Query 005374
Match_columns 699
No_of_seqs 520 out of 3315
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 22:26:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005374.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005374hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190 Protein disulfide isom 100.0 1.3E-36 2.8E-41 334.0 26.9 334 135-578 24-364 (493)
2 KOG4277 Uncharacterized conser 100.0 4E-29 8.7E-34 252.8 24.5 276 151-516 41-329 (468)
3 TIGR01130 ER_PDI_fam protein d 100.0 1.7E-27 3.6E-32 267.0 27.4 333 137-576 2-343 (462)
4 PTZ00102 disulphide isomerase; 99.9 3.3E-25 7.1E-30 250.4 27.2 318 137-577 33-355 (477)
5 KOG0713 Molecular chaperone (D 99.9 8.5E-24 1.8E-28 220.0 6.8 147 34-194 13-165 (336)
6 KOG0912 Thiol-disulfide isomer 99.8 9.2E-20 2E-24 186.0 18.1 283 141-502 1-291 (375)
7 cd03006 PDI_a_EFP1_N PDIa fami 99.8 5.2E-21 1.1E-25 175.0 6.9 101 136-249 9-113 (113)
8 COG0484 DnaJ DnaJ-class molecu 99.8 3.7E-20 7.9E-25 198.0 7.5 70 36-105 3-75 (371)
9 KOG0191 Thioredoxin/protein di 99.8 7.6E-19 1.7E-23 193.8 16.8 211 139-366 32-254 (383)
10 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 6.5E-20 1.4E-24 163.8 6.5 100 137-249 2-101 (101)
11 cd03007 PDI_a_ERp29_N PDIa fam 99.8 7.6E-20 1.6E-24 167.1 5.6 103 138-252 3-115 (116)
12 PF01216 Calsequestrin: Calseq 99.8 7.9E-17 1.7E-21 168.0 28.1 332 124-559 26-369 (383)
13 cd02996 PDI_a_ERp44 PDIa famil 99.8 7.1E-19 1.5E-23 159.1 6.2 101 137-249 2-108 (108)
14 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 6.7E-19 1.5E-23 157.9 5.9 101 137-249 2-104 (104)
15 KOG0712 Molecular chaperone (D 99.7 2E-18 4.3E-23 182.4 6.8 70 36-105 3-72 (337)
16 PF00085 Thioredoxin: Thioredo 99.7 3.2E-18 6.9E-23 151.9 5.1 102 138-252 1-103 (103)
17 cd03002 PDI_a_MPD1_like PDI fa 99.7 1.1E-17 2.3E-22 151.0 7.4 105 138-249 2-108 (109)
18 cd02994 PDI_a_TMX PDIa family, 99.7 1.6E-17 3.6E-22 148.1 6.7 98 137-250 2-100 (101)
19 cd03001 PDI_a_P5 PDIa family, 99.7 6.1E-17 1.3E-21 144.2 6.9 100 138-249 2-102 (103)
20 cd02993 PDI_a_APS_reductase PD 99.7 3.8E-17 8.2E-22 148.4 5.6 102 137-249 2-109 (109)
21 cd03065 PDI_b_Calsequestrin_N 99.7 1.3E-16 2.8E-21 147.3 8.2 102 137-252 10-118 (120)
22 KOG0190 Protein disulfide isom 99.7 7.5E-17 1.6E-21 178.3 7.1 104 136-252 366-472 (493)
23 cd03005 PDI_a_ERp46 PDIa famil 99.7 9.1E-17 2E-21 142.9 5.4 98 138-249 2-102 (102)
24 cd02995 PDI_a_PDI_a'_C PDIa fa 99.7 1.7E-16 3.6E-21 141.3 7.0 100 138-249 2-104 (104)
25 PRK14288 chaperone protein Dna 99.6 8.7E-17 1.9E-21 176.1 5.3 69 36-104 2-73 (369)
26 cd02963 TRX_DnaJ TRX domain, D 99.6 1.3E-16 2.8E-21 145.5 5.3 100 139-251 7-110 (111)
27 PTZ00443 Thioredoxin domain-co 99.6 1.2E-16 2.6E-21 162.8 4.9 106 135-253 29-139 (224)
28 PRK14296 chaperone protein Dna 99.6 1.8E-16 4E-21 173.6 6.1 69 36-104 3-73 (372)
29 KOG1731 FAD-dependent sulfhydr 99.6 4.4E-16 9.5E-21 171.5 7.8 215 137-363 40-272 (606)
30 TIGR01126 pdi_dom protein disu 99.6 1.6E-15 3.6E-20 134.3 7.2 99 141-252 1-101 (102)
31 cd02997 PDI_a_PDIR PDIa family 99.6 1E-15 2.2E-20 136.4 5.9 101 138-249 2-104 (104)
32 PTZ00037 DnaJ_C chaperone prot 99.6 6.7E-16 1.4E-20 171.0 5.5 68 36-104 27-94 (421)
33 cd02956 ybbN ybbN protein fami 99.6 1.4E-15 3E-20 134.3 6.3 93 144-249 1-95 (96)
34 KOG0910 Thioredoxin-like prote 99.6 9.5E-16 2.1E-20 144.2 5.2 103 137-252 44-147 (150)
35 cd02998 PDI_a_ERp38 PDIa famil 99.6 2.5E-15 5.4E-20 133.9 7.5 100 138-249 2-105 (105)
36 cd02999 PDI_a_ERp44_like PDIa 99.6 1.8E-15 4E-20 135.4 6.6 84 151-249 16-100 (100)
37 PRK14279 chaperone protein Dna 99.6 9.1E-16 2E-20 169.2 5.2 67 36-102 8-77 (392)
38 PRK14286 chaperone protein Dna 99.6 9.3E-16 2E-20 168.1 5.3 68 37-104 4-74 (372)
39 KOG0717 Molecular chaperone (D 99.6 2.6E-16 5.7E-21 168.7 0.1 70 36-105 7-80 (508)
40 PRK14287 chaperone protein Dna 99.6 1.4E-15 2.9E-20 166.8 5.5 69 36-104 3-73 (371)
41 TIGR02187 GlrX_arch Glutaredox 99.6 5.3E-14 1.1E-18 143.3 16.0 188 153-362 19-214 (215)
42 cd02992 PDI_a_QSOX PDIa family 99.6 4.5E-15 9.7E-20 136.1 7.3 104 137-247 2-110 (114)
43 PRK14298 chaperone protein Dna 99.6 2.1E-15 4.5E-20 165.6 5.9 69 36-104 4-74 (377)
44 PRK14276 chaperone protein Dna 99.6 2.2E-15 4.8E-20 165.7 5.9 68 37-104 4-73 (380)
45 TIGR00424 APS_reduc 5'-adenyly 99.6 2.8E-15 6.1E-20 166.9 6.4 105 137-251 352-461 (463)
46 PRK14283 chaperone protein Dna 99.6 2.5E-15 5.4E-20 165.3 5.7 69 36-104 4-74 (378)
47 PRK14282 chaperone protein Dna 99.6 2.9E-15 6.3E-20 164.2 6.2 69 36-104 3-75 (369)
48 PRK09381 trxA thioredoxin; Pro 99.6 6.1E-15 1.3E-19 133.4 7.0 103 137-252 4-107 (109)
49 COG3118 Thioredoxin domain-con 99.6 3.8E-15 8.2E-20 153.9 6.2 103 137-252 24-129 (304)
50 PRK14285 chaperone protein Dna 99.5 3E-15 6.5E-20 163.7 5.6 68 37-104 3-73 (365)
51 PRK14278 chaperone protein Dna 99.5 4.2E-15 9E-20 163.4 6.6 66 37-102 3-70 (378)
52 PRK14299 chaperone protein Dna 99.5 3.9E-15 8.5E-20 158.2 5.6 67 37-103 4-72 (291)
53 PRK14280 chaperone protein Dna 99.5 3.9E-15 8.5E-20 163.5 5.5 68 37-104 4-73 (376)
54 KOG0716 Molecular chaperone (D 99.5 4E-15 8.6E-20 150.9 5.0 72 36-107 30-104 (279)
55 PRK14291 chaperone protein Dna 99.5 4.6E-15 9.9E-20 163.3 5.9 69 36-104 2-72 (382)
56 PRK14297 chaperone protein Dna 99.5 4.7E-15 1E-19 163.2 6.0 68 37-104 4-74 (380)
57 PRK14294 chaperone protein Dna 99.5 4.3E-15 9.2E-20 162.8 5.4 69 36-104 3-74 (366)
58 KOG0721 Molecular chaperone (D 99.5 1.2E-14 2.5E-19 143.0 7.8 96 9-104 69-169 (230)
59 PRK14277 chaperone protein Dna 99.5 4.6E-15 9.9E-20 163.6 5.5 69 36-104 4-75 (386)
60 cd02961 PDI_a_family Protein D 99.5 5.5E-15 1.2E-19 129.4 4.9 98 140-249 2-101 (101)
61 PRK14301 chaperone protein Dna 99.5 5.6E-15 1.2E-19 162.1 5.9 69 36-104 3-74 (373)
62 cd03000 PDI_a_TMX3 PDIa family 99.5 1.7E-14 3.7E-19 129.7 7.9 94 144-252 7-103 (104)
63 PLN02309 5'-adenylylsulfate re 99.5 7.4E-15 1.6E-19 163.5 6.2 105 136-252 345-456 (457)
64 PRK14284 chaperone protein Dna 99.5 6.7E-15 1.4E-19 162.5 5.4 68 37-104 1-71 (391)
65 PF00226 DnaJ: DnaJ domain; I 99.5 6.9E-15 1.5E-19 120.7 3.9 60 38-97 1-64 (64)
66 PRK14281 chaperone protein Dna 99.5 9.9E-15 2.1E-19 161.4 6.0 68 37-104 3-73 (397)
67 PRK14295 chaperone protein Dna 99.5 9.9E-15 2.1E-19 160.9 5.4 69 36-104 8-83 (389)
68 PHA02278 thioredoxin-like prot 99.5 1E-14 2.3E-19 131.3 4.0 96 143-248 4-100 (103)
69 PRK10767 chaperone protein Dna 99.5 1.4E-14 3.1E-19 159.0 5.8 69 36-104 3-74 (371)
70 PRK14290 chaperone protein Dna 99.5 2.9E-14 6.3E-19 156.2 6.4 68 37-104 3-74 (365)
71 PRK14300 chaperone protein Dna 99.5 2.5E-14 5.4E-19 157.0 5.6 68 37-104 3-72 (372)
72 PRK10996 thioredoxin 2; Provis 99.5 2.7E-14 5.9E-19 135.6 5.0 103 137-252 36-138 (139)
73 TIGR02349 DnaJ_bact chaperone 99.5 3E-14 6.4E-19 155.7 5.9 67 38-104 1-69 (354)
74 KOG0718 Molecular chaperone (D 99.5 1.8E-14 3.9E-19 154.6 4.1 70 36-105 8-83 (546)
75 PRK14292 chaperone protein Dna 99.5 3.6E-14 7.7E-19 155.9 5.8 67 37-103 2-70 (371)
76 PRK14293 chaperone protein Dna 99.5 3.8E-14 8.3E-19 155.7 6.0 69 36-104 2-72 (374)
77 PTZ00341 Ring-infected erythro 99.5 4E-14 8.6E-19 164.1 6.0 70 36-105 572-643 (1136)
78 cd02962 TMX2 TMX2 family; comp 99.5 3.3E-14 7.1E-19 136.8 4.5 90 136-228 28-120 (152)
79 KOG0715 Molecular chaperone (D 99.5 4.4E-14 9.6E-19 149.2 5.2 68 36-103 42-111 (288)
80 PF13848 Thioredoxin_6: Thiore 99.5 5.9E-12 1.3E-16 123.7 20.0 153 292-510 8-162 (184)
81 cd02985 TRX_CDSP32 TRX family, 99.5 5.3E-14 1.2E-18 126.5 5.0 96 143-250 3-100 (103)
82 PRK14289 chaperone protein Dna 99.5 4.1E-14 9E-19 156.1 5.2 69 36-104 4-75 (386)
83 KOG0691 Molecular chaperone (D 99.4 5.8E-14 1.2E-18 147.3 4.3 69 36-104 4-75 (296)
84 TIGR01068 thioredoxin thioredo 99.4 1.4E-13 3.1E-18 121.3 6.1 99 141-252 1-100 (101)
85 PRK10266 curved DNA-binding pr 99.4 7.7E-14 1.7E-18 149.4 4.9 66 37-102 4-71 (306)
86 KOG0719 Molecular chaperone (D 99.4 9.5E-14 2.1E-18 137.6 4.5 68 36-103 13-85 (264)
87 cd02957 Phd_like Phosducin (Ph 99.4 1.4E-13 3E-18 125.9 5.1 83 135-228 3-88 (113)
88 cd02965 HyaE HyaE family; HyaE 99.4 2E-13 4.3E-18 123.8 5.9 96 138-246 12-109 (111)
89 PTZ00102 disulphide isomerase; 99.4 2.1E-13 4.5E-18 154.4 7.4 107 135-253 356-465 (477)
90 cd02948 TRX_NDPK TRX domain, T 99.4 1.3E-13 2.8E-18 123.8 4.5 96 141-251 5-101 (102)
91 KOG0191 Thioredoxin/protein di 99.4 4E-13 8.6E-18 148.4 8.6 105 137-253 145-252 (383)
92 cd02954 DIM1 Dim1 family; Dim1 99.4 8.1E-14 1.7E-18 127.2 1.8 76 144-228 3-80 (114)
93 smart00271 DnaJ DnaJ molecular 99.4 5.7E-13 1.2E-17 107.6 5.9 55 37-91 1-59 (60)
94 KOG0722 Molecular chaperone (D 99.4 3.8E-13 8.2E-18 134.5 5.7 89 11-99 7-97 (329)
95 cd06257 DnaJ DnaJ domain or J- 99.4 7.7E-13 1.7E-17 104.8 5.9 52 38-89 1-55 (55)
96 PHA03102 Small T antigen; Revi 99.4 6.5E-13 1.4E-17 126.8 5.6 67 37-104 5-73 (153)
97 cd02953 DsbDgamma DsbD gamma f 99.4 7.7E-13 1.7E-17 118.7 5.6 96 144-249 2-103 (104)
98 KOG0624 dsRNA-activated protei 99.3 1.3E-12 2.7E-17 136.4 7.4 67 36-103 393-465 (504)
99 cd02989 Phd_like_TxnDC9 Phosdu 99.3 1.6E-12 3.4E-17 119.2 6.3 82 137-228 5-87 (113)
100 cd02950 TxlA TRX-like protein 99.3 3.6E-12 7.7E-17 121.6 7.0 103 143-256 10-113 (142)
101 TIGR01130 ER_PDI_fam protein d 99.3 2.4E-12 5.3E-17 144.5 6.8 104 136-252 346-453 (462)
102 TIGR03835 termin_org_DnaJ term 99.3 2E-12 4.4E-17 147.2 5.9 67 37-103 2-70 (871)
103 cd02947 TRX_family TRX family; 99.3 5.2E-12 1.1E-16 108.2 6.2 91 145-249 2-92 (93)
104 cd02984 TRX_PICOT TRX domain, 99.3 2.6E-12 5.7E-17 113.2 3.7 93 143-249 2-96 (97)
105 PTZ00051 thioredoxin; Provisio 99.2 4.6E-12 1E-16 112.0 4.2 92 139-245 3-95 (98)
106 cd02949 TRX_NTR TRX domain, no 99.2 1.1E-11 2.5E-16 109.9 5.8 86 151-249 11-96 (97)
107 COG2214 CbpA DnaJ-class molecu 99.2 1.4E-11 3E-16 123.9 5.6 65 36-100 5-73 (237)
108 KOG0907 Thioredoxin [Posttrans 99.2 2.4E-11 5.3E-16 109.9 6.6 84 152-250 20-103 (106)
109 PLN00410 U5 snRNP protein, DIM 99.2 1.7E-11 3.7E-16 116.2 4.5 97 143-251 11-118 (142)
110 cd02975 PfPDO_like_N Pyrococcu 99.2 3.4E-11 7.4E-16 110.3 6.0 95 146-252 15-109 (113)
111 cd02987 Phd_like_Phd Phosducin 99.1 3.1E-11 6.8E-16 119.0 5.0 81 137-228 63-147 (175)
112 TIGR01295 PedC_BrcD bacterioci 99.1 4.5E-11 9.7E-16 111.1 5.7 104 138-249 8-120 (122)
113 cd02982 PDI_b'_family Protein 99.1 7.2E-11 1.6E-15 105.2 6.4 88 152-252 11-102 (103)
114 PRK01356 hscB co-chaperone Hsc 99.1 9.2E-11 2E-15 114.4 5.5 62 37-98 2-71 (166)
115 PRK05014 hscB co-chaperone Hsc 99.1 1.5E-10 3.2E-15 113.7 5.8 62 37-98 1-72 (171)
116 cd02986 DLP Dim1 family, Dim1- 99.1 7.9E-11 1.7E-15 107.0 3.1 75 145-228 4-80 (114)
117 TIGR00411 redox_disulf_1 small 99.0 5.5E-10 1.2E-14 95.2 7.5 80 156-252 2-81 (82)
118 cd02983 P5_C P5 family, C-term 99.0 3E-09 6.4E-14 100.0 12.8 117 377-569 3-125 (130)
119 cd02988 Phd_like_VIAF Phosduci 99.0 1.9E-10 4.1E-15 115.1 4.7 79 137-228 83-164 (192)
120 COG5407 SEC63 Preprotein trans 99.0 2.7E-10 5.9E-15 122.1 5.4 69 36-104 97-173 (610)
121 PRK03578 hscB co-chaperone Hsc 99.0 3.9E-10 8.4E-15 111.0 6.1 64 35-98 4-77 (176)
122 PRK00294 hscB co-chaperone Hsc 99.0 5.6E-10 1.2E-14 109.5 5.9 63 36-98 3-75 (173)
123 PTZ00100 DnaJ chaperone protei 99.0 6.3E-10 1.4E-14 101.2 5.1 52 36-88 64-115 (116)
124 KOG0908 Thioredoxin-like prote 99.0 8.3E-10 1.8E-14 111.1 6.4 104 138-256 3-109 (288)
125 cd02951 SoxW SoxW family; SoxW 99.0 6.9E-10 1.5E-14 102.9 5.4 95 149-252 9-118 (125)
126 KOG0720 Molecular chaperone (D 98.9 6E-10 1.3E-14 120.5 4.7 65 36-100 234-300 (490)
127 KOG0714 Molecular chaperone (D 98.9 6.1E-10 1.3E-14 117.2 4.0 69 36-104 2-74 (306)
128 PF13848 Thioredoxin_6: Thiore 98.9 5.5E-08 1.2E-12 95.5 16.7 169 171-362 8-184 (184)
129 PTZ00062 glutaredoxin; Provisi 98.8 1.6E-08 3.5E-13 101.9 10.7 162 143-336 6-174 (204)
130 cd02952 TRP14_like Human TRX-r 98.8 1.9E-09 4.2E-14 99.5 3.3 79 143-227 9-101 (119)
131 PHA02624 large T antigen; Prov 98.8 3.2E-09 6.9E-14 120.4 5.4 60 36-96 10-71 (647)
132 PRK09430 djlA Dna-J like membr 98.8 4.1E-09 8.9E-14 110.7 4.5 53 37-89 200-262 (267)
133 KOG0550 Molecular chaperone (D 98.8 4.3E-09 9.3E-14 112.8 3.7 64 36-99 372-439 (486)
134 TIGR02187 GlrX_arch Glutaredox 98.7 3.1E-08 6.6E-13 101.0 8.0 82 153-251 133-214 (215)
135 PHA02125 thioredoxin-like prot 98.7 1.8E-08 3.9E-13 85.3 4.7 69 157-247 2-71 (75)
136 KOG0913 Thiol-disulfide isomer 98.7 6.7E-09 1.5E-13 104.0 1.4 102 135-252 23-125 (248)
137 TIGR00412 redox_disulf_2 small 98.6 4E-08 8.6E-13 83.5 5.0 73 157-249 2-75 (76)
138 cd02959 ERp19 Endoplasmic reti 98.6 2.6E-08 5.7E-13 91.8 4.1 90 151-249 17-109 (117)
139 PRK00293 dipZ thiol:disulfide 98.6 9.9E-08 2.2E-12 110.7 8.3 101 143-252 460-569 (571)
140 PF13098 Thioredoxin_2: Thiore 98.6 4.7E-08 1E-12 88.4 3.8 88 152-249 4-112 (112)
141 KOG1150 Predicted molecular ch 98.5 7.6E-08 1.7E-12 93.7 4.9 64 34-97 50-117 (250)
142 PRK01773 hscB co-chaperone Hsc 98.5 9.9E-08 2.1E-12 93.7 5.5 62 37-98 2-73 (173)
143 PRK03147 thiol-disulfide oxido 98.4 4.1E-07 8.8E-12 88.8 7.6 92 152-252 60-171 (173)
144 cd02973 TRX_GRX_like Thioredox 98.4 4.3E-07 9.4E-12 74.6 5.1 57 156-222 2-58 (67)
145 TIGR02740 TraF-like TraF-like 98.4 6.4E-07 1.4E-11 94.5 7.5 90 152-252 165-263 (271)
146 TIGR00714 hscB Fe-S protein as 98.3 5.1E-07 1.1E-11 87.5 5.2 50 49-98 3-60 (157)
147 cd03011 TlpA_like_ScsD_MtbDsbE 98.3 1.6E-06 3.4E-11 79.7 6.9 93 141-247 8-120 (123)
148 KOG0914 Thioredoxin-like prote 98.3 7E-07 1.5E-11 88.5 4.2 85 142-229 131-218 (265)
149 cd02955 SSP411 TRX domain, SSP 98.3 7.4E-07 1.6E-11 83.1 4.0 79 146-227 8-91 (124)
150 TIGR02738 TrbB type-F conjugat 98.2 2.8E-06 6.1E-11 82.1 7.4 95 150-252 47-152 (153)
151 cd03009 TryX_like_TryX_NRX Try 98.2 2.7E-06 5.9E-11 79.3 6.5 69 152-226 17-109 (131)
152 PRK14018 trifunctional thiored 98.2 2.9E-06 6.3E-11 96.5 7.8 88 151-251 54-171 (521)
153 COG5269 ZUO1 Ribosome-associat 98.2 1.5E-06 3.4E-11 88.3 4.5 65 36-100 42-114 (379)
154 PRK11509 hydrogenase-1 operon 98.2 4.7E-06 1E-10 78.2 7.2 101 140-253 21-124 (132)
155 cd02966 TlpA_like_family TlpA- 98.2 2.9E-06 6.3E-11 75.3 5.5 69 152-226 18-107 (116)
156 cd03026 AhpF_NTD_C TRX-GRX-lik 98.1 4.7E-06 1E-10 73.2 6.5 77 152-246 11-87 (89)
157 cd03007 PDI_a_ERp29_N PDIa fam 98.1 1.9E-05 4.1E-10 72.6 10.8 98 262-363 6-115 (116)
158 cd02967 mauD Methylamine utili 98.1 4.2E-06 9.1E-11 75.8 6.2 64 152-221 20-83 (114)
159 cd03010 TlpA_like_DsbE TlpA-li 98.1 2.2E-06 4.8E-11 79.4 4.5 82 152-245 24-126 (127)
160 cd02964 TryX_like_family Trypa 98.1 4.2E-06 9E-11 78.4 6.2 69 152-226 16-109 (132)
161 cd03065 PDI_b_Calsequestrin_N 98.0 4.3E-05 9.3E-10 70.9 10.7 94 262-362 14-117 (120)
162 PF00085 Thioredoxin: Thioredo 98.0 1.7E-05 3.7E-10 69.9 7.5 96 262-363 4-103 (103)
163 TIGR00385 dsbE periplasmic pro 98.0 8.6E-06 1.9E-10 80.1 5.1 94 152-252 62-170 (173)
164 PRK15412 thiol:disulfide inter 98.0 1.7E-05 3.6E-10 79.0 7.2 94 152-252 67-175 (185)
165 cd03004 PDI_a_ERdj5_C PDIa fam 97.9 4.1E-05 8.9E-10 68.3 8.8 94 262-360 6-104 (104)
166 cd02981 PDI_b_family Protein D 97.9 7.2E-05 1.6E-09 65.8 9.6 94 262-363 4-97 (97)
167 KOG0568 Molecular chaperone (D 97.9 1.7E-05 3.6E-10 79.1 5.5 54 37-90 47-103 (342)
168 cd02958 UAS UAS family; UAS is 97.8 3E-05 6.4E-10 70.9 6.2 98 145-252 5-110 (114)
169 KOG1789 Endocytosis protein RM 97.8 1.5E-05 3.3E-10 93.1 4.8 53 36-88 1280-1336(2235)
170 cd03008 TryX_like_RdCVF Trypar 97.8 2.3E-05 5E-10 75.1 5.1 75 152-226 24-122 (146)
171 cd03006 PDI_a_EFP1_N PDIa fami 97.8 8.3E-05 1.8E-09 68.2 8.4 97 260-360 12-113 (113)
172 cd03066 PDI_b_Calsequestrin_mi 97.8 0.00016 3.5E-09 64.9 10.2 95 262-364 5-101 (102)
173 cd03002 PDI_a_MPD1_like PDI fa 97.8 0.00012 2.5E-09 65.7 9.1 96 262-360 5-108 (109)
174 PRK13728 conjugal transfer pro 97.8 4.2E-05 9E-10 75.7 6.7 88 157-252 73-170 (181)
175 cd03069 PDI_b_ERp57 PDIb famil 97.8 0.00015 3.3E-09 65.3 9.3 93 262-363 5-103 (104)
176 PF13905 Thioredoxin_8: Thiore 97.8 2.9E-05 6.3E-10 68.0 4.5 44 153-196 1-46 (95)
177 cd01659 TRX_superfamily Thiore 97.7 4.9E-05 1.1E-09 58.9 5.1 63 157-226 1-63 (69)
178 PLN02919 haloacid dehalogenase 97.7 5.5E-05 1.2E-09 93.8 7.7 92 152-253 419-536 (1057)
179 cd03003 PDI_a_ERdj5_N PDIa fam 97.7 0.00016 3.5E-09 64.2 8.7 91 262-359 6-100 (101)
180 COG4232 Thiol:disulfide interc 97.7 4.1E-05 8.8E-10 86.8 5.1 98 145-252 464-567 (569)
181 PF13899 Thioredoxin_7: Thiore 97.7 3.7E-05 8E-10 66.0 3.5 64 151-224 15-81 (82)
182 cd02996 PDI_a_ERp44 PDIa famil 97.7 0.00019 4.1E-09 64.6 8.3 93 262-360 6-108 (108)
183 cd03001 PDI_a_P5 PDIa family, 97.6 0.00028 6.1E-09 62.4 8.8 89 268-360 10-102 (103)
184 TIGR02196 GlrX_YruB Glutaredox 97.6 0.00011 2.4E-09 60.4 5.5 71 157-249 2-73 (74)
185 COG0526 TrxA Thiol-disulfide i 97.6 0.00015 3.3E-09 63.3 6.1 68 153-227 32-100 (127)
186 cd02993 PDI_a_APS_reductase PD 97.5 0.00035 7.6E-09 63.2 7.9 97 262-360 6-109 (109)
187 TIGR01126 pdi_dom protein disu 97.5 0.00057 1.2E-08 60.0 9.0 90 268-363 6-101 (102)
188 cd03012 TlpA_like_DipZ_like Tl 97.5 0.00025 5.3E-09 65.8 6.9 42 152-193 22-64 (126)
189 PLN02399 phospholipid hydroper 97.5 0.00047 1E-08 71.3 9.5 98 152-252 98-233 (236)
190 TIGR02661 MauD methylamine deh 97.5 0.00043 9.3E-09 69.2 8.6 91 152-250 73-176 (189)
191 cd03073 PDI_b'_ERp72_ERp57 PDI 97.4 0.0014 3.1E-08 59.9 10.9 90 406-558 16-111 (111)
192 COG3118 Thioredoxin domain-con 97.4 0.00041 8.8E-09 72.8 7.6 98 261-363 27-129 (304)
193 TIGR00424 APS_reduc 5'-adenyly 97.4 0.00065 1.4E-08 76.7 9.7 102 260-362 354-461 (463)
194 smart00594 UAS UAS domain. 97.4 0.00039 8.5E-09 64.5 6.7 98 145-249 15-121 (122)
195 PRK11509 hydrogenase-1 operon 97.4 0.0016 3.4E-08 61.3 10.7 94 267-366 26-126 (132)
196 PF07912 ERp29_N: ERp29, N-ter 97.4 0.00039 8.4E-09 63.8 6.3 105 139-252 7-118 (126)
197 PTZ00056 glutathione peroxidas 97.3 0.00084 1.8E-08 67.8 9.1 57 152-208 38-103 (199)
198 cd02982 PDI_b'_family Protein 97.3 0.002 4.4E-08 57.0 9.8 61 407-502 14-75 (103)
199 cd02956 ybbN ybbN protein fami 97.3 0.0013 2.8E-08 57.6 8.4 81 278-361 12-96 (96)
200 PF13192 Thioredoxin_3: Thiore 97.2 0.00047 1E-08 58.5 5.0 73 158-250 3-76 (76)
201 cd02981 PDI_b_family Protein D 97.2 0.00071 1.5E-08 59.4 6.4 86 147-251 11-96 (97)
202 cd02965 HyaE HyaE family; HyaE 97.2 0.0025 5.5E-08 58.2 10.0 101 245-356 2-108 (111)
203 cd03068 PDI_b_ERp72 PDIb famil 97.2 0.0025 5.5E-08 57.8 9.6 95 262-363 5-107 (107)
204 cd02998 PDI_a_ERp38 PDIa famil 97.2 0.0017 3.7E-08 57.3 8.2 82 278-360 18-105 (105)
205 PLN02412 probable glutathione 97.2 0.0019 4.1E-08 63.2 9.1 43 152-194 28-71 (167)
206 cd02960 AGR Anterior Gradient 97.2 0.00025 5.3E-09 66.6 2.6 73 145-227 11-90 (130)
207 cd03072 PDI_b'_ERp44 PDIb' fam 97.1 0.0035 7.6E-08 57.3 10.1 92 406-559 18-109 (111)
208 cd02999 PDI_a_ERp44_like PDIa 97.1 0.0019 4E-08 57.8 7.9 79 278-360 18-100 (100)
209 cd02995 PDI_a_PDI_a'_C PDIa fa 97.1 0.0021 4.5E-08 56.7 7.8 78 280-360 21-104 (104)
210 TIGR02540 gpx7 putative glutat 97.1 0.0028 6.1E-08 60.9 9.3 42 152-193 21-63 (153)
211 PLN02309 5'-adenylylsulfate re 97.0 0.0022 4.7E-08 72.4 9.3 99 262-362 350-455 (457)
212 cd02994 PDI_a_TMX PDIa family, 97.0 0.0033 7.2E-08 55.6 8.7 79 280-362 19-101 (101)
213 TIGR03143 AhpF_homolog putativ 97.0 0.014 2.9E-07 68.2 16.1 184 152-360 365-554 (555)
214 KOG0723 Molecular chaperone (D 97.0 0.0011 2.4E-08 59.0 5.3 49 41-90 60-108 (112)
215 TIGR02200 GlrX_actino Glutared 97.0 0.00054 1.2E-08 57.2 3.3 58 157-227 2-61 (77)
216 cd03005 PDI_a_ERp46 PDIa famil 97.0 0.0023 5E-08 56.3 7.5 87 268-360 10-102 (102)
217 cd02961 PDI_a_family Protein D 97.0 0.0026 5.6E-08 55.0 7.5 79 280-360 18-101 (101)
218 cd00340 GSH_Peroxidase Glutath 97.0 0.002 4.4E-08 61.9 7.4 42 152-194 21-63 (152)
219 cd02997 PDI_a_PDIR PDIa family 97.0 0.0029 6.4E-08 55.8 7.9 90 268-360 10-104 (104)
220 TIGR01068 thioredoxin thioredo 96.9 0.0048 1E-07 53.8 8.8 91 268-363 6-100 (101)
221 cd02963 TRX_DnaJ TRX domain, D 96.9 0.0031 6.8E-08 57.3 7.9 82 278-362 24-110 (111)
222 cd02953 DsbDgamma DsbD gamma f 96.9 0.0033 7.2E-08 56.0 7.6 63 298-360 38-103 (104)
223 PF13728 TraF: F plasmid trans 96.8 0.0021 4.7E-08 65.6 6.3 86 152-247 119-212 (215)
224 KOG0910 Thioredoxin-like prote 96.8 0.0038 8.2E-08 59.6 7.4 82 279-363 63-147 (150)
225 cd03067 PDI_b_PDIR_N PDIb fami 96.8 0.0011 2.3E-08 58.7 3.4 101 143-251 9-110 (112)
226 PF08534 Redoxin: Redoxin; In 96.8 0.0014 2.9E-08 62.1 4.3 55 152-206 27-83 (146)
227 PRK09381 trxA thioredoxin; Pro 96.8 0.0076 1.6E-07 54.1 9.0 82 279-363 22-107 (109)
228 cd02950 TxlA TRX-like protein 96.8 0.0059 1.3E-07 58.2 8.6 87 278-364 20-110 (142)
229 cd02983 P5_C P5 family, C-term 96.8 0.0094 2E-07 56.1 9.8 87 278-366 20-117 (130)
230 PF02114 Phosducin: Phosducin; 96.7 0.0011 2.4E-08 69.8 3.7 112 136-259 125-243 (265)
231 cd02969 PRX_like1 Peroxiredoxi 96.7 0.0061 1.3E-07 59.5 8.4 96 152-252 24-151 (171)
232 PRK10996 thioredoxin 2; Provis 96.7 0.0074 1.6E-07 57.3 8.4 83 278-363 52-138 (139)
233 PTZ00443 Thioredoxin domain-co 96.6 0.0072 1.6E-07 62.1 8.7 100 262-366 35-141 (224)
234 KOG4277 Uncharacterized conser 96.6 0.012 2.7E-07 61.4 10.0 104 268-386 34-144 (468)
235 TIGR02180 GRX_euk Glutaredoxin 96.5 0.0018 3.9E-08 55.0 2.7 60 157-226 1-62 (84)
236 cd02989 Phd_like_TxnDC9 Phosdu 96.5 0.016 3.4E-07 53.1 8.8 94 262-360 9-112 (113)
237 PHA02278 thioredoxin-like prot 96.4 0.012 2.6E-07 53.0 7.8 81 278-359 14-100 (103)
238 cd03072 PDI_b'_ERp44 PDIb' fam 96.4 0.0078 1.7E-07 55.0 6.4 104 138-252 1-107 (111)
239 cd03000 PDI_a_TMX3 PDIa family 96.3 0.022 4.8E-07 50.8 9.0 70 289-362 30-102 (104)
240 cd02948 TRX_NDPK TRX domain, T 96.3 0.021 4.6E-07 50.9 8.5 92 263-362 5-101 (102)
241 cd02954 DIM1 Dim1 family; Dim1 96.3 0.014 3.1E-07 53.6 7.3 62 278-341 14-79 (114)
242 cd02949 TRX_NTR TRX domain, no 96.3 0.015 3.3E-07 51.2 7.3 81 278-361 13-97 (97)
243 cd02957 Phd_like Phosducin (Ph 96.2 0.024 5.2E-07 51.6 8.8 75 262-341 9-87 (113)
244 cd02975 PfPDO_like_N Pyrococcu 96.2 0.038 8.3E-07 50.5 10.0 68 292-362 40-108 (113)
245 cd02985 TRX_CDSP32 TRX family, 96.2 0.029 6.3E-07 50.2 9.0 90 268-361 6-100 (103)
246 TIGR02739 TraF type-F conjugat 96.2 0.0096 2.1E-07 62.3 6.6 91 152-252 149-247 (256)
247 PF07912 ERp29_N: ERp29, N-ter 96.1 0.031 6.7E-07 51.6 8.4 62 303-364 51-119 (126)
248 KOG2603 Oligosaccharyltransfer 96.0 0.03 6.6E-07 59.2 9.1 109 135-252 39-165 (331)
249 PF00578 AhpC-TSA: AhpC/TSA fa 96.0 0.0069 1.5E-07 55.2 3.8 55 152-206 24-80 (124)
250 KOG0907 Thioredoxin [Posttrans 96.0 0.041 8.9E-07 49.9 8.7 81 278-363 21-105 (106)
251 cd02987 Phd_like_Phd Phosducin 96.0 0.033 7.3E-07 55.1 8.8 81 279-363 84-174 (175)
252 KOG3192 Mitochondrial J-type c 95.9 0.005 1.1E-07 58.6 2.6 62 36-97 7-78 (168)
253 KOG0912 Thiol-disulfide isomer 95.9 0.027 5.8E-07 59.3 8.1 117 291-434 30-153 (375)
254 PTZ00256 glutathione peroxidas 95.7 0.046 1E-06 54.3 8.9 42 153-194 40-83 (183)
255 cd03017 PRX_BCP Peroxiredoxin 95.7 0.027 6E-07 52.5 6.6 55 153-207 23-79 (140)
256 cd03015 PRX_Typ2cys Peroxiredo 95.6 0.035 7.6E-07 54.4 7.3 44 152-195 28-73 (173)
257 cd02986 DLP Dim1 family, Dim1- 95.6 0.065 1.4E-06 49.2 8.3 69 277-347 13-85 (114)
258 PRK13703 conjugal pilus assemb 95.5 0.021 4.6E-07 59.4 5.8 91 152-252 142-240 (248)
259 cd02991 UAS_ETEA UAS family, E 95.5 0.019 4E-07 53.0 4.7 94 151-252 15-112 (116)
260 PRK10606 btuE putative glutath 95.5 0.027 5.9E-07 56.1 6.2 80 152-252 24-114 (183)
261 cd02984 TRX_PICOT TRX domain, 95.5 0.061 1.3E-06 46.8 7.8 87 268-360 5-96 (97)
262 TIGR03143 AhpF_homolog putativ 95.5 0.027 5.8E-07 65.7 7.1 79 153-249 475-554 (555)
263 TIGR03137 AhpC peroxiredoxin. 95.5 0.03 6.5E-07 55.9 6.4 43 152-194 30-74 (187)
264 TIGR01626 ytfJ_HI0045 conserve 95.5 0.036 7.8E-07 55.3 6.9 92 152-247 58-174 (184)
265 PLN00410 U5 snRNP protein, DIM 95.5 0.08 1.7E-06 50.6 8.9 96 264-363 10-119 (142)
266 KOG2501 Thioredoxin, nucleored 95.4 0.038 8.1E-07 53.3 6.5 70 152-227 32-126 (157)
267 PRK11200 grxA glutaredoxin 1; 95.4 0.017 3.7E-07 49.8 3.9 80 156-252 2-82 (85)
268 PRK00522 tpx lipid hydroperoxi 95.4 0.026 5.7E-07 55.2 5.6 55 152-207 43-98 (167)
269 cd02970 PRX_like2 Peroxiredoxi 95.3 0.027 5.8E-07 53.0 5.3 55 153-207 23-79 (149)
270 cd02947 TRX_family TRX family; 95.2 0.083 1.8E-06 44.4 7.6 78 279-360 11-92 (93)
271 PRK09437 bcp thioredoxin-depen 95.2 0.05 1.1E-06 52.0 6.9 56 152-207 29-86 (154)
272 PRK15317 alkyl hydroperoxide r 95.2 0.045 9.7E-07 63.3 7.5 83 152-252 115-197 (517)
273 cd02951 SoxW SoxW family; SoxW 95.1 0.068 1.5E-06 49.2 7.2 63 300-362 43-117 (125)
274 PF06110 DUF953: Eukaryotic pr 95.0 0.012 2.5E-07 54.6 1.6 75 152-226 18-99 (119)
275 cd03014 PRX_Atyp2cys Peroxired 94.9 0.049 1.1E-06 51.3 5.6 55 152-207 25-80 (143)
276 cd03018 PRX_AhpE_like Peroxire 94.7 0.047 1E-06 51.6 5.2 54 154-207 29-84 (149)
277 KOG1672 ATP binding protein [P 94.7 0.02 4.4E-07 56.6 2.5 76 143-228 74-149 (211)
278 cd03073 PDI_b'_ERp72_ERp57 PDI 94.6 0.074 1.6E-06 48.6 5.8 100 140-252 3-110 (111)
279 cd02962 TMX2 TMX2 family; comp 94.5 0.12 2.7E-06 49.9 7.5 70 268-340 38-118 (152)
280 TIGR00411 redox_disulf_1 small 94.5 0.22 4.8E-06 41.8 8.2 66 290-362 15-80 (82)
281 cd02968 SCO SCO (an acronym fo 94.4 0.054 1.2E-06 50.7 4.8 43 152-194 21-68 (142)
282 cd02976 NrdH NrdH-redoxin (Nrd 94.1 0.066 1.4E-06 43.5 4.1 54 157-222 2-56 (73)
283 KOG0911 Glutaredoxin-related p 94.1 0.23 5E-06 50.5 8.6 68 151-228 15-82 (227)
284 cd02971 PRX_family Peroxiredox 94.1 0.11 2.3E-06 48.5 5.9 55 152-206 21-77 (140)
285 cd02988 Phd_like_VIAF Phosduci 94.1 0.25 5.4E-06 49.7 8.8 80 278-363 102-191 (192)
286 cd02992 PDI_a_QSOX PDIa family 94.1 0.15 3.2E-06 46.6 6.7 73 268-342 11-90 (114)
287 PRK10382 alkyl hydroperoxide r 94.0 0.12 2.7E-06 51.6 6.6 97 152-252 30-155 (187)
288 PF07449 HyaE: Hydrogenase-1 e 93.8 0.06 1.3E-06 48.9 3.4 80 138-227 11-93 (107)
289 cd03020 DsbA_DsbC_DsbG DsbA fa 93.7 0.096 2.1E-06 52.5 5.1 26 152-177 76-101 (197)
290 cd02066 GRX_family Glutaredoxi 93.6 0.068 1.5E-06 43.2 3.2 54 157-222 2-56 (72)
291 KOG3425 Uncharacterized conser 93.5 0.039 8.4E-07 50.5 1.7 79 145-225 14-104 (128)
292 cd02972 DsbA_family DsbA famil 93.4 0.1 2.3E-06 44.5 4.3 31 157-187 1-31 (98)
293 cd03419 GRX_GRXh_1_2_like Glut 93.4 0.056 1.2E-06 45.6 2.5 58 157-226 2-61 (82)
294 PTZ00051 thioredoxin; Provisio 93.4 0.28 6.1E-06 42.8 7.0 87 262-356 5-95 (98)
295 PRK10877 protein disulfide iso 93.3 0.16 3.5E-06 52.5 6.2 87 152-252 106-230 (232)
296 KOG2640 Thioredoxin [Function 93.1 0.08 1.7E-06 56.1 3.5 87 152-252 75-161 (319)
297 COG1076 DjlA DnaJ-domain-conta 92.8 0.16 3.5E-06 50.2 5.1 52 36-87 112-173 (174)
298 TIGR03140 AhpF alkyl hydropero 92.7 0.28 6E-06 56.8 7.6 83 152-252 116-198 (515)
299 PF01216 Calsequestrin: Calseq 92.5 0.69 1.5E-05 50.0 9.6 95 262-364 39-144 (383)
300 PF00462 Glutaredoxin: Glutare 92.3 0.089 1.9E-06 42.0 2.1 54 157-222 1-55 (60)
301 TIGR02183 GRXA Glutaredoxin, G 92.3 0.14 3E-06 44.4 3.4 80 156-252 1-81 (86)
302 TIGR01295 PedC_BrcD bacterioci 92.2 0.7 1.5E-05 42.9 8.2 81 278-361 23-121 (122)
303 PRK15000 peroxidase; Provision 91.9 0.61 1.3E-05 47.1 8.0 99 152-252 33-161 (200)
304 cd02952 TRP14_like Human TRX-r 91.7 0.89 1.9E-05 42.2 8.2 50 291-340 45-100 (119)
305 TIGR02190 GlrX-dom Glutaredoxi 91.6 0.2 4.3E-06 42.6 3.5 57 154-222 7-63 (79)
306 PF03190 Thioredox_DsbH: Prote 91.5 0.26 5.7E-06 48.1 4.6 68 151-227 35-113 (163)
307 PRK13190 putative peroxiredoxi 91.0 0.74 1.6E-05 46.5 7.7 100 153-252 27-153 (202)
308 PTZ00253 tryparedoxin peroxida 91.0 0.93 2E-05 45.6 8.3 100 152-252 35-163 (199)
309 cd03074 PDI_b'_Calsequestrin_C 91.0 2.5 5.4E-05 38.3 9.8 117 377-558 2-120 (120)
310 cd03023 DsbA_Com1_like DsbA fa 90.9 0.23 4.9E-06 46.7 3.6 31 152-182 4-34 (154)
311 cd03066 PDI_b_Calsequestrin_mi 90.5 0.92 2E-05 40.5 6.9 92 142-252 7-100 (102)
312 PRK10329 glutaredoxin-like pro 90.0 0.35 7.5E-06 41.6 3.6 74 157-252 3-76 (81)
313 PF14595 Thioredoxin_9: Thiore 89.8 0.12 2.6E-06 48.6 0.6 68 152-226 40-107 (129)
314 COG2143 Thioredoxin-related pr 89.7 0.79 1.7E-05 44.2 6.0 88 149-245 38-141 (182)
315 cd03019 DsbA_DsbA DsbA family, 89.6 0.36 7.8E-06 46.9 3.9 38 152-189 14-51 (178)
316 cd03069 PDI_b_ERp57 PDIb famil 89.3 0.84 1.8E-05 41.0 5.7 91 145-252 10-103 (104)
317 PRK13599 putative peroxiredoxi 89.3 0.95 2.1E-05 46.3 6.8 96 155-252 31-155 (215)
318 KOG0431 Auxilin-like protein a 89.2 0.67 1.5E-05 52.6 6.1 45 42-86 393-447 (453)
319 PF13098 Thioredoxin_2: Thiore 89.2 0.59 1.3E-05 41.8 4.7 41 320-360 72-112 (112)
320 cd03016 PRX_1cys Peroxiredoxin 89.2 1.4 3E-05 44.5 7.9 41 155-195 28-69 (203)
321 PF02114 Phosducin: Phosducin; 89.1 1 2.2E-05 47.6 7.0 71 292-366 164-240 (265)
322 KOG3414 Component of the U4/U6 88.8 0.64 1.4E-05 43.1 4.5 72 147-227 15-88 (142)
323 cd02958 UAS UAS family; UAS is 88.3 4 8.6E-05 36.9 9.5 87 277-363 16-110 (114)
324 COG1076 DjlA DnaJ-domain-conta 87.8 0.24 5.2E-06 49.0 1.2 60 39-98 3-72 (174)
325 PRK00293 dipZ thiol:disulfide 87.7 2 4.4E-05 50.4 9.0 64 299-363 502-569 (571)
326 TIGR02740 TraF-like TraF-like 87.5 2.7 5.9E-05 44.6 9.0 72 289-362 181-262 (271)
327 cd03067 PDI_b_PDIR_N PDIb fami 87.4 2.4 5.1E-05 38.1 7.0 91 268-361 12-109 (112)
328 PRK15317 alkyl hydroperoxide r 87.3 18 0.00039 41.9 16.5 173 153-362 19-196 (517)
329 PF07449 HyaE: Hydrogenase-1 e 87.1 1.8 3.9E-05 39.4 6.3 71 266-341 17-93 (107)
330 PRK03147 thiol-disulfide oxido 86.3 3.2 6.9E-05 40.1 8.2 44 320-363 128-171 (173)
331 cd03029 GRX_hybridPRX5 Glutare 86.2 0.78 1.7E-05 37.9 3.3 69 157-249 3-71 (72)
332 TIGR02194 GlrX_NrdH Glutaredox 85.9 0.84 1.8E-05 37.9 3.4 53 158-222 2-54 (72)
333 PRK13189 peroxiredoxin; Provis 85.8 2.4 5.2E-05 43.6 7.4 41 155-195 38-79 (222)
334 TIGR02181 GRX_bact Glutaredoxi 85.6 0.6 1.3E-05 39.3 2.4 53 158-222 2-55 (79)
335 PTZ00062 glutaredoxin; Provisi 85.5 20 0.00043 36.5 13.6 74 280-366 19-96 (204)
336 cd03418 GRX_GRXb_1_3_like Glut 84.7 1.2 2.7E-05 36.7 3.9 53 157-221 2-56 (75)
337 cd03027 GRX_DEP Glutaredoxin ( 84.0 1.5 3.3E-05 36.3 4.1 53 157-221 3-56 (73)
338 PF03656 Pam16: Pam16; InterP 83.5 2 4.2E-05 40.4 4.9 52 38-90 59-110 (127)
339 PTZ00137 2-Cys peroxiredoxin; 82.9 2.4 5.2E-05 44.8 5.9 43 153-195 98-142 (261)
340 TIGR03140 AhpF alkyl hydropero 82.1 26 0.00057 40.5 14.8 173 153-361 19-196 (515)
341 PRK10954 periplasmic protein d 82.1 1.2 2.6E-05 45.1 3.2 41 153-193 37-80 (207)
342 cd03071 PDI_b'_NRX PDIb' famil 82.0 15 0.00033 33.3 9.7 78 407-516 16-96 (116)
343 PF05768 DUF836: Glutaredoxin- 81.1 1.3 2.8E-05 37.8 2.7 80 157-250 2-81 (81)
344 PRK10638 glutaredoxin 3; Provi 80.4 1.9 4.2E-05 36.8 3.5 54 157-222 4-58 (83)
345 TIGR02189 GlrX-like_plant Glut 79.9 1.7 3.7E-05 38.7 3.1 56 157-226 10-69 (99)
346 smart00594 UAS UAS domain. 79.8 9 0.00019 35.3 8.0 55 306-360 62-121 (122)
347 KOG3170 Conserved phosducin-li 79.8 1.9 4.1E-05 43.3 3.5 103 137-252 92-200 (240)
348 PF13462 Thioredoxin_4: Thiore 79.6 1.2 2.6E-05 42.4 2.1 42 152-193 11-54 (162)
349 KOG3171 Conserved phosducin-li 79.3 2 4.4E-05 43.4 3.6 85 133-228 135-223 (273)
350 PHA03050 glutaredoxin; Provisi 78.9 1.4 3.1E-05 40.0 2.3 57 157-222 15-75 (108)
351 PF11009 DUF2847: Protein of u 78.6 0.71 1.5E-05 41.8 0.3 81 143-228 7-90 (105)
352 cd03028 GRX_PICOT_like Glutare 78.4 2.5 5.4E-05 36.9 3.6 50 163-226 21-71 (90)
353 KOG0908 Thioredoxin-like prote 77.8 11 0.00023 39.4 8.3 73 288-365 35-107 (288)
354 COG0695 GrxC Glutaredoxin and 76.8 3.3 7.1E-05 35.5 3.8 53 157-222 3-59 (80)
355 KOG0914 Thioredoxin-like prote 75.6 5.1 0.00011 40.8 5.2 71 269-341 136-216 (265)
356 TIGR00412 redox_disulf_2 small 74.6 9 0.0002 32.2 5.9 61 290-360 14-75 (76)
357 PF11009 DUF2847: Protein of u 74.2 9 0.00019 34.8 6.0 94 262-356 4-104 (105)
358 cd03009 TryX_like_TryX_NRX Try 73.9 9.5 0.00021 35.1 6.5 23 320-342 89-111 (131)
359 TIGR00365 monothiol glutaredox 73.9 4 8.7E-05 36.2 3.7 48 163-222 25-73 (97)
360 cd02973 TRX_GRX_like Thioredox 73.8 9.7 0.00021 30.6 5.8 41 293-336 18-58 (67)
361 PRK13191 putative peroxiredoxi 72.7 5 0.00011 41.1 4.6 42 155-196 36-78 (215)
362 cd03011 TlpA_like_ScsD_MtbDsbE 70.9 21 0.00045 32.1 7.9 37 320-357 83-119 (123)
363 PRK14018 trifunctional thiored 70.2 16 0.00034 42.5 8.4 43 320-362 129-171 (521)
364 PF13728 TraF: F plasmid trans 70.1 22 0.00049 36.3 8.7 76 281-358 124-212 (215)
365 cd03026 AhpF_NTD_C TRX-GRX-lik 69.1 29 0.00062 30.3 8.0 69 278-354 12-84 (89)
366 cd02959 ERp19 Endoplasmic reti 66.1 8.4 0.00018 35.3 4.2 65 277-342 18-88 (117)
367 PF02966 DIM1: Mitosis protein 64.0 5.2 0.00011 37.6 2.4 66 151-226 18-84 (133)
368 cd02964 TryX_like_family Trypa 62.3 21 0.00046 32.9 6.3 22 320-341 89-110 (132)
369 PRK12759 bifunctional gluaredo 62.2 6.8 0.00015 44.1 3.4 60 157-222 4-66 (410)
370 cd03013 PRX5_like Peroxiredoxi 61.2 22 0.00047 34.2 6.3 54 154-207 30-87 (155)
371 KOG1731 FAD-dependent sulfhydr 61.0 16 0.00035 42.2 6.0 53 288-340 71-126 (606)
372 cd02966 TlpA_like_family TlpA- 60.2 37 0.00079 29.1 7.2 22 320-341 87-108 (116)
373 PF11833 DUF3353: Protein of u 59.3 16 0.00034 36.9 5.0 38 46-88 1-38 (194)
374 cd03068 PDI_b_ERp72 PDIb famil 58.5 19 0.00041 32.5 5.0 91 145-251 10-106 (107)
375 PRK10824 glutaredoxin-4; Provi 58.2 10 0.00023 34.9 3.3 29 163-197 28-56 (115)
376 COG2143 Thioredoxin-related pr 57.7 18 0.0004 35.1 4.8 47 320-366 105-154 (182)
377 cd03010 TlpA_like_DsbE TlpA-li 56.6 30 0.00064 31.5 6.1 37 320-356 90-126 (127)
378 TIGR02738 TrbB type-F conjugat 55.2 59 0.0013 31.4 8.1 72 289-362 65-151 (153)
379 cd02955 SSP411 TRX domain, SSP 53.3 1E+02 0.0022 28.7 9.0 18 325-342 75-92 (124)
380 TIGR02739 TraF type-F conjugat 52.2 61 0.0013 34.2 8.2 76 281-358 154-242 (256)
381 cd02991 UAS_ETEA UAS family, E 51.3 1.2E+02 0.0027 27.7 9.3 43 319-361 65-110 (116)
382 KOG3171 Conserved phosducin-li 50.7 52 0.0011 33.6 6.9 83 280-366 162-253 (273)
383 KOG0724 Zuotin and related mol 49.9 14 0.00031 40.2 3.3 53 48-100 3-62 (335)
384 PF13905 Thioredoxin_8: Thiore 49.8 68 0.0015 27.3 7.0 60 278-341 34-93 (95)
385 PF15096 G6B: G6B family 48.8 18 0.00039 35.9 3.3 23 627-649 138-160 (224)
386 KOG2603 Oligosaccharyltransfer 46.7 1.9E+02 0.0042 31.3 10.8 102 262-366 45-168 (331)
387 PLN02919 haloacid dehalogenase 46.5 74 0.0016 40.4 9.2 86 278-363 420-535 (1057)
388 PF13446 RPT: A repeated domai 45.5 20 0.00044 28.9 2.8 44 37-88 5-48 (62)
389 COG4232 Thiol:disulfide interc 44.7 31 0.00068 40.2 5.0 58 306-363 508-567 (569)
390 TIGR00385 dsbE periplasmic pro 44.5 1.2E+02 0.0025 29.6 8.5 44 320-363 127-170 (173)
391 cd03070 PDI_b_ERp44 PDIb famil 43.2 1.5E+02 0.0033 26.2 8.0 69 278-353 17-86 (91)
392 KOG1752 Glutaredoxin and relat 40.8 36 0.00077 30.9 3.8 56 157-222 16-73 (104)
393 PF13192 Thioredoxin_3: Thiore 40.4 1.9E+02 0.0042 23.9 8.1 55 297-361 21-76 (76)
394 cd02967 mauD Methylamine utili 40.3 80 0.0017 27.8 6.1 43 292-334 39-82 (114)
395 PF08082 PRO8NT: PRO8NT (NUC06 39.3 27 0.00058 33.5 2.9 21 678-698 123-143 (152)
396 COG3019 Predicted metal-bindin 37.3 69 0.0015 30.6 5.2 78 154-252 25-103 (149)
397 PRK11657 dsbG disulfide isomer 36.7 20 0.00044 37.5 1.8 40 320-360 209-248 (251)
398 KOG3414 Component of the U4/U6 35.5 3.6E+02 0.0078 25.5 9.4 70 268-340 14-87 (142)
399 PRK13703 conjugal pilus assemb 34.9 1.4E+02 0.003 31.5 7.5 68 290-359 159-236 (248)
400 KOG1672 ATP binding protein [P 34.5 1E+02 0.0022 31.2 6.1 61 278-341 85-148 (211)
401 PF11522 Pik1: Yeast phosphati 33.5 63 0.0014 25.5 3.6 32 601-632 8-49 (51)
402 COG1225 Bcp Peroxiredoxin [Pos 33.0 92 0.002 30.4 5.5 56 152-207 29-86 (157)
403 PF13743 Thioredoxin_5: Thiore 30.5 18 0.0004 35.6 0.3 28 159-186 2-29 (176)
404 PF13462 Thioredoxin_4: Thiore 29.0 71 0.0015 30.0 4.1 35 202-251 128-162 (162)
405 PHA02125 thioredoxin-like prot 28.6 1.3E+02 0.0027 24.9 5.0 26 308-335 26-51 (75)
406 PF14687 DUF4460: Domain of un 28.4 85 0.0018 28.8 4.2 44 47-90 4-54 (112)
407 PF13743 Thioredoxin_5: Thiore 27.9 37 0.0008 33.5 1.9 37 201-245 138-174 (176)
408 PF03988 DUF347: Repeat of Unk 27.5 1E+02 0.0022 24.5 4.0 39 606-645 13-55 (55)
409 TIGR02742 TrbC_Ftype type-F co 26.6 3.3E+02 0.0071 25.7 7.9 44 319-362 60-113 (130)
410 PRK13728 conjugal transfer pro 26.4 3.2E+02 0.0069 27.3 8.2 70 291-362 86-169 (181)
411 cd03023 DsbA_Com1_like DsbA fa 25.1 99 0.0021 28.5 4.2 34 201-249 120-153 (154)
412 PF13417 GST_N_3: Glutathione 24.5 93 0.002 25.6 3.5 69 159-252 1-70 (75)
413 PF09673 TrbC_Ftype: Type-F co 24.5 3.2E+02 0.007 24.9 7.3 21 319-339 60-80 (113)
414 PRK15412 thiol:disulfide inter 24.4 1.2E+02 0.0025 30.0 4.7 44 320-363 132-175 (185)
415 PF12725 DUF3810: Protein of u 23.9 2.3E+02 0.005 30.8 7.3 59 32-90 77-149 (318)
416 cd03041 GST_N_2GST_N GST_N fam 23.5 2E+02 0.0043 23.7 5.4 73 158-252 3-76 (77)
417 PF07315 DUF1462: Protein of u 22.5 2.1E+02 0.0045 25.4 5.2 31 453-483 31-67 (93)
418 PF14946 DUF4501: Domain of un 21.6 1E+02 0.0022 30.1 3.5 45 613-657 83-141 (180)
No 1
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-36 Score=333.98 Aligned_cols=334 Identities=19% Similarity=0.276 Sum_probs=258.2
Q ss_pred cceEEEecCCCCcccccCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcc---cceeeeeccchhhhhHHHHhCCCCcc
Q 005374 135 VHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRLATHLAERKPIGQI 211 (699)
Q Consensus 135 ~~~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~---~~va~Vdc~~~~~~~~L~~k~~i~~~ 211 (699)
...|++||.+||+..|..+..+||+|||||||||++++|+|+++|+.|+.. +.+|+|||+++. .+|++|+
T Consensus 24 ~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~---~~~~~y~---- 96 (493)
T KOG0190|consen 24 EEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEES---DLASKYE---- 96 (493)
T ss_pred ccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhh---hhHhhhc----
Confidence 446999999999999999999999999999999999999999999999874 489999999664 4999998
Q ss_pred cccccccEEEEcCCCCCCCCccccccCCcCHHHHHHHHHHHhccCCcceecccchhhhhhhhhcCCCcEEEEEEcCCCCC
Q 005374 212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGER 291 (699)
Q Consensus 212 f~V~gyPTl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~v~~lP~~~~it~~~~~~~Fl~~~~~~~v~vl~f~~~~~~ 291 (699)
|+|||||++|++|.. +..|+|+|++++|+.|++++ .+|+...+.+.+.++.|+.+. +.+.+.+|.+.. .
T Consensus 97 --v~gyPTlkiFrnG~~----~~~Y~G~r~adgIv~wl~kq--~gPa~~~l~~~~~a~~~l~~~--~~~vig~F~d~~-~ 165 (493)
T KOG0190|consen 97 --VRGYPTLKIFRNGRS----AQDYNGPREADGIVKWLKKQ--SGPASKTLKTVDEAEEFLSKK--DVVVIGFFKDLE-S 165 (493)
T ss_pred --CCCCCeEEEEecCCc----ceeccCcccHHHHHHHHHhc--cCCCceecccHHHHHhhccCC--ceEEEEEecccc-c
Confidence 779999999999974 47999999999999999999 689888887777788888762 333344554332 2
Q ss_pred chHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCC--CCEEEEEcCCCCCceeecCCCChhHHHHHHHHhhccccc
Q 005374 292 ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVES--APAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQGLY 369 (699)
Q Consensus 292 ~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~--~PtIvlfk~~~~~pv~y~g~~~~~~L~~fi~~~~~~~~~ 369 (699)
....+...|..+++.+.|++.. ..++++++++.. .+.+++++.++...+.|.|+++.+.|.+||..+++|
T Consensus 166 ~~~~~~~~a~~l~~d~~F~~ts-----~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~~p--- 237 (493)
T KOG0190|consen 166 LAESFFDAASKLRDDYKFAHTS-----DSDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTPELLKKFIQENSLP--- 237 (493)
T ss_pred chHHHHHHHHhccccceeeccC-----cHhHHhhccCCCCCcceEEeccccccchhhcccccCHHHHHHHHHHhccc---
Confidence 2344445666678888998432 467899999853 566999999988888888999999999999999999
Q ss_pred cCCccccccccccchhhhhhccCcCCCCCCCCCccceEEEEEec-cCChhHHHHHHHHHHHHHhhccCcccccccccccc
Q 005374 370 FCGTCVSELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAG-RLSPELNKMRETIRRVQETLLSDDESNAADTDQSL 448 (699)
Q Consensus 370 ~~~~~~~~vp~Lts~s~~~~~c~~~~~~~~~~~~~~~lCvI~~~-~~~~~~~~~~~~lr~~a~~l~~~~~~~~~~~~~~~ 448 (699)
.+..+|.++.....- +. +.+-++++. ......+.+++.++++|+
T Consensus 238 -------lv~~ft~~~~~~~~~-------~~----~~~~~~~~~~~~~~~~e~~~~~~~~vAk----------------- 282 (493)
T KOG0190|consen 238 -------LVTEFTVANNAKIYS-------SF----VKLGLDFFVFFKCNRFEELRKKFEEVAK----------------- 282 (493)
T ss_pred -------ccceecccccceeec-------cc----cccceeEEeccccccHHHHHHHHHHHHH-----------------
Confidence 788887755543221 11 234555554 234478999999999999
Q ss_pred hhHHHhcCCCeEEEEEEeCcchHHHHHHhccccccccccCCcCCCCCCC-eEEEEEeecCCccccceeeccccccccccc
Q 005374 449 APAAVAFRNKRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVP-RLFIVRYKRNTTEDEAKIERKPRNIWDAMQ 527 (699)
Q Consensus 449 ~~~a~~~k~~~l~F~wvd~~~q~~f~~~fl~~~~~~~~c~~~~~~~~~p-~lvI~~~rr~~~~~~~~~~~~~~~~l~~~~ 527 (699)
+|+++ ++|+++|.+..+..+++|-..+.. .| ++++. +.+. .+|. + +
T Consensus 283 -----~f~~~-l~Fi~~d~e~~~~~~~~~Gl~~~~------------~~~~~v~~----~~~~--~Ky~------~---~ 329 (493)
T KOG0190|consen 283 -----KFKGK-LRFILIDPESFARVLEFFGLEEEQ------------LPIRAVIL----NEDG--SKYP------L---E 329 (493)
T ss_pred -----hcccc-eEEEEEChHHhhHHHHhcCccccc------------CCeeEEee----cccc--cccc------C---c
Confidence 89985 999999998888888888333211 14 55555 6655 5777 4 4
Q ss_pred cccCCccccchhccCCCCChHHHHHHHHHHhcCCCCCCCCcccCCCCCCCC
Q 005374 528 EQEVDPASQLVVRYNGSDEIPQIAKWVSEIIQDGDSKDLPFYRAKTPELVP 578 (699)
Q Consensus 528 ~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~g~~~~l~~~~~~~p~l~~ 578 (699)
+++. +...|+.|+.+++. +.....++++++|+=++
T Consensus 330 ~e~~--------------~~~~ie~f~~~~l~--Gk~~p~~kSqpiPe~~~ 364 (493)
T KOG0190|consen 330 EEEL--------------DQENIESFVKDFLD--GKVKPHLKSQPIPEDND 364 (493)
T ss_pred cccc--------------cHHHHHHHHHHHhc--CccccccccCCCCcccc
Confidence 4433 22469999999998 55566668999998776
No 2
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.97 E-value=4e-29 Score=252.75 Aligned_cols=276 Identities=18% Similarity=0.277 Sum_probs=191.3
Q ss_pred cCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhccc---ceeeeeccchhhhhHHHHhCCCCcccccccccEEEEcCCCC
Q 005374 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA---NTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGC 227 (699)
Q Consensus 151 ~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~---~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~f~~g~ 227 (699)
.++..|+|.||||||+||+++.|+|.++.-+|+..+ +||++||+ ....+|++++ |+|||||++|+++.
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT---~f~aiAnefg------iqGYPTIk~~kgd~ 111 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDAT---RFPAIANEFG------IQGYPTIKFFKGDH 111 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccc---cchhhHhhhc------cCCCceEEEecCCe
Confidence 467899999999999999999999999999998754 99999999 4555999999 77999999999984
Q ss_pred CCCCccccccCCcCHHHHHHHHHHHhccCCcceecccchhhhhhhhhcCCCcEEEEEEcCCCCCchHHHHH---HHHhcc
Q 005374 228 KSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQ---ISRNYW 304 (699)
Q Consensus 228 ~~~~~~~~Y~G~rs~~~Iv~fi~k~v~~lP~~~~it~~~~~~~Fl~~~~~~~v~vl~f~~~~~~~~~~~~~---~A~~~~ 304 (699)
..+|.|+|+.++|++|+.+. +.|-+..++. ++ ..|..-...+.|.++||+... .|.+.+ +|.
T Consensus 112 -----a~dYRG~R~Kd~iieFAhR~--a~aiI~pi~e-nQ-~~fehlq~Rhq~ffVf~Gtge---~PL~d~fidAAS--- 176 (468)
T KOG4277|consen 112 -----AIDYRGGREKDAIIEFAHRC--AAAIIEPINE-NQ-IEFEHLQARHQPFFVFFGTGE---GPLFDAFIDAAS--- 176 (468)
T ss_pred -----eeecCCCccHHHHHHHHHhc--ccceeeecCh-hH-HHHHHHhhccCceEEEEeCCC---CcHHHHHHHHhh---
Confidence 47999999999999999987 3443333432 22 222222234668899997432 333322 332
Q ss_pred CCceEEEEEccccccHhHHhhcCC-CCCCEEEEEcCCCCCceeecCCCChhHHHHHHHHhhccccccCCccccccccccc
Q 005374 305 AYASFAFVLWREEESSIWWNTFEV-ESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQGLYFCGTCVSELPQLRS 383 (699)
Q Consensus 305 ~~~~Fg~V~~~~~~s~~l~~kf~V-~~~PtIvlfk~~~~~pv~y~g~~~~~~L~~fi~~~~~~~~~~~~~~~~~vp~Lts 383 (699)
+.+..+..... +++++-.++- +..|++.+||+..- .+.+. .+.++|..||+..++| .+-..++
T Consensus 177 e~~~~a~FfSa---seeVaPe~~~~kempaV~VFKDetf-~i~de--~dd~dLseWinRERf~----------~fLa~dg 240 (468)
T KOG4277|consen 177 EKFSVARFFSA---SEEVAPEENDAKEMPAVAVFKDETF-EIEDE--GDDEDLSEWINRERFP----------GFLAADG 240 (468)
T ss_pred hheeeeeeecc---ccccCCcccchhhccceEEEcccee-EEEec--CchhHHHHHHhHhhcc----------chhhccc
Confidence 23444444322 3345555443 34799999998532 12223 3567899999999999 5666666
Q ss_pred hhhhhhccCcCCCCCCCCCccceEEEEEec------cCChhHHHHHHHHHHHHHhhccCcccccccccccchhHHHhcCC
Q 005374 384 VTSMELGCDARGYSRAGSDTTIWYCVILAG------RLSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRN 457 (699)
Q Consensus 384 ~s~~~~~c~~~~~~~~~~~~~~~lCvI~~~------~~~~~~~~~~~~lr~~a~~l~~~~~~~~~~~~~~~~~~a~~~k~ 457 (699)
....+++. +|+ +.++++. +++.++.++..+..++|+.|+..-+ |-
T Consensus 241 flL~EiG~-------sGK-----LVaLaVidEkhk~nns~eh~~~~ki~eEaakd~Rd~pd----------------fh- 291 (468)
T KOG4277|consen 241 FLLAEIGA-------SGK-----LVALAVIDEKHKFNNSSEHREFHKIAEEAAKDLRDHPD----------------FH- 291 (468)
T ss_pred chHHHhCc-------CCc-----eEEEEEeccccccCCcchhHHHHHHHHHHHHHHHhChh----------------hh-
Confidence 66666653 344 5555553 2455677778888888886653311 22
Q ss_pred CeEEEEEEeCcchHHHHHHhccccccccccCCcCCCCCCCeEEEEEeecCCccccceee
Q 005374 458 KRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIE 516 (699)
Q Consensus 458 ~~l~F~wvd~~~q~~f~~~fl~~~~~~~~c~~~~~~~~~p~lvI~~~rr~~~~~~~~~~ 516 (699)
.++.|+|+|+. ++++.+++.+- ..|+|||+ |.+. ..|-
T Consensus 292 ~dFQF~hlDGn---D~~nqilM~al------------s~P~l~i~----Ntsn--qeYf 329 (468)
T KOG4277|consen 292 NDFQFAHLDGN---DLANQILMAAL------------SEPHLFIF----NTSN--QEYF 329 (468)
T ss_pred hhceeeccchh---HHHHHHHHHhh------------cCCeEEEE----ecCc--hhee
Confidence 35999999997 77777766653 24999999 8876 4554
No 3
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.96 E-value=1.7e-27 Score=267.01 Aligned_cols=333 Identities=16% Similarity=0.210 Sum_probs=238.0
Q ss_pred eEEEecCCCCcccccCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcc---cceeeeeccchhhhhHHHHhCCCCcccc
Q 005374 137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRLATHLAERKPIGQIFF 213 (699)
Q Consensus 137 ~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~---~~va~Vdc~~~~~~~~L~~k~~i~~~f~ 213 (699)
.|.+||.++|+..+.++++++|.||||||++|+++.|.|.++|+.+++. +.+++|||+++.. +|++++
T Consensus 2 ~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~---l~~~~~------ 72 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKD---LAQKYG------ 72 (462)
T ss_pred CceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHH---HHHhCC------
Confidence 4789999999999988899999999999999999999999999999764 5899999996654 999998
Q ss_pred cccccEEEEcCCCCCCCCccccccCCcCHHHHHHHHHHHhccCCcceecccchhhhhhhhhcCCCcEEEEEEcCCCCCch
Q 005374 214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERAS 293 (699)
Q Consensus 214 V~gyPTl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~v~~lP~~~~it~~~~~~~Fl~~~~~~~v~vl~f~~~~~~~~ 293 (699)
|++|||+++|.+|... ...|.|.++.+.|++|+.+.+ .|....+++.+.++.|+... ....++++.+..+...
T Consensus 73 i~~~Pt~~~~~~g~~~---~~~~~g~~~~~~l~~~i~~~~--~~~~~~i~~~~~~~~~~~~~--~~~vi~~~~~~~~~~~ 145 (462)
T TIGR01130 73 VSGYPTLKIFRNGEDS---VSDYNGPRDADGIVKYMKKQS--GPAVKEIETVADLEAFLADD--DVVVIGFFKDLDSELN 145 (462)
T ss_pred CccccEEEEEeCCccc---eeEecCCCCHHHHHHHHHHhc--CCCceeecCHHHHHHHHhcC--CcEEEEEECCCCcHHH
Confidence 6799999999988641 368999999999999999883 35555566656678888752 2333444444333445
Q ss_pred HHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCCCc--eeecCCC--ChhHHHHHHHHhhccccc
Q 005374 294 PFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKP--VVYYGSF--NNSRLSEVMEQNKLQGLY 369 (699)
Q Consensus 294 ~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~~p--v~y~g~~--~~~~L~~fi~~~~~~~~~ 369 (699)
..+..+|..+.+...| ++... ...+.+++++. .+++++|+..+... ..|.|+. +.+.|.+||..+++|
T Consensus 146 ~~~~~~a~~~~~~~~~-~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p--- 217 (462)
T TIGR01130 146 DTFLSVAEKLRDVYFF-FAHSS---DVAAFAKLGAF-PDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLP--- 217 (462)
T ss_pred HHHHHHHHHhhhccce-EEecC---CHHHHhhcCCC-CCcEEEecccccccccccccCcccCCHHHHHHHHHHcCCC---
Confidence 5666788877766553 22211 24577788765 46777776544333 3567765 447999999999999
Q ss_pred cCCccccccccccchhhhhhccCcCCCCCCCCCccceEEEEEeccC--ChhHHHHHHHHHHHHHhhccCccccccccccc
Q 005374 370 FCGTCVSELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRL--SPELNKMRETIRRVQETLLSDDESNAADTDQS 447 (699)
Q Consensus 370 ~~~~~~~~vp~Lts~s~~~~~c~~~~~~~~~~~~~~~lCvI~~~~~--~~~~~~~~~~lr~~a~~l~~~~~~~~~~~~~~ 447 (699)
.+++++..+.....- . + .++++++... .....++.+.++.+|+
T Consensus 218 -------~v~~~~~~~~~~~~~-~------~-----~~~~l~~~~~~~~~~~~~~~~~~~~~a~---------------- 262 (462)
T TIGR01130 218 -------LVGEFTQETAAKYFE-S------G-----PLVVLYYNVDESLDPFEELRNRFLEAAK---------------- 262 (462)
T ss_pred -------ceEeeCCcchhhHhC-C------C-----CceeEEEEecCCchHHHHHHHHHHHHHH----------------
Confidence 899998776644331 1 1 2455554322 1224677788888887
Q ss_pred chhHHHhcCCCeEEEEEEeCcchHHHHHHhccccccccccCCcCCCCCCCeEEEEEeecCCccccceeeccccccccccc
Q 005374 448 LAPAAVAFRNKRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQ 527 (699)
Q Consensus 448 ~~~~a~~~k~~~l~F~wvd~~~q~~f~~~fl~~~~~~~~c~~~~~~~~~p~lvI~~~rr~~~~~~~~~~~~~~~~l~~~~ 527 (699)
+|++..+.|+|+|......+++.|.... .+.|.++|+ +.+.. .+|. + .
T Consensus 263 ------~~~~~~i~f~~~d~~~~~~~~~~~~~~~------------~~~P~~vi~----~~~~~-~~y~------~---~ 310 (462)
T TIGR01130 263 ------KFRGKFVNFAVADEEDFGRELEYFGLKA------------EKFPAVAIQ----DLEGN-KKYP------M---D 310 (462)
T ss_pred ------HCCCCeEEEEEecHHHhHHHHHHcCCCc------------cCCceEEEE----eCCcc-cccC------C---C
Confidence 7886579999999998888888773322 124999998 55441 3544 3 2
Q ss_pred cccCCccccchhccCCCCChHHHHHHHHHHhcCCCCCCCCcccCCCCCC
Q 005374 528 EQEVDPASQLVVRYNGSDEIPQIAKWVSEIIQDGDSKDLPFYRAKTPEL 576 (699)
Q Consensus 528 ~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~g~~~~l~~~~~~~p~l 576 (699)
++ ..+.+.|..||+++++ ++..+.+.++++|+-
T Consensus 311 ~~--------------~~~~~~i~~fi~~~~~--g~~~~~~~se~~p~~ 343 (462)
T TIGR01130 311 QE--------------EFSSENLEAFVKDFLD--GKLKPYLKSEPIPED 343 (462)
T ss_pred cC--------------CCCHHHHHHHHHHHhc--CCCCeeeccCCCCcc
Confidence 21 2256899999999998 444555567777764
No 4
>PTZ00102 disulphide isomerase; Provisional
Probab=99.94 E-value=3.3e-25 Score=250.40 Aligned_cols=318 Identities=16% Similarity=0.230 Sum_probs=223.3
Q ss_pred eEEEecCCCCcccccCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhc---ccceeeeeccchhhhhHHHHhCCCCcccc
Q 005374 137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQIFF 213 (699)
Q Consensus 137 ~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g---~~~va~Vdc~~~~~~~~L~~k~~i~~~f~ 213 (699)
.|..|+..+|+..+..++.+||.||||||+||+++.|+|+++|+.++. .+.++.|||+++.. +|++++
T Consensus 33 ~v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~---l~~~~~------ 103 (477)
T PTZ00102 33 HVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEME---LAQEFG------ 103 (477)
T ss_pred CcEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHH---HHHhcC------
Confidence 468999999999998888999999999999999999999999998864 35899999996554 999998
Q ss_pred cccccEEEEcCCCCCCCCccccccCCcCHHHHHHHHHHHhccCCcceecccchhhhhhhhhcCCCcEEEE-EEcCCCCCc
Q 005374 214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVI-FFSKTGERA 292 (699)
Q Consensus 214 V~gyPTl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~v~~lP~~~~it~~~~~~~Fl~~~~~~~v~vl-~f~~~~~~~ 292 (699)
|++|||+++|.+|.. ..|.|.+++++|++|+.+. ..|....+++......+... ..+.++ .+.+..+..
T Consensus 104 i~~~Pt~~~~~~g~~-----~~y~g~~~~~~l~~~l~~~--~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 173 (477)
T PTZ00102 104 VRGYPTIKFFNKGNP-----VNYSGGRTADGIVSWIKKL--TGPAVTEVESASEIKLIAKK---IFVAFYGEYTSKDSEL 173 (477)
T ss_pred CCcccEEEEEECCce-----EEecCCCCHHHHHHHHHHh--hCCCceeecCHHHHHHhhcc---CcEEEEEEeccCCcHH
Confidence 679999999999853 4899999999999999998 35666666654434443322 224333 454433333
Q ss_pred hHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCCCceeecCCCChhHHHHHHHHhhccccccCC
Q 005374 293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQGLYFCG 372 (699)
Q Consensus 293 ~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~~~~~~L~~fi~~~~~~~~~~~~ 372 (699)
...+..+|..+++...|+.+. . ...+.+++++..+.....+. ..+.++|.+||+.+.+|
T Consensus 174 ~~~f~~~a~~~~~~~~F~~~~--~------------~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~fI~~~~~P------ 232 (477)
T PTZ00102 174 YKKFEEVADKHREHAKFFVKK--H------------EGKNKIYVLHKDEEGVELFM-GKTKEELEEFVSTESFP------ 232 (477)
T ss_pred HHHHHHHHHhccccceEEEEc--C------------CCCCcEEEEecCCCCcccCC-CCCHHHHHHHHHHcCCC------
Confidence 444556888888887776542 1 02467888887654443334 45889999999999999
Q ss_pred ccccccccccchhhhhhccCcCCCCCCCCCccceEEEEEeccCChhHHHHHHHHHHHHHhhccCcccccccccccchhHH
Q 005374 373 TCVSELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAA 452 (699)
Q Consensus 373 ~~~~~vp~Lts~s~~~~~c~~~~~~~~~~~~~~~lCvI~~~~~~~~~~~~~~~lr~~a~~l~~~~~~~~~~~~~~~~~~a 452 (699)
.+.+++..++.... .++ ..++++....++.+++.+.++++|+
T Consensus 233 ----~~~~~~~~~~~~~~-------~~~------~~~~~~~~~~~~~~~~~~~~~~~A~--------------------- 274 (477)
T PTZ00102 233 ----LFAEINAENYRRYI-------SSG------KDLVWFCGTTEDYDKYKSVVRKVAR--------------------- 274 (477)
T ss_pred ----ceeecCccchHHHh-------cCC------ccEEEEecCHHHHHHHHHHHHHHHH---------------------
Confidence 89999888775433 122 2333332333455677888888888
Q ss_pred HhcCCCeEEEEEEeCcchHH-HHHHhccccccccccCCcCCCCCCCeEEEEEeecCCccccceeeccccccccccccccC
Q 005374 453 VAFRNKRLTFAWLDGEAQDR-YCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEV 531 (699)
Q Consensus 453 ~~~k~~~l~F~wvd~~~q~~-f~~~fl~~~~~~~~c~~~~~~~~~p~lvI~~~rr~~~~~~~~~~~~~~~~l~~~~~~~~ 531 (699)
+|+++ +.|+|+|+..... +++.|...+ .|.+++. +.. .+|. + .++.
T Consensus 275 -~~~~~-~~f~~vd~~~~~~~~~~~~gi~~--------------~P~~~i~----~~~---~~y~------~---~~~~- 321 (477)
T PTZ00102 275 -KLREK-YAFVWLDTEQFGSHAKEHLLIEE--------------FPGLAYQ----SPA---GRYL------L---PPAK- 321 (477)
T ss_pred -hccCc-eEEEEEechhcchhHHHhcCccc--------------CceEEEE----cCC---cccC------C---Cccc-
Confidence 78865 8999999986554 555552221 3887776 322 2444 2 2210
Q ss_pred CccccchhccCCCCChHHHHHHHHHHhcCCCCCCCCcccCCCCCCC
Q 005374 532 DPASQLVVRYNGSDEIPQIAKWVSEIIQDGDSKDLPFYRAKTPELV 577 (699)
Q Consensus 532 ~~~~~~~~~~~g~~~~~~i~~~i~~~~~~g~~~~l~~~~~~~p~l~ 577 (699)
.+..+.+.|..||.+++. ++....+.++++|+-.
T Consensus 322 ----------~~~~~~~~l~~Fv~~~~~--gk~~~~~~se~~p~~~ 355 (477)
T PTZ00102 322 ----------ESFDSVEALIEFFKDVEA--GKVEKSIKSEPIPEEQ 355 (477)
T ss_pred ----------cccCCHHHHHHHHHHHhC--CCCCcccccCCCCCCC
Confidence 012256899999999998 5555555677777643
No 5
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=8.5e-24 Score=220.02 Aligned_cols=147 Identities=17% Similarity=0.111 Sum_probs=104.5
Q ss_pred CCccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHHcCChhhhcccCcCCchhhhhhh--
Q 005374 34 SFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHIL-- 108 (699)
Q Consensus 34 ~~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~---~~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~~~~~~-- 108 (699)
..++|||+||||+++|+..|||+||||||++||||+|| .+.++|++|+.||+||+||++|+.||+||+++..+.+
T Consensus 13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~~~ 92 (336)
T KOG0713|consen 13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDENKD 92 (336)
T ss_pred hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcccccc
Confidence 34789999999999999999999999999999999998 4778899999999999999999999999999887542
Q ss_pred -hhhccccCccccccccCCCCCCCCCCcceEEEecCCCCcccccCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccc
Q 005374 109 -EKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIAN 187 (699)
Q Consensus 109 -~~~~~~~~~~~f~~~~f~f~~~~d~~~~~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~ 187 (699)
+..+..++.+++...+|++..++.. +... .....|++.++.-.|.||-...+.|+...+-.... .
T Consensus 93 ~~~g~~~~~~f~~~f~dfg~~~~g~~-------~~e~------~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~-~ 158 (336)
T KOG0713|consen 93 GEGGGGGNDIFSAFFGDFGVTVGGNP-------LEEA------LPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKP-A 158 (336)
T ss_pred cccCCcccchHHHhhcccccccCCCc-------ccCC------CCCCceEEeehhhchhhhhcccHHHHHhccCceee-c
Confidence 1111113444444334544333311 1111 23455777777778888888887777766544332 2
Q ss_pred eeeeecc
Q 005374 188 TGMVELG 194 (699)
Q Consensus 188 va~Vdc~ 194 (699)
.++.+|.
T Consensus 159 ~g~~~~~ 165 (336)
T KOG0713|consen 159 PGTRKCN 165 (336)
T ss_pred CcccccC
Confidence 3344444
No 6
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.83 E-value=9.2e-20 Score=186.01 Aligned_cols=283 Identities=15% Similarity=0.202 Sum_probs=185.0
Q ss_pred ecCCCCcccccCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhc-----ccceeeeeccchhhhhHHHHhCCCCcccccc
Q 005374 141 VTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG-----IANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (699)
Q Consensus 141 Lt~~nF~~~v~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g-----~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~ 215 (699)
||..|++..+++.+.++|.|||+||..++.|.|+|+++|..++. .+..|+|||+ .+..|+.+|. |+
T Consensus 1 lt~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd---~e~~ia~ky~------I~ 71 (375)
T KOG0912|consen 1 LTSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCD---KEDDIADKYH------IN 71 (375)
T ss_pred CccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccc---hhhHHhhhhc------cc
Confidence 46789999999999999999999999999999999999999853 4479999999 5556999988 77
Q ss_pred cccEEEEcCCCCCCCCccccccCCcCHHHHHHHHHHHhccCCcceecccchhhhhhhhhc-CCCcEEEEEEcCCCCCchH
Q 005374 216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKT-GPHKVKVIFFSKTGERASP 294 (699)
Q Consensus 216 gyPTl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~v~~lP~~~~it~~~~~~~Fl~~~-~~~~v~vl~f~~~~~~~~~ 294 (699)
.|||+++|++|... ..+|.|.|++++|.+|+.+++. -|-. ...+ ++++-+-. +.....+.+|.+++.....
T Consensus 72 KyPTlKvfrnG~~~---~rEYRg~RsVeaL~efi~kq~s-~~i~-Ef~s---l~~l~n~~~p~K~~vIgyF~~kdspey~ 143 (375)
T KOG0912|consen 72 KYPTLKVFRNGEMM---KREYRGQRSVEALIEFIEKQLS-DPIN-EFES---LDQLQNLDIPSKRTVIGYFPSKDSPEYD 143 (375)
T ss_pred cCceeeeeeccchh---hhhhccchhHHHHHHHHHHHhc-cHHH-HHHh---HHHHHhhhccccceEEEEeccCCCchHH
Confidence 99999999999753 4689999999999999999843 2211 1112 22222222 2234556677644333344
Q ss_pred HHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCCCce-eecCCCCh-hHHHHHHHHhhccccccCC
Q 005374 295 FVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPV-VYYGSFNN-SRLSEVMEQNKLQGLYFCG 372 (699)
Q Consensus 295 ~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~~pv-~y~g~~~~-~~L~~fi~~~~~~~~~~~~ 372 (699)
.++.+|.-+++...|.. ..++ +.....-.+.+ +++|.+....+. .|.|.++. +.++.||..--.|
T Consensus 144 ~~~kva~~lr~dc~f~V-~~gD-----~~~~~~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcvp------ 210 (375)
T KOG0912|consen 144 NLRKVASLLRDDCVFLV-GFGD-----LLKPHEPPGKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCVP------ 210 (375)
T ss_pred HHHHHHHHHhhccEEEe-eccc-----cccCCCCCCCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhcchh------
Confidence 55668888888877643 2222 11111111222 555555433332 58998854 6789999887666
Q ss_pred ccccccccccchhhhhhccCcCCCCCCCCCccceEEEEEeccCChhHHHHHHHHHHHHHhhccCcccccccccccchhHH
Q 005374 373 TCVSELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAA 452 (699)
Q Consensus 373 ~~~~~vp~Lts~s~~~~~c~~~~~~~~~~~~~~~lCvI~~~~~~~~~~~~~~~lr~~a~~l~~~~~~~~~~~~~~~~~~a 452 (699)
.|-++|-++.-++.- -|. ++.+++-.+.+.+.+ ..--..++++|-..
T Consensus 211 ----LVREiTFeN~EELtE-------EGl----PflILf~~kdD~~s~--k~F~~aI~ReL~~e---------------- 257 (375)
T KOG0912|consen 211 ----LVREITFENAEELTE-------EGL----PFLILFRKKDDKESE--KIFKNAIARELDDE---------------- 257 (375)
T ss_pred ----hhhhhhhccHHHHhh-------cCC----ceEEEEecCCcccHH--HHHHHHHHHHhhhh----------------
Confidence 899999988866542 233 454444433333322 22223344433221
Q ss_pred HhcCCCeEEEEEEeCcchHHHHHHhccccccccccCCcCCCCCCCeEEEE
Q 005374 453 VAFRNKRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIV 502 (699)
Q Consensus 453 ~~~k~~~l~F~wvd~~~q~~f~~~fl~~~~~~~~c~~~~~~~~~p~lvI~ 502 (699)
+ ..+.|+..||..-+.=+.-+-++ .+|+|-|.|=
T Consensus 258 ---~-~~in~l~ADG~~f~hpL~HlgKs------------~~DLPviaID 291 (375)
T KOG0912|consen 258 ---T-LAINFLTADGKVFKHPLRHLGKS------------PDDLPVIAID 291 (375)
T ss_pred ---h-hccceeecCcceecchHHHhCCC------------cccCcEEEee
Confidence 1 23899999998766666655332 4567877773
No 7
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.83 E-value=5.2e-21 Score=175.01 Aligned_cols=101 Identities=8% Similarity=-0.015 Sum_probs=90.5
Q ss_pred ceEEEecCCCCccc---ccCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHH-HhCCCCcc
Q 005374 136 HAFNVVTSEDFPSI---FHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLA-ERKPIGQI 211 (699)
Q Consensus 136 ~~V~~Lt~~nF~~~---v~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~-~k~~i~~~ 211 (699)
+.|++||.+||++. +.+++++||.||||||+||+.+.|.|+++|+.+++.+.|++|||+++.. +| ++++
T Consensus 9 ~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~---l~~~~~~---- 81 (113)
T cd03006 9 SPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQG---KCRKQKH---- 81 (113)
T ss_pred CCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChH---HHHHhcC----
Confidence 36899999999987 4789999999999999999999999999999999888999999996654 88 5788
Q ss_pred cccccccEEEEcCCCCCCCCccccccCCcCHHHHHHHH
Q 005374 212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (699)
Q Consensus 212 f~V~gyPTl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi 249 (699)
|++||||++|++|.. +..|.|.++.+.|+.|+
T Consensus 82 --I~~~PTl~lf~~g~~----~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 82 --FFYFPVIHLYYRSRG----PIEYKGPMRAPYMEKFV 113 (113)
T ss_pred --CcccCEEEEEECCcc----ceEEeCCCCHHHHHhhC
Confidence 779999999998864 47899999999999984
No 8
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=3.7e-20 Score=198.01 Aligned_cols=70 Identities=30% Similarity=0.517 Sum_probs=66.2
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHHcCChhhhcccCcCCchhhh
Q 005374 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (699)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~---~~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~~~ 105 (699)
..|||+||||+++||.+|||+|||+||++||||+|+ .++++|++|++|||||+||++|+.||+||+.+..
T Consensus 3 ~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~ 75 (371)
T COG0484 3 KRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK 75 (371)
T ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence 569999999999999999999999999999999988 4788999999999999999999999999998854
No 9
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=7.6e-19 Score=193.75 Aligned_cols=211 Identities=17% Similarity=0.311 Sum_probs=157.8
Q ss_pred EEecCCCCcccc-cCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccc
Q 005374 139 NVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL 217 (699)
Q Consensus 139 ~~Lt~~nF~~~v-~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gy 217 (699)
..++..+|...+ ....+|+|+||+|||+||+++.|+|++++..|++.+.+|.|||++++. +|++++ |+||
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~---~~~~y~------i~gf 102 (383)
T KOG0191|consen 32 SELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKD---LCEKYG------IQGF 102 (383)
T ss_pred hhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHH---HHHhcC------CccC
Confidence 445555665555 789999999999999999999999999999999988999999996555 999998 6799
Q ss_pred cEEEEcCCCCCCCCccccccCCcCHHHHHHHHHHHhccCC-----c-ceecccchhhhhhhhhcCCCcEEEEEEcC---C
Q 005374 218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLP-----R-IFYYTKESMGKNFLAKTGPHKVKVIFFSK---T 288 (699)
Q Consensus 218 PTl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~v~~lP-----~-~~~it~~~~~~~Fl~~~~~~~v~vl~f~~---~ 288 (699)
|||++|.+| . .+..|.|.++++.+.+|+.+.+.... . +..++..+ +..+... .++.+.|.||.. +
T Consensus 103 Ptl~~f~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~~~~-~~~~~lv~f~aPwc~~ 176 (383)
T KOG0191|consen 103 PTLKVFRPG-K---KPIDYSGPRNAESLAEFLIKELEPSVKKLVEGEVFELTKDN-FDETVKD-SDADWLVEFYAPWCGH 176 (383)
T ss_pred cEEEEEcCC-C---ceeeccCcccHHHHHHHHHHhhccccccccCCceEEccccc-hhhhhhc-cCcceEEEEeccccHH
Confidence 999999999 3 46899999999999999988743221 1 11122222 2332222 224455556543 4
Q ss_pred CCCchHHHHHHHHhcc--CCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCCCceeecCCCChhHHHHHHHHhhcc
Q 005374 289 GERASPFVRQISRNYW--AYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQ 366 (699)
Q Consensus 289 ~~~~~~~~~~~A~~~~--~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~~~~~~L~~fi~~~~~~ 366 (699)
+....+.+..+|..+. ..+.++.+... ....++++++|..+|++++|++++.....|.|..+.+.|..|++...-.
T Consensus 177 ck~l~~~~~~~a~~~~~~~~v~~~~~d~~--~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 177 CKKLAPEWEKLAKLLKSKENVELGKIDAT--VHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERR 254 (383)
T ss_pred hhhcChHHHHHHHHhccCcceEEEeeccc--hHHHHhhhhcccCCceEEEecCCCcccccccccccHHHHHHHHHhhcCC
Confidence 5556788888888764 55666666432 2467999999999999999998766234467888999999999876555
No 10
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.79 E-value=6.5e-20 Score=163.80 Aligned_cols=100 Identities=23% Similarity=0.532 Sum_probs=90.4
Q ss_pred eEEEecCCCCcccccCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCccccccc
Q 005374 137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (699)
Q Consensus 137 ~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~g 216 (699)
.|.+||.++|+..+.++++|+|.||||||++|+++.|.|+++|+.+++.+.|++|||++++. +|++++ |++
T Consensus 2 ~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~---~~~~~~------v~~ 72 (101)
T cd03003 2 EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM---LCRSQG------VNS 72 (101)
T ss_pred CeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHH---HHHHcC------CCc
Confidence 36889999999999877999999999999999999999999999999888999999996654 999998 779
Q ss_pred ccEEEEcCCCCCCCCccccccCCcCHHHHHHHH
Q 005374 217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (699)
Q Consensus 217 yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi 249 (699)
|||+++|++|.. ...|.|.++.++|++|+
T Consensus 73 ~Pt~~~~~~g~~----~~~~~G~~~~~~l~~f~ 101 (101)
T cd03003 73 YPSLYVFPSGMN----PEKYYGDRSKESLVKFA 101 (101)
T ss_pred cCEEEEEcCCCC----cccCCCCCCHHHHHhhC
Confidence 999999998864 46899999999999884
No 11
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.79 E-value=7.6e-20 Score=167.09 Aligned_cols=103 Identities=16% Similarity=0.154 Sum_probs=86.9
Q ss_pred EEEecCCCCcccccCCCcEEEEEec--cCCC---CCCCcchHHHHHHHHhhcccceeeeeccch--hhhhHHHHhCCCCc
Q 005374 138 FNVVTSEDFPSIFHDSKPWLIQVYS--DGSY---LCGQFSGAWKTIAALLEGIANTGMVELGDI--RLATHLAERKPIGQ 210 (699)
Q Consensus 138 V~~Lt~~nF~~~v~~~~~~lV~FYa--pwC~---hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~--~~~~~L~~k~~i~~ 210 (699)
+++||..||++.|.+++.+||+||| |||+ ||++|+|+|.++|.. +.||+|||++. ..+..||++|+
T Consensus 3 ~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~----v~lakVd~~d~~~~~~~~L~~~y~--- 75 (116)
T cd03007 3 CVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD----LLVAEVGIKDYGEKLNMELGERYK--- 75 (116)
T ss_pred eeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc----eEEEEEecccccchhhHHHHHHhC---
Confidence 6899999999999999999999999 9999 888888888888764 57999999421 12345999999
Q ss_pred ccccc--cccEEEEcCCCCCCCCccccccCC-cCHHHHHHHHHHH
Q 005374 211 IFFRR--GLPSLVAFPPGCKSSDCMTRFEGE-LSVDAVTDWFATA 252 (699)
Q Consensus 211 ~f~V~--gyPTl~~f~~g~~~~~~~~~Y~G~-rs~~~Iv~fi~k~ 252 (699)
|+ +||||++|++|... .+..|+|+ |++++|++|+.++
T Consensus 76 ---I~~~gyPTl~lF~~g~~~--~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 76 ---LDKESYPVIYLFHGGDFE--NPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred ---CCcCCCCEEEEEeCCCcC--CCccCCCCcccHHHHHHHHHhc
Confidence 77 99999999998422 35789997 9999999999875
No 12
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.79 E-value=7.9e-17 Score=168.03 Aligned_cols=332 Identities=15% Similarity=0.235 Sum_probs=205.4
Q ss_pred cCCCCCCCCCCcceEEEecCCCCcccccCCCcEEEEEeccCCCCCCCcchHH-------HHHHHHhhccc-ceeeeeccc
Q 005374 124 DLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAW-------KTIAALLEGIA-NTGMVELGD 195 (699)
Q Consensus 124 ~f~f~~~~d~~~~~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~hCk~l~p~~-------~~~A~~L~g~~-~va~Vdc~~ 195 (699)
+||-|.|. ..|..||.+||.+++...+...|.||.|--+ .+.....| +=+|+.|+..+ +||.||..+
T Consensus 26 efP~YDGk----DRVi~LneKNfk~~lKkyd~l~l~yh~p~~~-dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~K 100 (383)
T PF01216_consen 26 EFPEYDGK----DRVIDLNEKNFKRALKKYDVLVLYYHEPVES-DKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKK 100 (383)
T ss_dssp SSSS-SSS------CEEE-TTTHHHHHHH-SEEEEEEE--STS-SHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTT
T ss_pred CCccCCCc----cceEEcchhHHHHHHHhhcEEEEEEecCCcc-CHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHH
Confidence 35556553 2579999999999998889999999998743 33332333 33455565554 999999995
Q ss_pred hhhhhHHHHhCCCCcccccccccEEEEcCCCCCCCCccccccCCcCHHHHHHHHHHHhccCCcceecccchhhhhhhhhc
Q 005374 196 IRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKT 275 (699)
Q Consensus 196 ~~~~~~L~~k~~i~~~f~V~gyPTl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~v~~lP~~~~it~~~~~~~Fl~~~ 275 (699)
+ ..||+++| +...++|.+|..|. .++|.|.++++.|+.|+...+. -| +.+|++...+..|-.-
T Consensus 101 d---~klAKKLg------v~E~~SiyVfkd~~-----~IEydG~~saDtLVeFl~dl~e-dP-VeiIn~~~e~~~Fe~i- 163 (383)
T PF01216_consen 101 D---AKLAKKLG------VEEEGSIYVFKDGE-----VIEYDGERSADTLVEFLLDLLE-DP-VEIINNKHELKAFERI- 163 (383)
T ss_dssp T---HHHHHHHT--------STTEEEEEETTE-----EEEE-S--SHHHHHHHHHHHHS-SS-EEEE-SHHHHHHHHH--
T ss_pred H---HHHHHhcC------ccccCcEEEEECCc-----EEEecCccCHHHHHHHHHHhcc-cc-hhhhcChhhhhhhhhc-
Confidence 4 44999999 55999999999995 4799999999999999999843 34 4456655545556542
Q ss_pred CCCcEEEEEEcCCCCC-chHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCCCceeecCC-CCh
Q 005374 276 GPHKVKVIFFSKTGER-ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGS-FNN 353 (699)
Q Consensus 276 ~~~~v~vl~f~~~~~~-~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~-~~~ 353 (699)
+..++||.|.+..+. ..-.+..+|.+|...+.|..+. .+.++++++++ .-.|-+|.++..+|++..|. .+.
T Consensus 164 -ed~~klIGyFk~~~s~~yk~FeeAAe~F~p~IkFfAtf-----d~~vAk~L~lK-~nev~fyepF~~~pi~ip~~p~~e 236 (383)
T PF01216_consen 164 -EDDIKLIGYFKSEDSEHYKEFEEAAEHFQPYIKFFATF-----DKKVAKKLGLK-LNEVDFYEPFMDEPITIPGKPYTE 236 (383)
T ss_dssp --SS-EEEEE-SSTTSHHHHHHHHHHHHCTTTSEEEEE------SHHHHHHHT-S-TT-EEEE-TTSSSEEEESSSS--H
T ss_pred -ccceeEEEEeCCCCcHHHHHHHHHHHhhcCceeEEEEe-----cchhhhhcCcc-ccceeeeccccCCCccCCCCCCCH
Confidence 234778765433222 2223344888999999998774 46799999996 77899999999999988665 466
Q ss_pred hHHHHHHHHhhccccccCCccccccccccchhhhhhccCcCCCCCCCCCccceEEEEEec-cCChhHHHHHHHHHHHHHh
Q 005374 354 SRLSEVMEQNKLQGLYFCGTCVSELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAG-RLSPELNKMRETIRRVQET 432 (699)
Q Consensus 354 ~~L~~fi~~~~~~~~~~~~~~~~~vp~Lts~s~~~~~c~~~~~~~~~~~~~~~lCvI~~~-~~~~~~~~~~~~lr~~a~~ 432 (699)
..|.+||+.|+-| ++-+|+..++++.=-+. - . ...+|++. ..+++--++.+.++++|+
T Consensus 237 ~e~~~fi~~h~rp----------tlrkl~~~~m~e~Wedd-~---~------g~hIvaFaee~dpdG~efleilk~va~- 295 (383)
T PF01216_consen 237 EELVEFIEEHKRP----------TLRKLRPEDMFETWEDD-I---D------GIHIVAFAEEEDPDGFEFLEILKQVAR- 295 (383)
T ss_dssp HHHHHHHHHT-S-----------SEEE--GGGHHHHHHSS-S---S------SEEEEEE--TTSHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhchh----------HhhhCChhhhhhhhccc-C---C------CceEEEEecCCCCchHHHHHHHHHHHH-
Confidence 7899999999999 99999999998754322 0 1 24555554 455666677888888888
Q ss_pred hccCcccccccccccchhHHHhcCC-CeEEEEEEeCcchHHHHHHhccccccccccCCcCCCCCCCeEEEEEeecCCccc
Q 005374 433 LLSDDESNAADTDQSLAPAAVAFRN-KRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTED 511 (699)
Q Consensus 433 l~~~~~~~~~~~~~~~~~~a~~~k~-~~l~F~wvd~~~q~~f~~~fl~~~~~~~~c~~~~~~~~~p~lvI~~~rr~~~~~ 511 (699)
.+.. -.++++|||-+..+=.+.+.-..=.. +. ..|.|=|+ |.+..
T Consensus 296 ---------------------~nt~np~LsivwIDPD~fPllv~yWE~tF~I--------dl-~~PqIGvV----nvtda 341 (383)
T PF01216_consen 296 ---------------------DNTDNPDLSIVWIDPDDFPLLVPYWEKTFGI--------DL-SRPQIGVV----NVTDA 341 (383)
T ss_dssp ---------------------HCTT-TT--EEEE-GGG-HHHHHHHHHHHTT---------T-TS-EEEEE----ETTTS
T ss_pred ---------------------hcCcCCceeEEEECCCCCchhHHHHHhhcCc--------cc-cCCceeEE----ecccc
Confidence 3332 25999999998665555444222111 11 12899888 77652
Q ss_pred cceeeccccccccccccccCCccccchhccCCCCChHHHHHHHHHHhc
Q 005374 512 EAKIERKPRNIWDAMQEQEVDPASQLVVRYNGSDEIPQIAKWVSEIIQ 559 (699)
Q Consensus 512 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ 559 (699)
--- | ++..++++. -+.++++.||+.+|+
T Consensus 342 --dsv---W--~dm~d~~d~-------------pt~~~LedWieDVls 369 (383)
T PF01216_consen 342 --DSV---W--MDMDDDDDL-------------PTAEELEDWIEDVLS 369 (383)
T ss_dssp --EEE---E--C-STTTSS----------------HHHHHHHHHHHHC
T ss_pred --ccc---h--hccCCcccC-------------CcHHHHHHHHHHHhc
Confidence 211 6 411222211 156999999999997
No 13
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.76 E-value=7.1e-19 Score=159.15 Aligned_cols=101 Identities=20% Similarity=0.289 Sum_probs=89.3
Q ss_pred eEEEecCCCCcccccCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhc------ccceeeeeccchhhhhHHHHhCCCCc
Q 005374 137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG------IANTGMVELGDIRLATHLAERKPIGQ 210 (699)
Q Consensus 137 ~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g------~~~va~Vdc~~~~~~~~L~~k~~i~~ 210 (699)
.|.+||.+||+..+..+++++|.||||||++|+++.|.|+++|+.+++ .+.+++|||++++. +|++++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~---l~~~~~--- 75 (108)
T cd02996 2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESD---IADRYR--- 75 (108)
T ss_pred ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHH---HHHhCC---
Confidence 578999999999888888999999999999999999999999998753 35899999996654 999998
Q ss_pred ccccccccEEEEcCCCCCCCCccccccCCcCHHHHHHHH
Q 005374 211 IFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (699)
Q Consensus 211 ~f~V~gyPTl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi 249 (699)
|++|||+++|++|... ...|.|.++.++|++|+
T Consensus 76 ---v~~~Ptl~~~~~g~~~---~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 76 ---INKYPTLKLFRNGMMM---KREYRGQRSVEALAEFV 108 (108)
T ss_pred ---CCcCCEEEEEeCCcCc---ceecCCCCCHHHHHhhC
Confidence 6799999999998632 47899999999999985
No 14
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.76 E-value=6.7e-19 Score=157.86 Aligned_cols=101 Identities=21% Similarity=0.446 Sum_probs=89.3
Q ss_pred eEEEecCCCCcccc-cCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccc
Q 005374 137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (699)
Q Consensus 137 ~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~ 215 (699)
.|.+||.++|++.+ +++++++|.||||||++|+.+.|.|+++++.+.+.+.+++|||++++. +|++++ |+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~------i~ 72 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYES---LCQQAN------IR 72 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHH---HHHHcC------CC
Confidence 46889999999987 567799999999999999999999999999998888999999996554 999998 77
Q ss_pred cccEEEEcCCCCCCCCccccccCCcC-HHHHHHHH
Q 005374 216 GLPSLVAFPPGCKSSDCMTRFEGELS-VDAVTDWF 249 (699)
Q Consensus 216 gyPTl~~f~~g~~~~~~~~~Y~G~rs-~~~Iv~fi 249 (699)
++||+++|.+|.. ....|.|.++ .++|.+|+
T Consensus 73 ~~Pt~~~~~~g~~---~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 73 AYPTIRLYPGNAS---KYHSYNGWHRDADSILEFI 104 (104)
T ss_pred cccEEEEEcCCCC---CceEccCCCCCHHHHHhhC
Confidence 9999999999833 3578999987 99999885
No 15
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2e-18 Score=182.40 Aligned_cols=70 Identities=34% Similarity=0.583 Sum_probs=67.3
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChhhhcccCcCCchhhh
Q 005374 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (699)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~~~ 105 (699)
...+|+||||+++||.+|||+|||+|+++||||||+.+.++|++|.+||++|+||++|+.||+||+++..
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~ 72 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQ 72 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhc
Confidence 4689999999999999999999999999999999999999999999999999999999999999988864
No 16
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.72 E-value=3.2e-18 Score=151.86 Aligned_cols=102 Identities=17% Similarity=0.361 Sum_probs=92.8
Q ss_pred EEEecCCCCcccccC-CCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCccccccc
Q 005374 138 FNVVTSEDFPSIFHD-SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (699)
Q Consensus 138 V~~Lt~~nF~~~v~~-~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~g 216 (699)
|..+|.++|++.+.+ +++++|.||+|||++|+.+.|.|+++++.+.+.+.++.|||++++. +|++++ |++
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~---l~~~~~------v~~ 71 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKE---LCKKYG------VKS 71 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHH---HHHHTT------CSS
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccch---hhhccC------CCC
Confidence 578999999999964 9999999999999999999999999999999877999999996655 999999 669
Q ss_pred ccEEEEcCCCCCCCCccccccCCcCHHHHHHHHHHH
Q 005374 217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (699)
Q Consensus 217 yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~ 252 (699)
+||+++|.+|... ..|.|.++.+.|.+|++++
T Consensus 72 ~Pt~~~~~~g~~~----~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 72 VPTIIFFKNGKEV----KRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp SSEEEEEETTEEE----EEEESSSSHHHHHHHHHHH
T ss_pred CCEEEEEECCcEE----EEEECCCCHHHHHHHHHcC
Confidence 9999999999753 5899999999999999875
No 17
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.71 E-value=1.1e-17 Score=150.98 Aligned_cols=105 Identities=20% Similarity=0.391 Sum_probs=90.0
Q ss_pred EEEecCCCCcccc-cCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCccccccc
Q 005374 138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (699)
Q Consensus 138 V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~g 216 (699)
|.+|+.++|+..| +++.+++|.||||||++|+++.|.|+++|+.+.+...++.|||+++. ...+|++++ |++
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~-~~~~~~~~~------i~~ 74 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK-NKPLCGKYG------VQG 74 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc-cHHHHHHcC------CCc
Confidence 6789999999998 56788999999999999999999999999999887899999999621 234899998 679
Q ss_pred ccEEEEcCCCCCC-CCccccccCCcCHHHHHHHH
Q 005374 217 LPSLVAFPPGCKS-SDCMTRFEGELSVDAVTDWF 249 (699)
Q Consensus 217 yPTl~~f~~g~~~-~~~~~~Y~G~rs~~~Iv~fi 249 (699)
+||+++|.+|... ......|.|.++.+.|++|+
T Consensus 75 ~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 75 FPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred CCEEEEEeCCCcccccccccccCccCHHHHHHHh
Confidence 9999999988621 01357899999999999997
No 18
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.70 E-value=1.6e-17 Score=148.06 Aligned_cols=98 Identities=17% Similarity=0.380 Sum_probs=85.7
Q ss_pred eEEEecCCCCcccccCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcc-cceeeeeccchhhhhHHHHhCCCCcccccc
Q 005374 137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (699)
Q Consensus 137 ~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~-~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~ 215 (699)
.|.+||.++|+..+... |||.||||||++|+++.|.|+++++.+++. +.+++|||++++. +|++++ |+
T Consensus 2 ~v~~l~~~~f~~~~~~~--~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~---~~~~~~------i~ 70 (101)
T cd02994 2 NVVELTDSNWTLVLEGE--WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPG---LSGRFF------VT 70 (101)
T ss_pred ceEEcChhhHHHHhCCC--EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHh---HHHHcC------Cc
Confidence 57899999999887533 899999999999999999999999988754 5899999996654 899988 77
Q ss_pred cccEEEEcCCCCCCCCccccccCCcCHHHHHHHHH
Q 005374 216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFA 250 (699)
Q Consensus 216 gyPTl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi~ 250 (699)
++||+++|++|. ...|.|.++.++|++|+.
T Consensus 71 ~~Pt~~~~~~g~-----~~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 71 ALPTIYHAKDGV-----FRRYQGPRDKEDLISFIE 100 (101)
T ss_pred ccCEEEEeCCCC-----EEEecCCCCHHHHHHHHh
Confidence 999999998884 257899999999999985
No 19
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.67 E-value=6.1e-17 Score=144.25 Aligned_cols=100 Identities=23% Similarity=0.434 Sum_probs=89.1
Q ss_pred EEEecCCCCcccc-cCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCccccccc
Q 005374 138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (699)
Q Consensus 138 V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~g 216 (699)
|.+++.++|++.+ +.+.+++|.||+|||++|+++.|.|.++|+.+.+.+.++.+||+++.. +|++++ |++
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~---~~~~~~------i~~ 72 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQS---LAQQYG------VRG 72 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHH---HHHHCC------CCc
Confidence 6789999999988 556679999999999999999999999999998888999999996554 899988 779
Q ss_pred ccEEEEcCCCCCCCCccccccCCcCHHHHHHHH
Q 005374 217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (699)
Q Consensus 217 yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi 249 (699)
+||+++|.+|.. ....|.|+++.++|++|+
T Consensus 73 ~P~~~~~~~~~~---~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 73 FPTIKVFGAGKN---SPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred cCEEEEECCCCc---ceeecCCCCCHHHHHHHh
Confidence 999999998843 367899999999999997
No 20
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.67 E-value=3.8e-17 Score=148.39 Aligned_cols=102 Identities=14% Similarity=0.325 Sum_probs=86.8
Q ss_pred eEEEecCCCCccccc---CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcc-cceeeeeccchhhhhHHHHh-CCCCcc
Q 005374 137 AFNVVTSEDFPSIFH---DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAER-KPIGQI 211 (699)
Q Consensus 137 ~V~~Lt~~nF~~~v~---~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~-~~va~Vdc~~~~~~~~L~~k-~~i~~~ 211 (699)
.|.+++.++|+.++. +++++||.||+|||+||+++.|.|+++|+.+++. ..+++|||+.+ ...+|.+ ++
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~--~~~~~~~~~~---- 75 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE--QREFAKEELQ---- 75 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc--chhhHHhhcC----
Confidence 478999999998883 5789999999999999999999999999999875 58999999952 1237764 67
Q ss_pred cccccccEEEEcCCCCCCCCccccccCC-cCHHHHHHHH
Q 005374 212 FFRRGLPSLVAFPPGCKSSDCMTRFEGE-LSVDAVTDWF 249 (699)
Q Consensus 212 f~V~gyPTl~~f~~g~~~~~~~~~Y~G~-rs~~~Iv~fi 249 (699)
|+++||+++|.+|... ...|.|. |+.++|+.|+
T Consensus 76 --v~~~Pti~~f~~~~~~---~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 76 --LKSFPTILFFPKNSRQ---PIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred --CCcCCEEEEEcCCCCC---ceeccCCCCCHHHHHhhC
Confidence 7799999999988643 5789995 9999999985
No 21
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.67 E-value=1.3e-16 Score=147.26 Aligned_cols=102 Identities=13% Similarity=0.125 Sum_probs=86.0
Q ss_pred eEEEecCCCCcccc-cCCCcEEEEEeccCCC--CCC--CcchHHHHHHHHh--hcccceeeeeccchhhhhHHHHhCCCC
Q 005374 137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSY--LCG--QFSGAWKTIAALL--EGIANTGMVELGDIRLATHLAERKPIG 209 (699)
Q Consensus 137 ~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~--hCk--~l~p~~~~~A~~L--~g~~~va~Vdc~~~~~~~~L~~k~~i~ 209 (699)
.|.+||.+||++.| ++..+++|.|+++||+ ||+ .++|..+++|.++ ++.++|++|||++++. ||++|+
T Consensus 10 ~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~---La~~~~-- 84 (120)
T cd03065 10 RVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAK---VAKKLG-- 84 (120)
T ss_pred ceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHH---HHHHcC--
Confidence 57999999999999 5666777777777886 599 7788888887776 6667999999996655 999999
Q ss_pred cccccccccEEEEcCCCCCCCCccccccCCcCHHHHHHHHHHH
Q 005374 210 QIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (699)
Q Consensus 210 ~~f~V~gyPTl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~ 252 (699)
|+++|||++|++|.. ..|.|.++.+.|++|+.+.
T Consensus 85 ----I~~iPTl~lfk~G~~-----v~~~G~~~~~~l~~~l~~~ 118 (120)
T cd03065 85 ----LDEEDSIYVFKDDEV-----IEYDGEFAADTLVEFLLDL 118 (120)
T ss_pred ----CccccEEEEEECCEE-----EEeeCCCCHHHHHHHHHHH
Confidence 779999999999963 3599999999999999865
No 22
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=7.5e-17 Score=178.33 Aligned_cols=104 Identities=16% Similarity=0.346 Sum_probs=91.5
Q ss_pred ceEEEecCCCCcccc-cCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcc--cceeeeeccchhhhhHHHHhCCCCccc
Q 005374 136 HAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI--ANTGMVELGDIRLATHLAERKPIGQIF 212 (699)
Q Consensus 136 ~~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~--~~va~Vdc~~~~~~~~L~~k~~i~~~f 212 (699)
..|.+|..+||+..+ +.++-+||+|||||||||++++|+|+++|+.+++. +.||++|++.|... ...
T Consensus 366 ~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~~-----~~~----- 435 (493)
T KOG0190|consen 366 SPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDVP-----SLK----- 435 (493)
T ss_pred CCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccCc-----ccc-----
Confidence 469999999999998 78999999999999999999999999999999875 38999999966431 122
Q ss_pred ccccccEEEEcCCCCCCCCccccccCCcCHHHHHHHHHHH
Q 005374 213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (699)
Q Consensus 213 ~V~gyPTl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~ 252 (699)
|.+||||++|+.|.+. .+..|+|+|+.+++..|+.+.
T Consensus 436 -~~~fPTI~~~pag~k~--~pv~y~g~R~le~~~~fi~~~ 472 (493)
T KOG0190|consen 436 -VDGFPTILFFPAGHKS--NPVIYNGDRTLEDLKKFIKKS 472 (493)
T ss_pred -ccccceEEEecCCCCC--CCcccCCCcchHHHHhhhccC
Confidence 6799999999999765 688999999999999999876
No 23
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.65 E-value=9.1e-17 Score=142.87 Aligned_cols=98 Identities=17% Similarity=0.403 Sum_probs=85.9
Q ss_pred EEEecCCCCcccccCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhc---ccceeeeeccchhhhhHHHHhCCCCccccc
Q 005374 138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQIFFR 214 (699)
Q Consensus 138 V~~Lt~~nF~~~v~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g---~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V 214 (699)
|.+||.++|+..+.++ +++|.|||+||++|+.+.|.|+++|+.+++ .+.+++|||+++.. +|++++ |
T Consensus 2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~------v 71 (102)
T cd03005 2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRE---LCSEFQ------V 71 (102)
T ss_pred eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChh---hHhhcC------C
Confidence 5789999999999654 599999999999999999999999999987 46899999996554 899988 6
Q ss_pred ccccEEEEcCCCCCCCCccccccCCcCHHHHHHHH
Q 005374 215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (699)
Q Consensus 215 ~gyPTl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi 249 (699)
+++||+++|++|.. ...|.|.++.+.|.+|+
T Consensus 72 ~~~Pt~~~~~~g~~----~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 72 RGYPTLLLFKDGEK----VDKYKGTRDLDSLKEFV 102 (102)
T ss_pred CcCCEEEEEeCCCe----eeEeeCCCCHHHHHhhC
Confidence 79999999998863 36799999999999885
No 24
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.65 E-value=1.7e-16 Score=141.35 Aligned_cols=100 Identities=19% Similarity=0.393 Sum_probs=86.7
Q ss_pred EEEecCCCCcccc-cCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcc--cceeeeeccchhhhhHHHHhCCCCccccc
Q 005374 138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI--ANTGMVELGDIRLATHLAERKPIGQIFFR 214 (699)
Q Consensus 138 V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~--~~va~Vdc~~~~~~~~L~~k~~i~~~f~V 214 (699)
|.+||.++|++.+ +.+++++|.||+|||++|+.+.|.|+++++.+++. +.+++|||+++ .+|..++ |
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~----~~~~~~~------~ 71 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN----DVPSEFV------V 71 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch----hhhhhcc------C
Confidence 6889999999988 56689999999999999999999999999999873 58999999954 2667776 6
Q ss_pred ccccEEEEcCCCCCCCCccccccCCcCHHHHHHHH
Q 005374 215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (699)
Q Consensus 215 ~gyPTl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi 249 (699)
.++||+++|++|... ....|.|.++.++|++|+
T Consensus 72 ~~~Pt~~~~~~~~~~--~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 72 DGFPTILFFPAGDKS--NPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred CCCCEEEEEcCCCcC--CceEccCCcCHHHHHhhC
Confidence 699999999998732 357899999999999985
No 25
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=8.7e-17 Score=176.06 Aligned_cols=69 Identities=28% Similarity=0.428 Sum_probs=64.2
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHHcCChhhhcccCcCCchhh
Q 005374 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (699)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~---~~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~~ 104 (699)
+.|||+||||+++||.+|||+|||+||++||||+|+ .++++|++|++||++|+||.+|+.||+||+++.
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~ 73 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGL 73 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhccccc
Confidence 469999999999999999999999999999999986 267889999999999999999999999998754
No 26
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.64 E-value=1.3e-16 Score=145.51 Aligned_cols=100 Identities=22% Similarity=0.362 Sum_probs=85.9
Q ss_pred EEecCCCCcccc-c--CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcc-cceeeeeccchhhhhHHHHhCCCCccccc
Q 005374 139 NVVTSEDFPSIF-H--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFR 214 (699)
Q Consensus 139 ~~Lt~~nF~~~v-~--~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~-~~va~Vdc~~~~~~~~L~~k~~i~~~f~V 214 (699)
..+|..+|.+.+ . .+++|||.||||||++|+.+.|.|+++++.+.+. +.+++|||++++. +|++++ |
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~---l~~~~~------V 77 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERR---LARKLG------A 77 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHH---HHHHcC------C
Confidence 567888897655 3 6899999999999999999999999999999874 6899999995544 899998 6
Q ss_pred ccccEEEEcCCCCCCCCccccccCCcCHHHHHHHHHH
Q 005374 215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT 251 (699)
Q Consensus 215 ~gyPTl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k 251 (699)
+++||+++|.+|.. ...+.|.++.+.|++|+.+
T Consensus 78 ~~~Pt~~i~~~g~~----~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 78 HSVPAIVGIINGQV----TFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred ccCCEEEEEECCEE----EEEecCCCCHHHHHHHHhc
Confidence 79999999998853 3556899999999999865
No 27
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.64 E-value=1.2e-16 Score=162.82 Aligned_cols=106 Identities=21% Similarity=0.427 Sum_probs=91.9
Q ss_pred cceEEEecCCCCccccc-----CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCC
Q 005374 135 VHAFNVVTSEDFPSIFH-----DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIG 209 (699)
Q Consensus 135 ~~~V~~Lt~~nF~~~v~-----~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~ 209 (699)
.+.|.+||.+||++.+. .+++|+|+||||||+||+++.|.|+++|+.+++.+.+++|||++++. +|++++
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~---l~~~~~-- 103 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALN---LAKRFA-- 103 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHH---HHHHcC--
Confidence 35689999999999874 25899999999999999999999999999999888999999996554 999998
Q ss_pred cccccccccEEEEcCCCCCCCCccccccCCcCHHHHHHHHHHHh
Q 005374 210 QIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI 253 (699)
Q Consensus 210 ~~f~V~gyPTl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~v 253 (699)
|++|||+++|.+|.. ...+.|.++.++|.+|+.+..
T Consensus 104 ----I~~~PTl~~f~~G~~----v~~~~G~~s~e~L~~fi~~~~ 139 (224)
T PTZ00443 104 ----IKGYPTLLLFDKGKM----YQYEGGDRSTEKLAAFALGDF 139 (224)
T ss_pred ----CCcCCEEEEEECCEE----EEeeCCCCCHHHHHHHHHHHH
Confidence 679999999998853 233468899999999998763
No 28
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=1.8e-16 Score=173.57 Aligned_cols=69 Identities=20% Similarity=0.418 Sum_probs=64.5
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhcccCcCCchhh
Q 005374 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (699)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~~ 104 (699)
..|||+||||+++|+.+|||+|||+||++||||+|+ .++++|++|++||++|+||++|+.||+||+++.
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~ 73 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAF 73 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhh
Confidence 369999999999999999999999999999999985 477899999999999999999999999998754
No 29
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=4.4e-16 Score=171.49 Aligned_cols=215 Identities=13% Similarity=0.202 Sum_probs=136.7
Q ss_pred eEEEecCCCCcccc-cCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhc---ccceeeeeccchhhhhHHHHhCCCCccc
Q 005374 137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQIF 212 (699)
Q Consensus 137 ~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g---~~~va~Vdc~~~~~~~~L~~k~~i~~~f 212 (699)
.|++|+..+|+.+| .+.+.+||+||++|||||.+++|.|+++|+.+++ ++.|++|||.+..... ||++++
T Consensus 40 ~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~-lCRef~----- 113 (606)
T KOG1731|consen 40 PIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVK-LCREFS----- 113 (606)
T ss_pred CeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhh-hHhhcC-----
Confidence 58999999999999 5667999999999999999999999999999975 4599999999654433 999998
Q ss_pred ccccccEEEEcCCCCCCCCccccccCCcCHHHHHHHHHHHhccC---------Ccceecccchhhhhhhhhc--CCCcEE
Q 005374 213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKL---------PRIFYYTKESMGKNFLAKT--GPHKVK 281 (699)
Q Consensus 213 ~V~gyPTl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~v~~l---------P~~~~it~~~~~~~Fl~~~--~~~~v~ 281 (699)
|++||||++|+.+.........+.|+-...+|.+.+.+.+... |....+++.+.+....++. ..+.+
T Consensus 114 -V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~~~~~~~yv- 191 (606)
T KOG1731|consen 114 -VSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEGISTTANYV- 191 (606)
T ss_pred -CCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhccccccccee-
Confidence 7799999999987554334567788888888888887664322 2222233322222222211 12333
Q ss_pred EEEEcCCCCCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCCCceeecCC---CChhHHHH
Q 005374 282 VIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGS---FNNSRLSE 358 (699)
Q Consensus 282 vl~f~~~~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~---~~~~~L~~ 358 (699)
.++|.... ...-+...+-..-...+....+. +...-.+.+ ++.+.+|..++|+.+..+++.-.+. .-.+.|.+
T Consensus 192 Aiv~e~~~-s~lg~~~~l~~l~~~~v~vr~~~--d~q~~~~~~-l~~~~~~~~llfrnG~~q~l~~~~~s~~~y~~~I~~ 267 (606)
T KOG1731|consen 192 AIVFETEP-SDLGWANLLNDLPSKQVGVRARL--DTQNFPLFG-LKPDNFPLALLFRNGEQQPLWPSSSSRSAYVKKIDD 267 (606)
T ss_pred EEEEecCC-cccHHHHHHhhccCCCcceEEEe--cchhccccc-cCCCCchhhhhhcCCcccccccccccHHHHHHHHHH
Confidence 55564322 11111111111111334444443 211223444 7777899999999887776532221 22245666
Q ss_pred HHHHh
Q 005374 359 VMEQN 363 (699)
Q Consensus 359 fi~~~ 363 (699)
+|-..
T Consensus 268 ~lg~~ 272 (606)
T KOG1731|consen 268 LLGDK 272 (606)
T ss_pred HhcCc
Confidence 66543
No 30
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.59 E-value=1.6e-15 Score=134.30 Aligned_cols=99 Identities=23% Similarity=0.389 Sum_probs=88.2
Q ss_pred ecCCCCcccccCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhc--ccceeeeeccchhhhhHHHHhCCCCccccccccc
Q 005374 141 VTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG--IANTGMVELGDIRLATHLAERKPIGQIFFRRGLP 218 (699)
Q Consensus 141 Lt~~nF~~~v~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g--~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyP 218 (699)
||.++|+..+.++++++|.||++||++|+++.|.|+++|..+++ .+.++.+||+++.. +|++++ |+++|
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~------i~~~P 71 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKD---LASRFG------VSGFP 71 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHH---HHHhCC------CCcCC
Confidence 56788998888899999999999999999999999999999987 46899999996554 899998 77999
Q ss_pred EEEEcCCCCCCCCccccccCCcCHHHHHHHHHHH
Q 005374 219 SLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (699)
Q Consensus 219 Tl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~ 252 (699)
++++|.+|.. ...|.|.++.+.|..|+.++
T Consensus 72 ~~~~~~~~~~----~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 72 TIKFFPKGKK----PVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred EEEEecCCCc----ceeecCCCCHHHHHHHHHhc
Confidence 9999998863 46899999999999999875
No 31
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.59 E-value=1e-15 Score=136.44 Aligned_cols=101 Identities=21% Similarity=0.347 Sum_probs=87.5
Q ss_pred EEEecCCCCcccccCCCcEEEEEeccCCCCCCCcchHHHHHHHHhh--cccceeeeeccchhhhhHHHHhCCCCcccccc
Q 005374 138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE--GIANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (699)
Q Consensus 138 V~~Lt~~nF~~~v~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~--g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~ 215 (699)
|.+|+..+|+..+.++++++|.||++||++|+++.|.++++++.+. +.+.++.|||++. ....+|++++ |+
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~------i~ 74 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKP-EHDALKEEYN------VK 74 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCC-ccHHHHHhCC------Cc
Confidence 6789999999989877899999999999999999999999999997 5568999999962 1334899988 67
Q ss_pred cccEEEEcCCCCCCCCccccccCCcCHHHHHHHH
Q 005374 216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (699)
Q Consensus 216 gyPTl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi 249 (699)
++||+++|++|.. ...|.|..+.+.|++|+
T Consensus 75 ~~Pt~~~~~~g~~----~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 75 GFPTFKYFENGKF----VEKYEGERTAEDIIEFM 104 (104)
T ss_pred cccEEEEEeCCCe----eEEeCCCCCHHHHHhhC
Confidence 9999999998864 36789999999999985
No 32
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.59 E-value=6.7e-16 Score=171.01 Aligned_cols=68 Identities=28% Similarity=0.488 Sum_probs=64.1
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChhhhcccCcCCchhh
Q 005374 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (699)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~~ 104 (699)
..|||+||||+++||.+|||+|||+||++||||+|+ +.++|++|++||++|+||.+|+.||+||.++.
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~-~~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~ 94 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGG-DPEKFKEISRAYEVLSDPEKRKIYDEYGEEGL 94 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCc-hHHHHHHHHHHHHHhccHHHHHHHhhhcchhc
Confidence 569999999999999999999999999999999986 46899999999999999999999999998754
No 33
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.59 E-value=1.4e-15 Score=134.26 Aligned_cols=93 Identities=14% Similarity=0.257 Sum_probs=80.8
Q ss_pred CCCcccc-cC-CCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEE
Q 005374 144 EDFPSIF-HD-SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLV 221 (699)
Q Consensus 144 ~nF~~~v-~~-~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~ 221 (699)
++|++.| ++ +++++|.||+|||++|+.+.|.|++++..+.+...+++|||++++. ||++++ |+++||++
T Consensus 1 ~~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---l~~~~~------i~~~Pt~~ 71 (96)
T cd02956 1 QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQ---IAQQFG------VQALPTVY 71 (96)
T ss_pred CChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHH---HHHHcC------CCCCCEEE
Confidence 3677777 44 6899999999999999999999999999998777899999996554 999998 67999999
Q ss_pred EcCCCCCCCCccccccCCcCHHHHHHHH
Q 005374 222 AFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (699)
Q Consensus 222 ~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi 249 (699)
+|.+|.. ...|.|.++.+.|.+|+
T Consensus 72 ~~~~g~~----~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 72 LFAAGQP----VDGFQGAQPEEQLRQML 95 (96)
T ss_pred EEeCCEE----eeeecCCCCHHHHHHHh
Confidence 9998854 35689999999999986
No 34
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=9.5e-16 Score=144.15 Aligned_cols=103 Identities=18% Similarity=0.278 Sum_probs=93.4
Q ss_pred eEEEecCCCCcccc-cCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccc
Q 005374 137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (699)
Q Consensus 137 ~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~ 215 (699)
.+..++...|++.| +++.|++|.|||+|||.|+.+.|..++++.+++|.+++++||.+++.. |+++|+ |.
T Consensus 44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~e---la~~Y~------I~ 114 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPE---LAEDYE------IS 114 (150)
T ss_pred cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccc---hHhhcc------ee
Confidence 45778889998887 899999999999999999999999999999999999999999995544 999999 66
Q ss_pred cccEEEEcCCCCCCCCccccccCCcCHHHHHHHHHHH
Q 005374 216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (699)
Q Consensus 216 gyPTl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~ 252 (699)
.+||+++|.+|... ..+.|..+.+.|.+|+.+.
T Consensus 115 avPtvlvfknGe~~----d~~vG~~~~~~l~~~i~k~ 147 (150)
T KOG0910|consen 115 AVPTVLVFKNGEKV----DRFVGAVPKEQLRSLIKKF 147 (150)
T ss_pred eeeEEEEEECCEEe----eeecccCCHHHHHHHHHHH
Confidence 99999999999753 5778999999999999887
No 35
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.59 E-value=2.5e-15 Score=133.86 Aligned_cols=100 Identities=20% Similarity=0.390 Sum_probs=86.7
Q ss_pred EEEecCCCCccccc-CCCcEEEEEeccCCCCCCCcchHHHHHHHHhh--cccceeeeeccc-hhhhhHHHHhCCCCcccc
Q 005374 138 FNVVTSEDFPSIFH-DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE--GIANTGMVELGD-IRLATHLAERKPIGQIFF 213 (699)
Q Consensus 138 V~~Lt~~nF~~~v~-~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~--g~~~va~Vdc~~-~~~~~~L~~k~~i~~~f~ 213 (699)
|.+||.++|+..+. ++++++|+|||+||++|+++.|.|+++++.++ +.+.++.+||.. +. .+|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~---~~~~~~~------ 72 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANK---DLAKKYG------ 72 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcch---hhHHhCC------
Confidence 57899999999884 56699999999999999999999999999997 346899999996 44 4999998
Q ss_pred cccccEEEEcCCCCCCCCccccccCCcCHHHHHHHH
Q 005374 214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (699)
Q Consensus 214 V~gyPTl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi 249 (699)
|+++||+++|.+|.. ....|.|.++.+.|.+|+
T Consensus 73 i~~~P~~~~~~~~~~---~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 73 VSGFPTLKFFPKGST---EPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred CCCcCEEEEEeCCCC---CccccCCccCHHHHHhhC
Confidence 669999999998853 357899999999999985
No 36
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.58 E-value=1.8e-15 Score=135.45 Aligned_cols=84 Identities=13% Similarity=0.267 Sum_probs=74.0
Q ss_pred cCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeecc-chhhhhHHHHhCCCCcccccccccEEEEcCCCCCC
Q 005374 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELG-DIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKS 229 (699)
Q Consensus 151 ~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~-~~~~~~~L~~k~~i~~~f~V~gyPTl~~f~~g~~~ 229 (699)
..+++++|.||||||++|+.+.|.|+++++.+.+ ..+++||++ +++. +|++++ |+++||+++|.+| .
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~~~~---l~~~~~------V~~~PT~~lf~~g-~- 83 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSIKPS---LLSRYG------VVGFPTILLFNST-P- 83 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCCCHH---HHHhcC------CeecCEEEEEcCC-c-
Confidence 3689999999999999999999999999999976 578889987 5554 899988 7799999999988 3
Q ss_pred CCccccccCCcCHHHHHHHH
Q 005374 230 SDCMTRFEGELSVDAVTDWF 249 (699)
Q Consensus 230 ~~~~~~Y~G~rs~~~Iv~fi 249 (699)
...|.|.++.++|++|+
T Consensus 84 ---~~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 84 ---RVRYNGTRTLDSLAAFY 100 (100)
T ss_pred ---eeEecCCCCHHHHHhhC
Confidence 36899999999999985
No 37
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=9.1e-16 Score=169.22 Aligned_cols=67 Identities=24% Similarity=0.419 Sum_probs=62.9
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHHcCChhhhcccCcCCch
Q 005374 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGID 102 (699)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~---~~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~ 102 (699)
..|||+||||+++|+.+|||+|||+|+++||||+|+ .+.++|++|++||++|+||++|+.||+||+.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~ 77 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRL 77 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhh
Confidence 469999999999999999999999999999999987 3578899999999999999999999999964
No 38
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=9.3e-16 Score=168.13 Aligned_cols=68 Identities=32% Similarity=0.544 Sum_probs=63.9
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHHcCChhhhcccCcCCchhh
Q 005374 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (699)
Q Consensus 37 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~---~~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~~ 104 (699)
.|||+||||+++|+.+|||+|||+|+++||||+|+ .++++|++|++||++|+||.+|+.||+||+++.
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 74 (372)
T PRK14286 4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGV 74 (372)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhh
Confidence 59999999999999999999999999999999986 357889999999999999999999999998764
No 39
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.6e-16 Score=168.70 Aligned_cols=70 Identities=26% Similarity=0.407 Sum_probs=64.4
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC----ChHHHHHHHHHHHHHcCChhhhcccCcCCchhhh
Q 005374 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI----PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (699)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~----~~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~~~ 105 (699)
...||+||||.++|+..+||++||+||++||||+|| .++++|+.|+.||+|||||..|++||.+.++.+.
T Consensus 7 ~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~ 80 (508)
T KOG0717|consen 7 KRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILR 80 (508)
T ss_pred hhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhc
Confidence 458999999999999999999999999999999988 3677899999999999999999999998876543
No 40
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=1.4e-15 Score=166.80 Aligned_cols=69 Identities=30% Similarity=0.582 Sum_probs=64.3
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhcccCcCCchhh
Q 005374 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (699)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~~ 104 (699)
..|||+||||+++|+.+|||+|||+|+++||||+|+ .++++|++|++||++|+||.+|+.||+||+++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~ 73 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDP 73 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCccc
Confidence 369999999999999999999999999999999985 467889999999999999999999999998754
No 41
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.56 E-value=5.3e-14 Score=143.27 Aligned_cols=188 Identities=12% Similarity=0.095 Sum_probs=126.7
Q ss_pred CCcEEEEEec---cCCCCCCCcchHHHHHHHHhhcc-cceeeeeccchhhhhHHHHhCCCCcccccccccEEEEcCCCCC
Q 005374 153 SKPWLIQVYS---DGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCK 228 (699)
Q Consensus 153 ~~~~lV~FYa---pwC~hCk~l~p~~~~~A~~L~g~-~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~f~~g~~ 228 (699)
+...++.|++ +||++|+.+.|.++++|+.+.+. +.+..||.++++. +|++++ |.++||+++|.+|..
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~---l~~~~~------V~~~Pt~~~f~~g~~ 89 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKE---EAEKYG------VERVPTTIILEEGKD 89 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHH---HHHHcC------CCccCEEEEEeCCee
Confidence 4455777999 99999999999999999998543 2455566555544 999998 779999999999864
Q ss_pred CCCccccccCCcCHHHHHHHHHHHhccCCcceecccchhhhhhhhhcCCCcEEEEEE-cCC---CCCchHHHHHHHHhcc
Q 005374 229 SSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFF-SKT---GERASPFVRQISRNYW 304 (699)
Q Consensus 229 ~~~~~~~Y~G~rs~~~Iv~fi~k~v~~lP~~~~it~~~~~~~Fl~~~~~~~v~vl~f-~~~---~~~~~~~~~~~A~~~~ 304 (699)
. ...|.|..+.+.+.+|+...+..-+....++. ...+. +... +..+.+++| ... |+...+.+..++.++
T Consensus 90 ~---~~~~~G~~~~~~l~~~i~~~~~~~~~~~~L~~-~~~~~-l~~~-~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~- 162 (215)
T TIGR02187 90 G---GIRYTGIPAGYEFAALIEDIVRVSQGEPGLSE-KTVEL-LQSL-DEPVRIEVFVTPTCPYCPYAVLMAHKFALAN- 162 (215)
T ss_pred e---EEEEeecCCHHHHHHHHHHHHHhcCCCCCCCH-HHHHH-HHhc-CCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-
Confidence 2 34788999999999999876321111222322 11222 2222 233455544 432 223345555566553
Q ss_pred CCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCCCceeecCCCChhHHHHHHHH
Q 005374 305 AYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (699)
Q Consensus 305 ~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~~~~~~L~~fi~~ 362 (699)
+.+.|..+... ..++++.+|+|.+.||+++++++. .+.|..+.+.|.+|+..
T Consensus 163 ~~i~~~~vD~~--~~~~~~~~~~V~~vPtl~i~~~~~----~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 163 DKILGEMIEAN--ENPDLAEKYGVMSVPKIVINKGVE----EFVGAYPEEQFLEYILS 214 (215)
T ss_pred CceEEEEEeCC--CCHHHHHHhCCccCCEEEEecCCE----EEECCCCHHHHHHHHHh
Confidence 46777766533 357899999999999999987532 26787788889888864
No 42
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.56 E-value=4.5e-15 Score=136.14 Aligned_cols=104 Identities=24% Similarity=0.416 Sum_probs=84.7
Q ss_pred eEEEecCCCCcccc-cCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhc---ccceeeeeccchhhhhHHHHhCCCCccc
Q 005374 137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQIF 212 (699)
Q Consensus 137 ~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g---~~~va~Vdc~~~~~~~~L~~k~~i~~~f 212 (699)
.|.+|+.++|+..| +++++++|.||||||++|+.+.|.|+++++.+++ .+.++.|||+.+. ...+|++++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~-~~~~~~~~~----- 75 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE-NVALCRDFG----- 75 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh-hHHHHHhCC-----
Confidence 36889999999998 4567999999999999999999999999999864 4689999997432 234899998
Q ss_pred ccccccEEEEcCCCCCCCCccccccCC-cCHHHHHH
Q 005374 213 FRRGLPSLVAFPPGCKSSDCMTRFEGE-LSVDAVTD 247 (699)
Q Consensus 213 ~V~gyPTl~~f~~g~~~~~~~~~Y~G~-rs~~~Iv~ 247 (699)
|++|||+++|++|........+|.|+ |..+.+.+
T Consensus 76 -i~~~Pt~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02992 76 -VTGYPTLRYFPPFSKEATDGLKQEGPERDVNELRE 110 (114)
T ss_pred -CCCCCEEEEECCCCccCCCCCcccCCccCHHHHHH
Confidence 66999999999987554455778887 76666643
No 43
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.56 E-value=2.1e-15 Score=165.60 Aligned_cols=69 Identities=29% Similarity=0.508 Sum_probs=64.3
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhcccCcCCchhh
Q 005374 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (699)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~~ 104 (699)
..|||+||||+++|+.+|||+|||+|+++||||+|+ .++++|++|++||++|+||.+|+.||+||+++.
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 74 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGI 74 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCcccc
Confidence 469999999999999999999999999999999985 467889999999999999999999999998753
No 44
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.56 E-value=2.2e-15 Score=165.70 Aligned_cols=68 Identities=32% Similarity=0.563 Sum_probs=64.2
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhcccCcCCchhh
Q 005374 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (699)
Q Consensus 37 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~~ 104 (699)
.|||+||||+++||.+|||+|||+|+++||||+|+ .++++|++|++||++|+||.+|+.||+||+++.
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~ 73 (380)
T PRK14276 4 TEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGA 73 (380)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccc
Confidence 69999999999999999999999999999999986 467899999999999999999999999998764
No 45
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.56 E-value=2.8e-15 Score=166.87 Aligned_cols=105 Identities=11% Similarity=0.288 Sum_probs=89.4
Q ss_pred eEEEecCCCCccccc---CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcc-cceeeeeccchhhhhHHHHhCCCCccc
Q 005374 137 AFNVVTSEDFPSIFH---DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIF 212 (699)
Q Consensus 137 ~V~~Lt~~nF~~~v~---~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~-~~va~Vdc~~~~~~~~L~~k~~i~~~f 212 (699)
.|++||.+||++.|. .++++||.||||||++|+.+.|.|+++|+++.+. +.|++|||+.+... .++++++
T Consensus 352 ~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~-~~~~~~~----- 425 (463)
T TIGR00424 352 NVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKE-FAKQELQ----- 425 (463)
T ss_pred CeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccH-HHHHHcC-----
Confidence 589999999999884 7889999999999999999999999999999875 58999999965321 1346777
Q ss_pred ccccccEEEEcCCCCCCCCcccccc-CCcCHHHHHHHHHH
Q 005374 213 FRRGLPSLVAFPPGCKSSDCMTRFE-GELSVDAVTDWFAT 251 (699)
Q Consensus 213 ~V~gyPTl~~f~~g~~~~~~~~~Y~-G~rs~~~Iv~fi~k 251 (699)
|++||||++|++|.. .+..|. |.|++++|+.|+..
T Consensus 426 -I~~~PTii~Fk~g~~---~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 426 -LGSFPTILFFPKHSS---RPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred -CCccceEEEEECCCC---CceeCCCCCCCHHHHHHHHHh
Confidence 779999999999864 357897 58999999999964
No 46
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.56 E-value=2.5e-15 Score=165.30 Aligned_cols=69 Identities=25% Similarity=0.467 Sum_probs=64.7
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhcccCcCCchhh
Q 005374 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (699)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~~ 104 (699)
..|||+||||+++|+.+|||+|||+|+++||||+|+ .+.++|++|++||++|+||.+|+.||+||+++.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~ 74 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGM 74 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhccccc
Confidence 469999999999999999999999999999999985 577899999999999999999999999998753
No 47
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=2.9e-15 Score=164.25 Aligned_cols=69 Identities=29% Similarity=0.583 Sum_probs=63.7
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCC----hHHHHHHHHHHHHHcCChhhhcccCcCCchhh
Q 005374 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (699)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~~ 104 (699)
..|||+||||+++|+.+|||+|||+|+++||||+|+. ++++|++|++||++|+||.+|+.||+||.++.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~ 75 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGE 75 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcccc
Confidence 3699999999999999999999999999999999863 46789999999999999999999999998653
No 48
>PRK09381 trxA thioredoxin; Provisional
Probab=99.55 E-value=6.1e-15 Score=133.41 Aligned_cols=103 Identities=17% Similarity=0.245 Sum_probs=90.2
Q ss_pred eEEEecCCCCcccc-cCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccc
Q 005374 137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (699)
Q Consensus 137 ~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~ 215 (699)
.|..++..+|.+.+ +.+++++|.||+|||++|+.+.|.|+++++.+.+.+.++.|||+.+.. ++++++ |+
T Consensus 4 ~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~---~~~~~~------v~ 74 (109)
T PRK09381 4 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG---TAPKYG------IR 74 (109)
T ss_pred cceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChh---HHHhCC------CC
Confidence 47889999999866 678899999999999999999999999999998878999999996544 888888 77
Q ss_pred cccEEEEcCCCCCCCCccccccCCcCHHHHHHHHHHH
Q 005374 216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (699)
Q Consensus 216 gyPTl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~ 252 (699)
++||+++|.+|.. ...+.|..+.+.|..|+...
T Consensus 75 ~~Pt~~~~~~G~~----~~~~~G~~~~~~l~~~i~~~ 107 (109)
T PRK09381 75 GIPTLLLFKNGEV----AATKVGALSKGQLKEFLDAN 107 (109)
T ss_pred cCCEEEEEeCCeE----EEEecCCCCHHHHHHHHHHh
Confidence 9999999998864 24678999999999999876
No 49
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=3.8e-15 Score=153.87 Aligned_cols=103 Identities=17% Similarity=0.287 Sum_probs=94.0
Q ss_pred eEEEecCCCCcccc--c-CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccc
Q 005374 137 AFNVVTSEDFPSIF--H-DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF 213 (699)
Q Consensus 137 ~V~~Lt~~nF~~~v--~-~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~ 213 (699)
.|.++|..||+..| . ...|+||.||||||++|++|.|..++++..++|.+.+++|||++++. ++.+||
T Consensus 24 ~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~---vAaqfg------ 94 (304)
T COG3118 24 GIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPM---VAAQFG------ 94 (304)
T ss_pred cceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchh---HHHHhC------
Confidence 37899999999988 3 45599999999999999999999999999999999999999996555 999998
Q ss_pred cccccEEEEcCCCCCCCCccccccCCcCHHHHHHHHHHH
Q 005374 214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (699)
Q Consensus 214 V~gyPTl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~ 252 (699)
|++.||+++|.+|.. ...|.|....+.|..|+.+.
T Consensus 95 iqsIPtV~af~dGqp----VdgF~G~qPesqlr~~ld~~ 129 (304)
T COG3118 95 VQSIPTVYAFKDGQP----VDGFQGAQPESQLRQFLDKV 129 (304)
T ss_pred cCcCCeEEEeeCCcC----ccccCCCCcHHHHHHHHHHh
Confidence 779999999999974 47789999999999999998
No 50
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=3e-15 Score=163.74 Aligned_cols=68 Identities=26% Similarity=0.435 Sum_probs=63.6
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhhcccCcCCchhh
Q 005374 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (699)
Q Consensus 37 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~~ 104 (699)
.|||++|||+++||.+|||+|||+|+++||||+|+. +.++|++|++||++|+||.+|+.||+||+.+.
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~ 73 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAF 73 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchh
Confidence 599999999999999999999999999999999863 56789999999999999999999999998754
No 51
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=4.2e-15 Score=163.37 Aligned_cols=66 Identities=29% Similarity=0.430 Sum_probs=62.6
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCC--hHHHHHHHHHHHHHcCChhhhcccCcCCch
Q 005374 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP--STADFLKIQYAYELLTDPLWKRNYDVYGID 102 (699)
Q Consensus 37 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~--~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~ 102 (699)
.|||+||||+++|+.+|||+|||+|+++||||+|+. ++++|++|++||++|+||.+|+.||+||++
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 70 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP 70 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence 599999999999999999999999999999999874 567899999999999999999999999975
No 52
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=3.9e-15 Score=158.18 Aligned_cols=67 Identities=30% Similarity=0.559 Sum_probs=63.5
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhcccCcCCchh
Q 005374 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (699)
Q Consensus 37 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~ 103 (699)
.|||+||||+++||.+|||+|||+|+++||||+|+ .+.++|++|++||++|+||.+|+.||+||.++
T Consensus 4 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~ 72 (291)
T PRK14299 4 KDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTA 72 (291)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCcc
Confidence 59999999999999999999999999999999985 46789999999999999999999999999875
No 53
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=3.9e-15 Score=163.52 Aligned_cols=68 Identities=29% Similarity=0.518 Sum_probs=64.1
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhcccCcCCchhh
Q 005374 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (699)
Q Consensus 37 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~~ 104 (699)
.|||+||||+++|+.+|||+|||+|+++||||+|+ .++++|++|++||++|+||.+|+.||+||+++.
T Consensus 4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~ 73 (376)
T PRK14280 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGP 73 (376)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCcccc
Confidence 69999999999999999999999999999999885 577899999999999999999999999998764
No 54
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=4e-15 Score=150.92 Aligned_cols=72 Identities=29% Similarity=0.475 Sum_probs=66.1
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhhcccCcCCchhhhhh
Q 005374 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHI 107 (699)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~~~~~ 107 (699)
..|+|+|||++++|+.++|||+||+|+++||||++++ +.++|++||+||+||+||.+|..||.||+.+..-.
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l~ 104 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKLA 104 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHHH
Confidence 4579999999999999999999999999999998763 78899999999999999999999999998886433
No 55
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=4.6e-15 Score=163.34 Aligned_cols=69 Identities=26% Similarity=0.516 Sum_probs=64.4
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhcccCcCCchhh
Q 005374 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (699)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~~ 104 (699)
..|||+||||+++|+.++||+|||+|+++||||+|+ .+.++|++|++||++|+||.+|+.||+||.++.
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~ 72 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAF 72 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhccccc
Confidence 469999999999999999999999999999999986 467889999999999999999999999998753
No 56
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=4.7e-15 Score=163.22 Aligned_cols=68 Identities=28% Similarity=0.553 Sum_probs=63.7
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHHcCChhhhcccCcCCchhh
Q 005374 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (699)
Q Consensus 37 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~---~~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~~ 104 (699)
.|||+||||+++|+.+|||+|||+|+++||||+|+ .++++|++|++||++|+||.+|+.||+||+++.
T Consensus 4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~ 74 (380)
T PRK14297 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADF 74 (380)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccc
Confidence 59999999999999999999999999999999986 356789999999999999999999999998764
No 57
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=4.3e-15 Score=162.77 Aligned_cols=69 Identities=29% Similarity=0.487 Sum_probs=64.2
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhhcccCcCCchhh
Q 005374 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (699)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~~ 104 (699)
..|||+||||+++|+.+|||+|||+|+++||||+|+. ++++|++|++||++|+||.+|+.||+||+++.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~ 74 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGL 74 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccc
Confidence 4699999999999999999999999999999999863 56789999999999999999999999998764
No 58
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.2e-14 Score=142.97 Aligned_cols=96 Identities=22% Similarity=0.339 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC--CCccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHH
Q 005374 9 KVKAYWAPLILFGLGLFYQLVVLPR--SFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYA 83 (699)
Q Consensus 9 ~~~~~~~~i~l~~~~~~~~~~~~~~--~~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~---~~~~~f~~I~~A 83 (699)
.+|.+.+.+.+++++++..-+.... ...-|||+||||+++++.+|||+|||+|++++||||++ +.++.|..|++|
T Consensus 69 ~~~~i~lv~~W~v~~fL~y~i~~~~~~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KA 148 (230)
T KOG0721|consen 69 TKRKVFLVVGWAVIAFLIYKIMNSRRERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKA 148 (230)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHH
Confidence 3444444444444444332222221 11569999999999999999999999999999999975 467779999999
Q ss_pred HHHcCChhhhcccCcCCchhh
Q 005374 84 YELLTDPLWKRNYDVYGIDEQ 104 (699)
Q Consensus 84 y~vL~d~~~R~~YD~~g~~~~ 104 (699)
|+.|+|+..|..|..||..++
T Consensus 149 Y~aLTD~~sreN~ekYG~PDG 169 (230)
T KOG0721|consen 149 YQALTDKKSRENWEKYGNPDG 169 (230)
T ss_pred HHHhcchhhHHHHHHhCCCCC
Confidence 999999999999999998764
No 59
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=4.6e-15 Score=163.55 Aligned_cols=69 Identities=28% Similarity=0.541 Sum_probs=64.0
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHHcCChhhhcccCcCCchhh
Q 005374 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (699)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~---~~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~~ 104 (699)
..|||+||||+++|+.+|||+|||+|+++||||+|+ .++++|++|++||++|+||.+|+.||+||+++.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~ 75 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAF 75 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccc
Confidence 369999999999999999999999999999999986 356789999999999999999999999998764
No 60
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.53 E-value=5.5e-15 Score=129.44 Aligned_cols=98 Identities=22% Similarity=0.442 Sum_probs=85.5
Q ss_pred EecCCCCcccccCCCcEEEEEeccCCCCCCCcchHHHHHHHHh--hcccceeeeeccchhhhhHHHHhCCCCcccccccc
Q 005374 140 VVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALL--EGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL 217 (699)
Q Consensus 140 ~Lt~~nF~~~v~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L--~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gy 217 (699)
+||.++|.+.+.++++++|.||++||++|+.+.|.|+++++.+ .+.+.++.|||+++. .+|++++ |+++
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~------i~~~ 72 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANN---DLCSEYG------VRGY 72 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchH---HHHHhCC------CCCC
Confidence 5778899998977779999999999999999999999999999 466799999999644 4999998 6799
Q ss_pred cEEEEcCCCCCCCCccccccCCcCHHHHHHHH
Q 005374 218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (699)
Q Consensus 218 PTl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi 249 (699)
||+++|.++.. ....|.|.++++.|.+|+
T Consensus 73 Pt~~~~~~~~~---~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 73 PTIKLFPNGSK---EPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CEEEEEcCCCc---ccccCCCCcCHHHHHhhC
Confidence 99999998842 367899999999999885
No 61
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=5.6e-15 Score=162.06 Aligned_cols=69 Identities=25% Similarity=0.450 Sum_probs=63.9
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhhcccCcCCchhh
Q 005374 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (699)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~~ 104 (699)
..|||++|||+++|+.++||+|||+|+++||||+|+. ++++|++|++||++|+||.+|+.||+||+++.
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~ 74 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGV 74 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcccccc
Confidence 3699999999999999999999999999999999863 56789999999999999999999999998754
No 62
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.53 E-value=1.7e-14 Score=129.67 Aligned_cols=94 Identities=16% Similarity=0.380 Sum_probs=79.3
Q ss_pred CCCcccccCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhc---ccceeeeeccchhhhhHHHHhCCCCcccccccccEE
Q 005374 144 EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL 220 (699)
Q Consensus 144 ~nF~~~v~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g---~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl 220 (699)
++|+.. ..++++||.||||||++|+.+.|.|+++++.+++ .+.++.+||++++. +|++++ |+++||+
T Consensus 7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~------I~~~Pt~ 76 (104)
T cd03000 7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSS---IASEFG------VRGYPTI 76 (104)
T ss_pred hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHh---HHhhcC------CccccEE
Confidence 678864 4567999999999999999999999999999964 25899999995544 889988 7799999
Q ss_pred EEcCCCCCCCCccccccCCcCHHHHHHHHHHH
Q 005374 221 VAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (699)
Q Consensus 221 ~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~ 252 (699)
++|.+|. ...|.|.++.+.|.+|+++.
T Consensus 77 ~l~~~~~-----~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 77 KLLKGDL-----AYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred EEEcCCC-----ceeecCCCCHHHHHHHHHhh
Confidence 9997663 35689999999999999764
No 63
>PLN02309 5'-adenylylsulfate reductase
Probab=99.52 E-value=7.4e-15 Score=163.49 Aligned_cols=105 Identities=14% Similarity=0.388 Sum_probs=90.4
Q ss_pred ceEEEecCCCCcccc---cCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcc-cceeeeecc-chhhhhHHHH-hCCCC
Q 005374 136 HAFNVVTSEDFPSIF---HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG-DIRLATHLAE-RKPIG 209 (699)
Q Consensus 136 ~~V~~Lt~~nF~~~v---~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~-~~va~Vdc~-~~~~~~~L~~-k~~i~ 209 (699)
..|..|+.+||++++ +.+++|||.||||||++|+.+.|.|+++|+.+.+. +.|++|||+ ++.. +|. +++
T Consensus 345 ~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~---la~~~~~-- 419 (457)
T PLN02309 345 QNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKE---FAKQELQ-- 419 (457)
T ss_pred CCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchH---HHHhhCC--
Confidence 358999999999887 47899999999999999999999999999999875 699999999 5444 775 577
Q ss_pred cccccccccEEEEcCCCCCCCCccccccC-CcCHHHHHHHHHHH
Q 005374 210 QIFFRRGLPSLVAFPPGCKSSDCMTRFEG-ELSVDAVTDWFATA 252 (699)
Q Consensus 210 ~~f~V~gyPTl~~f~~g~~~~~~~~~Y~G-~rs~~~Iv~fi~k~ 252 (699)
|++||||++|++|.. .+..|.| .|++++|+.|+...
T Consensus 420 ----I~~~PTil~f~~g~~---~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 420 ----LGSFPTILLFPKNSS---RPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred ----CceeeEEEEEeCCCC---CeeecCCCCcCHHHHHHHHHHh
Confidence 779999999998864 3678975 79999999999763
No 64
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.52 E-value=6.7e-15 Score=162.52 Aligned_cols=68 Identities=31% Similarity=0.539 Sum_probs=63.2
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhhcccCcCCchhh
Q 005374 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (699)
Q Consensus 37 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~~ 104 (699)
.|||+||||+++|+.+|||+|||+|+++||||+|++ ++++|++|++||++|+||.+|+.||+||+++.
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 71 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGP 71 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcccccc
Confidence 389999999999999999999999999999999873 56789999999999999999999999998753
No 65
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.52 E-value=6.9e-15 Score=120.66 Aligned_cols=60 Identities=35% Similarity=0.697 Sum_probs=56.6
Q ss_pred CcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCChH----HHHHHHHHHHHHcCChhhhcccC
Q 005374 38 SHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPST----ADFLKIQYAYELLTDPLWKRNYD 97 (699)
Q Consensus 38 d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~----~~f~~I~~Ay~vL~d~~~R~~YD 97 (699)
|||+||||+++++.++||++|+++++++|||++++.. +.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999977544 78999999999999999999997
No 66
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=9.9e-15 Score=161.40 Aligned_cols=68 Identities=25% Similarity=0.504 Sum_probs=63.7
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhhcccCcCCchhh
Q 005374 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (699)
Q Consensus 37 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~~ 104 (699)
.|||+||||+++|+.+|||+|||+|+++||||+|+. ++++|++|++||++|+||.+|+.||+||+++.
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~ 73 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGV 73 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhh
Confidence 599999999999999999999999999999999863 56889999999999999999999999998764
No 67
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=9.9e-15 Score=160.90 Aligned_cols=69 Identities=23% Similarity=0.468 Sum_probs=63.7
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHHcCChhhhcccCc----CCchhh
Q 005374 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDV----YGIDEQ 104 (699)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~---~~~~~f~~I~~Ay~vL~d~~~R~~YD~----~g~~~~ 104 (699)
..|||+||||+++|+.+|||+|||+|+++||||+|+ .++++|++|++||++|+||.+|+.||+ ||+++.
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~ 83 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGF 83 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhccccc
Confidence 469999999999999999999999999999999986 356889999999999999999999999 987653
No 68
>PHA02278 thioredoxin-like protein
Probab=99.50 E-value=1e-14 Score=131.32 Aligned_cols=96 Identities=9% Similarity=0.118 Sum_probs=79.3
Q ss_pred CCCCcccccCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhh-hhHHHHhCCCCcccccccccEEE
Q 005374 143 SEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLV 221 (699)
Q Consensus 143 ~~nF~~~v~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~-~~~L~~k~~i~~~f~V~gyPTl~ 221 (699)
..+|...+.++++++|.|||||||+|+.++|.++++++.+.+...+.+||+++++. ...++++++ |+++||++
T Consensus 4 ~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~------I~~iPT~i 77 (103)
T PHA02278 4 LVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFD------IMSTPVLI 77 (103)
T ss_pred HHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCC------CccccEEE
Confidence 35677778889999999999999999999999999998876656899999996421 123889988 77999999
Q ss_pred EcCCCCCCCCccccccCCcCHHHHHHH
Q 005374 222 AFPPGCKSSDCMTRFEGELSVDAVTDW 248 (699)
Q Consensus 222 ~f~~g~~~~~~~~~Y~G~rs~~~Iv~f 248 (699)
+|++|.. .....|..+.+.|.++
T Consensus 78 ~fk~G~~----v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 78 GYKDGQL----VKKYEDQVTPMQLQEL 100 (103)
T ss_pred EEECCEE----EEEEeCCCCHHHHHhh
Confidence 9999964 3567898888888775
No 69
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.50 E-value=1.4e-14 Score=158.99 Aligned_cols=69 Identities=30% Similarity=0.554 Sum_probs=63.8
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhhcccCcCCchhh
Q 005374 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (699)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~~ 104 (699)
..|||+||||+++|+.+|||+|||+|+++||||+|+. +.++|++|++||++|+||.+|+.||+||.++.
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~ 74 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAF 74 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcccccc
Confidence 4699999999999999999999999999999999863 56789999999999999999999999998754
No 70
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.48 E-value=2.9e-14 Score=156.17 Aligned_cols=68 Identities=31% Similarity=0.557 Sum_probs=63.3
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCC----hHHHHHHHHHHHHHcCChhhhcccCcCCchhh
Q 005374 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (699)
Q Consensus 37 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~~ 104 (699)
.|||+||||+++|+.+|||+|||+|+++||||+|+. +.++|++|++||++|+||.+|+.||+||+.+.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~ 74 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDF 74 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCccc
Confidence 599999999999999999999999999999999863 45789999999999999999999999998753
No 71
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.48 E-value=2.5e-14 Score=157.03 Aligned_cols=68 Identities=26% Similarity=0.462 Sum_probs=63.6
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhcccCcCCchhh
Q 005374 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (699)
Q Consensus 37 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~~ 104 (699)
.|||+||||+++||.+|||+|||+|+++||||+++ .++++|++|++||++|+|+.+|+.||+||+++.
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~ 72 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAF 72 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhcccccc
Confidence 59999999999999999999999999999999885 467789999999999999999999999998754
No 72
>PRK10996 thioredoxin 2; Provisional
Probab=99.48 E-value=2.7e-14 Score=135.56 Aligned_cols=103 Identities=20% Similarity=0.334 Sum_probs=91.5
Q ss_pred eEEEecCCCCcccccCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCccccccc
Q 005374 137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (699)
Q Consensus 137 ~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~g 216 (699)
.++.++..+|+..++++++++|.||++||++|+.+.|.++++++.+.+.+.+++||+++++. ++++++ |++
T Consensus 36 ~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~---l~~~~~------V~~ 106 (139)
T PRK10996 36 EVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERE---LSARFR------IRS 106 (139)
T ss_pred CCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHH---HHHhcC------CCc
Confidence 46788999999988889999999999999999999999999999998878999999996654 899998 779
Q ss_pred ccEEEEcCCCCCCCCccccccCCcCHHHHHHHHHHH
Q 005374 217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (699)
Q Consensus 217 yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~ 252 (699)
+||+++|.+|.. ...+.|..+.+.|.+|+.+.
T Consensus 107 ~Ptlii~~~G~~----v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 107 IPTIMIFKNGQV----VDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred cCEEEEEECCEE----EEEEcCCCCHHHHHHHHHHh
Confidence 999999998864 35678999999999999865
No 73
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.47 E-value=3e-14 Score=155.69 Aligned_cols=67 Identities=31% Similarity=0.566 Sum_probs=63.1
Q ss_pred CcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhcccCcCCchhh
Q 005374 38 SHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (699)
Q Consensus 38 d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~~ 104 (699)
|||+||||+++|+.++||+|||+|+++||||+|+ .+.++|++|++||++|+|+.+|+.||+||.++.
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~ 69 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGF 69 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccccc
Confidence 7999999999999999999999999999999985 467889999999999999999999999998764
No 74
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.8e-14 Score=154.65 Aligned_cols=70 Identities=29% Similarity=0.475 Sum_probs=64.4
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC------ChHHHHHHHHHHHHHcCChhhhcccCcCCchhhh
Q 005374 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI------PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (699)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~------~~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~~~ 105 (699)
..|||.+|||+++||.+|||+|||++++.|||||.. .+++.|+.|.+|||+|+||.+|+.||.||++|+.
T Consensus 8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 348999999999999999999999999999999754 3567799999999999999999999999999875
No 75
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=3.6e-14 Score=155.90 Aligned_cols=67 Identities=27% Similarity=0.517 Sum_probs=63.3
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhcccCcCCchh
Q 005374 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (699)
Q Consensus 37 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~ 103 (699)
.|||++|||+++|+.++||+|||+|+++||||+++ .+.++|++|++||++|+||.+|+.||+||+++
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~ 70 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAP 70 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcc
Confidence 58999999999999999999999999999999986 46788999999999999999999999999875
No 76
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=3.8e-14 Score=155.72 Aligned_cols=69 Identities=26% Similarity=0.509 Sum_probs=64.2
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhcccCcCCchhh
Q 005374 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (699)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~~ 104 (699)
..|||+||||+++|+.++||+|||+|+++||||+|+ .++++|.+|++||++|+||.+|+.||.||+++.
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~ 72 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGV 72 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhcccccc
Confidence 359999999999999999999999999999999886 477889999999999999999999999998753
No 77
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.46 E-value=4e-14 Score=164.09 Aligned_cols=70 Identities=26% Similarity=0.409 Sum_probs=65.2
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhcccCcCCchhhh
Q 005374 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (699)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~~~ 105 (699)
..+||+||||+++|+..+||+|||+||++||||+++ .+.++|+.|++||++|+||.+|+.||.||..+..
T Consensus 572 d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~ 643 (1136)
T PTZ00341 572 DTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIK 643 (1136)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccccC
Confidence 679999999999999999999999999999999987 3567899999999999999999999999988743
No 78
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.46 E-value=3.3e-14 Score=136.76 Aligned_cols=90 Identities=16% Similarity=0.352 Sum_probs=76.3
Q ss_pred ceEEEecCCCCccccc--CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcc-cceeeeeccchhhhhHHHHhCCCCccc
Q 005374 136 HAFNVVTSEDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIF 212 (699)
Q Consensus 136 ~~V~~Lt~~nF~~~v~--~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~-~~va~Vdc~~~~~~~~L~~k~~i~~~f 212 (699)
+.|.+++.++|++.+. .+.+|+|.||||||++|+.+.|.|+++|+++.+. +.+++|||++++. +|++++|...|
T Consensus 28 ~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~---la~~~~V~~~~ 104 (152)
T cd02962 28 EHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPN---VAEKFRVSTSP 104 (152)
T ss_pred CccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHH---HHHHcCceecC
Confidence 3578899999998883 4579999999999999999999999999999754 6999999996654 99999965444
Q ss_pred ccccccEEEEcCCCCC
Q 005374 213 FRRGLPSLVAFPPGCK 228 (699)
Q Consensus 213 ~V~gyPTl~~f~~g~~ 228 (699)
.|+++||+++|.+|..
T Consensus 105 ~v~~~PT~ilf~~Gk~ 120 (152)
T cd02962 105 LSKQLPTIILFQGGKE 120 (152)
T ss_pred CcCCCCEEEEEECCEE
Confidence 4556999999999864
No 79
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=4.4e-14 Score=149.24 Aligned_cols=68 Identities=28% Similarity=0.601 Sum_probs=63.5
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhcccCcCCchh
Q 005374 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (699)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~ 103 (699)
..|||+||||+++|+.+|||+||++|+++||||.|. .+.++|++|.+|||+|+|+++|+.||.+|..+
T Consensus 42 ~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 42 KEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred CcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 449999999999999999999999999999999765 67888999999999999999999999998775
No 80
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.45 E-value=5.9e-12 Score=123.72 Aligned_cols=153 Identities=19% Similarity=0.357 Sum_probs=119.1
Q ss_pred chHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCCCceeecCC-CChhHHHHHHHHhhcccccc
Q 005374 292 ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGS-FNNSRLSEVMEQNKLQGLYF 370 (699)
Q Consensus 292 ~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~-~~~~~L~~fi~~~~~~~~~~ 370 (699)
..-.+..+|..+.+.+.|+.+. +.+++++++++. |+|++|++++.+++.|.|. ++.+.|.+||..+++|
T Consensus 8 ~~~~f~~~A~~~~~~~~F~~~~-----~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P---- 77 (184)
T PF13848_consen 8 LFEIFEEAAEKLKGDYQFGVTF-----NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFP---- 77 (184)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEE------HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSST----
T ss_pred HHHHHHHHHHhCcCCcEEEEEc-----HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhccc----
Confidence 4455667899999899999985 467999999987 9999999988888999998 8999999999999999
Q ss_pred CCccccccccccchhhhhhccCcCCCCCCCCCccceEEEEEecc-CChhHHHHHHHHHHHHHhhccCcccccccccccch
Q 005374 371 CGTCVSELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGR-LSPELNKMRETIRRVQETLLSDDESNAADTDQSLA 449 (699)
Q Consensus 371 ~~~~~~~vp~Lts~s~~~~~c~~~~~~~~~~~~~~~lCvI~~~~-~~~~~~~~~~~lr~~a~~l~~~~~~~~~~~~~~~~ 449 (699)
.++++|..+.....- .++ ..+++++.. +....+.+++.++.+|+
T Consensus 78 ------~v~~~t~~n~~~~~~-------~~~----~~~~~~~~~~~~~~~~~~~~~l~~~a~------------------ 122 (184)
T PF13848_consen 78 ------LVPELTPENFEKLFS-------SPK----PPVLILFDNKDNESTEAFKKELQDIAK------------------ 122 (184)
T ss_dssp ------SCEEESTTHHHHHHS-------TSS----EEEEEEEETTTHHHHHHHHHHHHHHHH------------------
T ss_pred ------cccccchhhHHHHhc-------CCC----ceEEEEEEcCCchhHHHHHHHHHHHHH------------------
Confidence 899999887765442 122 345555543 44566777888888887
Q ss_pred hHHHhcCCCeEEEEEEeCcchHHHHHHhccccccccccCCcCCCCCCCeEEEEEeecCCcc
Q 005374 450 PAAVAFRNKRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTE 510 (699)
Q Consensus 450 ~~a~~~k~~~l~F~wvd~~~q~~f~~~fl~~~~~~~~c~~~~~~~~~p~lvI~~~rr~~~~ 510 (699)
+++++ +.|+|+|++..+++++.|...+ .++|.++|+ +.+.
T Consensus 123 ----~~~~~-~~f~~~d~~~~~~~~~~~~i~~------------~~~P~~vi~----~~~~ 162 (184)
T PF13848_consen 123 ----KFKGK-INFVYVDADDFPRLLKYFGIDE------------DDLPALVIF----DSNK 162 (184)
T ss_dssp ----CTTTT-SEEEEEETTTTHHHHHHTTTTT------------SSSSEEEEE----ETTT
T ss_pred ----hcCCe-EEEEEeehHHhHHHHHHcCCCC------------ccCCEEEEE----ECCC
Confidence 67764 9999999998889999773321 345999998 6544
No 81
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.45 E-value=5.3e-14 Score=126.53 Aligned_cols=96 Identities=11% Similarity=0.083 Sum_probs=77.5
Q ss_pred CCCCccccc--CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEE
Q 005374 143 SEDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL 220 (699)
Q Consensus 143 ~~nF~~~v~--~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl 220 (699)
.++|++.|. .+++++|.|||+||++|+.+.|.++++++.+ +.+.+++||++++.....+|++++ |+++||+
T Consensus 3 ~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~------V~~~Pt~ 75 (103)
T cd02985 3 VEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREK------IIEVPHF 75 (103)
T ss_pred HHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcC------CCcCCEE
Confidence 456777773 4899999999999999999999999999999 556899999997754456999998 7799999
Q ss_pred EEcCCCCCCCCccccccCCcCHHHHHHHHH
Q 005374 221 VAFPPGCKSSDCMTRFEGELSVDAVTDWFA 250 (699)
Q Consensus 221 ~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi~ 250 (699)
++|++|.. ...+.| ...+.|..-+.
T Consensus 76 ~~~~~G~~----v~~~~G-~~~~~l~~~~~ 100 (103)
T cd02985 76 LFYKDGEK----IHEEEG-IGPDELIGDVL 100 (103)
T ss_pred EEEeCCeE----EEEEeC-CCHHHHHHHHH
Confidence 99998864 356777 44566665543
No 82
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.45 E-value=4.1e-14 Score=156.12 Aligned_cols=69 Identities=25% Similarity=0.495 Sum_probs=63.9
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHHcCChhhhcccCcCCchhh
Q 005374 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (699)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~---~~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~~ 104 (699)
..|||++|||+++|+.+|||+|||+|+++||||+|+ .+.++|++|++||++|+||.+|+.||+||..+.
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~ 75 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGV 75 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhccccc
Confidence 369999999999999999999999999999999986 356789999999999999999999999998753
No 83
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=5.8e-14 Score=147.30 Aligned_cols=69 Identities=25% Similarity=0.396 Sum_probs=64.4
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhhcccCcCCchhh
Q 005374 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (699)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~~ 104 (699)
..|||++|||+.+|+..+|++|||+.+++||||+||+ +.++|+.+.+||++|+|+..|+.||.+|..+.
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~ 75 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGS 75 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcc
Confidence 4699999999999999999999999999999999984 67889999999999999999999999997763
No 84
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.43 E-value=1.4e-13 Score=121.28 Aligned_cols=99 Identities=19% Similarity=0.296 Sum_probs=84.4
Q ss_pred ecCCCCccccc-CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccE
Q 005374 141 VTSEDFPSIFH-DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPS 219 (699)
Q Consensus 141 Lt~~nF~~~v~-~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPT 219 (699)
++.++|...+. ..++++|.||++||++|+.+.|.++++++.+.+.+.++.|||+++.. ++++++ |.++||
T Consensus 1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~------v~~~P~ 71 (101)
T TIGR01068 1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPD---IAAKYG------IRSIPT 71 (101)
T ss_pred CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHH---HHHHcC------CCcCCE
Confidence 35567777774 46699999999999999999999999999998778999999996554 889988 779999
Q ss_pred EEEcCCCCCCCCccccccCCcCHHHHHHHHHHH
Q 005374 220 LVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (699)
Q Consensus 220 l~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~ 252 (699)
+++|++|.. ...+.|..+.+.|.+|+.+.
T Consensus 72 ~~~~~~g~~----~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 72 LLLFKNGKE----VDRSVGALPKAALKQLINKN 100 (101)
T ss_pred EEEEeCCcE----eeeecCCCCHHHHHHHHHhh
Confidence 999988864 35678999999999999875
No 85
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.43 E-value=7.7e-14 Score=149.38 Aligned_cols=66 Identities=24% Similarity=0.471 Sum_probs=62.2
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhcccCcCCch
Q 005374 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGID 102 (699)
Q Consensus 37 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~ 102 (699)
.|||++|||+++|+.++||+|||+|+++||||+|+ .+.++|++|++||++|+||.+|+.||.||..
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~ 71 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQH 71 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 59999999999999999999999999999999885 5778999999999999999999999999854
No 86
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=9.5e-14 Score=137.61 Aligned_cols=68 Identities=24% Similarity=0.450 Sum_probs=62.8
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC-----ChHHHHHHHHHHHHHcCChhhhcccCcCCchh
Q 005374 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI-----PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (699)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~-----~~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~ 103 (699)
..|+|+||||.++|+..+||+|||+|+++||||+++ .+.++|++++.||.||+|.++|+.||.-|.-+
T Consensus 13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 569999999999999999999999999999999985 46778999999999999999999999988544
No 87
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.42 E-value=1.4e-13 Score=125.86 Aligned_cols=83 Identities=14% Similarity=0.211 Sum_probs=72.5
Q ss_pred cceEEEecCCCCcccccC---CCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcc
Q 005374 135 VHAFNVVTSEDFPSIFHD---SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQI 211 (699)
Q Consensus 135 ~~~V~~Lt~~nF~~~v~~---~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~ 211 (699)
++.|.++|.++|.+.|.+ +.+++|.||+|||++|+.+.|.++++|+.+.+ +.+++||++++ .+|++++
T Consensus 3 ~g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-v~f~~vd~~~~----~l~~~~~---- 73 (113)
T cd02957 3 FGEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-TKFVKINAEKA----FLVNYLD---- 73 (113)
T ss_pred CceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-cEEEEEEchhh----HHHHhcC----
Confidence 346889999999998843 38999999999999999999999999999865 58999999954 4899998
Q ss_pred cccccccEEEEcCCCCC
Q 005374 212 FFRRGLPSLVAFPPGCK 228 (699)
Q Consensus 212 f~V~gyPTl~~f~~g~~ 228 (699)
|+++||+++|.+|..
T Consensus 74 --i~~~Pt~~~f~~G~~ 88 (113)
T cd02957 74 --IKVLPTLLVYKNGEL 88 (113)
T ss_pred --CCcCCEEEEEECCEE
Confidence 779999999999964
No 88
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.42 E-value=2e-13 Score=123.82 Aligned_cols=96 Identities=15% Similarity=0.099 Sum_probs=84.4
Q ss_pred EEEecCCCCcccccCCCcEEEEEeccC--CCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccc
Q 005374 138 FNVVTSEDFPSIFHDSKPWLIQVYSDG--SYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (699)
Q Consensus 138 V~~Lt~~nF~~~v~~~~~~lV~FYapw--C~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~ 215 (699)
...+|..||++.+..+.+.+|.||++| |++|..+.|.++++|+++.+.+.+++||+++++ .|+.+|+ |+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~---~la~~f~------V~ 82 (111)
T cd02965 12 WPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ---ALAARFG------VL 82 (111)
T ss_pred CcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH---HHHHHcC------CC
Confidence 357899999988888999999999997 999999999999999999988899999999665 4999998 77
Q ss_pred cccEEEEcCCCCCCCCccccccCCcCHHHHH
Q 005374 216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVT 246 (699)
Q Consensus 216 gyPTl~~f~~g~~~~~~~~~Y~G~rs~~~Iv 246 (699)
++||+++|++|.. ...+.|..+.+.++
T Consensus 83 sIPTli~fkdGk~----v~~~~G~~~~~e~~ 109 (111)
T cd02965 83 RTPALLFFRDGRY----VGVLAGIRDWDEYV 109 (111)
T ss_pred cCCEEEEEECCEE----EEEEeCccCHHHHh
Confidence 9999999999964 35667888777664
No 89
>PTZ00102 disulphide isomerase; Provisional
Probab=99.41 E-value=2.1e-13 Score=154.39 Aligned_cols=107 Identities=14% Similarity=0.239 Sum_probs=93.5
Q ss_pred cceEEEecCCCCcccc-cCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhc--ccceeeeeccchhhhhHHHHhCCCCcc
Q 005374 135 VHAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG--IANTGMVELGDIRLATHLAERKPIGQI 211 (699)
Q Consensus 135 ~~~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g--~~~va~Vdc~~~~~~~~L~~k~~i~~~ 211 (699)
...|..|+.++|+..| ++++++||.||||||+||+.+.|.|+++|+.+++ .+.++.|||+.+.. +|++++
T Consensus 356 ~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~---~~~~~~---- 428 (477)
T PTZ00102 356 DGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANET---PLEEFS---- 428 (477)
T ss_pred CCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCcc---chhcCC----
Confidence 3458899999999986 7889999999999999999999999999999875 35899999996655 778887
Q ss_pred cccccccEEEEcCCCCCCCCccccccCCcCHHHHHHHHHHHh
Q 005374 212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI 253 (699)
Q Consensus 212 f~V~gyPTl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~v 253 (699)
|+++||+++|++|... +..|.|.++.++|.+|+.+++
T Consensus 429 --v~~~Pt~~~~~~~~~~---~~~~~G~~~~~~l~~~i~~~~ 465 (477)
T PTZ00102 429 --WSAFPTILFVKAGERT---PIPYEGERTVEGFKEFVNKHA 465 (477)
T ss_pred --CcccCeEEEEECCCcc---eeEecCcCCHHHHHHHHHHcC
Confidence 7799999999988653 567999999999999999883
No 90
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.41 E-value=1.3e-13 Score=123.78 Aligned_cols=96 Identities=13% Similarity=0.154 Sum_probs=78.7
Q ss_pred ecCCCCcccccCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcc-cceeeeeccchhhhhHHHHhCCCCcccccccccE
Q 005374 141 VTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRRGLPS 219 (699)
Q Consensus 141 Lt~~nF~~~v~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~-~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPT 219 (699)
-|.++|+..++++++++|.|||+||++|+.+.|.++++++.+++. +.++.||++ +.. ++++++ |+++||
T Consensus 5 ~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~---~~~~~~------v~~~Pt 74 (102)
T cd02948 5 NNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TID---TLKRYR------GKCEPT 74 (102)
T ss_pred cCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHH---HHHHcC------CCcCcE
Confidence 466788888888999999999999999999999999999999754 589999998 333 788888 779999
Q ss_pred EEEcCCCCCCCCccccccCCcCHHHHHHHHHH
Q 005374 220 LVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT 251 (699)
Q Consensus 220 l~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k 251 (699)
+++|++|... ....| .+.+.|.+++.+
T Consensus 75 ~~~~~~g~~~----~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 75 FLFYKNGELV----AVIRG-ANAPLLNKTITE 101 (102)
T ss_pred EEEEECCEEE----EEEec-CChHHHHHHHhh
Confidence 9999988642 33456 477888877753
No 91
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=4e-13 Score=148.42 Aligned_cols=105 Identities=23% Similarity=0.471 Sum_probs=92.4
Q ss_pred eEEEecCCCCcccc-cCCCcEEEEEeccCCCCCCCcchHHHHHHHHhh--cccceeeeeccchhhhhHHHHhCCCCcccc
Q 005374 137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE--GIANTGMVELGDIRLATHLAERKPIGQIFF 213 (699)
Q Consensus 137 ~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~--g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~ 213 (699)
+|..++..||...+ +.+..|||.||+|||+||+.++|+|+++|..++ +.+.++.+||+ ....+|++++
T Consensus 145 ~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~---~~~~~~~~~~------ 215 (383)
T KOG0191|consen 145 EVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT---VHKSLASRLE------ 215 (383)
T ss_pred ceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccc---hHHHHhhhhc------
Confidence 48999999999887 688999999999999999999999999999996 45599999999 4445899988
Q ss_pred cccccEEEEcCCCCCCCCccccccCCcCHHHHHHHHHHHh
Q 005374 214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI 253 (699)
Q Consensus 214 V~gyPTl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~v 253 (699)
|++|||+++|++|.. ....|.|.|+.+.|+.|+.+..
T Consensus 216 v~~~Pt~~~f~~~~~---~~~~~~~~R~~~~i~~~v~~~~ 252 (383)
T KOG0191|consen 216 VRGYPTLKLFPPGEE---DIYYYSGLRDSDSIVSFVEKKE 252 (383)
T ss_pred ccCCceEEEecCCCc---ccccccccccHHHHHHHHHhhc
Confidence 669999999999865 2466789999999999999873
No 92
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.39 E-value=8.1e-14 Score=127.17 Aligned_cols=76 Identities=14% Similarity=0.118 Sum_probs=67.3
Q ss_pred CCCccccc--CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEE
Q 005374 144 EDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLV 221 (699)
Q Consensus 144 ~nF~~~v~--~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~ 221 (699)
++|+..+. ++++++|.|||+||++|+.+.|.++++|.++.+.+.|++||+++++. |+++++ |++.||++
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~---la~~~~------V~~iPTf~ 73 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPD---FNKMYE------LYDPPTVM 73 (114)
T ss_pred HHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHH---HHHHcC------CCCCCEEE
Confidence 35666663 67899999999999999999999999999998888999999997665 999998 67999999
Q ss_pred EcCCCCC
Q 005374 222 AFPPGCK 228 (699)
Q Consensus 222 ~f~~g~~ 228 (699)
+|++|..
T Consensus 74 ~fk~G~~ 80 (114)
T cd02954 74 FFFRNKH 80 (114)
T ss_pred EEECCEE
Confidence 9999964
No 93
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.38 E-value=5.7e-13 Score=107.63 Aligned_cols=55 Identities=31% Similarity=0.585 Sum_probs=51.2
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCC----hHHHHHHHHHHHHHcCChh
Q 005374 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPL 91 (699)
Q Consensus 37 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~f~~I~~Ay~vL~d~~ 91 (699)
.|||+||||+++++.++||++|++|++++|||++++ +.+.|..|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 489999999999999999999999999999999874 6778999999999999985
No 94
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=3.8e-13 Score=134.49 Aligned_cols=89 Identities=26% Similarity=0.345 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCC--hHHHHHHHHHHHHHcC
Q 005374 11 KAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP--STADFLKIQYAYELLT 88 (699)
Q Consensus 11 ~~~~~~i~l~~~~~~~~~~~~~~~~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~--~~~~f~~I~~Ay~vL~ 88 (699)
.++|+.+++++-.++..++--..+...|+|+||||.+.++..+|.+|||+|+++||||++++ +.+.|..|..||++|.
T Consensus 7 ~rw~Lvl~~Llp~l~vgl~egLYCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilk 86 (329)
T KOG0722|consen 7 ERWCLVLILLLPSLFVGLSEGLYCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILK 86 (329)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhcccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhccccccc
Confidence 56666666666555555544444457899999999999999999999999999999998764 4566999999999999
Q ss_pred ChhhhcccCcC
Q 005374 89 DPLWKRNYDVY 99 (699)
Q Consensus 89 d~~~R~~YD~~ 99 (699)
|.+.|..||-.
T Consensus 87 d~e~rt~ydya 97 (329)
T KOG0722|consen 87 DNETRTQYDYA 97 (329)
T ss_pred chhhHHhHHHH
Confidence 99999999954
No 95
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.37 E-value=7.7e-13 Score=104.85 Aligned_cols=52 Identities=37% Similarity=0.636 Sum_probs=49.2
Q ss_pred CcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCC
Q 005374 38 SHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTD 89 (699)
Q Consensus 38 d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~f~~I~~Ay~vL~d 89 (699)
|||++|||+++++.++||++||+|+++||||++++ +.+.|.+|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 69999999999999999999999999999999875 67889999999999986
No 96
>PHA03102 Small T antigen; Reviewed
Probab=99.36 E-value=6.5e-13 Score=126.84 Aligned_cols=67 Identities=10% Similarity=0.134 Sum_probs=62.6
Q ss_pred cCcccccCcCCCC--CHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChhhhcccCcCCchhh
Q 005374 37 PSHYDALGIKPYS--SVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (699)
Q Consensus 37 ~d~Y~vLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~~ 104 (699)
..+|+||||+++| |.++||+|||++++++|||++ ++.++|++|++||++|+|+..|..||.+|.++.
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkg-g~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~ 73 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKG-GDEEKMKELNTLYKKFRESVKSLRDLDGEEDSS 73 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC-chhHHHHHHHHHHHHHhhHHHhccccccCCccc
Confidence 4679999999999 999999999999999999997 567899999999999999999999999998764
No 97
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.35 E-value=7.7e-13 Score=118.68 Aligned_cols=96 Identities=17% Similarity=0.141 Sum_probs=79.4
Q ss_pred CCCcccccCCCcEEEEEeccCCCCCCCcchHH---HHHHHHhhcccceeeeeccchh-hhhHHHHhCCCCcccccccccE
Q 005374 144 EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDIR-LATHLAERKPIGQIFFRRGLPS 219 (699)
Q Consensus 144 ~nF~~~v~~~~~~lV~FYapwC~hCk~l~p~~---~~~A~~L~g~~~va~Vdc~~~~-~~~~L~~k~~i~~~f~V~gyPT 219 (699)
+.|.+.+.+++++||.||++||++|+.+.|.+ +++++.+.+.+.++.||++++. ....++++++ |+++||
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~------i~~~Pt 75 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFG------VFGPPT 75 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcC------CCCCCE
Confidence 35667777889999999999999999999998 6888888876689999998532 2345899988 679999
Q ss_pred EEEcCC--CCCCCCccccccCCcCHHHHHHHH
Q 005374 220 LVAFPP--GCKSSDCMTRFEGELSVDAVTDWF 249 (699)
Q Consensus 220 l~~f~~--g~~~~~~~~~Y~G~rs~~~Iv~fi 249 (699)
+++|.+ |. ....+.|..+.+.|.+++
T Consensus 76 i~~~~~~~g~----~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 76 YLFYGPGGEP----EPLRLPGFLTADEFLEAL 103 (104)
T ss_pred EEEECCCCCC----CCcccccccCHHHHHHHh
Confidence 999985 44 346789999999998886
No 98
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.35 E-value=1.3e-12 Score=136.36 Aligned_cols=67 Identities=31% Similarity=0.562 Sum_probs=59.8
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCC------hHHHHHHHHHHHHHcCChhhhcccCcCCchh
Q 005374 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP------STADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (699)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~------~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~ 103 (699)
..|||+||||.++|+..||.+|||+++.+||||.-.. ++.+|..|..|-+||+||++|+.||+ |++.
T Consensus 393 kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDP 465 (504)
T KOG0624|consen 393 KRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDP 465 (504)
T ss_pred cchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC-CCCC
Confidence 7799999999999999999999999999999996542 45569999999999999999999996 4443
No 99
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.33 E-value=1.6e-12 Score=119.18 Aligned_cols=82 Identities=17% Similarity=0.253 Sum_probs=72.8
Q ss_pred eEEEecC-CCCcccccCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccc
Q 005374 137 AFNVVTS-EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (699)
Q Consensus 137 ~V~~Lt~-~nF~~~v~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~ 215 (699)
.|..++. ++|.+.|.++.+++|.||+|||++|+.+.|.++++++.+.+ +++.+||+++++. ++++++ |+
T Consensus 5 ~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~~~~---l~~~~~------v~ 74 (113)
T cd02989 5 KYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEKAPF---LVEKLN------IK 74 (113)
T ss_pred CeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEcccCHH---HHHHCC------Cc
Confidence 4677887 88999998889999999999999999999999999998855 6999999996655 899998 77
Q ss_pred cccEEEEcCCCCC
Q 005374 216 GLPSLVAFPPGCK 228 (699)
Q Consensus 216 gyPTl~~f~~g~~ 228 (699)
++||+++|.+|..
T Consensus 75 ~vPt~l~fk~G~~ 87 (113)
T cd02989 75 VLPTVILFKNGKT 87 (113)
T ss_pred cCCEEEEEECCEE
Confidence 9999999999964
No 100
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.30 E-value=3.6e-12 Score=121.55 Aligned_cols=103 Identities=15% Similarity=0.182 Sum_probs=83.0
Q ss_pred CCCCcccccCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEEE
Q 005374 143 SEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA 222 (699)
Q Consensus 143 ~~nF~~~v~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~ 222 (699)
...|+..+..+++++|.|||+||++|+.+.|.++++++.+.+...|..||++.+. ...++++|+ |+++||+++
T Consensus 10 ~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~-~~~~~~~~~------V~~iPt~v~ 82 (142)
T cd02950 10 STPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK-WLPEIDRYR------VDGIPHFVF 82 (142)
T ss_pred cCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc-cHHHHHHcC------CCCCCEEEE
Confidence 4456666778899999999999999999999999999999776778888877432 124788888 779999999
Q ss_pred cC-CCCCCCCccccccCCcCHHHHHHHHHHHhccC
Q 005374 223 FP-PGCKSSDCMTRFEGELSVDAVTDWFATAILKL 256 (699)
Q Consensus 223 f~-~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~v~~l 256 (699)
|. +|.. ...+.|....+.|.+++.+.+.+.
T Consensus 83 ~~~~G~~----v~~~~G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 83 LDREGNE----EGQSIGLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred ECCCCCE----EEEEeCCCCHHHHHHHHHHHHcCC
Confidence 95 5643 356789999999999998875433
No 101
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.30 E-value=2.4e-12 Score=144.49 Aligned_cols=104 Identities=15% Similarity=0.310 Sum_probs=90.4
Q ss_pred ceEEEecCCCCcccc-cCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhc---ccceeeeeccchhhhhHHHHhCCCCcc
Q 005374 136 HAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQI 211 (699)
Q Consensus 136 ~~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g---~~~va~Vdc~~~~~~~~L~~k~~i~~~ 211 (699)
..|..|+..+|++.+ +.++.+||.||||||++|+.+.|.|+++|+.+.+ .+.++.|||+.+. ++. ++
T Consensus 346 ~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~----~~~-~~---- 416 (462)
T TIGR01130 346 GPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND----VPP-FE---- 416 (462)
T ss_pred CccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc----cCC-CC----
Confidence 458899999999988 6789999999999999999999999999999988 4689999999653 233 55
Q ss_pred cccccccEEEEcCCCCCCCCccccccCCcCHHHHHHHHHHH
Q 005374 212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (699)
Q Consensus 212 f~V~gyPTl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~ 252 (699)
|+++||+++|++|... .+..|.|.++.++|++|+.+.
T Consensus 417 --i~~~Pt~~~~~~~~~~--~~~~~~g~~~~~~l~~~l~~~ 453 (462)
T TIGR01130 417 --VEGFPTIKFVPAGKKS--EPVPYDGDRTLEDFSKFIAKH 453 (462)
T ss_pred --ccccCEEEEEeCCCCc--CceEecCcCCHHHHHHHHHhc
Confidence 7799999999988653 356899999999999999887
No 102
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.29 E-value=2e-12 Score=147.19 Aligned_cols=67 Identities=28% Similarity=0.537 Sum_probs=62.5
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhcccCcCCchh
Q 005374 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (699)
Q Consensus 37 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~ 103 (699)
.|||+||||+++|+.++||+|||+|+++||||+++ .+.++|++|++||++|+||.+|+.||.||..+
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG 70 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDG 70 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccc
Confidence 59999999999999999999999999999999976 45667999999999999999999999999765
No 103
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.28 E-value=5.2e-12 Score=108.23 Aligned_cols=91 Identities=16% Similarity=0.300 Sum_probs=78.0
Q ss_pred CCcccccCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEEEcC
Q 005374 145 DFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFP 224 (699)
Q Consensus 145 nF~~~v~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~f~ 224 (699)
+|++.+..+++++|.||++||++|..+.+.++++++. .+...++.|||+.+.. ++++++ |.++||+++|.
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~---~~~~~~------v~~~P~~~~~~ 71 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPE---LAEEYG------VRSIPTFLFFK 71 (93)
T ss_pred chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChh---HHHhcC------cccccEEEEEE
Confidence 5777776669999999999999999999999999988 5667999999996544 888988 66999999999
Q ss_pred CCCCCCCccccccCCcCHHHHHHHH
Q 005374 225 PGCKSSDCMTRFEGELSVDAVTDWF 249 (699)
Q Consensus 225 ~g~~~~~~~~~Y~G~rs~~~Iv~fi 249 (699)
+|.. ...|.|..+.+.|.+|+
T Consensus 72 ~g~~----~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 72 NGKE----VDRVVGADPKEELEEFL 92 (93)
T ss_pred CCEE----EEEEecCCCHHHHHHHh
Confidence 8863 36678888889999886
No 104
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.26 E-value=2.6e-12 Score=113.24 Aligned_cols=93 Identities=16% Similarity=0.246 Sum_probs=73.6
Q ss_pred CCCCcccccC--CCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEE
Q 005374 143 SEDFPSIFHD--SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL 220 (699)
Q Consensus 143 ~~nF~~~v~~--~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl 220 (699)
.++|++.+.. +++++|.||+|||++|+++.|.++++++.+.+.+.+.+||++++.. ++++++ |+++||+
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~---~~~~~~------i~~~Pt~ 72 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPE---ISEKFE------ITAVPTF 72 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHH---HHHhcC------CccccEE
Confidence 3567777743 4999999999999999999999999999986667999999995544 899998 6699999
Q ss_pred EEcCCCCCCCCccccccCCcCHHHHHHHH
Q 005374 221 VAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (699)
Q Consensus 221 ~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi 249 (699)
++|.+|... ..+.| ...+.|.+.+
T Consensus 73 ~~~~~g~~~----~~~~g-~~~~~l~~~~ 96 (97)
T cd02984 73 VFFRNGTIV----DRVSG-ADPKELAKKV 96 (97)
T ss_pred EEEECCEEE----EEEeC-CCHHHHHHhh
Confidence 999988532 33445 4566666544
No 105
>PTZ00051 thioredoxin; Provisional
Probab=99.24 E-value=4.6e-12 Score=111.99 Aligned_cols=92 Identities=15% Similarity=0.298 Sum_probs=73.6
Q ss_pred EEec-CCCCcccccCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccc
Q 005374 139 NVVT-SEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL 217 (699)
Q Consensus 139 ~~Lt-~~nF~~~v~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gy 217 (699)
.+++ .++|...++.+++++|.||++||++|+++.|.|+++++.+.+ +.++.|||+++.. ++++++ |.++
T Consensus 3 ~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~---~~~~~~------v~~~ 72 (98)
T PTZ00051 3 HIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK-MVFVKVDVDELSE---VAEKEN------ITSM 72 (98)
T ss_pred EEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC-cEEEEEECcchHH---HHHHCC------Ccee
Confidence 4444 356777778889999999999999999999999999998754 5899999995544 899998 6799
Q ss_pred cEEEEcCCCCCCCCccccccCCcCHHHH
Q 005374 218 PSLVAFPPGCKSSDCMTRFEGELSVDAV 245 (699)
Q Consensus 218 PTl~~f~~g~~~~~~~~~Y~G~rs~~~I 245 (699)
||+++|.+|... ..+.|. ..+.|
T Consensus 73 Pt~~~~~~g~~~----~~~~G~-~~~~~ 95 (98)
T PTZ00051 73 PTFKVFKNGSVV----DTLLGA-NDEAL 95 (98)
T ss_pred eEEEEEeCCeEE----EEEeCC-CHHHh
Confidence 999999988642 456674 44444
No 106
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.23 E-value=1.1e-11 Score=109.90 Aligned_cols=86 Identities=12% Similarity=0.158 Sum_probs=75.9
Q ss_pred cCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEEEcCCCCCCC
Q 005374 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSS 230 (699)
Q Consensus 151 ~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~f~~g~~~~ 230 (699)
+.+++++|.||++||+.|+.+.|.++++++.+.+.+.++.||+++++. ++++++ |.++||+++|.+|..
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~---l~~~~~------v~~vPt~~i~~~g~~-- 79 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQE---IAEAAG------IMGTPTVQFFKDKEL-- 79 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHH---HHHHCC------CeeccEEEEEECCeE--
Confidence 578899999999999999999999999999998767899999996554 889988 779999999988754
Q ss_pred CccccccCCcCHHHHHHHH
Q 005374 231 DCMTRFEGELSVDAVTDWF 249 (699)
Q Consensus 231 ~~~~~Y~G~rs~~~Iv~fi 249 (699)
...+.|..+.+.|.+|+
T Consensus 80 --v~~~~g~~~~~~~~~~l 96 (97)
T cd02949 80 --VKEISGVKMKSEYREFI 96 (97)
T ss_pred --EEEEeCCccHHHHHHhh
Confidence 46778999999999886
No 107
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.4e-11 Score=123.89 Aligned_cols=65 Identities=34% Similarity=0.620 Sum_probs=60.7
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCC----hHHHHHHHHHHHHHcCChhhhcccCcCC
Q 005374 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPLWKRNYDVYG 100 (699)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~f~~I~~Ay~vL~d~~~R~~YD~~g 100 (699)
..+||+||||+++|+..+|+++||+++++||||+++. +.++|..|++||++|+|+..|+.||.++
T Consensus 5 ~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 3589999999999999999999999999999999874 4588999999999999999999999985
No 108
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=2.4e-11 Score=109.87 Aligned_cols=84 Identities=13% Similarity=0.199 Sum_probs=68.8
Q ss_pred CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEEEcCCCCCCCC
Q 005374 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSD 231 (699)
Q Consensus 152 ~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~f~~g~~~~~ 231 (699)
.+++++|.|||+|||.|+.++|.++++|.++.. +.|.+||+++ ...+|++++ |+..||+++|++|...
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde---~~~~~~~~~------V~~~PTf~f~k~g~~~-- 87 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDE---LEEVAKEFN------VKAMPTFVFYKGGEEV-- 87 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEeccc---CHhHHHhcC------ceEeeEEEEEECCEEE--
Confidence 468999999999999999999999999999998 8999999997 334899988 7799999999999753
Q ss_pred ccccccCCcCHHHHHHHHH
Q 005374 232 CMTRFEGELSVDAVTDWFA 250 (699)
Q Consensus 232 ~~~~Y~G~rs~~~Iv~fi~ 250 (699)
..+-|.-. +.+.+.+.
T Consensus 88 --~~~vGa~~-~~l~~~i~ 103 (106)
T KOG0907|consen 88 --DEVVGANK-AELEKKIA 103 (106)
T ss_pred --EEEecCCH-HHHHHHHH
Confidence 45555443 25554443
No 109
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.17 E-value=1.7e-11 Score=116.17 Aligned_cols=97 Identities=11% Similarity=0.063 Sum_probs=75.8
Q ss_pred CCCCcccc--cCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEE
Q 005374 143 SEDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL 220 (699)
Q Consensus 143 ~~nF~~~v--~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl 220 (699)
...|++.| ..+++++|.|||+||++|+.+.|.++++|+++.+...|.+||+++++. ++++|+ |++.||+
T Consensus 11 ~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~d---la~~y~------I~~~~t~ 81 (142)
T PLN00410 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPD---FNTMYE------LYDPCTV 81 (142)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHH---HHHHcC------ccCCCcE
Confidence 45677777 367899999999999999999999999999999888999999997666 999998 6688776
Q ss_pred E-EcCCCCCCCCccccccC--------CcCHHHHHHHHHH
Q 005374 221 V-AFPPGCKSSDCMTRFEG--------ELSVDAVTDWFAT 251 (699)
Q Consensus 221 ~-~f~~g~~~~~~~~~Y~G--------~rs~~~Iv~fi~k 251 (699)
+ +|++|... .....| ..+.+.|++-+..
T Consensus 82 ~~ffk~g~~~---vd~~tG~~~k~~~~~~~k~~l~~~i~~ 118 (142)
T PLN00410 82 MFFFRNKHIM---IDLGTGNNNKINWALKDKQEFIDIVET 118 (142)
T ss_pred EEEEECCeEE---EEEecccccccccccCCHHHHHHHHHH
Confidence 6 88888622 233456 3455555554443
No 110
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.17 E-value=3.4e-11 Score=110.30 Aligned_cols=95 Identities=12% Similarity=0.140 Sum_probs=77.3
Q ss_pred CcccccCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEEEcCC
Q 005374 146 FPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPP 225 (699)
Q Consensus 146 F~~~v~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~f~~ 225 (699)
|...+.....++|.||++||++|+.+.|.+++++... +.+.+..||+++++. ++++++ |+++||+++|.+
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~---l~~~~~------v~~vPt~~i~~~ 84 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKE---KAEKYG------VERVPTTIFLQD 84 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHH---HHHHcC------CCcCCEEEEEeC
Confidence 4444555667889999999999999999999999886 556899999996654 999998 679999999998
Q ss_pred CCCCCCccccccCCcCHHHHHHHHHHH
Q 005374 226 GCKSSDCMTRFEGELSVDAVTDWFATA 252 (699)
Q Consensus 226 g~~~~~~~~~Y~G~rs~~~Iv~fi~k~ 252 (699)
|... ....|.|..+...+.+|+...
T Consensus 85 g~~~--~~~~~~G~~~~~el~~~i~~i 109 (113)
T cd02975 85 GGKD--GGIRYYGLPAGYEFASLIEDI 109 (113)
T ss_pred Ceec--ceEEEEecCchHHHHHHHHHH
Confidence 7543 223688988888999888764
No 111
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.14 E-value=3.1e-11 Score=119.04 Aligned_cols=81 Identities=15% Similarity=0.246 Sum_probs=70.2
Q ss_pred eEEEecC-CCCccccc-C--CCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCccc
Q 005374 137 AFNVVTS-EDFPSIFH-D--SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF 212 (699)
Q Consensus 137 ~V~~Lt~-~nF~~~v~-~--~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f 212 (699)
.|..++. .+|...|. + +.+++|.||+|||+.|+.+.|.++++|..+. .++|.+||+++. .++.+++
T Consensus 63 ~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~----~l~~~f~----- 132 (175)
T cd02987 63 KVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT----GASDEFD----- 132 (175)
T ss_pred eEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch----hhHHhCC-----
Confidence 5788998 99999884 2 3499999999999999999999999999984 469999999953 4888888
Q ss_pred ccccccEEEEcCCCCC
Q 005374 213 FRRGLPSLVAFPPGCK 228 (699)
Q Consensus 213 ~V~gyPTl~~f~~g~~ 228 (699)
|+++|||++|.+|..
T Consensus 133 -v~~vPTlllyk~G~~ 147 (175)
T cd02987 133 -TDALPALLVYKGGEL 147 (175)
T ss_pred -CCCCCEEEEEECCEE
Confidence 779999999999864
No 112
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.14 E-value=4.5e-11 Score=111.06 Aligned_cols=104 Identities=16% Similarity=0.120 Sum_probs=81.6
Q ss_pred EEEecCCCCcccccCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchh--------hhhHHHHhCCCC
Q 005374 138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR--------LATHLAERKPIG 209 (699)
Q Consensus 138 V~~Lt~~nF~~~v~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~--------~~~~L~~k~~i~ 209 (699)
+..+|.++|.+.+.+++..+|.||++||++|+.+.|.+++++++ ....|..||.+.+. ....+.+++++.
T Consensus 8 ~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~ 85 (122)
T TIGR01295 8 LEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIP 85 (122)
T ss_pred ceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCc
Confidence 36688888998898899999999999999999999999999998 33579999988432 223466776632
Q ss_pred cccccccccEEEEcCCCCCCCCccccccC-CcCHHHHHHHH
Q 005374 210 QIFFRRGLPSLVAFPPGCKSSDCMTRFEG-ELSVDAVTDWF 249 (699)
Q Consensus 210 ~~f~V~gyPTl~~f~~g~~~~~~~~~Y~G-~rs~~~Iv~fi 249 (699)
+.|.+.||+++|.+|... ....| ..+.+.|.+|+
T Consensus 86 --~~i~~~PT~v~~k~Gk~v----~~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 86 --TSFMGTPTFVHITDGKQV----SVRCGSSTTAQELQDIA 120 (122)
T ss_pred --ccCCCCCEEEEEeCCeEE----EEEeCCCCCHHHHHHHh
Confidence 347789999999999653 44566 55788888876
No 113
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.13 E-value=7.2e-11 Score=105.23 Aligned_cols=88 Identities=19% Similarity=0.253 Sum_probs=74.7
Q ss_pred CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccc--cccEEEEcCC--CC
Q 005374 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR--GLPSLVAFPP--GC 227 (699)
Q Consensus 152 ~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~--gyPTl~~f~~--g~ 227 (699)
.+.+++|.||++||++|..+.|.++++|+++++.+.|+.||+++++. +++.++ |. ++|++++|.+ |.
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~---~~~~~~------i~~~~~P~~~~~~~~~~~ 81 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGR---HLEYFG------LKEEDLPVIAIINLSDGK 81 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHH---HHHHcC------CChhhCCEEEEEeccccc
Confidence 36899999999999999999999999999999989999999996554 899988 77 9999999998 43
Q ss_pred CCCCccccccCCcCHHHHHHHHHHH
Q 005374 228 KSSDCMTRFEGELSVDAVTDWFATA 252 (699)
Q Consensus 228 ~~~~~~~~Y~G~rs~~~Iv~fi~k~ 252 (699)
. +....|..+.++|.+|+.+.
T Consensus 82 k----~~~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 82 K----YLMPEEELTAESLEEFVEDF 102 (103)
T ss_pred c----cCCCccccCHHHHHHHHHhh
Confidence 3 22224556999999999764
No 114
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.09 E-value=9.2e-11 Score=114.45 Aligned_cols=62 Identities=16% Similarity=0.275 Sum_probs=55.1
Q ss_pred cCcccccCcCCC--CCHHHHHHHHHHHHHhcCCCCCCChHH------HHHHHHHHHHHcCChhhhcccCc
Q 005374 37 PSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIPSTA------DFLKIQYAYELLTDPLWKRNYDV 98 (699)
Q Consensus 37 ~d~Y~vLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~~~~------~f~~I~~Ay~vL~d~~~R~~YD~ 98 (699)
.|||++|||++. ++..+|+++||+|++++|||++....+ .+..|++||++|+||.+|+.|+.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL 71 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYML 71 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 489999999987 789999999999999999999764333 36799999999999999999974
No 115
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.07 E-value=1.5e-10 Score=113.67 Aligned_cols=62 Identities=15% Similarity=0.303 Sum_probs=54.6
Q ss_pred cCcccccCcCCC--CCHHHHHHHHHHHHHhcCCCCCCC--------hHHHHHHHHHHHHHcCChhhhcccCc
Q 005374 37 PSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIP--------STADFLKIQYAYELLTDPLWKRNYDV 98 (699)
Q Consensus 37 ~d~Y~vLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~--------~~~~f~~I~~Ay~vL~d~~~R~~YD~ 98 (699)
.|||++|||++. ++..+|+++||+|++++|||+... +.+.+..|++||++|+||.+|+.|+.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll 72 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL 72 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence 389999999996 678999999999999999998542 23468999999999999999999983
No 116
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.05 E-value=7.9e-11 Score=107.02 Aligned_cols=75 Identities=15% Similarity=0.203 Sum_probs=65.8
Q ss_pred CCccccc--CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEEE
Q 005374 145 DFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA 222 (699)
Q Consensus 145 nF~~~v~--~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~ 222 (699)
.|++.|. .+++++|.|+|+||+.|+.+.|.++++|+++++.+.|.+||.++.+. ++++|+ |...||+++
T Consensus 4 ~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~d---va~~y~------I~amPtfvf 74 (114)
T cd02986 4 EVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPV---YTQYFD------ISYIPSTIF 74 (114)
T ss_pred HHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHH---HHHhcC------ceeCcEEEE
Confidence 4555662 58999999999999999999999999999998778999999996665 999998 669999999
Q ss_pred cCCCCC
Q 005374 223 FPPGCK 228 (699)
Q Consensus 223 f~~g~~ 228 (699)
|.+|..
T Consensus 75 fkngkh 80 (114)
T cd02986 75 FFNGQH 80 (114)
T ss_pred EECCcE
Confidence 999864
No 117
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.04 E-value=5.5e-10 Score=95.24 Aligned_cols=80 Identities=11% Similarity=0.091 Sum_probs=67.9
Q ss_pred EEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEEEcCCCCCCCCcccc
Q 005374 156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTR 235 (699)
Q Consensus 156 ~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~f~~g~~~~~~~~~ 235 (699)
.++.||+|||++|+.+.|.++++++.+.+.+.+..||+++++. ++++++ |+++||+++ +|. ..
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~---~~~~~~------v~~vPt~~~--~g~------~~ 64 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQ---KAMEYG------IMAVPAIVI--NGD------VE 64 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHH---HHHHcC------CccCCEEEE--CCE------EE
Confidence 4678999999999999999999999998777899999996554 888888 779999986 553 36
Q ss_pred ccCCcCHHHHHHHHHHH
Q 005374 236 FEGELSVDAVTDWFATA 252 (699)
Q Consensus 236 Y~G~rs~~~Iv~fi~k~ 252 (699)
+.|..+.+.|.+++.+.
T Consensus 65 ~~G~~~~~~l~~~l~~~ 81 (82)
T TIGR00411 65 FIGAPTKEELVEAIKKR 81 (82)
T ss_pred EecCCCHHHHHHHHHhh
Confidence 78999999999988764
No 118
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=99.03 E-value=3e-09 Score=99.98 Aligned_cols=117 Identities=23% Similarity=0.288 Sum_probs=89.2
Q ss_pred ccccccchhhhhhccCcCCCCCCCCCccceEEEEEeccC-----ChhHHHHHHHHHHHHHhhccCcccccccccccchhH
Q 005374 377 ELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRL-----SPELNKMRETIRRVQETLLSDDESNAADTDQSLAPA 451 (699)
Q Consensus 377 ~vp~Lts~s~~~~~c~~~~~~~~~~~~~~~lCvI~~~~~-----~~~~~~~~~~lr~~a~~l~~~~~~~~~~~~~~~~~~ 451 (699)
++.+|++++.++..|.. + .+|+|++... .++.+++++.++++|+
T Consensus 3 ~~~~l~~~~~~~~~C~~-------~----~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk-------------------- 51 (130)
T cd02983 3 EIIELTSEDVFEETCEE-------K----QLCIIAFLPHILDCQASCRNKYLEILKSVAE-------------------- 51 (130)
T ss_pred ceEEecCHHHHHhhccC-------C----CeEEEEEcCccccCCHHHHHHHHHHHHHHHH--------------------
Confidence 78999999999988843 1 5999999752 2456788888888888
Q ss_pred HHhcCCCeEEEEEEeCcchHHHHHHhc-cccccccccCCcCCCCCCCeEEEEEeecCCccccceeecccccccccccccc
Q 005374 452 AVAFRNKRLTFAWLDGEAQDRYCSFYL-FSETSFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQE 530 (699)
Q Consensus 452 a~~~k~~~l~F~wvd~~~q~~f~~~fl-~~~~~~~~c~~~~~~~~~p~lvI~~~rr~~~~~~~~~~~~~~~~l~~~~~~~ 530 (699)
+|+++.+.|+|+|++.|..++++|. ..+. .|.++++ |... .||. +
T Consensus 52 --~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~-------------~P~v~i~----~~~~--~KY~------~------- 97 (130)
T cd02983 52 --KFKKKPWGWLWTEAGAQLDLEEALNIGGFG-------------YPAMVAI----NFRK--MKFA------T------- 97 (130)
T ss_pred --HhcCCcEEEEEEeCcccHHHHHHcCCCccC-------------CCEEEEE----eccc--Cccc------c-------
Confidence 8999889999999999999999983 3322 3889988 5543 3766 2
Q ss_pred CCccccchhccCCCCChHHHHHHHHHHhcCCCCCCCCcc
Q 005374 531 VDPASQLVVRYNGSDEIPQIAKWVSEIIQDGDSKDLPFY 569 (699)
Q Consensus 531 ~~~~~~~~~~~~g~~~~~~i~~~i~~~~~~g~~~~l~~~ 569 (699)
+.|+-+.+.|.+|+++++. |....+++.
T Consensus 98 ----------~~~~~t~e~i~~Fv~~~l~-Gkl~~~~~~ 125 (130)
T cd02983 98 ----------LKGSFSEDGINEFLRELSY-GRGPTLPVN 125 (130)
T ss_pred ----------ccCccCHHHHHHHHHHHHc-CCcccccCC
Confidence 2344477999999999998 666566643
No 119
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.02 E-value=1.9e-10 Score=115.14 Aligned_cols=79 Identities=14% Similarity=0.227 Sum_probs=67.5
Q ss_pred eEEEecCCCCcccc-cC--CCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccc
Q 005374 137 AFNVVTSEDFPSIF-HD--SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF 213 (699)
Q Consensus 137 ~V~~Lt~~nF~~~v-~~--~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~ 213 (699)
.|..+|..+|...| .+ +.+++|.||++||++|+.+.|.|+++|..+. .++|.+||++ . ++.+|+
T Consensus 83 ~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad---~---~~~~~~------ 149 (192)
T cd02988 83 EVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIIST---Q---CIPNYP------ 149 (192)
T ss_pred eEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhH---H---hHhhCC------
Confidence 57899999998877 33 3589999999999999999999999999985 4699999988 3 356677
Q ss_pred cccccEEEEcCCCCC
Q 005374 214 RRGLPSLVAFPPGCK 228 (699)
Q Consensus 214 V~gyPTl~~f~~g~~ 228 (699)
|+++|||++|++|..
T Consensus 150 i~~lPTlliyk~G~~ 164 (192)
T cd02988 150 DKNLPTILVYRNGDI 164 (192)
T ss_pred CCCCCEEEEEECCEE
Confidence 779999999999964
No 120
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.01 E-value=2.7e-10 Score=122.12 Aligned_cols=69 Identities=30% Similarity=0.476 Sum_probs=63.2
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCC--------hHHHHHHHHHHHHHcCChhhhcccCcCCchhh
Q 005374 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP--------STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (699)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~--------~~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~~ 104 (699)
.-|||+|||++.+++..+||++||+|+.++||||-+. .++.+.+|++||+.|+|...|..|-.||..+.
T Consensus 97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~ 173 (610)
T COG5407 97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDS 173 (610)
T ss_pred CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCC
Confidence 5599999999999999999999999999999998653 36679999999999999999999999998764
No 121
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.01 E-value=3.9e-10 Score=111.04 Aligned_cols=64 Identities=17% Similarity=0.284 Sum_probs=55.3
Q ss_pred CccCcccccCcCCC--CCHHHHHHHHHHHHHhcCCCCCCC--h------HHHHHHHHHHHHHcCChhhhcccCc
Q 005374 35 FPPSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIP--S------TADFLKIQYAYELLTDPLWKRNYDV 98 (699)
Q Consensus 35 ~~~d~Y~vLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~--~------~~~f~~I~~Ay~vL~d~~~R~~YD~ 98 (699)
+..|||++|||++. ++..+|+++||+|+++||||++.. . .+.+..||+||++|+||.+|+.|+.
T Consensus 4 ~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 4 LKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL 77 (176)
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 35799999999985 678999999999999999998652 2 2236899999999999999999994
No 122
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=98.98 E-value=5.6e-10 Score=109.52 Aligned_cols=63 Identities=16% Similarity=0.354 Sum_probs=55.8
Q ss_pred ccCcccccCcCCC--CCHHHHHHHHHHHHHhcCCCCCCC--------hHHHHHHHHHHHHHcCChhhhcccCc
Q 005374 36 PPSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIP--------STADFLKIQYAYELLTDPLWKRNYDV 98 (699)
Q Consensus 36 ~~d~Y~vLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~--------~~~~f~~I~~Ay~vL~d~~~R~~YD~ 98 (699)
..|||++||+++. .+..+|+++||+|++++|||++.+ +.+.+..||+||++|+||.+|+.|+.
T Consensus 3 ~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 3 TPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL 75 (173)
T ss_pred CCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 4699999999987 557999999999999999998653 23459999999999999999999994
No 123
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=98.96 E-value=6.3e-10 Score=101.18 Aligned_cols=52 Identities=27% Similarity=0.296 Sum_probs=48.5
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcC
Q 005374 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLT 88 (699)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~I~~Ay~vL~ 88 (699)
..++|++|||+++++.+|||++||+|++++|||++ ++.+.|.+|++||++|.
T Consensus 64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg-Gs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNG-GSTYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999999999985 67889999999999985
No 124
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=8.3e-10 Score=111.12 Aligned_cols=104 Identities=17% Similarity=0.228 Sum_probs=81.4
Q ss_pred EEEec-CCCCccccc--CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCccccc
Q 005374 138 FNVVT-SEDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFR 214 (699)
Q Consensus 138 V~~Lt-~~nF~~~v~--~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V 214 (699)
|.+++ +..|...+. ..+.++|.|||.|||.|++++|.|+.+|.++.+ ..+.+||.++-+. .|.-+| |
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-aVFlkVdVd~c~~---taa~~g------V 72 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-AVFLKVDVDECRG---TAATNG------V 72 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc-cEEEEEeHHHhhc---hhhhcC------c
Confidence 34443 567888883 567999999999999999999999999999955 4799999984333 556666 7
Q ss_pred ccccEEEEcCCCCCCCCccccccCCcCHHHHHHHHHHHhccC
Q 005374 215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKL 256 (699)
Q Consensus 215 ~gyPTl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~v~~l 256 (699)
+..||+++|++|.+. ..+.| -++.+|.+-+.+++..-
T Consensus 73 ~amPTFiff~ng~ki----d~~qG-Ad~~gLe~kv~~~~sts 109 (288)
T KOG0908|consen 73 NAMPTFIFFRNGVKI----DQIQG-ADASGLEEKVAKYASTS 109 (288)
T ss_pred ccCceEEEEecCeEe----eeecC-CCHHHHHHHHHHHhccC
Confidence 799999999999764 45566 56888888888875433
No 125
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.96 E-value=6.9e-10 Score=102.94 Aligned_cols=95 Identities=18% Similarity=0.287 Sum_probs=73.4
Q ss_pred cccCC-CcEEEEEeccCCCCCCCcchHHH---HHHHHhhcccceeeeeccchh----------hhhHHHHhCCCCccccc
Q 005374 149 IFHDS-KPWLIQVYSDGSYLCGQFSGAWK---TIAALLEGIANTGMVELGDIR----------LATHLAERKPIGQIFFR 214 (699)
Q Consensus 149 ~v~~~-~~~lV~FYapwC~hCk~l~p~~~---~~A~~L~g~~~va~Vdc~~~~----------~~~~L~~k~~i~~~f~V 214 (699)
+..++ ++++|.|||+||++|+++.|.+. ++...+...+.+..||.+++. ....++.+++ |
T Consensus 9 a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~------v 82 (125)
T cd02951 9 AAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYR------V 82 (125)
T ss_pred HHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcC------C
Confidence 44577 89999999999999999999885 566667655577888887431 1235888888 6
Q ss_pred ccccEEEEcCCC-CCCCCccccccCCcCHHHHHHHHHHH
Q 005374 215 RGLPSLVAFPPG-CKSSDCMTRFEGELSVDAVTDWFATA 252 (699)
Q Consensus 215 ~gyPTl~~f~~g-~~~~~~~~~Y~G~rs~~~Iv~fi~k~ 252 (699)
+++||+++|.++ +. ....+.|..+.+.+..++...
T Consensus 83 ~~~Pt~~~~~~~gg~---~~~~~~G~~~~~~~~~~l~~~ 118 (125)
T cd02951 83 RFTPTVIFLDPEGGK---EIARLPGYLPPDEFLAYLEYV 118 (125)
T ss_pred ccccEEEEEcCCCCc---eeEEecCCCCHHHHHHHHHHH
Confidence 799999999875 33 245678988888888888765
No 126
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=6e-10 Score=120.49 Aligned_cols=65 Identities=25% Similarity=0.387 Sum_probs=61.1
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhcccCcCC
Q 005374 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYG 100 (699)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~I~~Ay~vL~d~~~R~~YD~~g 100 (699)
..|+|.+|||+.+++.++||+.||++|...|||||. .++|.|+.++.||++|+|+++|..||.--
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~ 300 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLEL 300 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 679999999999999999999999999999999876 67889999999999999999999999644
No 127
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=6.1e-10 Score=117.23 Aligned_cols=69 Identities=35% Similarity=0.561 Sum_probs=62.4
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCCh----HHHHHHHHHHHHHcCChhhhcccCcCCchhh
Q 005374 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPS----TADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (699)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~----~~~f~~I~~Ay~vL~d~~~R~~YD~~g~~~~ 104 (699)
..|+|++|||.++|+.++|++||++++++||||+|+.. ..+|.+|.+||++|+|+.+|..||++|.++.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~ 74 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGL 74 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCcccc
Confidence 46999999999999999999999999999999998743 3469999999999999999999999998543
No 128
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.90 E-value=5.5e-08 Score=95.48 Aligned_cols=169 Identities=14% Similarity=0.229 Sum_probs=123.1
Q ss_pred cchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEEEcCCCCCCCCccccccCC-cCHHHHHHHH
Q 005374 171 FSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGE-LSVDAVTDWF 249 (699)
Q Consensus 171 l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~f~~g~~~~~~~~~Y~G~-rs~~~Iv~fi 249 (699)
+...|.++|+.+.+...++.+.-. . +|++++ |.. |+|++|+++.. .+..|.|. .+.+.|.+|+
T Consensus 8 ~~~~f~~~A~~~~~~~~F~~~~~~---~---~~~~~~------~~~-p~i~~~k~~~~---~~~~y~~~~~~~~~l~~fI 71 (184)
T PF13848_consen 8 LFEIFEEAAEKLKGDYQFGVTFNE---E---LAKKYG------IKE-PTIVVYKKFDE---KPVVYDGDKFTPEELKKFI 71 (184)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEE-H---H---HHHHCT------CSS-SEEEEEECTTT---SEEEESSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCcEEEEEcHH---H---HHHHhC------CCC-CcEEEeccCCC---CceecccccCCHHHHHHHH
Confidence 456899999999988888888733 3 888888 447 99999998543 36789998 8999999999
Q ss_pred HHHhccCCcceecccchhhhhhhhhcCCCcEEEEEEcCCCC----CchHHHHHHHHhccCCceEEEEEccccccHhHHhh
Q 005374 250 ATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGE----RASPFVRQISRNYWAYASFAFVLWREEESSIWWNT 325 (699)
Q Consensus 250 ~k~v~~lP~~~~it~~~~~~~Fl~~~~~~~v~vl~f~~~~~----~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~k 325 (699)
... .+|.+..++..+ +..+.... ..+.+++|.++.. .....++.+|..+++.+.|+.+.... ...+++.
T Consensus 72 ~~~--~~P~v~~~t~~n-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~--~~~~~~~ 144 (184)
T PF13848_consen 72 KKN--SFPLVPELTPEN-FEKLFSSP--KPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADD--FPRLLKY 144 (184)
T ss_dssp HHH--SSTSCEEESTTH-HHHHHSTS--SEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTT--THHHHHH
T ss_pred HHh--ccccccccchhh-HHHHhcCC--CceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHH--hHHHHHH
Confidence 998 689887787665 56665532 2234555543211 12233456889999999999987542 3678999
Q ss_pred cCCC--CCCEEEEEcCCCCC-ceeecCCCChhHHHHHHHH
Q 005374 326 FEVE--SAPAIVFLKDPGVK-PVVYYGSFNNSRLSEVMEQ 362 (699)
Q Consensus 326 f~V~--~~PtIvlfk~~~~~-pv~y~g~~~~~~L~~fi~~ 362 (699)
||++ ..|+++++...... ...+.++++.+.|.+|++.
T Consensus 145 ~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 145 FGIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp TTTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred cCCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 9998 69999999854433 2223788999999999863
No 129
>PTZ00062 glutaredoxin; Provisional
Probab=98.84 E-value=1.6e-08 Score=101.90 Aligned_cols=162 Identities=9% Similarity=-0.013 Sum_probs=100.9
Q ss_pred CCCCcccccC-CCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEE
Q 005374 143 SEDFPSIFHD-SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLV 221 (699)
Q Consensus 143 ~~nF~~~v~~-~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~ 221 (699)
.+.|.+.+.+ ....++.|+|+||+.|+++.|..+++++++. .+.|..||++ ++ |.++||++
T Consensus 6 ~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-~~~F~~V~~d-----------~~------V~~vPtfv 67 (204)
T PTZ00062 6 KEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP-SLEFYVVNLA-----------DA------NNEYGVFE 67 (204)
T ss_pred HHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC-CcEEEEEccc-----------cC------cccceEEE
Confidence 3456666653 3778999999999999999999999999984 4789999976 45 77999999
Q ss_pred EcCCCCCCCCccccccCCcCHHHHHHHHHHHhccCCcceecccchhhhhhhhhcCCCcEEEEEEcC--C-CCCch-HHHH
Q 005374 222 AFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSK--T-GERAS-PFVR 297 (699)
Q Consensus 222 ~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~v~~lP~~~~it~~~~~~~Fl~~~~~~~v~vl~f~~--~-~~~~~-~~~~ 297 (699)
+|.+|... .++.|. ++..|..++.+.....+.. .+..++...-...+.+||... . ..|.. -..+
T Consensus 68 ~~~~g~~i----~r~~G~-~~~~~~~~~~~~~~~~~~~-------~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k 135 (204)
T PTZ00062 68 FYQNSQLI----NSLEGC-NTSTLVSFIRGWAQKGSSE-------DTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVV 135 (204)
T ss_pred EEECCEEE----eeeeCC-CHHHHHHHHHHHcCCCCHH-------HHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHH
Confidence 99999753 566664 4889999998874322211 123333332122233444321 1 12221 1122
Q ss_pred HHHHhccCCceEEEEEcccccc--HhHHhhcCCCCCCEEEE
Q 005374 298 QISRNYWAYASFAFVLWREEES--SIWWNTFEVESAPAIVF 336 (699)
Q Consensus 298 ~~A~~~~~~~~Fg~V~~~~~~s--~~l~~kf~V~~~PtIvl 336 (699)
.+-.++ .+.|..+....... +.+.+.-|-..+|.|++
T Consensus 136 ~~L~~~--~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI 174 (204)
T PTZ00062 136 NMLNSS--GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV 174 (204)
T ss_pred HHHHHc--CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE
Confidence 232322 46677776543221 33444555566788765
No 130
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.82 E-value=1.9e-09 Score=99.47 Aligned_cols=79 Identities=15% Similarity=0.182 Sum_probs=63.2
Q ss_pred CCCCcccccC--CCcEEEEEec-------cCCCCCCCcchHHHHHHHHhhcccceeeeeccchh----hhhHHHHhCCCC
Q 005374 143 SEDFPSIFHD--SKPWLIQVYS-------DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR----LATHLAERKPIG 209 (699)
Q Consensus 143 ~~nF~~~v~~--~~~~lV~FYa-------pwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~----~~~~L~~k~~i~ 209 (699)
.++|.+.|.+ +++++|.||| +||++|+.+.|.+++++..+.+.+.+.+||+++++ ....++.+++
T Consensus 9 ~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~-- 86 (119)
T cd02952 9 YEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPK-- 86 (119)
T ss_pred HHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccC--
Confidence 3456666643 6899999999 99999999999999999999866789999998532 1123667666
Q ss_pred cccccc-cccEEEEcCCCC
Q 005374 210 QIFFRR-GLPSLVAFPPGC 227 (699)
Q Consensus 210 ~~f~V~-gyPTl~~f~~g~ 227 (699)
|+ ++||+++|..|.
T Consensus 87 ----I~~~iPT~~~~~~~~ 101 (119)
T cd02952 87 ----LTTGVPTLLRWKTPQ 101 (119)
T ss_pred ----cccCCCEEEEEcCCc
Confidence 88 999999997764
No 131
>PHA02624 large T antigen; Provisional
Probab=98.82 E-value=3.2e-09 Score=120.42 Aligned_cols=60 Identities=12% Similarity=0.232 Sum_probs=57.1
Q ss_pred ccCcccccCcCCCC--CHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChhhhccc
Q 005374 36 PPSHYDALGIKPYS--SVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNY 96 (699)
Q Consensus 36 ~~d~Y~vLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~~~~f~~I~~Ay~vL~d~~~R~~Y 96 (699)
..++|++|||+++| +.++||+|||+++++||||++ ++.++|++|++||++|+|+.+|..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg-Gdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG-GDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC-CcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 56899999999999 999999999999999999996 6788999999999999999999999
No 132
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=98.78 E-value=4.1e-09 Score=110.68 Aligned_cols=53 Identities=26% Similarity=0.439 Sum_probs=48.3
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC----------ChHHHHHHHHHHHHHcCC
Q 005374 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI----------PSTADFLKIQYAYELLTD 89 (699)
Q Consensus 37 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~----------~~~~~f~~I~~Ay~vL~d 89 (699)
.++|+||||++++|.++||++||+|+++||||++. .++++|++|++||++|+.
T Consensus 200 ~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 200 EDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999852 145789999999999985
No 133
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=4.3e-09 Score=112.82 Aligned_cols=64 Identities=28% Similarity=0.472 Sum_probs=59.4
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCCh----HHHHHHHHHHHHHcCChhhhcccCcC
Q 005374 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPS----TADFLKIQYAYELLTDPLWKRNYDVY 99 (699)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~----~~~f~~I~~Ay~vL~d~~~R~~YD~~ 99 (699)
..|||.|||+.+.++..+||+|||++++.||||++.++ +.+|+++-+||.+|+||.+|..||.-
T Consensus 372 Rkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg 439 (486)
T KOG0550|consen 372 RKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSG 439 (486)
T ss_pred hhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence 67999999999999999999999999999999998743 55699999999999999999999964
No 134
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.71 E-value=3.1e-08 Score=101.02 Aligned_cols=82 Identities=13% Similarity=0.067 Sum_probs=67.6
Q ss_pred CCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEEEcCCCCCCCCc
Q 005374 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDC 232 (699)
Q Consensus 153 ~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~f~~g~~~~~~ 232 (699)
+.+.++.||++||++|+.+.|.+++++.. .+.+.+..||.++++. ++++++ |.++||++++.+|.
T Consensus 133 ~pv~I~~F~a~~C~~C~~~~~~l~~l~~~-~~~i~~~~vD~~~~~~---~~~~~~------V~~vPtl~i~~~~~----- 197 (215)
T TIGR02187 133 EPVRIEVFVTPTCPYCPYAVLMAHKFALA-NDKILGEMIEANENPD---LAEKYG------VMSVPKIVINKGVE----- 197 (215)
T ss_pred CCcEEEEEECCCCCCcHHHHHHHHHHHHh-cCceEEEEEeCCCCHH---HHHHhC------CccCCEEEEecCCE-----
Confidence 34455569999999999999999999987 3556788999996554 889998 77999999987662
Q ss_pred cccccCCcCHHHHHHHHHH
Q 005374 233 MTRFEGELSVDAVTDWFAT 251 (699)
Q Consensus 233 ~~~Y~G~rs~~~Iv~fi~k 251 (699)
.|.|....+.|++|+.+
T Consensus 198 --~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 198 --EFVGAYPEEQFLEYILS 214 (215)
T ss_pred --EEECCCCHHHHHHHHHh
Confidence 37899999999999865
No 135
>PHA02125 thioredoxin-like protein
Probab=98.68 E-value=1.8e-08 Score=85.31 Aligned_cols=69 Identities=17% Similarity=0.217 Sum_probs=50.7
Q ss_pred EEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEEEcCCCCCCCCccccc
Q 005374 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF 236 (699)
Q Consensus 157 lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~f~~g~~~~~~~~~Y 236 (699)
+|.||||||++|+.+.|.+++++ ..+..||+++++. ++++++ |+++||++ .|.. ...+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~---l~~~~~------v~~~PT~~---~g~~----~~~~ 59 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVE---LTAKHH------IRSLPTLV---NTST----LDRF 59 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHH---HHHHcC------CceeCeEE---CCEE----EEEE
Confidence 68999999999999999997653 3578899886554 899998 77999988 3422 1345
Q ss_pred cC-CcCHHHHHH
Q 005374 237 EG-ELSVDAVTD 247 (699)
Q Consensus 237 ~G-~rs~~~Iv~ 247 (699)
.| +++..+|.+
T Consensus 60 ~G~~~~~~~l~~ 71 (75)
T PHA02125 60 TGVPRNVAELKE 71 (75)
T ss_pred eCCCCcHHHHHH
Confidence 66 345455543
No 136
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.66 E-value=6.7e-09 Score=104.00 Aligned_cols=102 Identities=13% Similarity=0.262 Sum_probs=87.2
Q ss_pred cceEEEecCCCCcccccCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhccc-ceeeeeccchhhhhHHHHhCCCCcccc
Q 005374 135 VHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLATHLAERKPIGQIFF 213 (699)
Q Consensus 135 ~~~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~-~va~Vdc~~~~~~~~L~~k~~i~~~f~ 213 (699)
.+++..++.+|+...+. .-|+++||||||+.|+.+.|.|+..|.--.+.. ++|.||.+.|+- |.- +|.
T Consensus 23 ~s~~~~~~eenw~~~l~--gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npg---LsG------RF~ 91 (248)
T KOG0913|consen 23 SSKLTRIDEENWKELLT--GEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPG---LSG------RFL 91 (248)
T ss_pred cceeEEecccchhhhhc--hHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccc---cce------eeE
Confidence 44789999999988774 469999999999999999999999998777765 999999997665 333 455
Q ss_pred cccccEEEEcCCCCCCCCccccccCCcCHHHHHHHHHHH
Q 005374 214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (699)
Q Consensus 214 V~gyPTl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~ 252 (699)
|...|||.-..+|. ...|.|.|+.++++.|+..+
T Consensus 92 vtaLptIYHvkDGe-----FrrysgaRdk~dfisf~~~r 125 (248)
T KOG0913|consen 92 VTALPTIYHVKDGE-----FRRYSGARDKNDFISFEEHR 125 (248)
T ss_pred EEecceEEEeeccc-----cccccCcccchhHHHHHHhh
Confidence 88999999999994 57899999999999999755
No 137
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.62 E-value=4e-08 Score=83.53 Aligned_cols=73 Identities=18% Similarity=0.097 Sum_probs=55.7
Q ss_pred EEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEEEcCCCCCCCCccccc
Q 005374 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF 236 (699)
Q Consensus 157 lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~f~~g~~~~~~~~~Y 236 (699)
-|.||++||++|+.+.|.++++++++.....+..||- .. .+.+++ |.+.|||++ +|.. .+
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~---~~---~a~~~~------v~~vPti~i--~G~~------~~ 61 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVTD---MN---EILEAG------VTATPGVAV--DGEL------VI 61 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC---HH---HHHHcC------CCcCCEEEE--CCEE------EE
Confidence 3899999999999999999999999976667877771 12 356677 779999999 6642 26
Q ss_pred cCC-cCHHHHHHHH
Q 005374 237 EGE-LSVDAVTDWF 249 (699)
Q Consensus 237 ~G~-rs~~~Iv~fi 249 (699)
.|. .+.+.|.+++
T Consensus 62 ~G~~~~~~~l~~~l 75 (76)
T TIGR00412 62 MGKIPSKEEIKEIL 75 (76)
T ss_pred EeccCCHHHHHHHh
Confidence 775 3557777665
No 138
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.62 E-value=2.6e-08 Score=91.83 Aligned_cols=90 Identities=16% Similarity=0.135 Sum_probs=59.8
Q ss_pred cCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCccccccc--ccEEEEcC-CCC
Q 005374 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG--LPSLVAFP-PGC 227 (699)
Q Consensus 151 ~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~g--yPTl~~f~-~g~ 227 (699)
.+++++||.|||+||++|+.+.|.+.+.+.......++..||.+.+.. .+...++ +.| +||+++|. +|.
T Consensus 17 ~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~--~~~~~~~------~~g~~vPt~~f~~~~Gk 88 (117)
T cd02959 17 DSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEE--PKDEEFS------PDGGYIPRILFLDPSGD 88 (117)
T ss_pred HcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCC--chhhhcc------cCCCccceEEEECCCCC
Confidence 478999999999999999999999999877654334677777764432 1345555 545 99999996 664
Q ss_pred CCCCccccccCCcCHHHHHHHH
Q 005374 228 KSSDCMTRFEGELSVDAVTDWF 249 (699)
Q Consensus 228 ~~~~~~~~Y~G~rs~~~Iv~fi 249 (699)
.. ......-|..+.+...+++
T Consensus 89 ~~-~~~~~~~~~~~~~~f~~~~ 109 (117)
T cd02959 89 VH-PEIINKKGNPNYKYFYSSA 109 (117)
T ss_pred Cc-hhhccCCCCccccccCCCH
Confidence 42 1112334555444443333
No 139
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.58 E-value=9.9e-08 Score=110.66 Aligned_cols=101 Identities=16% Similarity=0.232 Sum_probs=78.1
Q ss_pred CCCCccccc----CCCcEEEEEeccCCCCCCCcchHH---HHHHHHhhcccceeeeeccch-hhhhHHHHhCCCCccccc
Q 005374 143 SEDFPSIFH----DSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDI-RLATHLAERKPIGQIFFR 214 (699)
Q Consensus 143 ~~nF~~~v~----~~~~~lV~FYapwC~hCk~l~p~~---~~~A~~L~g~~~va~Vdc~~~-~~~~~L~~k~~i~~~f~V 214 (699)
.++|++.+. ++++++|.|||+||++|+.+++.. +++.+.+++ ..+.+||++++ .....++++++ |
T Consensus 460 ~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~-~~~v~vDvt~~~~~~~~l~~~~~------v 532 (571)
T PRK00293 460 VAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD-TVLLQADVTANNAEDVALLKHYN------V 532 (571)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC-CEEEEEECCCCChhhHHHHHHcC------C
Confidence 455666662 478999999999999999999875 678888865 57889999854 23456889988 7
Q ss_pred ccccEEEEcC-CCCCCCCccccccCCcCHHHHHHHHHHH
Q 005374 215 RGLPSLVAFP-PGCKSSDCMTRFEGELSVDAVTDWFATA 252 (699)
Q Consensus 215 ~gyPTl~~f~-~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~ 252 (699)
.++||+++|. +|... ....+.|..+.+++.+++.+.
T Consensus 533 ~g~Pt~~~~~~~G~~i--~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 533 LGLPTILFFDAQGQEI--PDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred CCCCEEEEECCCCCCc--ccccccCCCCHHHHHHHHHHh
Confidence 7999999997 45431 124678999999999998764
No 140
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.55 E-value=4.7e-08 Score=88.42 Aligned_cols=88 Identities=22% Similarity=0.263 Sum_probs=60.5
Q ss_pred CCCcEEEEEeccCCCCCCCcchHHHHH---HHHhhcccceeeeeccchh-----------------hhhHHHHhCCCCcc
Q 005374 152 DSKPWLIQVYSDGSYLCGQFSGAWKTI---AALLEGIANTGMVELGDIR-----------------LATHLAERKPIGQI 211 (699)
Q Consensus 152 ~~~~~lV~FYapwC~hCk~l~p~~~~~---A~~L~g~~~va~Vdc~~~~-----------------~~~~L~~k~~i~~~ 211 (699)
++++.+|.|++|||++|+++.++..+. +..++....+..+++.... ....++++++
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 79 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYG---- 79 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT----
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcC----
Confidence 678999999999999999998888754 3444444577777777433 1234777777
Q ss_pred cccccccEEEEcC-CCCCCCCccccccCCcCHHHHHHHH
Q 005374 212 FFRRGLPSLVAFP-PGCKSSDCMTRFEGELSVDAVTDWF 249 (699)
Q Consensus 212 f~V~gyPTl~~f~-~g~~~~~~~~~Y~G~rs~~~Iv~fi 249 (699)
|+++||++++. +|.. ...+.|..+.++|.+++
T Consensus 80 --v~gtPt~~~~d~~G~~----v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 80 --VNGTPTIVFLDKDGKI----VYRIPGYLSPEELLKML 112 (112)
T ss_dssp ----SSSEEEECTTTSCE----EEEEESS--HHHHHHHH
T ss_pred --CCccCEEEEEcCCCCE----EEEecCCCCHHHHHhhC
Confidence 77999999996 5542 24578999999998764
No 141
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=7.6e-08 Score=93.75 Aligned_cols=64 Identities=22% Similarity=0.324 Sum_probs=56.9
Q ss_pred CCccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCCh----HHHHHHHHHHHHHcCChhhhcccC
Q 005374 34 SFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPS----TADFLKIQYAYELLTDPLWKRNYD 97 (699)
Q Consensus 34 ~~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~----~~~f~~I~~Ay~vL~d~~~R~~YD 97 (699)
++.-|+|+||.|.+..+.++||+.||+|+...|||+|+.+ ...|..+.+||..|-|+..|..-+
T Consensus 50 yfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~ 117 (250)
T KOG1150|consen 50 YFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL 117 (250)
T ss_pred ccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 4678999999999999999999999999999999999964 445999999999999998776544
No 142
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.53 E-value=9.9e-08 Score=93.75 Aligned_cols=62 Identities=10% Similarity=0.168 Sum_probs=53.6
Q ss_pred cCcccccCcCCC--CCHHHHHHHHHHHHHhcCCCCCC--Ch------HHHHHHHHHHHHHcCChhhhcccCc
Q 005374 37 PSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEI--PS------TADFLKIQYAYELLTDPLWKRNYDV 98 (699)
Q Consensus 37 ~d~Y~vLgv~~~--as~~eIk~ayr~l~~~~HPDk~~--~~------~~~f~~I~~Ay~vL~d~~~R~~YD~ 98 (699)
.|||++||+++. .+..+++++|++|.+++|||+.. +. .+.-..||+||.+|+||.+|+.|=.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL 73 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII 73 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence 489999999987 88999999999999999999754 22 2346899999999999999999863
No 143
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.45 E-value=4.1e-07 Score=88.76 Aligned_cols=92 Identities=10% Similarity=0.154 Sum_probs=71.9
Q ss_pred CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcc-cceeeeeccchhh-------------------hhHHHHhCCCCcc
Q 005374 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRL-------------------ATHLAERKPIGQI 211 (699)
Q Consensus 152 ~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~-~~va~Vdc~~~~~-------------------~~~L~~k~~i~~~ 211 (699)
.+++++|.||++||++|+...|.+.++++++.+. +.+..|++++... ...+++.++
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---- 135 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYG---- 135 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcC----
Confidence 4688999999999999999999999999999765 4788888874321 123566666
Q ss_pred cccccccEEEEcCCCCCCCCccccccCCcCHHHHHHHHHHH
Q 005374 212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (699)
Q Consensus 212 f~V~gyPTl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~ 252 (699)
|.++|+++++.+++.. ...+.|..+.+.+.+++.+.
T Consensus 136 --v~~~P~~~lid~~g~i---~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 136 --VGPLPTTFLIDKDGKV---VKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred --CCCcCeEEEECCCCcE---EEEEeCCCCHHHHHHHHHHh
Confidence 7799998888654432 34678999999999998754
No 144
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.39 E-value=4.3e-07 Score=74.61 Aligned_cols=57 Identities=21% Similarity=0.173 Sum_probs=47.4
Q ss_pred EEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEEE
Q 005374 156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA 222 (699)
Q Consensus 156 ~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~ 222 (699)
-++.||++||++|+.+.+.+++++... +.+.+..+|.++++. ++++++ |.++|||++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~-~~i~~~~id~~~~~~---l~~~~~------i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN-PNISAEMIDAAEFPD---LADEYG------VMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC-CceEEEEEEcccCHh---HHHHcC------CcccCEEEE
Confidence 367899999999999999999997753 446899999986554 888988 669999866
No 145
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.38 E-value=6.4e-07 Score=94.55 Aligned_cols=90 Identities=16% Similarity=0.094 Sum_probs=68.3
Q ss_pred CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchh--------hhhHHHHhCCCCcccccccccEEEEc
Q 005374 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR--------LATHLAERKPIGQIFFRRGLPSLVAF 223 (699)
Q Consensus 152 ~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~--------~~~~L~~k~~i~~~f~V~gyPTl~~f 223 (699)
.+++.||.||++||++|+.+.|.++++++++. +.|..|+.+... ....++++++ |+++||++++
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~g------V~~vPtl~Lv 236 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLK------IRTVPAVFLA 236 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcC------CCcCCeEEEE
Confidence 57899999999999999999999999999874 455555655321 1123778887 7799999999
Q ss_pred CC-CCCCCCccccccCCcCHHHHHHHHHHH
Q 005374 224 PP-GCKSSDCMTRFEGELSVDAVTDWFATA 252 (699)
Q Consensus 224 ~~-g~~~~~~~~~Y~G~rs~~~Iv~fi~k~ 252 (699)
.+ |+.. .....|..+.+.|.+.+...
T Consensus 237 ~~~~~~v---~~v~~G~~s~~eL~~~i~~~ 263 (271)
T TIGR02740 237 DPDPNQF---TPIGFGVMSADELVDRILLA 263 (271)
T ss_pred ECCCCEE---EEEEeCCCCHHHHHHHHHHH
Confidence 86 4432 22346889999999988765
No 146
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.34 E-value=5.1e-07 Score=87.53 Aligned_cols=50 Identities=16% Similarity=0.360 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCC--------hHHHHHHHHHHHHHcCChhhhcccCc
Q 005374 49 SSVEQVKEAYEKFSSKWNSGEEIP--------STADFLKIQYAYELLTDPLWKRNYDV 98 (699)
Q Consensus 49 as~~eIk~ayr~l~~~~HPDk~~~--------~~~~f~~I~~Ay~vL~d~~~R~~YD~ 98 (699)
.+..+|+++||+|+++||||+.+. +.+.+..||+||++|+||.+|+.|+.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL 60 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYML 60 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 478899999999999999997442 34569999999999999999999995
No 147
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.28 E-value=1.6e-06 Score=79.70 Aligned_cols=93 Identities=17% Similarity=0.117 Sum_probs=63.1
Q ss_pred ecCCCCcccccCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeec--------------------cchhhhh
Q 005374 141 VTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVEL--------------------GDIRLAT 200 (699)
Q Consensus 141 Lt~~nF~~~v~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc--------------------~~~~~~~ 200 (699)
++.+++......+++++|.||++||++|+.+.|.+.++++.+. .+.|...++ +.+ .
T Consensus 8 ~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~---~ 83 (123)
T cd03011 8 LDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVINDPD---G 83 (123)
T ss_pred CCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEECCC---c
Confidence 3334443333356899999999999999999999999988742 112221111 211 2
Q ss_pred HHHHhCCCCcccccccccEEEEcCCCCCCCCccccccCCcCHHHHHH
Q 005374 201 HLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTD 247 (699)
Q Consensus 201 ~L~~k~~i~~~f~V~gyPTl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~ 247 (699)
.+++.++ |.++|+++++.+++. ...+.|..+.++|.+
T Consensus 84 ~~~~~~~------i~~~P~~~vid~~gi----~~~~~g~~~~~~~~~ 120 (123)
T cd03011 84 VISARWG------VSVTPAIVIVDPGGI----VFVTTGVTSEWGLRL 120 (123)
T ss_pred HHHHhCC------CCcccEEEEEcCCCe----EEEEeccCCHHHHHh
Confidence 3777777 679999999987652 345678888888764
No 148
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=7e-07 Score=88.54 Aligned_cols=85 Identities=20% Similarity=0.267 Sum_probs=68.4
Q ss_pred cCCCCcccc--cCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhccc-ceeeeeccchhhhhHHHHhCCCCccccccccc
Q 005374 142 TSEDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLATHLAERKPIGQIFFRRGLP 218 (699)
Q Consensus 142 t~~nF~~~v--~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~-~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyP 218 (699)
+.+.++..+ +....|+|+||+-|.+.|.+++|.|.++..++.... ++|+||.+ ...+.+.+|+|+-.=.-+..|
T Consensus 131 ~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiG---rfpd~a~kfris~s~~srQLP 207 (265)
T KOG0914|consen 131 NMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIG---RFPDVAAKFRISLSPGSRQLP 207 (265)
T ss_pred chhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeec---cCcChHHheeeccCcccccCC
Confidence 345555555 578899999999999999999999999999997655 99999999 444488898866333345899
Q ss_pred EEEEcCCCCCC
Q 005374 219 SLVAFPPGCKS 229 (699)
Q Consensus 219 Tl~~f~~g~~~ 229 (699)
|+.+|..|...
T Consensus 208 T~ilFq~gkE~ 218 (265)
T KOG0914|consen 208 TYILFQKGKEV 218 (265)
T ss_pred eEEEEccchhh
Confidence 99999998654
No 149
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.25 E-value=7.4e-07 Score=83.05 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=54.3
Q ss_pred CcccccCCCcEEEEEeccCCCCCCCcch-HHH--HHHHHhhcccceeeeeccchhhhhHHHHhCC--CCcccccccccEE
Q 005374 146 FPSIFHDSKPWLIQVYSDGSYLCGQFSG-AWK--TIAALLEGIANTGMVELGDIRLATHLAERKP--IGQIFFRRGLPSL 220 (699)
Q Consensus 146 F~~~v~~~~~~lV~FYapwC~hCk~l~p-~~~--~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~--i~~~f~V~gyPTl 220 (699)
|..+..+++++||.|||+||+.|+.+.+ .|. ++++.|.....+.+||.++++. +++.+. ..+.|++.|+||+
T Consensus 8 l~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~---~~~~~~~~~~~~~~~~G~Pt~ 84 (124)
T cd02955 8 FEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPD---VDKIYMNAAQAMTGQGGWPLN 84 (124)
T ss_pred HHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcH---HHHHHHHHHHHhcCCCCCCEE
Confidence 4444568999999999999999999987 343 5677776656777889886544 333210 0001237799999
Q ss_pred EEcCCCC
Q 005374 221 VAFPPGC 227 (699)
Q Consensus 221 ~~f~~g~ 227 (699)
+++.+.+
T Consensus 85 vfl~~~G 91 (124)
T cd02955 85 VFLTPDL 91 (124)
T ss_pred EEECCCC
Confidence 9996643
No 150
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.22 E-value=2.8e-06 Score=82.10 Aligned_cols=95 Identities=13% Similarity=0.100 Sum_probs=63.7
Q ss_pred ccCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhh---------hhHH-HHhCCCCcccccccccE
Q 005374 150 FHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL---------ATHL-AERKPIGQIFFRRGLPS 219 (699)
Q Consensus 150 v~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~---------~~~L-~~k~~i~~~f~V~gyPT 219 (699)
+..++..+|.|||+||++|++..|.++++++++. ..|..|+.++... ...+ ...++. +.|.++||
T Consensus 47 ~~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~---~~v~~iPT 121 (153)
T TIGR02738 47 ANQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPN---PRPVVTPA 121 (153)
T ss_pred hhcCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhcc---CCCCCCCe
Confidence 3345566999999999999999999999999873 3555666653210 0112 223311 02779999
Q ss_pred EEEcCC-CCCCCCccccccCCcCHHHHHHHHHHH
Q 005374 220 LVAFPP-GCKSSDCMTRFEGELSVDAVTDWFATA 252 (699)
Q Consensus 220 l~~f~~-g~~~~~~~~~Y~G~rs~~~Iv~fi~k~ 252 (699)
.+++.. |... ...+.|..+.+.+.+.+.+.
T Consensus 122 t~LID~~G~~i---~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 122 TFLVNVNTRKA---YPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred EEEEeCCCCEE---EEEeecccCHHHHHHHHHHh
Confidence 999965 3321 23468999999888877653
No 151
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.19 E-value=2.7e-06 Score=79.32 Aligned_cols=69 Identities=12% Similarity=0.114 Sum_probs=52.1
Q ss_pred CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcc---cceeeeeccchhh---------------------hhHHHHhCC
Q 005374 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRL---------------------ATHLAERKP 207 (699)
Q Consensus 152 ~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~---~~va~Vdc~~~~~---------------------~~~L~~k~~ 207 (699)
.++++||.||++||+.|+...|.+.++++++... +.|..|+.+.+.. ...+++.++
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 4679999999999999999999999999988643 3455566553311 123666666
Q ss_pred CCcccccccccEEEEcCCC
Q 005374 208 IGQIFFRRGLPSLVAFPPG 226 (699)
Q Consensus 208 i~~~f~V~gyPTl~~f~~g 226 (699)
|.++|+++++..+
T Consensus 97 ------v~~~P~~~lid~~ 109 (131)
T cd03009 97 ------IEGIPTLIILDAD 109 (131)
T ss_pred ------CCCCCEEEEECCC
Confidence 7799999999743
No 152
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.19 E-value=2.9e-06 Score=96.51 Aligned_cols=88 Identities=20% Similarity=0.129 Sum_probs=66.1
Q ss_pred cCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcc-cceeeeec----------------------------cchhhhhH
Q 005374 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVEL----------------------------GDIRLATH 201 (699)
Q Consensus 151 ~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~-~~va~Vdc----------------------------~~~~~~~~ 201 (699)
..++++||.|||+||++|+...|.+++++++++.. +.|..|+. +. ...
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~---~~~ 130 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDN---GGT 130 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccc---cHH
Confidence 46889999999999999999999999999988632 23433332 21 223
Q ss_pred HHHhCCCCcccccccccEEEEc-CCCCCCCCccccccCCcCHHHHHHHHHH
Q 005374 202 LAERKPIGQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFAT 251 (699)
Q Consensus 202 L~~k~~i~~~f~V~gyPTl~~f-~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k 251 (699)
+++.++ |+++||++++ ++|.. ...+.|..+.+.|..++..
T Consensus 131 lak~fg------V~giPTt~IIDkdGkI----V~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 131 LAQSLN------ISVYPSWAIIGKDGDV----QRIVKGSISEAQALALIRN 171 (521)
T ss_pred HHHHcC------CCCcCeEEEEcCCCeE----EEEEeCCCCHHHHHHHHHH
Confidence 666666 7799999655 66653 3567899999999999974
No 153
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=1.5e-06 Score=88.26 Aligned_cols=65 Identities=25% Similarity=0.229 Sum_probs=58.0
Q ss_pred ccCcccccCcCC---CCCHHHHHHHHHHHHHhcCCCCC-----CChHHHHHHHHHHHHHcCChhhhcccCcCC
Q 005374 36 PPSHYDALGIKP---YSSVEQVKEAYEKFSSKWNSGEE-----IPSTADFLKIQYAYELLTDPLWKRNYDVYG 100 (699)
Q Consensus 36 ~~d~Y~vLgv~~---~as~~eIk~ayr~l~~~~HPDk~-----~~~~~~f~~I~~Ay~vL~d~~~R~~YD~~g 100 (699)
..|+|.+||++. .++..+|.++.++.+.+||||+. .+..+-|..|+.||++|+|+.+|..||.--
T Consensus 42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d 114 (379)
T COG5269 42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND 114 (379)
T ss_pred hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccc
Confidence 469999999985 68899999999999999999975 367788999999999999999999999643
No 154
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.16 E-value=4.7e-06 Score=78.16 Aligned_cols=101 Identities=9% Similarity=0.077 Sum_probs=82.1
Q ss_pred EecCCCCcccccCCCcEEEEEecc--CCCCCCCcchHHHHHHHHhhcc-cceeeeeccchhhhhHHHHhCCCCccccccc
Q 005374 140 VVTSEDFPSIFHDSKPWLIQVYSD--GSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (699)
Q Consensus 140 ~Lt~~nF~~~v~~~~~~lV~FYap--wC~hCk~l~p~~~~~A~~L~g~-~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~g 216 (699)
.++..+.+..+......++.|-.+ -++.+...+=+.+++|+++.+. +++++||+++++. |+.+|+ |++
T Consensus 21 ~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~---LA~~fg------V~s 91 (132)
T PRK11509 21 PVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEA---IGDRFG------VFR 91 (132)
T ss_pred ccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHH---HHHHcC------Ccc
Confidence 455667777776666666666554 3678889999999999999744 7999999996655 999999 779
Q ss_pred ccEEEEcCCCCCCCCccccccCCcCHHHHHHHHHHHh
Q 005374 217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI 253 (699)
Q Consensus 217 yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~v 253 (699)
+|||++|++|.. .....|.++.+.+.+|+.+.+
T Consensus 92 iPTLl~FkdGk~----v~~i~G~~~k~~l~~~I~~~L 124 (132)
T PRK11509 92 FPATLVFTGGNY----RGVLNGIHPWAELINLMRGLV 124 (132)
T ss_pred CCEEEEEECCEE----EEEEeCcCCHHHHHHHHHHHh
Confidence 999999999974 356789999999999998773
No 155
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.15 E-value=2.9e-06 Score=75.29 Aligned_cols=69 Identities=17% Similarity=0.142 Sum_probs=53.8
Q ss_pred CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhc-ccceeeeeccch--hhh------------------hHHHHhCCCCc
Q 005374 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG-IANTGMVELGDI--RLA------------------THLAERKPIGQ 210 (699)
Q Consensus 152 ~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g-~~~va~Vdc~~~--~~~------------------~~L~~k~~i~~ 210 (699)
.+++++|.||++||++|+...+.+.++.+.+.. .+.+..|+++.+ ... ..+++.++
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 94 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYG--- 94 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcC---
Confidence 368999999999999999999999999999863 358999999853 111 22555555
Q ss_pred ccccccccEEEEcCCC
Q 005374 211 IFFRRGLPSLVAFPPG 226 (699)
Q Consensus 211 ~f~V~gyPTl~~f~~g 226 (699)
+.++|+++++.+.
T Consensus 95 ---~~~~P~~~l~d~~ 107 (116)
T cd02966 95 ---VRGLPTTFLIDRD 107 (116)
T ss_pred ---cCccceEEEECCC
Confidence 6699999888543
No 156
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.15 E-value=4.7e-06 Score=73.15 Aligned_cols=77 Identities=13% Similarity=0.093 Sum_probs=59.9
Q ss_pred CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEEEcCCCCCCCC
Q 005374 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSD 231 (699)
Q Consensus 152 ~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~f~~g~~~~~ 231 (699)
.+.+-+..|++|||++|....+.+++++.... .+.+..+|.++.+ .++++|+ |.++||+++ +|.
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~~---e~a~~~~------V~~vPt~vi--dG~---- 74 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALFQ---DEVEERG------IMSVPAIFL--NGE---- 74 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhCH---HHHHHcC------CccCCEEEE--CCE----
Confidence 35567888999999999999999999997653 4689999988544 4889998 779999975 664
Q ss_pred ccccccCCcCHHHHH
Q 005374 232 CMTRFEGELSVDAVT 246 (699)
Q Consensus 232 ~~~~Y~G~rs~~~Iv 246 (699)
..+.|..+.+.++
T Consensus 75 --~~~~G~~~~~e~~ 87 (89)
T cd03026 75 --LFGFGRMTLEEIL 87 (89)
T ss_pred --EEEeCCCCHHHHh
Confidence 3446766666654
No 157
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.15 E-value=1.9e-05 Score=72.62 Aligned_cols=98 Identities=16% Similarity=0.162 Sum_probs=71.7
Q ss_pred cccchhhhhhhhhcCCCcEEEEEEc--CCCCCchHHHHHHHHhcc---CCceEEEEEccc---cccHhHHhhcCCC--CC
Q 005374 262 YTKESMGKNFLAKTGPHKVKVIFFS--KTGERASPFVRQISRNYW---AYASFAFVLWRE---EESSIWWNTFEVE--SA 331 (699)
Q Consensus 262 it~~~~~~~Fl~~~~~~~v~vl~f~--~~~~~~~~~~~~~A~~~~---~~~~Fg~V~~~~---~~s~~l~~kf~V~--~~ 331 (699)
+++.+ ++.++..+. .+.|-|+. .-|.. .+.++.+|.+|. +.+.+|.|...+ .+..+|+++|+|+ ++
T Consensus 6 L~~~n-F~~~v~~~~--~vlV~F~A~~Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gy 81 (116)
T cd03007 6 LDTVT-FYKVIPKFK--YSLVKFDTAYPYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESY 81 (116)
T ss_pred CChhh-HHHHHhcCC--cEEEEEeCCCCCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCC
Confidence 45444 677776532 35555776 54544 477788887663 357799997632 2347899999999 89
Q ss_pred CEEEEEcCCC-CCceeecCC-CChhHHHHHHHHh
Q 005374 332 PAIVFLKDPG-VKPVVYYGS-FNNSRLSEVMEQN 363 (699)
Q Consensus 332 PtIvlfk~~~-~~pv~y~g~-~~~~~L~~fi~~~ 363 (699)
|||.+|++++ ..|+.|.|. ++.+.|.+||+++
T Consensus 82 PTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 82 PVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 9999999873 467889996 9999999999876
No 158
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.13 E-value=4.2e-06 Score=75.79 Aligned_cols=64 Identities=13% Similarity=0.194 Sum_probs=46.3
Q ss_pred CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEE
Q 005374 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLV 221 (699)
Q Consensus 152 ~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~ 221 (699)
.+++++|.||++||++|++..|.++++++.+++.+.+..|.-+.......++++++ +.++|++.
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~------~~~~p~~~ 83 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHG------LEAFPYVL 83 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhC------CCCCcEEe
Confidence 36899999999999999999999999988876545444442122223444778877 44788764
No 159
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.13 E-value=2.2e-06 Score=79.44 Aligned_cols=82 Identities=15% Similarity=0.149 Sum_probs=55.4
Q ss_pred CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccch-h-------------------hhhHHHHhCCCCcc
Q 005374 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI-R-------------------LATHLAERKPIGQI 211 (699)
Q Consensus 152 ~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~-~-------------------~~~~L~~k~~i~~~ 211 (699)
.+++++|.||++||++|+...|.++++++... +.|..|+.++. . ....+++.++
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~---- 97 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLG---- 97 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcC----
Confidence 47899999999999999999999999987752 44555553211 0 1112455555
Q ss_pred cccccccEEEEc-CCCCCCCCccccccCCcCHHHH
Q 005374 212 FFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAV 245 (699)
Q Consensus 212 f~V~gyPTl~~f-~~g~~~~~~~~~Y~G~rs~~~I 245 (699)
|.++|+.+++ ++|.. ...|.|..+.+.|
T Consensus 98 --v~~~P~~~~ld~~G~v----~~~~~G~~~~~~~ 126 (127)
T cd03010 98 --VYGVPETFLIDGDGII----RYKHVGPLTPEVW 126 (127)
T ss_pred --CCCCCeEEEECCCceE----EEEEeccCChHhc
Confidence 7799955444 56653 3567788876654
No 160
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.12 E-value=4.2e-06 Score=78.44 Aligned_cols=69 Identities=16% Similarity=0.145 Sum_probs=52.0
Q ss_pred CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcc---cceeeeeccchh-hh---------------------hHHHHhC
Q 005374 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIR-LA---------------------THLAERK 206 (699)
Q Consensus 152 ~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~---~~va~Vdc~~~~-~~---------------------~~L~~k~ 206 (699)
.+++++|.||++||++|+...|.++++++.+++. +.|..|+++... .. ..+++.+
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 4789999999999999999999999999988753 356667766432 11 1234445
Q ss_pred CCCcccccccccEEEEcCCC
Q 005374 207 PIGQIFFRRGLPSLVAFPPG 226 (699)
Q Consensus 207 ~i~~~f~V~gyPTl~~f~~g 226 (699)
+ |.++||++++..+
T Consensus 96 ~------v~~iPt~~lid~~ 109 (132)
T cd02964 96 K------VEGIPTLVVLKPD 109 (132)
T ss_pred C------CCCCCEEEEECCC
Confidence 4 7899999999643
No 161
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.03 E-value=4.3e-05 Score=70.85 Aligned_cols=94 Identities=15% Similarity=0.218 Sum_probs=69.0
Q ss_pred cccchhhhhhhhhcCCCcEEEEEEcCC------CC--CchHHHHHHHHhc--cCCceEEEEEccccccHhHHhhcCCCCC
Q 005374 262 YTKESMGKNFLAKTGPHKVKVIFFSKT------GE--RASPFVRQISRNY--WAYASFAFVLWREEESSIWWNTFEVESA 331 (699)
Q Consensus 262 it~~~~~~~Fl~~~~~~~v~vl~f~~~------~~--~~~~~~~~~A~~~--~~~~~Fg~V~~~~~~s~~l~~kf~V~~~ 331 (699)
+++.+ +++.+.+. ..+.|++|-.. |. ...|.+..+|.++ .+.+.|+.|.... ..+|+++|+|.+.
T Consensus 14 lt~~n-F~~~v~~~--~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~--~~~La~~~~I~~i 88 (120)
T cd03065 14 LNEKN-YKQVLKKY--DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK--DAKVAKKLGLDEE 88 (120)
T ss_pred CChhh-HHHHHHhC--CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC--CHHHHHHcCCccc
Confidence 45544 56666542 34667777321 33 4456667777777 7789999997543 4789999999999
Q ss_pred CEEEEEcCCCCCceeecCCCChhHHHHHHHH
Q 005374 332 PAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (699)
Q Consensus 332 PtIvlfk~~~~~pv~y~g~~~~~~L~~fi~~ 362 (699)
|||++|+++. .+.|.|..+.+.|.+||.+
T Consensus 89 PTl~lfk~G~--~v~~~G~~~~~~l~~~l~~ 117 (120)
T cd03065 89 DSIYVFKDDE--VIEYDGEFAADTLVEFLLD 117 (120)
T ss_pred cEEEEEECCE--EEEeeCCCCHHHHHHHHHH
Confidence 9999999764 4458999999999999874
No 162
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.01 E-value=1.7e-05 Score=69.86 Aligned_cols=96 Identities=25% Similarity=0.399 Sum_probs=70.8
Q ss_pred cccchhhhhhhhhcCCCcEEEEEE-cCC---CCCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEE
Q 005374 262 YTKESMGKNFLAKTGPHKVKVIFF-SKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL 337 (699)
Q Consensus 262 it~~~~~~~Fl~~~~~~~v~vl~f-~~~---~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlf 337 (699)
+++++ +++.+.. .+++.+++| .+. |....+.+..++..+.+.+.|+.|.... ...++++|+|.+.|++++|
T Consensus 4 lt~~~-f~~~i~~--~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~ 78 (103)
T PF00085_consen 4 LTDEN-FEKFINE--SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDE--NKELCKKYGVKSVPTIIFF 78 (103)
T ss_dssp ESTTT-HHHHHTT--TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTT--SHHHHHHTTCSSSSEEEEE
T ss_pred CCHHH-HHHHHHc--cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhc--cchhhhccCCCCCCEEEEE
Confidence 44444 6666654 244556655 332 2335677777888888889999987543 4789999999999999999
Q ss_pred cCCCCCceeecCCCChhHHHHHHHHh
Q 005374 338 KDPGVKPVVYYGSFNNSRLSEVMEQN 363 (699)
Q Consensus 338 k~~~~~pv~y~g~~~~~~L~~fi~~~ 363 (699)
+++... ..+.|.++.+.|.+||++|
T Consensus 79 ~~g~~~-~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 79 KNGKEV-KRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp ETTEEE-EEEESSSSHHHHHHHHHHH
T ss_pred ECCcEE-EEEECCCCHHHHHHHHHcC
Confidence 976543 3689999999999999876
No 163
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=97.96 E-value=8.6e-06 Score=80.13 Aligned_cols=94 Identities=21% Similarity=0.201 Sum_probs=62.9
Q ss_pred CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccc-hhhhhHHHHhCC-------------CCcccccccc
Q 005374 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGD-IRLATHLAERKP-------------IGQIFFRRGL 217 (699)
Q Consensus 152 ~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~-~~~~~~L~~k~~-------------i~~~f~V~gy 217 (699)
.+++++|.||++||++|++..|.++++++. + ..+..|+.++ .......+++++ +.+.|.|.++
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~-~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~ 138 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD--G-LPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGA 138 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc--C-CEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeC
Confidence 578999999999999999999999988753 2 3555555432 111112222211 1223558899
Q ss_pred cEE-EEcCCCCCCCCccccccCCcCHHHHHHHHHHH
Q 005374 218 PSL-VAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (699)
Q Consensus 218 PTl-~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~ 252 (699)
|+. ++.++|.. ...+.|..+.+.+.+++.+.
T Consensus 139 P~~~~id~~G~i----~~~~~G~~~~~~l~~~l~~~ 170 (173)
T TIGR00385 139 PETFLVDGNGVI----LYRHAGPLNNEVWTEGFLPA 170 (173)
T ss_pred CeEEEEcCCceE----EEEEeccCCHHHHHHHHHHH
Confidence 964 44567753 24567999999999998776
No 164
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=97.96 E-value=1.7e-05 Score=79.03 Aligned_cols=94 Identities=18% Similarity=0.134 Sum_probs=64.0
Q ss_pred CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchh-hhhHHHHhCCC-------------Ccccccccc
Q 005374 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-LATHLAERKPI-------------GQIFFRRGL 217 (699)
Q Consensus 152 ~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~-~~~~L~~k~~i-------------~~~f~V~gy 217 (699)
.+++++|.||++||++|++..|.++++++. + +.|..|+.+++. ......+++++ .+.|.|.++
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~-~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~ 143 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--G-IRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA 143 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--C-CEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcC
Confidence 578999999999999999999999988652 3 356667654322 12222222221 123568899
Q ss_pred cEEEEc-CCCCCCCCccccccCCcCHHHHHHHHHHH
Q 005374 218 PSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (699)
Q Consensus 218 PTl~~f-~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~ 252 (699)
|+.+++ ++|.. ...+.|..+.+.+.+++...
T Consensus 144 P~t~vid~~G~i----~~~~~G~~~~~~l~~~i~~~ 175 (185)
T PRK15412 144 PETFLIDGNGII----RYRHAGDLNPRVWESEIKPL 175 (185)
T ss_pred CeEEEECCCceE----EEEEecCCCHHHHHHHHHHH
Confidence 965555 56653 35678999999888888766
No 165
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=97.94 E-value=4.1e-05 Score=68.31 Aligned_cols=94 Identities=14% Similarity=0.163 Sum_probs=67.0
Q ss_pred cccchhhhhhhhhcCCCcEEEE-EEcC---CCCCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEE
Q 005374 262 YTKESMGKNFLAKTGPHKVKVI-FFSK---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL 337 (699)
Q Consensus 262 it~~~~~~~Fl~~~~~~~v~vl-~f~~---~~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlf 337 (699)
++..+ +++.+... .++.+| |+.+ .|....+.+..++.++.+.+.|+.|.... ..+++++|+|.++||+++|
T Consensus 6 l~~~~-f~~~i~~~--~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~i~~~Pt~~~~ 80 (104)
T cd03004 6 LTPED-FPELVLNR--KEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK--YESLCQQANIRAYPTIRLY 80 (104)
T ss_pred cCHHH-HHHHHhcC--CCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc--hHHHHHHcCCCcccEEEEE
Confidence 44333 45554432 234455 4443 23446788888998888888999886443 4789999999999999999
Q ss_pred cCCCCCceeecCCCC-hhHHHHHH
Q 005374 338 KDPGVKPVVYYGSFN-NSRLSEVM 360 (699)
Q Consensus 338 k~~~~~pv~y~g~~~-~~~L~~fi 360 (699)
++++.....|.|..+ .+.|.+||
T Consensus 81 ~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 81 PGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred cCCCCCceEccCCCCCHHHHHhhC
Confidence 987566777899886 88888875
No 166
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.91 E-value=7.2e-05 Score=65.82 Aligned_cols=94 Identities=21% Similarity=0.289 Sum_probs=67.6
Q ss_pred cccchhhhhhhhhcCCCcEEEEEEcCCCCCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCC
Q 005374 262 YTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG 341 (699)
Q Consensus 262 it~~~~~~~Fl~~~~~~~v~vl~f~~~~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~ 341 (699)
+++.+.++.|+... ..+.|.+|.+.++.....+..+|..+++.+.||.+. +.++.+++++. .|++++|++++
T Consensus 4 i~s~~~l~~~~~~~--~~~vvg~f~~~~~~~~~~f~~~A~~~r~~~~F~~~~-----~~~~~~~~~~~-~~~i~l~~~~~ 75 (97)
T cd02981 4 LTSKEELEKFLDKD--DVVVVGFFKDEESEEYKTFEKVAESLRDDYGFGHTS-----DKEVAKKLKVK-PGSVVLFKPFE 75 (97)
T ss_pred cCCHHHHHHHhccC--CeEEEEEECCCCcHHHHHHHHHHHhcccCCeEEEEC-----hHHHHHHcCCC-CCceEEeCCcc
Confidence 34444456666532 334444565443344566777999998889999884 35688888875 59999999887
Q ss_pred CCceeecCCCChhHHHHHHHHh
Q 005374 342 VKPVVYYGSFNNSRLSEVMEQN 363 (699)
Q Consensus 342 ~~pv~y~g~~~~~~L~~fi~~~ 363 (699)
..++.|.|.++.+.|.+||..|
T Consensus 76 ~~~~~y~g~~~~~~l~~fi~~~ 97 (97)
T cd02981 76 EEPVEYDGEFTEESLVEFIKDN 97 (97)
T ss_pred cCCccCCCCCCHHHHHHHHHhC
Confidence 7788899998889999999764
No 167
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=1.7e-05 Score=79.13 Aligned_cols=54 Identities=19% Similarity=0.429 Sum_probs=48.2
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHH-HcCCh
Q 005374 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYE-LLTDP 90 (699)
Q Consensus 37 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~I~~Ay~-vL~d~ 90 (699)
..+|.+|||..+|+..++|.+|..|++++|||... ...++|.+|.+||. +|+.-
T Consensus 47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~ 103 (342)
T KOG0568|consen 47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEK 103 (342)
T ss_pred HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999654 56788999999999 77643
No 168
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=97.84 E-value=3e-05 Score=70.85 Aligned_cols=98 Identities=8% Similarity=0.181 Sum_probs=70.8
Q ss_pred CCcccc----cCCCcEEEEEeccCCCCCCCcch-HH--HHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccc
Q 005374 145 DFPSIF----HDSKPWLIQVYSDGSYLCGQFSG-AW--KTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL 217 (699)
Q Consensus 145 nF~~~v----~~~~~~lV~FYapwC~hCk~l~p-~~--~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gy 217 (699)
+|++++ ..+++++|.||++||..|+.+.. .| +++.+.++....+.++|.++ +....++..++ +.++
T Consensus 5 s~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~-~e~~~~~~~~~------~~~~ 77 (114)
T cd02958 5 SFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDS-SEGQRFLQSYK------VDKY 77 (114)
T ss_pred CHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCC-ccHHHHHHHhC------ccCC
Confidence 455555 36899999999999999999865 45 34566666544555666653 23345888888 6699
Q ss_pred cEEEEcCC-CCCCCCccccccCCcCHHHHHHHHHHH
Q 005374 218 PSLVAFPP-GCKSSDCMTRFEGELSVDAVTDWFATA 252 (699)
Q Consensus 218 PTl~~f~~-g~~~~~~~~~Y~G~rs~~~Iv~fi~k~ 252 (699)
|++.++.+ ... ....+.|..+.+.+..-+.+.
T Consensus 78 P~~~~i~~~~g~---~l~~~~G~~~~~~f~~~L~~~ 110 (114)
T cd02958 78 PHIAIIDPRTGE---VLKVWSGNITPEDLLSQLIEF 110 (114)
T ss_pred CeEEEEeCccCc---EeEEEcCCCCHHHHHHHHHHH
Confidence 99999965 322 245678999999999888765
No 169
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=1.5e-05 Score=93.14 Aligned_cols=53 Identities=19% Similarity=0.342 Sum_probs=47.0
Q ss_pred ccCcccccCcCC----CCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcC
Q 005374 36 PPSHYDALGIKP----YSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLT 88 (699)
Q Consensus 36 ~~d~Y~vLgv~~----~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~I~~Ay~vL~ 88 (699)
..+-|+||.|+- .-..+.||++|++|+.+|||||||...++|..+++|||.|+
T Consensus 1280 ~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1280 VDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLS 1336 (2235)
T ss_pred hHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHH
Confidence 347799999873 23458899999999999999999999999999999999998
No 170
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=97.81 E-value=2.3e-05 Score=75.10 Aligned_cols=75 Identities=17% Similarity=0.209 Sum_probs=50.5
Q ss_pred CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcc--------cceeeeeccchhh-hhHHHHhCC---------------
Q 005374 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI--------ANTGMVELGDIRL-ATHLAERKP--------------- 207 (699)
Q Consensus 152 ~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~--------~~va~Vdc~~~~~-~~~L~~k~~--------------- 207 (699)
.+++++|.|+|+||+.|++..|..+++.+++.+. +.|-.|+.+++.. .....++.+
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 4789999999999999999999999998877542 3566666663321 112222222
Q ss_pred CCcccccccccEEEEcCCC
Q 005374 208 IGQIFFRRGLPSLVAFPPG 226 (699)
Q Consensus 208 i~~~f~V~gyPTl~~f~~g 226 (699)
+.+.|.|.++||++++...
T Consensus 104 l~~~y~v~~iPt~vlId~~ 122 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPD 122 (146)
T ss_pred HHHHcCCCCCCEEEEECCC
Confidence 1123347788988888643
No 171
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=97.80 E-value=8.3e-05 Score=68.24 Aligned_cols=97 Identities=10% Similarity=0.079 Sum_probs=66.9
Q ss_pred eecccchhhhhhhhhcCCCcEEEEE-EcC---CCCCchHHHHHHHHhccCCceEEEEEccccccHhHH-hhcCCCCCCEE
Q 005374 260 FYYTKESMGKNFLAKTGPHKVKVIF-FSK---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWW-NTFEVESAPAI 334 (699)
Q Consensus 260 ~~it~~~~~~~Fl~~~~~~~v~vl~-f~~---~~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~-~kf~V~~~PtI 334 (699)
+.+++.+ ++....-...+++.++. +.. .+....|.+..+|..+.+.+.|+.|.... ..+++ ++|+|.++|||
T Consensus 12 ~~l~~~~-f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~--~~~l~~~~~~I~~~PTl 88 (113)
T cd03006 12 LDFYKGQ-LDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWW--PQGKCRKQKHFFYFPVI 88 (113)
T ss_pred EEechhh-hHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCC--ChHHHHHhcCCcccCEE
Confidence 3355444 44442211234455554 433 34456788888999998888999986432 35688 58999999999
Q ss_pred EEEcCCCCCceeecCCCChhHHHHHH
Q 005374 335 VFLKDPGVKPVVYYGSFNNSRLSEVM 360 (699)
Q Consensus 335 vlfk~~~~~pv~y~g~~~~~~L~~fi 360 (699)
++|+++ ..+..|.|..+.+.|..|+
T Consensus 89 ~lf~~g-~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 89 HLYYRS-RGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred EEEECC-ccceEEeCCCCHHHHHhhC
Confidence 999865 4677899999999888773
No 172
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=97.80 E-value=0.00016 Score=64.85 Aligned_cols=95 Identities=13% Similarity=0.186 Sum_probs=69.5
Q ss_pred cccchhhhhhhh-hcCCCcEEEEEEcCCCCCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCC
Q 005374 262 YTKESMGKNFLA-KTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDP 340 (699)
Q Consensus 262 it~~~~~~~Fl~-~~~~~~v~vl~f~~~~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~ 340 (699)
+++...++.|+. .. ..+.|.+|.+........+..+|..+++.+.|+... ...+.+.+++. .|+|++++++
T Consensus 5 i~~~~~~e~~~~~~~--~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~-----~~~~~~~~~~~-~~~i~l~~~~ 76 (102)
T cd03066 5 INSERELQAFENIED--DIKLIGYFKSEDSEHYKAFEEAAEEFHPYIKFFATF-----DSKVAKKLGLK-MNEVDFYEPF 76 (102)
T ss_pred cCCHHHHHHHhcccC--CeEEEEEECCCCCHHHHHHHHHHHhhhcCCEEEEEC-----cHHHHHHcCCC-CCcEEEeCCC
Confidence 445555788886 43 234444665444334556677899999999998764 35678888875 6999999987
Q ss_pred CCCceee-cCCCChhHHHHHHHHhh
Q 005374 341 GVKPVVY-YGSFNNSRLSEVMEQNK 364 (699)
Q Consensus 341 ~~~pv~y-~g~~~~~~L~~fi~~~~ 364 (699)
++.++.| .|..+.+.|.+||..++
T Consensus 77 ~e~~~~y~~g~~~~~~l~~fi~~~~ 101 (102)
T cd03066 77 MEEPVTIPDKPYSEEELVDFVEEHK 101 (102)
T ss_pred CCCCcccCCCCCCHHHHHHHHHHhc
Confidence 7777779 88889999999999875
No 173
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.80 E-value=0.00012 Score=65.74 Aligned_cols=96 Identities=11% Similarity=0.171 Sum_probs=68.8
Q ss_pred cccchhhhhhhhhcCCCcEEEEEE-cC---CCCCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEE
Q 005374 262 YTKESMGKNFLAKTGPHKVKVIFF-SK---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL 337 (699)
Q Consensus 262 it~~~~~~~Fl~~~~~~~v~vl~f-~~---~~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlf 337 (699)
+++.+ ++..+.. .+++.+|.| .+ .|....+.+..+|..+.+.+.|+.+.........++++|+|.++|++++|
T Consensus 5 l~~~~-~~~~i~~--~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~ 81 (109)
T cd03002 5 LTPKN-FDKVVHN--TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVF 81 (109)
T ss_pred cchhh-HHHHHhc--CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEE
Confidence 34333 5555543 244445544 43 23445678888888888888888887654335789999999999999999
Q ss_pred cCCC----CCceeecCCCChhHHHHHH
Q 005374 338 KDPG----VKPVVYYGSFNNSRLSEVM 360 (699)
Q Consensus 338 k~~~----~~pv~y~g~~~~~~L~~fi 360 (699)
++++ ..+..|.|..+.+.|.+||
T Consensus 82 ~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 82 RPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred eCCCcccccccccccCccCHHHHHHHh
Confidence 9875 2456689999999999997
No 174
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.79 E-value=4.2e-05 Score=75.72 Aligned_cols=88 Identities=11% Similarity=0.068 Sum_probs=62.4
Q ss_pred EEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchh----------hhhHHHHhCCCCcccccccccEEEEcCCC
Q 005374 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR----------LATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (699)
Q Consensus 157 lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~----------~~~~L~~k~~i~~~f~V~gyPTl~~f~~g 226 (699)
+|.||++||++|++..|..+++++++. +.|-.|+.++.. ....+.+.|++. +.++||.+++...
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~----~~~iPttfLId~~ 146 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNI----PVATPTTFLVNVN 146 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCC----CCCCCeEEEEeCC
Confidence 778999999999999999999999974 455556665331 112245566521 2599999999544
Q ss_pred CCCCCccccccCCcCHHHHHHHHHHH
Q 005374 227 CKSSDCMTRFEGELSVDAVTDWFATA 252 (699)
Q Consensus 227 ~~~~~~~~~Y~G~rs~~~Iv~fi~k~ 252 (699)
... ....+.|..+.+.|.+.+.+.
T Consensus 147 G~i--~~~~~~G~~~~~~L~~~I~~l 170 (181)
T PRK13728 147 TLE--ALPLLQGATDAAGFMARMDTV 170 (181)
T ss_pred CcE--EEEEEECCCCHHHHHHHHHHH
Confidence 321 123578999999998887766
No 175
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=97.76 E-value=0.00015 Score=65.33 Aligned_cols=93 Identities=14% Similarity=0.217 Sum_probs=67.0
Q ss_pred cccchhhhhhhhhcCCCcEEEEEEcCCCCCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEE----
Q 005374 262 YTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL---- 337 (699)
Q Consensus 262 it~~~~~~~Fl~~~~~~~v~vl~f~~~~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlf---- 337 (699)
+++.+.++.|+.. ...+.|.+|.+..+.....+..+|..+++.+.|+... ...+.+.+++ .|++++|
T Consensus 5 i~s~~~l~~f~~~--~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~-----~~~~~~~~~~--~~~ivl~~p~~ 75 (104)
T cd03069 5 LRTEAEFEKFLSD--DDASVVGFFEDEDSKLLSEFLKAADTLRESFRFAHTS-----DKQLLEKYGY--GEGVVLFRPPR 75 (104)
T ss_pred cCCHHHHHHHhcc--CCcEEEEEEcCCCchHHHHHHHHHHhhhhcCEEEEEC-----hHHHHHhcCC--CCceEEEechh
Confidence 4444457788863 2334444665544344566677899999999998774 3567889998 5889999
Q ss_pred --cCCCCCceeecCCCChhHHHHHHHHh
Q 005374 338 --KDPGVKPVVYYGSFNNSRLSEVMEQN 363 (699)
Q Consensus 338 --k~~~~~pv~y~g~~~~~~L~~fi~~~ 363 (699)
+.++...++|.|+++.+.|.+||..|
T Consensus 76 ~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 76 LSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred hhcccCcccccccCcCCHHHHHHHHHhh
Confidence 44566667799999989999999876
No 176
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=97.76 E-value=2.9e-05 Score=68.00 Aligned_cols=44 Identities=16% Similarity=0.122 Sum_probs=36.7
Q ss_pred CCcEEEEEeccCCCCCCCcchHHHHHHHHhh--cccceeeeeccch
Q 005374 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLE--GIANTGMVELGDI 196 (699)
Q Consensus 153 ~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~--g~~~va~Vdc~~~ 196 (699)
+++++|.|||+||++|+...|...++.+.++ +.+.|-.|++++.
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~ 46 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDED 46 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSS
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCC
Confidence 4789999999999999999999999999998 5557888887743
No 177
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.74 E-value=4.9e-05 Score=58.93 Aligned_cols=63 Identities=24% Similarity=0.360 Sum_probs=48.7
Q ss_pred EEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEEEcCCC
Q 005374 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (699)
Q Consensus 157 lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~f~~g 226 (699)
++.||++||++|.++.+.+.++ ....+...+..++++...........++ +.++|+++++..|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYG------VGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCC------CccccEEEEEeCC
Confidence 5789999999999999999998 4555566999999996554222223555 6699999999876
No 178
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.72 E-value=5.5e-05 Score=93.79 Aligned_cols=92 Identities=12% Similarity=0.118 Sum_probs=67.5
Q ss_pred CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcc-cceeeeecc---c--h-hh------------------hhHHHHhC
Q 005374 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG---D--I-RL------------------ATHLAERK 206 (699)
Q Consensus 152 ~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~-~~va~Vdc~---~--~-~~------------------~~~L~~k~ 206 (699)
.++++||.|||+||++|+...|.++++++++++. +.|..|.+. + . .. ...+.+++
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 4789999999999999999999999999999764 244444321 1 1 01 11234444
Q ss_pred CCCcccccccccEEEEc-CCCCCCCCccccccCCcCHHHHHHHHHHHh
Q 005374 207 PIGQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATAI 253 (699)
Q Consensus 207 ~i~~~f~V~gyPTl~~f-~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~v 253 (699)
+ |+++||++++ ++|.. ...+.|....+.|.+++.+.+
T Consensus 499 ~------V~~iPt~ilid~~G~i----v~~~~G~~~~~~l~~~l~~~l 536 (1057)
T PLN02919 499 G------VSSWPTFAVVSPNGKL----IAQLSGEGHRKDLDDLVEAAL 536 (1057)
T ss_pred C------CCccceEEEECCCCeE----EEEEecccCHHHHHHHHHHHH
Confidence 4 8899999999 56753 245789999999999987663
No 179
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=97.72 E-value=0.00016 Score=64.24 Aligned_cols=91 Identities=14% Similarity=0.241 Sum_probs=64.7
Q ss_pred cccchhhhhhhhhcCCCcEEEE-EEcC---CCCCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEE
Q 005374 262 YTKESMGKNFLAKTGPHKVKVI-FFSK---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL 337 (699)
Q Consensus 262 it~~~~~~~Fl~~~~~~~v~vl-~f~~---~~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlf 337 (699)
++..+ ++..+.. .++.+| |+.. .|....+.+..+|..+.+.+.|+.|.... ...++++|+|.++||+++|
T Consensus 6 l~~~~-f~~~v~~---~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~ 79 (101)
T cd03003 6 LDRGD-FDAAVNS---GEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD--DRMLCRSQGVNSYPSLYVF 79 (101)
T ss_pred cCHhh-HHHHhcC---CCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCc--cHHHHHHcCCCccCEEEEE
Confidence 44333 4555532 344455 4443 23445788888999998888898887543 4789999999999999999
Q ss_pred cCCCCCceeecCCCChhHHHHH
Q 005374 338 KDPGVKPVVYYGSFNNSRLSEV 359 (699)
Q Consensus 338 k~~~~~pv~y~g~~~~~~L~~f 359 (699)
+++ .....|.|..+.+.|.+|
T Consensus 80 ~~g-~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 80 PSG-MNPEKYYGDRSKESLVKF 100 (101)
T ss_pred cCC-CCcccCCCCCCHHHHHhh
Confidence 865 445568999998888876
No 180
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.68 E-value=4.1e-05 Score=86.81 Aligned_cols=98 Identities=18% Similarity=0.268 Sum_probs=71.2
Q ss_pred CCcccccCC--CcEEEEEeccCCCCCCCcch-HHHHH--HHHhhcccceeeeeccc-hhhhhHHHHhCCCCccccccccc
Q 005374 145 DFPSIFHDS--KPWLIQVYSDGSYLCGQFSG-AWKTI--AALLEGIANTGMVELGD-IRLATHLAERKPIGQIFFRRGLP 218 (699)
Q Consensus 145 nF~~~v~~~--~~~lV~FYapwC~hCk~l~p-~~~~~--A~~L~g~~~va~Vdc~~-~~~~~~L~~k~~i~~~f~V~gyP 218 (699)
..++.+.++ ++++|.|||+||-.||.+++ .+.+. +..+.+ +.+-++|.|+ ++...++-++++ +-|.|
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~-~vlLqaDvT~~~p~~~~lLk~~~------~~G~P 536 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQD-VVLLQADVTANDPAITALLKRLG------VFGVP 536 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCC-eEEEEeeecCCCHHHHHHHHHcC------CCCCC
Confidence 344445334 49999999999999999887 34333 333333 3677889884 556666788887 77999
Q ss_pred EEEEcCCCCCCCCccccccCCcCHHHHHHHHHHH
Q 005374 219 SLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (699)
Q Consensus 219 Tl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~ 252 (699)
++++|..+... +..-.|-.+++.+.+++++.
T Consensus 537 ~~~ff~~~g~e---~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 537 TYLFFGPQGSE---PEILTGFLTADAFLEHLERA 567 (569)
T ss_pred EEEEECCCCCc---CcCCcceecHHHHHHHHHHh
Confidence 99999955443 23368999999999999875
No 181
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.66 E-value=3.7e-05 Score=66.04 Aligned_cols=64 Identities=17% Similarity=0.252 Sum_probs=47.1
Q ss_pred cCCCcEEEEEeccCCCCCCCcchHH---HHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEEEcC
Q 005374 151 HDSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFP 224 (699)
Q Consensus 151 ~~~~~~lV~FYapwC~hCk~l~p~~---~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~f~ 224 (699)
.+++++||.||++||+.|+.+.... .++.+.+.....+..||.++......+. .+++|+++++.
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~----------~~~~P~~~~ld 81 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFD----------RQGYPTFFFLD 81 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHH----------HCSSSEEEEEE
T ss_pred HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhC----------CccCCEEEEeC
Confidence 4799999999999999999998776 4555556666688888987443322111 23899999874
No 182
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=97.65 E-value=0.00019 Score=64.64 Aligned_cols=93 Identities=12% Similarity=0.174 Sum_probs=63.6
Q ss_pred cccchhhhhhhhhcCCCcEEEEEE-cC---CCCCchHHHHHHHHhcc------CCceEEEEEccccccHhHHhhcCCCCC
Q 005374 262 YTKESMGKNFLAKTGPHKVKVIFF-SK---TGERASPFVRQISRNYW------AYASFAFVLWREEESSIWWNTFEVESA 331 (699)
Q Consensus 262 it~~~~~~~Fl~~~~~~~v~vl~f-~~---~~~~~~~~~~~~A~~~~------~~~~Fg~V~~~~~~s~~l~~kf~V~~~ 331 (699)
+++++ +++.+.. +++.+|.| .+ .|....+.+..+|..+. +.+.|+.|.... ..+++++|+|.++
T Consensus 6 l~~~~-f~~~i~~---~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~--~~~l~~~~~v~~~ 79 (108)
T cd02996 6 LTSGN-IDDILQS---AELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK--ESDIADRYRINKY 79 (108)
T ss_pred cCHhh-HHHHHhc---CCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC--CHHHHHhCCCCcC
Confidence 44444 5555543 34555555 33 23445677777776653 246777776433 4789999999999
Q ss_pred CEEEEEcCCCCCceeecCCCChhHHHHHH
Q 005374 332 PAIVFLKDPGVKPVVYYGSFNNSRLSEVM 360 (699)
Q Consensus 332 PtIvlfk~~~~~pv~y~g~~~~~~L~~fi 360 (699)
|++++|+++......|.|..+.+.|.+||
T Consensus 80 Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 80 PTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred CEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 99999997654456688999999998885
No 183
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.62 E-value=0.00028 Score=62.36 Aligned_cols=89 Identities=11% Similarity=0.106 Sum_probs=64.3
Q ss_pred hhhhhhhcCCCcEEEE-EEcCCC---CCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCCC
Q 005374 268 GKNFLAKTGPHKVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVK 343 (699)
Q Consensus 268 ~~~Fl~~~~~~~v~vl-~f~~~~---~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~~ 343 (699)
++..+... ..+.++ |+.+-| ....+.+..++..+.+.+.|+.+.... ...++++|+|.+.|++++|+++...
T Consensus 10 ~~~~i~~~--~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~--~~~~~~~~~i~~~P~~~~~~~~~~~ 85 (103)
T cd03001 10 FDKKVLNS--DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADV--HQSLAQQYGVRGFPTIKVFGAGKNS 85 (103)
T ss_pred HHHHHhcC--CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcc--hHHHHHHCCCCccCEEEEECCCCcc
Confidence 55555432 333444 444322 234677777888888888888886432 4679999999999999999877556
Q ss_pred ceeecCCCChhHHHHHH
Q 005374 344 PVVYYGSFNNSRLSEVM 360 (699)
Q Consensus 344 pv~y~g~~~~~~L~~fi 360 (699)
+..|.|..+.+.|.+|+
T Consensus 86 ~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 86 PQDYQGGRTAKAIVSAA 102 (103)
T ss_pred eeecCCCCCHHHHHHHh
Confidence 67789999999999986
No 184
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.60 E-value=0.00011 Score=60.36 Aligned_cols=71 Identities=8% Similarity=0.035 Sum_probs=50.5
Q ss_pred EEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhh-hhHHHHhCCCCcccccccccEEEEcCCCCCCCCcccc
Q 005374 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTR 235 (699)
Q Consensus 157 lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~-~~~L~~k~~i~~~f~V~gyPTl~~f~~g~~~~~~~~~ 235 (699)
+..|+++||++|+++.+.+++. .+.+..+|.+++.. ...+++.++ +.++|+|++. |. .
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~~~------~~~vP~~~~~--~~-------~ 60 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK------GIAFEEIDVEKDSAAREEVLKVLG------QRGVPVIVIG--HK-------I 60 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC------CCeEEEEeccCCHHHHHHHHHHhC------CCcccEEEEC--CE-------E
Confidence 4689999999999988777652 24678889885533 234667777 5699999985 42 2
Q ss_pred ccCCcCHHHHHHHH
Q 005374 236 FEGELSVDAVTDWF 249 (699)
Q Consensus 236 Y~G~rs~~~Iv~fi 249 (699)
..| .+.+.|.+|+
T Consensus 61 ~~g-~~~~~i~~~i 73 (74)
T TIGR02196 61 IVG-FDPEKLDQLL 73 (74)
T ss_pred Eee-CCHHHHHHHh
Confidence 355 4677887775
No 185
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.56 E-value=0.00015 Score=63.34 Aligned_cols=68 Identities=21% Similarity=0.267 Sum_probs=54.4
Q ss_pred CCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeecc-chhhhhHHHHhCCCCcccccccccEEEEcCCCC
Q 005374 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELG-DIRLATHLAERKPIGQIFFRRGLPSLVAFPPGC 227 (699)
Q Consensus 153 ~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~-~~~~~~~L~~k~~i~~~f~V~gyPTl~~f~~g~ 227 (699)
+.+.+|.||++||++|+.+.|...++++.+.....+..+|.. .++. ++..++.. +..+|++.++.++.
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~----~~~~p~~~~~~~~~ 100 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPD---LAAEFGVA----VRSIPTLLLFKDGK 100 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChH---HHHHHhhh----hccCCeEEEEeCcc
Confidence 778999999999999999999999999999875678888886 3434 55665511 45889999888774
No 186
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.50 E-value=0.00035 Score=63.22 Aligned_cols=97 Identities=9% Similarity=0.147 Sum_probs=64.1
Q ss_pred cccchhhhhhhhhcCCCcEEEE-EEcC---CCCCchHHHHHHHHhccCC-ceEEEEEccccccHhHHh-hcCCCCCCEEE
Q 005374 262 YTKESMGKNFLAKTGPHKVKVI-FFSK---TGERASPFVRQISRNYWAY-ASFAFVLWREEESSIWWN-TFEVESAPAIV 335 (699)
Q Consensus 262 it~~~~~~~Fl~~~~~~~v~vl-~f~~---~~~~~~~~~~~~A~~~~~~-~~Fg~V~~~~~~s~~l~~-kf~V~~~PtIv 335 (699)
++..+ ++..+.....+++.++ |+.+ .|....+.+..++..+.+. +.|+.|..... ...++. .|+|..+||++
T Consensus 6 ~~~~~-~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~-~~~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 6 LSRAE-IEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE-QREFAKEELQLKSFPTIL 83 (109)
T ss_pred ccHHH-HHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc-chhhHHhhcCCCcCCEEE
Confidence 44333 5555543222344455 4443 2344567777888888763 77888764331 245665 59999999999
Q ss_pred EEcCCCCCceeecCC-CChhHHHHHH
Q 005374 336 FLKDPGVKPVVYYGS-FNNSRLSEVM 360 (699)
Q Consensus 336 lfk~~~~~pv~y~g~-~~~~~L~~fi 360 (699)
+|++++..+..|.|+ .+.++|..||
T Consensus 84 ~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 84 FFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEcCCCCCceeccCCCCCHHHHHhhC
Confidence 999877777889985 7888888875
No 187
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.50 E-value=0.00057 Score=60.02 Aligned_cols=90 Identities=17% Similarity=0.176 Sum_probs=63.6
Q ss_pred hhhhhhhcCCCcEEEEEE-cCC---CCCchHHHHHHHHhccC--CceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCC
Q 005374 268 GKNFLAKTGPHKVKVIFF-SKT---GERASPFVRQISRNYWA--YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG 341 (699)
Q Consensus 268 ~~~Fl~~~~~~~v~vl~f-~~~---~~~~~~~~~~~A~~~~~--~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~ 341 (699)
++..+. .+++.++.| .+. +....+.+..++..+.+ .+.|+.+... ....++++|+|...|++++|++++
T Consensus 6 ~~~~~~---~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~~i~~~P~~~~~~~~~ 80 (102)
T TIGR01126 6 FDDIVL---SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT--AEKDLASRFGVSGFPTIKFFPKGK 80 (102)
T ss_pred HHHHhc---cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc--chHHHHHhCCCCcCCEEEEecCCC
Confidence 444443 244555555 332 23345667777777765 4677766532 247899999999999999999876
Q ss_pred CCceeecCCCChhHHHHHHHHh
Q 005374 342 VKPVVYYGSFNNSRLSEVMEQN 363 (699)
Q Consensus 342 ~~pv~y~g~~~~~~L~~fi~~~ 363 (699)
. +..|.|..+.+.|..||+++
T Consensus 81 ~-~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 81 K-PVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred c-ceeecCCCCHHHHHHHHHhc
Confidence 5 77789999999999999875
No 188
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=97.49 E-value=0.00025 Score=65.81 Aligned_cols=42 Identities=10% Similarity=-0.062 Sum_probs=35.3
Q ss_pred CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcc-cceeeeec
Q 005374 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVEL 193 (699)
Q Consensus 152 ~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~-~~va~Vdc 193 (699)
.+++++|.||+.||+.|.+..|.++++.++++.. +.+..|++
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~ 64 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHS 64 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEecc
Confidence 4689999999999999999999999999999753 35555654
No 189
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=97.49 E-value=0.00047 Score=71.34 Aligned_cols=98 Identities=9% Similarity=-0.093 Sum_probs=64.9
Q ss_pred CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcc-cceeeeecc--------chhhhhHHH-HhCCCCcc----------
Q 005374 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG--------DIRLATHLA-ERKPIGQI---------- 211 (699)
Q Consensus 152 ~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~-~~va~Vdc~--------~~~~~~~L~-~k~~i~~~---------- 211 (699)
.+++++|.||++||+.|....|.++++.+++++. +.|..|+|+ ........+ +++++.=+
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 4689999999999999999999999999999765 378888884 122333443 45443200
Q ss_pred -----cc-------------cccccEEEEcCCCCCCCCccccccCCcCHHHHHHHHHHH
Q 005374 212 -----FF-------------RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (699)
Q Consensus 212 -----f~-------------V~gyPTl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~ 252 (699)
|. |++.|+.+++-..++ ....|.|..+.+.|...+.+.
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~Gk---Vv~~~~G~~~~~~le~~I~~l 233 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGK---VVERYPPTTSPFQIEKDIQKL 233 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccCceEEEECCCCc---EEEEECCCCCHHHHHHHHHHH
Confidence 00 223466666633322 135677888888777777665
No 190
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.46 E-value=0.00043 Score=69.20 Aligned_cols=91 Identities=18% Similarity=0.224 Sum_probs=54.9
Q ss_pred CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCC-----------cccccccccEE
Q 005374 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIG-----------QIFFRRGLPSL 220 (699)
Q Consensus 152 ~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~-----------~~f~V~gyPTl 220 (699)
.+++++|.||++||+.|+...|...++.+... ..+..|+.+......+.++++++. +.|.|.+.|+.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~--~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~ 150 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE--TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG 150 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcC--CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence 46799999999999999999999999876542 234444433222222333333321 34557899987
Q ss_pred EEcC-CCCCCCCccccccCC-cCHHHHHHHHH
Q 005374 221 VAFP-PGCKSSDCMTRFEGE-LSVDAVTDWFA 250 (699)
Q Consensus 221 ~~f~-~g~~~~~~~~~Y~G~-rs~~~Iv~fi~ 250 (699)
+++- +|. ..+.|. .+.+.+-+.+.
T Consensus 151 ~lID~~G~------I~~~g~~~~~~~le~ll~ 176 (189)
T TIGR02661 151 VLLDQDGK------IRAKGLTNTREHLESLLE 176 (189)
T ss_pred EEECCCCe------EEEccCCCCHHHHHHHHH
Confidence 7764 453 234453 23344444443
No 191
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.44 E-value=0.0014 Score=59.93 Aligned_cols=90 Identities=18% Similarity=0.227 Sum_probs=61.1
Q ss_pred eEEEEEecc----CChhHHHHHHHHHHHHHhhccCcccccccccccchhHHHhcC-CCeEEEEEEeCcchHHHHHHh-cc
Q 005374 406 WYCVILAGR----LSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFR-NKRLTFAWLDGEAQDRYCSFY-LF 479 (699)
Q Consensus 406 ~lCvI~~~~----~~~~~~~~~~~lr~~a~~l~~~~~~~~~~~~~~~~~~a~~~k-~~~l~F~wvd~~~q~~f~~~f-l~ 479 (699)
+++++++.. +.++.+++++.++++|+ +|+ ++ +.|+|+|.+.....+++| +.
T Consensus 16 ~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk----------------------~fk~gk-i~Fv~~D~~~~~~~l~~fgl~ 72 (111)
T cd03073 16 PLVVAYYNVDYSKNPKGTNYWRNRVLKVAK----------------------DFPDRK-LNFAVADKEDFSHELEEFGLD 72 (111)
T ss_pred CeEEEEEeccccCChhHHHHHHHHHHHHHH----------------------HCcCCe-EEEEEEcHHHHHHHHHHcCCC
Confidence 466666543 45667889999999999 899 55 999999999777778877 33
Q ss_pred ccccccccCCcCCCCCCCeEEEEEeecCCccccceeeccccccccccccccCCccccchhccCCCCChHHHHHHHHHHh
Q 005374 480 SETSFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQLVVRYNGSDEIPQIAKWVSEII 558 (699)
Q Consensus 480 ~~~~~~~c~~~~~~~~~p~lvI~~~rr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~ 558 (699)
.+. ...|.++|+ +... .||. + .++ ++ +.+.|.+|+++++
T Consensus 73 ~~~-----------~~~P~~~i~----~~~~--~KY~------~---~~~-----------~~---t~e~i~~F~~~f~ 111 (111)
T cd03073 73 FSG-----------GEKPVVAIR----TAKG--KKYV------M---EEE-----------FS---DVDALEEFLEDFF 111 (111)
T ss_pred ccc-----------CCCCEEEEE----eCCC--CccC------C---Ccc-----------cC---CHHHHHHHHHHhC
Confidence 321 014988887 4432 4765 2 221 11 4589999998763
No 192
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00041 Score=72.83 Aligned_cols=98 Identities=17% Similarity=0.283 Sum_probs=71.8
Q ss_pred ecccchhhhhhhhhcCCCcEEEEEE-c---CCCCCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEE
Q 005374 261 YYTKESMGKNFLAKTGPHKVKVIFF-S---KTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVF 336 (699)
Q Consensus 261 ~it~~~~~~~Fl~~~~~~~v~vl~f-~---~~~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvl 336 (699)
.+|..++-...+... ...|+++.| . ..|....|.+..++.+|++.+.++.|+.. .++.++..|||.+.|++++
T Consensus 27 dvT~anfe~~V~~~S-~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D--~~p~vAaqfgiqsIPtV~a 103 (304)
T COG3118 27 DVTEANFEQEVIQSS-REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCD--AEPMVAAQFGVQSIPTVYA 103 (304)
T ss_pred echHhHHHHHHHHHc-cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCC--cchhHHHHhCcCcCCeEEE
Confidence 356555333444333 344555555 3 33445788889999999999999999643 2588999999999999999
Q ss_pred EcCCCCCcee-ecCCCChhHHHHHHHHh
Q 005374 337 LKDPGVKPVV-YYGSFNNSRLSEVMEQN 363 (699)
Q Consensus 337 fk~~~~~pv~-y~g~~~~~~L~~fi~~~ 363 (699)
|+++ .|+. |.|..+.+.+..|+..+
T Consensus 104 f~dG--qpVdgF~G~qPesqlr~~ld~~ 129 (304)
T COG3118 104 FKDG--QPVDGFQGAQPESQLRQFLDKV 129 (304)
T ss_pred eeCC--cCccccCCCCcHHHHHHHHHHh
Confidence 9985 4554 78888888999999865
No 193
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.38 E-value=0.00065 Score=76.68 Aligned_cols=102 Identities=10% Similarity=0.139 Sum_probs=71.2
Q ss_pred eecccchhhhhhhhhcCCCcEEEE-EEcC---CCCCchHHHHHHHHhccCC-ceEEEEEccccccHhHHhhcCCCCCCEE
Q 005374 260 FYYTKESMGKNFLAKTGPHKVKVI-FFSK---TGERASPFVRQISRNYWAY-ASFAFVLWREEESSIWWNTFEVESAPAI 334 (699)
Q Consensus 260 ~~it~~~~~~~Fl~~~~~~~v~vl-~f~~---~~~~~~~~~~~~A~~~~~~-~~Fg~V~~~~~~s~~l~~kf~V~~~PtI 334 (699)
+.+++.+ ++..+.....+++.+| |+.+ .|....|.+..+|.+|.+. +.|+.|.........++++|+|.++|||
T Consensus 354 v~L~~~n-f~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTi 432 (463)
T TIGR00424 354 VSLSRPG-IENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTI 432 (463)
T ss_pred EECCHHH-HHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceE
Confidence 3355554 6766642223445555 4433 3445678888899988764 7888887543222334578999999999
Q ss_pred EEEcCCCCCceeec-CCCChhHHHHHHHH
Q 005374 335 VFLKDPGVKPVVYY-GSFNNSRLSEVMEQ 362 (699)
Q Consensus 335 vlfk~~~~~pv~y~-g~~~~~~L~~fi~~ 362 (699)
++|+++...++.|. |..+.+.|..||+.
T Consensus 433 i~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 433 LFFPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred EEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 99999877788897 57999999999974
No 194
>smart00594 UAS UAS domain.
Probab=97.38 E-value=0.00039 Score=64.47 Aligned_cols=98 Identities=11% Similarity=0.121 Sum_probs=66.5
Q ss_pred CCcccc----cCCCcEEEEEeccCCCCCCCcch-HHH--HHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccc
Q 005374 145 DFPSIF----HDSKPWLIQVYSDGSYLCGQFSG-AWK--TIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL 217 (699)
Q Consensus 145 nF~~~v----~~~~~~lV~FYapwC~hCk~l~p-~~~--~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gy 217 (699)
+|++++ ..++..+|.|+++||..|+.+.- .|. ++.+.++....+-.+|.+.... ..++++++ +.+|
T Consensus 15 s~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg-~~l~~~~~------~~~~ 87 (122)
T smart00594 15 SLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEG-QRVSQFYK------LDSF 87 (122)
T ss_pred CHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhH-HHHHHhcC------cCCC
Confidence 455554 36789999999999999999765 232 3445555544555667664433 35899988 6699
Q ss_pred cEEEEcCCCC-CC-CCccccccCCcCHHHHHHHH
Q 005374 218 PSLVAFPPGC-KS-SDCMTRFEGELSVDAVTDWF 249 (699)
Q Consensus 218 PTl~~f~~g~-~~-~~~~~~Y~G~rs~~~Iv~fi 249 (699)
|++.++.+.. .. ........|..+.+.++.++
T Consensus 88 P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 88 PYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred CEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 9999995432 10 01123568999999998875
No 195
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.38 E-value=0.0016 Score=61.30 Aligned_cols=94 Identities=15% Similarity=0.114 Sum_probs=69.0
Q ss_pred hhhhhhhhcCCCcEEEEEEcCCCC------CchHHHHHHHHhccC-CceEEEEEccccccHhHHhhcCCCCCCEEEEEcC
Q 005374 267 MGKNFLAKTGPHKVKVIFFSKTGE------RASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVESAPAIVFLKD 339 (699)
Q Consensus 267 ~~~~Fl~~~~~~~v~vl~f~~~~~------~~~~~~~~~A~~~~~-~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~ 339 (699)
.++.|+...+ ..||||..... .....+..+|.+|.+ ++.|+.|.... ...|+.+|||.+.||+++|++
T Consensus 26 ~~~~~~~~~~---~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~--~~~LA~~fgV~siPTLl~Fkd 100 (132)
T PRK11509 26 RLDDWLTQAP---DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ--SEAIGDRFGVFRFPATLVFTG 100 (132)
T ss_pred cHHHHHhCCC---cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCC--CHHHHHHcCCccCCEEEEEEC
Confidence 3788887544 56777743221 235666779999974 48899987543 578999999999999999998
Q ss_pred CCCCceeecCCCChhHHHHHHHHhhcc
Q 005374 340 PGVKPVVYYGSFNNSRLSEVMEQNKLQ 366 (699)
Q Consensus 340 ~~~~pv~y~g~~~~~~L~~fi~~~~~~ 366 (699)
+.. .-...|..+.+.+.+||+...-.
T Consensus 101 Gk~-v~~i~G~~~k~~l~~~I~~~L~~ 126 (132)
T PRK11509 101 GNY-RGVLNGIHPWAELINLMRGLVEP 126 (132)
T ss_pred CEE-EEEEeCcCCHHHHHHHHHHHhcC
Confidence 643 23357888999999999876433
No 196
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.37 E-value=0.00039 Score=63.84 Aligned_cols=105 Identities=18% Similarity=0.234 Sum_probs=73.3
Q ss_pred EEecCCCCcccccCCCcEEEEEeccCCCCCCCcchHHHHHH-HHhhcc--cceeeeeccc--hhhhhHHHHhCCCCcccc
Q 005374 139 NVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIA-ALLEGI--ANTGMVELGD--IRLATHLAERKPIGQIFF 213 (699)
Q Consensus 139 ~~Lt~~nF~~~v~~~~~~lV~FYapwC~hCk~l~p~~~~~A-~~L~g~--~~va~Vdc~~--~~~~~~L~~k~~i~~~f~ 213 (699)
+.|+.-+|+++|...+..||.|=.-. .--.-..+|.++| +..+.. .-||.|-..+ ++....|+++|++.
T Consensus 7 v~LD~~tFdKvi~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~---- 80 (126)
T PF07912_consen 7 VPLDELTFDKVIPKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKID---- 80 (126)
T ss_dssp EEESTTHHHHHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-S----
T ss_pred eeccceehhheeccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCC----
Confidence 78999999999998999999995432 2223456899999 444332 2566666542 22334599999965
Q ss_pred cccccEEEEcCCCCCCCCccccc--cCCcCHHHHHHHHHHH
Q 005374 214 RRGLPSLVAFPPGCKSSDCMTRF--EGELSVDAVTDWFATA 252 (699)
Q Consensus 214 V~gyPTl~~f~~g~~~~~~~~~Y--~G~rs~~~Iv~fi~k~ 252 (699)
-..||.+++|..+.. .+..| .|+.++++|..|+..+
T Consensus 81 ke~fPv~~LF~~~~~---~pv~~p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 81 KEDFPVIYLFVGDKE---EPVRYPFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp CCC-SEEEEEESSTT---SEEEE-TCS-S-HHHHHHHHHHT
T ss_pred cccCCEEEEecCCCC---CCccCCccCCccHHHHHHHHHhC
Confidence 468999999995544 57878 8999999999999887
No 197
>PTZ00056 glutathione peroxidase; Provisional
Probab=97.34 E-value=0.00084 Score=67.79 Aligned_cols=57 Identities=7% Similarity=0.099 Sum_probs=45.6
Q ss_pred CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcc-cceeeeecc--------chhhhhHHHHhCCC
Q 005374 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG--------DIRLATHLAERKPI 208 (699)
Q Consensus 152 ~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~-~~va~Vdc~--------~~~~~~~L~~k~~i 208 (699)
.++++||.|+|.||+.|.+-.|..+++.+++++. +.|..|+|+ ........++++++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~ 103 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKI 103 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCC
Confidence 4689999999999999999999999999999765 378888874 22344556777764
No 198
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.27 E-value=0.002 Score=56.96 Aligned_cols=61 Identities=25% Similarity=0.426 Sum_probs=44.1
Q ss_pred EEEEEecc-CChhHHHHHHHHHHHHHhhccCcccccccccccchhHHHhcCCCeEEEEEEeCcchHHHHHHhcccccccc
Q 005374 407 YCVILAGR-LSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRLTFAWLDGEAQDRYCSFYLFSETSFE 485 (699)
Q Consensus 407 lCvI~~~~-~~~~~~~~~~~lr~~a~~l~~~~~~~~~~~~~~~~~~a~~~k~~~l~F~wvd~~~q~~f~~~fl~~~~~~~ 485 (699)
.+++++.. ..+..+.++..++++|+ +|+++ +.|+|+|++.+.++++.|.-.+
T Consensus 14 ~~~~~f~~~~~~~~~~~~~~~~~vA~----------------------~~~~~-v~f~~vd~~~~~~~~~~~~i~~---- 66 (103)
T cd02982 14 PLLVLFYNKDDSESEELRERFKEVAK----------------------KFKGK-LLFVVVDADDFGRHLEYFGLKE---- 66 (103)
T ss_pred CEEEEEEcCChhhHHHHHHHHHHHHH----------------------HhCCe-EEEEEEchHhhHHHHHHcCCCh----
Confidence 45555543 33456788888888888 78864 9999999999889998872221
Q ss_pred ccCCcCCCCCCCeEEEE
Q 005374 486 TCGARRDMSDVPRLFIV 502 (699)
Q Consensus 486 ~c~~~~~~~~~p~lvI~ 502 (699)
...|.++++
T Consensus 67 --------~~~P~~~~~ 75 (103)
T cd02982 67 --------EDLPVIAII 75 (103)
T ss_pred --------hhCCEEEEE
Confidence 133999987
No 199
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=97.27 E-value=0.0013 Score=57.63 Aligned_cols=81 Identities=15% Similarity=0.255 Sum_probs=58.6
Q ss_pred CcEEEEEE-cC---CCCCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCCCceeecCCCCh
Q 005374 278 HKVKVIFF-SK---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN 353 (699)
Q Consensus 278 ~~v~vl~f-~~---~~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~~~~ 353 (699)
+++.+|.| .+ .|....+.+..++..+.+.+.|+.|.... ...++++|+|.+.|++++|++ +.....+.|..+.
T Consensus 12 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~i~~~Pt~~~~~~-g~~~~~~~g~~~~ 88 (96)
T cd02956 12 QVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA--QPQIAQQFGVQALPTVYLFAA-GQPVDGFQGAQPE 88 (96)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC--CHHHHHHcCCCCCCEEEEEeC-CEEeeeecCCCCH
Confidence 34555544 33 23445677777888887777788886433 478999999999999999985 4333347888888
Q ss_pred hHHHHHHH
Q 005374 354 SRLSEVME 361 (699)
Q Consensus 354 ~~L~~fi~ 361 (699)
+.|.+|++
T Consensus 89 ~~l~~~l~ 96 (96)
T cd02956 89 EQLRQMLD 96 (96)
T ss_pred HHHHHHhC
Confidence 89988873
No 200
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.24 E-value=0.00047 Score=58.47 Aligned_cols=73 Identities=23% Similarity=0.380 Sum_probs=53.1
Q ss_pred EEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEEEcCCCCCCCCcccccc
Q 005374 158 IQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFE 237 (699)
Q Consensus 158 V~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~f~~g~~~~~~~~~Y~ 237 (699)
|++++++|++|..+...+++++..+. +.+-.++..+ ...+ .+|| |.+.|++++ +|. ..|.
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~~---~~~~-~~yg------v~~vPalvI--ng~------~~~~ 62 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIED---FEEI-EKYG------VMSVPALVI--NGK------VVFV 62 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETTT---HHHH-HHTT-------SSSSEEEE--TTE------EEEE
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEccC---HHHH-HHcC------CCCCCEEEE--CCE------EEEE
Confidence 56689999999999999999999883 4555555543 3335 8888 779999955 563 4678
Q ss_pred C-CcCHHHHHHHHH
Q 005374 238 G-ELSVDAVTDWFA 250 (699)
Q Consensus 238 G-~rs~~~Iv~fi~ 250 (699)
| ..+.+.|..|+.
T Consensus 63 G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 63 GRVPSKEELKELLE 76 (76)
T ss_dssp SS--HHHHHHHHHH
T ss_pred ecCCCHHHHHHHhC
Confidence 8 778888888873
No 201
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.23 E-value=0.00071 Score=59.45 Aligned_cols=86 Identities=13% Similarity=0.189 Sum_probs=66.8
Q ss_pred cccccCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEEEcCCC
Q 005374 147 PSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (699)
Q Consensus 147 ~~~v~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~f~~g 226 (699)
+..+..+.+++|-|+.++|+ .....|.++|..+.....+|.+.-. . ++++++ + .-|++++|++.
T Consensus 11 ~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~~~---~---~~~~~~------~-~~~~i~l~~~~ 74 (97)
T cd02981 11 EKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTSDK---E---VAKKLK------V-KPGSVVLFKPF 74 (97)
T ss_pred HHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEChH---H---HHHHcC------C-CCCceEEeCCc
Confidence 33467889999999999887 5677999999999877788777733 3 666665 3 34999999875
Q ss_pred CCCCCccccccCCcCHHHHHHHHHH
Q 005374 227 CKSSDCMTRFEGELSVDAVTDWFAT 251 (699)
Q Consensus 227 ~~~~~~~~~Y~G~rs~~~Iv~fi~k 251 (699)
.. ....|.|..+.+.|.+|+..
T Consensus 75 ~~---~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 75 EE---EPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred cc---CCccCCCCCCHHHHHHHHHh
Confidence 32 35779999999999999864
No 202
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=97.23 E-value=0.0025 Score=58.18 Aligned_cols=101 Identities=16% Similarity=0.144 Sum_probs=66.3
Q ss_pred HHHHHHHHhccCCcceecccchhhhhhhhhcCCCcEEEEEEcCC------CCCchHHHHHHHHhccCCceEEEEEccccc
Q 005374 245 VTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKT------GERASPFVRQISRNYWAYASFAFVLWREEE 318 (699)
Q Consensus 245 Iv~fi~k~v~~lP~~~~it~~~~~~~Fl~~~~~~~v~vl~f~~~------~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~ 318 (699)
+++++... ...|. ++..+ +++++.. +.+.|++|... |....|.+..+|.+|.+.+.|+.|...+
T Consensus 2 ~~~~~~~~-~~~~~---~~~~~-~~~~~~~---~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~-- 71 (111)
T cd02965 2 LVARLQTR-HGWPR---VDAAT-LDDWLAA---GGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRAD-- 71 (111)
T ss_pred HhHHHHHh-cCCcc---ccccc-HHHHHhC---CCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCC--
Confidence 34555443 12443 33333 6666643 34667777432 2335688888999998888898887543
Q ss_pred cHhHHhhcCCCCCCEEEEEcCCCCCceeecCCCChhHH
Q 005374 319 SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL 356 (699)
Q Consensus 319 s~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~~~~~~L 356 (699)
...++.+|+|.+.||+++|+++. ..-...|..+.+.+
T Consensus 72 ~~~la~~f~V~sIPTli~fkdGk-~v~~~~G~~~~~e~ 108 (111)
T cd02965 72 EQALAARFGVLRTPALLFFRDGR-YVGVLAGIRDWDEY 108 (111)
T ss_pred CHHHHHHcCCCcCCEEEEEECCE-EEEEEeCccCHHHH
Confidence 46899999999999999999753 22234676666554
No 203
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=97.19 E-value=0.0025 Score=57.83 Aligned_cols=95 Identities=13% Similarity=0.160 Sum_probs=66.1
Q ss_pred cccchhhhhhhhhcCCCcEEEEEEcCCCCCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEE----
Q 005374 262 YTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL---- 337 (699)
Q Consensus 262 it~~~~~~~Fl~~~~~~~v~vl~f~~~~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlf---- 337 (699)
+++.+.++.|+... +..++|.+|.+..+.....+..+|..+++.+.|+.+. ...+..++++. .|.+++|
T Consensus 5 i~s~~ele~f~~~~-~~~~VVG~F~~~~~~~~~~F~~vA~~~Rdd~~F~~t~-----~~~~~~~~~~~-~~~vvl~rp~~ 77 (107)
T cd03068 5 LQTLKQVQEFLRDG-DDVIIIGVFSGEEDPAYQLYQDAANSLREDYKFHHTF-----DSEIFKSLKVS-PGQLVVFQPEK 77 (107)
T ss_pred cCCHHHHHHHHhcC-CCEEEEEEECCCCCHHHHHHHHHHHhcccCCEEEEEC-----hHHHHHhcCCC-CCceEEECcHH
Confidence 44545577777542 1234444665543334566677899999999998764 35678888886 5888888
Q ss_pred --cCCCCCceeecCC-CChhH-HHHHHHHh
Q 005374 338 --KDPGVKPVVYYGS-FNNSR-LSEVMEQN 363 (699)
Q Consensus 338 --k~~~~~pv~y~g~-~~~~~-L~~fi~~~ 363 (699)
+.++.+.++|.|. .+.++ |.+||..|
T Consensus 78 ~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 78 FQSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred HhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 5677788889887 67766 99999875
No 204
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.18 E-value=0.0017 Score=57.31 Aligned_cols=82 Identities=17% Similarity=0.193 Sum_probs=58.3
Q ss_pred CcEEEEEE-cCC---CCCchHHHHHHHHhcc--CCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCCCceeecCCC
Q 005374 278 HKVKVIFF-SKT---GERASPFVRQISRNYW--AYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSF 351 (699)
Q Consensus 278 ~~v~vl~f-~~~---~~~~~~~~~~~A~~~~--~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~~ 351 (699)
.++.++.| .+. +....+.+..++..+. +.+.|+.+..... ...++++|+|.++|++++|++++.....|.|..
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~ 96 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA-NKDLAKKYGVSGFPTLKFFPKGSTEPVKYEGGR 96 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc-chhhHHhCCCCCcCEEEEEeCCCCCccccCCcc
Confidence 33545544 332 3335677777887776 3466666653321 468999999999999999998766677789999
Q ss_pred ChhHHHHHH
Q 005374 352 NNSRLSEVM 360 (699)
Q Consensus 352 ~~~~L~~fi 360 (699)
+.+.|.+||
T Consensus 97 ~~~~l~~~i 105 (105)
T cd02998 97 DLEDLVKFV 105 (105)
T ss_pred CHHHHHhhC
Confidence 999998885
No 205
>PLN02412 probable glutathione peroxidase
Probab=97.15 E-value=0.0019 Score=63.25 Aligned_cols=43 Identities=9% Similarity=-0.072 Sum_probs=37.9
Q ss_pred CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhccc-ceeeeecc
Q 005374 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELG 194 (699)
Q Consensus 152 ~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~-~va~Vdc~ 194 (699)
.++++||.||++||+.|..-.|.+.++.+++++.. .|..|+|+
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~ 71 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN 71 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence 35899999999999999999999999999998764 78888874
No 206
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.15 E-value=0.00025 Score=66.58 Aligned_cols=73 Identities=12% Similarity=0.087 Sum_probs=44.5
Q ss_pred CCcccc----cCCCcEEEEEeccCCCCCCCcchH-H--HHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccc
Q 005374 145 DFPSIF----HDSKPWLIQVYSDGSYLCGQFSGA-W--KTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL 217 (699)
Q Consensus 145 nF~~~v----~~~~~~lV~FYapwC~hCk~l~p~-~--~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gy 217 (699)
+|++.+ .++++++|.||++||++|+.+... | .++++.++....+..++.+. ...++.. . ..++
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~--td~~~~~-~-------g~~v 80 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHET--TDKNLSP-D-------GQYV 80 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEecc--CCCCcCc-c-------Cccc
Confidence 566655 479999999999999999999875 3 23444453322222344331 1111111 1 2489
Q ss_pred cEEEEcCCCC
Q 005374 218 PSLVAFPPGC 227 (699)
Q Consensus 218 PTl~~f~~g~ 227 (699)
||++++.+..
T Consensus 81 PtivFld~~g 90 (130)
T cd02960 81 PRIMFVDPSL 90 (130)
T ss_pred CeEEEECCCC
Confidence 9999996543
No 207
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.14 E-value=0.0035 Score=57.28 Aligned_cols=92 Identities=12% Similarity=0.157 Sum_probs=63.5
Q ss_pred eEEEEEeccCChhHHHHHHHHHHHHHhhccCcccccccccccchhHHHhcCCCeEEEEEEeCcchHHHHHHhcccccccc
Q 005374 406 WYCVILAGRLSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRLTFAWLDGEAQDRYCSFYLFSETSFE 485 (699)
Q Consensus 406 ~lCvI~~~~~~~~~~~~~~~lr~~a~~l~~~~~~~~~~~~~~~~~~a~~~k~~~l~F~wvd~~~q~~f~~~fl~~~~~~~ 485 (699)
++.++++ +.++.+++++.++++|+.|. .|+++ +.|+|+|++.....+++|-.++
T Consensus 18 ~~~~l~f--~~~~~~~~~~~~~~vAk~~~-------------------~~kgk-i~Fv~~d~~~~~~~~~~fgl~~---- 71 (111)
T cd03072 18 PFLILFH--DKDDLESLKEFKQAVARQLI-------------------SEKGA-INFLTADGDKFRHPLLHLGKTP---- 71 (111)
T ss_pred CeEEEEe--cchHHHHHHHHHHHHHHHHH-------------------hcCce-EEEEEEechHhhhHHHHcCCCH----
Confidence 4555555 55678899999999999322 38977 9999999997777888773322
Q ss_pred ccCCcCCCCCCCeEEEEEeecCCccccceeeccccccccccccccCCccccchhccCCCCChHHHHHHHHHHhc
Q 005374 486 TCGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQLVVRYNGSDEIPQIAKWVSEIIQ 559 (699)
Q Consensus 486 ~c~~~~~~~~~p~lvI~~~rr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ 559 (699)
.+.|.++|. +...- .||. + + . +.-+.+.|+.|+++++.
T Consensus 72 --------~~~P~i~i~----~~~~~-~Ky~---~--~---~---------------~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 72 --------ADLPVIAID----SFRHM-YLFP---D--F---E---------------DVYVPGKLKQFVLDLHS 109 (111)
T ss_pred --------hHCCEEEEE----cchhc-CcCC---C--C---c---------------cccCHHHHHHHHHHHhc
Confidence 234888887 43321 3665 2 1 1 22256899999999997
No 208
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=97.11 E-value=0.0019 Score=57.78 Aligned_cols=79 Identities=13% Similarity=0.183 Sum_probs=58.2
Q ss_pred CcEEEEEE-cC---CCCCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCCCceeecCCCCh
Q 005374 278 HKVKVIFF-SK---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN 353 (699)
Q Consensus 278 ~~v~vl~f-~~---~~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~~~~ 353 (699)
+++.+|.| .. .|....|.+..+|..+.+ +.|+.|.... ....++++|+|.++||+++|+++ ....|.|..+.
T Consensus 18 g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~-~~~~l~~~~~V~~~PT~~lf~~g--~~~~~~G~~~~ 93 (100)
T cd02999 18 EDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESS-IKPSLLSRYGVVGFPTILLFNST--PRVRYNGTRTL 93 (100)
T ss_pred CCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCC-CCHHHHHhcCCeecCEEEEEcCC--ceeEecCCCCH
Confidence 45555544 33 344567888888888864 6677664321 34789999999999999999876 55678999999
Q ss_pred hHHHHHH
Q 005374 354 SRLSEVM 360 (699)
Q Consensus 354 ~~L~~fi 360 (699)
+.|.+||
T Consensus 94 ~~l~~f~ 100 (100)
T cd02999 94 DSLAAFY 100 (100)
T ss_pred HHHHhhC
Confidence 9998885
No 209
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.08 E-value=0.0021 Score=56.69 Aligned_cols=78 Identities=18% Similarity=0.253 Sum_probs=55.9
Q ss_pred EEEEEEcC---CCCCchHHHHHHHHhccC--CceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCC-CCceeecCCCCh
Q 005374 280 VKVIFFSK---TGERASPFVRQISRNYWA--YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG-VKPVVYYGSFNN 353 (699)
Q Consensus 280 v~vl~f~~---~~~~~~~~~~~~A~~~~~--~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~-~~pv~y~g~~~~ 353 (699)
+.|.|+.+ .|....+.+..++..+.+ .+.|+.+.. +..+++..+++.++|++++|+++. ..+..|.|..+.
T Consensus 21 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~---~~~~~~~~~~~~~~Pt~~~~~~~~~~~~~~~~g~~~~ 97 (104)
T cd02995 21 VLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDA---TANDVPSEFVVDGFPTILFFPAGDKSNPIKYEGDRTL 97 (104)
T ss_pred EEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeC---cchhhhhhccCCCCCEEEEEcCCCcCCceEccCCcCH
Confidence 33445543 234456777888887766 466776653 234688899999999999999876 346668999999
Q ss_pred hHHHHHH
Q 005374 354 SRLSEVM 360 (699)
Q Consensus 354 ~~L~~fi 360 (699)
..|.+||
T Consensus 98 ~~l~~fi 104 (104)
T cd02995 98 EDLIKFI 104 (104)
T ss_pred HHHHhhC
Confidence 9888885
No 210
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=97.08 E-value=0.0028 Score=60.88 Aligned_cols=42 Identities=14% Similarity=-0.063 Sum_probs=37.0
Q ss_pred CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcc-cceeeeec
Q 005374 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVEL 193 (699)
Q Consensus 152 ~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~-~~va~Vdc 193 (699)
.+++++|.|+|+||+.|++-.|.+.++.++++.. +.|..|+|
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 4678999999999999999999999999999764 37888887
No 211
>PLN02309 5'-adenylylsulfate reductase
Probab=97.04 E-value=0.0022 Score=72.43 Aligned_cols=99 Identities=9% Similarity=0.155 Sum_probs=69.0
Q ss_pred cccchhhhhhhhhcCCCcEEEE-EEcC---CCCCchHHHHHHHHhccCC-ceEEEEEccccccHhHHh-hcCCCCCCEEE
Q 005374 262 YTKESMGKNFLAKTGPHKVKVI-FFSK---TGERASPFVRQISRNYWAY-ASFAFVLWREEESSIWWN-TFEVESAPAIV 335 (699)
Q Consensus 262 it~~~~~~~Fl~~~~~~~v~vl-~f~~---~~~~~~~~~~~~A~~~~~~-~~Fg~V~~~~~~s~~l~~-kf~V~~~PtIv 335 (699)
++.++ +++.+.....+++.+| |+.+ .|....+.+..+|..|.+. +.|+.|.... ....+++ +|+|.++|||+
T Consensus 350 Lt~~n-fe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~-~~~~la~~~~~I~~~PTil 427 (457)
T PLN02309 350 LSRAG-IENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADG-DQKEFAKQELQLGSFPTIL 427 (457)
T ss_pred CCHHH-HHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCC-cchHHHHhhCCCceeeEEE
Confidence 45444 5555542223444454 4433 3445677888888888654 8888887541 2356775 69999999999
Q ss_pred EEcCCCCCceeecC-CCChhHHHHHHHH
Q 005374 336 FLKDPGVKPVVYYG-SFNNSRLSEVMEQ 362 (699)
Q Consensus 336 lfk~~~~~pv~y~g-~~~~~~L~~fi~~ 362 (699)
+|+++...++.|.| ..+.+.|..||+.
T Consensus 428 ~f~~g~~~~v~Y~~~~R~~~~L~~fv~~ 455 (457)
T PLN02309 428 LFPKNSSRPIKYPSEKRDVDSLLSFVNS 455 (457)
T ss_pred EEeCCCCCeeecCCCCcCHHHHHHHHHH
Confidence 99998878888975 6899999999975
No 212
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=97.04 E-value=0.0033 Score=55.61 Aligned_cols=79 Identities=18% Similarity=0.104 Sum_probs=58.1
Q ss_pred EEEEEEcC---CCCCchHHHHHHHHhccC-CceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCCCceeecCCCChhH
Q 005374 280 VKVIFFSK---TGERASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSR 355 (699)
Q Consensus 280 v~vl~f~~---~~~~~~~~~~~~A~~~~~-~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~~~~~~ 355 (699)
+.|.|+.+ .|....|.+..++..+.. .+.|+.|.... ...++++|+|.++||+++|+++. ...|.|..+.+.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~--~~~~~~~~~i~~~Pt~~~~~~g~--~~~~~G~~~~~~ 94 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ--EPGLSGRFFVTALPTIYHAKDGV--FRRYQGPRDKED 94 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC--CHhHHHHcCCcccCEEEEeCCCC--EEEecCCCCHHH
Confidence 55555544 234457777778776654 47788876432 46799999999999999998753 356899999999
Q ss_pred HHHHHHH
Q 005374 356 LSEVMEQ 362 (699)
Q Consensus 356 L~~fi~~ 362 (699)
|.+|+++
T Consensus 95 l~~~i~~ 101 (101)
T cd02994 95 LISFIEE 101 (101)
T ss_pred HHHHHhC
Confidence 9999863
No 213
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.03 E-value=0.014 Score=68.16 Aligned_cols=184 Identities=15% Similarity=0.100 Sum_probs=111.2
Q ss_pred CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEEEcC-CCCCCC
Q 005374 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFP-PGCKSS 230 (699)
Q Consensus 152 ~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~f~-~g~~~~ 230 (699)
.+.+.|+.|+.+.|..|..+....++++ .|.+.+.+-..|..++.. ++++|+ |...|++.++. +|..
T Consensus 365 ~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~i~~~~~~~~~~~~---~~~~~~------v~~~P~~~i~~~~~~~-- 432 (555)
T TIGR03143 365 ENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSEKLNSEAVNRGEEPE---SETLPK------ITKLPTVALLDDDGNY-- 432 (555)
T ss_pred CCCEEEEEEECCCchhhHHHHHHHHHHH-hcCCcEEEEEeccccchh---hHhhcC------CCcCCEEEEEeCCCcc--
Confidence 4566788899999999988888888887 455666777777764433 888888 66999999995 4432
Q ss_pred CccccccCCcCHHHHHHHHHHHhc-cCCcceecccchhhhhhhhhcCCCcEEEE-EEcCCCC-Cch--HHHHHHHHhccC
Q 005374 231 DCMTRFEGELSVDAVTDWFATAIL-KLPRIFYYTKESMGKNFLAKTGPHKVKVI-FFSKTGE-RAS--PFVRQISRNYWA 305 (699)
Q Consensus 231 ~~~~~Y~G~rs~~~Iv~fi~k~v~-~lP~~~~it~~~~~~~Fl~~~~~~~v~vl-~f~~~~~-~~~--~~~~~~A~~~~~ 305 (699)
....|.|--.=..+-.|+...+. +.+... + +++ ..+.+.... ..+.+- |++..|. |+. ..+..+|... .
T Consensus 433 -~~i~f~g~P~G~Ef~s~i~~i~~~~~~~~~-l-~~~-~~~~i~~~~-~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~-~ 506 (555)
T TIGR03143 433 -TGLKFHGVPSGHELNSFILALYNAAGPGQP-L-GEE-LLEKIKKIT-KPVNIKIGVSLSCTLCPDVVLAAQRIASLN-P 506 (555)
T ss_pred -cceEEEecCccHhHHHHHHHHHHhcCCCCC-C-CHH-HHHHHHhcC-CCeEEEEEECCCCCCcHHHHHHHHHHHHhC-C
Confidence 34778776555555555544321 122221 2 222 223333321 223332 3454443 322 2233355432 2
Q ss_pred CceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCCCceeecCCCChhHHHHHH
Q 005374 306 YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM 360 (699)
Q Consensus 306 ~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~~~~~~L~~fi 360 (699)
.+..-.+.. .+.++++++|+|-+.|++++ +++ +.+.|..+.+.+.+|+
T Consensus 507 ~i~~~~i~~--~~~~~~~~~~~v~~vP~~~i---~~~--~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 507 NVEAEMIDV--SHFPDLKDEYGIMSVPAIVV---DDQ--QVYFGKKTIEEMLELI 554 (555)
T ss_pred CceEEEEEC--cccHHHHHhCCceecCEEEE---CCE--EEEeeCCCHHHHHHhh
Confidence 455444432 23478999999999999988 332 4567888888887775
No 214
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0011 Score=58.97 Aligned_cols=49 Identities=24% Similarity=0.206 Sum_probs=43.1
Q ss_pred cccCcCCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCCh
Q 005374 41 DALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDP 90 (699)
Q Consensus 41 ~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~I~~Ay~vL~d~ 90 (699)
.||||++.++.+.||+|+|++....|||+. ++.-.-.+||+|+++|...
T Consensus 60 lIL~v~~s~~k~KikeaHrriM~~NHPD~G-GSPYlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 60 LILGVTPSLDKDKIKEAHRRIMLANHPDRG-GSPYLASKINEAKDLLEGT 108 (112)
T ss_pred HHhCCCccccHHHHHHHHHHHHHcCCCcCC-CCHHHHHHHHHHHHHHhcc
Confidence 399999999999999999999999999986 5555567899999999753
No 215
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.02 E-value=0.00054 Score=57.21 Aligned_cols=58 Identities=14% Similarity=0.176 Sum_probs=38.5
Q ss_pred EEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHh--CCCCcccccccccEEEEcCCCC
Q 005374 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAER--KPIGQIFFRRGLPSLVAFPPGC 227 (699)
Q Consensus 157 lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k--~~i~~~f~V~gyPTl~~f~~g~ 227 (699)
++.|+++||++|+++.+.+++..- .+-.||.+++........+ ++ +.++|+| ++.+|.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~------~~~~idi~~~~~~~~~~~~~~~~------~~~vP~i-~~~~g~ 61 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGA------AYEWVDIEEDEGAADRVVSVNNG------NMTVPTV-KFADGS 61 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCC------ceEEEeCcCCHhHHHHHHHHhCC------CceeCEE-EECCCe
Confidence 578999999999999888766532 3456787755442222222 24 6699998 466663
No 216
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.02 E-value=0.0023 Score=56.35 Aligned_cols=87 Identities=22% Similarity=0.282 Sum_probs=60.0
Q ss_pred hhhhhhhcCCCcEEEEEEcC---CCCCchHHHHHHHHhccC---CceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCC
Q 005374 268 GKNFLAKTGPHKVKVIFFSK---TGERASPFVRQISRNYWA---YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG 341 (699)
Q Consensus 268 ~~~Fl~~~~~~~v~vl~f~~---~~~~~~~~~~~~A~~~~~---~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~ 341 (699)
++..+.. ..+.+.|+.+ .|....+.+..++.++.+ .+.|+.|.... ...++++|+|.++|++++|+++
T Consensus 10 f~~~~~~---~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~~g- 83 (102)
T cd03005 10 FDHHIAE---GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ--HRELCSEFQVRGYPTLLLFKDG- 83 (102)
T ss_pred HHHHhhc---CCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC--ChhhHhhcCCCcCCEEEEEeCC-
Confidence 4555532 2344445443 233456778888888876 57777775332 3679999999999999999764
Q ss_pred CCceeecCCCChhHHHHHH
Q 005374 342 VKPVVYYGSFNNSRLSEVM 360 (699)
Q Consensus 342 ~~pv~y~g~~~~~~L~~fi 360 (699)
.....|.|..+.+.|.+||
T Consensus 84 ~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 84 EKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred CeeeEeeCCCCHHHHHhhC
Confidence 3445689999988888875
No 217
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=96.99 E-value=0.0026 Score=55.03 Aligned_cols=79 Identities=19% Similarity=0.230 Sum_probs=56.7
Q ss_pred EEEEEEcCC---CCCchHHHHHHHHhc--cCCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCCCceeecCCCChh
Q 005374 280 VKVIFFSKT---GERASPFVRQISRNY--WAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNS 354 (699)
Q Consensus 280 v~vl~f~~~---~~~~~~~~~~~A~~~--~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~~~~~ 354 (699)
+.+.|+.+. |....+.+..++..+ .+.+.|+.+.... ...++++|+|.+.|++++|++++.....|.|..+.+
T Consensus 18 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~g~~~~~ 95 (101)
T cd02961 18 VLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA--NNDLCSEYGVRGYPTIKLFPNGSKEPVKYEGPRTLE 95 (101)
T ss_pred EEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc--hHHHHHhCCCCCCCEEEEEcCCCcccccCCCCcCHH
Confidence 444444442 233456677777777 5778888875432 468999999999999999998755666688888888
Q ss_pred HHHHHH
Q 005374 355 RLSEVM 360 (699)
Q Consensus 355 ~L~~fi 360 (699)
.|.+|+
T Consensus 96 ~i~~~~ 101 (101)
T cd02961 96 SLVEFI 101 (101)
T ss_pred HHHhhC
Confidence 887774
No 218
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=96.99 E-value=0.002 Score=61.86 Aligned_cols=42 Identities=7% Similarity=-0.154 Sum_probs=35.8
Q ss_pred CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcc-cceeeeecc
Q 005374 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG 194 (699)
Q Consensus 152 ~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~-~~va~Vdc~ 194 (699)
.+++++|.|+|.||+ |..-.|.++++.+++++. +.|..|+++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 468999999999999 999999999999999754 367777764
No 219
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=96.99 E-value=0.0029 Score=55.81 Aligned_cols=90 Identities=18% Similarity=0.241 Sum_probs=59.8
Q ss_pred hhhhhhhcCCCcEEEEEEcCC---CCCchHHHHHHHHhcc--CCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCC
Q 005374 268 GKNFLAKTGPHKVKVIFFSKT---GERASPFVRQISRNYW--AYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGV 342 (699)
Q Consensus 268 ~~~Fl~~~~~~~v~vl~f~~~---~~~~~~~~~~~A~~~~--~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~ 342 (699)
++..+... ..+.|.|+.+- |....+.+..++..+. ..+.|+.+.....+...++++|+|.++|++++|+++ +
T Consensus 10 ~~~~~~~~--~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~g-~ 86 (104)
T cd02997 10 FRKFLKKE--KHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENG-K 86 (104)
T ss_pred HHHHHhhC--CCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEeCC-C
Confidence 55555432 23434444432 2334566666777665 456677776554335789999999999999999865 3
Q ss_pred CceeecCCCChhHHHHHH
Q 005374 343 KPVVYYGSFNNSRLSEVM 360 (699)
Q Consensus 343 ~pv~y~g~~~~~~L~~fi 360 (699)
....+.|..+.+.|.+|+
T Consensus 87 ~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 87 FVEKYEGERTAEDIIEFM 104 (104)
T ss_pred eeEEeCCCCCHHHHHhhC
Confidence 455688988888888874
No 220
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=96.95 E-value=0.0048 Score=53.81 Aligned_cols=91 Identities=13% Similarity=0.235 Sum_probs=61.7
Q ss_pred hhhhhhhcCCCcEEEEE-EcCCC---CCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCCC
Q 005374 268 GKNFLAKTGPHKVKVIF-FSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVK 343 (699)
Q Consensus 268 ~~~Fl~~~~~~~v~vl~-f~~~~---~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~~ 343 (699)
+.+++... .++.+++ +.+.+ ....+.+..++..+.+.+.|+.+.... ...++++|+|...|++++|+++. .
T Consensus 6 ~~~~~~~~--~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~P~~~~~~~g~-~ 80 (101)
T TIGR01068 6 FDETIASS--DKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDE--NPDIAAKYGIRSIPTLLLFKNGK-E 80 (101)
T ss_pred HHHHHhhc--CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCC--CHHHHHHcCCCcCCEEEEEeCCc-E
Confidence 44444432 3344544 44322 334566777887887788999887543 46799999999999999997543 2
Q ss_pred ceeecCCCChhHHHHHHHHh
Q 005374 344 PVVYYGSFNNSRLSEVMEQN 363 (699)
Q Consensus 344 pv~y~g~~~~~~L~~fi~~~ 363 (699)
...+.|..+.+.|.+|++++
T Consensus 81 ~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 81 VDRSVGALPKAALKQLINKN 100 (101)
T ss_pred eeeecCCCCHHHHHHHHHhh
Confidence 23457878888999998764
No 221
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=96.94 E-value=0.0031 Score=57.31 Aligned_cols=82 Identities=16% Similarity=0.112 Sum_probs=58.8
Q ss_pred CcEEEEEE-cC---CCCCchHHHHHHHHhccC-CceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCCCceeecCCCC
Q 005374 278 HKVKVIFF-SK---TGERASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN 352 (699)
Q Consensus 278 ~~v~vl~f-~~---~~~~~~~~~~~~A~~~~~-~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~~~ 352 (699)
+++.+|.| .+ .|....|.+..++..+.+ .+.|+.|.... ...++++|+|.++||+++|+++ .....+.|..+
T Consensus 24 ~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~--~~~l~~~~~V~~~Pt~~i~~~g-~~~~~~~G~~~ 100 (111)
T cd02963 24 KKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH--ERRLARKLGAHSVPAIVGIING-QVTFYHDSSFT 100 (111)
T ss_pred CCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc--cHHHHHHcCCccCCEEEEEECC-EEEEEecCCCC
Confidence 44555554 33 334456778888888865 47788886432 4679999999999999999854 33333578888
Q ss_pred hhHHHHHHHH
Q 005374 353 NSRLSEVMEQ 362 (699)
Q Consensus 353 ~~~L~~fi~~ 362 (699)
.+.|..||.+
T Consensus 101 ~~~l~~~i~~ 110 (111)
T cd02963 101 KQHVVDFVRK 110 (111)
T ss_pred HHHHHHHHhc
Confidence 8999999864
No 222
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=96.90 E-value=0.0033 Score=56.04 Aligned_cols=63 Identities=13% Similarity=0.227 Sum_probs=47.7
Q ss_pred HHHHhccCCceEEEEEccccc--cHhHHhhcCCCCCCEEEEEcC-CCCCceeecCCCChhHHHHHH
Q 005374 298 QISRNYWAYASFAFVLWREEE--SSIWWNTFEVESAPAIVFLKD-PGVKPVVYYGSFNNSRLSEVM 360 (699)
Q Consensus 298 ~~A~~~~~~~~Fg~V~~~~~~--s~~l~~kf~V~~~PtIvlfk~-~~~~pv~y~g~~~~~~L~~fi 360 (699)
.++..+.+.+.++.+.+.... ...++++|+|.+.|++++|+. +++.+..+.|.++.+.|.++|
T Consensus 38 ~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 38 EVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGPGGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred HHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECCCCCCCCcccccccCHHHHHHHh
Confidence 355566667778887754322 367999999999999999986 566666678988998888876
No 223
>PF13728 TraF: F plasmid transfer operon protein
Probab=96.82 E-value=0.0021 Score=65.64 Aligned_cols=86 Identities=22% Similarity=0.192 Sum_probs=62.7
Q ss_pred CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccch--------hhhhHHHHhCCCCcccccccccEEEEc
Q 005374 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI--------RLATHLAERKPIGQIFFRRGLPSLVAF 223 (699)
Q Consensus 152 ~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~--------~~~~~L~~k~~i~~~f~V~gyPTl~~f 223 (699)
.++.-||.||.+.|++|+.++|+...+++++. +.|-.|+.+.. .....++++++ |..+|+++++
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~------v~~~Pal~Lv 190 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLG------VKVTPALFLV 190 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcC------CCcCCEEEEE
Confidence 56778999999999999999999999999983 34555555421 11233778887 6799999998
Q ss_pred CCCCCCCCccccccCCcCHHHHHH
Q 005374 224 PPGCKSSDCMTRFEGELSVDAVTD 247 (699)
Q Consensus 224 ~~g~~~~~~~~~Y~G~rs~~~Iv~ 247 (699)
..+... ....-.|..+.+.|.+
T Consensus 191 ~~~~~~--~~pv~~G~~s~~~L~~ 212 (215)
T PF13728_consen 191 NPNTKK--WYPVSQGFMSLDELED 212 (215)
T ss_pred ECCCCe--EEEEeeecCCHHHHHH
Confidence 776422 1222368888888875
No 224
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.0038 Score=59.60 Aligned_cols=82 Identities=15% Similarity=0.220 Sum_probs=63.0
Q ss_pred cEEEEEEc---CCCCCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCCCceeecCCCChhH
Q 005374 279 KVKVIFFS---KTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSR 355 (699)
Q Consensus 279 ~v~vl~f~---~~~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~~~~~~ 355 (699)
.|.|-|.. ..|+...|.+..++.+|.+.+.|+.|.+.+ ..+++.+|+|...||+++|+++++. ..+.|..+.+.
T Consensus 63 PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~--~~ela~~Y~I~avPtvlvfknGe~~-d~~vG~~~~~~ 139 (150)
T KOG0910|consen 63 PVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDE--HPELAEDYEISAVPTVLVFKNGEKV-DRFVGAVPKEQ 139 (150)
T ss_pred CEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcccc--ccchHhhcceeeeeEEEEEECCEEe-eeecccCCHHH
Confidence 34444553 234557899999999999999999997543 5789999999999999999986543 34577788888
Q ss_pred HHHHHHHh
Q 005374 356 LSEVMEQN 363 (699)
Q Consensus 356 L~~fi~~~ 363 (699)
|..+|+..
T Consensus 140 l~~~i~k~ 147 (150)
T KOG0910|consen 140 LRSLIKKF 147 (150)
T ss_pred HHHHHHHH
Confidence 88888753
No 225
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.81 E-value=0.0011 Score=58.68 Aligned_cols=101 Identities=13% Similarity=0.222 Sum_probs=74.2
Q ss_pred CCCCcccccCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCccccccccc-EEE
Q 005374 143 SEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLP-SLV 221 (699)
Q Consensus 143 ~~nF~~~v~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyP-Tl~ 221 (699)
...|..++....-+||.|..+--..-..+ ..+.++|..++|.+.++-|||.+. ....||+++.+.-.+. .-| +|+
T Consensus 9 ~KdfKKLLRTr~NVLvLy~ks~k~a~~~L-k~~~~~A~~vkG~gT~~~vdCgd~-e~kKLCKKlKv~~~~k--p~~~~Lk 84 (112)
T cd03067 9 HKDFKKLLRTRNNVLVLYSKSAKSAEALL-KLLSDVAQAVKGQGTIAWIDCGDS-ESRKLCKKLKVDPSSK--PKPVELK 84 (112)
T ss_pred hHHHHHHHhhcCcEEEEEecchhhHHHHH-HHHHHHHHHhcCceeEEEEecCCh-HHHHHHHHHccCCCCC--CCcchhh
Confidence 45688888777788888877654434343 489999999999999999999942 3455999987430000 222 367
Q ss_pred EcCCCCCCCCccccccCCcCHHHHHHHHHH
Q 005374 222 AFPPGCKSSDCMTRFEGELSVDAVTDWFAT 251 (699)
Q Consensus 222 ~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k 251 (699)
-|.+|.- ..+|+-..+..+|+.|+++
T Consensus 85 HYKdG~f----HkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 85 HYKDGDF----HTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred cccCCCc----cccccchhhHHHHHHHhhC
Confidence 7888864 3789999999999999974
No 226
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=96.79 E-value=0.0014 Score=62.14 Aligned_cols=55 Identities=9% Similarity=0.068 Sum_probs=41.3
Q ss_pred CCCcEEEEEecc-CCCCCCCcchHHHHHHHHhhcc-cceeeeeccchhhhhHHHHhC
Q 005374 152 DSKPWLIQVYSD-GSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERK 206 (699)
Q Consensus 152 ~~~~~lV~FYap-wC~hCk~l~p~~~~~A~~L~g~-~~va~Vdc~~~~~~~~L~~k~ 206 (699)
.+++.+|.||+. ||+.|..-.|...++++.++.. +.+..|..+.+......++++
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~ 83 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKY 83 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHT
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhh
Confidence 578899999999 9999999999999998887654 466666665443344444443
No 227
>PRK09381 trxA thioredoxin; Provisional
Probab=96.78 E-value=0.0076 Score=54.13 Aligned_cols=82 Identities=13% Similarity=0.280 Sum_probs=60.1
Q ss_pred cEEEE-EEcCC---CCCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCCCceeecCCCChh
Q 005374 279 KVKVI-FFSKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNS 354 (699)
Q Consensus 279 ~v~vl-~f~~~---~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~~~~~ 354 (699)
++.++ |+.+. |....+.+..++..+.+.+.|+.+.... ...++++|+|...|++++|+++ .....+.|..+.+
T Consensus 22 ~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~~~~ 98 (109)
T PRK09381 22 GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ--NPGTAPKYGIRGIPTLLLFKNG-EVAATKVGALSKG 98 (109)
T ss_pred CeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCC--ChhHHHhCCCCcCCEEEEEeCC-eEEEEecCCCCHH
Confidence 34455 44432 3345678888999998888888887543 4678999999999999999754 3333467888888
Q ss_pred HHHHHHHHh
Q 005374 355 RLSEVMEQN 363 (699)
Q Consensus 355 ~L~~fi~~~ 363 (699)
.|..||..+
T Consensus 99 ~l~~~i~~~ 107 (109)
T PRK09381 99 QLKEFLDAN 107 (109)
T ss_pred HHHHHHHHh
Confidence 999998764
No 228
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=96.77 E-value=0.0059 Score=58.25 Aligned_cols=87 Identities=16% Similarity=0.215 Sum_probs=61.6
Q ss_pred CcEEEEEE-cC---CCCCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCCCceeecCCCCh
Q 005374 278 HKVKVIFF-SK---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN 353 (699)
Q Consensus 278 ~~v~vl~f-~~---~~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~~~~ 353 (699)
+++.||.| .. .|....+.+..++..|.+.+.|..|.+.......++.+|+|.++|++++|..+++....+.|..+.
T Consensus 20 gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~~~~ 99 (142)
T cd02950 20 GKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEGQSIGLQPK 99 (142)
T ss_pred CCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCH
Confidence 45666655 33 233456777778888877788888876543335789999999999999996555433345788888
Q ss_pred hHHHHHHHHhh
Q 005374 354 SRLSEVMEQNK 364 (699)
Q Consensus 354 ~~L~~fi~~~~ 364 (699)
+.|.++|....
T Consensus 100 ~~l~~~l~~l~ 110 (142)
T cd02950 100 QVLAQNLDALV 110 (142)
T ss_pred HHHHHHHHHHH
Confidence 88888887643
No 229
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=96.77 E-value=0.0094 Score=56.09 Aligned_cols=87 Identities=11% Similarity=0.166 Sum_probs=63.1
Q ss_pred CcEEEEEEcCC----C----CCchHHHHHHHHhccCC-ceEEEEEccccccHhHHhhcCCCC--CCEEEEEcCCCCCcee
Q 005374 278 HKVKVIFFSKT----G----ERASPFVRQISRNYWAY-ASFAFVLWREEESSIWWNTFEVES--APAIVFLKDPGVKPVV 346 (699)
Q Consensus 278 ~~v~vl~f~~~----~----~~~~~~~~~~A~~~~~~-~~Fg~V~~~~~~s~~l~~kf~V~~--~PtIvlfk~~~~~pv~ 346 (699)
+.+++|.|-++ . +.....++.+|.+|+++ +.|+++.... ...+.+.|||.. +|+++++...+.+...
T Consensus 20 ~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~--~~~~~~~fgl~~~~~P~v~i~~~~~~KY~~ 97 (130)
T cd02983 20 KQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGA--QLDLEEALNIGGFGYPAMVAINFRKMKFAT 97 (130)
T ss_pred CCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcc--cHHHHHHcCCCccCCCEEEEEecccCcccc
Confidence 56888877532 1 11234556699999999 8999887544 345999999964 8999999875434333
Q ss_pred ecCCCChhHHHHHHHHhhcc
Q 005374 347 YYGSFNNSRLSEVMEQNKLQ 366 (699)
Q Consensus 347 y~g~~~~~~L~~fi~~~~~~ 366 (699)
+.|+++.+.|.+|++...-.
T Consensus 98 ~~~~~t~e~i~~Fv~~~l~G 117 (130)
T cd02983 98 LKGSFSEDGINEFLRELSYG 117 (130)
T ss_pred ccCccCHHHHHHHHHHHHcC
Confidence 67999999999999875443
No 230
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=96.75 E-value=0.0011 Score=69.77 Aligned_cols=112 Identities=15% Similarity=0.231 Sum_probs=71.2
Q ss_pred ceEEEecC-CCCccccc---CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcc
Q 005374 136 HAFNVVTS-EDFPSIFH---DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQI 211 (699)
Q Consensus 136 ~~V~~Lt~-~nF~~~v~---~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~ 211 (699)
..|.+|+. +.|-..|. ....++|.||.|.+..|..+...+..+|..+.. ++|.+|... .. .++.+|+
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-vKFvkI~a~---~~-~~~~~f~---- 195 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE-VKFVKIRAS---KC-PASENFP---- 195 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-SEEEEEEEC---GC-CTTTTS-----
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEEehh---cc-CcccCCc----
Confidence 35788865 67877874 345688999999999999999999999998854 589888877 21 1556676
Q ss_pred cccccccEEEEcCCCCCCC--Cccccc-cCCcCHHHHHHHHHHHhccCCcc
Q 005374 212 FFRRGLPSLVAFPPGCKSS--DCMTRF-EGELSVDAVTDWFATAILKLPRI 259 (699)
Q Consensus 212 f~V~gyPTl~~f~~g~~~~--~~~~~Y-~G~rs~~~Iv~fi~k~v~~lP~~ 259 (699)
++.+|||++|++|.... ....+. ....+..+|-.|+.++ ..+|..
T Consensus 196 --~~~LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~-G~l~~k 243 (265)
T PF02114_consen 196 --DKNLPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY-GVLPEK 243 (265)
T ss_dssp --TTC-SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT-TSSS--
T ss_pred --ccCCCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc-CCCCCc
Confidence 67999999999985420 011122 2256777887877765 334543
No 231
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=96.70 E-value=0.0061 Score=59.54 Aligned_cols=96 Identities=10% Similarity=0.104 Sum_probs=63.0
Q ss_pred CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcc-cceeeeeccch--------hhhhHHHHhCCC------------Cc
Q 005374 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDI--------RLATHLAERKPI------------GQ 210 (699)
Q Consensus 152 ~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~-~~va~Vdc~~~--------~~~~~L~~k~~i------------~~ 210 (699)
.++++||.||++||+.|....+...++..+++.. +.|..|.++.. .......+++++ .+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 5688999999999999999999999999999743 47777776531 111112222221 12
Q ss_pred ccccccccEEEEcCCCCCCCCcccccc-----------CCcCHHHHHHHHHHH
Q 005374 211 IFFRRGLPSLVAFPPGCKSSDCMTRFE-----------GELSVDAVTDWFATA 252 (699)
Q Consensus 211 ~f~V~gyPTl~~f~~g~~~~~~~~~Y~-----------G~rs~~~Iv~fi~k~ 252 (699)
.|.|.+.|+++++.++.+. .|. +..+.+.+.+-+...
T Consensus 104 ~~~v~~~P~~~lid~~G~v-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 151 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKL-----VYRGRIDDSRPGNDPPVTGRDLRAALDAL 151 (171)
T ss_pred HcCCCcCCcEEEECCCCeE-----EEeecccCCcccccccccHHHHHHHHHHH
Confidence 3447799999888644332 222 234567777777665
No 232
>PRK10996 thioredoxin 2; Provisional
Probab=96.67 E-value=0.0074 Score=57.28 Aligned_cols=83 Identities=16% Similarity=0.192 Sum_probs=59.3
Q ss_pred CcEEEEEE-cCCC---CCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCCCceeecCCCCh
Q 005374 278 HKVKVIFF-SKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN 353 (699)
Q Consensus 278 ~~v~vl~f-~~~~---~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~~~~ 353 (699)
+++.+|.| .+.+ ....+.+..++.++.+.+.|+.|.... ...++++|+|.+.|++++|++ ++....+.|..+.
T Consensus 52 ~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~--~~~l~~~~~V~~~Ptlii~~~-G~~v~~~~G~~~~ 128 (139)
T PRK10996 52 DLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEA--ERELSARFRIRSIPTIMIFKN-GQVVDMLNGAVPK 128 (139)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCC--CHHHHHhcCCCccCEEEEEEC-CEEEEEEcCCCCH
Confidence 34556555 3322 224566677888887778888876432 478999999999999999985 4333346888888
Q ss_pred hHHHHHHHHh
Q 005374 354 SRLSEVMEQN 363 (699)
Q Consensus 354 ~~L~~fi~~~ 363 (699)
+.|.+|+++.
T Consensus 129 e~l~~~l~~~ 138 (139)
T PRK10996 129 APFDSWLNEA 138 (139)
T ss_pred HHHHHHHHHh
Confidence 9999999764
No 233
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=96.64 E-value=0.0072 Score=62.15 Aligned_cols=100 Identities=9% Similarity=0.093 Sum_probs=68.1
Q ss_pred cccchhhhhhhhhc---CCCcEEEEEEcCC---CCCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEE
Q 005374 262 YTKESMGKNFLAKT---GPHKVKVIFFSKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIV 335 (699)
Q Consensus 262 it~~~~~~~Fl~~~---~~~~v~vl~f~~~---~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIv 335 (699)
+++.+ +++.+... ....+.|.|+.+- |....|.+..+|.++.+.+.|+.+.... ..+++++|+|.++||++
T Consensus 35 Lt~~n-F~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~--~~~l~~~~~I~~~PTl~ 111 (224)
T PTZ00443 35 LNDKN-FEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATR--ALNLAKRFAIKGYPTLL 111 (224)
T ss_pred CCHHH-HHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcc--cHHHHHHcCCCcCCEEE
Confidence 44443 56655432 1123444455442 3345677888999998888888875432 47899999999999999
Q ss_pred EEcCCCCCceee-cCCCChhHHHHHHHHhhcc
Q 005374 336 FLKDPGVKPVVY-YGSFNNSRLSEVMEQNKLQ 366 (699)
Q Consensus 336 lfk~~~~~pv~y-~g~~~~~~L~~fi~~~~~~ 366 (699)
+|+++. .+.| .|..+.+.|.+|+..+-..
T Consensus 112 ~f~~G~--~v~~~~G~~s~e~L~~fi~~~~~~ 141 (224)
T PTZ00443 112 LFDKGK--MYQYEGGDRSTEKLAAFALGDFKK 141 (224)
T ss_pred EEECCE--EEEeeCCCCCHHHHHHHHHHHHHh
Confidence 999642 3334 6778999999999877533
No 234
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=96.61 E-value=0.012 Score=61.38 Aligned_cols=104 Identities=13% Similarity=0.172 Sum_probs=77.4
Q ss_pred hhhhhhhcCCCcEEEEEE---cCCCCCchHHHHHHHHhccC---CceEEEEEcccccc-HhHHhhcCCCCCCEEEEEcCC
Q 005374 268 GKNFLAKTGPHKVKVIFF---SKTGERASPFVRQISRNYWA---YASFAFVLWREEES-SIWWNTFEVESAPAIVFLKDP 340 (699)
Q Consensus 268 ~~~Fl~~~~~~~v~vl~f---~~~~~~~~~~~~~~A~~~~~---~~~Fg~V~~~~~~s-~~l~~kf~V~~~PtIvlfk~~ 340 (699)
-+.|+....+..|+|-|+ +.+|++..|.|..+...+++ -++.|... +.. +.++++|+|.++|||.+||.+
T Consensus 34 ddkFkdnkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlD---aT~f~aiAnefgiqGYPTIk~~kgd 110 (468)
T KOG4277|consen 34 DDKFKDNKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLD---ATRFPAIANEFGIQGYPTIKFFKGD 110 (468)
T ss_pred hHHhhhcccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccc---cccchhhHhhhccCCCceEEEecCC
Confidence 367777777788888887 45778899999886555443 35566553 333 789999999999999999864
Q ss_pred CCCceeecCCCChhHHHHHHHHhhccccccCCccccccccccchhh
Q 005374 341 GVKPVVYYGSFNNSRLSEVMEQNKLQGLYFCGTCVSELPQLRSVTS 386 (699)
Q Consensus 341 ~~~pv~y~g~~~~~~L~~fi~~~~~~~~~~~~~~~~~vp~Lts~s~ 386 (699)
..+.|-|..++++|..|...-.-+ .+-.+++...
T Consensus 111 --~a~dYRG~R~Kd~iieFAhR~a~a----------iI~pi~enQ~ 144 (468)
T KOG4277|consen 111 --HAIDYRGGREKDAIIEFAHRCAAA----------IIEPINENQI 144 (468)
T ss_pred --eeeecCCCccHHHHHHHHHhcccc----------eeeecChhHH
Confidence 456789999999999998776666 5666666333
No 235
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=96.49 E-value=0.0018 Score=55.01 Aligned_cols=60 Identities=10% Similarity=0.083 Sum_probs=38.6
Q ss_pred EEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhh--hhHHHHhCCCCcccccccccEEEEcCCC
Q 005374 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL--ATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (699)
Q Consensus 157 lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~--~~~L~~k~~i~~~f~V~gyPTl~~f~~g 226 (699)
++.|+++||++|+++.+.++++. +.+...+-.|+-+++.. ...+.+..+ +.++|++. .+|
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g------~~~vP~v~--i~g 62 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITG------QRTVPNIF--ING 62 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhC------CCCCCeEE--ECC
Confidence 47899999999999999988876 33223444444432211 122556566 66999974 455
No 236
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=96.46 E-value=0.016 Score=53.05 Aligned_cols=94 Identities=10% Similarity=0.164 Sum_probs=57.8
Q ss_pred cccchhhhhhhhhcCCCcEEEEEEcC---CCCCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEEc
Q 005374 262 YTKESMGKNFLAKTGPHKVKVIFFSK---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLK 338 (699)
Q Consensus 262 it~~~~~~~Fl~~~~~~~v~vl~f~~---~~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk 338 (699)
+++...+.+.+.. ...+.|.|+.+ .|....+.+..++.+|. .+.|..|.... ..+++++|+|...||+++|+
T Consensus 9 i~~~~~~~~~i~~--~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~-~i~f~~Vd~~~--~~~l~~~~~v~~vPt~l~fk 83 (113)
T cd02989 9 VSDEKEFFEIVKS--SERVVCHFYHPEFFRCKIMDKHLEILAKKHL-ETKFIKVNAEK--APFLVEKLNIKVLPTVILFK 83 (113)
T ss_pred eCCHHHHHHHHhC--CCcEEEEEECCCCccHHHHHHHHHHHHHHcC-CCEEEEEEccc--CHHHHHHCCCccCCEEEEEE
Confidence 4443334554432 23344445543 23345677888888875 47888887443 46899999999999999999
Q ss_pred CCCCCcee-------ecCCCChhHHHHHH
Q 005374 339 DPGVKPVV-------YYGSFNNSRLSEVM 360 (699)
Q Consensus 339 ~~~~~pv~-------y~g~~~~~~L~~fi 360 (699)
++...... ..++++.++++.|+
T Consensus 84 ~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 84 NGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred CCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 76421111 12345666677665
No 237
>PHA02278 thioredoxin-like protein
Probab=96.43 E-value=0.012 Score=53.04 Aligned_cols=81 Identities=14% Similarity=0.112 Sum_probs=55.1
Q ss_pred CcEEEEEE-cC---CCCCchHHHHHHHHhccCCceEEEEEccccc--cHhHHhhcCCCCCCEEEEEcCCCCCceeecCCC
Q 005374 278 HKVKVIFF-SK---TGERASPFVRQISRNYWAYASFAFVLWREEE--SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSF 351 (699)
Q Consensus 278 ~~v~vl~f-~~---~~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~--s~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~~ 351 (699)
+.+.++.| .+ .|....|.+..++.++.....|..+.+.... .++++++|+|.+.||+++|+++. ..-...|..
T Consensus 14 ~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~-~v~~~~G~~ 92 (103)
T PHA02278 14 KKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQ-LVKKYEDQV 92 (103)
T ss_pred CCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCE-EEEEEeCCC
Confidence 34555544 33 3344578888888765555678888765321 25799999999999999999853 322357777
Q ss_pred ChhHHHHH
Q 005374 352 NNSRLSEV 359 (699)
Q Consensus 352 ~~~~L~~f 359 (699)
+.+.|.++
T Consensus 93 ~~~~l~~~ 100 (103)
T PHA02278 93 TPMQLQEL 100 (103)
T ss_pred CHHHHHhh
Confidence 77777665
No 238
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=96.39 E-value=0.0078 Score=55.00 Aligned_cols=104 Identities=13% Similarity=0.043 Sum_probs=77.4
Q ss_pred EEEecCCCCcccccCCCcEEEEEeccCCCCCCCcchHHHHHHHH---hhcccceeeeeccchhhhhHHHHhCCCCccccc
Q 005374 138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAAL---LEGIANTGMVELGDIRLATHLAERKPIGQIFFR 214 (699)
Q Consensus 138 V~~Lt~~nF~~~v~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~---L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V 214 (699)
|.++|.+|+.....+..+..+.||.+ ..-..+.+.+.++|+. ++|.+.+..+|.++... ..+.+|+. =
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~---~~~~fgl~----~ 71 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKGAINFLTADGDKFRH---PLLHLGKT----P 71 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhh---HHHHcCCC----H
Confidence 45688888887777777777788832 2346788899999999 88989999999994433 77888844 2
Q ss_pred ccccEEEEcCCCCCCCCccccccCCcCHHHHHHHHHHH
Q 005374 215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (699)
Q Consensus 215 ~gyPTl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~ 252 (699)
..+|.|.+....... .+..+.+..+.++|.+|+.+.
T Consensus 72 ~~~P~i~i~~~~~~~--Ky~~~~~~~t~~~i~~Fv~~~ 107 (111)
T cd03072 72 ADLPVIAIDSFRHMY--LFPDFEDVYVPGKLKQFVLDL 107 (111)
T ss_pred hHCCEEEEEcchhcC--cCCCCccccCHHHHHHHHHHH
Confidence 239999998764311 122256889999999999887
No 239
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=96.35 E-value=0.022 Score=50.78 Aligned_cols=70 Identities=16% Similarity=0.155 Sum_probs=51.6
Q ss_pred CCCchHHHHHHHHhccC---CceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCCCceeecCCCChhHHHHHHHH
Q 005374 289 GERASPFVRQISRNYWA---YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (699)
Q Consensus 289 ~~~~~~~~~~~A~~~~~---~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~~~~~~L~~fi~~ 362 (699)
|....|.+..++.++++ .+.++.+.... ...++++|+|.+.|++++|+++ ....+.|..+.+.|.+|+++
T Consensus 30 C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~I~~~Pt~~l~~~~--~~~~~~G~~~~~~l~~~~~~ 102 (104)
T cd03000 30 CKKLEPVWNEVGAELKSSGSPVRVGKLDATA--YSSIASEFGVRGYPTIKLLKGD--LAYNYRGPRTKDDIVEFANR 102 (104)
T ss_pred HHhhChHHHHHHHHHHhcCCcEEEEEEECcc--CHhHHhhcCCccccEEEEEcCC--CceeecCCCCHHHHHHHHHh
Confidence 34456778778887743 35566664322 3689999999999999999753 34568898999999999875
No 240
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=96.29 E-value=0.021 Score=50.91 Aligned_cols=92 Identities=13% Similarity=0.186 Sum_probs=58.8
Q ss_pred ccchhhhhhhhhcCCCcEEEEEE-cC---CCCCchHHHHHHHHhccC-CceEEEEEccccccHhHHhhcCCCCCCEEEEE
Q 005374 263 TKESMGKNFLAKTGPHKVKVIFF-SK---TGERASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVESAPAIVFL 337 (699)
Q Consensus 263 t~~~~~~~Fl~~~~~~~v~vl~f-~~---~~~~~~~~~~~~A~~~~~-~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlf 337 (699)
++.+.++.++.. +++.+|.| .+ .|....+.+..++..+.+ .+.|+.+... ..+++++|+|...||+++|
T Consensus 5 ~~~~~~~~~i~~---~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d---~~~~~~~~~v~~~Pt~~~~ 78 (102)
T cd02948 5 NNQEEWEELLSN---KGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD---TIDTLKRYRGKCEPTFLFY 78 (102)
T ss_pred cCHHHHHHHHcc---CCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC---CHHHHHHcCCCcCcEEEEE
Confidence 344445666642 44656655 33 233456777777777764 3567777543 4578999999999999999
Q ss_pred cCCCCCceeecCCCChhHHHHHHHH
Q 005374 338 KDPGVKPVVYYGSFNNSRLSEVMEQ 362 (699)
Q Consensus 338 k~~~~~pv~y~g~~~~~~L~~fi~~ 362 (699)
+++.. .....| .+...|.++|.+
T Consensus 79 ~~g~~-~~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 79 KNGEL-VAVIRG-ANAPLLNKTITE 101 (102)
T ss_pred ECCEE-EEEEec-CChHHHHHHHhh
Confidence 86532 222344 477778887753
No 241
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=96.28 E-value=0.014 Score=53.63 Aligned_cols=62 Identities=19% Similarity=0.265 Sum_probs=48.2
Q ss_pred CcEEEEEEc-C---CCCCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCC
Q 005374 278 HKVKVIFFS-K---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG 341 (699)
Q Consensus 278 ~~v~vl~f~-~---~~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~ 341 (699)
+++.||.|. + .|....|.+..+|.+|.+.+.|+.|.... .++++++|+|.+.||+++||++.
T Consensus 14 ~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~--~~~la~~~~V~~iPTf~~fk~G~ 79 (114)
T cd02954 14 EKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDE--VPDFNKMYELYDPPTVMFFFRNK 79 (114)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCC--CHHHHHHcCCCCCCEEEEEECCE
Confidence 456666553 2 33445788888999998888899987544 57899999999999999999754
No 242
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=96.26 E-value=0.015 Score=51.23 Aligned_cols=81 Identities=15% Similarity=0.212 Sum_probs=56.1
Q ss_pred CcEEEEEEc-CC---CCCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCCCceeecCCCCh
Q 005374 278 HKVKVIFFS-KT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN 353 (699)
Q Consensus 278 ~~v~vl~f~-~~---~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~~~~ 353 (699)
+++.+++|. +. |....+.+..++.++.+.+.|..+... +..+++++++|.+.|++++|++ ++....+.|..+.
T Consensus 13 ~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d--~~~~l~~~~~v~~vPt~~i~~~-g~~v~~~~g~~~~ 89 (97)
T cd02949 13 DRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDID--EDQEIAEAAGIMGTPTVQFFKD-KELVKEISGVKMK 89 (97)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECC--CCHHHHHHCCCeeccEEEEEEC-CeEEEEEeCCccH
Confidence 456566553 32 222456666777788777788877643 2467999999999999999985 4333335777788
Q ss_pred hHHHHHHH
Q 005374 354 SRLSEVME 361 (699)
Q Consensus 354 ~~L~~fi~ 361 (699)
+.|.+|++
T Consensus 90 ~~~~~~l~ 97 (97)
T cd02949 90 SEYREFIE 97 (97)
T ss_pred HHHHHhhC
Confidence 88888763
No 243
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=96.25 E-value=0.024 Score=51.56 Aligned_cols=75 Identities=11% Similarity=0.150 Sum_probs=49.2
Q ss_pred cccchhhhhhhhhcCCCcEEEEEE-cCC---CCCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEE
Q 005374 262 YTKESMGKNFLAKTGPHKVKVIFF-SKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL 337 (699)
Q Consensus 262 it~~~~~~~Fl~~~~~~~v~vl~f-~~~---~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlf 337 (699)
+++. .+.+.+.....+.+.++.| .+. |....+.+..+|.+|. .+.|+.|.... . .++++|+|.+.||+++|
T Consensus 9 i~~~-~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-~v~f~~vd~~~--~-~l~~~~~i~~~Pt~~~f 83 (113)
T cd02957 9 ISSK-EFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP-ETKFVKINAEK--A-FLVNYLDIKVLPTLLVY 83 (113)
T ss_pred EcHH-HHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEEchh--h-HHHHhcCCCcCCEEEEE
Confidence 4443 2455444322124555544 432 3335677888888885 47888887543 2 79999999999999999
Q ss_pred cCCC
Q 005374 338 KDPG 341 (699)
Q Consensus 338 k~~~ 341 (699)
+++.
T Consensus 84 ~~G~ 87 (113)
T cd02957 84 KNGE 87 (113)
T ss_pred ECCE
Confidence 9854
No 244
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=96.22 E-value=0.038 Score=50.47 Aligned_cols=68 Identities=19% Similarity=0.334 Sum_probs=51.4
Q ss_pred chHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCC-CceeecCCCChhHHHHHHHH
Q 005374 292 ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGV-KPVVYYGSFNNSRLSEVMEQ 362 (699)
Q Consensus 292 ~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~-~pv~y~g~~~~~~L~~fi~~ 362 (699)
..+.+..++..+ +.+.|..+.... .+.++.+|+|.+.||+++|++++. ..+.+.|..+...+.+||..
T Consensus 40 ~~~~l~~la~~~-~~i~~~~vd~d~--~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~~~el~~~i~~ 108 (113)
T cd02975 40 TKQLLEELSELS-DKLKLEIYDFDE--DKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPAGYEFASLIED 108 (113)
T ss_pred HHHHHHHHHHhc-CceEEEEEeCCc--CHHHHHHcCCCcCCEEEEEeCCeecceEEEEecCchHHHHHHHHH
Confidence 457777777666 567888887543 478999999999999999997643 33457787777888888764
No 245
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=96.21 E-value=0.029 Score=50.17 Aligned_cols=90 Identities=20% Similarity=0.164 Sum_probs=57.6
Q ss_pred hhhhhhhcCCCcEEEEEE-cC---CCCCchHHHHHHHHhccCCceEEEEEccccc-cHhHHhhcCCCCCCEEEEEcCCCC
Q 005374 268 GKNFLAKTGPHKVKVIFF-SK---TGERASPFVRQISRNYWAYASFAFVLWREEE-SSIWWNTFEVESAPAIVFLKDPGV 342 (699)
Q Consensus 268 ~~~Fl~~~~~~~v~vl~f-~~---~~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~-s~~l~~kf~V~~~PtIvlfk~~~~ 342 (699)
+++.+... .+++.+|.| .+ .|....|.+..++.++ ..+.|+.|...... ...++++|+|.+.||+++|+++ +
T Consensus 6 ~~~~i~~~-~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G-~ 82 (103)
T cd02985 6 LDEALKKA-KGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDG-E 82 (103)
T ss_pred HHHHHHHc-CCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCC-e
Confidence 44555432 245666655 33 2333567788888888 67888888754321 1479999999999999999864 3
Q ss_pred CceeecCCCChhHHHHHHH
Q 005374 343 KPVVYYGSFNNSRLSEVME 361 (699)
Q Consensus 343 ~pv~y~g~~~~~~L~~fi~ 361 (699)
....+.|. ....|..-+.
T Consensus 83 ~v~~~~G~-~~~~l~~~~~ 100 (103)
T cd02985 83 KIHEEEGI-GPDELIGDVL 100 (103)
T ss_pred EEEEEeCC-CHHHHHHHHH
Confidence 33445664 4555655543
No 246
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=96.20 E-value=0.0096 Score=62.29 Aligned_cols=91 Identities=13% Similarity=0.102 Sum_probs=65.4
Q ss_pred CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccch--------hhhhHHHHhCCCCcccccccccEEEEc
Q 005374 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI--------RLATHLAERKPIGQIFFRRGLPSLVAF 223 (699)
Q Consensus 152 ~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~--------~~~~~L~~k~~i~~~f~V~gyPTl~~f 223 (699)
+++.-||.||...|++|++++|+...+++++. +.|-.|+.+.. .....++++++ |..+|++++.
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~------v~~~Pal~Lv 220 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLG------VKYFPALYLV 220 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcC------CccCceEEEE
Confidence 45688999999999999999999999999874 34555555532 11233778887 6699999998
Q ss_pred CCCCCCCCccccccCCcCHHHHHHHHHHH
Q 005374 224 PPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (699)
Q Consensus 224 ~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~ 252 (699)
..+... ....=.|..+.++|.+=+...
T Consensus 221 ~~~t~~--~~pv~~G~iS~deL~~Ri~~v 247 (256)
T TIGR02739 221 NPKSQK--MSPLAYGFISQDELKERILNV 247 (256)
T ss_pred ECCCCc--EEEEeeccCCHHHHHHHHHHH
Confidence 766432 111125889999998766544
No 247
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=96.09 E-value=0.031 Score=51.58 Aligned_cols=62 Identities=18% Similarity=0.229 Sum_probs=48.5
Q ss_pred ccCCceEEEEEccc---cccHhHHhhcCCC--CCCEEEEEcCCCCCceee--cCCCChhHHHHHHHHhh
Q 005374 303 YWAYASFAFVLWRE---EESSIWWNTFEVE--SAPAIVFLKDPGVKPVVY--YGSFNNSRLSEVMEQNK 364 (699)
Q Consensus 303 ~~~~~~Fg~V~~~~---~~s~~l~~kf~V~--~~PtIvlfk~~~~~pv~y--~g~~~~~~L~~fi~~~~ 364 (699)
-.+.+.++.|.+.+ .++.+|.++|+|. .+|.+++|..+.+.|+.| +|+++.++|..|++.|.
T Consensus 51 ~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t 119 (126)
T PF07912_consen 51 SSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNT 119 (126)
T ss_dssp C-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTS
T ss_pred CCCceEEEEeCcccccchhHHHHHHHhCCCcccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCC
Confidence 45688899998865 3458899999996 489999999878889988 99999999999999984
No 248
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.03 Score=59.16 Aligned_cols=109 Identities=12% Similarity=0.170 Sum_probs=79.9
Q ss_pred cceEEEecCCCCccccc---CCCcEEEEEecc----CCCCCCCcchHHHHHHHHhhcc--------cceeeeeccchhhh
Q 005374 135 VHAFNVVTSEDFPSIFH---DSKPWLIQVYSD----GSYLCGQFSGAWKTIAALLEGI--------ANTGMVELGDIRLA 199 (699)
Q Consensus 135 ~~~V~~Lt~~nF~~~v~---~~~~~lV~FYap----wC~hCk~l~p~~~~~A~~L~g~--------~~va~Vdc~~~~~~ 199 (699)
.+.|..+|+++|...+. .+-..+|+|.|- .|.-|+++..+|.-+|...... +=++.||-++.+.
T Consensus 39 ~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~- 117 (331)
T KOG2603|consen 39 ESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ- 117 (331)
T ss_pred CCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH-
Confidence 34689999999999983 455677888875 5999999999999999876321 1489999996554
Q ss_pred hHHHHhCCCCcccccccccEEEEcCCCCCCCCccccc---cCCcCHHHHHHHHHHH
Q 005374 200 THLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF---EGELSVDAVTDWFATA 252 (699)
Q Consensus 200 ~~L~~k~~i~~~f~V~gyPTl~~f~~g~~~~~~~~~Y---~G~rs~~~Iv~fi~k~ 252 (699)
+-+.++ ++..|+|++|.+....+.....+ .=...+++|.+|+.++
T Consensus 118 --~Fq~l~------ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~ 165 (331)
T KOG2603|consen 118 --VFQQLN------LNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADR 165 (331)
T ss_pred --HHHHhc------ccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHh
Confidence 777777 77999999996543221122222 2234599999999876
No 249
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=95.97 E-value=0.0069 Score=55.24 Aligned_cols=55 Identities=9% Similarity=0.054 Sum_probs=42.9
Q ss_pred CCCcEEEEEecc-CCCCCCCcchHHHHHHHHhhcc-cceeeeeccchhhhhHHHHhC
Q 005374 152 DSKPWLIQVYSD-GSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERK 206 (699)
Q Consensus 152 ~~~~~lV~FYap-wC~hCk~l~p~~~~~A~~L~g~-~~va~Vdc~~~~~~~~L~~k~ 206 (699)
.+++.+|.||+. ||++|....+.+.++..+++.. +.+..|..+.......+++++
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~ 80 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEY 80 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHH
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhh
Confidence 568999999999 9999999999999999999854 377777776444444455544
No 250
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.041 Score=49.93 Aligned_cols=81 Identities=21% Similarity=0.247 Sum_probs=60.0
Q ss_pred CcEEEEEEc----CCCCCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCCCceeecCCCCh
Q 005374 278 HKVKVIFFS----KTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN 353 (699)
Q Consensus 278 ~~v~vl~f~----~~~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~~~~ 353 (699)
+++.|+.|. ..+....|.+..+|.+|.+ +.|..|.+.+ ..++++.++|...||+++||++... .-+-|. +.
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde--~~~~~~~~~V~~~PTf~f~k~g~~~-~~~vGa-~~ 95 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDE--LEEVAKEFNVKAMPTFVFYKGGEEV-DEVVGA-NK 95 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEeccc--CHhHHHhcCceEeeEEEEEECCEEE-EEEecC-CH
Confidence 567777553 2345578999999999988 9999998765 6889999999999999999986543 223342 44
Q ss_pred hHHHHHHHHh
Q 005374 354 SRLSEVMEQN 363 (699)
Q Consensus 354 ~~L~~fi~~~ 363 (699)
..|.+.+..+
T Consensus 96 ~~l~~~i~~~ 105 (106)
T KOG0907|consen 96 AELEKKIAKH 105 (106)
T ss_pred HHHHHHHHhc
Confidence 4677666554
No 251
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=95.96 E-value=0.033 Score=55.08 Aligned_cols=81 Identities=12% Similarity=0.139 Sum_probs=54.9
Q ss_pred cEEEEEE-cCC---CCCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCCCc-ee-e----c
Q 005374 279 KVKVIFF-SKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKP-VV-Y----Y 348 (699)
Q Consensus 279 ~v~vl~f-~~~---~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~~p-v~-y----~ 348 (699)
.+.||.| .+. |....+.+..+|..|. .+.|..|.... . .++.+|+|...||+++|+++.... ++ + .
T Consensus 84 ~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~--~-~l~~~f~v~~vPTlllyk~G~~v~~~vG~~~~~g 159 (175)
T cd02987 84 TTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASA--T-GASDEFDTDALPALLVYKGGELIGNFVRVTEDLG 159 (175)
T ss_pred cEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccc--h-hhHHhCCCCCCCEEEEEECCEEEEEEechHHhcC
Confidence 3556655 332 2334677888998885 68899887543 2 699999999999999999854211 11 1 2
Q ss_pred CCCChhHHHHHHHHh
Q 005374 349 GSFNNSRLSEVMEQN 363 (699)
Q Consensus 349 g~~~~~~L~~fi~~~ 363 (699)
.+++.+.|..|+..+
T Consensus 160 ~~f~~~~le~~L~~~ 174 (175)
T cd02987 160 EDFDAEDLESFLVEY 174 (175)
T ss_pred CCCCHHHHHHHHHhc
Confidence 256778888887654
No 252
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.005 Score=58.56 Aligned_cols=62 Identities=24% Similarity=0.431 Sum_probs=51.3
Q ss_pred ccCcccccCcC--CCCCHHHHHHHHHHHHHhcCCCCCC--------ChHHHHHHHHHHHHHcCChhhhcccC
Q 005374 36 PPSHYDALGIK--PYSSVEQVKEAYEKFSSKWNSGEEI--------PSTADFLKIQYAYELLTDPLWKRNYD 97 (699)
Q Consensus 36 ~~d~Y~vLgv~--~~as~~eIk~ayr~l~~~~HPDk~~--------~~~~~f~~I~~Ay~vL~d~~~R~~YD 97 (699)
+.+||.++|.. ...+++-++.-|.-..++.|||+.. .+.+.-.++++||.+|+||.+|+.|=
T Consensus 7 ~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yi 78 (168)
T KOG3192|consen 7 PSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYL 78 (168)
T ss_pred HHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 66899999754 4556777777899999999999732 25677999999999999999999996
No 253
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=95.90 E-value=0.027 Score=59.28 Aligned_cols=117 Identities=13% Similarity=0.164 Sum_probs=76.1
Q ss_pred CchHHHHHHHHhccC-----CceEEEEEcccccc-HhHHhhcCCCCCCEEEEEcCCCCCceeecCCCChhHHHHHHHHhh
Q 005374 291 RASPFVRQISRNYWA-----YASFAFVLWREEES-SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNK 364 (699)
Q Consensus 291 ~~~~~~~~~A~~~~~-----~~~Fg~V~~~~~~s-~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~~~~~~L~~fi~~~~ 364 (699)
...|++..+|..+.. ++.+|.|. |+. .+|+++|.|.++||+-+|+.+.-..-.|-|.++.+.|.+||+...
T Consensus 30 ~L~piF~EAa~~~~~e~P~~kvvwg~VD---cd~e~~ia~ky~I~KyPTlKvfrnG~~~~rEYRg~RsVeaL~efi~kq~ 106 (375)
T KOG0912|consen 30 MLKPIFEEAAAKFKQEFPEGKVVWGKVD---CDKEDDIADKYHINKYPTLKVFRNGEMMKREYRGQRSVEALIEFIEKQL 106 (375)
T ss_pred HHhHHHHHHHHHHHHhCCCcceEEEEcc---cchhhHHhhhhccccCceeeeeeccchhhhhhccchhHHHHHHHHHHHh
Confidence 456777777766653 44566553 443 789999999999999999976543335888899999999998765
Q ss_pred ccccccCCccccccccccchhhhhhccCcCCCCCCCCCccceEEEEEec-cCChhHHHHHHHHHHHHHhhc
Q 005374 365 LQGLYFCGTCVSELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAG-RLSPELNKMRETIRRVQETLL 434 (699)
Q Consensus 365 ~~~~~~~~~~~~~vp~Lts~s~~~~~c~~~~~~~~~~~~~~~lCvI~~~-~~~~~~~~~~~~lr~~a~~l~ 434 (699)
-. .+.+..+.+.......+ ++ ...+.++. +++++++ .++++|..|+
T Consensus 107 s~----------~i~Ef~sl~~l~n~~~p------~K----~~vIgyF~~kdspey~----~~~kva~~lr 153 (375)
T KOG0912|consen 107 SD----------PINEFESLDQLQNLDIP------SK----RTVIGYFPSKDSPEYD----NLRKVASLLR 153 (375)
T ss_pred cc----------HHHHHHhHHHHHhhhcc------cc----ceEEEEeccCCCchHH----HHHHHHHHHh
Confidence 55 56666555554433322 22 24444444 4555554 3666777444
No 254
>PTZ00256 glutathione peroxidase; Provisional
Probab=95.75 E-value=0.046 Score=54.28 Aligned_cols=42 Identities=5% Similarity=-0.116 Sum_probs=34.4
Q ss_pred CCc-EEEEEeccCCCCCCCcchHHHHHHHHhhcc-cceeeeecc
Q 005374 153 SKP-WLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG 194 (699)
Q Consensus 153 ~~~-~lV~FYapwC~hCk~l~p~~~~~A~~L~g~-~~va~Vdc~ 194 (699)
+++ +|+.|+|.||+.|.+-.|.++++.+++++. +.|..|+|+
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 554 456668999999999999999999999865 478888874
No 255
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=95.66 E-value=0.027 Score=52.55 Aligned_cols=55 Identities=16% Similarity=0.236 Sum_probs=41.3
Q ss_pred CCcEEEEEe-ccCCCCCCCcchHHHHHHHHhhcc-cceeeeeccchhhhhHHHHhCC
Q 005374 153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKP 207 (699)
Q Consensus 153 ~~~~lV~FY-apwC~hCk~l~p~~~~~A~~L~g~-~~va~Vdc~~~~~~~~L~~k~~ 207 (699)
+++++|.|| +.||+.|....|.+.++...+... +.|..|..+........+++++
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 79 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYG 79 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhC
Confidence 678999999 689999999999999999988653 3666666664444444566554
No 256
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=95.59 E-value=0.035 Score=54.42 Aligned_cols=44 Identities=16% Similarity=0.107 Sum_probs=35.8
Q ss_pred CCCcEEEEEe-ccCCCCCCCcchHHHHHHHHhhcc-cceeeeeccc
Q 005374 152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGD 195 (699)
Q Consensus 152 ~~~~~lV~FY-apwC~hCk~l~p~~~~~A~~L~g~-~~va~Vdc~~ 195 (699)
.+++++|.|| +.||++|....|.+.++++++... +.|..|.++.
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~ 73 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDS 73 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 3578999999 899999999999999999999653 3566676653
No 257
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=95.56 E-value=0.065 Score=49.21 Aligned_cols=69 Identities=19% Similarity=0.264 Sum_probs=51.8
Q ss_pred CCcEEEEEEcCC----CCCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCCCceee
Q 005374 277 PHKVKVIFFSKT----GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVY 347 (699)
Q Consensus 277 ~~~v~vl~f~~~----~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~~pv~y 347 (699)
.+++.||-|+.+ |....|.+..+|.+|.+.+.|..|.+.+ .+++++.|+|...||.++|+++..-.+.+
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDe--v~dva~~y~I~amPtfvffkngkh~~~d~ 85 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDK--VPVYTQYFDISYIPSTIFFFNGQHMKVDY 85 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccc--cHHHHHhcCceeCcEEEEEECCcEEEEec
Confidence 367778867532 2335688888999997778899887543 68899999999899999999866544444
No 258
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=95.53 E-value=0.021 Score=59.43 Aligned_cols=91 Identities=16% Similarity=0.128 Sum_probs=62.4
Q ss_pred CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccc--h------hhhhHHHHhCCCCcccccccccEEEEc
Q 005374 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGD--I------RLATHLAERKPIGQIFFRRGLPSLVAF 223 (699)
Q Consensus 152 ~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~--~------~~~~~L~~k~~i~~~f~V~gyPTl~~f 223 (699)
.++.-||.||.+.|++|++++|+...+++.+.= .|-.|..+. . ......+++++ |..+|++++.
T Consensus 142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~--~v~~VS~DG~~~p~fp~~~~d~gqa~~l~------v~~~PAl~Lv 213 (248)
T PRK13703 142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGL--SVIPVSVDGVINPLLPDSRTDQGQAQRLG------VKYFPALMLV 213 (248)
T ss_pred HhcceEEEEECCCCchhHHHHHHHHHHHHHhCC--eEEEEecCCCCCCCCCCCccChhHHHhcC------CcccceEEEE
Confidence 456889999999999999999999999998742 333344331 1 11222556666 7799999999
Q ss_pred CCCCCCCCccccccCCcCHHHHHHHHHHH
Q 005374 224 PPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (699)
Q Consensus 224 ~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~ 252 (699)
..+... ....=.|..+.++|.+=+...
T Consensus 214 ~~~t~~--~~pv~~G~iS~deL~~Ri~~v 240 (248)
T PRK13703 214 DPKSGS--VRPLSYGFITQDDLAKRFLNV 240 (248)
T ss_pred ECCCCc--EEEEeeccCCHHHHHHHHHHH
Confidence 766432 111225888998887765443
No 259
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=95.51 E-value=0.019 Score=53.02 Aligned_cols=94 Identities=10% Similarity=0.080 Sum_probs=63.2
Q ss_pred cCCCcEEEEEecc----CCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEEEcCCC
Q 005374 151 HDSKPWLIQVYSD----GSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (699)
Q Consensus 151 ~~~~~~lV~FYap----wC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~f~~g 226 (699)
.+.+..+|.||+| ||..|+..- .=+++.+-++....+-..|++.... ..+|..++ +.+||++.++...
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l-~~~~v~~~ln~~fv~w~~dv~~~eg-~~la~~l~------~~~~P~~~~l~~~ 86 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTL-CAPEVIEYINTRMLFWACSVAKPEG-YRVSQALR------ERTYPFLAMIMLK 86 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHc-CCHHHHHHHHcCEEEEEEecCChHH-HHHHHHhC------CCCCCEEEEEEec
Confidence 3788999999999 888886543 1234445555544566677664332 34888888 6699999888321
Q ss_pred CCCCCccccccCCcCHHHHHHHHHHH
Q 005374 227 CKSSDCMTRFEGELSVDAVTDWFATA 252 (699)
Q Consensus 227 ~~~~~~~~~Y~G~rs~~~Iv~fi~k~ 252 (699)
...-.......|..++++|+..+...
T Consensus 87 ~~~~~vv~~i~G~~~~~~ll~~L~~~ 112 (116)
T cd02991 87 DNRMTIVGRLEGLIQPEDLINRLTFI 112 (116)
T ss_pred CCceEEEEEEeCCCCHHHHHHHHHHH
Confidence 11101234578999999999998765
No 260
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=95.51 E-value=0.027 Score=56.14 Aligned_cols=80 Identities=11% Similarity=-0.004 Sum_probs=55.0
Q ss_pred CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhccc-ceeeeecc--------chhhhhHHHH-hCCCCcccccccccEEE
Q 005374 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELG--------DIRLATHLAE-RKPIGQIFFRRGLPSLV 221 (699)
Q Consensus 152 ~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~-~va~Vdc~--------~~~~~~~L~~-k~~i~~~f~V~gyPTl~ 221 (699)
.++++||.|+|.||+.|++ .|.++++.+++++.+ .|-.|.|. .+......|+ ++++ .||.+-
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~-------~Fpv~~ 95 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGV-------TFPMFS 95 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCC-------CceeEE
Confidence 4689999999999999976 779999999997654 78889884 2334445675 5652 466442
Q ss_pred Ec-CCCCCCCCccccccCCcCHHHHHHHHHHH
Q 005374 222 AF-PPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (699)
Q Consensus 222 ~f-~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~ 252 (699)
=. .+| . .+.-|-.|++..
T Consensus 96 k~dvnG------------~-~~~pl~~~Lk~~ 114 (183)
T PRK10606 96 KIEVNG------------E-GRHPLYQKLIAA 114 (183)
T ss_pred EEccCC------------C-CCCHHHHHHHHh
Confidence 12 233 2 234677888776
No 261
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=95.49 E-value=0.061 Score=46.85 Aligned_cols=87 Identities=16% Similarity=0.265 Sum_probs=53.2
Q ss_pred hhhhhhhcCCCcEEEEEE-cCCC---CCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCCC
Q 005374 268 GKNFLAKTGPHKVKVIFF-SKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVK 343 (699)
Q Consensus 268 ~~~Fl~~~~~~~v~vl~f-~~~~---~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~~ 343 (699)
+++.+.... +++.++.| .+.+ ....+.+..++..+...+.|..+... +..+++++|+|.+.||+++|+++ +
T Consensus 5 ~~~~~~~~~-~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~--~~~~~~~~~~i~~~Pt~~~~~~g-~- 79 (97)
T cd02984 5 FEELLKSDA-SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAE--ELPEISEKFEITAVPTFVFFRNG-T- 79 (97)
T ss_pred HHHHHhhCC-CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccc--cCHHHHHhcCCccccEEEEEECC-E-
Confidence 444454433 34555544 4322 23456666677776556777777532 34679999999999999999854 2
Q ss_pred cee-ecCCCChhHHHHHH
Q 005374 344 PVV-YYGSFNNSRLSEVM 360 (699)
Q Consensus 344 pv~-y~g~~~~~~L~~fi 360 (699)
.+. ..| .+...|.+.|
T Consensus 80 ~~~~~~g-~~~~~l~~~~ 96 (97)
T cd02984 80 IVDRVSG-ADPKELAKKV 96 (97)
T ss_pred EEEEEeC-CCHHHHHHhh
Confidence 232 344 4566666554
No 262
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.48 E-value=0.027 Score=65.70 Aligned_cols=79 Identities=19% Similarity=0.230 Sum_probs=61.5
Q ss_pred CCcEEE-EEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEEEcCCCCCCCC
Q 005374 153 SKPWLI-QVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSD 231 (699)
Q Consensus 153 ~~~~lV-~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~f~~g~~~~~ 231 (699)
+++.-| -|++|+|++|.+....++++|.... .+..-.||+++++. ++++|+ |.++|++++ +|.
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-~i~~~~i~~~~~~~---~~~~~~------v~~vP~~~i--~~~---- 538 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVEAEMIDVSHFPD---LKDEYG------IMSVPAIVV--DDQ---- 538 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-CceEEEEECcccHH---HHHhCC------ceecCEEEE--CCE----
Confidence 345544 5689999999999999999998764 35677788885554 999998 779999887 442
Q ss_pred ccccccCCcCHHHHHHHH
Q 005374 232 CMTRFEGELSVDAVTDWF 249 (699)
Q Consensus 232 ~~~~Y~G~rs~~~Iv~fi 249 (699)
..|.|..+.+.|++|+
T Consensus 539 --~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 539 --QVYFGKKTIEEMLELI 554 (555)
T ss_pred --EEEeeCCCHHHHHHhh
Confidence 3467988999999886
No 263
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=95.46 E-value=0.03 Score=55.88 Aligned_cols=43 Identities=16% Similarity=0.120 Sum_probs=35.5
Q ss_pred CCCcEEEEEe-ccCCCCCCCcchHHHHHHHHhhccc-ceeeeecc
Q 005374 152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELG 194 (699)
Q Consensus 152 ~~~~~lV~FY-apwC~hCk~l~p~~~~~A~~L~g~~-~va~Vdc~ 194 (699)
.+++++|.|| +.||+.|..-.|.+.++.+++.... .|..|.++
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D 74 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTD 74 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 3678999999 9999999999999999999986543 56666665
No 264
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=95.46 E-value=0.036 Score=55.26 Aligned_cols=92 Identities=13% Similarity=0.122 Sum_probs=56.2
Q ss_pred CCCcEEEEEeccCCCCCCCcchHHHHHHHH-hhc--ccceeeeeccchhh-hhHHHH--------hCC-----------C
Q 005374 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAAL-LEG--IANTGMVELGDIRL-ATHLAE--------RKP-----------I 208 (699)
Q Consensus 152 ~~~~~lV~FYapwC~hCk~l~p~~~~~A~~-L~g--~~~va~Vdc~~~~~-~~~L~~--------k~~-----------i 208 (699)
.+++++|+|+|.||+.|..-.|..++++.. +.- .-....||.++... ...+.+ .++ +
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v 137 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAV 137 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchH
Confidence 589999999999999999999999999653 211 01236667553210 001111 111 1
Q ss_pred CcccccccccEE-EEcC-CCCCCCCccccccCCcCHHHHHH
Q 005374 209 GQIFFRRGLPSL-VAFP-PGCKSSDCMTRFEGELSVDAVTD 247 (699)
Q Consensus 209 ~~~f~V~gyPTl-~~f~-~g~~~~~~~~~Y~G~rs~~~Iv~ 247 (699)
.+.|.|.++|+- +++- +|.. ...+.|..+.+.+.+
T Consensus 138 ~~~~gv~~~P~T~fVIDk~GkV----v~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 138 KNAWQLNSEDSAIIVLDKTGKV----KFVKEGALSDSDIQT 174 (184)
T ss_pred HHhcCCCCCCceEEEECCCCcE----EEEEeCCCCHHHHHH
Confidence 124557799776 4554 3432 345679888887766
No 265
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=95.46 E-value=0.08 Score=50.58 Aligned_cols=96 Identities=11% Similarity=0.167 Sum_probs=61.6
Q ss_pred cchhhhhhhhhcCCCcEEEEEEc-C---CCCCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEE-EEc
Q 005374 264 KESMGKNFLAKTGPHKVKVIFFS-K---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIV-FLK 338 (699)
Q Consensus 264 ~~~~~~~Fl~~~~~~~v~vl~f~-~---~~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIv-lfk 338 (699)
+...+++.+... .+++.|+-|. + .|....|.+..+|.++.+.+.|..|.+.. .+++++.|+|.+.|+++ +||
T Consensus 10 s~~e~d~~I~~~-~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe--~~dla~~y~I~~~~t~~~ffk 86 (142)
T PLN00410 10 SGWAVDQAILAE-EERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITE--VPDFNTMYELYDPCTVMFFFR 86 (142)
T ss_pred CHHHHHHHHHhc-CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCC--CHHHHHHcCccCCCcEEEEEE
Confidence 333355555432 3556666553 2 23446788899999998888888887543 57999999999765555 888
Q ss_pred CCCCCceee-cC--------CCChhHHHHHHHHh
Q 005374 339 DPGVKPVVY-YG--------SFNNSRLSEVMEQN 363 (699)
Q Consensus 339 ~~~~~pv~y-~g--------~~~~~~L~~fi~~~ 363 (699)
++.. .+.+ .| ..+.++|.+.++..
T Consensus 87 ~g~~-~vd~~tG~~~k~~~~~~~k~~l~~~i~~~ 119 (142)
T PLN00410 87 NKHI-MIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
T ss_pred CCeE-EEEEecccccccccccCCHHHHHHHHHHH
Confidence 7542 3332 55 23556666666544
No 266
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=95.41 E-value=0.038 Score=53.34 Aligned_cols=70 Identities=20% Similarity=0.199 Sum_probs=49.5
Q ss_pred CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcc---cceeeeeccch----------------------hhhhHHHHhC
Q 005374 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDI----------------------RLATHLAERK 206 (699)
Q Consensus 152 ~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~---~~va~Vdc~~~----------------------~~~~~L~~k~ 206 (699)
.++++.+.|=|.||+.|+.|-|...++-+.++.. ..|.=|.-+.+ ....+|+++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 4689999999999999999999999998888765 23333333311 1222344444
Q ss_pred CCCcccccccccEEEEcCCCC
Q 005374 207 PIGQIFFRRGLPSLVAFPPGC 227 (699)
Q Consensus 207 ~i~~~f~V~gyPTl~~f~~g~ 227 (699)
+|.+.|++++..+..
T Consensus 112 ------~v~~iP~l~i~~~dG 126 (157)
T KOG2501|consen 112 ------EVKGIPALVILKPDG 126 (157)
T ss_pred ------ccCcCceeEEecCCC
Confidence 488999998886543
No 267
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=95.40 E-value=0.017 Score=49.75 Aligned_cols=80 Identities=8% Similarity=0.107 Sum_probs=53.7
Q ss_pred EEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhh-hhHHHHhCCCCcccccccccEEEEcCCCCCCCCccc
Q 005374 156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMT 234 (699)
Q Consensus 156 ~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~-~~~L~~k~~i~~~f~V~gyPTl~~f~~g~~~~~~~~ 234 (699)
-++.|+.|||++|++....+++++..+.+ +.+..+|.+++.. ...+.+..+.+ +.++|+|++ +|..
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~-i~~~~idi~~~~~~~~el~~~~~~~----~~~vP~ifi--~g~~------ 68 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDD-FDYRYVDIHAEGISKADLEKTVGKP----VETVPQIFV--DQKH------ 68 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccC-CcEEEEECCCChHHHHHHHHHHCCC----CCcCCEEEE--CCEE------
Confidence 36789999999999999999998876643 4677888775421 12244444422 568999763 5532
Q ss_pred cccCCcCHHHHHHHHHHH
Q 005374 235 RFEGELSVDAVTDWFATA 252 (699)
Q Consensus 235 ~Y~G~rs~~~Iv~fi~k~ 252 (699)
-| ..++|.++++..
T Consensus 69 --ig--g~~~~~~~~~~~ 82 (85)
T PRK11200 69 --IG--GCTDFEAYVKEN 82 (85)
T ss_pred --Ec--CHHHHHHHHHHh
Confidence 22 347788887765
No 268
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=95.39 E-value=0.026 Score=55.17 Aligned_cols=55 Identities=9% Similarity=0.051 Sum_probs=43.8
Q ss_pred CCCcEEEEEeccC-CCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCC
Q 005374 152 DSKPWLIQVYSDG-SYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKP 207 (699)
Q Consensus 152 ~~~~~lV~FYapw-C~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~ 207 (699)
.+++++|.||+.| |+.|..-.|.+.++++++. .+.|..|.++........+++++
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~ 98 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEG 98 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCC
Confidence 3678999999999 9999999999999999985 34777788875444555677765
No 269
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=95.31 E-value=0.027 Score=52.98 Aligned_cols=55 Identities=13% Similarity=0.142 Sum_probs=39.6
Q ss_pred CCcEEEEE-eccCCCCCCCcchHHHHHHHHhhcc-cceeeeeccchhhhhHHHHhCC
Q 005374 153 SKPWLIQV-YSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKP 207 (699)
Q Consensus 153 ~~~~lV~F-YapwC~hCk~l~p~~~~~A~~L~g~-~~va~Vdc~~~~~~~~L~~k~~ 207 (699)
+++++|.| .+.||+.|+...|.+.++.+++... +.+..|+.+........+++.+
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~ 79 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKF 79 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcC
Confidence 34555555 5999999999999999999999654 4778888775444444555554
No 270
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=95.24 E-value=0.083 Score=44.39 Aligned_cols=78 Identities=19% Similarity=0.266 Sum_probs=52.3
Q ss_pred cEEEEEE-cCC---CCCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCCCceeecCCCChh
Q 005374 279 KVKVIFF-SKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNS 354 (699)
Q Consensus 279 ~v~vl~f-~~~---~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~~~~~ 354 (699)
++.+++| +.. +....+.+..++.. ...+.|+.+.... ...+++.|++.+.|++++|+++. ....+.|..+.+
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~--~~~~~~~~~v~~~P~~~~~~~g~-~~~~~~g~~~~~ 86 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDE--NPELAEEYGVRSIPTFLFFKNGK-EVDRVVGADPKE 86 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCC--ChhHHHhcCcccccEEEEEECCE-EEEEEecCCCHH
Confidence 3545555 332 22344555556655 4678888876443 46799999999999999998654 333467777778
Q ss_pred HHHHHH
Q 005374 355 RLSEVM 360 (699)
Q Consensus 355 ~L~~fi 360 (699)
.|.+||
T Consensus 87 ~l~~~i 92 (93)
T cd02947 87 ELEEFL 92 (93)
T ss_pred HHHHHh
Confidence 888876
No 271
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=95.22 E-value=0.05 Score=52.01 Aligned_cols=56 Identities=11% Similarity=0.046 Sum_probs=41.1
Q ss_pred CCCcEEEEEecc-CCCCCCCcchHHHHHHHHhhcc-cceeeeeccchhhhhHHHHhCC
Q 005374 152 DSKPWLIQVYSD-GSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKP 207 (699)
Q Consensus 152 ~~~~~lV~FYap-wC~hCk~l~p~~~~~A~~L~g~-~~va~Vdc~~~~~~~~L~~k~~ 207 (699)
.+++++|.||+. ||+.|....+.+.++++.+++. +.|..|..+........+++++
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~ 86 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKEL 86 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhC
Confidence 467899999975 6889999999999999998754 3677777665444444555554
No 272
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.16 E-value=0.045 Score=63.27 Aligned_cols=83 Identities=14% Similarity=0.125 Sum_probs=66.3
Q ss_pred CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEEEcCCCCCCCC
Q 005374 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSD 231 (699)
Q Consensus 152 ~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~f~~g~~~~~ 231 (699)
+...-+-.|++|.|++|.+....++++|.. .+.+..-.||+.+++. ++++|+ |.++|++++ ++.
T Consensus 115 ~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~-~~~i~~~~id~~~~~~---~~~~~~------v~~VP~~~i--~~~---- 178 (517)
T PRK15317 115 DGDFHFETYVSLSCHNCPDVVQALNLMAVL-NPNITHTMIDGALFQD---EVEARN------IMAVPTVFL--NGE---- 178 (517)
T ss_pred CCCeEEEEEEcCCCCCcHHHHHHHHHHHHh-CCCceEEEEEchhCHh---HHHhcC------CcccCEEEE--CCc----
Confidence 345668889999999999999999888874 4456788889885555 999998 669999965 442
Q ss_pred ccccccCCcCHHHHHHHHHHH
Q 005374 232 CMTRFEGELSVDAVTDWFATA 252 (699)
Q Consensus 232 ~~~~Y~G~rs~~~Iv~fi~k~ 252 (699)
..|.|..+.+.|++.+.+.
T Consensus 179 --~~~~g~~~~~~~~~~~~~~ 197 (517)
T PRK15317 179 --EFGQGRMTLEEILAKLDTG 197 (517)
T ss_pred --EEEecCCCHHHHHHHHhcc
Confidence 3578999999999998764
No 273
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=95.09 E-value=0.068 Score=49.24 Aligned_cols=63 Identities=13% Similarity=0.169 Sum_probs=43.5
Q ss_pred HHhccCCceEEEEEcccc-----------ccHhHHhhcCCCCCCEEEEEcCC-CCCceeecCCCChhHHHHHHHH
Q 005374 300 SRNYWAYASFAFVLWREE-----------ESSIWWNTFEVESAPAIVFLKDP-GVKPVVYYGSFNNSRLSEVMEQ 362 (699)
Q Consensus 300 A~~~~~~~~Fg~V~~~~~-----------~s~~l~~kf~V~~~PtIvlfk~~-~~~pv~y~g~~~~~~L~~fi~~ 362 (699)
...+.+.+.+..+..... ....++.+|+|.+.|++++|.++ ++......|..+.+.+..+++.
T Consensus 43 ~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~ 117 (125)
T cd02951 43 QAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEY 117 (125)
T ss_pred HHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHH
Confidence 333444566666654332 12579999999999999999986 4444446888888888777764
No 274
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=94.98 E-value=0.012 Score=54.58 Aligned_cols=75 Identities=16% Similarity=0.118 Sum_probs=44.6
Q ss_pred CCCcEEEEEec-------cCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEEEcC
Q 005374 152 DSKPWLIQVYS-------DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFP 224 (699)
Q Consensus 152 ~~~~~lV~FYa-------pwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~f~ 224 (699)
++++.+|.|++ +||+.|....|..+++-........+..|.....+.=..-...|..+..+.|+++|||+-+.
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~ 97 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWE 97 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECT
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEEC
Confidence 56788999985 49999999999999988776554566667665221111111122211135588999999987
Q ss_pred CC
Q 005374 225 PG 226 (699)
Q Consensus 225 ~g 226 (699)
.+
T Consensus 98 ~~ 99 (119)
T PF06110_consen 98 TG 99 (119)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 275
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=94.85 E-value=0.049 Score=51.31 Aligned_cols=55 Identities=13% Similarity=0.081 Sum_probs=42.1
Q ss_pred CCCcEEEEEeccC-CCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCC
Q 005374 152 DSKPWLIQVYSDG-SYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKP 207 (699)
Q Consensus 152 ~~~~~lV~FYapw-C~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~ 207 (699)
.+++++|.||+.| |++|..-.|.+.++.+++++ +.|..|+.+........+++++
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~-~~vi~Is~d~~~~~~~~~~~~~ 80 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDN-TVVLTISADLPFAQKRWCGAEG 80 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCC-CEEEEEECCCHHHHHHHHHhcC
Confidence 3678999999998 69999999999999999864 4677888775433344555554
No 276
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=94.75 E-value=0.047 Score=51.63 Aligned_cols=54 Identities=17% Similarity=0.123 Sum_probs=40.4
Q ss_pred CcEEEEEe-ccCCCCCCCcchHHHHHHHHhhcc-cceeeeeccchhhhhHHHHhCC
Q 005374 154 KPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKP 207 (699)
Q Consensus 154 ~~~lV~FY-apwC~hCk~l~p~~~~~A~~L~g~-~~va~Vdc~~~~~~~~L~~k~~ 207 (699)
++++|.|| +.||+.|....|.+.++++++... +.+..|+.+........+++++
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~ 84 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENG 84 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcC
Confidence 67777777 999999999999999999999643 4777777764434444555554
No 277
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=94.68 E-value=0.02 Score=56.60 Aligned_cols=76 Identities=16% Similarity=0.190 Sum_probs=63.2
Q ss_pred CCCCcccccCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEEE
Q 005374 143 SEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA 222 (699)
Q Consensus 143 ~~nF~~~v~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~ 222 (699)
...|-..+....-+++.||-|.-..|+-+-...+.+|+..-+ .+|.+||+..-+- |+.+++ |+-.|+|.+
T Consensus 74 Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-TrFikvnae~~PF---lv~kL~------IkVLP~v~l 143 (211)
T KOG1672|consen 74 EKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-TRFIKVNAEKAPF---LVTKLN------IKVLPTVAL 143 (211)
T ss_pred HHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhccc-ceEEEEecccCce---eeeeee------eeEeeeEEE
Confidence 556666666677789999999999999999999999987533 2899999995444 899998 779999999
Q ss_pred cCCCCC
Q 005374 223 FPPGCK 228 (699)
Q Consensus 223 f~~g~~ 228 (699)
|.+|..
T Consensus 144 ~k~g~~ 149 (211)
T KOG1672|consen 144 FKNGKT 149 (211)
T ss_pred EEcCEE
Confidence 999954
No 278
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=94.58 E-value=0.074 Score=48.63 Aligned_cols=100 Identities=17% Similarity=0.170 Sum_probs=67.5
Q ss_pred EecCCCCcccccCCCcEEEEEe----ccCCCCCCCcchHHHHHHHHhh-cccceeeeeccchhhhhHHHHhCCCCccccc
Q 005374 140 VVTSEDFPSIFHDSKPWLIQVY----SDGSYLCGQFSGAWKTIAALLE-GIANTGMVELGDIRLATHLAERKPIGQIFFR 214 (699)
Q Consensus 140 ~Lt~~nF~~~v~~~~~~lV~FY----apwC~hCk~l~p~~~~~A~~L~-g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V 214 (699)
++|.+|..... ..+.++.|| ++.-..-..+...+.++|+.++ |.+.++.+|.++... ..+.+|+. =
T Consensus 3 ~~~~en~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~---~l~~fgl~----~ 73 (111)
T cd03073 3 HRTKDNRAQFT--KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSH---ELEEFGLD----F 73 (111)
T ss_pred eeccchHHHhc--cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHH---HHHHcCCC----c
Confidence 45666665543 334455554 2222334568889999999999 688999999985433 67788844 2
Q ss_pred cc--ccEEEEcCCCCCCCCccccccCCc-CHHHHHHHHHHH
Q 005374 215 RG--LPSLVAFPPGCKSSDCMTRFEGEL-SVDAVTDWFATA 252 (699)
Q Consensus 215 ~g--yPTl~~f~~g~~~~~~~~~Y~G~r-s~~~Iv~fi~k~ 252 (699)
.. +|++.++..... .+. ..+.. +.++|.+|+.+.
T Consensus 74 ~~~~~P~~~i~~~~~~---KY~-~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 74 SGGEKPVVAIRTAKGK---KYV-MEEEFSDVDALEEFLEDF 110 (111)
T ss_pred ccCCCCEEEEEeCCCC---ccC-CCcccCCHHHHHHHHHHh
Confidence 24 999999874322 122 46778 999999999764
No 279
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=94.50 E-value=0.12 Score=49.88 Aligned_cols=70 Identities=16% Similarity=0.202 Sum_probs=47.9
Q ss_pred hhhhhhhcCCCcEEEE-EEcCC---CCCchHHHHHHHHhccC-CceEEEEEccccccHhHHhhcCCCC------CCEEEE
Q 005374 268 GKNFLAKTGPHKVKVI-FFSKT---GERASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVES------APAIVF 336 (699)
Q Consensus 268 ~~~Fl~~~~~~~v~vl-~f~~~---~~~~~~~~~~~A~~~~~-~~~Fg~V~~~~~~s~~l~~kf~V~~------~PtIvl 336 (699)
+++.+.... ..+.+| |+.+. |....|.+..+|.++.+ .+.|+.|.... ..+++++|+|.+ .||+++
T Consensus 38 f~~~l~~~~-~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~--~~~la~~~~V~~~~~v~~~PT~il 114 (152)
T cd02962 38 LEEELERDK-RVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR--FPNVAEKFRVSTSPLSKQLPTIIL 114 (152)
T ss_pred HHHHHHhcC-CCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC--CHHHHHHcCceecCCcCCCCEEEE
Confidence 555554332 334444 55432 33456778888888864 48889887543 578999999987 999999
Q ss_pred EcCC
Q 005374 337 LKDP 340 (699)
Q Consensus 337 fk~~ 340 (699)
|+++
T Consensus 115 f~~G 118 (152)
T cd02962 115 FQGG 118 (152)
T ss_pred EECC
Confidence 9964
No 280
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=94.46 E-value=0.22 Score=41.81 Aligned_cols=66 Identities=18% Similarity=0.287 Sum_probs=48.4
Q ss_pred CCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCCCceeecCCCChhHHHHHHHH
Q 005374 290 ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (699)
Q Consensus 290 ~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~~~~~~L~~fi~~ 362 (699)
....+.+..++.++...+.+..|... +..+++++|++.+.|++++ + +. ..+.|..+.+.|.+++..
T Consensus 15 ~~~~~~l~~l~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~vPt~~~--~-g~--~~~~G~~~~~~l~~~l~~ 80 (82)
T TIGR00411 15 PAAKRVVEEVAKEMGDAVEVEYINVM--ENPQKAMEYGIMAVPAIVI--N-GD--VEFIGAPTKEELVEAIKK 80 (82)
T ss_pred HHHHHHHHHHHHHhcCceEEEEEeCc--cCHHHHHHcCCccCCEEEE--C-CE--EEEecCCCHHHHHHHHHh
Confidence 33466777777777767777887643 3567899999999999986 3 22 356787788888888764
No 281
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=94.45 E-value=0.054 Score=50.70 Aligned_cols=43 Identities=12% Similarity=0.043 Sum_probs=36.6
Q ss_pred CCCcEEEEEeccCCCC-CCCcchHHHHHHHHhhcc----cceeeeecc
Q 005374 152 DSKPWLIQVYSDGSYL-CGQFSGAWKTIAALLEGI----ANTGMVELG 194 (699)
Q Consensus 152 ~~~~~lV~FYapwC~h-Ck~l~p~~~~~A~~L~g~----~~va~Vdc~ 194 (699)
.+++++|.||++||+. |.+..+.+.++...++.. +.+..|.++
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 4688999999999997 999999999999999653 567777765
No 282
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=94.11 E-value=0.066 Score=43.53 Aligned_cols=54 Identities=13% Similarity=0.097 Sum_probs=35.6
Q ss_pred EEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhh-hhHHHHhCCCCcccccccccEEEE
Q 005374 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVA 222 (699)
Q Consensus 157 lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~-~~~L~~k~~i~~~f~V~gyPTl~~ 222 (699)
++.|+++||++|.++...+++. + +.+..++.+.+.. ...+.+..+ +.++|+|.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-----~-i~~~~~~i~~~~~~~~~~~~~~~------~~~vP~i~~ 56 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-----G-IPFEEVDVDEDPEALEELKKLNG------YRSVPVVVI 56 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-----C-CCeEEEeCCCCHHHHHHHHHHcC------CcccCEEEE
Confidence 5789999999999977766552 2 3566777764332 122333334 559999976
No 283
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.11 E-value=0.23 Score=50.46 Aligned_cols=68 Identities=15% Similarity=0.156 Sum_probs=57.8
Q ss_pred cCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEEEcCCCCC
Q 005374 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCK 228 (699)
Q Consensus 151 ~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~f~~g~~ 228 (699)
...+..++.|+++||..|+++...++.+|+.. ....+.+++.++.+. +|+.+. |...|.++++..|..
T Consensus 15 ~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~e---is~~~~------v~~vp~~~~~~~~~~ 82 (227)
T KOG0911|consen 15 QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPE---ISNLIA------VEAVPYFVFFFLGEK 82 (227)
T ss_pred hccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhH---HHHHHH------HhcCceeeeeecchh
Confidence 46778889999999999999999999999988 456899999995444 888877 669999999977754
No 284
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=94.06 E-value=0.11 Score=48.47 Aligned_cols=55 Identities=18% Similarity=0.107 Sum_probs=41.2
Q ss_pred CCCcEEEEEe-ccCCCCCCCcchHHHHHHHHhhc-ccceeeeeccchhhhhHHHHhC
Q 005374 152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEG-IANTGMVELGDIRLATHLAERK 206 (699)
Q Consensus 152 ~~~~~lV~FY-apwC~hCk~l~p~~~~~A~~L~g-~~~va~Vdc~~~~~~~~L~~k~ 206 (699)
.+++++|.|| +.||+.|....|.+.++..+++. .+.|..|..+........+++.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~ 77 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKE 77 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcc
Confidence 4778899988 78999999999999999999953 3477777776433333344544
No 285
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=94.06 E-value=0.25 Score=49.71 Aligned_cols=80 Identities=10% Similarity=0.163 Sum_probs=52.4
Q ss_pred CcEEEEEE-cCC---CCCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCCCcee-----ec
Q 005374 278 HKVKVIFF-SKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVV-----YY 348 (699)
Q Consensus 278 ~~v~vl~f-~~~---~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~~pv~-----y~ 348 (699)
+.++||.| .+. |....+.+..+|..|. .+.|..|.+. .....|++...||+++|+++....-. ..
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad-----~~~~~~~i~~lPTlliyk~G~~v~~ivG~~~~g 175 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIIST-----QCIPNYPDKNLPTILVYRNGDIVKQFIGLLEFG 175 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhH-----HhHhhCCCCCCCEEEEEECCEEEEEEeCchhhC
Confidence 34555544 332 3335678888999885 5889988643 34689999999999999986422111 11
Q ss_pred C-CCChhHHHHHHHHh
Q 005374 349 G-SFNNSRLSEVMEQN 363 (699)
Q Consensus 349 g-~~~~~~L~~fi~~~ 363 (699)
| .++..+|..++.++
T Consensus 176 g~~~~~~~lE~~L~~~ 191 (192)
T cd02988 176 GMNTTMEDLEWLLVQV 191 (192)
T ss_pred CCCCCHHHHHHHHHhc
Confidence 2 46777787777643
No 286
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=94.05 E-value=0.15 Score=46.64 Aligned_cols=73 Identities=15% Similarity=0.152 Sum_probs=47.0
Q ss_pred hhhhhhhcCCCcEEEEEE-cCC---CCCchHHHHHHHHhccC---CceEEEEEccccccHhHHhhcCCCCCCEEEEEcCC
Q 005374 268 GKNFLAKTGPHKVKVIFF-SKT---GERASPFVRQISRNYWA---YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDP 340 (699)
Q Consensus 268 ~~~Fl~~~~~~~v~vl~f-~~~---~~~~~~~~~~~A~~~~~---~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~ 340 (699)
++..+... +++.++.| .+- |....+.+..++..+++ .+.|+.+.........++++|+|..+|++++|+++
T Consensus 11 f~~~i~~~--~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~lf~~~ 88 (114)
T cd02992 11 FNSALLGS--PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRYFPPF 88 (114)
T ss_pred HHHHHhcC--CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEEECCC
Confidence 45544432 34555544 432 33356777778877653 47777775433234679999999999999999987
Q ss_pred CC
Q 005374 341 GV 342 (699)
Q Consensus 341 ~~ 342 (699)
..
T Consensus 89 ~~ 90 (114)
T cd02992 89 SK 90 (114)
T ss_pred Cc
Confidence 53
No 287
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=94.04 E-value=0.12 Score=51.63 Aligned_cols=97 Identities=11% Similarity=0.010 Sum_probs=61.2
Q ss_pred CCCcEEEEEe-ccCCCCCCCcchHHHHHHHHhhccc-ceeeeeccchhh----------------------hhHHHHhCC
Q 005374 152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRL----------------------ATHLAERKP 207 (699)
Q Consensus 152 ~~~~~lV~FY-apwC~hCk~l~p~~~~~A~~L~g~~-~va~Vdc~~~~~----------------------~~~L~~k~~ 207 (699)
.++++++.|| +.||+.|..-.+.+.+...+++... .|..|.++.... ...+++.|+
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 3567888999 9999999999999999999996543 566666553211 123566666
Q ss_pred CCcccccccc--cEEEEcCCCCCCCCccc-cc--cCCcCHHHHHHHHHHH
Q 005374 208 IGQIFFRRGL--PSLVAFPPGCKSSDCMT-RF--EGELSVDAVTDWFATA 252 (699)
Q Consensus 208 i~~~f~V~gy--PTl~~f~~g~~~~~~~~-~Y--~G~rs~~~Iv~fi~k~ 252 (699)
+-.. -.+. |+.+++-+.+.. .+. .+ ...++++.+.+.+...
T Consensus 110 v~~~--~~g~~~r~tfIID~~G~I--~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 110 NMRE--DEGLADRATFVVDPQGII--QAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred CCcc--cCCceeeEEEEECCCCEE--EEEEEeCCCCCCCHHHHHHHHHhh
Confidence 3100 0255 888887533322 111 11 2457889988888543
No 288
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=93.75 E-value=0.06 Score=48.86 Aligned_cols=80 Identities=15% Similarity=0.154 Sum_probs=53.4
Q ss_pred EEEecCCCCcccccCCCcEEEEEeccCCCC---CCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCccccc
Q 005374 138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYL---CGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFR 214 (699)
Q Consensus 138 V~~Lt~~nF~~~v~~~~~~lV~FYapwC~h---Ck~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V 214 (699)
...++.++++..+......++.|.. -|.. |...+=+.-++.+.+.+....+.|.-. .+..|+.+|+ |
T Consensus 11 ~~~vd~~~ld~~l~~~~~~vlf~~g-Dp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~---~e~~L~~r~g------v 80 (107)
T PF07449_consen 11 WPRVDADTLDAFLAAPGDAVLFFAG-DPARFPETADVAVILPELVKAFPGRFRGAVVARA---AERALAARFG------V 80 (107)
T ss_dssp EEEE-CCCHHHHHHCCSCEEEEESS--TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHH---HHHHHHHHHT-------
T ss_pred CeeechhhHHHHHhCCCcEEEEECC-CCCcCcccccceeEcHHHHHhhhCccceEEECch---hHHHHHHHhC------C
Confidence 4678888999888766665555554 3444 444333555666666666666667744 4556999998 6
Q ss_pred ccccEEEEcCCCC
Q 005374 215 RGLPSLVAFPPGC 227 (699)
Q Consensus 215 ~gyPTl~~f~~g~ 227 (699)
..+|++++|++|.
T Consensus 81 ~~~PaLvf~R~g~ 93 (107)
T PF07449_consen 81 RRWPALVFFRDGR 93 (107)
T ss_dssp TSSSEEEEEETTE
T ss_pred ccCCeEEEEECCE
Confidence 6999999999984
No 289
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=93.69 E-value=0.096 Score=52.52 Aligned_cols=26 Identities=12% Similarity=0.165 Sum_probs=22.7
Q ss_pred CCCcEEEEEeccCCCCCCCcchHHHH
Q 005374 152 DSKPWLIQVYSDGSYLCGQFSGAWKT 177 (699)
Q Consensus 152 ~~~~~lV~FYapwC~hCk~l~p~~~~ 177 (699)
+.++.++.|+.|.|++|+++.+...+
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh
Confidence 46889999999999999999887764
No 290
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=93.57 E-value=0.068 Score=43.15 Aligned_cols=54 Identities=7% Similarity=0.105 Sum_probs=36.8
Q ss_pred EEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhh-hhHHHHhCCCCcccccccccEEEE
Q 005374 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVA 222 (699)
Q Consensus 157 lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~-~~~L~~k~~i~~~f~V~gyPTl~~ 222 (699)
++.|+++||++|+++...+++.. +.+-.+|...+.. ...+.+..+ ...+|++.+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~------~~~~P~~~~ 56 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSG------WPTVPQIFI 56 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhC------CCCcCEEEE
Confidence 56889999999999887777654 4666778775442 233455555 347887743
No 291
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.49 E-value=0.039 Score=50.55 Aligned_cols=79 Identities=10% Similarity=-0.000 Sum_probs=54.1
Q ss_pred CCcccc---cCCCcEEEEEec--------cCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccc
Q 005374 145 DFPSIF---HDSKPWLIQVYS--------DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF 213 (699)
Q Consensus 145 nF~~~v---~~~~~~lV~FYa--------pwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~ 213 (699)
.|++.+ .+++..+|.|++ +||+.|.+..|...++-+.......|..|+..+-+.=...+..|. +.+.
T Consensus 14 ~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR--~d~~ 91 (128)
T KOG3425|consen 14 SFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFR--KDPG 91 (128)
T ss_pred HHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccc--cCCC
Confidence 455554 355568899995 599999999999999988665556888888875333222334443 2233
Q ss_pred c-ccccEEEEcCC
Q 005374 214 R-RGLPSLVAFPP 225 (699)
Q Consensus 214 V-~gyPTl~~f~~ 225 (699)
+ .++|||.=+.+
T Consensus 92 ~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 92 ILTAVPTLLRWKR 104 (128)
T ss_pred ceeecceeeEEcC
Confidence 4 89999987764
No 292
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=93.43 E-value=0.1 Score=44.52 Aligned_cols=31 Identities=10% Similarity=0.181 Sum_probs=25.1
Q ss_pred EEEEeccCCCCCCCcchHHHHHHHHhhcccc
Q 005374 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIAN 187 (699)
Q Consensus 157 lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~ 187 (699)
++.|+++.|++|..+.+..+++.....+.+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~ 31 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVR 31 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEE
Confidence 4689999999999999999999755555443
No 293
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=93.41 E-value=0.056 Score=45.62 Aligned_cols=58 Identities=14% Similarity=0.157 Sum_probs=36.1
Q ss_pred EEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchh-h-hhHHHHhCCCCcccccccccEEEEcCCC
Q 005374 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-L-ATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (699)
Q Consensus 157 lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~-~-~~~L~~k~~i~~~f~V~gyPTl~~f~~g 226 (699)
++.|+++||++|+.+...++++... ..+-.|+...+. . ...+.+..+ +.++|++ |.+|
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~g------~~~~P~v--~~~g 61 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK----PAVVELDQHEDGSEIQDYLQELTG------QRTVPNV--FIGG 61 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC----cEEEEEeCCCChHHHHHHHHHHhC------CCCCCeE--EECC
Confidence 5789999999999999888877542 233344443221 1 122444445 5689986 4455
No 294
>PTZ00051 thioredoxin; Provisional
Probab=93.35 E-value=0.28 Score=42.75 Aligned_cols=87 Identities=21% Similarity=0.229 Sum_probs=51.5
Q ss_pred cccchhhhhhhhhcCCCcEEEEEE-cCCC---CCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEE
Q 005374 262 YTKESMGKNFLAKTGPHKVKVIFF-SKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL 337 (699)
Q Consensus 262 it~~~~~~~Fl~~~~~~~v~vl~f-~~~~---~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlf 337 (699)
+++.+.+...+. .+++.+++| .+.+ ....+.+..++..+. .+.|+.+... +...++++|+|.+.|++++|
T Consensus 5 i~~~~~~~~~~~---~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~ 78 (98)
T PTZ00051 5 VTSQAEFESTLS---QNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-KMVFVKVDVD--ELSEVAEKENITSMPTFKVF 78 (98)
T ss_pred ecCHHHHHHHHh---cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-CcEEEEEECc--chHHHHHHCCCceeeEEEEE
Confidence 333333455543 244555555 3322 234566666777654 4677777543 24679999999999999999
Q ss_pred cCCCCCceeecCCCChhHH
Q 005374 338 KDPGVKPVVYYGSFNNSRL 356 (699)
Q Consensus 338 k~~~~~pv~y~g~~~~~~L 356 (699)
+++. ....+.|. ..+.|
T Consensus 79 ~~g~-~~~~~~G~-~~~~~ 95 (98)
T PTZ00051 79 KNGS-VVDTLLGA-NDEAL 95 (98)
T ss_pred eCCe-EEEEEeCC-CHHHh
Confidence 8643 32234553 44444
No 295
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=93.30 E-value=0.16 Score=52.55 Aligned_cols=87 Identities=15% Similarity=0.185 Sum_probs=58.3
Q ss_pred CCCcEEEEEeccCCCCCCCcchHHHHHHHH-h---------hcc---------------------------cceeeeecc
Q 005374 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAAL-L---------EGI---------------------------ANTGMVELG 194 (699)
Q Consensus 152 ~~~~~lV~FYapwC~hCk~l~p~~~~~A~~-L---------~g~---------------------------~~va~Vdc~ 194 (699)
+.+..++.|..|.|++|+++.+++.++.+. + .|. ..+..-.|.
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~ 185 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCD 185 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccccc
Confidence 567889999999999999999888776431 0 000 001111232
Q ss_pred c-hhhhhHHHHhCCCCcccccccccEEEEcCCCCCCCCccccccCCcCHHHHHHHHHHH
Q 005374 195 D-IRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (699)
Q Consensus 195 ~-~~~~~~L~~k~~i~~~f~V~gyPTl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~ 252 (699)
. -.....+|+++| |+|.|||+ |.+|. ...|....+.|.+++...
T Consensus 186 ~~v~~~~~la~~lg------i~gTPtiv-~~~G~-------~~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 186 VDIADHYALGVQFG------VQGTPAIV-LSNGT-------LVPGYQGPKEMKAFLDEH 230 (232)
T ss_pred chHHHhHHHHHHcC------CccccEEE-EcCCe-------EeeCCCCHHHHHHHHHHc
Confidence 1 122334777777 77999998 67774 348989999999998754
No 296
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=93.07 E-value=0.08 Score=56.09 Aligned_cols=87 Identities=9% Similarity=0.191 Sum_probs=67.8
Q ss_pred CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEEEcCCCCCCCC
Q 005374 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSD 231 (699)
Q Consensus 152 ~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~f~~g~~~~~ 231 (699)
...++-+.||+.||+......|++.-....+..+-.++ .++........++++ +.+.|++.+....
T Consensus 75 ~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~---vee~~~lpsv~s~~~------~~~~ps~~~~n~t----- 140 (319)
T KOG2640|consen 75 KNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFA---VEESQALPSVFSSYG------IHSEPSNLMLNQT----- 140 (319)
T ss_pred cCCcccccchhcccCcccccCcccchhhhhcccccccc---HHHHhhcccchhccc------cccCCcceeeccc-----
Confidence 45667789999999999999999988877766332333 334445555778888 5599999887765
Q ss_pred ccccccCCcCHHHHHHHHHHH
Q 005374 232 CMTRFEGELSVDAVTDWFATA 252 (699)
Q Consensus 232 ~~~~Y~G~rs~~~Iv~fi~k~ 252 (699)
++..|.|.++.++|++|-.+.
T Consensus 141 ~~~~~~~~r~l~sLv~fy~~i 161 (319)
T KOG2640|consen 141 CPASYRGERDLASLVNFYTEI 161 (319)
T ss_pred cchhhcccccHHHHHHHHHhh
Confidence 567999999999999999887
No 297
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.83 E-value=0.16 Score=50.16 Aligned_cols=52 Identities=23% Similarity=0.333 Sum_probs=44.4
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC----------ChHHHHHHHHHHHHHc
Q 005374 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI----------PSTADFLKIQYAYELL 87 (699)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~----------~~~~~f~~I~~Ay~vL 87 (699)
..+.|.+||+...++..+|+++|+++...+|||+-. ...+++++|++||+.+
T Consensus 112 ~~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 112 REDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred chhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 368999999999999999999999999999999522 2456789999999754
No 298
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=92.68 E-value=0.28 Score=56.76 Aligned_cols=83 Identities=13% Similarity=0.112 Sum_probs=63.7
Q ss_pred CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEEEcCCCCCCCC
Q 005374 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSD 231 (699)
Q Consensus 152 ~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~f~~g~~~~~ 231 (699)
+...-+-.|++|.|++|.+..-.++++|..- +.+..-.||+.+++. ++++|+ |.++|++++ ++.
T Consensus 116 ~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~-p~i~~~~id~~~~~~---~~~~~~------v~~VP~~~i--~~~---- 179 (515)
T TIGR03140 116 NGPLHFETYVSLTCQNCPDVVQALNQMALLN-PNISHTMIDGALFQD---EVEALG------IQGVPAVFL--NGE---- 179 (515)
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhC-CCceEEEEEchhCHH---HHHhcC------CcccCEEEE--CCc----
Confidence 3556688899999999998888888887664 345677788885555 899998 669999876 442
Q ss_pred ccccccCCcCHHHHHHHHHHH
Q 005374 232 CMTRFEGELSVDAVTDWFATA 252 (699)
Q Consensus 232 ~~~~Y~G~rs~~~Iv~fi~k~ 252 (699)
..|.|..+.+.+++.+.+.
T Consensus 180 --~~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 180 --EFHNGRMDLAELLEKLEET 198 (515)
T ss_pred --EEEecCCCHHHHHHHHhhc
Confidence 3578989999888877654
No 299
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=92.55 E-value=0.69 Score=49.96 Aligned_cols=95 Identities=17% Similarity=0.167 Sum_probs=56.2
Q ss_pred cccchhhhhhhhhcCCCcEEEEEEcC-CCCCchH---------HHHHHHHhc-cCCceEEEEEccccccHhHHhhcCCCC
Q 005374 262 YTKESMGKNFLAKTGPHKVKVIFFSK-TGERASP---------FVRQISRNY-WAYASFAFVLWREEESSIWWNTFEVES 330 (699)
Q Consensus 262 it~~~~~~~Fl~~~~~~~v~vl~f~~-~~~~~~~---------~~~~~A~~~-~~~~~Fg~V~~~~~~s~~l~~kf~V~~ 330 (699)
++..| +.+.+.+.. +.+|+|.. ..+.... .+..+|.-+ ...+.||.|.... ...+++++|+..
T Consensus 39 LneKN-fk~~lKkyd---~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~K--d~klAKKLgv~E 112 (383)
T PF01216_consen 39 LNEKN-FKRALKKYD---VLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKK--DAKLAKKLGVEE 112 (383)
T ss_dssp E-TTT-HHHHHHH-S---EEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTT--THHHHHHHT--S
T ss_pred cchhH-HHHHHHhhc---EEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHH--HHHHHHhcCccc
Confidence 44444 677676543 77776643 2211111 112233322 3457788776433 468999999999
Q ss_pred CCEEEEEcCCCCCceeecCCCChhHHHHHHHHhh
Q 005374 331 APAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNK 364 (699)
Q Consensus 331 ~PtIvlfk~~~~~pv~y~g~~~~~~L~~fi~~~~ 364 (699)
.++|++|+++. -+.|.|.++.+.|..||-.--
T Consensus 113 ~~SiyVfkd~~--~IEydG~~saDtLVeFl~dl~ 144 (383)
T PF01216_consen 113 EGSIYVFKDGE--VIEYDGERSADTLVEFLLDLL 144 (383)
T ss_dssp TTEEEEEETTE--EEEE-S--SHHHHHHHHHHHH
T ss_pred cCcEEEEECCc--EEEecCccCHHHHHHHHHHhc
Confidence 99999999753 567999999999999987543
No 300
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=92.29 E-value=0.089 Score=42.02 Aligned_cols=54 Identities=17% Similarity=0.192 Sum_probs=36.4
Q ss_pred EEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhh-hHHHHhCCCCcccccccccEEEE
Q 005374 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLA-THLAERKPIGQIFFRRGLPSLVA 222 (699)
Q Consensus 157 lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~-~~L~~k~~i~~~f~V~gyPTl~~ 222 (699)
++.|..+||++|++....+++. + +.+-.+|.+++... ..|.+..+ +.++|++.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~-----~-i~y~~~dv~~~~~~~~~l~~~~g------~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK-----G-IPYEEVDVDEDEEAREELKELSG------VRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----T-BEEEEEEGGGSHHHHHHHHHHHS------SSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc-----C-CeeeEcccccchhHHHHHHHHcC------CCccCEEEE
Confidence 4788999999998876555322 1 36788888865332 33444446 669999876
No 301
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=92.27 E-value=0.14 Score=44.40 Aligned_cols=80 Identities=8% Similarity=0.058 Sum_probs=48.4
Q ss_pred EEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchh-hhhHHHHhCCCCcccccccccEEEEcCCCCCCCCccc
Q 005374 156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-LATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMT 234 (699)
Q Consensus 156 ~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~-~~~~L~~k~~i~~~f~V~gyPTl~~f~~g~~~~~~~~ 234 (699)
+++.|..|||++|.+....++++.....+ +.+-.+|...+. ....+.+..+.. +.++|+|++ +|..
T Consensus 1 ~V~vys~~~Cp~C~~ak~~L~~~~~~~~~-i~~~~idi~~~~~~~~~l~~~~g~~----~~tVP~ifi--~g~~------ 67 (86)
T TIGR02183 1 FVVIFGRPGCPYCVRAKQLAEKLAIERAD-FEFRYIDIHAEGISKADLEKTVGKP----VETVPQIFV--DEKH------ 67 (86)
T ss_pred CEEEEeCCCCccHHHHHHHHHHhCcccCC-CcEEEEECCCCHHHHHHHHHHhCCC----CCCcCeEEE--CCEE------
Confidence 36789999999999887777666433222 356667766322 122255555421 458999853 4421
Q ss_pred cccCCcCHHHHHHHHHHH
Q 005374 235 RFEGELSVDAVTDWFATA 252 (699)
Q Consensus 235 ~Y~G~rs~~~Iv~fi~k~ 252 (699)
-| ..++|++|++++
T Consensus 68 --ig--G~~dl~~~~~~~ 81 (86)
T TIGR02183 68 --VG--GCTDFEQLVKEN 81 (86)
T ss_pred --ec--CHHHHHHHHHhc
Confidence 22 247888887765
No 302
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=92.19 E-value=0.7 Score=42.89 Aligned_cols=81 Identities=14% Similarity=0.238 Sum_probs=51.5
Q ss_pred CcEEEEEEcC----CCCCchHHHHHHHHhccCCceEEEEEccccc---------cHhHHhhcCCC----CCCEEEEEcCC
Q 005374 278 HKVKVIFFSK----TGERASPFVRQISRNYWAYASFAFVLWREEE---------SSIWWNTFEVE----SAPAIVFLKDP 340 (699)
Q Consensus 278 ~~v~vl~f~~----~~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~---------s~~l~~kf~V~----~~PtIvlfk~~ 340 (699)
+...+++|+. .|....|.+..++.+ ....|.+|.+.... -.++.++|++. +.||+++|+++
T Consensus 23 ~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~G 100 (122)
T TIGR01295 23 KETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDG 100 (122)
T ss_pred CCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCC
Confidence 3355666632 344567888888876 35678888765221 12566777654 49999999986
Q ss_pred CCCceeecC-CCChhHHHHHHH
Q 005374 341 GVKPVVYYG-SFNNSRLSEVME 361 (699)
Q Consensus 341 ~~~pv~y~g-~~~~~~L~~fi~ 361 (699)
.... ...| ..+.+.|.+|+.
T Consensus 101 k~v~-~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 101 KQVS-VRCGSSTTAQELQDIAA 121 (122)
T ss_pred eEEE-EEeCCCCCHHHHHHHhh
Confidence 4322 2445 456888888863
No 303
>PRK15000 peroxidase; Provisional
Probab=91.85 E-value=0.61 Score=47.12 Aligned_cols=99 Identities=8% Similarity=0.002 Sum_probs=60.7
Q ss_pred CCCcEEEEEec-cCCCCCCCcchHHHHHHHHhhccc-ceeeeeccchhhhhHHHH----hCC---------------CCc
Q 005374 152 DSKPWLIQVYS-DGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLATHLAE----RKP---------------IGQ 210 (699)
Q Consensus 152 ~~~~~lV~FYa-pwC~hCk~l~p~~~~~A~~L~g~~-~va~Vdc~~~~~~~~L~~----k~~---------------i~~ 210 (699)
.++++++.||+ .||+.|..-.+.+.+.+++++... .|..|.++....+...++ +.+ +.+
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 36788999999 599999999999999999997543 677777773221111111 111 111
Q ss_pred ccccc------cccEEEEcCCCCCCCCccc-cc--cCCcCHHHHHHHHHHH
Q 005374 211 IFFRR------GLPSLVAFPPGCKSSDCMT-RF--EGELSVDAVTDWFATA 252 (699)
Q Consensus 211 ~f~V~------gyPTl~~f~~g~~~~~~~~-~Y--~G~rs~~~Iv~fi~k~ 252 (699)
.|.|. .+|+.+++-+.+.. ... .+ .-.|+.+.++..+...
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I--~~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIV--RHQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEE--EEEEecCCCCCCCHHHHHHHHHHh
Confidence 23354 57887777643322 111 11 2357888888887543
No 304
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=91.66 E-value=0.89 Score=42.18 Aligned_cols=50 Identities=16% Similarity=0.262 Sum_probs=39.7
Q ss_pred CchHHHHHHHHhccCCceEEEEEcccc-----ccHhHHhhcCCC-CCCEEEEEcCC
Q 005374 291 RASPFVRQISRNYWAYASFAFVLWREE-----ESSIWWNTFEVE-SAPAIVFLKDP 340 (699)
Q Consensus 291 ~~~~~~~~~A~~~~~~~~Fg~V~~~~~-----~s~~l~~kf~V~-~~PtIvlfk~~ 340 (699)
...|.+..++.++.+.+.|..|.+... .+.+++.+|+|. +.||+++|+.+
T Consensus 45 ~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~ 100 (119)
T cd02952 45 KAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTP 100 (119)
T ss_pred hhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCC
Confidence 346788888888887789999986542 136799999998 99999999754
No 305
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=91.58 E-value=0.2 Score=42.60 Aligned_cols=57 Identities=14% Similarity=0.201 Sum_probs=38.0
Q ss_pred CcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEEE
Q 005374 154 KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA 222 (699)
Q Consensus 154 ~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~ 222 (699)
+.-++.|..+||++|.+..-.+++. | +.+-.+|++++.....+.+..+ ...+|+|.+
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~-----g-i~y~~idi~~~~~~~~~~~~~g------~~~vP~i~i 63 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK-----G-YDFEEIPLGNDARGRSLRAVTG------ATTVPQVFI 63 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc-----C-CCcEEEECCCChHHHHHHHHHC------CCCcCeEEE
Confidence 3447789999999998877666432 2 3556678775544344555555 559999854
No 306
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=91.45 E-value=0.26 Score=48.09 Aligned_cols=68 Identities=15% Similarity=0.165 Sum_probs=42.0
Q ss_pred cCCCcEEEEEeccCCCCCCCcch-HH--HHHHHHhhcccceeeeeccchhhhhHHHHhC--------CCCcccccccccE
Q 005374 151 HDSKPWLIQVYSDGSYLCGQFSG-AW--KTIAALLEGIANTGMVELGDIRLATHLAERK--------PIGQIFFRRGLPS 219 (699)
Q Consensus 151 ~~~~~~lV~FYapwC~hCk~l~p-~~--~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~--------~i~~~f~V~gyPT 219 (699)
..++++||.++.+||.-|+.++- .| .++|+.|.....-.+||-++.+. +...| + ..|+|+
T Consensus 35 ~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pd---id~~y~~~~~~~~~------~gGwPl 105 (163)
T PF03190_consen 35 KENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPD---IDKIYMNAVQAMSG------SGGWPL 105 (163)
T ss_dssp HHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HH---HHHHHHHHHHHHHS---------SSE
T ss_pred hcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCcc---HHHHHHHHHHHhcC------CCCCCc
Confidence 47899999999999999998874 44 45677776655566788776555 44443 4 339999
Q ss_pred EEEcCCCC
Q 005374 220 LVAFPPGC 227 (699)
Q Consensus 220 l~~f~~g~ 227 (699)
.++..+..
T Consensus 106 ~vfltPdg 113 (163)
T PF03190_consen 106 TVFLTPDG 113 (163)
T ss_dssp EEEE-TTS
T ss_pred eEEECCCC
Confidence 88876543
No 307
>PRK13190 putative peroxiredoxin; Provisional
Probab=91.04 E-value=0.74 Score=46.52 Aligned_cols=100 Identities=11% Similarity=-0.043 Sum_probs=59.0
Q ss_pred CCcE-EEEEeccCCCCCCCcchHHHHHHHHhhccc-ceeeeeccchhh------------------------hhHHHHhC
Q 005374 153 SKPW-LIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRL------------------------ATHLAERK 206 (699)
Q Consensus 153 ~~~~-lV~FYapwC~hCk~l~p~~~~~A~~L~g~~-~va~Vdc~~~~~------------------------~~~L~~k~ 206 (699)
++.+ |+.|.+.||+.|..-.+.+.++..+++... .|..|.++.... ...+++.|
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~y 106 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREY 106 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHc
Confidence 4433 446789999999999999999999987543 566666653211 01244445
Q ss_pred CCCcccccccccEEEEcCCCCCC-CCccccccCCcCHHHHHHHHHHH
Q 005374 207 PIGQIFFRRGLPSLVAFPPGCKS-SDCMTRFEGELSVDAVTDWFATA 252 (699)
Q Consensus 207 ~i~~~f~V~gyPTl~~f~~g~~~-~~~~~~Y~G~rs~~~Iv~fi~k~ 252 (699)
++-..=.-..+|+.+++-+.+.. ........+.|+.++|+..+...
T Consensus 107 gv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l 153 (202)
T PRK13190 107 NLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKAL 153 (202)
T ss_pred CCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 42100000147888888644332 00011124568999998888654
No 308
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=90.98 E-value=0.93 Score=45.59 Aligned_cols=100 Identities=10% Similarity=0.022 Sum_probs=59.8
Q ss_pred CCCcEEEEEec-cCCCCCCCcchHHHHHHHHhhccc-ceeeeeccchhh-------------------------hhHHHH
Q 005374 152 DSKPWLIQVYS-DGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRL-------------------------ATHLAE 204 (699)
Q Consensus 152 ~~~~~lV~FYa-pwC~hCk~l~p~~~~~A~~L~g~~-~va~Vdc~~~~~-------------------------~~~L~~ 204 (699)
.+++.+|.||+ .||.+|..-.+.+.+++++++... .|-.|+++.... ...+++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 35678888995 789999998899999999997644 677777773221 123555
Q ss_pred hCCCCcccccccccEEEEcCCCCCCCCccccc--cCCcCHHHHHHHHHHH
Q 005374 205 RKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF--EGELSVDAVTDWFATA 252 (699)
Q Consensus 205 k~~i~~~f~V~gyPTl~~f~~g~~~~~~~~~Y--~G~rs~~~Iv~fi~k~ 252 (699)
.|++...-.-..+|+.+++-+..... ....+ .-.|+.+++++.+...
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~-~~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLR-QITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEE-EEEecCCCCCCCHHHHHHHHHhh
Confidence 56531000000368877776443210 00011 2447777887777543
No 309
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=90.97 E-value=2.5 Score=38.28 Aligned_cols=117 Identities=14% Similarity=0.262 Sum_probs=67.2
Q ss_pred ccccccchhhhhhccCcCCCCCCCCCccceEEEEEec-cCChhHHHHHHHHHHHHHhhccCcccccccccccchhHHHhc
Q 005374 377 ELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAG-RLSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAF 455 (699)
Q Consensus 377 ~vp~Lts~s~~~~~c~~~~~~~~~~~~~~~lCvI~~~-~~~~~~~~~~~~lr~~a~~l~~~~~~~~~~~~~~~~~~a~~~ 455 (699)
++-+|+..++++.=-+. . -.+.++++. ..+++--++.+.++++|+ .+
T Consensus 2 tlrkl~~~~m~e~wedd---------~-~g~~IvAFaee~dpdG~eFl~ilk~vA~----------------------~n 49 (120)
T cd03074 2 TLRKLKPENMFETWEDD---------L-DGIHIVAFAEEEDPDGYEFLEILKEVAR----------------------DN 49 (120)
T ss_pred chhhccHHHHHHhhhcc---------c-CCceEEEEeccCCccHHHHHHHHHHHHH----------------------hc
Confidence 34456666666643221 0 034555554 344555677888888888 44
Q ss_pred CC-CeEEEEEEeCcchHHHHHHhccccccccccCCcCCCCCCCeEEEEEeecCCccccceeeccccccccccccccCCcc
Q 005374 456 RN-KRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPA 534 (699)
Q Consensus 456 k~-~~l~F~wvd~~~q~~f~~~fl~~~~~~~~c~~~~~~~~~p~lvI~~~rr~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 534 (699)
+. ..++|+|||-+..+-...+.-+.-.. +. ..|.|=|+ |.+.. .- .| ++..++++.
T Consensus 50 t~np~LsiIWIDPD~FPllv~yWektF~I--------Dl-~~PqIGVV----~vtda--dS---vW--~~m~~~~d~--- 106 (120)
T cd03074 50 TDNPDLSIIWIDPDDFPLLVPYWEKTFGI--------DL-FRPQIGVV----NVTDA--DS---VW--MEMDDDEDL--- 106 (120)
T ss_pred CcCCCceEEEECCccCchhhHHHHhhcCc--------cc-CCCceeeE----ecccc--cc---ee--Eeccccccc---
Confidence 43 46999999998766655555332222 22 24889888 77542 11 15 311111111
Q ss_pred ccchhccCCCCChHHHHHHHHHHh
Q 005374 535 SQLVVRYNGSDEIPQIAKWVSEII 558 (699)
Q Consensus 535 ~~~~~~~~g~~~~~~i~~~i~~~~ 558 (699)
-+.++++.||+.+|
T Consensus 107 ----------~t~~~Le~WiedVL 120 (120)
T cd03074 107 ----------PTAEELEDWIEDVL 120 (120)
T ss_pred ----------CcHHHHHHHHHhhC
Confidence 15689999999875
No 310
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=90.90 E-value=0.23 Score=46.68 Aligned_cols=31 Identities=3% Similarity=0.144 Sum_probs=26.6
Q ss_pred CCCcEEEEEeccCCCCCCCcchHHHHHHHHh
Q 005374 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALL 182 (699)
Q Consensus 152 ~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L 182 (699)
+.++.+++|+.++|+||.++.|.+.++...+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~ 34 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKED 34 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHC
Confidence 4568899999999999999999998876654
No 311
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=90.50 E-value=0.92 Score=40.48 Aligned_cols=92 Identities=9% Similarity=0.060 Sum_probs=64.4
Q ss_pred cCCCCccccc-CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEE
Q 005374 142 TSEDFPSIFH-DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL 220 (699)
Q Consensus 142 t~~nF~~~v~-~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl 220 (699)
+.+..+.++. ++.+.+|-|+..--+ .....|.++|..+.....++...-. . ++..++ + ..|++
T Consensus 7 ~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~~---~---~~~~~~------~-~~~~i 70 (102)
T cd03066 7 SERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATFDS---K---VAKKLG------L-KMNEV 70 (102)
T ss_pred CHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEECcH---H---HHHHcC------C-CCCcE
Confidence 3344666777 778888877766433 4556899999999766677655533 2 556665 3 57999
Q ss_pred EEcCCCCCCCCccccc-cCCcCHHHHHHHHHHH
Q 005374 221 VAFPPGCKSSDCMTRF-EGELSVDAVTDWFATA 252 (699)
Q Consensus 221 ~~f~~g~~~~~~~~~Y-~G~rs~~~Iv~fi~k~ 252 (699)
+++++... ....| .|..+.+.|.+|+...
T Consensus 71 ~l~~~~~e---~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 71 DFYEPFME---EPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred EEeCCCCC---CCcccCCCCCCHHHHHHHHHHh
Confidence 99987322 24568 8889999999999753
No 312
>PRK10329 glutaredoxin-like protein; Provisional
Probab=89.99 E-value=0.35 Score=41.57 Aligned_cols=74 Identities=14% Similarity=0.182 Sum_probs=47.8
Q ss_pred EEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEEEcCCCCCCCCccccc
Q 005374 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF 236 (699)
Q Consensus 157 lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~f~~g~~~~~~~~~Y 236 (699)
++.|..+||++|++..-.+++ .| +.+-.+|.++++......+..| ...+|++++ ++..
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~g-I~~~~idi~~~~~~~~~~~~~g------~~~vPvv~i--~~~~-------- 60 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----RG-FDFEMINVDRVPEAAETLRAQG------FRQLPVVIA--GDLS-------- 60 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----CC-CceEEEECCCCHHHHHHHHHcC------CCCcCEEEE--CCEE--------
Confidence 567888999999887655533 12 3677888886655444444445 559999865 2311
Q ss_pred cCCcCHHHHHHHHHHH
Q 005374 237 EGELSVDAVTDWFATA 252 (699)
Q Consensus 237 ~G~rs~~~Iv~fi~k~ 252 (699)
-+....+.|.+.+...
T Consensus 61 ~~Gf~~~~l~~~~~~~ 76 (81)
T PRK10329 61 WSGFRPDMINRLHPAP 76 (81)
T ss_pred EecCCHHHHHHHHHhh
Confidence 2456677887777554
No 313
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=89.80 E-value=0.12 Score=48.63 Aligned_cols=68 Identities=9% Similarity=0.034 Sum_probs=39.1
Q ss_pred CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEEEcCCC
Q 005374 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (699)
Q Consensus 152 ~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~f~~g 226 (699)
....-++-|..+|||.|.+.-|.+.++|+... .+.+--+--+++.. +-.++-. .+.+..||++++..+
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~~e---l~~~~lt---~g~~~IP~~I~~d~~ 107 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDENKE---LMDQYLT---NGGRSIPTFIFLDKD 107 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHHHH---HTTTTTT----SS--SSEEEEE-TT
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCChh---HHHHHHh---CCCeecCEEEEEcCC
Confidence 34456667889999999999999999999753 33444444443333 4444421 226799999999654
No 314
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.73 E-value=0.79 Score=44.16 Aligned_cols=88 Identities=19% Similarity=0.297 Sum_probs=55.6
Q ss_pred cccCCCcEEEEEeccCCCCCCCcchHHH---HHHHHhhcccceeeeecc-------------chhhhhHHHHhCCCCccc
Q 005374 149 IFHDSKPWLIQVYSDGSYLCGQFSGAWK---TIAALLEGIANTGMVELG-------------DIRLATHLAERKPIGQIF 212 (699)
Q Consensus 149 ~v~~~~~~lV~FYapwC~hCk~l~p~~~---~~A~~L~g~~~va~Vdc~-------------~~~~~~~L~~k~~i~~~f 212 (699)
+...++..|++|=++.|..|.++..... ++-+-|.+...+..+|.+ +.-...+||++++
T Consensus 38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~----- 112 (182)
T COG2143 38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFA----- 112 (182)
T ss_pred cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhc-----
Confidence 3357889999999999999998876443 233344443333344432 1112346999998
Q ss_pred ccccccEEEEcCCCCCCCCccccccCCcCHHHH
Q 005374 213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAV 245 (699)
Q Consensus 213 ~V~gyPTl~~f~~g~~~~~~~~~Y~G~rs~~~I 245 (699)
|++.||+++|...+.. .-.-.|-...++.
T Consensus 113 -vrstPtfvFfdk~Gk~---Il~lPGY~ppe~F 141 (182)
T COG2143 113 -VRSTPTFVFFDKTGKT---ILELPGYMPPEQF 141 (182)
T ss_pred -cccCceEEEEcCCCCE---EEecCCCCCHHHH
Confidence 7799999999765332 1222465555554
No 315
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=89.61 E-value=0.36 Score=46.85 Aligned_cols=38 Identities=21% Similarity=0.244 Sum_probs=32.1
Q ss_pred CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhccccee
Q 005374 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTG 189 (699)
Q Consensus 152 ~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va 189 (699)
+.++.+++|+.+.|+||+++.+...++.+++.+.+.+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFE 51 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEE
Confidence 67889999999999999999999999988875544443
No 316
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=89.34 E-value=0.84 Score=40.96 Aligned_cols=91 Identities=16% Similarity=0.258 Sum_probs=61.3
Q ss_pred CCcccccCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEEEcC
Q 005374 145 DFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFP 224 (699)
Q Consensus 145 nF~~~v~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~f~ 224 (699)
+.+..+...++.+|-|+..--+ .....|.++|..+.....++...-. . ++++++ + .|++++|+
T Consensus 10 ~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~~---~---~~~~~~------~--~~~ivl~~ 72 (104)
T cd03069 10 EFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTSDK---Q---LLEKYG------Y--GEGVVLFR 72 (104)
T ss_pred HHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEChH---H---HHHhcC------C--CCceEEEe
Confidence 3445566677888877766433 4567899999999666677665533 2 566665 5 68899995
Q ss_pred CCC---CCCCccccccCCcCHHHHHHHHHHH
Q 005374 225 PGC---KSSDCMTRFEGELSVDAVTDWFATA 252 (699)
Q Consensus 225 ~g~---~~~~~~~~Y~G~rs~~~Iv~fi~k~ 252 (699)
+.. +.-.....|.|..+.+.|.+|+...
T Consensus 73 p~~~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 73 PPRLSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred chhhhcccCcccccccCcCCHHHHHHHHHhh
Confidence 421 0001235699999999999999754
No 317
>PRK13599 putative peroxiredoxin; Provisional
Probab=89.31 E-value=0.95 Score=46.31 Aligned_cols=96 Identities=7% Similarity=-0.053 Sum_probs=59.8
Q ss_pred cEEEEEeccCCCCCCCcchHHHHHHHHhhccc-ceeeeeccchhhh------------------------hHHHHhCCCC
Q 005374 155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLA------------------------THLAERKPIG 209 (699)
Q Consensus 155 ~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~-~va~Vdc~~~~~~------------------------~~L~~k~~i~ 209 (699)
.+|+.|.+.||+.|..-.+.+.+++.+++... .|..|.++....+ ..+++.||+.
T Consensus 31 vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~ 110 (215)
T PRK13599 31 FVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMI 110 (215)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCC
Confidence 35678889999999999999999999997543 6777777743211 1244445531
Q ss_pred ccc-ccccccEEEEcCCCCCCCCccc-cc--cCCcCHHHHHHHHHHH
Q 005374 210 QIF-FRRGLPSLVAFPPGCKSSDCMT-RF--EGELSVDAVTDWFATA 252 (699)
Q Consensus 210 ~~f-~V~gyPTl~~f~~g~~~~~~~~-~Y--~G~rs~~~Iv~fi~k~ 252 (699)
.+- .....|+.+++-+.+.. ... .| ...|+.+.|++.+...
T Consensus 111 ~~~~~~~~~R~tfIID~dG~I--r~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 111 HPGKGTNTVRAVFIVDDKGTI--RLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred ccCCCCceeeEEEEECCCCEE--EEEEEcCCCCCCCHHHHHHHHHHh
Confidence 000 01357888888643332 112 12 2347888888887643
No 318
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=89.22 E-value=0.67 Score=52.63 Aligned_cols=45 Identities=18% Similarity=0.156 Sum_probs=33.3
Q ss_pred ccCcCCCCCHHHHHHHHHHHHHhcCCCCCCC--h--------HHHHHHHHHHHHH
Q 005374 42 ALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP--S--------TADFLKIQYAYEL 86 (699)
Q Consensus 42 vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~--~--------~~~f~~I~~Ay~v 86 (699)
=+++..=.+.++||++|||.++..||||-++ + ++.|..+++||+.
T Consensus 393 pVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~ 447 (453)
T KOG0431|consen 393 PVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNK 447 (453)
T ss_pred cCchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 3467777899999999999999999998652 2 2335555666654
No 319
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=89.20 E-value=0.59 Score=41.76 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=28.8
Q ss_pred HhHHhhcCCCCCCEEEEEcCCCCCceeecCCCChhHHHHHH
Q 005374 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM 360 (699)
Q Consensus 320 ~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~~~~~~L~~fi 360 (699)
..+.+.|+|.+.||++++...++....+.|..+.+.|.+++
T Consensus 72 ~~l~~~~~v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 72 KELAQRYGVNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp HHHHHHTT--SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred HHHHHHcCCCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 45899999999999999975555444568988888887764
No 320
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=89.18 E-value=1.4 Score=44.52 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=33.5
Q ss_pred cEEEEEeccCCCCCCCcchHHHHHHHHhhccc-ceeeeeccc
Q 005374 155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGD 195 (699)
Q Consensus 155 ~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~-~va~Vdc~~ 195 (699)
++|+.|.+.||+.|..-.+.+.+++++++... .|..|+++.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~ 69 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDS 69 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 45567889999999999999999999997653 677777764
No 321
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=89.07 E-value=1 Score=47.59 Aligned_cols=71 Identities=13% Similarity=0.132 Sum_probs=45.5
Q ss_pred chHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCCCce-e----e-cCCCChhHHHHHHHHhhc
Q 005374 292 ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPV-V----Y-YGSFNNSRLSEVMEQNKL 365 (699)
Q Consensus 292 ~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~~pv-~----y-~g~~~~~~L~~fi~~~~~ 365 (699)
....+..+|..|. .++|..|....+. +..+|.+...|||++|+++..... + . ..+++..+|..|+.++..
T Consensus 164 mn~~L~~LA~kyp-~vKFvkI~a~~~~---~~~~f~~~~LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G~ 239 (265)
T PF02114_consen 164 MNSCLECLARKYP-EVKFVKIRASKCP---ASENFPDKNLPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYGV 239 (265)
T ss_dssp HHHHHHHHHHH-T-TSEEEEEEECGCC---TTTTS-TTC-SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTTS
T ss_pred HHHHHHHHHHhCC-ceEEEEEehhccC---cccCCcccCCCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcCC
Confidence 3445566888885 6899998754432 678899989999999997542211 1 1 224677889999988865
Q ss_pred c
Q 005374 366 Q 366 (699)
Q Consensus 366 ~ 366 (699)
.
T Consensus 240 l 240 (265)
T PF02114_consen 240 L 240 (265)
T ss_dssp S
T ss_pred C
Confidence 5
No 322
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=88.76 E-value=0.64 Score=43.14 Aligned_cols=72 Identities=13% Similarity=0.130 Sum_probs=59.0
Q ss_pred cccc--cCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEEEcC
Q 005374 147 PSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFP 224 (699)
Q Consensus 147 ~~~v--~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~f~ 224 (699)
+.+| .+.+.++|-|--+|.+-|.++-....++|+.+...+.|.-||.++-+. +-+-++ +...||+++|-
T Consensus 15 dqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~---~~~~~~------l~~p~tvmfFf 85 (142)
T KOG3414|consen 15 DQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPD---FVKMYE------LYDPPTVMFFF 85 (142)
T ss_pred HHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhh---hhhhhc------ccCCceEEEEE
Confidence 3445 367889999999999999999999999999999988999999984433 555555 66999999987
Q ss_pred CCC
Q 005374 225 PGC 227 (699)
Q Consensus 225 ~g~ 227 (699)
++.
T Consensus 86 n~k 88 (142)
T KOG3414|consen 86 NNK 88 (142)
T ss_pred cCc
Confidence 764
No 323
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=88.26 E-value=4 Score=36.94 Aligned_cols=87 Identities=13% Similarity=0.164 Sum_probs=50.8
Q ss_pred CCcEEEEEEcC-CCCCchHHHHH------HHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEEcC-CCCCceeec
Q 005374 277 PHKVKVIFFSK-TGERASPFVRQ------ISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKD-PGVKPVVYY 348 (699)
Q Consensus 277 ~~~v~vl~f~~-~~~~~~~~~~~------~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~-~~~~pv~y~ 348 (699)
.+++.+|++.. .+.....+.+. +...+.+..-+..+...+.+...++..|++.++|+++++.. .+..-....
T Consensus 16 ~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~ 95 (114)
T cd02958 16 EKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWS 95 (114)
T ss_pred hCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEEc
Confidence 46777777753 22111121111 33333333333344433333467999999999999999987 444333458
Q ss_pred CCCChhHHHHHHHHh
Q 005374 349 GSFNNSRLSEVMEQN 363 (699)
Q Consensus 349 g~~~~~~L~~fi~~~ 363 (699)
|..+.+.+...+++.
T Consensus 96 G~~~~~~f~~~L~~~ 110 (114)
T cd02958 96 GNITPEDLLSQLIEF 110 (114)
T ss_pred CCCCHHHHHHHHHHH
Confidence 888888777666543
No 324
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=87.80 E-value=0.24 Score=49.00 Aligned_cols=60 Identities=17% Similarity=0.312 Sum_probs=45.9
Q ss_pred cccccCcCCCC--CHHHHHHHHHHHHHhcCCCCCCC--h------HHHHHHHHHHHHHcCChhhhcccCc
Q 005374 39 HYDALGIKPYS--SVEQVKEAYEKFSSKWNSGEEIP--S------TADFLKIQYAYELLTDPLWKRNYDV 98 (699)
Q Consensus 39 ~Y~vLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~--~------~~~f~~I~~Ay~vL~d~~~R~~YD~ 98 (699)
++..+|..+.+ ..+.++..|+.+.+.+|||+... . -+.+..++.||.+|.+|-.|+.|=.
T Consensus 3 ~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l 72 (174)
T COG1076 3 GFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL 72 (174)
T ss_pred cccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 44445555443 35778999999999999997542 1 2458899999999999999998864
No 325
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=87.73 E-value=2 Score=50.38 Aligned_cols=64 Identities=13% Similarity=0.173 Sum_probs=46.2
Q ss_pred HHHhccCCceEEEEEcccc--ccHhHHhhcCCCCCCEEEEEcCCCCC--ceeecCCCChhHHHHHHHHh
Q 005374 299 ISRNYWAYASFAFVLWREE--ESSIWWNTFEVESAPAIVFLKDPGVK--PVVYYGSFNNSRLSEVMEQN 363 (699)
Q Consensus 299 ~A~~~~~~~~Fg~V~~~~~--~s~~l~~kf~V~~~PtIvlfk~~~~~--pv~y~g~~~~~~L~~fi~~~ 363 (699)
+...+. .+.+..+++.+. +..++.++|++.+.|++++|+.+++. ...+.|..+.+++.+++++.
T Consensus 502 v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 502 VQQALA-DTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred HHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 334443 467777776543 23679999999999999999865544 23457888999999888764
No 326
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=87.45 E-value=2.7 Score=44.56 Aligned_cols=72 Identities=10% Similarity=0.132 Sum_probs=49.2
Q ss_pred CCCchHHHHHHHHhccCCceEEEEEccccc---------cHhHHhhcCCCCCCEEEEEcCCCCCc-eeecCCCChhHHHH
Q 005374 289 GERASPFVRQISRNYWAYASFAFVLWREEE---------SSIWWNTFEVESAPAIVFLKDPGVKP-VVYYGSFNNSRLSE 358 (699)
Q Consensus 289 ~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~---------s~~l~~kf~V~~~PtIvlfk~~~~~p-v~y~g~~~~~~L~~ 358 (699)
|....|.+..++.+|. +.+..|...... ...++++|||...|+++++++++... .+..|.++.+.|.+
T Consensus 181 C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~~v~~G~~s~~eL~~ 258 (271)
T TIGR02740 181 CHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQFTPIGFGVMSADELVD 258 (271)
T ss_pred HHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEEEEEEeCCCCHHHHHH
Confidence 3445688888888774 555555543211 24688999999999999998744332 23468888888887
Q ss_pred HHHH
Q 005374 359 VMEQ 362 (699)
Q Consensus 359 fi~~ 362 (699)
.|..
T Consensus 259 ~i~~ 262 (271)
T TIGR02740 259 RILL 262 (271)
T ss_pred HHHH
Confidence 7654
No 327
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=87.44 E-value=2.4 Score=38.06 Aligned_cols=91 Identities=13% Similarity=0.214 Sum_probs=58.4
Q ss_pred hhhhhhhcCCCcEEEEEEcCCCCC--chHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCC----CCCE-EEEEcCC
Q 005374 268 GKNFLAKTGPHKVKVIFFSKTGER--ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVE----SAPA-IVFLKDP 340 (699)
Q Consensus 268 ~~~Fl~~~~~~~v~vl~f~~~~~~--~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~----~~Pt-Ivlfk~~ 340 (699)
+...+.. .+.|.++|..+..+. ....+..+|...++.-...+|.-++.+...||++++|. ..|. |.-|+++
T Consensus 12 fKKLLRT--r~NVLvLy~ks~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkHYKdG 89 (112)
T cd03067 12 FKKLLRT--RNNVLVLYSKSAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKHYKDG 89 (112)
T ss_pred HHHHHhh--cCcEEEEEecchhhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhcccCC
Confidence 4444443 456777776543221 22333557888888777777776666668899999998 4453 4467765
Q ss_pred CCCceeecCCCChhHHHHHHH
Q 005374 341 GVKPVVYYGSFNNSRLSEVME 361 (699)
Q Consensus 341 ~~~pv~y~g~~~~~~L~~fi~ 361 (699)
+- .-.|+..++...|.+|++
T Consensus 90 ~f-HkdYdR~~t~kSmv~Flr 109 (112)
T cd03067 90 DF-HTEYNRQLTFKSMVAFLR 109 (112)
T ss_pred Cc-cccccchhhHHHHHHHhh
Confidence 42 234676677788888875
No 328
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=87.34 E-value=18 Score=41.86 Aligned_cols=173 Identities=11% Similarity=0.031 Sum_probs=93.1
Q ss_pred CCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEEEcCCCCCCCCc
Q 005374 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDC 232 (699)
Q Consensus 153 ~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~f~~g~~~~~~ 232 (699)
+.+.|+.| .+.|..|..+....+++++.- +.+.+ ..... . ...|++.+..+|.. .
T Consensus 19 ~~v~~~~~-~~~~~~~~~~~~~~~~~~~~s-~~i~~-----~~~~~----~-----------~~~p~~~~~~~~~~---~ 73 (517)
T PRK15317 19 RPIELVAS-LDDSEKSAELKELLEEIASLS-DKITV-----EEDSL----D-----------VRKPSFSITRPGED---T 73 (517)
T ss_pred CCEEEEEE-eCCCchHHHHHHHHHHHHHhC-CceEE-----EEccC----C-----------CCCCEEEEEcCCcc---c
Confidence 33444444 447999988777666666543 22222 21100 0 14799999876643 3
Q ss_pred cccccCCcCHHHHHHHHHHHhc-cCCcceecccchhhhhhhhhcCCCcEEE-EEEcCCCC-Cch--HHHHHHHHhccCCc
Q 005374 233 MTRFEGELSVDAVTDWFATAIL-KLPRIFYYTKESMGKNFLAKTGPHKVKV-IFFSKTGE-RAS--PFVRQISRNYWAYA 307 (699)
Q Consensus 233 ~~~Y~G~rs~~~Iv~fi~k~v~-~lP~~~~it~~~~~~~Fl~~~~~~~v~v-l~f~~~~~-~~~--~~~~~~A~~~~~~~ 307 (699)
...|.|--.=..+-.|+...+. +.|... + +++ ..+.+.... ..+.+ +|.+.+|. |+. ..+..+|.. ...+
T Consensus 74 ~i~f~g~P~g~Ef~s~i~~i~~~~~~~~~-l-~~~-~~~~i~~~~-~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~-~~~i 148 (517)
T PRK15317 74 GVRFAGIPMGHEFTSLVLALLQVGGHPPK-L-DQE-VIEQIKALD-GDFHFETYVSLSCHNCPDVVQALNLMAVL-NPNI 148 (517)
T ss_pred eEEEEecCccHHHHHHHHHHHHhcCCCCC-C-CHH-HHHHHHhcC-CCeEEEEEEcCCCCCcHHHHHHHHHHHHh-CCCc
Confidence 5788876666666666654321 223222 2 222 233343321 22333 34444443 222 222224432 3456
Q ss_pred eEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCCCceeecCCCChhHHHHHHHH
Q 005374 308 SFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (699)
Q Consensus 308 ~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~~~~~~L~~fi~~ 362 (699)
.+-.+. ..+.++++++|++.+.|++++ +++ ..+.|..+.+.|.+.+..
T Consensus 149 ~~~~id--~~~~~~~~~~~~v~~VP~~~i---~~~--~~~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 149 THTMID--GALFQDEVEARNIMAVPTVFL---NGE--EFGQGRMTLEEILAKLDT 196 (517)
T ss_pred eEEEEE--chhCHhHHHhcCCcccCEEEE---CCc--EEEecCCCHHHHHHHHhc
Confidence 655553 223488999999999999976 222 347787777777666654
No 329
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=87.11 E-value=1.8 Score=39.41 Aligned_cols=71 Identities=25% Similarity=0.332 Sum_probs=47.5
Q ss_pred hhhhhhhhhcCCCcEEEEEEcCCC----CCc--hHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEEcC
Q 005374 266 SMGKNFLAKTGPHKVKVIFFSKTG----ERA--SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKD 339 (699)
Q Consensus 266 ~~~~~Fl~~~~~~~v~vl~f~~~~----~~~--~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~ 339 (699)
+.++.|+...+ ..|+||.... +.. ...+=.+.+.|......+.|. ......|..+||+...|++++|++
T Consensus 17 ~~ld~~l~~~~---~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~--~~~e~~L~~r~gv~~~PaLvf~R~ 91 (107)
T PF07449_consen 17 DTLDAFLAAPG---DAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVA--RAAERALAARFGVRRWPALVFFRD 91 (107)
T ss_dssp CCHHHHHHCCS---CEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEE--HHHHHHHHHHHT-TSSSEEEEEET
T ss_pred hhHHHHHhCCC---cEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEEC--chhHHHHHHHhCCccCCeEEEEEC
Confidence 33788988644 5677775432 222 234444777788887777665 223478999999999999999998
Q ss_pred CC
Q 005374 340 PG 341 (699)
Q Consensus 340 ~~ 341 (699)
+.
T Consensus 92 g~ 93 (107)
T PF07449_consen 92 GR 93 (107)
T ss_dssp TE
T ss_pred CE
Confidence 54
No 330
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=86.31 E-value=3.2 Score=40.06 Aligned_cols=44 Identities=18% Similarity=0.297 Sum_probs=35.0
Q ss_pred HhHHhhcCCCCCCEEEEEcCCCCCceeecCCCChhHHHHHHHHh
Q 005374 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN 363 (699)
Q Consensus 320 ~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~~~~~~L~~fi~~~ 363 (699)
..+.+.|++...|+++++.+++.-...+.|..+.+.+.++++.-
T Consensus 128 ~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 128 RQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred chHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 56889999999999999977664433568888888898888754
No 331
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=86.22 E-value=0.78 Score=37.93 Aligned_cols=69 Identities=19% Similarity=0.273 Sum_probs=41.8
Q ss_pred EEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEEEcCCCCCCCCccccc
Q 005374 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF 236 (699)
Q Consensus 157 lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~f~~g~~~~~~~~~Y 236 (699)
++.|..+||+.|.+..-.+++. + +.+-.+|.+++.....+....| ...+|.| |.+|..
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-----~-i~~~~~~v~~~~~~~~~~~~~g------~~~vP~i--fi~g~~-------- 60 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-----G-ISYEEIPLGKDITGRSLRAVTG------AMTVPQV--FIDGEL-------- 60 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----C-CCcEEEECCCChhHHHHHHHhC------CCCcCeE--EECCEE--------
Confidence 5788899999998876544431 1 3566777765543333434445 5589997 444521
Q ss_pred cCCcCHHHHHHHH
Q 005374 237 EGELSVDAVTDWF 249 (699)
Q Consensus 237 ~G~rs~~~Iv~fi 249 (699)
-| ..+.|.+|+
T Consensus 61 ig--g~~~l~~~l 71 (72)
T cd03029 61 IG--GSDDLEKYF 71 (72)
T ss_pred Ee--CHHHHHHHh
Confidence 23 256777765
No 332
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=85.92 E-value=0.84 Score=37.87 Aligned_cols=53 Identities=13% Similarity=0.100 Sum_probs=34.9
Q ss_pred EEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEEE
Q 005374 158 IQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA 222 (699)
Q Consensus 158 V~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~ 222 (699)
+.|..++|++|.+....+++. -+.+-.+|.++++.......+.| ..++|++++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~------~i~~~~~di~~~~~~~~~~~~~g------~~~vP~v~~ 54 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH------GIAFEEINIDEQPEAIDYVKAQG------FRQVPVIVA 54 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHcC------CcccCEEEE
Confidence 467789999998877655431 23677788886654333333445 558999765
No 333
>PRK13189 peroxiredoxin; Provisional
Probab=85.83 E-value=2.4 Score=43.58 Aligned_cols=41 Identities=10% Similarity=-0.028 Sum_probs=31.8
Q ss_pred cEEEEEeccCCCCCCCcchHHHHHHHHhhccc-ceeeeeccc
Q 005374 155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGD 195 (699)
Q Consensus 155 ~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~-~va~Vdc~~ 195 (699)
++|+.|.+.||+.|..-.+.+.+.+.+++... .|..|.++.
T Consensus 38 vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~ 79 (222)
T PRK13189 38 FVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQ 79 (222)
T ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 44456679999999999999999999997543 566666663
No 334
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=85.62 E-value=0.6 Score=39.27 Aligned_cols=53 Identities=11% Similarity=0.147 Sum_probs=34.0
Q ss_pred EEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhh-hhHHHHhCCCCcccccccccEEEE
Q 005374 158 IQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVA 222 (699)
Q Consensus 158 V~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~-~~~L~~k~~i~~~f~V~gyPTl~~ 222 (699)
+.|..|||++|.+....+++. + +.+-.+|++.++. ...+.+..+ ..++|+|++
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~-----~-i~~~~~di~~~~~~~~~~~~~~g------~~~vP~i~i 55 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSK-----G-VTFTEIRVDGDPALRDEMMQRSG------RRTVPQIFI 55 (79)
T ss_pred EEEecCCChhHHHHHHHHHHc-----C-CCcEEEEecCCHHHHHHHHHHhC------CCCcCEEEE
Confidence 567789999999988777653 2 3556667664432 223444445 458999743
No 335
>PTZ00062 glutaredoxin; Provisional
Probab=85.47 E-value=20 Score=36.50 Aligned_cols=74 Identities=12% Similarity=0.081 Sum_probs=49.3
Q ss_pred EEEEEEc-C---CCCCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCCCceeecCCCChhH
Q 005374 280 VKVIFFS-K---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSR 355 (699)
Q Consensus 280 v~vl~f~-~---~~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~~~~~~ 355 (699)
..|++|. + .+....+.+..++.+|. .+.|..|.. + |+|...|++++|+++.. --.+.| .+...
T Consensus 19 ~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-~~~F~~V~~------d----~~V~~vPtfv~~~~g~~-i~r~~G-~~~~~ 85 (204)
T PTZ00062 19 KLVLYVKSSKEPEYEQLMDVCNALVEDFP-SLEFYVVNL------A----DANNEYGVFEFYQNSQL-INSLEG-CNTST 85 (204)
T ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHCC-CcEEEEEcc------c----cCcccceEEEEEECCEE-EeeeeC-CCHHH
Confidence 5577773 2 23335567777888884 688888841 1 99999999999997542 112344 36777
Q ss_pred HHHHHHHhhcc
Q 005374 356 LSEVMEQNKLQ 366 (699)
Q Consensus 356 L~~fi~~~~~~ 366 (699)
|..++..+.-.
T Consensus 86 ~~~~~~~~~~~ 96 (204)
T PTZ00062 86 LVSFIRGWAQK 96 (204)
T ss_pred HHHHHHHHcCC
Confidence 88888776544
No 336
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=84.67 E-value=1.2 Score=36.70 Aligned_cols=53 Identities=9% Similarity=0.140 Sum_probs=33.3
Q ss_pred EEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhh-hHHHHhCCCCcccccc-cccEEE
Q 005374 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLA-THLAERKPIGQIFFRR-GLPSLV 221 (699)
Q Consensus 157 lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~-~~L~~k~~i~~~f~V~-gyPTl~ 221 (699)
++.|..+||++|.+....+++. + +.+-.+|.+.+... ..+-+..+ .. ++|+|+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~-i~~~~i~i~~~~~~~~~~~~~~~------~~~~vP~v~ 56 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----G-VDYEEIDVDGDPALREEMINRSG------GRRTVPQIF 56 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----C-CcEEEEECCCCHHHHHHHHHHhC------CCCccCEEE
Confidence 4678889999998877666542 2 36667787754322 22333344 33 789874
No 337
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=83.98 E-value=1.5 Score=36.34 Aligned_cols=53 Identities=13% Similarity=0.085 Sum_probs=34.6
Q ss_pred EEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhh-hhHHHHhCCCCcccccccccEEE
Q 005374 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLV 221 (699)
Q Consensus 157 lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~-~~~L~~k~~i~~~f~V~gyPTl~ 221 (699)
++.|+.|||++|++..-.+++. + +.+-.+|+.++.. ...+.+..+ -..+|+|+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-----g-i~~~~~di~~~~~~~~el~~~~g------~~~vP~v~ 56 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-----G-LPYVEINIDIFPERKAELEERTG------SSVVPQIF 56 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-----C-CceEEEECCCCHHHHHHHHHHhC------CCCcCEEE
Confidence 5788999999998877655542 2 3677778875433 223445445 34889874
No 338
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=83.50 E-value=2 Score=40.37 Aligned_cols=52 Identities=19% Similarity=0.114 Sum_probs=37.0
Q ss_pred CcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCCh
Q 005374 38 SHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDP 90 (699)
Q Consensus 38 d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~I~~Ay~vL~d~ 90 (699)
.-..||||++..+.++|.+.|.+|-...+|++. ++.-.=.+|..|.+.|...
T Consensus 59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kG-GSfYLQSKV~rAKErl~~E 110 (127)
T PF03656_consen 59 EARQILNVKEELSREEIQKRYKHLFKANDPSKG-GSFYLQSKVFRAKERLEQE 110 (127)
T ss_dssp HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCT-S-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcC-CCHHHHHHHHHHHHHHHHH
Confidence 445899999999999999999999999999976 4444455778888877643
No 339
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=82.89 E-value=2.4 Score=44.76 Aligned_cols=43 Identities=14% Similarity=0.090 Sum_probs=35.6
Q ss_pred CCcEEEEEe-ccCCCCCCCcchHHHHHHHHhhccc-ceeeeeccc
Q 005374 153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGD 195 (699)
Q Consensus 153 ~~~~lV~FY-apwC~hCk~l~p~~~~~A~~L~g~~-~va~Vdc~~ 195 (699)
++++++.|| +.||+.|..-.|.+.+..++++... .|..|.++.
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds 142 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDS 142 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 456777777 8999999999999999999997654 677888874
No 340
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=82.15 E-value=26 Score=40.48 Aligned_cols=173 Identities=13% Similarity=0.059 Sum_probs=88.7
Q ss_pred CCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEEEcCCCCCCCCc
Q 005374 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDC 232 (699)
Q Consensus 153 ~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~f~~g~~~~~~ 232 (699)
+.+.|+.|.. -|..|..+....+++++.- +.+.+-.-+ . . ....|++.++.+|.. .
T Consensus 19 ~~v~~~~~~~-~~~~~~~~~~~~~~~~~~s-~ki~~~~~~-----~--------~------~~~~p~~~~~~~~~~---~ 74 (515)
T TIGR03140 19 NPVTLVLSAG-SHEKSKELLELLDEIASLS-DKISLTQNT-----A--------D------TLRKPSFTILRDGAD---T 74 (515)
T ss_pred CCEEEEEEeC-CCchhHHHHHHHHHHHHhC-CCeEEEEec-----C--------C------cCCCCeEEEecCCcc---c
Confidence 4445555655 5888877666666555432 222221111 0 1 125699999876643 3
Q ss_pred cccccCCcCHHHHHHHHHHHhc-cCCcceecccchhhhhhhhhcCCCcEEEE-EEcCCCCCchH---HHHHHHHhccCCc
Q 005374 233 MTRFEGELSVDAVTDWFATAIL-KLPRIFYYTKESMGKNFLAKTGPHKVKVI-FFSKTGERASP---FVRQISRNYWAYA 307 (699)
Q Consensus 233 ~~~Y~G~rs~~~Iv~fi~k~v~-~lP~~~~it~~~~~~~Fl~~~~~~~v~vl-~f~~~~~~~~~---~~~~~A~~~~~~~ 307 (699)
...|.|--.-..+-.|+...+. +.|.. -++ ++ ..+.+.... ..+.+. |.+.+|..-+- .+..+|.. ...+
T Consensus 75 ~i~f~g~P~g~Ef~s~i~~i~~~~~~~~-~l~-~~-~~~~~~~~~-~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~-~p~i 149 (515)
T TIGR03140 75 GIRFAGIPGGHEFTSLVLAILQVGGHGP-KLD-EG-IIDRIRRLN-GPLHFETYVSLTCQNCPDVVQALNQMALL-NPNI 149 (515)
T ss_pred ceEEEecCCcHHHHHHHHHHHHhcCCCC-CCC-HH-HHHHHHhcC-CCeEEEEEEeCCCCCCHHHHHHHHHHHHh-CCCc
Confidence 5788876666666666654321 22321 122 22 223333322 223333 44444432222 11223333 2345
Q ss_pred eEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCCCceeecCCCChhHHHHHHH
Q 005374 308 SFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVME 361 (699)
Q Consensus 308 ~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~~~~~~L~~fi~ 361 (699)
..-.+. ..+.++++++|++.+.|++++ +++ ..+.|..+...+.+.+.
T Consensus 150 ~~~~id--~~~~~~~~~~~~v~~VP~~~i---~~~--~~~~g~~~~~~~~~~l~ 196 (515)
T TIGR03140 150 SHTMID--GALFQDEVEALGIQGVPAVFL---NGE--EFHNGRMDLAELLEKLE 196 (515)
T ss_pred eEEEEE--chhCHHHHHhcCCcccCEEEE---CCc--EEEecCCCHHHHHHHHh
Confidence 543332 223488999999999999987 222 34677777766655543
No 341
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=82.09 E-value=1.2 Score=45.13 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=30.8
Q ss_pred CCcEEEEEeccCCCCCCCcchHH---HHHHHHhhcccceeeeec
Q 005374 153 SKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVEL 193 (699)
Q Consensus 153 ~~~~lV~FYapwC~hCk~l~p~~---~~~A~~L~g~~~va~Vdc 193 (699)
+++-+|+|++..|+||.++.|.+ +.+.+.+.+.+.+..+..
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence 45679999999999999999865 677777755445555443
No 342
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=81.98 E-value=15 Score=33.30 Aligned_cols=78 Identities=18% Similarity=0.200 Sum_probs=43.7
Q ss_pred EEEEEeccCCh--hHHHHHHHHHHHHHhhccCcccccccccccchhHHHhcCCCeEEEEEEeCc-chHHHHHHhcccccc
Q 005374 407 YCVILAGRLSP--ELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRLTFAWLDGE-AQDRYCSFYLFSETS 483 (699)
Q Consensus 407 lCvI~~~~~~~--~~~~~~~~lr~~a~~l~~~~~~~~~~~~~~~~~~a~~~k~~~l~F~wvd~~-~q~~f~~~fl~~~~~ 483 (699)
-|+|++..+.+ +.+..++.+.-+|++.- ..+++--.+....+.++++ .-.++++=|..=
T Consensus 16 p~lvlf~D~Edeg~l~~A~~llQpiAd~~~---------------aka~~k~~dap~~f~~a~ede~tdsLRDf~nL--- 77 (116)
T cd03071 16 PCLVLFVDSEDEGESEAAKQLIQPIAEKII---------------AKYKAKEEEAPLLFFVAGEDDMTDSLRDYTNL--- 77 (116)
T ss_pred ceEEEEecccchhhHHHHHHHHHHHHHHHH---------------HHhhccCCCcceeeeeeccchHHHHHHHhcCC---
Confidence 58888875443 47788888988888422 1222111123344444443 346666665221
Q ss_pred ccccCCcCCCCCCCeEEEEEeecCCccccceee
Q 005374 484 FETCGARRDMSDVPRLFIVRYKRNTTEDEAKIE 516 (699)
Q Consensus 484 ~~~c~~~~~~~~~p~lvI~~~rr~~~~~~~~~~ 516 (699)
.+..|.+||+ |-..+ .+|-
T Consensus 78 ---------~d~~P~LviL----Dip~r-~~~v 96 (116)
T cd03071 78 ---------PEAAPLLTIL----DMSAR-AKYV 96 (116)
T ss_pred ---------CccCceEEEE----ecccc-ceEe
Confidence 2334999999 76653 5555
No 343
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=81.14 E-value=1.3 Score=37.84 Aligned_cols=80 Identities=15% Similarity=0.115 Sum_probs=52.5
Q ss_pred EEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEEEcCCCCCCCCccccc
Q 005374 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF 236 (699)
Q Consensus 157 lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~f~~g~~~~~~~~~Y 236 (699)
++.|..|.|+-|..+....++++.. ....+-.||.++++. +-++|+. ..|.|.+=..+... .....
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~--~~~~l~~vDI~~d~~---l~~~Y~~-------~IPVl~~~~~~~~~--~~~~~ 67 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE--FPFELEEVDIDEDPE---LFEKYGY-------RIPVLHIDGIRQFK--EQEEL 67 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT--STCEEEEEETTTTHH---HHHHSCT-------STSEEEETT-GGGC--TSEEE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh--cCceEEEEECCCCHH---HHHHhcC-------CCCEEEEcCccccc--cccee
Confidence 6788999999998766555554322 225799999996665 8889973 68987765422111 12344
Q ss_pred cCCcCHHHHHHHHH
Q 005374 237 EGELSVDAVTDWFA 250 (699)
Q Consensus 237 ~G~rs~~~Iv~fi~ 250 (699)
.+..+.+.|.+|++
T Consensus 68 ~~~~d~~~L~~~L~ 81 (81)
T PF05768_consen 68 KWRFDEEQLRAWLE 81 (81)
T ss_dssp ESSB-HHHHHHHHH
T ss_pred CCCCCHHHHHHHhC
Confidence 67889999998874
No 344
>PRK10638 glutaredoxin 3; Provisional
Probab=80.39 E-value=1.9 Score=36.76 Aligned_cols=54 Identities=9% Similarity=0.143 Sum_probs=34.1
Q ss_pred EEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchh-hhhHHHHhCCCCcccccccccEEEE
Q 005374 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-LATHLAERKPIGQIFFRRGLPSLVA 222 (699)
Q Consensus 157 lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~-~~~~L~~k~~i~~~f~V~gyPTl~~ 222 (699)
++.|..+||++|++..-.+++. + +.+..+|++++. ....+.+..+ ...+|+|.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----g-i~y~~~dv~~~~~~~~~l~~~~g------~~~vP~i~~ 58 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----G-VSFQEIPIDGDAAKREEMIKRSG------RTTVPQIFI 58 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----C-CCcEEEECCCCHHHHHHHHHHhC------CCCcCEEEE
Confidence 4566679999998877555542 2 356677887554 2233555555 458998743
No 345
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=79.91 E-value=1.7 Score=38.73 Aligned_cols=56 Identities=14% Similarity=0.253 Sum_probs=33.9
Q ss_pred EEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhH----HHHhCCCCcccccccccEEEEcCCC
Q 005374 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATH----LAERKPIGQIFFRRGLPSLVAFPPG 226 (699)
Q Consensus 157 lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~----L~~k~~i~~~f~V~gyPTl~~f~~g 226 (699)
++.|-.|||++|.+....+++.. +.+..+|.++++.... +.+..| ...+|.| |.+|
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~------i~~~~vdid~~~~~~~~~~~l~~~tg------~~tvP~V--fi~g 69 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLG------VNPAVHEIDKEPAGKDIENALSRLGC------SPAVPAV--FVGG 69 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CCCEEEEcCCCccHHHHHHHHHHhcC------CCCcCeE--EECC
Confidence 57788999999988776554431 2455677764433222 333334 4588987 4555
No 346
>smart00594 UAS UAS domain.
Probab=79.84 E-value=9 Score=35.28 Aligned_cols=55 Identities=15% Similarity=0.091 Sum_probs=36.3
Q ss_pred CceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCCC---ce--eecCCCChhHHHHHH
Q 005374 306 YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVK---PV--VYYGSFNNSRLSEVM 360 (699)
Q Consensus 306 ~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~~---pv--~y~g~~~~~~L~~fi 360 (699)
.+.+..+.+...+...++..|++.++|+++++...+.. .+ ...|..+.+.|..++
T Consensus 62 ~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 62 NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred CEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 33343344444444779999999999999999765421 12 247888887776654
No 347
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=79.76 E-value=1.9 Score=43.26 Aligned_cols=103 Identities=17% Similarity=0.326 Sum_probs=67.5
Q ss_pred eEEEecCCCCcccc--cCCCcE-EEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccc
Q 005374 137 AFNVVTSEDFPSIF--HDSKPW-LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF 213 (699)
Q Consensus 137 ~V~~Lt~~nF~~~v--~~~~~~-lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~ 213 (699)
.|..++...|...| .+..+| +|..|...-+.|.=+.-.++.+|..+-. ++|.++-.+ . +-..|+
T Consensus 92 ~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~-iKFVki~at---~---cIpNYP------ 158 (240)
T KOG3170|consen 92 EVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ-IKFVKIPAT---T---CIPNYP------ 158 (240)
T ss_pred ceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc-ceEEecccc---c---ccCCCc------
Confidence 57888888888877 355555 4689999999999999999999998854 355544433 1 112343
Q ss_pred cccccEEEEcCCCCCC--CCccccccCCc-CHHHHHHHHHHH
Q 005374 214 RRGLPSLVAFPPGCKS--SDCMTRFEGEL-SVDAVTDWFATA 252 (699)
Q Consensus 214 V~gyPTl~~f~~g~~~--~~~~~~Y~G~r-s~~~Iv~fi~k~ 252 (699)
=...|||++|..|... ...+..+.|.+ +.+++..++.+.
T Consensus 159 e~nlPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 159 ESNLPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQA 200 (240)
T ss_pred ccCCCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence 3379999999988542 11223445554 455555555443
No 348
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=79.56 E-value=1.2 Score=42.39 Aligned_cols=42 Identities=10% Similarity=0.135 Sum_probs=32.8
Q ss_pred CCCcEEEEEeccCCCCCCCcchHHHHHHHHh--hcccceeeeec
Q 005374 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALL--EGIANTGMVEL 193 (699)
Q Consensus 152 ~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L--~g~~~va~Vdc 193 (699)
+.++.|++|+.+.|+||.++.+...++.+.+ .|.+.+.-++.
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 5678899999999999999999999888887 55555554444
No 349
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=79.26 E-value=2 Score=43.38 Aligned_cols=85 Identities=16% Similarity=0.228 Sum_probs=61.8
Q ss_pred CCcceEEEecC-CCCccccc---CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCC
Q 005374 133 HSVHAFNVVTS-EDFPSIFH---DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPI 208 (699)
Q Consensus 133 ~~~~~V~~Lt~-~nF~~~v~---~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i 208 (699)
|.+..|++++. +.|-..|+ +....+|..|-|....|-.+-....=+|.++ +.++|.+|..+ .. +.
T Consensus 135 p~~~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAey-P~vKFckikss---~~-------ga 203 (273)
T KOG3171|consen 135 PRYGFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEY-PIVKFCKIKSS---NT-------GA 203 (273)
T ss_pred CccceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccC-CceeEEEeeec---cc-------cc
Confidence 34456788864 67888884 3456778999999999988888887777766 45688888766 21 22
Q ss_pred CcccccccccEEEEcCCCCC
Q 005374 209 GQIFFRRGLPSLVAFPPGCK 228 (699)
Q Consensus 209 ~~~f~V~gyPTl~~f~~g~~ 228 (699)
+..|..+++|||.+|.+|.-
T Consensus 204 s~~F~~n~lP~LliYkgGeL 223 (273)
T KOG3171|consen 204 SDRFSLNVLPTLLIYKGGEL 223 (273)
T ss_pred hhhhcccCCceEEEeeCCch
Confidence 23345789999999998853
No 350
>PHA03050 glutaredoxin; Provisional
Probab=78.91 E-value=1.4 Score=40.05 Aligned_cols=57 Identities=7% Similarity=0.051 Sum_probs=34.1
Q ss_pred EEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccc---hhh-hhHHHHhCCCCcccccccccEEEE
Q 005374 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGD---IRL-ATHLAERKPIGQIFFRRGLPSLVA 222 (699)
Q Consensus 157 lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~---~~~-~~~L~~k~~i~~~f~V~gyPTl~~ 222 (699)
++.|..+||++|++....+++..-.. ..+-.+|.++ ... ...+-+..| .+.+|+|++
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~---~~~~~i~i~~~~~~~~~~~~l~~~tG------~~tVP~IfI 75 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKR---GAYEIVDIKEFKPENELRDYFEQITG------GRTVPRIFF 75 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCc---CCcEEEECCCCCCCHHHHHHHHHHcC------CCCcCEEEE
Confidence 67899999999988776665542111 1345556653 111 222444445 458999843
No 351
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=78.62 E-value=0.71 Score=41.81 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=55.4
Q ss_pred CCCCccccc--CCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhH-HHHhCCCCcccccccccE
Q 005374 143 SEDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATH-LAERKPIGQIFFRRGLPS 219 (699)
Q Consensus 143 ~~nF~~~v~--~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~-L~~k~~i~~~f~V~gyPT 219 (699)
.+.++.++. .+++++|+=.+..|+-+......|++.+....+.+.++-|+.-+++...+ +|+++||. ..=|.
T Consensus 7 ~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~-----HeSPQ 81 (105)
T PF11009_consen 7 EEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVK-----HESPQ 81 (105)
T ss_dssp HHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT---------SSE
T ss_pred HHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCC-----cCCCc
Confidence 345666663 47788888889999999888888888888776657899999887766554 78888853 57799
Q ss_pred EEEcCCCCC
Q 005374 220 LVAFPPGCK 228 (699)
Q Consensus 220 l~~f~~g~~ 228 (699)
++++.+|..
T Consensus 82 ~ili~~g~~ 90 (105)
T PF11009_consen 82 VILIKNGKV 90 (105)
T ss_dssp EEEEETTEE
T ss_pred EEEEECCEE
Confidence 999999963
No 352
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=78.39 E-value=2.5 Score=36.85 Aligned_cols=50 Identities=12% Similarity=0.121 Sum_probs=31.0
Q ss_pred cCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhh-hHHHHhCCCCcccccccccEEEEcCCC
Q 005374 163 DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLA-THLAERKPIGQIFFRRGLPSLVAFPPG 226 (699)
Q Consensus 163 pwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~-~~L~~k~~i~~~f~V~gyPTl~~f~~g 226 (699)
|||++|++....+++.. +.+..+|..++... ..|.+..| .+.+|+|. .+|
T Consensus 21 ~~Cp~C~~ak~~L~~~~------i~y~~idv~~~~~~~~~l~~~~g------~~tvP~vf--i~g 71 (90)
T cd03028 21 PRCGFSRKVVQILNQLG------VDFGTFDILEDEEVRQGLKEYSN------WPTFPQLY--VNG 71 (90)
T ss_pred CCCcHHHHHHHHHHHcC------CCeEEEEcCCCHHHHHHHHHHhC------CCCCCEEE--ECC
Confidence 79999988765554432 36777777655433 23444445 45899974 455
No 353
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=77.84 E-value=11 Score=39.42 Aligned_cols=73 Identities=21% Similarity=0.153 Sum_probs=54.1
Q ss_pred CCCCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCCCceeecCCCChhHHHHHHHHhhc
Q 005374 288 TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKL 365 (699)
Q Consensus 288 ~~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~~~~~~L~~fi~~~~~ 365 (699)
.|....|.+..+|.+|. ...|..|.+..| +..+..+||...||.++|..+.+. ..+.| -+...|+.-|.++.-
T Consensus 35 PCk~IaP~Fs~lankYp-~aVFlkVdVd~c--~~taa~~gV~amPTFiff~ng~ki-d~~qG-Ad~~gLe~kv~~~~s 107 (288)
T KOG0908|consen 35 PCKRIAPIFSDLANKYP-GAVFLKVDVDEC--RGTAATNGVNAMPTFIFFRNGVKI-DQIQG-ADASGLEEKVAKYAS 107 (288)
T ss_pred hHHhhhhHHHHhhhhCc-ccEEEEEeHHHh--hchhhhcCcccCceEEEEecCeEe-eeecC-CCHHHHHHHHHHHhc
Confidence 45668899999999994 566888877665 568899999999999999875432 22454 466778887776543
No 354
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=76.79 E-value=3.3 Score=35.47 Aligned_cols=53 Identities=13% Similarity=0.208 Sum_probs=32.6
Q ss_pred EEEEeccCCCCCCCcchHHHHHHHHhhcc-cceeeeeccchh--hhhHHHHhC-CCCcccccccccEEEE
Q 005374 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIR--LATHLAERK-PIGQIFFRRGLPSLVA 222 (699)
Q Consensus 157 lV~FYapwC~hCk~l~p~~~~~A~~L~g~-~~va~Vdc~~~~--~~~~L~~k~-~i~~~f~V~gyPTl~~ 222 (699)
++.|-.|+|++|++....+. .. +.+..++.+.+. ......++. | .+.+|+|++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~~~~~~~~~~~~~~~g------~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD-------RKGVDYEEIDVDDDEPEEAREMVKRGKG------QRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHH-------HcCCCcEEEEecCCcHHHHHHHHHHhCC------CCCcCEEEE
Confidence 46677899999987664444 22 256666666443 322233333 4 569999776
No 355
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=75.57 E-value=5.1 Score=40.84 Aligned_cols=71 Identities=18% Similarity=0.187 Sum_probs=49.5
Q ss_pred hhhhhhcCCCcEEEEEE---cCCCCCchHHHHHHHHhcc-CCceEEEEEccccccHhHHhhcCCC------CCCEEEEEc
Q 005374 269 KNFLAKTGPHKVKVIFF---SKTGERASPFVRQISRNYW-AYASFAFVLWREEESSIWWNTFEVE------SAPAIVFLK 338 (699)
Q Consensus 269 ~~Fl~~~~~~~v~vl~f---~~~~~~~~~~~~~~A~~~~-~~~~Fg~V~~~~~~s~~l~~kf~V~------~~PtIvlfk 338 (699)
+.-++......|.+-|| +++|.+..|.+..++.+|. +.++||.|..+- -++.+.+|+|. ..||+++|+
T Consensus 136 deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGr--fpd~a~kfris~s~~srQLPT~ilFq 213 (265)
T KOG0914|consen 136 DEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGR--FPDVAAKFRISLSPGSRQLPTYILFQ 213 (265)
T ss_pred HHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeecc--CcChHHheeeccCcccccCCeEEEEc
Confidence 33344333334655576 3456667888888888776 568999998654 36789999985 389999998
Q ss_pred CCC
Q 005374 339 DPG 341 (699)
Q Consensus 339 ~~~ 341 (699)
++.
T Consensus 214 ~gk 216 (265)
T KOG0914|consen 214 KGK 216 (265)
T ss_pred cch
Confidence 754
No 356
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=74.55 E-value=9 Score=32.16 Aligned_cols=61 Identities=16% Similarity=0.199 Sum_probs=40.5
Q ss_pred CCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCCCceeecCCC-ChhHHHHHH
Q 005374 290 ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSF-NNSRLSEVM 360 (699)
Q Consensus 290 ~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~~-~~~~L~~fi 360 (699)
+...+.++.++.++...+.|..|. ..+.+.+|++.+.|++++ +++ ..+.|.. +.+.|.+++
T Consensus 14 ~~~~~~~~~~~~e~~~~~~~~~v~-----~~~~a~~~~v~~vPti~i---~G~--~~~~G~~~~~~~l~~~l 75 (76)
T TIGR00412 14 QMTEKNVKKAVEELGIDAEFEKVT-----DMNEILEAGVTATPGVAV---DGE--LVIMGKIPSKEEIKEIL 75 (76)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEeC-----CHHHHHHcCCCcCCEEEE---CCE--EEEEeccCCHHHHHHHh
Confidence 335567777888887677776663 233577899999999999 232 2266653 336676665
No 357
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=74.23 E-value=9 Score=34.80 Aligned_cols=94 Identities=16% Similarity=0.095 Sum_probs=43.5
Q ss_pred cccchhhhhhhhhcCCCcEEEEEEcC-CCCCchHHHH---HHHHhccCCceEEEEEcccc--ccHhHHhhcCCCC-CCEE
Q 005374 262 YTKESMGKNFLAKTGPHKVKVIFFSK-TGERASPFVR---QISRNYWAYASFAFVLWREE--ESSIWWNTFEVES-APAI 334 (699)
Q Consensus 262 it~~~~~~~Fl~~~~~~~v~vl~f~~-~~~~~~~~~~---~~A~~~~~~~~Fg~V~~~~~--~s~~l~~kf~V~~-~PtI 334 (699)
+++.+.+++++... .+++.++|=.+ .|.-....++ ..+....+.+.++++.+... -+..++.+|||.. -|-+
T Consensus 4 L~t~eql~~i~~~S-~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ 82 (105)
T PF11009_consen 4 LTTEEQLEEILEES-KEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQV 82 (105)
T ss_dssp --SHHHHHHHHHH----SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEE
T ss_pred cCCHHHHHHHHHhc-ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcE
Confidence 34555577877753 24464443322 2211111111 12233333488899887653 2367999999986 7999
Q ss_pred EEEcCCCCCceeecCCCChhHH
Q 005374 335 VFLKDPGVKPVVYYGSFNNSRL 356 (699)
Q Consensus 335 vlfk~~~~~pv~y~g~~~~~~L 356 (699)
++++++...-..-...++.+.|
T Consensus 83 ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 83 ILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EEEETTEEEEEEEGGG-SHHHH
T ss_pred EEEECCEEEEECccccCCHHhc
Confidence 9999754211112445665554
No 358
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=73.93 E-value=9.5 Score=35.06 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=19.2
Q ss_pred HhHHhhcCCCCCCEEEEEcCCCC
Q 005374 320 SIWWNTFEVESAPAIVFLKDPGV 342 (699)
Q Consensus 320 ~~l~~kf~V~~~PtIvlfk~~~~ 342 (699)
..+++.|+|...|+++++..+++
T Consensus 89 ~~~~~~~~v~~~P~~~lid~~G~ 111 (131)
T cd03009 89 SRLNRTFKIEGIPTLIILDADGE 111 (131)
T ss_pred HHHHHHcCCCCCCEEEEECCCCC
Confidence 46788999999999999976553
No 359
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=73.87 E-value=4 Score=36.23 Aligned_cols=48 Identities=13% Similarity=0.052 Sum_probs=29.7
Q ss_pred cCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhh-HHHHhCCCCcccccccccEEEE
Q 005374 163 DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLAT-HLAERKPIGQIFFRRGLPSLVA 222 (699)
Q Consensus 163 pwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~-~L~~k~~i~~~f~V~gyPTl~~ 222 (699)
|||++|++....+.+. + +.+-.+|..++.... .|.+..| ...+|.|++
T Consensus 25 ~~Cp~C~~ak~lL~~~-----~-i~~~~~di~~~~~~~~~l~~~tg------~~tvP~vfi 73 (97)
T TIGR00365 25 PQCGFSARAVQILKAC-----G-VPFAYVNVLEDPEIRQGIKEYSN------WPTIPQLYV 73 (97)
T ss_pred CCCchHHHHHHHHHHc-----C-CCEEEEECCCCHHHHHHHHHHhC------CCCCCEEEE
Confidence 8999998877655543 2 256677876544333 2444444 458888743
No 360
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=73.84 E-value=9.7 Score=30.58 Aligned_cols=41 Identities=22% Similarity=0.121 Sum_probs=28.6
Q ss_pred hHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEE
Q 005374 293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVF 336 (699)
Q Consensus 293 ~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvl 336 (699)
.+.+..++..+ ..+.|..+...+ .++++++|++.+.|++++
T Consensus 18 ~~~l~~l~~~~-~~i~~~~id~~~--~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 18 VQAANRIAALN-PNISAEMIDAAE--FPDLADEYGVMSVPAIVI 58 (67)
T ss_pred HHHHHHHHHhC-CceEEEEEEccc--CHhHHHHcCCcccCEEEE
Confidence 45555555443 457788776432 467999999999999876
No 361
>PRK13191 putative peroxiredoxin; Provisional
Probab=72.72 E-value=5 Score=41.06 Aligned_cols=42 Identities=7% Similarity=-0.088 Sum_probs=34.3
Q ss_pred cEEEEEeccCCCCCCCcchHHHHHHHHhhccc-ceeeeeccch
Q 005374 155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDI 196 (699)
Q Consensus 155 ~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~-~va~Vdc~~~ 196 (699)
.+|+.|.++||+.|..-.+.+.+.+.+++... .|..|.++..
T Consensus 36 vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~ 78 (215)
T PRK13191 36 FVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSN 78 (215)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
Confidence 34446779999999999999999999997654 7888888844
No 362
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=70.85 E-value=21 Score=32.12 Aligned_cols=37 Identities=24% Similarity=0.266 Sum_probs=28.2
Q ss_pred HhHHhhcCCCCCCEEEEEcCCCCCceeecCCCChhHHH
Q 005374 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLS 357 (699)
Q Consensus 320 ~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~~~~~~L~ 357 (699)
..+++.|+|.+.|+++++..++ ....+.|-.+.+.|.
T Consensus 83 ~~~~~~~~i~~~P~~~vid~~g-i~~~~~g~~~~~~~~ 119 (123)
T cd03011 83 GVISARWGVSVTPAIVIVDPGG-IVFVTTGVTSEWGLR 119 (123)
T ss_pred cHHHHhCCCCcccEEEEEcCCC-eEEEEeccCCHHHHH
Confidence 5699999999999999998765 333457777776664
No 363
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=70.23 E-value=16 Score=42.45 Aligned_cols=43 Identities=9% Similarity=0.205 Sum_probs=34.1
Q ss_pred HhHHhhcCCCCCCEEEEEcCCCCCceeecCCCChhHHHHHHHH
Q 005374 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (699)
Q Consensus 320 ~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~~~~~~L~~fi~~ 362 (699)
..+++.|+|...|+++++..++.....+.|.++.+.|..+|+.
T Consensus 129 ~~lak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 129 GTLAQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred HHHHHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 5688999999999998876555443346899999999999883
No 364
>PF13728 TraF: F plasmid transfer operon protein
Probab=70.07 E-value=22 Score=36.32 Aligned_cols=76 Identities=17% Similarity=0.204 Sum_probs=49.5
Q ss_pred EEEEEcCCC---CCchHHHHHHHHhccCCceEEEEEcccc---------ccHhHHhhcCCCCCCEEEEEcCCCCCce-ee
Q 005374 281 KVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREE---------ESSIWWNTFEVESAPAIVFLKDPGVKPV-VY 347 (699)
Q Consensus 281 ~vl~f~~~~---~~~~~~~~~~A~~~~~~~~Fg~V~~~~~---------~s~~l~~kf~V~~~PtIvlfk~~~~~pv-~y 347 (699)
.++||.++| ....|.++.++..| .+....|..... ....+++++||...|++++...++.+.. +-
T Consensus 124 L~~F~~~~C~~C~~~~pil~~~~~~y--g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~~pv~ 201 (215)
T PF13728_consen 124 LFFFYRSDCPYCQQQAPILQQFADKY--GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKWYPVS 201 (215)
T ss_pred EEEEEcCCCchhHHHHHHHHHHHHHh--CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeEEEEe
Confidence 344554433 33567888888877 355555544211 2367999999999999999988764322 34
Q ss_pred cCCCChhHHHH
Q 005374 348 YGSFNNSRLSE 358 (699)
Q Consensus 348 ~g~~~~~~L~~ 358 (699)
.|-++.++|.+
T Consensus 202 ~G~~s~~~L~~ 212 (215)
T PF13728_consen 202 QGFMSLDELED 212 (215)
T ss_pred eecCCHHHHHH
Confidence 77777777654
No 365
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=69.14 E-value=29 Score=30.26 Aligned_cols=69 Identities=9% Similarity=0.013 Sum_probs=41.1
Q ss_pred CcEEEEEEc-CCC---CCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCCCceeecCCCCh
Q 005374 278 HKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN 353 (699)
Q Consensus 278 ~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~~~~ 353 (699)
+.+.+.+|. ..| ......+..++..+ +.+.|..+.... ..+++++|+|.+.|++++ + ++ ..+.|..+.
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~-~~i~~~~vd~~~--~~e~a~~~~V~~vPt~vi--d-G~--~~~~G~~~~ 83 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLN-PNIEHEMIDGAL--FQDEVEERGIMSVPAIFL--N-GE--LFGFGRMTL 83 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHC-CCceEEEEEhHh--CHHHHHHcCCccCCEEEE--C-CE--EEEeCCCCH
Confidence 345565553 322 22334455566544 357777776432 467999999999999975 2 32 345675443
Q ss_pred h
Q 005374 354 S 354 (699)
Q Consensus 354 ~ 354 (699)
+
T Consensus 84 ~ 84 (89)
T cd03026 84 E 84 (89)
T ss_pred H
Confidence 3
No 366
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=66.13 E-value=8.4 Score=35.32 Aligned_cols=65 Identities=15% Similarity=0.163 Sum_probs=36.7
Q ss_pred CCcEEEEEEc-CC---CCCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCC--CCEEEEEcCCCC
Q 005374 277 PHKVKVIFFS-KT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVES--APAIVFLKDPGV 342 (699)
Q Consensus 277 ~~~v~vl~f~-~~---~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~--~PtIvlfk~~~~ 342 (699)
.+++.+|.|. +- |....+.+...+..+.....|..|.+... ...+...|++.+ .|++++|..+++
T Consensus 18 ~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~-~~~~~~~~~~~g~~vPt~~f~~~~Gk 88 (117)
T cd02959 18 SGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDD-EEPKDEEFSPDGGYIPRILFLDPSGD 88 (117)
T ss_pred cCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCC-CCchhhhcccCCCccceEEEECCCCC
Confidence 3566666553 32 23334445443332223345666665432 234567889876 899999975554
No 367
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=63.98 E-value=5.2 Score=37.65 Aligned_cols=66 Identities=15% Similarity=0.169 Sum_probs=51.4
Q ss_pred cCCCcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccE-EEEcCCC
Q 005374 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPS-LVAFPPG 226 (699)
Q Consensus 151 ~~~~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPT-l~~f~~g 226 (699)
..+++++|-|-.+|.+.|.++-....++|+.++....|..||.++-+. +.+-|. +. -|. +++|-++
T Consensus 18 e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpd---fn~~ye------l~-dP~tvmFF~rn 84 (133)
T PF02966_consen 18 EEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPD---FNQMYE------LY-DPCTVMFFFRN 84 (133)
T ss_dssp -SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHC---CHHHTT------S--SSEEEEEEETT
T ss_pred cCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchh---hhcccc------cC-CCeEEEEEecC
Confidence 478899999999999999999999999999999999999999995544 556665 44 555 5666333
No 368
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=62.28 E-value=21 Score=32.92 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=18.1
Q ss_pred HhHHhhcCCCCCCEEEEEcCCC
Q 005374 320 SIWWNTFEVESAPAIVFLKDPG 341 (699)
Q Consensus 320 ~~l~~kf~V~~~PtIvlfk~~~ 341 (699)
..+.+.|+|.+.|+++++..++
T Consensus 89 ~~~~~~~~v~~iPt~~lid~~G 110 (132)
T cd02964 89 ELLEKQFKVEGIPTLVVLKPDG 110 (132)
T ss_pred HHHHHHcCCCCCCEEEEECCCC
Confidence 3577889999999999997654
No 369
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=62.19 E-value=6.8 Score=44.08 Aligned_cols=60 Identities=8% Similarity=-0.033 Sum_probs=34.3
Q ss_pred EEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCC-C--CcccccccccEEEE
Q 005374 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKP-I--GQIFFRRGLPSLVA 222 (699)
Q Consensus 157 lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~-i--~~~f~V~gyPTl~~ 222 (699)
++.|..|||++|++....+.+. | +.+-.||+++++....+-++.+ . .+....+++|+|++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-----g-i~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-----D-IPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----C-CCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 6788999999998766444432 2 3666788875543222222211 0 00011568999865
No 370
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=61.21 E-value=22 Score=34.24 Aligned_cols=54 Identities=13% Similarity=-0.017 Sum_probs=40.9
Q ss_pred CcEEEEEe-ccCCCCCCCc-chHHHHHHHHhhccc--ceeeeeccchhhhhHHHHhCC
Q 005374 154 KPWLIQVY-SDGSYLCGQF-SGAWKTIAALLEGIA--NTGMVELGDIRLATHLAERKP 207 (699)
Q Consensus 154 ~~~lV~FY-apwC~hCk~l-~p~~~~~A~~L~g~~--~va~Vdc~~~~~~~~L~~k~~ 207 (699)
+++++.|| +.||+.|..- .+.+.+...+++..+ .|..|.++........|++.+
T Consensus 30 k~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~ 87 (155)
T cd03013 30 KKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALG 87 (155)
T ss_pred CcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhC
Confidence 34444444 7799999997 999999999997554 488888886656666788776
No 371
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=60.96 E-value=16 Score=42.21 Aligned_cols=53 Identities=9% Similarity=0.159 Sum_probs=40.4
Q ss_pred CCCCchHHHHHHHHhccCCceEEEEEccccc---cHhHHhhcCCCCCCEEEEEcCC
Q 005374 288 TGERASPFVRQISRNYWAYASFAFVLWREEE---SSIWWNTFEVESAPAIVFLKDP 340 (699)
Q Consensus 288 ~~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~---s~~l~~kf~V~~~PtIvlfk~~ 340 (699)
+|-...|.++.+|....+--....|...+|. +..+|.+|+|+.+|+|..|+.+
T Consensus 71 hCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlryf~~~ 126 (606)
T KOG1731|consen 71 HCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRYFPPD 126 (606)
T ss_pred hhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeeecCCc
Confidence 4556789999988876555555555555553 4679999999999999999885
No 372
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=60.18 E-value=37 Score=29.11 Aligned_cols=22 Identities=14% Similarity=0.315 Sum_probs=18.3
Q ss_pred HhHHhhcCCCCCCEEEEEcCCC
Q 005374 320 SIWWNTFEVESAPAIVFLKDPG 341 (699)
Q Consensus 320 ~~l~~kf~V~~~PtIvlfk~~~ 341 (699)
..+.+.|++.+.|+++++.+.+
T Consensus 87 ~~~~~~~~~~~~P~~~l~d~~g 108 (116)
T cd02966 87 GELAKAYGVRGLPTTFLIDRDG 108 (116)
T ss_pred chHHHhcCcCccceEEEECCCC
Confidence 5688999999999999996655
No 373
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=59.32 E-value=16 Score=36.94 Aligned_cols=38 Identities=16% Similarity=0.259 Sum_probs=32.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcC
Q 005374 46 KPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLT 88 (699)
Q Consensus 46 ~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~I~~Ay~vL~ 88 (699)
+++|+.+||.+|+.++..+| .++.+.-.+|..||+.+-
T Consensus 1 S~~ASfeEIq~Arn~ll~~y-----~gd~~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQY-----AGDEKSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHHH
Confidence 57899999999999999999 345667889999999654
No 374
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=58.46 E-value=19 Score=32.55 Aligned_cols=91 Identities=13% Similarity=0.088 Sum_probs=56.8
Q ss_pred CCcccccCC-CcEEEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchhhhhHHHHhCCCCcccccccccEEEEc
Q 005374 145 DFPSIFHDS-KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAF 223 (699)
Q Consensus 145 nF~~~v~~~-~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~f 223 (699)
+.+..+... .+.+|=|+..--+ .....|.++|..+.....++...-. . +.++++ + ..|++++|
T Consensus 10 ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~~~---~---~~~~~~------~-~~~~vvl~ 73 (107)
T cd03068 10 QVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTFDS---E---IFKSLK------V-SPGQLVVF 73 (107)
T ss_pred HHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEChH---H---HHHhcC------C-CCCceEEE
Confidence 345555444 6777777766433 4567899999999776677665533 2 566665 3 35778888
Q ss_pred CCCCCC---CCccccccCC-cCHHH-HHHHHHH
Q 005374 224 PPGCKS---SDCMTRFEGE-LSVDA-VTDWFAT 251 (699)
Q Consensus 224 ~~g~~~---~~~~~~Y~G~-rs~~~-Iv~fi~k 251 (699)
++..-. -+....|.|. .+.++ |..|++.
T Consensus 74 rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 74 QPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred CcHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 543211 0123467877 56656 9999864
No 375
>PRK10824 glutaredoxin-4; Provisional
Probab=58.16 E-value=10 Score=34.92 Aligned_cols=29 Identities=10% Similarity=-0.012 Sum_probs=18.6
Q ss_pred cCCCCCCCcchHHHHHHHHhhcccceeeeeccchh
Q 005374 163 DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR 197 (699)
Q Consensus 163 pwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~ 197 (699)
|||++|.+....+.+.. +.+..+|..++.
T Consensus 28 p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~ 56 (115)
T PRK10824 28 PSCGFSAQAVQALSACG------ERFAYVDILQNP 56 (115)
T ss_pred CCCchHHHHHHHHHHcC------CCceEEEecCCH
Confidence 79999988776555542 245556666443
No 376
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=57.69 E-value=18 Score=35.13 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=32.9
Q ss_pred HhHHhhcCCCCCCEEEEEcCCCCCceeecCCCChhHH---HHHHHHhhcc
Q 005374 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL---SEVMEQNKLQ 366 (699)
Q Consensus 320 ~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~~~~~~L---~~fi~~~~~~ 366 (699)
++|+++|+|++.|++++|...++.-....|-++.+.+ .+++.+..+.
T Consensus 105 ~ELa~kf~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~g~yk 154 (182)
T COG2143 105 EELAQKFAVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLKYVADGKYK 154 (182)
T ss_pred HHHHHHhccccCceEEEEcCCCCEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 6899999999999999998766542223777777654 4444444433
No 377
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=56.57 E-value=30 Score=31.48 Aligned_cols=37 Identities=11% Similarity=0.088 Sum_probs=25.2
Q ss_pred HhHHhhcCCCCCCEEEEEcCCCCCceeecCCCChhHH
Q 005374 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL 356 (699)
Q Consensus 320 ~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~~~~~~L 356 (699)
..+++.|++...|+.+++...+.....+.|.++.+.|
T Consensus 90 ~~~~~~~~v~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 90 GRVGIDLGVYGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred chHHHhcCCCCCCeEEEECCCceEEEEEeccCChHhc
Confidence 4678889999999777775555433345777766543
No 378
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=55.19 E-value=59 Score=31.41 Aligned_cols=72 Identities=14% Similarity=0.200 Sum_probs=44.7
Q ss_pred CCCchHHHHHHHHhccCCceEEEEEccccc----------cHhH-Hhhc---CCCCCCEEEEEcCCCCCce-eecCCCCh
Q 005374 289 GERASPFVRQISRNYWAYASFAFVLWREEE----------SSIW-WNTF---EVESAPAIVFLKDPGVKPV-VYYGSFNN 353 (699)
Q Consensus 289 ~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~----------s~~l-~~kf---~V~~~PtIvlfk~~~~~pv-~y~g~~~~ 353 (699)
|....|.+..++.+|. +.+..|...... ...+ ...| ++...|+.+++...+.... .+.|.++.
T Consensus 65 Cr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G~~i~~~~~G~~s~ 142 (153)
T TIGR02738 65 CHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNTRKAYPVLQGAVDE 142 (153)
T ss_pred HHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCCCCEEEEEeecccCH
Confidence 3445677777777763 445455443211 1223 3445 7888999999977554322 46888888
Q ss_pred hHHHHHHHH
Q 005374 354 SRLSEVMEQ 362 (699)
Q Consensus 354 ~~L~~fi~~ 362 (699)
+.|.+.+..
T Consensus 143 ~~l~~~I~~ 151 (153)
T TIGR02738 143 AELANRMDE 151 (153)
T ss_pred HHHHHHHHH
Confidence 888777654
No 379
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=53.32 E-value=1e+02 Score=28.74 Aligned_cols=18 Identities=22% Similarity=0.030 Sum_probs=14.9
Q ss_pred hcCCCCCCEEEEEcCCCC
Q 005374 325 TFEVESAPAIVFLKDPGV 342 (699)
Q Consensus 325 kf~V~~~PtIvlfk~~~~ 342 (699)
.|++.++|+++++...++
T Consensus 75 ~~~~~G~Pt~vfl~~~G~ 92 (124)
T cd02955 75 MTGQGGWPLNVFLTPDLK 92 (124)
T ss_pred hcCCCCCCEEEEECCCCC
Confidence 368889999999988664
No 380
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=52.16 E-value=61 Score=34.21 Aligned_cols=76 Identities=17% Similarity=0.256 Sum_probs=48.5
Q ss_pred EEEEEcCC---CCCchHHHHHHHHhccCCceEEEEEccccc---------cHhHHhhcCCCCCCEEEEEcCCCCCce-ee
Q 005374 281 KVIFFSKT---GERASPFVRQISRNYWAYASFAFVLWREEE---------SSIWWNTFEVESAPAIVFLKDPGVKPV-VY 347 (699)
Q Consensus 281 ~vl~f~~~---~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~---------s~~l~~kf~V~~~PtIvlfk~~~~~pv-~y 347 (699)
.++||.++ |....|.++..+..|. +....|+..... ...+++++||+..|++++...+..+.. +-
T Consensus 154 L~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~~pv~ 231 (256)
T TIGR02739 154 LFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKMSPLA 231 (256)
T ss_pred EEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcEEEEe
Confidence 34455433 3345778888888774 454555443221 144889999999999999988755432 23
Q ss_pred cCCCChhHHHH
Q 005374 348 YGSFNNSRLSE 358 (699)
Q Consensus 348 ~g~~~~~~L~~ 358 (699)
.|-++.++|.+
T Consensus 232 ~G~iS~deL~~ 242 (256)
T TIGR02739 232 YGFISQDELKE 242 (256)
T ss_pred eccCCHHHHHH
Confidence 67788877744
No 381
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=51.32 E-value=1.2e+02 Score=27.69 Aligned_cols=43 Identities=7% Similarity=0.033 Sum_probs=30.1
Q ss_pred cHhHHhhcCCCCCCEEEEEcCCCCCc-e--eecCCCChhHHHHHHH
Q 005374 319 SSIWWNTFEVESAPAIVFLKDPGVKP-V--VYYGSFNNSRLSEVME 361 (699)
Q Consensus 319 s~~l~~kf~V~~~PtIvlfk~~~~~p-v--~y~g~~~~~~L~~fi~ 361 (699)
...++..+++.++|+++++-..+.+- + ...|..+.++|...++
T Consensus 65 g~~la~~l~~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~ 110 (116)
T cd02991 65 GYRVSQALRERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLT 110 (116)
T ss_pred HHHHHHHhCCCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHH
Confidence 35699999999999999884322221 2 2488888887766554
No 382
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=50.74 E-value=52 Score=33.65 Aligned_cols=83 Identities=13% Similarity=0.169 Sum_probs=51.7
Q ss_pred EEEEEEcCC---CCCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCCCce-e-----ecCC
Q 005374 280 VKVIFFSKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPV-V-----YYGS 350 (699)
Q Consensus 280 v~vl~f~~~---~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~~pv-~-----y~g~ 350 (699)
++|.++.+. ++.....+.-+|++| ..++|..+..... ..-.+|.....|+|++|+.++--.. + +-.+
T Consensus 162 i~VhIYEdgi~gcealn~~~~cLAAey-P~vKFckikss~~---gas~~F~~n~lP~LliYkgGeLIgNFv~va~qlged 237 (273)
T KOG3171|consen 162 IVVHIYEDGIKGCEALNSSLTCLAAEY-PIVKFCKIKSSNT---GASDRFSLNVLPTLLIYKGGELIGNFVSVAEQLGED 237 (273)
T ss_pred EEEEEecCCCchHHHHhhhHHHhhccC-CceeEEEeeeccc---cchhhhcccCCceEEEeeCCchhHHHHHHHHHHhhh
Confidence 445566532 233444555688877 4788888875443 3556788888999999997653110 0 1223
Q ss_pred CChhHHHHHHHHhhcc
Q 005374 351 FNNSRLSEVMEQNKLQ 366 (699)
Q Consensus 351 ~~~~~L~~fi~~~~~~ 366 (699)
+-..+|..|++.+.++
T Consensus 238 ffa~dle~FL~e~gll 253 (273)
T KOG3171|consen 238 FFAGDLESFLNEYGLL 253 (273)
T ss_pred hhhhhHHHHHHHcCCC
Confidence 4556788888776555
No 383
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=49.93 E-value=14 Score=40.16 Aligned_cols=53 Identities=23% Similarity=0.317 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCC-------ChHHHHHHHHHHHHHcCChhhhcccCcCC
Q 005374 48 YSSVEQVKEAYEKFSSKWNSGEEI-------PSTADFLKIQYAYELLTDPLWKRNYDVYG 100 (699)
Q Consensus 48 ~as~~eIk~ayr~l~~~~HPDk~~-------~~~~~f~~I~~Ay~vL~d~~~R~~YD~~g 100 (699)
.++..+|+.+|+..+...||++.. ...+.+..|.+||.+|++...|...|.+-
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~ 62 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD 62 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 356788999999999999999642 45566999999999999866666777553
No 384
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=49.77 E-value=68 Score=27.30 Aligned_cols=60 Identities=15% Similarity=0.295 Sum_probs=36.7
Q ss_pred CcEEEEEEcCCCCCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCC
Q 005374 278 HKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG 341 (699)
Q Consensus 278 ~~v~vl~f~~~~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~ 341 (699)
..+.+|+++-.. ....++....++ ...+..+...+.....+.+.|+|...|+++++..++
T Consensus 34 ~~v~~v~Vs~d~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~i~~iP~~~lld~~G 93 (95)
T PF13905_consen 34 DDVEFVFVSLDE--DEEEWKKFLKKN--NFPWYNVPFDDDNNSELLKKYGINGIPTLVLLDPDG 93 (95)
T ss_dssp TTEEEEEEE-SS--SHHHHHHHHHTC--TTSSEEEETTTHHHHHHHHHTT-TSSSEEEEEETTS
T ss_pred CCEEEEEEEeCC--CHHHHHHHHHhc--CCCceEEeeCcchHHHHHHHCCCCcCCEEEEECCCC
Confidence 456677666432 234444433333 234556555554457899999999999999997654
No 385
>PF15096 G6B: G6B family
Probab=48.78 E-value=18 Score=35.88 Aligned_cols=23 Identities=26% Similarity=0.673 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhccCCCCCCCCCC
Q 005374 627 ALMSFGTIWLMRGQQRAHPSQSG 649 (699)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~ 649 (699)
|+-..|.+|+.|++.+.||.+.-
T Consensus 138 GLgalG~~ww~rrrspp~p~~p~ 160 (224)
T PF15096_consen 138 GLGALGVVWWLRRRSPPHPPRPL 160 (224)
T ss_pred ccccchheeeeeccCCCCCCCCC
Confidence 44556799999999888876644
No 386
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=46.69 E-value=1.9e+02 Score=31.33 Aligned_cols=102 Identities=10% Similarity=0.167 Sum_probs=60.3
Q ss_pred cccchhhhhhhhhcCCCcEEEEEEcC---C--C---CCchHHHHHHHHhccC--------CceEEEEEccccccHhHHhh
Q 005374 262 YTKESMGKNFLAKTGPHKVKVIFFSK---T--G---ERASPFVRQISRNYWA--------YASFAFVLWREEESSIWWNT 325 (699)
Q Consensus 262 it~~~~~~~Fl~~~~~~~v~vl~f~~---~--~---~~~~~~~~~~A~~~~~--------~~~Fg~V~~~~~~s~~l~~k 325 (699)
.++.+ +..|+...+.|--.+++|+- + | ......+..+|+.++. ++-|+.|... +++++.+.
T Consensus 45 ~n~d~-~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~--e~p~~Fq~ 121 (331)
T KOG2603|consen 45 MNDDK-FSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYD--ESPQVFQQ 121 (331)
T ss_pred ecCcc-hhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEecc--ccHHHHHH
Confidence 45444 78888754445555666642 1 1 1122333446665542 4457777644 36899999
Q ss_pred cCCCCCCEEEEEcCCCCCc---eee---cCCCChhHHHHHHHHhhcc
Q 005374 326 FEVESAPAIVFLKDPGVKP---VVY---YGSFNNSRLSEVMEQNKLQ 366 (699)
Q Consensus 326 f~V~~~PtIvlfk~~~~~p---v~y---~g~~~~~~L~~fi~~~~~~ 366 (699)
+++.+.|++++|++....+ ..+ .-....+.+-+|++.....
T Consensus 122 l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv 168 (331)
T KOG2603|consen 122 LNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKV 168 (331)
T ss_pred hcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhh
Confidence 9999999999997643221 111 1112467788888765444
No 387
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=46.45 E-value=74 Score=40.41 Aligned_cols=86 Identities=16% Similarity=0.200 Sum_probs=56.3
Q ss_pred CcEEEEEE-c---CCCCCchHHHHHHHHhccCC-ceEEEEEcc--cc-----------------------ccHhHHhhcC
Q 005374 278 HKVKVIFF-S---KTGERASPFVRQISRNYWAY-ASFAFVLWR--EE-----------------------ESSIWWNTFE 327 (699)
Q Consensus 278 ~~v~vl~f-~---~~~~~~~~~~~~~A~~~~~~-~~Fg~V~~~--~~-----------------------~s~~l~~kf~ 327 (699)
.++.+|.| . ..|....|.+..+..+|.+. +.+.-|... +. ....+.+.|+
T Consensus 420 GK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~~ 499 (1057)
T PLN02919 420 GKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRELG 499 (1057)
T ss_pred CCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhcC
Confidence 45666655 2 23445678888888888754 333333210 10 1234678999
Q ss_pred CCCCCEEEEEcCCCCCceeecCCCChhHHHHHHHHh
Q 005374 328 VESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN 363 (699)
Q Consensus 328 V~~~PtIvlfk~~~~~pv~y~g~~~~~~L~~fi~~~ 363 (699)
|...|+.+++..+++....+.|+...+.|.+++...
T Consensus 500 V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~ 535 (1057)
T PLN02919 500 VSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAA 535 (1057)
T ss_pred CCccceEEEECCCCeEEEEEecccCHHHHHHHHHHH
Confidence 999999999966565434468888888888888764
No 388
>PF13446 RPT: A repeated domain in UCH-protein
Probab=45.54 E-value=20 Score=28.87 Aligned_cols=44 Identities=14% Similarity=0.218 Sum_probs=31.9
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcC
Q 005374 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLT 88 (699)
Q Consensus 37 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~I~~Ay~vL~ 88 (699)
.+-|+.|||+++.+.+.|-.+|+.... -.| .......+|..++.
T Consensus 5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-~~P-------~~~~~~r~AL~~Ia 48 (62)
T PF13446_consen 5 EEAYEILGIDEDTDDDFIISAFQSKVN-DDP-------SQKDTLREALRVIA 48 (62)
T ss_pred HHHHHHhCcCCCCCHHHHHHHHHHHHH-cCh-------HhHHHHHHHHHHHH
Confidence 357999999999999999999999887 222 23444555555554
No 389
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=44.75 E-value=31 Score=40.17 Aligned_cols=58 Identities=14% Similarity=0.207 Sum_probs=45.3
Q ss_pred CceEEEEEccccc--cHhHHhhcCCCCCCEEEEEcCCCCCceeecCCCChhHHHHHHHHh
Q 005374 306 YASFAFVLWREEE--SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN 363 (699)
Q Consensus 306 ~~~Fg~V~~~~~~--s~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~~~~~~L~~fi~~~ 363 (699)
.+..-.++++..+ ..++.++||+-+.|++++|..++.++....|.++.+.+.++++..
T Consensus 508 ~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 508 DVVLLQADVTANDPAITALLKRLGVFGVPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 3455566665433 367899999999999999998777777678889999999988764
No 390
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=44.46 E-value=1.2e+02 Score=29.57 Aligned_cols=44 Identities=20% Similarity=0.140 Sum_probs=32.7
Q ss_pred HhHHhhcCCCCCCEEEEEcCCCCCceeecCCCChhHHHHHHHHh
Q 005374 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN 363 (699)
Q Consensus 320 ~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~~~~~~L~~fi~~~ 363 (699)
..+.+.|++.+.|+.+++..+++-...+.|.++.+.|.+++.+.
T Consensus 127 ~~~~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~ 170 (173)
T TIGR00385 127 GKLGLDLGVYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPA 170 (173)
T ss_pred CchHHhcCCeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHH
Confidence 45778899988998777765554333457888989998888764
No 391
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=43.25 E-value=1.5e+02 Score=26.18 Aligned_cols=69 Identities=14% Similarity=0.216 Sum_probs=39.1
Q ss_pred CcEEEEEEcCCCCCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCC-CCCceeecCCCCh
Q 005374 278 HKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDP-GVKPVVYYGSFNN 353 (699)
Q Consensus 278 ~~v~vl~f~~~~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~-~~~pv~y~g~~~~ 353 (699)
.+..+.+|.++.....-.++.+|.-++++..|.... .+. .....-. .+.+++|++. .....+|.|.++.
T Consensus 17 kr~iIgYF~~~~~~eY~~f~kvA~~lr~dC~F~v~~-G~~-----~~~~~~~-~~~~i~frp~~~~~~~~y~G~~tn 86 (91)
T cd03070 17 KRNIIGYFESKDSDEYDNFRKVANILRDDCSFLVGF-GDV-----TKPERPP-GDNIIYFPPGHNAPDMVYLGSLTN 86 (91)
T ss_pred CceEEEEEcCCCChhHHHHHHHHHHHhhcCeEEEEe-ccc-----cccccCC-CCCeEEECCCCCCCceEEccCCCC
Confidence 344455776554445566677999999988875432 221 1111122 3455666654 4344779998753
No 392
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=40.78 E-value=36 Score=30.87 Aligned_cols=56 Identities=9% Similarity=0.110 Sum_probs=32.4
Q ss_pred EEEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchh--hhhHHHHhCCCCcccccccccEEEE
Q 005374 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR--LATHLAERKPIGQIFFRRGLPSLVA 222 (699)
Q Consensus 157 lV~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~--~~~~L~~k~~i~~~f~V~gyPTl~~ 222 (699)
+|.|-.+||..|+++...|.+ +.....+-.+|-.++. .+..|.+--+ .+.+|.+++
T Consensus 16 VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg------~~tvP~vFI 73 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTG------QRTVPNVFI 73 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcC------CCCCCEEEE
Confidence 466888999999997777766 3222255555544321 2222333333 348887655
No 393
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=40.40 E-value=1.9e+02 Score=23.94 Aligned_cols=55 Identities=24% Similarity=0.372 Sum_probs=32.7
Q ss_pred HHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCCCCceeecC-CCChhHHHHHHH
Q 005374 297 RQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYG-SFNNSRLSEVME 361 (699)
Q Consensus 297 ~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g-~~~~~~L~~fi~ 361 (699)
+.++..+. +.+-.+.. .+.+++ .+|||.+.|++++ ++ .+.+.| -.+.+.|..||+
T Consensus 21 ~~~~~~~~--i~~ei~~~--~~~~~~-~~ygv~~vPalvI---ng--~~~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 21 KEAAEELG--IEVEIIDI--EDFEEI-EKYGVMSVPALVI---NG--KVVFVGRVPSKEELKELLE 76 (76)
T ss_dssp HHHHHHTT--EEEEEEET--TTHHHH-HHTT-SSSSEEEE---TT--EEEEESS--HHHHHHHHHH
T ss_pred HHHHHhcC--CeEEEEEc--cCHHHH-HHcCCCCCCEEEE---CC--EEEEEecCCCHHHHHHHhC
Confidence 34555552 44433332 234566 9999999999976 33 356788 456677888774
No 394
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=40.27 E-value=80 Score=27.81 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=22.7
Q ss_pred chHHHHHHHHhccCCceEEEEEcccc-ccHhHHhhcCCCCCCEE
Q 005374 292 ASPFVRQISRNYWAYASFAFVLWREE-ESSIWWNTFEVESAPAI 334 (699)
Q Consensus 292 ~~~~~~~~A~~~~~~~~Fg~V~~~~~-~s~~l~~kf~V~~~PtI 334 (699)
..+.+..++..+.+.+.+..+...+. +...+++++++..+|++
T Consensus 39 ~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~ 82 (114)
T cd02967 39 LLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYV 82 (114)
T ss_pred HhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEE
Confidence 34556556655655555554421111 12456777777666764
No 395
>PF08082 PRO8NT: PRO8NT (NUC069), PrP8 N-terminal domain; InterPro: IPR012591 Pre-mRNA-processing-splicing factor 8 is a central component of the spliceosome, which may play a role in aligning the pre-mRNA 5'- and 3'-exons for ligation. It interacts with U5 snRNA, and with pre-mRNA 5'-splice sites in B spliceosomes and 3'-splice sites in C spliceosomes. It is part of the U5 snRNP complex, and of U5.4/6 and U5.U4atac/U6atac snRNP complexes in U2- and U12-dependent spliceosomes, respectively. It is also found in a mRNA splicing-dependent exon junction complex (EJC) with SRRM1 where it interacts with U5 snRNP proteins SNRP116 and WDR57/SPF38 [, ].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=39.35 E-value=27 Score=33.48 Aligned_cols=21 Identities=38% Similarity=0.506 Sum_probs=18.3
Q ss_pred CCCCCCCCccccccccCCCCC
Q 005374 678 PSITDEEPKDAYQMPLLDSDS 698 (699)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~ 698 (699)
..|.|.||-+|.||+|...|+
T Consensus 123 dni~dvep~~~i~~~ld~~~d 143 (152)
T PF08082_consen 123 DNILDVEPLEAIQMELDEEED 143 (152)
T ss_pred hccccCCCCcccccccccccc
Confidence 578999999999999987665
No 396
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=37.33 E-value=69 Score=30.61 Aligned_cols=78 Identities=19% Similarity=0.287 Sum_probs=48.5
Q ss_pred CcEEEEEeccCCCCCCCcchHHHHHHHHhhccc-ceeeeeccchhhhhHHHHhCCCCcccccccccEEEEcCCCCCCCCc
Q 005374 154 KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDC 232 (699)
Q Consensus 154 ~~~lV~FYapwC~hCk~l~p~~~~~A~~L~g~~-~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~f~~g~~~~~~ 232 (699)
..-++.||+|.||-|.. |-+. |+..+ .|..+..++- ..|-++++|. +.-++-=|.++ +|
T Consensus 25 ~~~~~vyksPnCGCC~~----w~~~---mk~~Gf~Vk~~~~~d~---~alK~~~gIp--~e~~SCHT~VI--~G------ 84 (149)
T COG3019 25 ATEMVVYKSPNCGCCDE----WAQH---MKANGFEVKVVETDDF---LALKRRLGIP--YEMQSCHTAVI--NG------ 84 (149)
T ss_pred eeeEEEEeCCCCccHHH----HHHH---HHhCCcEEEEeecCcH---HHHHHhcCCC--hhhccccEEEE--cC------
Confidence 34578899999999965 4443 33322 6666666632 2366777753 33344445443 33
Q ss_pred cccccCCcCHHHHHHHHHHH
Q 005374 233 MTRFEGELSVDAVTDWFATA 252 (699)
Q Consensus 233 ~~~Y~G~rs~~~Iv~fi~k~ 252 (699)
.-.+|-.-+++|..++...
T Consensus 85 -y~vEGHVPa~aI~~ll~~~ 103 (149)
T COG3019 85 -YYVEGHVPAEAIARLLAEK 103 (149)
T ss_pred -EEEeccCCHHHHHHHHhCC
Confidence 2237888889999988765
No 397
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=36.66 E-value=20 Score=37.51 Aligned_cols=40 Identities=20% Similarity=0.364 Sum_probs=29.5
Q ss_pred HhHHhhcCCCCCCEEEEEcCCCCCceeecCCCChhHHHHHH
Q 005374 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM 360 (699)
Q Consensus 320 ~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~~~~~~L~~fi 360 (699)
..+.+++||++.|++++-...+ .+....|-.+.+.|.+++
T Consensus 209 ~~l~~~lGv~GTPaiv~~d~~G-~~~~v~G~~~~~~L~~~l 248 (251)
T PRK11657 209 QKLMDDLGANATPAIYYMDKDG-TLQQVVGLPDPAQLAEIM 248 (251)
T ss_pred HHHHHHcCCCCCCEEEEECCCC-CEEEecCCCCHHHHHHHh
Confidence 4588899999999999886433 333457777778887765
No 398
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=35.46 E-value=3.6e+02 Score=25.53 Aligned_cols=70 Identities=14% Similarity=0.243 Sum_probs=40.3
Q ss_pred hhhhhhhcCCCcEEEEEEcCCCCC----chHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCC
Q 005374 268 GKNFLAKTGPHKVKVIFFSKTGER----ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDP 340 (699)
Q Consensus 268 ~~~Fl~~~~~~~v~vl~f~~~~~~----~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~ 340 (699)
+++-+.+ +..++.|+=|+...+. ..-.+...|...++.+....|... +.++..+-|++...|++++|-.+
T Consensus 14 VdqaI~~-t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~Iylvdid--eV~~~~~~~~l~~p~tvmfFfn~ 87 (142)
T KOG3414|consen 14 VDQAILS-TEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDID--EVPDFVKMYELYDPPTVMFFFNN 87 (142)
T ss_pred HHHHHhc-ccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecc--hhhhhhhhhcccCCceEEEEEcC
Confidence 4444433 3467888888765431 112233345444444444444322 34789999999999998877543
No 399
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=34.88 E-value=1.4e+02 Score=31.45 Aligned_cols=68 Identities=13% Similarity=0.101 Sum_probs=43.9
Q ss_pred CCchHHHHHHHHhccCCceEEEEEccccc---------cHhHHhhcCCCCCCEEEEEcCCCCCce-eecCCCChhHHHHH
Q 005374 290 ERASPFVRQISRNYWAYASFAFVLWREEE---------SSIWWNTFEVESAPAIVFLKDPGVKPV-VYYGSFNNSRLSEV 359 (699)
Q Consensus 290 ~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~---------s~~l~~kf~V~~~PtIvlfk~~~~~pv-~y~g~~~~~~L~~f 359 (699)
....|.++..+..|. +...-|+..... ....++++||+.+|++++...+..+.. +-.|-++.++|.+=
T Consensus 159 ~~~aPil~~fa~~yg--~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~pv~~G~iS~deL~~R 236 (248)
T PRK13703 159 GQLAQVINDFRDTYG--LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVRPLSYGFITQDDLAKR 236 (248)
T ss_pred HHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEEEEeeccCCHHHHHHH
Confidence 446788888888774 444444432110 133678999999999999988764432 23677888777543
No 400
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=34.52 E-value=1e+02 Score=31.19 Aligned_cols=61 Identities=11% Similarity=0.190 Sum_probs=42.6
Q ss_pred CcEEEEEEcCC---CCCchHHHHHHHHhccCCceEEEEEccccccHhHHhhcCCCCCCEEEEEcCCC
Q 005374 278 HKVKVIFFSKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG 341 (699)
Q Consensus 278 ~~v~vl~f~~~---~~~~~~~~~~~A~~~~~~~~Fg~V~~~~~~s~~l~~kf~V~~~PtIvlfk~~~ 341 (699)
.+|.+-|+-+. |+-...-+..+|..+. ..+|..|.... .+-|+.+++|.-.|+|++|+++-
T Consensus 85 ~kVVcHFY~~~f~RCKimDkhLe~LAk~h~-eTrFikvnae~--~PFlv~kL~IkVLP~v~l~k~g~ 148 (211)
T KOG1672|consen 85 EKVVCHFYRPEFFRCKIMDKHLEILAKRHV-ETRFIKVNAEK--APFLVTKLNIKVLPTVALFKNGK 148 (211)
T ss_pred ceEEEEEEcCCCcceehHHHHHHHHHHhcc-cceEEEEeccc--CceeeeeeeeeEeeeEEEEEcCE
Confidence 45555566432 3334555666887765 45788886543 57899999999999999999754
No 401
>PF11522 Pik1: Yeast phosphatidylinositol-4-OH kinase Pik1; InterPro: IPR021601 Pik1 is a regulator of membrane traffic and participates in the mating-pheromone signal-transduction cascade. The protein is localised to the nucleus and cytoplasm in the Golgi. Pik1 is thought to have an actin-independent role in membrane transport []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2JU0_B.
Probab=33.51 E-value=63 Score=25.50 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhhccC----------CCchhHHHHHHHHHHHH
Q 005374 601 QRIRNIMGQCYDYLG----------DPRIGPALLLAALMSFG 632 (699)
Q Consensus 601 ~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~ 632 (699)
+|+++=++.+-+..+ .|.+.|+|+++|.|..+
T Consensus 8 RRv~NklQ~ilFn~~~~~~~~~~k~~ENv~PalVL~s~v~as 49 (51)
T PF11522_consen 8 RRVINKLQHILFNTSSSDISKQQKFRENVLPALVLCSAVLAS 49 (51)
T ss_dssp HHHHHHHT--SS-SS-----TT--SS-SHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCccccccccccccccchHHHHHHHHHHh
Confidence 555555555555555 47799999999977654
No 402
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=33.04 E-value=92 Score=30.41 Aligned_cols=56 Identities=14% Similarity=0.180 Sum_probs=42.4
Q ss_pred CCCcEEEEEe-ccCCCCCCCcchHHHHHHHHhhccc-ceeeeeccchhhhhHHHHhCC
Q 005374 152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLATHLAERKP 207 (699)
Q Consensus 152 ~~~~~lV~FY-apwC~hCk~l~p~~~~~A~~L~g~~-~va~Vdc~~~~~~~~L~~k~~ 207 (699)
.++.+++.|| ..+++-|..=+-.|++.-.+++... .|--|..+....+..++++++
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~ 86 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHG 86 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhC
Confidence 4567777888 5678889888888998888887754 666666665556677999986
No 403
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=30.53 E-value=18 Score=35.65 Aligned_cols=28 Identities=7% Similarity=0.012 Sum_probs=23.0
Q ss_pred EEeccCCCCCCCcchHHHHHHHHhhccc
Q 005374 159 QVYSDGSYLCGQFSGAWKTIAALLEGIA 186 (699)
Q Consensus 159 ~FYapwC~hCk~l~p~~~~~A~~L~g~~ 186 (699)
.|..|.|+.|-.++|.|.++..++.+.+
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i 29 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKI 29 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcE
Confidence 5899999999999999999999998755
No 404
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=29.00 E-value=71 Score=30.00 Aligned_cols=35 Identities=17% Similarity=0.336 Sum_probs=26.5
Q ss_pred HHHhCCCCcccccccccEEEEcCCCCCCCCccccccCCcCHHHHHHHHHH
Q 005374 202 LAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT 251 (699)
Q Consensus 202 L~~k~~i~~~f~V~gyPTl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k 251 (699)
.+++.+ |.+.|||++ +|. .+.|..+.++|.++|.+
T Consensus 128 ~~~~~~------i~~tPt~~i--nG~-------~~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 128 LARQLG------ITGTPTFFI--NGK-------YVVGPYTIEELKELIDK 162 (162)
T ss_dssp HHHHHT-------SSSSEEEE--TTC-------EEETTTSHHHHHHHHHH
T ss_pred HHHHcC------CccccEEEE--CCE-------EeCCCCCHHHHHHHHcC
Confidence 567777 679999988 663 35888999999988753
No 405
>PHA02125 thioredoxin-like protein
Probab=28.62 E-value=1.3e+02 Score=24.94 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=19.3
Q ss_pred eEEEEEccccccHhHHhhcCCCCCCEEE
Q 005374 308 SFAFVLWREEESSIWWNTFEVESAPAIV 335 (699)
Q Consensus 308 ~Fg~V~~~~~~s~~l~~kf~V~~~PtIv 335 (699)
.|..|. ..+..+++++|+|.+.||++
T Consensus 26 ~~~~vd--~~~~~~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 26 TYVDVD--TDEGVELTAKHHIRSLPTLV 51 (75)
T ss_pred eEEeee--CCCCHHHHHHcCCceeCeEE
Confidence 344454 33357899999999999987
No 406
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=28.41 E-value=85 Score=28.83 Aligned_cols=44 Identities=9% Similarity=0.021 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCC---CCC----hHHHHHHHHHHHHHcCCh
Q 005374 47 PYSSVEQVKEAYEKFSSKWNSGE---EIP----STADFLKIQYAYELLTDP 90 (699)
Q Consensus 47 ~~as~~eIk~ayr~l~~~~HPDk---~~~----~~~~f~~I~~Ay~vL~d~ 90 (699)
+..+..+++.|.|.+-++.|||. .|. +++-++.++.-.+.|..+
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 45677899999999999999994 221 334477888777777654
No 407
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=27.92 E-value=37 Score=33.46 Aligned_cols=37 Identities=27% Similarity=0.336 Sum_probs=14.2
Q ss_pred HHHHhCCCCcccccccccEEEEcCCCCCCCCccccccCCcCHHHH
Q 005374 201 HLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAV 245 (699)
Q Consensus 201 ~L~~k~~i~~~f~V~gyPTl~~f~~g~~~~~~~~~Y~G~rs~~~I 245 (699)
.++++++ |+++||+++|...... .....+|..+.+.+
T Consensus 138 ~la~~m~------I~~~Ptlvi~~~~~~~--~g~~i~g~~~~~~~ 174 (176)
T PF13743_consen 138 QLAREMG------ITGFPTLVIFNENNEE--YGILIEGYYSYEVY 174 (176)
T ss_dssp HHHHHTT-------SSSSEEEEE----------------------
T ss_pred HHHHHcC------CCCCCEEEEEeccccc--cccccccccccccc
Confidence 3888888 7799999999832211 23444565554433
No 408
>PF03988 DUF347: Repeat of Unknown Function (DUF347) ; InterPro: IPR007136 This repeat is found as four tandem repeats in a family of bacterial membrane proteins. Each repeat contains two transmembrane regions and a conserved tryptophan.
Probab=27.48 E-value=1e+02 Score=24.51 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=19.5
Q ss_pred HHHHhhhcc----CCCchhHHHHHHHHHHHHHHHhhccCCCCCC
Q 005374 606 IMGQCYDYL----GDPRIGPALLLAALMSFGTIWLMRGQQRAHP 645 (699)
Q Consensus 606 ~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 645 (699)
+.+.+.|++ +-+.....+++++++..-.+++.++++ +||
T Consensus 13 lGt~~~D~l~~~lglg~~~~~~~~~~~l~~~~~~~~~~~~-~~p 55 (55)
T PF03988_consen 13 LGTTAGDFLSKTLGLGYLISTLIFAALLAVVLALWYRSKR-YRP 55 (55)
T ss_pred hHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHhc-cCC
Confidence 445555544 445555566666655444333333333 455
No 409
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=26.56 E-value=3.3e+02 Score=25.72 Aligned_cols=44 Identities=30% Similarity=0.482 Sum_probs=30.2
Q ss_pred cHhHHhhcCCCCCCEEEEEcCCC----------CCceeecCCCChhHHHHHHHH
Q 005374 319 SSIWWNTFEVESAPAIVFLKDPG----------VKPVVYYGSFNNSRLSEVMEQ 362 (699)
Q Consensus 319 s~~l~~kf~V~~~PtIvlfk~~~----------~~pv~y~g~~~~~~L~~fi~~ 362 (699)
++.+.++|+|+..|++|+.+++. .......|+.+.+.-.+.+..
T Consensus 60 dP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~ 113 (130)
T TIGR02742 60 DPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQ 113 (130)
T ss_pred ChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHH
Confidence 47899999999999999998753 011123677776554444443
No 410
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=26.36 E-value=3.2e+02 Score=27.31 Aligned_cols=70 Identities=11% Similarity=0.193 Sum_probs=44.9
Q ss_pred CchHHHHHHHHhccCCceEEEEEcccc-----------ccHhHHhhcCC--CCCCEEEEEcCCCCCc-eeecCCCChhHH
Q 005374 291 RASPFVRQISRNYWAYASFAFVLWREE-----------ESSIWWNTFEV--ESAPAIVFLKDPGVKP-VVYYGSFNNSRL 356 (699)
Q Consensus 291 ~~~~~~~~~A~~~~~~~~Fg~V~~~~~-----------~s~~l~~kf~V--~~~PtIvlfk~~~~~p-v~y~g~~~~~~L 356 (699)
...|.++.++.+|. +.+.-|..... ....+...|++ ...|+.+++..++... .++.|.++.+.|
T Consensus 86 ~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~~~~~G~~~~~~L 163 (181)
T PRK13728 86 QFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEALPLLQGATDAAGF 163 (181)
T ss_pred HHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEEEEEECCCCHHHH
Confidence 35566777777763 44444443322 11346778995 5799999998777653 357898888877
Q ss_pred HHHHHH
Q 005374 357 SEVMEQ 362 (699)
Q Consensus 357 ~~fi~~ 362 (699)
.+.|..
T Consensus 164 ~~~I~~ 169 (181)
T PRK13728 164 MARMDT 169 (181)
T ss_pred HHHHHH
Confidence 766654
No 411
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=25.11 E-value=99 Score=28.48 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=25.2
Q ss_pred HHHHhCCCCcccccccccEEEEcCCCCCCCCccccccCCcCHHHHHHHH
Q 005374 201 HLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (699)
Q Consensus 201 ~L~~k~~i~~~f~V~gyPTl~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fi 249 (699)
.++++++ |.|+||+++ +| ..+.|..+.+.|.+.+
T Consensus 120 ~~~~~~g------i~gtPt~~v--~g-------~~~~G~~~~~~l~~~i 153 (154)
T cd03023 120 QLARALG------ITGTPAFII--GD-------TVIPGAVPADTLKEAI 153 (154)
T ss_pred HHHHHcC------CCcCCeEEE--CC-------EEecCCCCHHHHHHHh
Confidence 3677777 779999887 34 3568888888887754
No 412
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=24.53 E-value=93 Score=25.57 Aligned_cols=69 Identities=19% Similarity=0.195 Sum_probs=42.5
Q ss_pred EEeccCCCCCCCcchHHHHHHHHhhccc-ceeeeeccchhhhhHHHHhCCCCcccccccccEEEEcCCCCCCCCcccccc
Q 005374 159 QVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFE 237 (699)
Q Consensus 159 ~FYapwC~hCk~l~p~~~~~A~~L~g~~-~va~Vdc~~~~~~~~L~~k~~i~~~f~V~gyPTl~~f~~g~~~~~~~~~Y~ 237 (699)
.++.++|+.|.+.. ++-.++|+. .+-.|+..+. ...+.+..+.+ .+|+|. .+|..
T Consensus 1 Ly~~~~Sp~~~kv~-----~~l~~~~i~~~~~~v~~~~~--~~~~~~~~p~~------~vPvL~--~~g~~--------- 56 (75)
T PF13417_consen 1 LYGFPGSPYSQKVR-----LALEEKGIPYELVPVDPEEK--RPEFLKLNPKG------KVPVLV--DDGEV--------- 56 (75)
T ss_dssp EEEETTSHHHHHHH-----HHHHHHTEEEEEEEEBTTST--SHHHHHHSTTS------BSSEEE--ETTEE---------
T ss_pred CCCcCCChHHHHHH-----HHHHHcCCeEEEeccCcccc--hhHHHhhcccc------cceEEE--ECCEE---------
Confidence 36788999887654 444455553 5555554432 23355555533 899997 34421
Q ss_pred CCcCHHHHHHHHHHH
Q 005374 238 GELSVDAVTDWFATA 252 (699)
Q Consensus 238 G~rs~~~Iv~fi~k~ 252 (699)
-.+...|++|+.++
T Consensus 57 -l~dS~~I~~yL~~~ 70 (75)
T PF13417_consen 57 -LTDSAAIIEYLEER 70 (75)
T ss_dssp -EESHHHHHHHHHHH
T ss_pred -EeCHHHHHHHHHHH
Confidence 13678899999887
No 413
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=24.53 E-value=3.2e+02 Score=24.87 Aligned_cols=21 Identities=24% Similarity=0.574 Sum_probs=19.4
Q ss_pred cHhHHhhcCCCCCCEEEEEcC
Q 005374 319 SSIWWNTFEVESAPAIVFLKD 339 (699)
Q Consensus 319 s~~l~~kf~V~~~PtIvlfk~ 339 (699)
.+.+.++|+|+..|++++-++
T Consensus 60 dP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 60 DPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred ChhHHhhCCceEcCEEEEEcC
Confidence 478999999999999999987
No 414
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=24.41 E-value=1.2e+02 Score=30.00 Aligned_cols=44 Identities=14% Similarity=0.144 Sum_probs=32.8
Q ss_pred HhHHhhcCCCCCCEEEEEcCCCCCceeecCCCChhHHHHHHHHh
Q 005374 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN 363 (699)
Q Consensus 320 ~~l~~kf~V~~~PtIvlfk~~~~~pv~y~g~~~~~~L~~fi~~~ 363 (699)
..+...|+|.+.|+.+++...++-...+.|.++.+.|.++|+.-
T Consensus 132 ~~~~~~~gv~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~ 175 (185)
T PRK15412 132 GMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPL 175 (185)
T ss_pred ccHHHhcCCCcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHH
Confidence 34677899999998888866565444568888888888877653
No 415
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=23.88 E-value=2.3e+02 Score=30.83 Aligned_cols=59 Identities=22% Similarity=0.258 Sum_probs=42.5
Q ss_pred CCCCccCcccccCcCC-CCCHHHHHHHHHHHHHhc-------CCCCCC------ChHHHHHHHHHHHHHcCCh
Q 005374 32 PRSFPPSHYDALGIKP-YSSVEQVKEAYEKFSSKW-------NSGEEI------PSTADFLKIQYAYELLTDP 90 (699)
Q Consensus 32 ~~~~~~d~Y~vLgv~~-~as~~eIk~ayr~l~~~~-------HPDk~~------~~~~~f~~I~~Ay~vL~d~ 90 (699)
......++++-||++. ..+.+|+.+-.++++.+. ++|.+. ...+.+.++.+||+.|++.
T Consensus 77 lNY~R~pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l~~~ 149 (318)
T PF12725_consen 77 LNYYRPPLSERLGLETEEYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENLAER 149 (318)
T ss_pred hhcCCcCHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHHh
Confidence 3445678889999997 889999888777666554 344321 2366699999999988864
No 416
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=23.55 E-value=2e+02 Score=23.75 Aligned_cols=73 Identities=11% Similarity=0.073 Sum_probs=36.1
Q ss_pred EEEeccCCCCCCCcchHHHHHHHHhhcccceeeeeccchh-hhhHHHHhCCCCcccccccccEEEEcCCCCCCCCccccc
Q 005374 158 IQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-LATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF 236 (699)
Q Consensus 158 V~FYapwC~hCk~l~p~~~~~A~~L~g~~~va~Vdc~~~~-~~~~L~~k~~i~~~f~V~gyPTl~~f~~g~~~~~~~~~Y 236 (699)
..++.++|+.|.+..-..+ ..|. .+-.++..... ....+-+..+. ..+|+|+.-.+|. .
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~-----~~gi-~y~~~~v~~~~~~~~~~~~~~p~------~~vP~l~~~~~~~------~-- 62 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLT-----ELEL-DVILYPCPKGSPKRDKFLEKGGK------VQVPYLVDPNTGV------Q-- 62 (77)
T ss_pred eEecCCCCchHHHHHHHHH-----HcCC-cEEEEECCCChHHHHHHHHhCCC------CcccEEEeCCCCe------E--
Confidence 4567789999976442211 2232 23334443221 11223233332 3899986422221 1
Q ss_pred cCCcCHHHHHHHHHHH
Q 005374 237 EGELSVDAVTDWFATA 252 (699)
Q Consensus 237 ~G~rs~~~Iv~fi~k~ 252 (699)
-.....|++|+.+.
T Consensus 63 --l~es~~I~~yL~~~ 76 (77)
T cd03041 63 --MFESADIVKYLFKT 76 (77)
T ss_pred --EEcHHHHHHHHHHh
Confidence 14567888888654
No 417
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=22.50 E-value=2.1e+02 Score=25.40 Aligned_cols=31 Identities=16% Similarity=0.316 Sum_probs=21.7
Q ss_pred HhcCCCeEEEEEEeCc------chHHHHHHhcccccc
Q 005374 453 VAFRNKRLTFAWLDGE------AQDRYCSFYLFSETS 483 (699)
Q Consensus 453 ~~~k~~~l~F~wvd~~------~q~~f~~~fl~~~~~ 483 (699)
.+|.++.+.|.|+|.. ..++|++.....+..
T Consensus 31 RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~f 67 (93)
T PF07315_consen 31 RKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELF 67 (93)
T ss_dssp HH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-
T ss_pred CcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccc
Confidence 3899999999999994 234788877776665
No 418
>PF14946 DUF4501: Domain of unknown function (DUF4501)
Probab=21.59 E-value=1e+02 Score=30.12 Aligned_cols=45 Identities=24% Similarity=0.466 Sum_probs=25.7
Q ss_pred ccCCCchhHHHHHHH-HHHHH-------HHHhhccCCC------CCCCCCCCCCCCCCc
Q 005374 613 YLGDPRIGPALLLAA-LMSFG-------TIWLMRGQQR------AHPSQSGQPGPSANE 657 (699)
Q Consensus 613 ~~~~~~~~~~l~~~~-~~~~~-------~~~~~~~~~~------~~~~~~~~~~~~~~~ 657 (699)
+++-|++-.-|+||- |||.| -++|+|+++- ..-...=||++...|
T Consensus 83 ~~g~P~vAASL~LgTffIS~~LilSvA~FFYLKrs~kLP~vfYrrnKA~alQP~EaAaM 141 (180)
T PF14946_consen 83 HTGGPQVAASLFLGTFFISLGLILSVASFFYLKRSSKLPHVFYRRNKAPALQPSEAAAM 141 (180)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHhhheeecccccCCccccccccccccCCcchhcc
Confidence 555566644455555 55544 4567777631 244555677776666
Done!