEGAENLLRLYSDEK 39 (72)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCC
Confidence 34455556666666553 4555555555555554
No 403
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=24.12 E-value=5.6e+02 Score=23.48 Aligned_cols=56 Identities=21% Similarity=0.503 Sum_probs=40.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHH
Q 005373 220 SAVSMVAALEAEVEQARTRIQELETERR---SSKKKLEHFLRKVSEEKAAWRSREHEKIRAFI 279 (699)
Q Consensus 220 s~~Slv~aLk~EL~~Ar~rI~eL~~E~~---s~k~eie~l~KqlaEEK~awKskE~eki~a~i 279 (699)
.++=-|.-|++|++.-...-..|.+|.+ +.+.++..=-.|+.+|..+|. +++++.+
T Consensus 15 qAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wq----erLr~LL 73 (79)
T PRK15422 15 QAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ----ERLQALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 3455678889998888877777777654 455567777889999999995 4555544
No 404
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=24.03 E-value=3.6e+02 Score=29.42 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=8.5
Q ss_pred HHHHHHHhhhHHHHHHHHH
Q 005373 240 QELETERRSSKKKLEHFLR 258 (699)
Q Consensus 240 ~eL~~E~~s~k~eie~l~K 258 (699)
+||.+.+...+.++..|+.
T Consensus 2 ~el~~~~~~~~~~~r~l~~ 20 (378)
T TIGR01554 2 SELKEQREEIVAEIRSLLD 20 (378)
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 3444444444444444443
No 405
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=24.01 E-value=1.3e+03 Score=27.64 Aligned_cols=75 Identities=20% Similarity=0.452 Sum_probs=40.4
Q ss_pred hhhHHHHHHHHHhhHHHHHHhhhh------HHHHHHH-------HHHHHHHHHHHHHHhhhhHHHHHH---HHHHHHHHH
Q 005373 247 RSSKKKLEHFLRKVSEEKAAWRSR------EHEKIRA-------FIDDLKAEISRERKNRQRIEIVNS---KLVNELADA 310 (699)
Q Consensus 247 ~s~k~eie~l~KqlaEEK~awKsk------E~eki~a-------~i~slk~ELe~ERk~Rkr~E~ln~---KL~~ELae~ 310 (699)
+++..+...-|+++.-.+..|-.+ |-++... -+++|+..|..-+=.=...|.+|. +|.+||.-+
T Consensus 308 ~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i 387 (622)
T COG5185 308 KSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKI 387 (622)
T ss_pred hhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 444445555566655555555332 2333333 344444444433333445666764 789999888
Q ss_pred HHHHHHHHHHH
Q 005373 311 KVSAKRYMQDY 321 (699)
Q Consensus 311 Kss~~~a~kel 321 (699)
+.-..+.++..
T Consensus 388 ~~~~~~L~k~V 398 (622)
T COG5185 388 NIQSDKLTKSV 398 (622)
T ss_pred cchHHHHHHHH
Confidence 76666665543
No 406
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=23.92 E-value=1.2e+03 Score=27.04 Aligned_cols=64 Identities=19% Similarity=0.387 Sum_probs=36.8
Q ss_pred HHHHHHhhHHHHHHh--hhhHHHHHHHHHH----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005373 253 LEHFLRKVSEEKAAW--RSREHEKIRAFID----DLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKR 316 (699)
Q Consensus 253 ie~l~KqlaEEK~aw--KskE~eki~a~i~----slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~ 316 (699)
-..|++.|.+|+.+- -.+|-|-+.+.+. -|...||.|....++.|..-.||...|.+-|.--.+
T Consensus 116 hrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeq 185 (561)
T KOG1103|consen 116 HRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQ 185 (561)
T ss_pred HHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688888877532 2333344444432 344556677777777777777776666554443333
No 407
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=23.69 E-value=1.1e+03 Score=26.90 Aligned_cols=115 Identities=17% Similarity=0.217 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 005373 222 VSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNS 301 (699)
Q Consensus 222 ~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~ 301 (699)
...+..|..|+..-...+..++.+- ...|..+|++ --+.|...+..|.+.=.-..-....+..+..
T Consensus 10 ~~~~~~~~~e~~~i~~e~e~~i~~~------~~~l~~~l~~--------~d~~i~~~~~~l~~d~~l~~~~~~~l~~~w~ 75 (473)
T PF14643_consen 10 EKALESFHEELASISEEVEPLILEA------GEDLKQKLAE--------SDEEIEEIFSKLEDDSALLEYSIQDLLELWD 75 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHh--------hHHHHHHHHHHhcCchhHHHhhHHHHHHHHH
Confidence 3456666666665555444444321 2223333322 3344555555555554445555666666666
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----cHHHHHHH
Q 005373 302 KLVNELADAKVSA---KRYMQDYEKERKERELIEEVCDELAKEIGE----DKAEVEAL 352 (699)
Q Consensus 302 KL~~ELae~Kss~---~~a~kelE~ERKaRellE~vCdELAkeI~e----dkaEVe~L 352 (699)
+++....--+..+ ...+.++|.+|. +-|..+|..++..+.+ ..-+|+.|
T Consensus 76 ~v~~~~~~r~~~I~~l~~~L~~~E~~R~--~~l~~~l~~~~~~L~~ia~~~~~dv~rl 131 (473)
T PF14643_consen 76 EVAEHSQKRKQWIKELDEDLEELEKERA--DKLKKVLRKYVEILEKIAHLLPPDVERL 131 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHccCcHHHHHH
Confidence 6666443333333 334555565554 4456677666666554 44455554
No 408
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=23.66 E-value=8.7e+02 Score=25.52 Aligned_cols=38 Identities=16% Similarity=0.336 Sum_probs=20.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 292 NRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERE 329 (699)
Q Consensus 292 ~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRe 329 (699)
.|+.++....|+-+-+...-..+.++.+.||..-+.-+
T Consensus 101 ~rKk~e~~~ek~~K~~~~~~k~~~ksKk~Ye~~Cke~~ 138 (240)
T cd07672 101 ARKKIELIMDAIHKQRAMQFKKTMESKKNYEQKCRDKD 138 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666555554555555555655444433
No 409
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=23.57 E-value=7.1e+02 Score=24.44 Aligned_cols=58 Identities=19% Similarity=0.330 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhh
Q 005373 305 NELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREE 362 (699)
Q Consensus 305 ~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~reE 362 (699)
.||...|....+.++-|-.-|.....+...+..+..+|.+.+.++..++.+..++..+
T Consensus 63 ~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~ 120 (177)
T PF13870_consen 63 KELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKE 120 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666666666666666666666666666666666665555544433
No 410
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.46 E-value=7.8e+02 Score=24.86 Aligned_cols=132 Identities=15% Similarity=0.163 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHH
Q 005373 224 MVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEIS-RERKNRQRIEIVNSK 302 (699)
Q Consensus 224 lv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe-~ERk~Rkr~E~ln~K 302 (699)
.|..|..=|.........|.+.++..-..+..|=+.|.. |-.-|.+ +..+|..+-.-.+ -...+...++.+...
T Consensus 22 yi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~----ls~~E~~-L~~~L~~~~~~~~~~~~~~~~l~~~~~~~ 96 (200)
T cd07624 22 YLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQL----WSASETE-LAPLLEGVSSAVERCTAALEVLLSDHEFV 96 (200)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666677777777666666666666655554 6676765 5666666543322 112222223333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhccHHHHHHHHHhhHHHHh
Q 005373 303 LVNELADAKVSAKRYMQDYEKERKEREL-IEEVCDELAKEIGEDKAEVEALKRESMKLRE 361 (699)
Q Consensus 303 L~~ELae~Kss~~~a~kelE~ERKaRel-lE~vCdELAkeI~edkaEVe~LKres~k~re 361 (699)
++-=|.|. ..+..++|.+=+.|....+ .|.++++|.+...+.++||+..+.+.+.+.+
T Consensus 97 f~e~Lkey-~~y~~svk~~l~~R~~~q~~~e~~~e~L~~k~~~l~~ev~~a~~~~e~~~~ 155 (200)
T cd07624 97 FLPPLREY-LLYSDAVKDVLKRRDQFQIEYELSVEELNKKRLELLKEVEKLQDKLECANA 155 (200)
T ss_pred hhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222222 2344455555555555554 7788888888877766666665555544433
No 411
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=23.41 E-value=1.6e+02 Score=23.84 Aligned_cols=34 Identities=41% Similarity=0.503 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhh
Q 005373 331 IEEVCDELAKEIGEDKAEVEALKRESMKLREEVD 364 (699)
Q Consensus 331 lE~vCdELAkeI~edkaEVe~LKres~k~reE~E 364 (699)
||.-|+-|-......+++-+.|+++-.+++.|+.
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~ 36 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQ 36 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777777777777666664
No 412
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=23.34 E-value=1.1e+03 Score=26.54 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=16.0
Q ss_pred hhhhhhhhhHHHhHHHHHHHHHHHHHHh
Q 005373 384 KLVDAKVAVEQKYSQMNKLVAELEAFLS 411 (699)
Q Consensus 384 KL~dAk~~leeK~s~ldkL~~eLE~FL~ 411 (699)
+.-++-..+.++..+|.++..+||.--.
T Consensus 288 ~y~~~s~~V~~~t~~L~~IseeLe~vK~ 315 (359)
T PF10498_consen 288 KYKQASEGVSERTRELAEISEELEQVKQ 315 (359)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556666666666666665443
No 413
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.25 E-value=1.1e+02 Score=32.71 Aligned_cols=81 Identities=30% Similarity=0.406 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhHHHhHHHHHHHHHHHHHHhh--cCCCCChhhHHH-HHHHHHHHhhcccccc-cccccCCC----CC---
Q 005373 382 QMKLVDAKVAVEQKYSQMNKLVAELEAFLSS--RSINPDIQEMKE-AEMLRQAAASVNIQEI-KEFTYEPP----NP--- 450 (699)
Q Consensus 382 QMKL~dAk~~leeK~s~ldkL~~eLE~FL~s--k~~~~d~~~~r~-ae~~rqs~eSv~~~~i-ke~ty~p~----~~--- 450 (699)
+|+|.+-.-.+++|+..|..=+.++|+||.+ ++-..+...+.+ -+.++-.+.+|++.+- .+.|-.|| +.
T Consensus 52 ~~~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~aG~v~V~G~Gl~ITi~d~~~~~~~~~~ 131 (247)
T COG3879 52 DLDLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRMLAGSVPVTGPGLVITIDDPGYSPNGVGP 131 (247)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHhccCCCcCCcEEEEecCCCCCcccCCC
Q ss_pred -------CCcchhhhhccC
Q 005373 451 -------DDIFSVFEDVNF 462 (699)
Q Consensus 451 -------dDi~si~eel~~ 462 (699)
+|+++|.-||++
T Consensus 132 ~~~vv~~~dl~~viNeL~~ 150 (247)
T COG3879 132 NSQVVHDDDLQAVINELNI 150 (247)
T ss_pred CccccCHHHHHHHHHHHHh
No 414
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=23.24 E-value=1.5e+03 Score=28.08 Aligned_cols=31 Identities=13% Similarity=0.141 Sum_probs=15.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 005373 283 KAEISRERKNRQRIEIVNSKLVNELADAKVS 313 (699)
Q Consensus 283 k~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss 313 (699)
..+|-..-.+|.+.++-=.++-.|...-+..
T Consensus 150 ~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~ 180 (716)
T KOG4593|consen 150 EDKLAELGTLRNKLDSSLSELQWEVMLQEMR 180 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556666555555555544433333
No 415
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=23.09 E-value=8.6e+02 Score=25.27 Aligned_cols=83 Identities=14% Similarity=0.161 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHH
Q 005373 272 HEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEA 351 (699)
Q Consensus 272 ~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~ 351 (699)
+.-+..++..+..+.+.-=. .|..++..|..+-.-+..+.+++|+.||. +.+-.-.+.+.+.+-.+.++.
T Consensus 60 ~gs~~~a~~~il~~~e~lA~-------~h~~~a~~L~~~~~eL~~l~~~~e~~RK~---~ke~~~k~~k~~~~a~~~leK 129 (234)
T cd07652 60 QGSFSNAYHSSLEFHEKLAD-------NGLRFAKALNEMSDELSSLAKTVEKSRKS---IKETGKRAEKKVQDAEAAAEK 129 (234)
T ss_pred CCcHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHH
Confidence 34455566666665543322 34445555555555566777888888775 344444567777777777888
Q ss_pred HHHhhHHHHhhhh
Q 005373 352 LKRESMKLREEVD 364 (699)
Q Consensus 352 LKres~k~reE~E 364 (699)
-|..-.+.++|+|
T Consensus 130 AK~~Y~~~c~e~E 142 (234)
T cd07652 130 AKARYDSLADDLE 142 (234)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888874
No 416
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=22.90 E-value=7.5e+02 Score=24.48 Aligned_cols=71 Identities=10% Similarity=0.214 Sum_probs=36.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhccHHHHHHHHHh
Q 005373 285 EISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERK--ERELIEEVCDELAKEIGEDKAEVEALKRE 355 (699)
Q Consensus 285 ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERK--aRellE~vCdELAkeI~edkaEVe~LKre 355 (699)
+|++=.+.+..++.+-...-.+|.+++.-....+.+...+-. ..+++++.=.+.++-+..-+.+++.-+.+
T Consensus 66 ~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~~~~A~~~I~~ek~~ 138 (184)
T PRK13455 66 ELEEARALREEAQTLLASYERKQREVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRLAAAEDQIASAEAA 138 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334455555555555555666666555555555433322 22444444445555555555555555444
No 417
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=22.82 E-value=9.3e+02 Score=25.53 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=8.0
Q ss_pred hHHHHHHHHHhhHHH
Q 005373 249 SKKKLEHFLRKVSEE 263 (699)
Q Consensus 249 ~k~eie~l~KqlaEE 263 (699)
|-+++-.|.|++..-
T Consensus 38 YakkL~~L~kKy~~k 52 (253)
T cd07676 38 YAKQLRNLSKKYQPK 52 (253)
T ss_pred HHHHHHHHHHHHHhh
Confidence 444566666655443
No 418
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=22.71 E-value=1.4e+03 Score=27.52 Aligned_cols=79 Identities=22% Similarity=0.236 Sum_probs=40.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH------HHHHhhhccHHHHHHHHH
Q 005373 284 AEISRERKNRQRIEIVNSKLVNELADAKVSAKR---YMQDYEKERKERELIEEVCD------ELAKEIGEDKAEVEALKR 354 (699)
Q Consensus 284 ~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~---a~kelE~ERKaRellE~vCd------ELAkeI~edkaEVe~LKr 354 (699)
++|+.||+.=-.+|.+...+..-+.-.. . -.--+..=.++...|+++|+ +++.-+.+---+|++...
T Consensus 208 e~L~~e~~rLsn~ekl~~~~~~a~~~L~----ge~~~~~~~~~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~ 283 (557)
T COG0497 208 EELEEERKRLSNSEKLAEAIQNALELLS----GEDDTVSALSLLGRALEALEDLSEYDGKLSELAELLEEALYELEEASE 283 (557)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHh----CCCCchhHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHH
Confidence 4677888877777777766644332221 0 00001222334444444443 445555555555666555
Q ss_pred hhHHHHhhhhhh
Q 005373 355 ESMKLREEVDDE 366 (699)
Q Consensus 355 es~k~reE~EeE 366 (699)
+.....++++.|
T Consensus 284 el~~~~~~le~D 295 (557)
T COG0497 284 ELRAYLDELEFD 295 (557)
T ss_pred HHHHHHhcCCCC
Confidence 555555666655
No 419
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=22.70 E-value=93 Score=34.42 Aligned_cols=31 Identities=35% Similarity=0.518 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 005373 229 EAEVEQARTRIQELETERRSSKKKLEHFLRK 259 (699)
Q Consensus 229 k~EL~~Ar~rI~eL~~E~~s~k~eie~l~Kq 259 (699)
+.||+-...+|.||+++.++.+++|..|-++
T Consensus 288 RsElDe~~krL~ELrR~vr~L~k~l~~l~~~ 318 (320)
T TIGR01834 288 RSELDEAHQRIQQLRREVKSLKKRLGDLEAN 318 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 5677888888888888888877777766554
No 420
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=22.67 E-value=7.9e+02 Score=24.69 Aligned_cols=137 Identities=18% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 251 KKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKEREL 330 (699)
Q Consensus 251 ~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRel 330 (699)
..|..+++-...+-.-.---=..-+..+|+++.+.|..=++.--++-....+|.+++.+....+... +.++...
T Consensus 4 ~Rl~~~~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~------~~~A~~A 77 (221)
T PF04012_consen 4 KRLKTLVKANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKW------EKQAELA 77 (221)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
Q ss_pred H----HHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHHhHHHhhhhhhhhhhhhhHHHhHHHHHHHHHH
Q 005373 331 I----EEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAEL 406 (699)
Q Consensus 331 l----E~vCdELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~eL 406 (699)
| |++..+.+..+.+++.+++.|+.........+ +.+.-.|.+.+..+.+--...+.|.+-.
T Consensus 78 l~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~---------------~~l~~~l~~l~~kl~e~k~k~~~l~ar~ 142 (221)
T PF04012_consen 78 LAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQV---------------EKLKEQLEELEAKLEELKSKREELKARE 142 (221)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 005373 407 EA 408 (699)
Q Consensus 407 E~ 408 (699)
.+
T Consensus 143 ~~ 144 (221)
T PF04012_consen 143 NA 144 (221)
T ss_pred HH
No 421
>PRK14157 heat shock protein GrpE; Provisional
Probab=22.67 E-value=4.9e+02 Score=27.75 Aligned_cols=64 Identities=11% Similarity=0.101 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 005373 227 ALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNE 306 (699)
Q Consensus 227 aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~E 306 (699)
.|..+|...+.++.+|...-...+-+.+.+.|+...|+..- ..-.+.+++++
T Consensus 81 ~~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~----------------------------~~~a~~~~~~d 132 (227)
T PRK14157 81 DTLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRF----------------------------RQHGIIDVLTA 132 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHH
Confidence 45566666666666665444445555666655554443311 11225678888
Q ss_pred HHHHHHHHHHHH
Q 005373 307 LADAKVSAKRYM 318 (699)
Q Consensus 307 Lae~Kss~~~a~ 318 (699)
|..+--.|.+++
T Consensus 133 LLpvlDnLeRAl 144 (227)
T PRK14157 133 LLPALDDIDRIR 144 (227)
T ss_pred HhhhhhhHHHHH
Confidence 887776666665
No 422
>PRK01919 tatB sec-independent translocase; Provisional
Probab=22.47 E-value=3.9e+02 Score=27.47 Aligned_cols=17 Identities=47% Similarity=0.804 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005373 274 KIRAFIDDLKAEISRER 290 (699)
Q Consensus 274 ki~a~i~slk~ELe~ER 290 (699)
+++.++.++++|+++|=
T Consensus 38 k~Rr~~~d~K~ev~~E~ 54 (169)
T PRK01919 38 RAQRYINDVKAEVSREI 54 (169)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666777777777663
No 423
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=22.25 E-value=8.6e+02 Score=24.91 Aligned_cols=104 Identities=16% Similarity=0.280 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 005373 224 MVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKL 303 (699)
Q Consensus 224 lv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL 303 (699)
+|.-++..|..++.-+-.+++.++..+++++.+-.. -.-|. +++..+|+ .=|-=|
T Consensus 32 ~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~----~~~~~----~~A~~Al~-----------------~G~EdL 86 (219)
T TIGR02977 32 IIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQ----VADWQ----EKAELALS-----------------KGREDL 86 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH----HHHHHHHH-----------------CCCHHH
Confidence 355556666777777777776666666654444332 22232 23333333 333336
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHh
Q 005373 304 VNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRE 355 (699)
Q Consensus 304 ~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKre 355 (699)
|++..+-|..+...+..|+.+-. -+...+++|-..|.+++.+++.+|.+
T Consensus 87 Ar~Al~~k~~~~~~~~~l~~~~~---~~~~~v~~l~~~l~~L~~ki~~~k~k 135 (219)
T TIGR02977 87 ARAALIEKQKAQELAEALERELA---AVEETLAKLQEDIAKLQAKLAEARAR 135 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666666666666665443 37777888888888888888877654
No 424
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=22.22 E-value=6.8e+02 Score=23.74 Aligned_cols=36 Identities=11% Similarity=0.267 Sum_probs=25.3
Q ss_pred hhhHHHHHHHHHhHHHhhhhhhhhhhhhhHHHhHHH
Q 005373 364 DDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQM 399 (699)
Q Consensus 364 EeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~l 399 (699)
+.+..+-.+...|--.-+..+|-.|-...++....|
T Consensus 80 ~k~~~~~~l~~~~s~~~l~~~L~~~~~e~eeeSe~l 115 (150)
T PF07200_consen 80 EKEQQQDELSSNYSPDALLARLQAAASEAEEESEEL 115 (150)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777778887777777777777777666555
No 425
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=22.20 E-value=2.1e+02 Score=24.77 Aligned_cols=40 Identities=23% Similarity=0.368 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHH
Q 005373 224 MVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEE 263 (699)
Q Consensus 224 lv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEE 263 (699)
-+..|+.++..+|..+.+|+.-..-+...|+.+++.+.+-
T Consensus 60 ~~~~~r~~~~~~r~~l~~ll~~~~~D~~~i~a~~~~~~~~ 99 (125)
T PF13801_consen 60 EMRALRQELRAARQELRALLAAPPPDEAAIEALLEEIREA 99 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 3455666666666666666655555555555555555444
No 426
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=22.11 E-value=1.2e+03 Score=26.63 Aligned_cols=34 Identities=15% Similarity=0.267 Sum_probs=19.9
Q ss_pred HHHHHHHhH-HHhhhhhhhhhhhhhHHHhHHHHHH
Q 005373 369 MLQMAEVWR-EERVQMKLVDAKVAVEQKYSQMNKL 402 (699)
Q Consensus 369 MLqmAEvWR-EERVQMKL~dAk~~leeK~s~ldkL 402 (699)
+.-++++.. +=++.--|.|.-..-+.|-..++.|
T Consensus 206 l~~v~~~l~~~~~lrr~l~d~~~~~~~k~~l~~~l 240 (445)
T PRK13428 206 LVSVAKLLDREPVLTKHLTEPAEDAAPKIRLVERL 240 (445)
T ss_pred HHHHHHHHcccHHHHHHcCCCCCChhhHHHHHHHH
Confidence 344445554 3345666677666666676666655
No 427
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=21.84 E-value=1.5e+02 Score=33.95 Aligned_cols=60 Identities=25% Similarity=0.344 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHH
Q 005373 295 RIEIVNSKLVNELADAKV-SAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKR 354 (699)
Q Consensus 295 r~E~ln~KL~~ELae~Ks-s~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKr 354 (699)
|.=.++++|++.=+-.-+ -++...=|.|.||..++-||.|-..-+.+|.|+++-+-+||+
T Consensus 176 RyY~v~r~l~kAr~~s~sdllk~~~yd~e~Er~RKk~L~~L~sRt~~qvaEEe~Ll~E~Kk 236 (445)
T KOG2656|consen 176 RYYSVCRKLLKARAPSNSDLLKSLVYDAEHERERKKYLERLLSRTPEQVAEEEALLVELKK 236 (445)
T ss_pred HHHHHHHHHHHccCCCchhhhhccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 556788888776555444 366777789999999999999999999999999998888885
No 428
>PRK14161 heat shock protein GrpE; Provisional
Probab=21.81 E-value=8.6e+02 Score=24.79 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005373 298 IVNSKLVNELADAKVSAKRYMQD 320 (699)
Q Consensus 298 ~ln~KL~~ELae~Kss~~~a~ke 320 (699)
....+++++|..+--.|.+|++-
T Consensus 66 ~a~~~~~~~LLpv~DnlerAl~~ 88 (178)
T PRK14161 66 YAIATFAKELLNVSDNLSRALAH 88 (178)
T ss_pred HHHHHHHHHHhhHHhHHHHHHhc
Confidence 34566677777766666666653
No 429
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=21.79 E-value=1.4e+03 Score=27.29 Aligned_cols=14 Identities=29% Similarity=0.691 Sum_probs=7.6
Q ss_pred ccHHHHHHHHHhhH
Q 005373 344 EDKAEVEALKRESM 357 (699)
Q Consensus 344 edkaEVe~LKres~ 357 (699)
..+.|...|.|+.+
T Consensus 373 ~~~~e~~~L~Re~~ 386 (754)
T TIGR01005 373 EQQVDLDALQRDAA 386 (754)
T ss_pred HhHHHHHHHHHHHH
Confidence 34555556665544
No 430
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=21.63 E-value=8.3e+02 Score=24.52 Aligned_cols=78 Identities=15% Similarity=0.370 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHHhHHHhhhhhhhhhhhhhHHHhHHHHHHH
Q 005373 324 ERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLV 403 (699)
Q Consensus 324 ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~ 403 (699)
..++++-+-+.+..|...|...+.+|..+-.+....+..+..|-.=|.= .-..+.-.|......++.|+
T Consensus 101 d~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~-----------~~~~l~~~l~~~~g~I~~L~ 169 (184)
T PF05791_consen 101 DQKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKT-----------DVDELQSILAGENGDIPQLQ 169 (184)
T ss_dssp HHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHTT--HHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hHHHHHHHHhcccCCHHHHH
Confidence 4667777777888888889999999988888777777777666554432 22444455666667777777
Q ss_pred HHHHHHHhh
Q 005373 404 AELEAFLSS 412 (699)
Q Consensus 404 ~eLE~FL~s 412 (699)
.+|+++...
T Consensus 170 ~~I~~~~~~ 178 (184)
T PF05791_consen 170 KQIENLNEE 178 (184)
T ss_dssp HHHHHHTGG
T ss_pred HHHHHHHHH
Confidence 777776554
No 431
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=21.25 E-value=2e+03 Score=28.75 Aligned_cols=134 Identities=16% Similarity=0.283 Sum_probs=64.3
Q ss_pred hhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 005373 247 RSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYE---- 322 (699)
Q Consensus 247 ~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE---- 322 (699)
+..|.+||- +|++-|+|.+-..=.+..-...-+.+.+-|..=...=-.-|.-+ +.+||-+--.++++.|.-|.
T Consensus 1011 ~~AK~QMDa-IKqmIekKv~L~~L~qCqdALeKqnIa~AL~ALn~IPSdKEms~--Is~eLReQIq~~KQ~LesLQRAV~ 1087 (1439)
T PF12252_consen 1011 RQAKAQMDA-IKQMIEKKVVLQALTQCQDALEKQNIAGALQALNNIPSDKEMSK--ISSELREQIQSVKQDLESLQRAVV 1087 (1439)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCchhhhhh--hhHHHHHHHHHHHHHHHHHHHhhc
Confidence 334555554 46666666665532222211112233333322111111112111 44555444444444333332
Q ss_pred -----HHHHHHHHHHHHHHHHHHhhhccHH----HHHHHHHhhH---HHHhhhhhhHHHHHHHHHhHHHhhhhhhhhhhh
Q 005373 323 -----KERKERELIEEVCDELAKEIGEDKA----EVEALKRESM---KLREEVDDERKMLQMAEVWREERVQMKLVDAKV 390 (699)
Q Consensus 323 -----~ERKaRellE~vCdELAkeI~edka----EVe~LKres~---k~reE~EeER~MLqmAEvWREERVQMKL~dAk~ 390 (699)
.+.|.|...|.+-..+.+.|.+.+- .+...|.... .+++|+ -++|-|+++|-.-.-++
T Consensus 1088 TPVvtd~eKvr~rYe~LI~~iTKrIt~LEk~k~~~l~~ikK~ia~lnnlqqEl----------klLRnEK~Rmh~~~dkV 1157 (1439)
T PF12252_consen 1088 TPVVTDAEKVRVRYETLITDITKRITDLEKAKLDNLDSIKKAIANLNNLQQEL----------KLLRNEKIRMHSGTDKV 1157 (1439)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH----------HHHHhHHHhhccCCCcc
Confidence 4667778888888888888876432 2333333322 222333 45677888887766666
Q ss_pred hhH
Q 005373 391 AVE 393 (699)
Q Consensus 391 ~le 393 (699)
+|.
T Consensus 1158 DFS 1160 (1439)
T PF12252_consen 1158 DFS 1160 (1439)
T ss_pred cHH
Confidence 543
No 432
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=21.08 E-value=2.4e+02 Score=26.55 Aligned_cols=41 Identities=24% Similarity=0.354 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHH
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKA 265 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~ 265 (699)
|..|-.++..-+.+|.+|+.|-...+-|-++|.+.|.+...
T Consensus 17 l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 17 LGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57778889999999999999999999999999888877644
No 433
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=20.82 E-value=1.5e+03 Score=27.32 Aligned_cols=35 Identities=14% Similarity=0.090 Sum_probs=17.3
Q ss_pred cccccCCCCCCCCC----CcccccCccc-hhhccCCcccC
Q 005373 469 EIEPSGAYSPASHA----SKMHTVSPEV-NVINKDNLHRH 503 (699)
Q Consensus 469 ei~~c~~~sp~~~~----ski~~~Sp~~-~~~~e~~~~~~ 503 (699)
|.+-|...-.+-.- .-|.+--|++ |+|+..-.+.+
T Consensus 396 Etev~~~PeaAfPla~V~l~i~~q~Pdv~dlllA~l~KkC 435 (591)
T KOG2412|consen 396 ETEVASKPEAAFPLAKVILYIWSQFPDVGDLLLARLHKKC 435 (591)
T ss_pred HHHHHhCCcccchHHHHHHHHHHhCchHHHHHHHHHHhcC
Confidence 55556555333222 3355666754 66665544433
No 434
>PRK11281 hypothetical protein; Provisional
Probab=20.80 E-value=1.9e+03 Score=28.45 Aligned_cols=26 Identities=12% Similarity=0.012 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhH
Q 005373 225 VAALEAEVEQARTRIQELETERRSSK 250 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k 250 (699)
...|++|+..-.+++.-+.+|-.++-
T Consensus 194 ~~~l~ae~~~l~~~~~~~~~~l~~~~ 219 (1113)
T PRK11281 194 RVLLQAEQALLNAQNDLQRKSLEGNT 219 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 44555555555555555555554444
No 435
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=20.67 E-value=9.4e+02 Score=27.59 Aligned_cols=29 Identities=24% Similarity=0.349 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 005373 228 LEAEVEQARTRIQELETERRSSKKKLEHF 256 (699)
Q Consensus 228 Lk~EL~~Ar~rI~eL~~E~~s~k~eie~l 256 (699)
...++...+.+|++|+++....+.+++.+
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~ 97 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRGDAL 97 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666666666655555544443
No 436
>PF15456 Uds1: Up-regulated During Septation
Probab=20.63 E-value=4e+02 Score=25.68 Aligned_cols=81 Identities=16% Similarity=0.225 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHH
Q 005373 270 REHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEV 349 (699)
Q Consensus 270 kE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEV 349 (699)
||.-.+..-|++++..|.-|+|.|.-..++.+=....=.. ....-....+.--+....+.=|||++.++...+.-.
T Consensus 29 kEl~~L~~R~~~lr~kl~le~k~RdAa~sl~~l~~~~~~~----~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~le~R~ 104 (124)
T PF15456_consen 29 KELRSLDSRLEYLRRKLALESKIRDAAHSLSRLYSSSSRR----ARFSRESSLKAEEELAESDRKCEELAQELWKLENRL 104 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc----cCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3666677777888888888888877666554432110000 000001112223344556677999998887766655
Q ss_pred HHHHH
Q 005373 350 EALKR 354 (699)
Q Consensus 350 e~LKr 354 (699)
-.+++
T Consensus 105 ~~~~~ 109 (124)
T PF15456_consen 105 AEVRQ 109 (124)
T ss_pred HHHHH
Confidence 55444
No 437
>PF15005 IZUMO: Izumo sperm-egg fusion
Probab=20.52 E-value=4.4e+02 Score=26.64 Aligned_cols=62 Identities=18% Similarity=0.223 Sum_probs=39.0
Q ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 253 LEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKE 324 (699)
Q Consensus 253 ie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~E 324 (699)
.+.+|..+.++++ ..+.-+++.+|..=...--+=+-+=.+|..=+.+++..|++++++++++
T Consensus 55 ~~a~~g~vd~~~L----------~~va~~~~~~lkrl~~s~~kg~~ll~EL~~~r~~~~~~lk~~lk~fq~~ 116 (160)
T PF15005_consen 55 EDAFMGVVDEDTL----------DKVAWSFKNQLKRLTDSDLKGEPLLKELVWMRQNQKKELKKALKQFQKK 116 (160)
T ss_pred hhhhhhhccHHHH----------HHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666665543 3333445555554444444445555577777788889999999999887
No 438
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=20.51 E-value=3.3e+02 Score=23.27 Aligned_cols=34 Identities=21% Similarity=0.356 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLR 258 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~K 258 (699)
+..+..++...+.++.+|..|....+.++..|-.
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4566677777777777777766666666655543
No 439
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=20.51 E-value=3.5e+02 Score=36.74 Aligned_cols=117 Identities=23% Similarity=0.180 Sum_probs=70.2
Q ss_pred hHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHhhhccHHHHHHHHHhh
Q 005373 295 RIEIVNSKLV---NELADAKVSAKRYMQDYEKERKE---------------RELIEEVCDELAKEIGEDKAEVEALKRES 356 (699)
Q Consensus 295 r~E~ln~KL~---~ELae~Kss~~~a~kelE~ERKa---------------RellE~vCdELAkeI~edkaEVe~LKres 356 (699)
..|.+|+|+. ++.+.+|-++-.|.+-.-+=+|+ +..||+||+=|--+..+++-+-.-|||.-
T Consensus 2163 ~ee~vrkrk~svmk~~s~~kPaVLEA~~~V~~ikka~L~EIrs~irpp~~l~i~me~Vc~LLgf~a~~w~~~qQ~LrrDD 2242 (3164)
T COG5245 2163 LEEEVRKRKGSVMKFKSSKKPAVLEAVLFVYKIKKASLREIRSFIRPPGDLCIEMEDVCDLLGFEAKIWFGEQQSLRRDD 2242 (3164)
T ss_pred hHHHHHHHhhhhHhhhhccccHHHHHHHHHHHhhHHHHHHHHHhcCCcccceeeHHHHHHHhcchhHHhhhHHHHhhhhh
Confidence 3444444442 55666665555555555555554 34599999888777777776666666431
Q ss_pred H---------------HHHhhhhh--------------------------------hHHHHHHHHHhHHHhhhhhhhhhh
Q 005373 357 M---------------KLREEVDD--------------------------------ERKMLQMAEVWREERVQMKLVDAK 389 (699)
Q Consensus 357 ~---------------k~reE~Ee--------------------------------ER~MLqmAEvWREERVQMKL~dAk 389 (699)
. .+|.=+|+ =+++|..-+..|+|=-..++. |.
T Consensus 2243 fi~~i~~y~~e~e~~~~~Rr~~E~~~~Sdp~ft~~~lnRaskacGPl~~Wl~~~cn~skvLE~~~plr~E~kRI~~E-~~ 2321 (3164)
T COG5245 2243 FIRIIGKYPDEIEFDLEARRFREARECSDPSFTGSILNRASKACGPLKRWLVRECNRSKVLEVKIPLREEEKRIDGE-AF 2321 (3164)
T ss_pred HHHHhccCCceeecCHHHHHHHHHHhcCCCcchhHHhhhhhhccCcHHHHHHHHhhHHHhhhhcccchhHHHhhhhH-Hh
Confidence 1 11111111 145677777888885555554 33
Q ss_pred hhhHHHhHHHHHHHHHHHHHHhhc
Q 005373 390 VAVEQKYSQMNKLVAELEAFLSSR 413 (699)
Q Consensus 390 ~~leeK~s~ldkL~~eLE~FL~sk 413 (699)
. .|+....-..|..+|++|+.-+
T Consensus 2322 ~-~e~~L~~~~~~s~dl~~~~l~~ 2344 (3164)
T COG5245 2322 L-VEDRLTLGKGLSSDLMTFKLRR 2344 (3164)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3666777788999999998764
No 440
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=20.38 E-value=1e+03 Score=24.99 Aligned_cols=86 Identities=16% Similarity=0.171 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLV 304 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~ 304 (699)
+..++..|..+++++..++........+++.+-.++ +..++.+...+.++++-+++.++= .+. .
T Consensus 82 l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------~~a~~~l~~a~~~~~r~~~L~~~g-~is---~ 145 (334)
T TIGR00998 82 LAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKL------------EQAREKLLQAELDLRRRVPLFKKG-LIS---R 145 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHhHHHHHHHHHHHHCC-CcC---H
Confidence 455556666666666666555444333333222221 233333444444555444443320 000 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005373 305 NELADAKVSAKRYMQDYEKERK 326 (699)
Q Consensus 305 ~ELae~Kss~~~a~kelE~ERK 326 (699)
.+|.+++..+..+..+|+.-+.
T Consensus 146 ~~~~~a~~~~~~a~~~l~~~~~ 167 (334)
T TIGR00998 146 EELDHARKALLSAKAALNAAIQ 167 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666654443
No 441
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=20.34 E-value=3e+02 Score=24.51 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 005373 223 SMVAALEAEVEQARTRIQELE 243 (699)
Q Consensus 223 Slv~aLk~EL~~Ar~rI~eL~ 243 (699)
.||.+|+-||.|=+..-.+|.
T Consensus 17 ~vl~~LqDE~~hm~~e~~~L~ 37 (79)
T PF06657_consen 17 EVLKALQDEFGHMKMEHQELQ 37 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 468888888888888888873
No 442
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=20.34 E-value=1.4e+03 Score=26.81 Aligned_cols=8 Identities=0% Similarity=0.210 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 005373 282 LKAEISRE 289 (699)
Q Consensus 282 lk~ELe~E 289 (699)
+...|+.+
T Consensus 86 l~~~le~~ 93 (475)
T PRK10361 86 VTTRMEAA 93 (475)
T ss_pred HHHHHHHH
Confidence 33333333
No 443
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=20.30 E-value=2.4e+02 Score=32.46 Aligned_cols=52 Identities=31% Similarity=0.524 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhh
Q 005373 296 IEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRES 356 (699)
Q Consensus 296 ~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres 356 (699)
+-.+|.+|++||++-+.-+.+.+--=|.=|| +|+.||--+||.. +-+++-++
T Consensus 274 lrelnqrL~~EL~~~raLaeqListEEsiRk------~vARELHDeIGQn---ITAIr~Qa 325 (497)
T COG3851 274 LRELNQRLQKELARNRALAEQLISTEESIRK------DVARELHDEIGQN---ITAIRTQA 325 (497)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHH------HHHHHHHHHhcch---HHHHHHHH
Confidence 5568999999999877666666544444443 4556666666654 44444443
No 444
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=20.23 E-value=1.7e+03 Score=27.60 Aligned_cols=35 Identities=29% Similarity=0.234 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHH
Q 005373 325 RKERELIEEVCDELAKEIGEDKAEVEALKRESMKL 359 (699)
Q Consensus 325 RKaRellE~vCdELAkeI~edkaEVe~LKres~k~ 359 (699)
.+.-++||.=+.....+|.+.++|+..||.+....
T Consensus 351 i~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~ 385 (717)
T PF09730_consen 351 INGLEILECKYKVAVSEVIQLKAELKALKSKYNEL 385 (717)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555544433
No 445
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=20.13 E-value=1.3e+03 Score=26.04 Aligned_cols=16 Identities=19% Similarity=0.258 Sum_probs=8.5
Q ss_pred hhcCCCCCCCceeeecc
Q 005373 592 WRSGPNNGDNYKIITVD 608 (699)
Q Consensus 592 wrS~~~n~~~~k~~~~e 608 (699)
|+||..++ -.|+|-+|
T Consensus 230 rks~~t~c-~rKvIK~E 245 (324)
T PF12126_consen 230 RKSCQTQC-PRKVIKME 245 (324)
T ss_pred ccchhhhC-Chhheecc
Confidence 56665554 25555544
Done!