Query 005373
Match_columns 699
No_of_seqs 98 out of 121
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 23:31:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005373.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005373hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ocy_A RAB guanine nucleotide 97.3 0.013 4.4E-07 56.1 17.4 130 202-354 5-136 (154)
2 3oja_B Anopheles plasmodium-re 96.7 0.035 1.2E-06 59.8 16.0 129 227-363 453-581 (597)
3 2eqb_B RAB guanine nucleotide 96.3 0.059 2E-06 48.3 12.6 91 228-344 3-94 (97)
4 1c1g_A Tropomyosin; contractIl 96.2 0.79 2.7E-05 42.4 27.5 16 228-243 11-26 (284)
5 1c1g_A Tropomyosin; contractIl 95.3 1.8 6.3E-05 39.9 27.3 18 305-322 146-163 (284)
6 1i84_S Smooth muscle myosin he 95.1 0.049 1.7E-06 64.9 9.5 18 227-244 861-878 (1184)
7 1i84_S Smooth muscle myosin he 95.0 0.004 1.4E-07 74.0 0.0 122 225-353 957-1080(1184)
8 2dfs_A Myosin-5A; myosin-V, in 94.2 0.71 2.4E-05 55.1 16.2 14 101-114 643-656 (1080)
9 2e7s_A RAB guanine nucleotide 93.7 0.32 1.1E-05 45.8 9.6 110 226-351 11-121 (135)
10 3vkg_A Dynein heavy chain, cyt 93.7 3.4 0.00012 54.7 22.0 124 230-365 1927-2067(3245)
11 2dfs_A Myosin-5A; myosin-V, in 93.7 1.3 4.4E-05 53.0 17.0 130 241-377 918-1054(1080)
12 3oja_B Anopheles plasmodium-re 93.0 1.7 5.7E-05 46.9 15.2 64 273-336 473-540 (597)
13 3u59_A Tropomyosin beta chain; 91.9 2.2 7.4E-05 37.5 11.9 75 225-303 11-95 (101)
14 3na7_A HP0958; flagellar bioge 91.8 11 0.00038 37.4 22.0 44 314-357 92-135 (256)
15 3u1c_A Tropomyosin alpha-1 cha 90.8 3.2 0.00011 36.7 11.9 75 225-303 11-95 (101)
16 2hg7_A Phage-like element PBSX 89.1 0.073 2.5E-06 47.9 0.0 39 278-316 64-102 (110)
17 3na7_A HP0958; flagellar bioge 88.6 21 0.00071 35.5 21.0 17 416-432 172-188 (256)
18 3vkg_A Dynein heavy chain, cyt 87.3 41 0.0014 45.0 22.9 36 229-264 1912-1947(3245)
19 2v71_A Nuclear distribution pr 87.3 24 0.00083 34.8 17.3 44 216-259 35-78 (189)
20 2fxo_A Myosin heavy chain, car 87.2 17 0.00059 33.0 17.3 76 271-353 14-89 (129)
21 2p22_C Protein SRN2; endosome, 86.7 24 0.00083 34.6 16.0 46 199-244 37-83 (192)
22 2w6b_A RHO guanine nucleotide 85.0 2.5 8.6E-05 34.5 6.7 21 285-305 32-52 (56)
23 2eqb_B RAB guanine nucleotide 84.2 21 0.00071 32.1 12.9 68 225-310 28-95 (97)
24 3ol1_A Vimentin; structural ge 84.1 20 0.0007 32.3 13.1 49 249-298 18-69 (119)
25 3q8t_A Beclin-1; autophagy, AT 83.6 20 0.00068 31.5 12.5 43 332-374 31-74 (96)
26 2w6b_A RHO guanine nucleotide 79.9 5 0.00017 32.8 6.6 38 303-340 15-52 (56)
27 3oja_A Leucine-rich immune mol 78.5 34 0.0011 36.2 14.5 23 331-353 433-455 (487)
28 3ghg_A Fibrinogen alpha chain; 78.1 43 0.0015 37.8 15.4 22 391-412 139-160 (562)
29 3oja_A Leucine-rich immune mol 77.9 22 0.00076 37.5 12.9 68 289-356 412-479 (487)
30 2v4h_A NF-kappa-B essential mo 77.4 16 0.00053 33.5 9.8 35 314-355 71-105 (110)
31 3swk_A Vimentin; cytoskeleton, 77.2 26 0.0009 30.2 10.9 56 300-355 16-78 (86)
32 1cii_A Colicin IA; bacteriocin 76.7 18 0.00063 40.2 11.9 25 261-285 389-413 (602)
33 2ocy_A RAB guanine nucleotide 76.3 56 0.0019 31.3 18.1 90 304-407 50-139 (154)
34 3iyk_A VP5; icosahedral virus; 73.6 31 0.0011 38.5 12.8 19 233-251 93-111 (526)
35 3cl3_D NF-kappa-B essential mo 71.6 11 0.00037 35.4 7.4 95 225-326 4-104 (130)
36 2fxo_A Myosin heavy chain, car 71.3 60 0.0021 29.4 17.1 68 281-355 52-119 (129)
37 3a7p_A Autophagy protein 16; c 70.3 79 0.0027 30.4 13.3 78 224-310 59-136 (152)
38 1h7c_A Tubulin-specific chaper 68.6 38 0.0013 30.5 10.1 93 330-431 11-103 (108)
39 3ol1_A Vimentin; structural ge 68.5 68 0.0023 28.9 15.4 78 225-307 22-99 (119)
40 3l4f_A RHO guanine nucleotide 68.2 14 0.00049 30.7 6.6 43 302-344 11-53 (61)
41 2i1j_A Moesin; FERM, coiled-co 67.5 12 0.00041 41.7 8.2 15 230-244 300-314 (575)
42 3tnu_A Keratin, type I cytoske 66.9 52 0.0018 29.9 10.9 63 223-286 31-93 (131)
43 3mxz_A Tubulin-specific chaper 64.8 78 0.0027 28.9 11.6 94 332-434 14-109 (116)
44 2i1j_A Moesin; FERM, coiled-co 64.7 7.7 0.00026 43.3 5.9 71 242-324 291-361 (575)
45 2e7s_A RAB guanine nucleotide 64.2 29 0.001 32.7 8.8 43 305-347 39-81 (135)
46 2b5u_A Colicin E3; high resolu 63.4 1.2E+02 0.0041 34.2 14.6 69 273-351 345-427 (551)
47 3i00_A HIP-I, huntingtin-inter 61.1 55 0.0019 30.0 9.9 66 223-310 15-80 (120)
48 3o0z_A RHO-associated protein 58.9 1.4E+02 0.0047 29.1 16.7 26 273-298 65-90 (168)
49 2efl_A Formin-binding protein 58.9 1.4E+02 0.0047 29.1 24.8 40 290-329 115-154 (305)
50 3haj_A Human pacsin2 F-BAR; pa 58.7 2E+02 0.0068 31.0 19.5 167 234-410 36-226 (486)
51 2v0o_A FCHO2, FCH domain only 57.5 1.4E+02 0.0047 28.8 19.4 54 301-362 125-178 (276)
52 1ic2_A Tropomyosin alpha chain 55.6 75 0.0026 26.7 9.2 27 225-251 8-34 (81)
53 3hnw_A Uncharacterized protein 54.1 1.1E+02 0.0038 28.4 10.9 28 284-311 68-95 (138)
54 3mq9_A Bone marrow stromal ant 52.8 2.2E+02 0.0076 29.8 15.1 25 341-365 444-468 (471)
55 2b5u_A Colicin E3; high resolu 52.6 3E+02 0.01 31.1 19.1 51 362-413 382-432 (551)
56 3ghg_A Fibrinogen alpha chain; 50.1 1.2E+02 0.0042 34.2 12.1 52 249-307 79-130 (562)
57 3tnu_B Keratin, type II cytosk 49.5 1.5E+02 0.0051 26.7 13.9 62 224-286 30-91 (129)
58 4ani_A Protein GRPE; chaperone 48.0 2.1E+02 0.0071 28.6 12.4 64 224-287 60-123 (213)
59 1f5n_A Interferon-induced guan 47.9 3.4E+02 0.012 30.5 21.9 104 303-409 464-579 (592)
60 2j69_A Bacterial dynamin-like 47.5 2.5E+02 0.0085 31.8 14.4 51 363-413 599-653 (695)
61 3u06_A Protein claret segregat 47.5 36 0.0012 36.6 7.4 32 226-257 6-37 (412)
62 4dyl_A Tyrosine-protein kinase 47.4 2.7E+02 0.0094 29.2 26.7 145 287-439 108-260 (406)
63 1jad_A PLC-beta, phospholipase 46.7 2.6E+02 0.0088 28.7 17.9 75 321-412 162-240 (251)
64 2efk_A CDC42-interacting prote 44.9 2.3E+02 0.0078 27.6 27.8 40 288-327 106-145 (301)
65 1qsd_A Protein (beta-tubulin b 44.4 1.5E+02 0.0051 26.5 9.7 87 332-430 10-97 (106)
66 3jsv_C NF-kappa-B essential mo 41.2 91 0.0031 27.9 7.7 40 313-359 48-87 (94)
67 3hnw_A Uncharacterized protein 41.1 1.8E+02 0.0062 27.0 10.1 9 303-311 94-102 (138)
68 1m1j_B Fibrinogen beta chain; 40.8 1.5E+02 0.005 32.9 10.9 39 222-260 120-158 (464)
69 4etp_A Kinesin-like protein KA 40.1 68 0.0023 34.3 8.0 26 225-250 5-30 (403)
70 3mq7_A Bone marrow stromal ant 39.6 2.4E+02 0.0081 26.3 11.5 67 226-310 28-94 (121)
71 2j1d_G DAAM1, disheveled-assoc 38.3 2.5E+02 0.0084 30.5 12.2 19 303-321 347-365 (483)
72 1f5n_A Interferon-induced guan 37.5 2.3E+02 0.008 31.8 12.1 58 276-348 525-582 (592)
73 3o0z_A RHO-associated protein 36.8 3E+02 0.01 26.7 20.0 54 299-359 63-116 (168)
74 3ok8_A Brain-specific angiogen 36.8 3.4E+02 0.012 27.3 13.4 88 279-373 103-190 (222)
75 3bas_A Myosin heavy chain, str 36.3 2E+02 0.007 24.6 12.0 65 274-352 18-82 (89)
76 3i2w_A Syndapin, LD46328P; EFC 36.0 3.2E+02 0.011 26.7 16.1 15 423-437 250-264 (290)
77 1k1f_A Breakpoint cluster regi 35.3 48 0.0016 28.2 4.6 42 225-266 28-69 (72)
78 2x3v_A Syndapin I, protein kin 34.8 3.6E+02 0.012 27.0 19.8 59 269-327 92-163 (337)
79 4e61_A Protein BIM1; EB1-like 34.5 68 0.0023 29.2 5.9 34 223-256 4-37 (106)
80 1deq_A Fibrinogen (alpha chain 33.0 5.1E+02 0.017 28.2 13.2 28 238-265 92-119 (390)
81 3s9g_A Protein hexim1; cyclin 32.3 1.7E+02 0.0057 26.6 7.9 34 335-378 60-93 (104)
82 3tnu_A Keratin, type I cytoske 30.9 3E+02 0.01 24.8 10.6 27 230-256 31-57 (131)
83 3mq9_A Bone marrow stromal ant 30.9 4.8E+02 0.016 27.2 15.5 24 331-354 448-471 (471)
84 1nfn_A Apolipoprotein E3; lipi 29.3 3.9E+02 0.013 25.7 11.2 26 292-317 93-118 (191)
85 2yy0_A C-MYC-binding protein; 29.2 65 0.0022 25.7 4.4 33 221-253 17-49 (53)
86 2x3v_A Syndapin I, protein kin 29.0 4.5E+02 0.015 26.3 24.3 15 424-438 264-278 (337)
87 4b9q_A Chaperone protein DNAK; 28.5 3.5E+02 0.012 29.8 11.6 14 329-342 563-576 (605)
88 3iyk_A VP5; icosahedral virus; 28.3 6.9E+02 0.023 28.2 16.3 22 404-425 281-303 (526)
89 3f1i_H Hepatocyte growth facto 28.1 3.3E+02 0.011 24.5 10.6 82 205-297 13-97 (98)
90 2q12_A DIP13 alpha, DCC-intera 27.6 4.3E+02 0.015 25.6 16.9 50 317-367 184-244 (265)
91 3l4f_A RHO guanine nucleotide 27.4 1.2E+02 0.0041 25.3 5.7 26 283-308 27-52 (61)
92 3u1c_A Tropomyosin alpha-1 cha 27.2 3.2E+02 0.011 23.9 11.9 50 345-409 42-91 (101)
93 1h7c_A Tubulin-specific chaper 26.8 2.6E+02 0.0088 25.0 8.3 30 232-261 9-38 (108)
94 2jee_A YIIU; FTSZ, septum, coi 26.5 2.4E+02 0.0081 24.6 7.7 51 220-270 17-70 (81)
95 3tnu_B Keratin, type II cytosk 26.2 3.6E+02 0.012 24.2 11.4 27 230-256 29-55 (129)
96 2v0o_A FCHO2, FCH domain only 26.0 4.4E+02 0.015 25.2 23.2 13 424-436 236-248 (276)
97 1s1c_X RHO-associated, coiled- 25.8 2.6E+02 0.009 23.8 7.7 37 257-296 22-58 (71)
98 3aco_A Pacsin2, protein kinase 25.4 5.4E+02 0.018 26.0 18.0 23 420-442 269-292 (350)
99 1deq_A Fibrinogen (alpha chain 25.1 6.9E+02 0.024 27.2 13.2 11 192-202 42-52 (390)
100 4dk0_A Putative MACA; alpha-ha 25.0 3.6E+02 0.012 27.0 10.0 31 225-255 72-102 (369)
101 3i00_A HIP-I, huntingtin-inter 24.7 4E+02 0.014 24.3 10.7 17 325-341 60-76 (120)
102 3m48_A General control protein 24.0 61 0.0021 24.1 3.0 24 331-354 5-28 (33)
103 1uix_A RHO-associated kinase; 23.4 3.5E+02 0.012 23.1 8.2 22 275-296 37-58 (71)
104 2v71_A Nuclear distribution pr 23.3 5.4E+02 0.018 25.3 19.3 25 292-316 57-81 (189)
105 3cl3_D NF-kappa-B essential mo 23.2 45 0.0015 31.3 2.7 59 302-372 6-64 (130)
106 3bas_A Myosin heavy chain, str 22.7 3.6E+02 0.012 23.0 10.1 42 305-346 14-55 (89)
107 1jad_A PLC-beta, phospholipase 22.6 6.4E+02 0.022 25.9 24.2 108 285-392 94-208 (251)
108 2oxj_A Hybrid alpha/beta pepti 22.3 69 0.0023 24.0 3.0 24 331-354 6-29 (34)
109 2ve7_A Kinetochore protein HEC 22.1 1.3E+02 0.0045 31.1 6.3 36 328-363 166-201 (315)
110 1go4_E MAD1 (mitotic arrest de 21.6 56 0.0019 29.4 2.9 74 319-410 12-88 (100)
111 3lay_A Zinc resistance-associa 21.3 3.4E+02 0.011 26.2 8.5 52 232-290 80-133 (175)
112 3aco_A Pacsin2, protein kinase 21.0 6.5E+02 0.022 25.4 14.3 17 347-363 192-208 (350)
113 3iv1_A Tumor susceptibility ge 21.0 4.1E+02 0.014 23.0 9.7 41 226-266 14-57 (78)
114 3f1i_H Hepatocyte growth facto 20.5 3.1E+02 0.01 24.7 7.3 46 307-356 43-88 (98)
115 3m91_A Proteasome-associated A 20.3 2E+02 0.0069 22.9 5.6 27 296-322 21-47 (51)
116 1x79_B RAB GTPase binding effe 20.1 5E+02 0.017 23.7 12.4 25 274-298 10-34 (112)
117 3qne_A Seryl-tRNA synthetase, 20.1 4.4E+02 0.015 29.2 10.2 35 222-256 32-66 (485)
No 1
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=97.29 E-value=0.013 Score=56.11 Aligned_cols=130 Identities=16% Similarity=0.210 Sum_probs=98.7
Q ss_pred hHHHHHhhhhcc-cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHH
Q 005373 202 PAEVRQIYSHMK-HLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFID 280 (699)
Q Consensus 202 s~ellkvlnri~-leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~ 280 (699)
|+.|..-+|+.- |+|. +..++.+|..++.+|++|+..+.. ++.+... + .-+.+-+.
T Consensus 5 StKLI~Ain~qs~LeD~-------L~~~R~el~~~~~ri~~lE~~r~~----~~~l~~~----~--------~~~~~e~~ 61 (154)
T 2ocy_A 5 STQLIESVDKQSHLEEQ-------LNKSLKTIASQKAAIENYNQLKED----YNTLKRE----L--------SDRDDEVK 61 (154)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHTTHHHHHH----HHHHHTH----H--------HHHHHHHH
T ss_pred HHHHHHHHHhhccHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH----H--------hhhhHHHH
Confidence 366777777765 6665 678889999999999999986643 3333222 1 23566677
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHH
Q 005373 281 DLKAEISRERKNRQRIEIVNSKLVNELADAKVS-AKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKR 354 (699)
Q Consensus 281 slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss-~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKr 354 (699)
.|.++|..|+..|..+|....++-.||-+.-.| |..|=+=.-.+|+.+..+|.=-+.|-+.+++-+.-++.|-.
T Consensus 62 ~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ 136 (154)
T 2ocy_A 62 RLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTL 136 (154)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999997655 55555556678999999998888888888877666665543
No 2
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.65 E-value=0.035 Score=59.81 Aligned_cols=129 Identities=16% Similarity=0.192 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 005373 227 ALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNE 306 (699)
Q Consensus 227 aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~E 306 (699)
.|+.|+.+-+..|+.|+.+.......+..+-.++.+.+..+.....+.. . .++.|+. ..++++..+.++.++
T Consensus 453 ~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~-~----~~~~l~~---~~~~~~~~~~~~~~~ 524 (597)
T 3oja_B 453 QLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLA-R----SSDNLNK---VFTHLKERQAFKLRE 524 (597)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSS-C----HHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccC-C----HHHHHHH---HHHHHHhhhhhhHHH
Confidence 3555666666666666666666555555555554444443331111000 0 0011111 122333455566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhh
Q 005373 307 LADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEV 363 (699)
Q Consensus 307 Lae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~reE~ 363 (699)
+...+.++.+-.++|++-++.++.||..+++.-+.+.+.++|+..++++.....+++
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 525 TQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666677777777788887888888888888887777777777777777666554444
No 3
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=96.31 E-value=0.059 Score=48.27 Aligned_cols=91 Identities=23% Similarity=0.282 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 005373 228 LEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNEL 307 (699)
Q Consensus 228 Lk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~EL 307 (699)
|..+|+.+|.+|++|+.+.... .+-+..|..+|..|+..|..+|....++-.||
T Consensus 3 ~~~~~e~lre~l~~le~~~~~~--------------------------~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~El 56 (97)
T 2eqb_B 3 LGSNYNQLKEDYNTLKRELSDR--------------------------DDEVKRLREDIAKENELRTKAEEEADKLNKEV 56 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHhh--------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888655543 33344467788888999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 005373 308 ADAKVS-AKRYMQDYEKERKERELIEEVCDELAKEIGE 344 (699)
Q Consensus 308 ae~Kss-~~~a~kelE~ERKaRellE~vCdELAkeI~e 344 (699)
-+.-.| |..|=+=.=.+|+.+..+|.--+.|...|+|
T Consensus 57 EeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 57 EDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 886654 4555555556678887777777777666654
No 4
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.18 E-value=0.79 Score=42.37 Aligned_cols=16 Identities=38% Similarity=0.424 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 005373 228 LEAEVEQARTRIQELE 243 (699)
Q Consensus 228 Lk~EL~~Ar~rI~eL~ 243 (699)
|+.+++.+...+.+|.
T Consensus 11 l~~~~~~~~~~~~~l~ 26 (284)
T 1c1g_A 11 LKLDKENALDRADEAE 26 (284)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHH
Confidence 3333333333333333
No 5
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=95.26 E-value=1.8 Score=39.90 Aligned_cols=18 Identities=33% Similarity=0.344 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005373 305 NELADAKVSAKRYMQDYE 322 (699)
Q Consensus 305 ~ELae~Kss~~~a~kelE 322 (699)
.+|.+++..+..+-.+++
T Consensus 146 ~~l~~~~~~~~~~~~~~~ 163 (284)
T 1c1g_A 146 IQLKEAKHIAEDADRKYE 163 (284)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444434433
No 6
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.14 E-value=0.049 Score=64.90 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005373 227 ALEAEVEQARTRIQELET 244 (699)
Q Consensus 227 aLk~EL~~Ar~rI~eL~~ 244 (699)
.|+.||...+..+..++.
T Consensus 861 ~L~~eL~el~~~L~~le~ 878 (1184)
T 1i84_S 861 AKDEELQRTKERQQKAEA 878 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 7
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.02 E-value=0.004 Score=73.98 Aligned_cols=122 Identities=17% Similarity=0.305 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKA--AWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSK 302 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~--awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~K 302 (699)
+..|+.+|+..+..+.+|..+......+++.+-.++..-+. .--.++...+...+..+..+|+.+......++....+
T Consensus 957 l~~L~~eleele~~l~~l~~e~~~le~~l~~l~~el~~lee~l~~l~~e~~~le~~i~~l~~~l~~~e~k~~~lek~~~~ 1036 (1184)
T 1i84_S 957 MLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNK 1036 (1184)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666666665555555555444433222 2223344455566666666666665555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHH
Q 005373 303 LVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALK 353 (699)
Q Consensus 303 L~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LK 353 (699)
|..++.+.+.. ++.+++.+.-+++...++..++.+.+.+++.+.
T Consensus 1037 le~el~ele~~-------le~~e~~~~ele~~~~~le~el~~l~~el~el~ 1080 (1184)
T 1i84_S 1037 HESMISELEVR-------LKKEEKSRQELEKIKRKLEGESSDLHEQIAELQ 1080 (1184)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555554433 333333333334444444444444444443333
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.21 E-value=0.71 Score=55.13 Aligned_cols=14 Identities=21% Similarity=-0.028 Sum_probs=7.4
Q ss_pred hHHHHHhhhccccc
Q 005373 101 SARTLAAGLWRLQL 114 (699)
Q Consensus 101 SaRkLAA~LWel~~ 114 (699)
|.-.|-.+|=..+|
T Consensus 643 sL~~Lm~~L~~t~p 656 (1080)
T 2dfs_A 643 SLHLLMETLNATTP 656 (1080)
T ss_dssp HHHHHHHHHHSSEE
T ss_pred HHHHHHHHHHhcCC
Confidence 34556566555444
No 9
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=93.73 E-value=0.32 Score=45.81 Aligned_cols=110 Identities=16% Similarity=0.222 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 005373 226 AALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVN 305 (699)
Q Consensus 226 ~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ 305 (699)
..++.+|.-.+.+|++|+..+. +++.+.+.+ ..+..-+..|..+|..|+..|..+|.-..++-.
T Consensus 11 ~~~r~~l~~~~~~~~~le~l~~----~l~~l~~~l------------~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ 74 (135)
T 2e7s_A 11 NKSLKTIASQKAAIENYNQLKE----DYNTLKREL------------SDRDDEVKRLREDIAKENELRTKAEEEADKLNK 74 (135)
T ss_dssp THHHHHHHHHHHHHHHHHHHHH----HHHHHHHHT------------TTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888888888888555 333333333 133444666899999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHH
Q 005373 306 ELADAKVS-AKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEA 351 (699)
Q Consensus 306 ELae~Kss-~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~ 351 (699)
||.+.-.| |..|=+=.-.+|+.+..+|.=-+.|-..+++-+.-++.
T Consensus 75 ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~ 121 (135)
T 2e7s_A 75 EVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDT 121 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99997655 55565556667888888888888888877766544443
No 10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.73 E-value=3.4 Score=54.66 Aligned_cols=124 Identities=15% Similarity=0.210 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHH
Q 005373 230 AEVEQARTRIQELETERRSS-------KKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERK-NRQRIEIVNS 301 (699)
Q Consensus 230 ~EL~~Ar~rI~eL~~E~~s~-------k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk-~Rkr~E~ln~ 301 (699)
.-|..|..+|.+|..+-... .++.+.+|.++..++. +-++.++.++..+++++.+-+ ...+-+....
T Consensus 1927 ~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~-----~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~ 2001 (3245)
T 3vkg_A 1927 KKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQ-----AAEIKQKDARELQVQLDVRNKEIAVQKVKAYA 2001 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555777776666554333 3455667777766654 334444444444444443211 1111111112
Q ss_pred HHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhh
Q 005373 302 KLV---------NELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDD 365 (699)
Q Consensus 302 KL~---------~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~reE~Ee 365 (699)
.|+ .+|++++..+..+...|. -+++.-.++-..|..++++.+++.+|-+++..|++.
T Consensus 2002 dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~-------~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~ 2067 (3245)
T 3vkg_A 2002 DLEKAEPTGPLREEVEQLENAANELKLKQD-------EIVATITALEKSIATYKEEYATLIRETEQIKTESSK 2067 (3245)
T ss_dssp CC-------CHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCCCChHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 233333333333333332 223333444455555666666665555555555543
No 11
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.70 E-value=1.3 Score=52.99 Aligned_cols=130 Identities=17% Similarity=0.269 Sum_probs=50.0
Q ss_pred HHHHHHhhhHHHHHHHHHhhHHHHHHhhh------hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 005373 241 ELETERRSSKKKLEHFLRKVSEEKAAWRS------REHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSA 314 (699)
Q Consensus 241 eL~~E~~s~k~eie~l~KqlaEEK~awKs------kE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~ 314 (699)
.|.+......++|..|-.+|.++...++. ...++...-+..|+.+|++..+..+..+.+ ..++.+.+.-+
T Consensus 918 ~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~----~~~v~~L~~e~ 993 (1080)
T 2dfs_A 918 RYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNA----TNRVLSLQEEI 993 (1080)
T ss_dssp ---------------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 34444455566677777777664443331 122345556667766666665543333322 22333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhh-hhHHHHHHHHHhH
Q 005373 315 KRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVD-DERKMLQMAEVWR 377 (699)
Q Consensus 315 ~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~reE~E-eER~MLqmAEvWR 377 (699)
...-++|++..+..+.+|+.++++-. +.+..|..|+.+-.+++..++ -|..++..++.+.
T Consensus 994 ~~l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~~~~ 1054 (1080)
T 2dfs_A 994 AKLRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEIT 1054 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555556666655542 344555555555555554442 2335666665554
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.00 E-value=1.7 Score=46.88 Aligned_cols=64 Identities=13% Similarity=0.183 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 273 EKIRAFIDDLKAEISRERKNRQ----RIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCD 336 (699)
Q Consensus 273 eki~a~i~slk~ELe~ERk~Rk----r~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCd 336 (699)
....+.++.++.+++..+..-+ .++....+|.+++..++.-......++.+.+++.+-..+.++
T Consensus 473 ~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (597)
T 3oja_B 473 IQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETE 540 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchh
Confidence 3455566667777766554432 222333555555555555555554444444444433333333
No 13
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=91.90 E-value=2.2 Score=37.51 Aligned_cols=75 Identities=16% Similarity=0.378 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhh------HHHHHHHHHHHHHHHHHHHHHhhh----
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSR------EHEKIRAFIDDLKAEISRERKNRQ---- 294 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKsk------E~eki~a~i~slk~ELe~ERk~Rk---- 294 (699)
|.+|+.|.+.|..++.++++..+..... ..++.+|-.+.+.| +.|++...+......|+...+.+.
T Consensus 11 m~~lk~e~e~a~d~ae~~e~~~k~~e~~----~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~ 86 (101)
T 3u59_A 11 MQMLKLDKENAIDRAEQAEADKKQAEDR----CKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEA 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999988888887765444332 22333333332222 456777778888888888888887
Q ss_pred hHHHHHHHH
Q 005373 295 RIEIVNSKL 303 (699)
Q Consensus 295 r~E~ln~KL 303 (699)
.+.+||||+
T Consensus 87 evasLnRri 95 (101)
T 3u59_A 87 EVASLNRRI 95 (101)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455566665
No 14
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=91.78 E-value=11 Score=37.44 Aligned_cols=44 Identities=16% Similarity=0.247 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhH
Q 005373 314 AKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESM 357 (699)
Q Consensus 314 ~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~ 357 (699)
+..+.++++.-.+....+|+-=-++...|.+.++++..++.+..
T Consensus 92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~ 135 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEML 135 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666666666776666666666666666665554433
No 15
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=90.81 E-value=3.2 Score=36.66 Aligned_cols=75 Identities=9% Similarity=0.286 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhh------HHHHHHHHHHHHHHHHHHHHHhhh----
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSR------EHEKIRAFIDDLKAEISRERKNRQ---- 294 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKsk------E~eki~a~i~slk~ELe~ERk~Rk---- 294 (699)
|.+|+.|.+.|..++.+++...+..... ..++.+|-.+...| +.|++...+...+..|+...+.+-
T Consensus 11 m~~lk~e~e~a~drae~~e~~~k~~e~~----~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ 86 (101)
T 3u1c_A 11 MQMLKLDKENALDRAEQAEADKKAAEER----SKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAES 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999998888888887654433322 22233333322221 457777888888888888888888
Q ss_pred hHHHHHHHH
Q 005373 295 RIEIVNSKL 303 (699)
Q Consensus 295 r~E~ln~KL 303 (699)
.+.+||||+
T Consensus 87 ev~~L~Rri 95 (101)
T 3u1c_A 87 EVASLNRRI 95 (101)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555666665
No 16
>2hg7_A Phage-like element PBSX protein XKDW; dimer, GFT structural genomics, PSI, protein structure initiative; NMR {Bacillus subtilis} SCOP: d.186.2.1
Probab=89.15 E-value=0.073 Score=47.92 Aligned_cols=39 Identities=36% Similarity=0.468 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005373 278 FIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKR 316 (699)
Q Consensus 278 ~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~ 316 (699)
.|+.+..||..|+-+||++|-+|.-|++||+.+|..+..
T Consensus 64 q~~~laqels~eklarkqleeln~~Lg~Els~iKl~lL~ 102 (110)
T 2hg7_A 64 QVELLAQELSQEKLARKQLEELNKTLGNELSDIKLSLLS 102 (110)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677888899999999999999999999999977643
No 17
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=88.58 E-value=21 Score=35.52 Aligned_cols=17 Identities=18% Similarity=0.067 Sum_probs=9.2
Q ss_pred CCChhhHHHHHHHHHHH
Q 005373 416 NPDIQEMKEAEMLRQAA 432 (699)
Q Consensus 416 ~~d~~~~r~ae~~rqs~ 432 (699)
..+...+..=+.+|...
T Consensus 172 ~i~~~lL~~Yerir~~~ 188 (256)
T 3na7_A 172 KTEPKIYSFYERIRRWA 188 (256)
T ss_dssp TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhC
Confidence 44555555555666543
No 18
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=87.35 E-value=41 Score=45.00 Aligned_cols=36 Identities=6% Similarity=0.186 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHH
Q 005373 229 EAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEK 264 (699)
Q Consensus 229 k~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK 264 (699)
+.||...+.|++-=..--.....+|+.|-++|++.+
T Consensus 1912 ~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~ 1947 (3245)
T 3vkg_A 1912 RDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKN 1947 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443333333334445555555555443
No 19
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=87.26 E-value=24 Score=34.79 Aligned_cols=44 Identities=27% Similarity=0.350 Sum_probs=23.9
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 005373 216 DQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRK 259 (699)
Q Consensus 216 eq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~Kq 259 (699)
|-+.++=-|=..|..||.++..++++|.......+.+++.+-.+
T Consensus 35 EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K 78 (189)
T 2v71_A 35 EFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEK 78 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555666666666666666665554444444444333
No 20
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=87.24 E-value=17 Score=33.05 Aligned_cols=76 Identities=22% Similarity=0.306 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHH
Q 005373 271 EHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVE 350 (699)
Q Consensus 271 E~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe 350 (699)
|-.+...-|..+++.|+.+-+.|+.+|.-|.+|..|..++. ..|+.|+-.-.=.|+.|+.|...=.+.+..|.
T Consensus 14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~-------~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~ 86 (129)
T 2fxo_A 14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQ-------LQVQAEQDNLADAEERCDQLIKNKIQLEAKVK 86 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33445566778899999999999999999999999987655 44566666666678888888877667777776
Q ss_pred HHH
Q 005373 351 ALK 353 (699)
Q Consensus 351 ~LK 353 (699)
.|.
T Consensus 87 el~ 89 (129)
T 2fxo_A 87 EMN 89 (129)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 21
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=86.72 E-value=24 Score=34.57 Aligned_cols=46 Identities=15% Similarity=0.308 Sum_probs=29.4
Q ss_pred CCChHHHHHhhhhc-ccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 005373 199 LKTPAEVRQIYSHM-KHLDQQVSAVSMVAALEAEVEQARTRIQELET 244 (699)
Q Consensus 199 lkts~ellkvlnri-~leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~ 244 (699)
..+..+|..+++.. -+.+..+..+.-+.++..+++..+..+.+|..
T Consensus 37 ~LS~~eL~~LL~~~~dlL~~~v~~l~~~q~~~~~~e~l~s~ae~ll~ 83 (192)
T 2p22_C 37 LLSSKEIIDLIQTHRHQLELYVTKFNPLTDFAGKIHAFRDQFKQLEE 83 (192)
T ss_dssp SCTTHHHHHHHHHCHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHhChHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHH
Confidence 34556888888776 43443343343377888888888777777743
No 22
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=84.97 E-value=2.5 Score=34.54 Aligned_cols=21 Identities=19% Similarity=0.450 Sum_probs=17.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHH
Q 005373 285 EISRERKNRQRIEIVNSKLVN 305 (699)
Q Consensus 285 ELe~ERk~Rkr~E~ln~KL~~ 305 (699)
-||.|.|+|+++|.+=+|+.+
T Consensus 32 ~lEeEqkARk~LE~~vrk~~k 52 (56)
T 2w6b_A 32 SLEEEQRARKDLEKLVRKVLK 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 488999999999999998843
No 23
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=84.24 E-value=21 Score=32.07 Aligned_cols=68 Identities=22% Similarity=0.376 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLV 304 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~ 304 (699)
+..|..+|...+.+-.+.++++.....+|+.|.-.|=+|-- .+ ...+|+.|-.+|.-|.+|.
T Consensus 28 ~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN-----------~M-------Va~ar~e~~~~e~kn~~L~ 89 (97)
T 2eqb_B 28 VKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEAN-----------NM-------VADARKEKYAIEILNKRLT 89 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HH-------HHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444555555444444311 11 2346888999999999999
Q ss_pred HHHHHH
Q 005373 305 NELADA 310 (699)
Q Consensus 305 ~ELae~ 310 (699)
.+|.|.
T Consensus 90 ~qL~d~ 95 (97)
T 2eqb_B 90 EQLREK 95 (97)
T ss_dssp HHHHHH
T ss_pred HHHhhc
Confidence 999874
No 24
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=84.12 E-value=20 Score=32.35 Aligned_cols=49 Identities=20% Similarity=0.307 Sum_probs=27.2
Q ss_pred hHHHHHHHHHhhHH---HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 005373 249 SKKKLEHFLRKVSE---EKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEI 298 (699)
Q Consensus 249 ~k~eie~l~KqlaE---EK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ 298 (699)
+..+|..|.++|.. |++.- --|.+.++.+++++|...+.|-..|..+|.
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l-~leldn~~~~~edfk~KyE~E~~~r~~~E~ 69 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARV-EVERDNLAEDIMRLREKLQEEMLQREEAEN 69 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44556666665532 22211 124566666677777777777666665553
No 25
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=83.62 E-value=20 Score=31.52 Aligned_cols=43 Identities=23% Similarity=0.363 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHhhHHHHhhh-hhhHHHHHHHH
Q 005373 332 EEVCDELAKEIGEDKAEVEALKRESMKLREEV-DDERKMLQMAE 374 (699)
Q Consensus 332 E~vCdELAkeI~edkaEVe~LKres~k~reE~-EeER~MLqmAE 374 (699)
|.-..+++.+|...++|.+.|..+-.+.|.+. ..-+.++.+-+
T Consensus 31 Eke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~d 74 (96)
T 3q8t_A 31 EKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDD 74 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33345788999999999999998888877776 66666666554
No 26
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=79.90 E-value=5 Score=32.83 Aligned_cols=38 Identities=21% Similarity=0.418 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 303 LVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAK 340 (699)
Q Consensus 303 L~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAk 340 (699)
|..|+.+.+.-+++.-+-||.|.|||.-||.+-..+.+
T Consensus 15 LkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k 52 (56)
T 2w6b_A 15 LKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLK 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455556666667778889999999999999877754
No 27
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=78.53 E-value=34 Score=36.17 Aligned_cols=23 Identities=17% Similarity=-0.015 Sum_probs=9.1
Q ss_pred HHHHHHHHHHhhhccHHHHHHHH
Q 005373 331 IEEVCDELAKEIGEDKAEVEALK 353 (699)
Q Consensus 331 lE~vCdELAkeI~edkaEVe~LK 353 (699)
++..+++...+|...+.|-+.++
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~ 455 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLK 455 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhh
Confidence 33334444444444433333333
No 28
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=78.13 E-value=43 Score=37.75 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=15.3
Q ss_pred hhHHHhHHHHHHHHHHHHHHhh
Q 005373 391 AVEQKYSQMNKLVAELEAFLSS 412 (699)
Q Consensus 391 ~leeK~s~ldkL~~eLE~FL~s 412 (699)
.|++-...|-+|..+|..=|++
T Consensus 139 nLedq~~kIQRLEvDIdiqirs 160 (562)
T 3ghg_A 139 NVRAQLVDMKRLEVDIDIKIRS 160 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566677777888887877
No 29
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=77.87 E-value=22 Score=37.55 Aligned_cols=68 Identities=13% Similarity=0.083 Sum_probs=52.5
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhh
Q 005373 289 ERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRES 356 (699)
Q Consensus 289 ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres 356 (699)
..+..++.|.+-.++-.|...++.-.+..-.+.++.++..+.++.+-+|+-+.|.+.++.+-.+.+.-
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (487)
T 3oja_A 412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVRE 479 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHH
Confidence 55666667777777777777777777777777888888888889999999999988888887776543
No 30
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=77.44 E-value=16 Score=33.55 Aligned_cols=35 Identities=31% Similarity=0.485 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHh
Q 005373 314 AKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRE 355 (699)
Q Consensus 314 ~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKre 355 (699)
+.=|-.|.+.||.+|+-+ +.++.+++.+++.|.++
T Consensus 71 v~IY~~DF~aERadREkl-------~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 71 ADIYKADFQAERHAREKL-------VEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchhhHHHH-------HhHHHHHHHHHHHHHHH
Confidence 344566777777777643 34444555555555544
No 31
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=77.21 E-value=26 Score=30.17 Aligned_cols=56 Identities=18% Similarity=0.247 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hccHHHHHHHHHh
Q 005373 300 NSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEI-------GEDKAEVEALKRE 355 (699)
Q Consensus 300 n~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI-------~edkaEVe~LKre 355 (699)
|.+|.-|+-.++.++-.+..-||.|-..|.-+|.-..-|-|.+ -+.++.|+.|+.|
T Consensus 16 ~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eE 78 (86)
T 3swk_A 16 KARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEE 78 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777888888888888888888888887776554444444 4566666666543
No 32
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=76.73 E-value=18 Score=40.25 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=13.8
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHH
Q 005373 261 SEEKAAWRSREHEKIRAFIDDLKAE 285 (699)
Q Consensus 261 aEEK~awKskE~eki~a~i~slk~E 285 (699)
+++.+.-+-+|++.++.++-.++..
T Consensus 389 A~d~l~a~~kek~~~~n~~a~~~~K 413 (602)
T 1cii_A 389 ANDALNALLKEKENIRNQLSGINQK 413 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 4444444445566666666555555
No 33
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=76.28 E-value=56 Score=31.33 Aligned_cols=90 Identities=24% Similarity=0.302 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHHhHHHhhhh
Q 005373 304 VNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQM 383 (699)
Q Consensus 304 ~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQM 383 (699)
..+++++..-+.+.+.+|..|++.|.-.|..+..+-.++.+.-+-+ .++=-.|+--|- ---..++-
T Consensus 50 ~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasL-------------FeEAN~MVa~ar-~~~~~~e~ 115 (154)
T 2ocy_A 50 KRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL-------------FDEANNMVADAR-KEKYAIEI 115 (154)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHH-HHHHHHHH
Confidence 3456677888888899999999999999999998887777664422 233344543220 00112233
Q ss_pred hhhhhhhhhHHHhHHHHHHHHHHH
Q 005373 384 KLVDAKVAVEQKYSQMNKLVAELE 407 (699)
Q Consensus 384 KL~dAk~~leeK~s~ldkL~~eLE 407 (699)
|...-+.++.+|...|+.|+.+|.
T Consensus 116 r~~~L~~ql~e~~~~l~~lq~ql~ 139 (154)
T 2ocy_A 116 LNKRLTEQLREKDTLLDTLTLQLK 139 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455666666666665554
No 34
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=73.63 E-value=31 Score=38.54 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHhhhHH
Q 005373 233 EQARTRIQELETERRSSKK 251 (699)
Q Consensus 233 ~~Ar~rI~eL~~E~~s~k~ 251 (699)
..-+..|+||+.|++..+-
T Consensus 93 ~~~~~Kl~eLE~e~k~d~~ 111 (526)
T 3iyk_A 93 RGIQAKLKELEDEQRNELV 111 (526)
T ss_pred HHHHHHHHHHHHHHhhHHH
Confidence 3577788888887776654
No 35
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=71.57 E-value=11 Score=35.40 Aligned_cols=95 Identities=17% Similarity=0.274 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhH---HHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVS---EEKAAWR---SREHEKIRAFIDDLKAEISRERKNRQRIEI 298 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~Kqla---EEK~awK---skE~eki~a~i~slk~ELe~ERk~Rkr~E~ 298 (699)
|.+|-.||+.|+.+..+-+.++++.+...-.+-+++. -|...-| .-.-++++=-+++|..+|.-||.. +..
T Consensus 4 vtSL~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaalkmEr~~---~~e 80 (130)
T 3cl3_D 4 ASGSLGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQA---ASE 80 (130)
T ss_dssp -----------------------------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 5778899999999999999999888766544444332 2222211 224467777889999999888765 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 299 VNSKLVNELADAKVSAKRYMQDYEKERK 326 (699)
Q Consensus 299 ln~KL~~ELae~Kss~~~a~kelE~ERK 326 (699)
--+ -|+..+.+..+..+||.+-=|
T Consensus 81 EKr----kLAqLQ~AY~~LfqeYd~~lK 104 (130)
T 3cl3_D 81 EKR----KLAQLQVAYHQLFQEYDNHIK 104 (130)
T ss_dssp HHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 223 357788889999999987333
No 36
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=71.25 E-value=60 Score=29.43 Aligned_cols=68 Identities=24% Similarity=0.288 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHh
Q 005373 281 DLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRE 355 (699)
Q Consensus 281 slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKre 355 (699)
.|...|..|+-+-.-+|-...+|...-.+...-+.-+-..+|. .|+.+++|...-...+.++..|+..
T Consensus 52 ~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rlee-------eee~~~~L~~~kkkle~e~~~Lk~~ 119 (129)
T 2fxo_A 52 DLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLED-------EEEMNAELTAKKRKLEDECSELKRD 119 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666655544444444444344443 3444445544444445555555443
No 37
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=70.32 E-value=79 Score=30.39 Aligned_cols=78 Identities=17% Similarity=0.212 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 005373 224 MVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKL 303 (699)
Q Consensus 224 lv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL 303 (699)
+|+.++++++ .|..|..|....+.+|..|- +| ..=|+|--+.+++.+.+++-++..=-...++++.-|.+|
T Consensus 59 ~vs~~~~~~~----~I~~L~~El~~l~~ki~dLe----ee-l~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 59 IVSHDDALLN----TLAILQKELKSKEQEIRRLK----EV-IALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHH----HHHHHHHHHHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555533 56666666666665544432 22 122556677788888888888877666677788888888
Q ss_pred HHHHHHH
Q 005373 304 VNELADA 310 (699)
Q Consensus 304 ~~ELae~ 310 (699)
+.=+-.-
T Consensus 130 V~RWM~r 136 (152)
T 3a7p_A 130 VARWLKK 136 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666543
No 38
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=68.60 E-value=38 Score=30.45 Aligned_cols=93 Identities=16% Similarity=0.195 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHHhHHHhhhhhhhhhhhhhHHHhHHHHHHHHHHHHH
Q 005373 330 LIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAF 409 (699)
Q Consensus 330 llE~vCdELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~eLE~F 409 (699)
+--.+|..|+|+-.-|+.|+........+++.+-..|. +|.-.+.- |.+.+--|.+=..-|.....+|+.|
T Consensus 11 Ikt~~vkRL~KE~~~Y~kE~~~q~~riek~k~e~~Dey-~iKkq~ev--------l~Et~~mipd~~~Rl~~a~~~L~~~ 81 (108)
T 1h7c_A 11 IKTGVVRRLVKERVMYEKEAKQQEEKIEKMRAEDGENY-DIKKQAEI--------LQESRMMIPDCQRRLEAAYLDLQRI 81 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCT-HHHHHHHH--------HHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHHH--------HHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 33457777888888888888887777777766533333 33333222 2333334555555677778888999
Q ss_pred HhhcCCCCChhhHHHHHHHHHH
Q 005373 410 LSSRSINPDIQEMKEAEMLRQA 431 (699)
Q Consensus 410 L~sk~~~~d~~~~r~ae~~rqs 431 (699)
|..-....+..++..|......
T Consensus 82 l~~e~~~~~~ee~~~Ake~l~~ 103 (108)
T 1h7c_A 82 LENEKDLEEAEEYKEARLVLDS 103 (108)
T ss_dssp HHHCGGGTTSHHHHHHHHHHHH
T ss_pred HHhcccCCCcHHHHHHHHHHHH
Confidence 9864333456777777544443
No 39
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=68.45 E-value=68 Score=28.92 Aligned_cols=78 Identities=18% Similarity=0.270 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLV 304 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~ 304 (699)
|..|+..|+.+-..--.|+-|....+-.++.|..++.+|...+ ..+.+.|..+|..++++=-.|--+|.--.-|.
T Consensus 22 I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r-----~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~ 96 (119)
T 3ol1_A 22 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQR-----EEAENTLQSFRQDVDNASLARLDLERKVESLQ 96 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-----HHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence 4455555555444444555555666777788888888876644 33556677777777766555544444333344
Q ss_pred HHH
Q 005373 305 NEL 307 (699)
Q Consensus 305 ~EL 307 (699)
.||
T Consensus 97 eEl 99 (119)
T 3ol1_A 97 EEI 99 (119)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 40
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=68.24 E-value=14 Score=30.74 Aligned_cols=43 Identities=19% Similarity=0.417 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 005373 302 KLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGE 344 (699)
Q Consensus 302 KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~e 344 (699)
-|..|+.+.+.-.++.-+=+|.|.++|.-||.+|-.+.+...+
T Consensus 11 alkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~~n~ 53 (61)
T 3l4f_A 11 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMND 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3455666666677777777889999999999999888877543
No 41
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=67.48 E-value=12 Score=41.75 Aligned_cols=15 Identities=20% Similarity=0.339 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 005373 230 AEVEQARTRIQELET 244 (699)
Q Consensus 230 ~EL~~Ar~rI~eL~~ 244 (699)
.|+++-.++.+|-..
T Consensus 300 ~e~qqm~~~a~e~~~ 314 (575)
T 2i1j_A 300 IDVQQMKAQAREEKL 314 (575)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456655555554433
No 42
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=66.95 E-value=52 Score=29.87 Aligned_cols=63 Identities=19% Similarity=0.287 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 005373 223 SMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEI 286 (699)
Q Consensus 223 Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~EL 286 (699)
..+.+.++|+-..|..|+.|..|-.+.+..-..|-..|++=.. +-..+...+.+.|..+..+|
T Consensus 31 ~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~-~~~~~l~~~q~~i~~lE~eL 93 (131)
T 3tnu_A 31 ELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKG-RYCMQLAQIQEMIGSVEEQL 93 (131)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3466778888888888888888888877776777666665433 33444455555555555554
No 43
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=64.84 E-value=78 Score=28.86 Aligned_cols=94 Identities=16% Similarity=0.269 Sum_probs=53.6
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHHhHHHhhhhhhhhhhhhhHHHhHHHHHHHHHHHHHHh
Q 005373 332 EEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLS 411 (699)
Q Consensus 332 E~vCdELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~eLE~FL~ 411 (699)
=.+|..|+|+..-|+.|+..-.....++..+-..+-.+=|--+| |.|.+--|-+=..-|.....+|+.||.
T Consensus 14 tg~vkRL~KE~~~Y~kE~~~q~~kiekmk~e~~dey~iKkq~ev---------L~Et~~mipd~~~RL~~a~~~L~~~l~ 84 (116)
T 3mxz_A 14 TSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENV---------LGESRMMIPDCHKRLESALADLKSTLA 84 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH---------HHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666555555555432222222222222 223333355555667777888999998
Q ss_pred hc--CCCCChhhHHHHHHHHHHHhh
Q 005373 412 SR--SINPDIQEMKEAEMLRQAAAS 434 (699)
Q Consensus 412 sk--~~~~d~~~~r~ae~~rqs~eS 434 (699)
.- ....+..++..|.....+++.
T Consensus 85 ~~~~~~~~~~ee~~~Ak~~l~~ae~ 109 (116)
T 3mxz_A 85 ELEETDEKEGPEIEDAKKTVADVEK 109 (116)
T ss_dssp HHHTC-CCCCHHHHHHHHHHHHHHT
T ss_pred HhcccCCCChHHHHHHHHHHHHHHH
Confidence 63 233567788888666555544
No 44
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=64.66 E-value=7.7 Score=43.28 Aligned_cols=71 Identities=17% Similarity=0.215 Sum_probs=47.1
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 242 LETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDY 321 (699)
Q Consensus 242 L~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kel 321 (699)
...-++...-+|..+-.|-.|||... ..|++ .|..|+++|..+|.--.-|-.-|...+..+.++-.+|
T Consensus 291 f~~~r~~d~~e~qqm~~~a~e~~~~~-~~e~~-----------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 358 (575)
T 2i1j_A 291 YMRRRKPDTIDVQQMKAQAREEKLAK-QAQRE-----------KLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANL 358 (575)
T ss_dssp HHHHTSCCCHHHHHHHHHHHHHHHHH-HHHHT-----------TCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCCCcHHHHHHHHHHHHHHHHH-HHHHH-----------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566667887777777776643 33333 4556888888888777777777777777777777766
Q ss_pred HHH
Q 005373 322 EKE 324 (699)
Q Consensus 322 E~E 324 (699)
++-
T Consensus 359 ~~~ 361 (575)
T 2i1j_A 359 LEA 361 (575)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 45
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=64.22 E-value=29 Score=32.69 Aligned_cols=43 Identities=37% Similarity=0.434 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHH
Q 005373 305 NELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKA 347 (699)
Q Consensus 305 ~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edka 347 (699)
.+|+.+..-+.+...+|..|+..|.-+|..+..+-.++.+.-|
T Consensus 39 ~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTa 81 (135)
T 2e7s_A 39 RELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 81 (135)
T ss_dssp HHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777778888999999999999999999988777766644
No 46
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=63.42 E-value=1.2e+02 Score=34.17 Aligned_cols=69 Identities=19% Similarity=0.249 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH------------HHHH--HHHHHHHHHHHHHHHHH
Q 005373 273 EKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRY------------MQDY--EKERKERELIEEVCDEL 338 (699)
Q Consensus 273 eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a------------~kel--E~ERKaRellE~vCdEL 338 (699)
.+...+++++|.+|+. +|..|+.-+++++.-...+ +.-| .+..-.=..++..-|++
T Consensus 345 ~~t~~~~~~~~~~~~~----------~n~~~~~~~~~~~~f~~~n~~p~~~Gh~~w~~~~~~~~~~~~dv~~~~a~~d~~ 414 (551)
T 2b5u_A 345 AKAVQVYNSRKSELDA----------ANKTLADAIAEIKQFNRFAHDPMAGGHRMWQMAGLKAQRAQTDVNNKQAAFDAA 414 (551)
T ss_dssp HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHGGGTTCTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHh----------hhhHHHHHHHhhhhhhhhccChhhccchhhhhccchhhhhhhhhhhHHHHHHHH
Confidence 5677889999999954 8888888887654321000 0112 11111234567778888
Q ss_pred HHhhhccHHHHHH
Q 005373 339 AKEIGEDKAEVEA 351 (699)
Q Consensus 339 AkeI~edkaEVe~ 351 (699)
++++.++++++-.
T Consensus 415 ~~~~s~~~~~ls~ 427 (551)
T 2b5u_A 415 AKEKSDADAALSS 427 (551)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhcccchhhhhhh
Confidence 8888888876654
No 47
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=61.08 E-value=55 Score=30.05 Aligned_cols=66 Identities=18% Similarity=0.327 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 005373 223 SMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSK 302 (699)
Q Consensus 223 Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~K 302 (699)
.+|-.|+.|++.-+..+..|..|.+.+-..+ +..|-.|..||+.=|+.++.+-.-|..
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql----------------------~~~i~~Le~eL~e~r~~~q~a~~e~e~ 72 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQRVVLQL----------------------KGHVSELEADLAEQQHLRQQAADDCEF 72 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999988877654332 233444566677666666666666666
Q ss_pred HHHHHHHH
Q 005373 303 LVNELADA 310 (699)
Q Consensus 303 L~~ELae~ 310 (699)
|-.|+.+.
T Consensus 73 Lr~e~~~l 80 (120)
T 3i00_A 73 LRAELDEL 80 (120)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666654
No 48
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=58.90 E-value=1.4e+02 Score=29.13 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHH
Q 005373 273 EKIRAFIDDLKAEISRERKNRQRIEI 298 (699)
Q Consensus 273 eki~a~i~slk~ELe~ERk~Rkr~E~ 298 (699)
+.+..-+..|+..|+.||+.|.+.+-
T Consensus 65 ~~Leke~~~LQa~L~qEr~~r~q~se 90 (168)
T 3o0z_A 65 SQTDKDYYQLQAILEAERRDRGHDSE 90 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555556555555444
No 49
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=58.86 E-value=1.4e+02 Score=29.11 Aligned_cols=40 Identities=13% Similarity=0.151 Sum_probs=28.1
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 290 RKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERE 329 (699)
Q Consensus 290 Rk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRe 329 (699)
++.||..+....|+.++|.++...+.++.+.|+.--+.-+
T Consensus 115 ~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e~e 154 (305)
T 2efl_A 115 KQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEAD 154 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777777788888888877777777777765544333
No 50
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=58.71 E-value=2e+02 Score=30.95 Aligned_cols=167 Identities=13% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HHH
Q 005373 234 QARTRIQELETERRSSKKKLEHFLRKVSEEKAA--WRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNEL-ADA 310 (699)
Q Consensus 234 ~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~a--wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~EL-ae~ 310 (699)
.....+..+.+||-....+--.-|.+|+.--.. .+.-+..-+..+.+.|..+++..=. .|..|+..| .++
T Consensus 36 ~~~~el~~f~keRa~iE~eYAk~L~kLakk~~~~~~~~~e~gtl~~aw~~~~~e~e~~a~-------~H~~~a~~L~~~v 108 (486)
T 3haj_A 36 RLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSE-------LHLEVKASLMNDD 108 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCSHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhh
Q ss_pred HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHH--------
Q 005373 311 KVSAKRYMQDY--------EKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAE-------- 374 (699)
Q Consensus 311 Kss~~~a~kel--------E~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAE-------- 374 (699)
-.-|..+.+|. .++ |.-+++--..+.+.+..-..+|+..|....+.+.|.+.=+..++-|+
T Consensus 109 ~~~l~~~~~e~~~K~~~~~~ke---rK~~~~~~~k~qk~l~~~~~~l~KaKk~Y~~~cke~e~a~~~~~~a~~d~~~t~k 185 (486)
T 3haj_A 109 FEKIKNWQKEAFHKQMMGGFKE---TKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPE 185 (486)
T ss_dssp HHHHHHHHHHHCCBCSSSSBHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCSH
T ss_pred HHHHHHHHHHHHHHhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCHH
Q ss_pred -----HhHHHhhhhhhhhhhhhhHHHhHHHHHHHHHHHHHH
Q 005373 375 -----VWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFL 410 (699)
Q Consensus 375 -----vWREERVQMKL~dAk~~leeK~s~ldkL~~eLE~FL 410 (699)
.=+-++.+.++.+|+.........++..+.+.+.-+
T Consensus 186 ~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~y~~~~ 226 (486)
T 3haj_A 186 QLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENM 226 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 51
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=57.51 E-value=1.4e+02 Score=28.76 Aligned_cols=54 Identities=20% Similarity=0.314 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhh
Q 005373 301 SKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREE 362 (699)
Q Consensus 301 ~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~reE 362 (699)
.++.+++.++...+.++.+.|+..-+.-+-+. +. +--..+++.++.+..++..+
T Consensus 125 ~~~~~~~~~~~~~l~Kak~~Y~~~c~e~e~~~-------~~-~~s~k~~eK~~~k~~ka~~~ 178 (276)
T 2v0o_A 125 LEAVQTIQSITQALQKSKENYNAKCVEQERLK-------KE-GATQREIEKAAVKSKKATDT 178 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH-CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hc-CCCHHHHHHHHHHHHHHHHH
Confidence 35566666555555555555543322211111 11 22345666666666655433
No 52
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=55.55 E-value=75 Score=26.70 Aligned_cols=27 Identities=19% Similarity=0.411 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKK 251 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~ 251 (699)
|.+|+.|++.|..++.++++......+
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l~~~e~ 34 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADKKAAEE 34 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999998888876554443
No 53
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=54.13 E-value=1.1e+02 Score=28.43 Aligned_cols=28 Identities=14% Similarity=0.159 Sum_probs=10.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 005373 284 AEISRERKNRQRIEIVNSKLVNELADAK 311 (699)
Q Consensus 284 ~ELe~ERk~Rkr~E~ln~KL~~ELae~K 311 (699)
+||-..++.-..++.....+.+|+.+.|
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK 95 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDLK 95 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444333333333333333333333333
No 54
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=52.81 E-value=2.2e+02 Score=29.77 Aligned_cols=25 Identities=20% Similarity=0.322 Sum_probs=16.0
Q ss_pred hhhccHHHHHHHHHhhHHHHhhhhh
Q 005373 341 EIGEDKAEVEALKRESMKLREEVDD 365 (699)
Q Consensus 341 eI~edkaEVe~LKres~k~reE~Ee 365 (699)
.|.|.+.||-.|.++....+.|+++
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677777776666666555544
No 55
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=52.56 E-value=3e+02 Score=31.11 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=34.4
Q ss_pred hhhhhHHHHHHHHHhHHHhhhhhhhhhhhhhHHHhHHHHHHHHHHHHHHhhc
Q 005373 362 EVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSSR 413 (699)
Q Consensus 362 E~EeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~eLE~FL~sk 413 (699)
=++-...|-||+- |--.|-|-+|--++.+|.+-...++.-.++|-.-|..|
T Consensus 382 p~~~Gh~~w~~~~-~~~~~~~~dv~~~~a~~d~~~~~~s~~~~~ls~~me~R 432 (551)
T 2b5u_A 382 PMAGGHRMWQMAG-LKAQRAQTDVNNKQAAFDAAAKEKSDADAALSSAMESR 432 (551)
T ss_dssp TTSTHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccchhhhhcc-chhhhhhhhhhhHHHHHHHHhhcccchhhhhhhhhhcc
Confidence 3567789999987 88888887776666666654444455555665555544
No 56
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=50.12 E-value=1.2e+02 Score=34.25 Aligned_cols=52 Identities=19% Similarity=0.289 Sum_probs=24.0
Q ss_pred hHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 005373 249 SKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNEL 307 (699)
Q Consensus 249 ~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~EL 307 (699)
+.++++.+++++-|+ |+.+... ..-.+....|+.+| ||++.+.|..++-.-|
T Consensus 79 nsKdseqy~k~~~E~---Lr~rq~q--~~dNdNtynE~S~E--LRRrIqyLKekVdnQl 130 (562)
T 3ghg_A 79 NNKDSHSLTTNIMEI---LRGDFSS--ANNRDNTYNRVSED--LRSRIEVLKRKVIEKV 130 (562)
T ss_dssp HHHHHHHHHHHHHHT---TSSHHHH--HHHHHHHHHHTTHH--HHHHHHHHHHHHHHHH
T ss_pred hchhHHHHHHHHHHH---HHHHHHh--hhccchhHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 555666666655554 2221111 11333333333332 5566666666665544
No 57
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=49.48 E-value=1.5e+02 Score=26.74 Aligned_cols=62 Identities=15% Similarity=0.221 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 005373 224 MVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEI 286 (699)
Q Consensus 224 lv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~EL 286 (699)
.+.+-++|+-..|..|+.|..|-.+.+.....|-..|++=.. +-..+...+.+.|..+..+|
T Consensus 30 ~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~-~~~~~l~~~q~~i~~lE~eL 91 (129)
T 3tnu_B 30 DLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQ-RGELALKDARNKLAELEEAL 91 (129)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhH
Confidence 456678888888888999998888888777777777765433 33444555556665555554
No 58
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=48.03 E-value=2.1e+02 Score=28.56 Aligned_cols=64 Identities=16% Similarity=0.214 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 005373 224 MVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEIS 287 (699)
Q Consensus 224 lv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe 287 (699)
-+..|..+|...+.++.+|...-.....+++.+.|+...|+...+.--.+++-..|-.+-+-|+
T Consensus 60 e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnle 123 (213)
T 4ani_A 60 ELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFE 123 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4567888888888888888888888888999999999888887777666666666666666554
No 59
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=47.86 E-value=3.4e+02 Score=30.49 Aligned_cols=104 Identities=14% Similarity=0.136 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHH----hhHHHHhhhhhhHHHH-
Q 005373 303 LVNELADAKVSAKR-------YMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKR----ESMKLREEVDDERKML- 370 (699)
Q Consensus 303 L~~ELae~Kss~~~-------a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKr----es~k~reE~EeER~ML- 370 (699)
.-++...+..++.+ .-|+++.|+..++.+|.-...|..-..+.++-++.-++ ....+.+.+|+||+.+
T Consensus 464 fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~~~~~ 543 (592)
T 1f5n_A 464 YLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLL 543 (592)
T ss_dssp HHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555532 45678888988999988888887776666555554322 2223345566666633
Q ss_pred HHHHHhHHHhhhhhhhhhhhhhHHHhHHHHHHHHHHHHH
Q 005373 371 QMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAF 409 (699)
Q Consensus 371 qmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~eLE~F 409 (699)
+=-+.-.+.++|.+-.-.+.+|.+|... |+.||+.+
T Consensus 544 ~e~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~ei~~l 579 (592)
T 1f5n_A 544 KEQERTLALKLQEQEQLLKEGFQKESRI---MKNEIQDL 579 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 3333444455544333344445555544 44444443
No 60
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=47.55 E-value=2.5e+02 Score=31.75 Aligned_cols=51 Identities=12% Similarity=0.122 Sum_probs=35.8
Q ss_pred hhhhHHHHHHHHHhH---HHhhhhhhhhhhhhhHHHh-HHHHHHHHHHHHHHhhc
Q 005373 363 VDDERKMLQMAEVWR---EERVQMKLVDAKVAVEQKY-SQMNKLVAELEAFLSSR 413 (699)
Q Consensus 363 ~EeER~MLqmAEvWR---EERVQMKL~dAk~~leeK~-s~ldkL~~eLE~FL~sk 413 (699)
-+-++..-||+.-.. ..||.--+...+..+++|. ..++..+.+|+.-+.-+
T Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~ 653 (695)
T 2j69_A 599 KELVKHLPQVAHEQSQVVYNAVKECFDSYEREVSKRINDDIVSRKSELDNLVKQK 653 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355788888884444 5677777777777777764 45677888888877775
No 61
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=47.51 E-value=36 Score=36.63 Aligned_cols=32 Identities=34% Similarity=0.342 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 005373 226 AALEAEVEQARTRIQELETERRSSKKKLEHFL 257 (699)
Q Consensus 226 ~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~ 257 (699)
..|+.||...+.++++|+++.+..+.+++.+-
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~ 37 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCK 37 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888888876655555444443
No 62
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=47.44 E-value=2.7e+02 Score=29.23 Aligned_cols=145 Identities=12% Similarity=0.126 Sum_probs=69.5
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhh
Q 005373 287 SRERKNRQRIEIVNSKLVNELADAK-VSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDD 365 (699)
Q Consensus 287 e~ERk~Rkr~E~ln~KL~~ELae~K-ss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~reE~Ee 365 (699)
.+=++.||..+....||.+++..+- ..+.++.+.|+.--+.-+....-..+.+++ .+++.++.+..+...++..
T Consensus 108 ke~~~~rK~~~~~~~klqk~~~k~~~~~lekaKk~Y~~~cke~e~A~~k~~~~~k~-----ke~eK~~~k~~k~~~~~~~ 182 (406)
T 4dyl_A 108 RERQQLRKTYSEQWQQLQQELTKTHSQDIEKLKSQYRALARDSAQAKRKYQEASKD-----KDRDKAKDKYVRSLWKLFA 182 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCC--------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC-----chHHHHHHHHHHHHHHHHH
Confidence 3335678888888888888887766 566666666655433333222222222221 4455555555544443322
Q ss_pred h----HHHHHHHHHhHHHhhhhhhhh---hhhhhHHHhHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHhhcccc
Q 005373 366 E----RKMLQMAEVWREERVQMKLVD---AKVAVEQKYSQMNKLVAELEAFLSSRSINPDIQEMKEAEMLRQAAASVNIQ 438 (699)
Q Consensus 366 E----R~MLqmAEvWREERVQMKL~d---Ak~~leeK~s~ldkL~~eLE~FL~sk~~~~d~~~~r~ae~~rqs~eSv~~~ 438 (699)
- ...|+.+..|....-+--+-+ .=-.|++. -+..|..=|-.|...-... ......--+.+++++++++..
T Consensus 183 a~neY~~~l~~~N~~~~~yy~~~lp~~~d~lQ~lEe~--Ri~~lk~~L~~~~~~~~~~-~~~~~~~~~~l~~~i~~id~~ 259 (406)
T 4dyl_A 183 HHNRYVLGVRAAQLHHQHHHQLLLPGLLRSLQDLHEE--MACILKEILQEYLEISSLV-QDEVVAIHREMAAAAARIQPE 259 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCSS-SHHHHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHcCcH
Confidence 1 234455555555433322222 21234433 2334555555555543322 222223336788999998664
Q ss_pred c
Q 005373 439 E 439 (699)
Q Consensus 439 ~ 439 (699)
.
T Consensus 260 ~ 260 (406)
T 4dyl_A 260 A 260 (406)
T ss_dssp G
T ss_pred H
Confidence 3
No 63
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=46.70 E-value=2.6e+02 Score=28.72 Aligned_cols=75 Identities=17% Similarity=0.237 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccH----HHHHHHHHhhHHHHhhhhhhHHHHHHHHHhHHHhhhhhhhhhhhhhHHHh
Q 005373 321 YEKERKERELIEEVCDELAKEIGEDK----AEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKY 396 (699)
Q Consensus 321 lE~ERKaRellE~vCdELAkeI~edk----aEVe~LKres~k~reE~EeER~MLqmAEvWREERVQMKL~dAk~~leeK~ 396 (699)
-|+||+-|++-...-++|..+|+-.. -+.+.|+.......++++.|+-+|| +++-..+++|.
T Consensus 162 ~e~Er~~rEin~s~ike~veerkrl~~kQ~k~qEkL~~~h~e~le~l~~e~~k~~--------------~~~~~~~q~~~ 227 (251)
T 1jad_A 162 AAQERLKKEINNSHIQEVVQTIKLLTEKTARYQQKLEEKQAENLRAIQEKEGQLQ--------------QEAVAEYEEKL 227 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH--------------HHHHHHHHHHH
Confidence 45566666666666666666654332 2345555555555566655555554 22333345543
Q ss_pred HHHHHHHHHHHHHHhh
Q 005373 397 SQMNKLVAELEAFLSS 412 (699)
Q Consensus 397 s~ldkL~~eLE~FL~s 412 (699)
..|-+||..|++.
T Consensus 228 ---~~l~~ei~e~~~~ 240 (251)
T 1jad_A 228 ---KTLTVEVQEMVKN 240 (251)
T ss_dssp ---HHHHHHHHHHHHH
T ss_pred ---hcChHHHHHHHHH
Confidence 4455577777654
No 64
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=44.91 E-value=2.3e+02 Score=27.59 Aligned_cols=40 Identities=10% Similarity=0.167 Sum_probs=30.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 288 RERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKE 327 (699)
Q Consensus 288 ~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKa 327 (699)
+=++.||+.+....|+.++|.++-..+.++.+.|+.--+.
T Consensus 106 ~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e 145 (301)
T 2efk_A 106 EMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCRE 145 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356778888888899999888888888877777765443
No 65
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=44.35 E-value=1.5e+02 Score=26.55 Aligned_cols=87 Identities=23% Similarity=0.299 Sum_probs=49.0
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhh-hhHHHHHHHHHhHHHhhhhhhhhhhhhhHHHhHHHHHHHHHHHHHH
Q 005373 332 EEVCDELAKEIGEDKAEVEALKRESMKLREEVD-DERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFL 410 (699)
Q Consensus 332 E~vCdELAkeI~edkaEVe~LKres~k~reE~E-eER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~eLE~FL 410 (699)
-.+|..|+|+..-|+.|+........++..+-. .+ -+|.-.+.- |.|.+--|.+=..-|.....+|+.||
T Consensus 10 tg~vkRL~KE~~~Y~kE~~~q~~riek~k~~~~~de-y~iKkq~ev--------l~Et~~mipd~~~Rl~~a~~~L~~~l 80 (106)
T 1qsd_A 10 VKALKRLTKEEGYYQQELKDQEAHVAKLKEDKSVDP-YDLKKQEEV--------LDDTKRLLPTLYEKIREFKEDLEQFL 80 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCH-HHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHH--------HHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777777776666655432 22 233333222 22333335555556677778888899
Q ss_pred hhcCCCCChhhHHHHHHHHH
Q 005373 411 SSRSINPDIQEMKEAEMLRQ 430 (699)
Q Consensus 411 ~sk~~~~d~~~~r~ae~~rq 430 (699)
..-. +..++.+|..+.+
T Consensus 81 ~~~~---~~ee~~~Ake~l~ 97 (106)
T 1qsd_A 81 KTYQ---GTEDVSDARSAIT 97 (106)
T ss_dssp HTCC---SSSCCHHHHHHHH
T ss_pred Hhcc---CcHHHHHHHHHHH
Confidence 4321 2345566644433
No 66
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=41.17 E-value=91 Score=27.88 Aligned_cols=40 Identities=33% Similarity=0.444 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHH
Q 005373 313 SAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKL 359 (699)
Q Consensus 313 s~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~ 359 (699)
-+.=|-.|.+.||.+|+-| +.++.++...++.|.++..++
T Consensus 48 Qv~IY~~DF~aERadREkl-------~~eKe~L~~ql~~lq~q~~~L 87 (94)
T 3jsv_C 48 QADIYKADFQAERHAREKL-------VEKKEYLQEQLEQLQREFNKL 87 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHTTSHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHH
Confidence 3444678899999999854 556666666677776665444
No 67
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=41.07 E-value=1.8e+02 Score=26.96 Aligned_cols=9 Identities=44% Similarity=0.516 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 005373 303 LVNELADAK 311 (699)
Q Consensus 303 L~~ELae~K 311 (699)
|-.||..++
T Consensus 94 lK~el~~~~ 102 (138)
T 3hnw_A 94 LKHELIAAQ 102 (138)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333444443
No 68
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=40.77 E-value=1.5e+02 Score=32.87 Aligned_cols=39 Identities=5% Similarity=0.128 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 005373 222 VSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKV 260 (699)
Q Consensus 222 ~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~Kql 260 (699)
.-+|.+|+..|...+.+|.+++.--+.+..+|+...+.+
T Consensus 120 ~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i 158 (464)
T 1m1j_B 120 YQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYI 158 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHH
Confidence 346677777777777777776665555555555444444
No 69
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=40.08 E-value=68 Score=34.27 Aligned_cols=26 Identities=19% Similarity=0.449 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhH
Q 005373 225 VAALEAEVEQARTRIQELETERRSSK 250 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k 250 (699)
|.+|+.||...+.++.+|+++....+
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~ 30 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTE 30 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555433333
No 70
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=39.64 E-value=2.4e+02 Score=26.26 Aligned_cols=67 Identities=22% Similarity=0.380 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 005373 226 AALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVN 305 (699)
Q Consensus 226 ~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ 305 (699)
.-|+.+|-+|+.-.++-+++--+-.+.+..|+.-|.+||+.- + .-|+.+++| ++.||.+|-+
T Consensus 28 ~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~----q----~~vqeLqgE----------I~~Lnq~Lq~ 89 (121)
T 3mq7_A 28 HLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG----Q----KKVEELEGE----------ITTLNHKLQD 89 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H----HHHHHHHHH----------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H----HHHHHHHHH----------HHHHHHHHHH
Confidence 568889999998888888887888889999999998888743 1 124444444 3457777755
Q ss_pred HHHHH
Q 005373 306 ELADA 310 (699)
Q Consensus 306 ELae~ 310 (699)
-++++
T Consensus 90 a~ae~ 94 (121)
T 3mq7_A 90 ASAEV 94 (121)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 71
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=38.30 E-value=2.5e+02 Score=30.50 Aligned_cols=19 Identities=21% Similarity=0.280 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005373 303 LVNELADAKVSAKRYMQDY 321 (699)
Q Consensus 303 L~~ELae~Kss~~~a~kel 321 (699)
|...+.+++..+..++.-+
T Consensus 347 L~~~~~~~~~~~~~l~~yF 365 (483)
T 2j1d_G 347 VEDLLAEAKDLFTKAVKHF 365 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4444555566666655544
No 72
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=37.46 E-value=2.3e+02 Score=31.81 Aligned_cols=58 Identities=14% Similarity=0.243 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHH
Q 005373 276 RAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAE 348 (699)
Q Consensus 276 ~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaE 348 (699)
..-|.-|+++++.||+. -++..++-|..-|.| .++--++-.++-.+.|-.+|.+.+..
T Consensus 525 ~e~~~ql~~kme~~~~~--~~~e~~~~~~~~~~~-------------~~~~~~~g~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 525 QEHLKQLTEKMENDRVQ--LLKEQERTLALKLQE-------------QEQLLKEGFQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-------------HHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455667778888763 334445555444433 23333444555566677777766654
No 73
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=36.84 E-value=3e+02 Score=26.72 Aligned_cols=54 Identities=24% Similarity=0.257 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHH
Q 005373 299 VNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKL 359 (699)
Q Consensus 299 ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~ 359 (699)
.--.|-+|++.+. -.|+.||+.|-..+++-.||=..|.....|++.+|..-.++
T Consensus 63 ~k~~Leke~~~LQ-------a~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~ 116 (168)
T 3o0z_A 63 SKSQTDKDYYQLQ-------AILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKV 116 (168)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445554443 45788999999999999999999999999999988765554
No 74
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=36.83 E-value=3.4e+02 Score=27.30 Aligned_cols=88 Identities=14% Similarity=0.254 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHH
Q 005373 279 IDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMK 358 (699)
Q Consensus 279 i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k 358 (699)
|..|...++...|- +....++...|.-.--.++.++..+|.+-+|... .. ..+.-..|.....|++.+-+++-+
T Consensus 103 I~pLE~k~e~D~k~---i~~~~K~y~~e~k~~~~~leK~~~elkK~~rksq--k~-~~k~~e~v~~~q~el~~f~~~s~r 176 (222)
T 3ok8_A 103 LQHMEKNTKLDMQF---IKDSCQHYEIEYRHRAANLEKCMSELWRMERKRD--KN-AREMKESVNRLHAQMQAFVSESKR 176 (222)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--TT-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhc--cC-hHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34444444433332 4455666777776666677777777776644332 11 122233455566677777666654
Q ss_pred HHhhhhhhHHHHHHH
Q 005373 359 LREEVDDERKMLQMA 373 (699)
Q Consensus 359 ~reE~EeER~MLqmA 373 (699)
. ..+||.|+--=++
T Consensus 177 ~-Al~EErRRYcFL~ 190 (222)
T 3ok8_A 177 A-AELEEKRRYRFLA 190 (222)
T ss_dssp H-HHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHH
Confidence 3 3345555543333
No 75
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=36.30 E-value=2e+02 Score=24.57 Aligned_cols=65 Identities=20% Similarity=0.252 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHH
Q 005373 274 KIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEAL 352 (699)
Q Consensus 274 ki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~L 352 (699)
....-+..+++.|+.+-+.|+.+|.-+.+|..|-.+.... -.=+|+.|+.|...-.+.+..|..|
T Consensus 18 ~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q--------------l~eaEe~~~~L~~~K~eLE~~l~el 82 (89)
T 3bas_A 18 EQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS--------------MKQLEDKVEELLSKNYHLENEVARL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445577788999999999999999999998888765544 2335677888877766666666665
No 76
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=36.01 E-value=3.2e+02 Score=26.72 Aligned_cols=15 Identities=7% Similarity=0.047 Sum_probs=9.5
Q ss_pred HHHHHHHHHHhhccc
Q 005373 423 KEAEMLRQAAASVNI 437 (699)
Q Consensus 423 r~ae~~rqs~eSv~~ 437 (699)
...+.+++++++++.
T Consensus 250 ~~~~~~~~~i~~id~ 264 (290)
T 3i2w_A 250 QIYEEFSHTINNADQ 264 (290)
T ss_dssp HHHHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHhcCh
Confidence 345667777777744
No 77
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=35.27 E-value=48 Score=28.23 Aligned_cols=42 Identities=26% Similarity=0.408 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHH
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAA 266 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~a 266 (699)
|--+..||+.+++.|+.|++|--..+-.+=+|---||-||.+
T Consensus 28 vgdiEqeLe~Ck~sIrrLE~evn~ErFrmIYLQTlLAkerks 69 (72)
T 1k1f_A 28 VGDIEQELERAKASIRRLEQEVNQERFRMIYLQTLLAKEKKS 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 567889999999999999998877777777777666666543
No 78
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=34.81 E-value=3.6e+02 Score=26.96 Aligned_cols=59 Identities=15% Similarity=0.111 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHH-HHHHHHHH---HH---------HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 269 SREHEKIRAFID-DLKAEISR---ER---------KNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKE 327 (699)
Q Consensus 269 skE~eki~a~i~-slk~ELe~---ER---------k~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERKa 327 (699)
++.|..+...|. .|-..|.. |- |.+|.++..-.|+.++|.++...+.++.+.|+..-+.
T Consensus 92 a~~H~~~a~~L~~~v~~~l~~~~~e~~~k~~~~~~ke~K~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~c~e 163 (337)
T 2x3v_A 92 SELHQEVKNSLLNEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKE 163 (337)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHCCBCSSCSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555553 24444442 21 2335566666677777777666666666666654433
No 79
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=34.47 E-value=68 Score=29.17 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 005373 223 SMVAALEAEVEQARTRIQELETERRSSKKKLEHF 256 (699)
Q Consensus 223 Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l 256 (699)
+-+.||..||..++.+|.+|.++-...+-.++.|
T Consensus 4 ~s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~l 37 (106)
T 4e61_A 4 GSLVAIQAELTKSQETIGSLNEEIEQYKGTVSTL 37 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999888776666555554
No 80
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=32.96 E-value=5.1e+02 Score=28.23 Aligned_cols=28 Identities=14% Similarity=0.226 Sum_probs=15.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhHHHHH
Q 005373 238 RIQELETERRSSKKKLEHFLRKVSEEKA 265 (699)
Q Consensus 238 rI~eL~~E~~s~k~eie~l~KqlaEEK~ 265 (699)
.|.++.++++...++.|..+-++++|-.
T Consensus 92 ~~~~~lk~~~~q~~dndn~~~e~s~eLe 119 (390)
T 1deq_A 92 NIVELMRGDFAKANNNDNTFKQINEDLR 119 (390)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 3444555555555555555666666544
No 81
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=32.34 E-value=1.7e+02 Score=26.62 Aligned_cols=34 Identities=26% Similarity=0.447 Sum_probs=24.0
Q ss_pred HHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHHHHHhHH
Q 005373 335 CDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWRE 378 (699)
Q Consensus 335 CdELAkeI~edkaEVe~LKres~k~reE~EeER~MLqmAEvWRE 378 (699)
..++-..|.+..+||+.|+.+-..+ +|=.+.||-
T Consensus 60 ~~~~~~~v~eLe~everL~~ENq~L----------~~e~~~~~~ 93 (104)
T 3s9g_A 60 SKRLDARVRELELELDRLRAENLQL----------LTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH
T ss_pred hccchhhHHHHHHHHHHHHHHHHHH----------HHHHHhhcc
Confidence 3445678889999999998876654 444566764
No 82
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=30.94 E-value=3e+02 Score=24.84 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 005373 230 AEVEQARTRIQELETERRSSKKKLEHF 256 (699)
Q Consensus 230 ~EL~~Ar~rI~eL~~E~~s~k~eie~l 256 (699)
.+|..++..|.+|...-++..-+|+.+
T Consensus 31 ~~l~~~k~Ei~elrr~iq~L~~el~~l 57 (131)
T 3tnu_A 31 ELVQSGKSEISELRRTMQNLEIELQSQ 57 (131)
T ss_dssp ----------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555444444444444
No 83
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=30.91 E-value=4.8e+02 Score=27.23 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHH
Q 005373 331 IEEVCDELAKEIGEDKAEVEALKR 354 (699)
Q Consensus 331 lE~vCdELAkeI~edkaEVe~LKr 354 (699)
+|.-..+|-.+|.+.+|||+++|+
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~ 471 (471)
T 3mq9_A 448 LEGEITTLNHKLQDASAEVERLRR 471 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344445566677777777777763
No 84
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=29.28 E-value=3.9e+02 Score=25.67 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=13.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005373 292 NRQRIEIVNSKLVNELADAKVSAKRY 317 (699)
Q Consensus 292 ~Rkr~E~ln~KL~~ELae~Kss~~~a 317 (699)
+-+.++.+..+|.++|.+++.-+.-+
T Consensus 93 l~~~~e~lr~~l~kdlEelr~kL~P~ 118 (191)
T 1nfn_A 93 LSKELQAAQARLGADMEDVCGRLVQY 118 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 44455555566666666555433333
No 85
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=29.21 E-value=65 Score=25.67 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=27.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 005373 221 AVSMVAALEAEVEQARTRIQELETERRSSKKKL 253 (699)
Q Consensus 221 ~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~ei 253 (699)
+.+=|-+|+.|++..|.+|.+|.++....+.++
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456689999999999999999999877666554
No 86
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=29.02 E-value=4.5e+02 Score=26.27 Aligned_cols=15 Identities=27% Similarity=0.158 Sum_probs=10.1
Q ss_pred HHHHHHHHHhhcccc
Q 005373 424 EAEMLRQAAASVNIQ 438 (699)
Q Consensus 424 ~ae~~rqs~eSv~~~ 438 (699)
..+.++++++.++..
T Consensus 264 ~~~~l~~~i~~id~~ 278 (337)
T 2x3v_A 264 VYRELEQAIRGADAQ 278 (337)
T ss_dssp HHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHcChH
Confidence 446678888887543
No 87
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=28.51 E-value=3.5e+02 Score=29.84 Aligned_cols=14 Identities=21% Similarity=0.287 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHhh
Q 005373 329 ELIEEVCDELAKEI 342 (699)
Q Consensus 329 ellE~vCdELAkeI 342 (699)
+.+++.|+++-.-+
T Consensus 563 ~~~~~~~~~~~~~l 576 (605)
T 4b9q_A 563 TAIESALTALETAL 576 (605)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555544433
No 88
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=28.31 E-value=6.9e+02 Score=28.20 Aligned_cols=22 Identities=18% Similarity=0.151 Sum_probs=12.6
Q ss_pred HHHHHHHhhcC-CCCChhhHHHH
Q 005373 404 AELEAFLSSRS-INPDIQEMKEA 425 (699)
Q Consensus 404 ~eLE~FL~sk~-~~~d~~~~r~a 425 (699)
.=||++|..+. ...|....+-+
T Consensus 281 ~~iet~L~~~~~~i~D~~L~~~v 303 (526)
T 3iyk_A 281 SVVSTILEYRAKEIPDNALAVSV 303 (526)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHH
Confidence 45889998753 34454444333
No 89
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=28.05 E-value=3.3e+02 Score=24.50 Aligned_cols=82 Identities=20% Similarity=0.237 Sum_probs=51.2
Q ss_pred HHHhhhhcc---cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHH
Q 005373 205 VRQIYSHMK---HLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDD 281 (699)
Q Consensus 205 llkvlnri~---leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~s 281 (699)
+--+.|||. .--.+.++-+-|..|=.-|---+.++=..+++....+-..+.|-.+|+-=+. .++||+.
T Consensus 13 v~if~NRmksn~~RGrsi~nDssVQsLF~~lt~MH~~Ll~~i~~~ee~R~~yE~LQDkL~qi~e---------AR~ALda 83 (98)
T 3f1i_H 13 VTTFVNRMKSNHMRGRSITNDSAVLSLFQSINGMHPQLLELLNQLDERRLYYEGLQDKLAQIRD---------ARGALSA 83 (98)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHH
Confidence 445567776 2234456667788887777766666666666555555555555554443322 5788999
Q ss_pred HHHHHHHHHHhhhhHH
Q 005373 282 LKAEISRERKNRQRIE 297 (699)
Q Consensus 282 lk~ELe~ERk~Rkr~E 297 (699)
|++|= ..|+|+.+|
T Consensus 84 LR~eH--~~Klrr~ae 97 (98)
T 3f1i_H 84 LREEH--REKLRRAAE 97 (98)
T ss_dssp HHHHH--HHHHHHHHC
T ss_pred HHHHH--HHHHHHHhc
Confidence 98875 667777665
No 90
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=27.61 E-value=4.3e+02 Score=25.65 Aligned_cols=50 Identities=12% Similarity=0.230 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----------hh-ccHHHHHHHHHhhHHHHhhhhhhH
Q 005373 317 YMQDYEKERKERELIEEVCDELAKE----------IG-EDKAEVEALKRESMKLREEVDDER 367 (699)
Q Consensus 317 a~kelE~ERKaRellE~vCdELAke----------I~-edkaEVe~LKres~k~reE~EeER 367 (699)
.+.++. .|+.-++|+.++.=+--. +. +.+.-+..|..+..+++.+.++++
T Consensus 184 ~l~~l~-~kk~~e~le~l~~~~~a~~~ff~~g~e~~~~~~~p~~~~l~~~l~~~r~~~~~~~ 244 (265)
T 2q12_A 184 ALNTLQ-YKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIGTSVQNVRREMDSDI 244 (265)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 477778888886532221 11 334444555555555555554433
No 91
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=27.45 E-value=1.2e+02 Score=25.28 Aligned_cols=26 Identities=19% Similarity=0.443 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Q 005373 283 KAEISRERKNRQRIEIVNSKLVNELA 308 (699)
Q Consensus 283 k~ELe~ERk~Rkr~E~ln~KL~~ELa 308 (699)
+.=|+.|.++|+++|.+=+|+.+...
T Consensus 27 k~~le~eqraRk~LE~~vrk~~k~~n 52 (61)
T 3l4f_A 27 KKSLEEEQRARKDLEKLVRKVLKNMN 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33488999999999999999977654
No 92
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=27.15 E-value=3.2e+02 Score=23.90 Aligned_cols=50 Identities=10% Similarity=0.108 Sum_probs=34.0
Q ss_pred cHHHHHHHHHhhHHHHhhhhhhHHHHHHHHHhHHHhhhhhhhhhhhhhHHHhHHHHHHHHHHHHH
Q 005373 345 DKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAF 409 (699)
Q Consensus 345 dkaEVe~LKres~k~reE~EeER~MLqmAEvWREERVQMKL~dAk~~leeK~s~ldkL~~eLE~F 409 (699)
.+.||..|.++..-+-.|+ +++|-+|.+|+..|++.-.......+++.++
T Consensus 42 ~E~Ei~sL~kk~~~lE~el---------------d~~ee~L~ea~~kLee~ek~~~~aE~ev~~L 91 (101)
T 3u1c_A 42 LEDDIVQLEKQLRVTEDSR---------------DQVLEELHKSEDSLLFAEENAAKAESEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777666555555 3467788888888888766666666666654
No 93
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=26.81 E-value=2.6e+02 Score=25.04 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhhH
Q 005373 232 VEQARTRIQELETERRSSKKKLEHFLRKVS 261 (699)
Q Consensus 232 L~~Ar~rI~eL~~E~~s~k~eie~l~Kqla 261 (699)
|--.-.-|+.|.+|..+|++|++..-.++.
T Consensus 9 LkIkt~~vkRL~KE~~~Y~kE~~~q~~rie 38 (108)
T 1h7c_A 9 IKIKTGVVRRLVKERVMYEKEAKQQEEKIE 38 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555677788888888887766555443
No 94
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=26.51 E-value=2.4e+02 Score=24.59 Aligned_cols=51 Identities=22% Similarity=0.473 Sum_probs=35.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHhhHHHHHHhhhh
Q 005373 220 SAVSMVAALEAEVEQARTRIQELETERRSSK---KKLEHFLRKVSEEKAAWRSR 270 (699)
Q Consensus 220 s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k---~eie~l~KqlaEEK~awKsk 270 (699)
..|--|.-|++|++.-+..-..|.++.+..+ ..++.=..++.+|..+|..+
T Consensus 17 ~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~R 70 (81)
T 2jee_A 17 QAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQER 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4455677788888777777777776665533 34555567888999999653
No 95
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=26.21 E-value=3.6e+02 Score=24.21 Aligned_cols=27 Identities=7% Similarity=0.311 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 005373 230 AEVEQARTRIQELETERRSSKKKLEHF 256 (699)
Q Consensus 230 ~EL~~Ar~rI~eL~~E~~s~k~eie~l 256 (699)
.+|..++..|.+|...-++..-+|+.+
T Consensus 29 ~~l~~~k~Ei~elrr~iq~L~~el~~l 55 (129)
T 3tnu_B 29 DDLRNTKHEISEMNRMIQRLRAEIDNV 55 (129)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554444444444444
No 96
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=25.95 E-value=4.4e+02 Score=25.19 Aligned_cols=13 Identities=15% Similarity=0.054 Sum_probs=8.5
Q ss_pred HHHHHHHHHhhcc
Q 005373 424 EAEMLRQAAASVN 436 (699)
Q Consensus 424 ~ae~~rqs~eSv~ 436 (699)
..+.++++++.++
T Consensus 236 ~~~~~~~~~~~id 248 (276)
T 2v0o_A 236 VHEEFINNMANTT 248 (276)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCC
Confidence 3456777777774
No 97
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=25.80 E-value=2.6e+02 Score=23.76 Aligned_cols=37 Identities=22% Similarity=0.327 Sum_probs=21.6
Q ss_pred HHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 005373 257 LRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRI 296 (699)
Q Consensus 257 ~KqlaEEK~awKskE~eki~a~i~slk~ELe~ERk~Rkr~ 296 (699)
+|.+.+|...-+ .+.+......+...|..||-+..++
T Consensus 22 lk~~~ee~~~~~---eee~~~~~~~lek~L~~E~~LK~QA 58 (71)
T 1s1c_X 22 MKKAEEEYKLEK---EEEISNLKAAFEKNINTERTLKTQA 58 (71)
T ss_dssp HHHHHHHHHHHH---HHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444333 3334455667777888888777653
No 98
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=25.44 E-value=5.4e+02 Score=26.00 Aligned_cols=23 Identities=9% Similarity=0.088 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHhhcc-cccccc
Q 005373 420 QEMKEAEMLRQAAASVN-IQEIKE 442 (699)
Q Consensus 420 ~~~r~ae~~rqs~eSv~-~~~ike 442 (699)
..-...+.++++++.++ -.||..
T Consensus 269 ~~~~~~~~l~~~i~~id~~~Di~~ 292 (350)
T 3aco_A 269 GYKAIYHDLEQSIRAADAVEDLRW 292 (350)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34445567889999884 344433
No 99
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=25.14 E-value=6.9e+02 Score=27.20 Aligned_cols=11 Identities=27% Similarity=0.664 Sum_probs=5.9
Q ss_pred cccCCCCCCCh
Q 005373 192 TKWNPVCLKTP 202 (699)
Q Consensus 192 tkw~~~~lkts 202 (699)
..|..-|-.-.
T Consensus 42 eDwG~kCPsGC 52 (390)
T 1deq_A 42 EDWNTKCPSGC 52 (390)
T ss_pred hhccCCCCccc
Confidence 44666665443
No 100
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=24.99 E-value=3.6e+02 Score=26.97 Aligned_cols=31 Identities=6% Similarity=0.097 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 005373 225 VAALEAEVEQARTRIQELETERRSSKKKLEH 255 (699)
Q Consensus 225 v~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~ 255 (699)
+..++++|..+++++....++....+.+++.
T Consensus 72 l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r 102 (369)
T 4dk0_A 72 LNTRKAALASYQAQLVARKTAYDVALSNYQR 102 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666555555544444444444
No 101
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=24.73 E-value=4e+02 Score=24.32 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q 005373 325 RKERELIEEVCDELAKE 341 (699)
Q Consensus 325 RKaRellE~vCdELAke 341 (699)
|+.+.-.=..|+.|-.+
T Consensus 60 r~~~q~a~~e~e~Lr~e 76 (120)
T 3i00_A 60 QHLRQQAADDCEFLRAE 76 (120)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333334444433
No 102
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=23.96 E-value=61 Score=24.13 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHH
Q 005373 331 IEEVCDELAKEIGEDKAEVEALKR 354 (699)
Q Consensus 331 lE~vCdELAkeI~edkaEVe~LKr 354 (699)
||+=++||-.+-.+.++||..||.
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 677788888888888888888863
No 103
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=23.43 E-value=3.5e+02 Score=23.08 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhH
Q 005373 275 IRAFIDDLKAEISRERKNRQRI 296 (699)
Q Consensus 275 i~a~i~slk~ELe~ERk~Rkr~ 296 (699)
|......+...|..||-+..++
T Consensus 37 ~~~~k~~lek~L~~E~~LK~QA 58 (71)
T 1uix_A 37 AAAIKAQFEKQLLTERTLKTQA 58 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3366667788888898777653
No 104
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=23.34 E-value=5.4e+02 Score=25.30 Aligned_cols=25 Identities=16% Similarity=0.217 Sum_probs=12.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Q 005373 292 NRQRIEIVNSKLVNELADAKVSAKR 316 (699)
Q Consensus 292 ~Rkr~E~ln~KL~~ELae~Kss~~~ 316 (699)
--+.+..-|.+|..|+-..|.-+..
T Consensus 57 ~~~~L~~~~~~L~~E~e~~k~K~~~ 81 (189)
T 2v71_A 57 RNRDLQADNQRLKYEVEALKEKLEH 81 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555565555543333
No 105
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=23.17 E-value=45 Score=31.31 Aligned_cols=59 Identities=19% Similarity=0.205 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhHHHHHH
Q 005373 302 KLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQM 372 (699)
Q Consensus 302 KL~~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~reE~EeER~MLqm 372 (699)
-|..||-|+.+-+..| -+-+..+|+=|--+-+.....+.|++++|++.. +.-|+..||+
T Consensus 6 SL~~ELqEsqskL~~A-------e~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~-----~~~d~L~lQ~ 64 (130)
T 3cl3_D 6 GSLGELQESQSRLEAA-------TKECQALEGRARAASEQARQLESEREALQQQHS-----VQVDQLRMQG 64 (130)
T ss_dssp ----------------------------------------------------CTTT-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 4677888888777776 344567899999999999999999999988754 3445555554
No 106
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=22.73 E-value=3.6e+02 Score=23.02 Aligned_cols=42 Identities=14% Similarity=0.167 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccH
Q 005373 305 NELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDK 346 (699)
Q Consensus 305 ~ELae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edk 346 (699)
.||...+.-+.++...|+++.+.|.=||.-+..|-.+..+..
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~ 55 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLF 55 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555556666777777777777777666666655543
No 107
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=22.59 E-value=6.4e+02 Score=25.86 Aligned_cols=108 Identities=18% Similarity=0.178 Sum_probs=66.7
Q ss_pred HHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHHHhhh---ccHHHHHHHHHhh-H
Q 005373 285 EISRERKN-RQRIEIVNSKLVNELADAKVSAKRYMQ-DYEKERKE-RELIEEVCDELAKEIG---EDKAEVEALKRES-M 357 (699)
Q Consensus 285 ELe~ERk~-Rkr~E~ln~KL~~ELae~Kss~~~a~k-elE~ERKa-RellE~vCdELAkeI~---edkaEVe~LKres-~ 357 (699)
..+.|+++ +.|+...+.+|..=+-++..+-.+.|+ -.|+|.|. +..+...-.|-++++. -+++|-++.++|. .
T Consensus 94 q~~eE~~~k~~Hl~eq~~~Lk~l~~e~Q~~QmK~Lk~~~ErE~KELkk~q~kks~e~i~e~~~ktK~K~e~Er~~rEin~ 173 (251)
T 1jad_A 94 YHDGIRRRKEQHATEQTAKITELAREKQIAELKALKESSESNIKDIKKKLEAKRLDRIQVMMRSTSDKAAQERLKKEINN 173 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 34455544 567888888886666666555555555 33555421 1122222233333333 7888778887773 3
Q ss_pred HHHhhhhhhHHHHHHHHHhHHHhhhhhhhhhhhhh
Q 005373 358 KLREEVDDERKMLQMAEVWREERVQMKLVDAKVAV 392 (699)
Q Consensus 358 k~reE~EeER~MLqmAEvWREERVQMKL~dAk~~l 392 (699)
+.-.|+=++|+-|.|+-.|+.|++.-+-.+---.|
T Consensus 174 s~ike~veerkrl~~kQ~k~qEkL~~~h~e~le~l 208 (251)
T 1jad_A 174 SHIQEVVQTIKLLTEKTARYQQKLEEKQAENLRAI 208 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577889999999999999998876555544444
No 108
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=22.32 E-value=69 Score=23.99 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHH
Q 005373 331 IEEVCDELAKEIGEDKAEVEALKR 354 (699)
Q Consensus 331 lE~vCdELAkeI~edkaEVe~LKr 354 (699)
||+=|.||-.+-.+.++||+.||.
T Consensus 6 LE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 6 LEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 677788888888888888888863
No 109
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=22.09 E-value=1.3e+02 Score=31.07 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhh
Q 005373 328 RELIEEVCDELAKEIGEDKAEVEALKRESMKLREEV 363 (699)
Q Consensus 328 RellE~vCdELAkeI~edkaEVe~LKres~k~reE~ 363 (699)
-++.++++..|++......+|++.|..+...+.+|+
T Consensus 166 ~~~~~e~~~~~~~~~n~~~~eie~L~~~~~~L~eEi 201 (315)
T 2ve7_A 166 DEMNAELQSKLKDLFNVDAFKLESLEAKNRALNEQI 201 (315)
T ss_dssp HHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777777777777778888877777666665
No 110
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=21.64 E-value=56 Score=29.39 Aligned_cols=74 Identities=24% Similarity=0.232 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhhhH---HHHHHHHHhHHHhhhhhhhhhhhhhHHH
Q 005373 319 QDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDER---KMLQMAEVWREERVQMKLVDAKVAVEQK 395 (699)
Q Consensus 319 kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres~k~reE~EeER---~MLqmAEvWREERVQMKL~dAk~~leeK 395 (699)
.+|...|+.-+-||.-|+.|.++|..++.+++.. . ++. +.+. ++|||.. -=|-.+.+..
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~--~---l~G--d~~~~~TKVlH~~~-----------NPa~~a~~~~ 73 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERR--A---LQG--DYDQSRTKVLHMSL-----------NPTSVARQRL 73 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--S---CCS--CCCTTTEEEEEESS-----------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--h---hcc--ccCCccCeeeeecC-----------ChHHHHHHHH
Confidence 3566666766777777777777777776666541 0 111 2222 5665543 2233333344
Q ss_pred hHHHHHHHHHHHHHH
Q 005373 396 YSQMNKLVAELEAFL 410 (699)
Q Consensus 396 ~s~ldkL~~eLE~FL 410 (699)
-..+++|+.|+|.--
T Consensus 74 ~~~~e~Lq~E~erLr 88 (100)
T 1go4_E 74 REDHSQLQAECERLR 88 (100)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 468899999998743
No 111
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=21.30 E-value=3.4e+02 Score=26.21 Aligned_cols=52 Identities=13% Similarity=0.214 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHH--hhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 005373 232 VEQARTRIQELETERRSSKKKLEHFLR--KVSEEKAAWRSREHEKIRAFIDDLKAEISRER 290 (699)
Q Consensus 232 L~~Ar~rI~eL~~E~~s~k~eie~l~K--qlaEEK~awKskE~eki~a~i~slk~ELe~ER 290 (699)
.+..|..+.+|.++....+.++..|+. ++.+.++ +++...|..++.+|..+|
T Consensus 80 ~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI-------~aL~~Ei~~Lr~qL~~~R 133 (175)
T 3lay_A 80 YDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKI-------NAVAKEMESLGQKLDEQR 133 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 345566677777777777777777763 3444444 233333444555555444
No 112
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=21.01 E-value=6.5e+02 Score=25.38 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=8.5
Q ss_pred HHHHHHHHhhHHHHhhh
Q 005373 347 AEVEALKRESMKLREEV 363 (699)
Q Consensus 347 aEVe~LKres~k~reE~ 363 (699)
.+++.++.+..+...++
T Consensus 192 k~~eK~~~k~~k~~~~~ 208 (350)
T 3aco_A 192 EQLKKLQDKIEKCKQDV 208 (350)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555544443
No 113
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=20.99 E-value=4.1e+02 Score=22.97 Aligned_cols=41 Identities=20% Similarity=0.437 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHhhHHHHHH
Q 005373 226 AALEAEVEQARTRIQELETER---RSSKKKLEHFLRKVSEEKAA 266 (699)
Q Consensus 226 ~aLk~EL~~Ar~rI~eL~~E~---~s~k~eie~l~KqlaEEK~a 266 (699)
..|+.++.++++.|+-|.+-+ ..-+.+|+.++.++..|++.
T Consensus 14 rrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~ 57 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAE 57 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 457778888888777665543 45556788888877776653
No 114
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=20.49 E-value=3.1e+02 Score=24.75 Aligned_cols=46 Identities=20% Similarity=0.345 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhh
Q 005373 307 LADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRES 356 (699)
Q Consensus 307 Lae~Kss~~~a~kelE~ERKaRellE~vCdELAkeI~edkaEVe~LKres 356 (699)
|..+-.-+.++++++|.. |.--|.|-|.|++ |+|-++-+.+|+.++
T Consensus 43 lt~MH~~Ll~~i~~~ee~---R~~yE~LQDkL~q-i~eAR~ALdaLR~eH 88 (98)
T 3f1i_H 43 INGMHPQLLELLNQLDER---RLYYEGLQDKLAQ-IRDARGALSALREEH 88 (98)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 334444445566666654 4567777788774 788888888887774
No 115
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=20.34 E-value=2e+02 Score=22.95 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005373 296 IEIVNSKLVNELADAKVSAKRYMQDYE 322 (699)
Q Consensus 296 ~E~ln~KL~~ELae~Kss~~~a~kelE 322 (699)
+-.-|.||+..|.+++.-+.+.-.+++
T Consensus 21 L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 21 LAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334488888888766655555544443
No 116
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=20.13 E-value=5e+02 Score=23.70 Aligned_cols=25 Identities=16% Similarity=0.401 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHH
Q 005373 274 KIRAFIDDLKAEISRERKNRQRIEI 298 (699)
Q Consensus 274 ki~a~i~slk~ELe~ERk~Rkr~E~ 298 (699)
++.+.+..++++|+.++..|+.+|.
T Consensus 10 ~lq~~~~ql~~qL~k~~~~r~~Le~ 34 (112)
T 1x79_B 10 KLQLMLRQANDQLEKTMKDKQELED 34 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555544444443
No 117
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=20.09 E-value=4.4e+02 Score=29.16 Aligned_cols=35 Identities=20% Similarity=0.140 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 005373 222 VSMVAALEAEVEQARTRIQELETERRSSKKKLEHF 256 (699)
Q Consensus 222 ~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l 256 (699)
+.-|-+|-.+....+.++.+|.+++-...++|-.+
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~ 66 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKR 66 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666677766666666655444
Done!