Query 005375
Match_columns 699
No_of_seqs 311 out of 2173
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 23:34:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005375.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005375hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vv5_A MSCS, small-conductance 100.0 1.9E-42 6.4E-47 363.1 33.0 243 157-416 35-278 (286)
2 3udc_A Small-conductance mecha 100.0 2.9E-40 9.9E-45 346.3 38.0 215 189-417 63-278 (285)
3 3udc_A Small-conductance mecha 61.4 1.5E+02 0.005 30.3 14.8 30 332-362 251-280 (285)
4 2e6z_A Transcription elongatio 60.3 9.9 0.00034 30.2 4.3 46 253-300 6-56 (59)
5 1nz9_A Transcription antitermi 56.8 30 0.001 26.9 6.6 26 253-279 3-30 (58)
6 2vv5_A MSCS, small-conductance 51.1 1.9E+02 0.0066 29.4 13.5 13 332-344 252-264 (286)
7 2do3_A Transcription elongatio 49.8 41 0.0014 27.9 6.5 44 251-295 14-59 (69)
8 3cnr_A Type IV fimbriae assemb 33.5 28 0.00095 31.5 3.3 20 245-264 32-51 (117)
9 3exz_A MAOC-like dehydratase; 26.1 76 0.0026 29.0 5.1 16 248-263 85-100 (154)
10 3h0l_B Aspartyl/glutamyl-tRNA( 25.5 4E+02 0.014 29.6 11.5 151 241-407 86-245 (478)
11 4a2n_B Isoprenylcysteine carbo 23.7 2.7E+02 0.0091 26.8 8.7 20 218-237 73-92 (194)
12 1mww_A Hypothetical protein HI 22.7 2.9E+02 0.0098 24.2 8.1 95 325-430 10-114 (128)
13 3p8b_B Transcription antitermi 22.6 63 0.0021 29.9 3.7 28 252-280 89-118 (152)
14 4b6m_A Tubulin-specific chaper 22.5 77 0.0026 27.1 3.9 25 253-279 4-28 (84)
15 3ip4_B Aspartyl/glutamyl-tRNA( 21.8 4.5E+02 0.015 29.2 10.9 155 241-412 84-247 (483)
16 1q6w_A Monoamine oxidase regul 21.2 2E+02 0.0069 26.0 6.9 20 244-263 96-115 (161)
17 2cp0_A Clipr-59 protein, clipr 20.9 52 0.0018 28.8 2.6 29 249-280 11-39 (95)
18 4hpv_A S-adenosylmethionine sy 20.1 5.5E+02 0.019 27.9 10.8 79 318-402 164-251 (407)
No 1
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=100.00 E-value=1.9e-42 Score=363.12 Aligned_cols=243 Identities=17% Similarity=0.240 Sum_probs=219.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHh
Q 005375 157 STVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAG 236 (699)
Q Consensus 157 liIl~~~~ll~~li~~i~~~l~~~~~~~~~r~~~i~~i~~ii~iii~via~iiiL~~lGv~i~~lla~lGi~glalgfA~ 236 (699)
+++++++|++.+++..+.+.+.++.. .+.....++.+++++++|+++++++|..+|++++++++++|++|+++|||+
T Consensus 35 ~~i~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~i~~i~~~~~l~~~gi~~~~l~a~~g~~g~aig~a~ 111 (286)
T 2vv5_A 35 LAIIIVGLIIARMISNAVNRLMISRK---IDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGLAL 111 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 34456678888888776655444422 234456789999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhhhhccCCccCCcEEEEeecCCCeeEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEeccCCCceEE
Q 005375 237 REIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRI 316 (699)
Q Consensus 237 qd~l~Ni~aGi~I~~~rPfrIGD~I~Iki~~~~~~G~VeeIgL~sTT~IRt~Dg~~v~IPNs~l~s~~I~N~Sr~~~~ri 316 (699)
|++++|++||++|+++|||++||||++ ++..|+|++|+|++ |++|++||+.++|||+.+.++.|+|||+.+.+|+
T Consensus 112 q~~l~n~~sGi~i~~~~pf~vGD~I~i----~g~~G~V~~I~l~~-T~i~t~dg~~v~IPNs~l~~~~i~N~s~~~~~r~ 186 (286)
T 2vv5_A 112 QGSLSNLAAGVLLVMFRPFRAGEYVDL----GGVAGTVLSVQIFS-TTMRTADGKIIVIPNGKIIAGNIINFSREPVRRN 186 (286)
T ss_dssp THHHHHHHHHHHHHTTCSSCTTCEEES----SSCEEEEEEECSSE-EEEECTTSCEEEEEHHHHHTSCEEESSSSSEEEE
T ss_pred HHHHHHHHhhhHHHhcCCccCCCEEEE----CCEEEEEEEEEeEE-EEEEeCCCCEEEechHHHhhCceEECCCCCcEEE
Confidence 999999999999999999999999999 68999999999999 9999999999999999999999999999988899
Q ss_pred EEEEEecc-CCHHHHHHHHHHHHHHHHhCCCccccccceEEEEEeeCCCCceEEEEEEEEEecCChhhHHHHHHHHHHHH
Q 005375 317 KTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDL 395 (699)
Q Consensus 317 ~i~l~I~y-td~ekv~~i~~~I~e~L~s~p~v~~~~~~p~V~v~~~~~~~~sl~i~V~~~v~~~d~~~~~~vr~~I~~~I 395 (699)
.+.++++| +|++++++ .+.++++++|.+..++ .|.|.+.++++ ++++++++||+++. +|+.+|+++++++
T Consensus 187 ~~~v~v~y~~d~~~v~~---~l~~~~~~~~~vl~~p-~p~v~v~~~~~--~~i~~~v~~~~~~~---~~~~~~~~l~~~i 257 (286)
T 2vv5_A 187 EFIIGVAYDSDIDQVKQ---ILTNIIQSEDRILKDR-EMTVRLNELGA--SSINFVVRVWSNSG---DLQNVYWDVLERI 257 (286)
T ss_dssp EEEEEECTTSCHHHHHH---HHHHHHHHCTTBCTTS-CEEEEEEEECS--SSEEEEEEEEEETT---THHHHHHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHH---HHHHHHHhCcccccCC-CCEEEEEEecC--CeEEEEEEEEEccc---hHHHHHHHHHHHH
Confidence 99999999 99999988 5778899999998877 78999999985 79999999999985 4689999999999
Q ss_pred HHHHHHCCCccCCCcEEEEEe
Q 005375 396 LRVISHHRARLATPIRTVQKI 416 (699)
Q Consensus 396 l~~~~e~GIe~a~P~rtv~~~ 416 (699)
+++|+++||++|||+|++|..
T Consensus 258 ~~~~~~~gI~ip~P~~~v~~~ 278 (286)
T 2vv5_A 258 KREFDAAGISFPYPQMDVNFK 278 (286)
T ss_dssp HHHHHHHTCCCCCCEEEEEEE
T ss_pred HHHHHHCCCcCCCCceEEEec
Confidence 999999999999999999864
No 2
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=100.00 E-value=2.9e-40 Score=346.25 Aligned_cols=215 Identities=17% Similarity=0.264 Sum_probs=191.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhccCCccCCcEEEEeecCC
Q 005375 189 MGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGY 268 (699)
Q Consensus 189 ~~i~~i~~ii~iii~via~iiiL~~lGv~i~~lla~lGi~glalgfA~qd~l~Ni~aGi~I~~~rPfrIGD~I~Iki~~~ 268 (699)
....++++++++++|+++++++|..+|++++++++++|++|+++|||+|++++|++||++|+++|||++||||++ +
T Consensus 63 tl~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~l~a~~g~~g~aig~a~q~~l~n~~~Gi~i~~~~pf~vGD~I~i----~ 138 (285)
T 3udc_A 63 TLTSLTKNAVRYIIYFLAGASILKLFNIDMTSLLAVAGIGSLAIGFGAQNLVKDMISGFFIIFEDQFSVGDYVTI----N 138 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTSCCTTCEEEE----T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCCCEEEE----C
Confidence 456789999999999999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred CeeEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEeccCCCceEEEEEEEecc-CCHHHHHHHHHHHHHHHHhCCCc
Q 005375 269 EVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQV 347 (699)
Q Consensus 269 ~~~G~VeeIgL~sTT~IRt~Dg~~v~IPNs~l~s~~I~N~Sr~~~~ri~i~l~I~y-td~ekv~~i~~~I~e~L~s~p~v 347 (699)
+.+|+|++|++++ |++|++||+.++|||+.+ ..++|||+. ..|..+.+.++| +|.++++++++++.+.+.+.+..
T Consensus 139 ~~~G~V~~I~l~~-T~i~t~d~~~v~iPN~~l--~~i~N~s~~-~~~~~~~v~v~~~~d~~~v~~~l~~i~~~~~~~~~~ 214 (285)
T 3udc_A 139 GISGTVEEIGLRV-TKIRGFSDGLHIIPNGEI--KMVTNLTKD-SMMAVVNIAFPIDEDVDKIIEGLQEICEEVKKSRDD 214 (285)
T ss_dssp TEEEEEEEECSSE-EEEEETTTEEEEEEGGGC--SCEEECSSS-CEEEEEEEEEETTSCHHHHHHHHHHHHHHHHHHCSS
T ss_pred CEEEEEEEeeeeE-EEEecCCCCEEEeccccc--ccccccCCC-CceEEEEEeeecCCCHHHHHHHHHHHHHHHHhcccc
Confidence 8999999999999 999999999999999999 469999985 455668999999 99999998877766555444333
Q ss_pred cccccceEEEEEeeCCCCceEEEEEEEEEecCChhhHHHHHHHHHHHHHHHHHHCCCccCCCcEEEEEee
Q 005375 348 EQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIF 417 (699)
Q Consensus 348 ~~~~~~p~V~v~~~~~~~~sl~i~V~~~v~~~d~~~~~~vr~~I~~~Il~~~~e~GIe~a~P~rtv~~~~ 417 (699)
..++ ++.+.+.++++ +++.++++||+++.+ ++.++++++++|+++|+++||++|||+|+||+..
T Consensus 215 ~~~~-~~~v~~~~~~~--s~i~~~v~~~~~~~~---~~~~~~~l~~~I~~~f~~~gI~ipfP~~~v~~~~ 278 (285)
T 3udc_A 215 LIEG-PTVLGITDMQD--SKLVIMVYAKTQPMQ---KWAVERDIRYRVKKMFDQKNISFPYPQMDVNFKR 278 (285)
T ss_dssp BSSC-CEEEEEEEEET--TEEEEEEEEEESTTC---HHHHHHHHHHHHHHHHHHTTCCCCCCCCEEEEEE
T ss_pred cccC-cccccccccCC--CEEEEEEEEEECcch---HHHHHHHHHHHHHHHHHHCCCcCcCCCEEEEeCc
Confidence 3333 46788999995 799999999998754 5889999999999999999999999999999654
No 3
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=61.42 E-value=1.5e+02 Score=30.25 Aligned_cols=30 Identities=10% Similarity=0.100 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhCCCccccccceEEEEEeeC
Q 005375 332 SIVADMRKVLAKNPQVEQQRLHRRVFLDNIN 362 (699)
Q Consensus 332 ~i~~~I~e~L~s~p~v~~~~~~p~V~v~~~~ 362 (699)
++...+.+.++++.-...-| +..+++.+..
T Consensus 251 ~l~~~I~~~f~~~gI~ipfP-~~~v~~~~~~ 280 (285)
T 3udc_A 251 DIRYRVKKMFDQKNISFPYP-QMDVNFKRVK 280 (285)
T ss_dssp HHHHHHHHHHHHTTCCCCCC-CCEEEEEEC-
T ss_pred HHHHHHHHHHHHCCCcCcCC-CEEEEeCcCC
Confidence 44556666666653222222 3346665543
No 4
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.27 E-value=9.9 Score=30.22 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=29.1
Q ss_pred CCccCCcEEEEeecC--CCeeEEEEEEeceeeEEEEe---cCCcEEEEecccc
Q 005375 253 RPFVLNEWIQTKIEG--YEVSGTVEHVGWWSPTIVRG---EDREAVHIPNHKF 300 (699)
Q Consensus 253 rPfrIGD~I~Iki~~--~~~~G~VeeIgL~sTT~IRt---~Dg~~v~IPNs~l 300 (699)
-.|.+||.|+| ++| .+..|+|+++.--. .++.- .-.+.+-+|++.+
T Consensus 6 ~~f~~GD~V~V-~~Gpf~g~~G~V~evd~e~-v~V~v~~fg~~tpvel~~~qv 56 (59)
T 2e6z_A 6 SGFQPGDNVEV-CEGELINLQGKILSVDGNK-ITIMPKHEDLKDMLEFPAQEL 56 (59)
T ss_dssp SSCCTTSEEEE-CSSTTTTCEEEECCCBTTE-EEEEECCSSCCSCEEEETTTE
T ss_pred ccCCCCCEEEE-eecCCCCCEEEEEEEeCCE-EEEEEEecCCCceEEEcHHHE
Confidence 46999999999 333 46889999998643 33332 1133555555543
No 5
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=56.84 E-value=30 Score=26.90 Aligned_cols=26 Identities=19% Similarity=0.371 Sum_probs=21.0
Q ss_pred CCccCCcEEEEeecC--CCeeEEEEEEec
Q 005375 253 RPFVLNEWIQTKIEG--YEVSGTVEHVGW 279 (699)
Q Consensus 253 rPfrIGD~I~Iki~~--~~~~G~VeeIgL 279 (699)
-+|++||.|+| ++| .+..|.|++++.
T Consensus 3 ~~~~~Gd~V~V-~~Gpf~g~~g~v~~v~~ 30 (58)
T 1nz9_A 3 VAFREGDQVRV-VSGPFADFTGTVTEINP 30 (58)
T ss_dssp CSCCTTCEEEE-CSGGGTTCEEEEEEEET
T ss_pred cccCCCCEEEE-eecCCCCcEEEEEEEcC
Confidence 36899999999 343 368999999976
No 6
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=51.12 E-value=1.9e+02 Score=29.38 Aligned_cols=13 Identities=0% Similarity=0.312 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHhC
Q 005375 332 SIVADMRKVLAKN 344 (699)
Q Consensus 332 ~i~~~I~e~L~s~ 344 (699)
++.+.+.+.++++
T Consensus 252 ~l~~~i~~~~~~~ 264 (286)
T 2vv5_A 252 DVLERIKREFDAA 264 (286)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC
Confidence 3445566666654
No 7
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=49.82 E-value=41 Score=27.85 Aligned_cols=44 Identities=11% Similarity=0.151 Sum_probs=28.3
Q ss_pred ccCCccCCcEEEEeecC--CCeeEEEEEEeceeeEEEEecCCcEEEE
Q 005375 251 ATRPFVLNEWIQTKIEG--YEVSGTVEHVGWWSPTIVRGEDREAVHI 295 (699)
Q Consensus 251 ~~rPfrIGD~I~Iki~~--~~~~G~VeeIgL~sTT~IRt~Dg~~v~I 295 (699)
+.+-|++||.|.| +.| .+..|.|..|.=-..|.+-+..++-+.+
T Consensus 14 LrK~F~~GDHVkV-i~G~~~getGlVV~v~~d~v~v~SD~t~~Ei~V 59 (69)
T 2do3_A 14 LRKYFKMGDHVKV-IAGRFEGDTGLIVRVEENFVILFSDLTMHELKV 59 (69)
T ss_dssp CCSSCCTTCEEEE-SSSTTTTCEEEEEEECSSCEEEEESSSCSEEEE
T ss_pred ceeeccCCCeEEE-eccEEcCceEEEEEEeCCEEEEEeCCCCCEEEE
Confidence 3478999999999 444 4668888888654424444444444433
No 8
>3cnr_A Type IV fimbriae assembly protein; PILZ, xanthomonas citri, type IV pilus assembly, unknown function; HET: MSE; 1.90A {Xanthomonas axonopodis PV} PDB: 3dsg_A
Probab=33.46 E-value=28 Score=31.47 Aligned_cols=20 Identities=5% Similarity=0.214 Sum_probs=18.0
Q ss_pred hhhhhhccCCccCCcEEEEe
Q 005375 245 SSAMIHATRPFVLNEWIQTK 264 (699)
Q Consensus 245 aGi~I~~~rPfrIGD~I~Ik 264 (699)
+|++|-.++||.+||.|.+.
T Consensus 32 GGlFI~T~~~~~~G~~V~l~ 51 (117)
T 3cnr_A 32 GGIFVPTPKRYMLGDEVFLL 51 (117)
T ss_dssp CEEEEECCSCCCTTCEEEEE
T ss_pred CeEEEeeCCccCCCCEEEEE
Confidence 57999999999999999884
No 9
>3exz_A MAOC-like dehydratase; Q2RSA1_rhort, NESG, RRR103A, structur genomics, PSI-2, protein structure initiative; 2.30A {Rhodospirillum rubrum}
Probab=26.07 E-value=76 Score=28.99 Aligned_cols=16 Identities=6% Similarity=0.030 Sum_probs=14.0
Q ss_pred hhhccCCccCCcEEEE
Q 005375 248 MIHATRPFVLNEWIQT 263 (699)
Q Consensus 248 ~I~~~rPfrIGD~I~I 263 (699)
-+-+.+|..+||.|.+
T Consensus 85 ~~rF~~PV~~GD~L~~ 100 (154)
T 3exz_A 85 ELSWPNPTRPGDELHV 100 (154)
T ss_dssp EEECSSCCCTTCEEEE
T ss_pred EEEEcCCCCCCCEEEE
Confidence 4678899999999987
No 10
>3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B*
Probab=25.54 E-value=4e+02 Score=29.55 Aligned_cols=151 Identities=11% Similarity=0.168 Sum_probs=95.8
Q ss_pred HHHHhhhhhh-ccCCccCCcEEEEeecCCCeeEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEeccCCCceEEEEE
Q 005375 241 TNFLSSAMIH-ATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTH 319 (699)
Q Consensus 241 ~Ni~aGi~I~-~~rPfrIGD~I~Iki~~~~~~G~VeeIgL~sTT~IRt~Dg~~v~IPNs~l~s~~I~N~Sr~~~~ri~i~ 319 (699)
.++=.|.+|. ++.|+-.|=+|.+..++ |....|++.. .++..+.|+.++-. +.....|.|.+---+.+.
T Consensus 86 pDlPkgYQITQ~~~Pia~~G~l~i~~~~----g~~k~I~I~r-ihlEEDagK~~h~~-----~~slvD~NRaGvPLiEIV 155 (478)
T 3h0l_B 86 PDLPKGYQISQYEKPLATNGWVELNLPN----GEKKKVRIRR-LHIEEDAGKNIHEG-----DKTLVDLNRAGTPLMEIV 155 (478)
T ss_dssp TTCTTSEEEEESSSCSEEEEEEEEECTT----SCEEEEEEEE-EEEEECCCEEEEET-----TEEEEECSSTTCEEEEEE
T ss_pred CCCCcccchhccccCeecCCEEEEEecC----CceEEEeeEE-EEecccccccccCC-----CceEEecCCCCCceEEEe
Confidence 3445688885 78899999999984332 4467899998 99999999999872 346778888887666665
Q ss_pred EEeccCCHHHHHHHHHHHHHHHHhCCCcccccc--ceE----EEEEeeCCCCceEEEEEEEEEecCChhhHHHHHHHHHH
Q 005375 320 LAISHLDVHKINSIVADMRKVLAKNPQVEQQRL--HRR----VFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILL 393 (699)
Q Consensus 320 l~I~ytd~ekv~~i~~~I~e~L~s~p~v~~~~~--~p~----V~v~~~~~~~~sl~i~V~~~v~~~d~~~~~~vr~~I~~ 393 (699)
-.=+..+++.+++.++.++..|+...--+..+- .-+ |-+...+... +--++-+++- ..+..++..|..
T Consensus 156 TePd~~s~eeA~a~~~~L~~ilr~lgvsd~~meeGslR~DvNVSvr~~g~~~----~GtRvEiKNl--nS~~~v~~AI~y 229 (478)
T 3h0l_B 156 TEPDIRTPEEARLFLEKLRNIMRYAGVSKADMEKGQLRCDINVSIRPKGSKE----FGTRVEIKNV--NSFRFVQKALEY 229 (478)
T ss_dssp ECTTBCSHHHHHHHHHHHHHHHHHHTSCCCCGGGTSEEEEEEEEEEETTCCS----CCCCEEEECC--CSHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHhCcCccccccCceEeeeeEEeccCCCCC----CcceEEEecc--ccHHHHHHHHHH
Confidence 555567899999999999888876432222110 111 1122211100 1123344443 345667777777
Q ss_pred HHHHHHH--HCCCccC
Q 005375 394 DLLRVIS--HHRARLA 407 (699)
Q Consensus 394 ~Il~~~~--e~GIe~a 407 (699)
++.+..+ +.|-++.
T Consensus 230 Ei~RQ~~~le~Gg~V~ 245 (478)
T 3h0l_B 230 EIERQINVVEEGGEVV 245 (478)
T ss_dssp HHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHcCCCee
Confidence 7777543 3565543
No 11
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=23.74 E-value=2.7e+02 Score=26.82 Aligned_cols=20 Identities=10% Similarity=-0.096 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHHHhh
Q 005375 218 TQKWLTAGGLGTVLLTLAGR 237 (699)
Q Consensus 218 i~~lla~lGi~glalgfA~q 237 (699)
....+..+|++-.++|+++.
T Consensus 73 ~p~~~~~~G~~l~l~G~~l~ 92 (194)
T 4a2n_B 73 LPDSIRLFALIVTFLNIGLF 92 (194)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH
Confidence 34455555665555555543
No 12
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=22.71 E-value=2.9e+02 Score=24.20 Aligned_cols=95 Identities=6% Similarity=0.020 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCccccccceEEEEEeeC---------CCCceEEEEEEEEEecCChhhHHHHHHHHHHHH
Q 005375 325 LDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNIN---------PENQALLILVSCFVKTSHHEEYLCVKEAILLDL 395 (699)
Q Consensus 325 td~ekv~~i~~~I~e~L~s~p~v~~~~~~p~V~v~~~~---------~~~~sl~i~V~~~v~~~d~~~~~~vr~~I~~~I 395 (699)
.+.++.+++.+.+.+.+.+..+...+.. .+.+..+. .++..+.+.|.++-..+ -+-+.++..+|
T Consensus 10 ~s~e~~~~l~~~i~~al~~~lg~p~~~~--~v~i~~~~~~~~~~gg~~~~~~~~i~i~~~~grt-----~eqK~~l~~~l 82 (128)
T 1mww_A 10 KLAPRREKLAEVIYNSLHLGLDIPKGKH--AIRFLCLEKEDFYYPFDRSDDYTVIEINLMAGRM-----EGTKKRLIKML 82 (128)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCTTSS--CEEEEEECGGGEECCTTSCTTCEEEEEEEETTCC-----HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHCcChHHE--EEEEEEeChHHeecCCCCCCCcEEEEEEECCCCC-----HHHHHHHHHHH
Confidence 4678888888888888877665554432 24444332 22234566666554332 35678888999
Q ss_pred HHHHHH-CCCccCCCcEEEEEeeccCccCCCCCccc
Q 005375 396 LRVISH-HRARLATPIRTVQKIFSDADLENVPFADT 430 (699)
Q Consensus 396 l~~~~e-~GIe~a~P~rtv~~~~~~~~~~~~P~~~~ 430 (699)
.+.+.+ .|+ |...+++...+.+.++.-|+..
T Consensus 83 ~~~l~~~lg~----~~~~v~V~i~e~~~~~wg~gG~ 114 (128)
T 1mww_A 83 FSELEYKLGI----RAHDVEITIKEQPAHCWGFRGM 114 (128)
T ss_dssp HHHHHHHHCC----CGGGEEEEEEEECGGGEEETTE
T ss_pred HHHHHHHhCc----ChhhEEEEEEECCHHHeeECCE
Confidence 998876 455 5566777777766665444333
No 13
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=22.58 E-value=63 Score=29.90 Aligned_cols=28 Identities=7% Similarity=0.023 Sum_probs=21.9
Q ss_pred cCCccCCcEEEEeecC--CCeeEEEEEEece
Q 005375 252 TRPFVLNEWIQTKIEG--YEVSGTVEHVGWW 280 (699)
Q Consensus 252 ~rPfrIGD~I~Iki~~--~~~~G~VeeIgL~ 280 (699)
...|.+||+|+|. +| .|..|.|++++..
T Consensus 89 ~~~~~~Gd~VrI~-~Gpf~g~~g~V~~vd~~ 118 (152)
T 3p8b_B 89 VSGLEPGDLVEVI-AGPFKGQKAKVVKIDES 118 (152)
T ss_dssp TTTCCTTCEEEEC-SSTTTTCEEEEEEEETT
T ss_pred cccCCCCCEEEEe-eecCCCCEEEEEEEeCC
Confidence 3479999999993 33 4678999999854
No 14
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=22.50 E-value=77 Score=27.11 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=19.7
Q ss_pred CCccCCcEEEEeecCCCeeEEEEEEec
Q 005375 253 RPFVLNEWIQTKIEGYEVSGTVEHVGW 279 (699)
Q Consensus 253 rPfrIGD~I~Iki~~~~~~G~VeeIgL 279 (699)
+.++|||+|+| ..++..|+|.-||-
T Consensus 4 ~~i~vG~Rv~v--~~~~~~G~VryvG~ 28 (84)
T 4b6m_A 4 ETIHVGDRCLC--RPGDRLGSVRFVGR 28 (84)
T ss_dssp -CCCTTCEEEE--TTTTEEEEEEEEEE
T ss_pred cCcccCCEEEE--cCCCeEEEEEEEec
Confidence 46899999998 34567899999984
No 15
>3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_B 2dqn_B* 2g5h_B 2g5i_B* 2f2a_B
Probab=21.75 E-value=4.5e+02 Score=29.21 Aligned_cols=155 Identities=11% Similarity=0.127 Sum_probs=98.4
Q ss_pred HHHHhhhhhh-ccCCccCCcEEEEeecCCCeeEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEeccCCCceEEEEE
Q 005375 241 TNFLSSAMIH-ATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTH 319 (699)
Q Consensus 241 ~Ni~aGi~I~-~~rPfrIGD~I~Iki~~~~~~G~VeeIgL~sTT~IRt~Dg~~v~IPNs~l~s~~I~N~Sr~~~~ri~i~ 319 (699)
.++=.|.+|. ++.|+-.|=+|.+..+ |.-..|++.. ..+..+.|+.++-.. .....|.|.+---+.+.
T Consensus 84 pDlPkgYQITQ~~~Pia~~G~l~i~~~-----~~~k~I~I~r-ihlEEDagK~~h~~~-----~slvD~NRaGvPLiEIV 152 (483)
T 3ip4_B 84 PDNPKAYQISQFDQPIGENGYIDIEVD-----GETKRIGITR-LHMEEDAGKSTHKGE-----YSLVDLNRQGTPLIEIV 152 (483)
T ss_dssp TTBTTSEEEECSSSCSEEEEEEEECSS-----SSCEEEEEEE-EEEEECCCEEEEETT-----EEEEECTTTTCEEEEEE
T ss_pred CCCCcCccccccccCeecCCEEEEEec-----CceEEEeEEE-EeecchhhhhccCCC-----ceEEecCCCCCceEEEe
Confidence 3455688885 7889999999998432 2237899998 999999999998643 56788999887766665
Q ss_pred EEeccCCHHHHHHHHHHHHHHHHhCCCcccccc--ceE----EEEEeeCCCCceEEEEEEEEEecCChhhHHHHHHHHHH
Q 005375 320 LAISHLDVHKINSIVADMRKVLAKNPQVEQQRL--HRR----VFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILL 393 (699)
Q Consensus 320 l~I~ytd~ekv~~i~~~I~e~L~s~p~v~~~~~--~p~----V~v~~~~~~~~sl~i~V~~~v~~~d~~~~~~vr~~I~~ 393 (699)
-.=+..+++.+++.++.|+..|+...--+..+- .-+ |-+...+... +-.++-+++- ..+..++..|..
T Consensus 153 TePd~~s~eeA~a~~~~L~~ilr~lgvsd~~meeGslR~DvNVSvr~~g~~~----~GtRvEiKNl--nS~~~v~~AI~y 226 (483)
T 3ip4_B 153 SEPDIRSPKEAYAYLEKLRSIIQYTGVSDVKMEEGSLRCDANISLRPYGQEK----FGTKAELKNL--NSFNYVRKGLEY 226 (483)
T ss_dssp ECSCBCSHHHHHHHHHHHHHHHHHHTSCCCCGGGTSEEEEEEEEEEETTSCC----CCCEEEEECC--CSHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcccCceEeeeeEeecCCCCCC----CcceEEEecc--cCHHHHHHHHHH
Confidence 555667899999999999988876431111110 111 1122222111 1223444443 345667777877
Q ss_pred HHHHHHH--HCCCccCCCcEE
Q 005375 394 DLLRVIS--HHRARLATPIRT 412 (699)
Q Consensus 394 ~Il~~~~--e~GIe~a~P~rt 412 (699)
++.+..+ +.|-++.-++|.
T Consensus 227 Ei~RQ~~~le~Gg~v~qETR~ 247 (483)
T 3ip4_B 227 EEKRQEEELLNGGEIGQETRR 247 (483)
T ss_dssp HHHHHHHHHHHTCCCCEEEEE
T ss_pred HHHHHHHHHHcCCcEecccee
Confidence 7777654 456555444443
No 16
>1q6w_A Monoamine oxidase regulatory protein, putative; structural genomics, nysgxrc T805, hot DOG fold; 2.81A {Archaeoglobus fulgidus} SCOP: d.38.1.4
Probab=21.19 E-value=2e+02 Score=25.97 Aligned_cols=20 Identities=15% Similarity=0.278 Sum_probs=16.5
Q ss_pred HhhhhhhccCCccCCcEEEE
Q 005375 244 LSSAMIHATRPFVLNEWIQT 263 (699)
Q Consensus 244 ~aGi~I~~~rPfrIGD~I~I 263 (699)
..++-+-+.+|..+||.|.+
T Consensus 96 ~~~~~~rF~~PV~~Gd~l~~ 115 (161)
T 1q6w_A 96 FGIKDVRFLRPVFIGDTIAA 115 (161)
T ss_dssp EEEEEEEECSCCBTTCEEEE
T ss_pred ceeEEEEEecCCCCCCEEEE
Confidence 45566778899999999987
No 17
>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=20.88 E-value=52 Score=28.76 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=22.2
Q ss_pred hhccCCccCCcEEEEeecCCCeeEEEEEEece
Q 005375 249 IHATRPFVLNEWIQTKIEGYEVSGTVEHVGWW 280 (699)
Q Consensus 249 I~~~rPfrIGD~I~Iki~~~~~~G~VeeIgL~ 280 (699)
++....+++||+|++ .+...|+|.-||-.
T Consensus 11 ~~~~~~~~vG~RV~V---~g~~~GtVryvG~v 39 (95)
T 2cp0_A 11 MLSALGLRLGDRVLL---DGQKTGTLRFCGTT 39 (95)
T ss_dssp HHHHHTCCTTCEEEE---TTTEEEEEEEEECC
T ss_pred cccccCCCCCCEEEE---CCCCeEEEEEeccc
Confidence 444567999999999 24568999998864
No 18
>4hpv_A S-adenosylmethionine synthase; structural genomics, PSI-biology; 2.21A {Sulfolobus solfataricus P2}
Probab=20.13 E-value=5.5e+02 Score=27.91 Aligned_cols=79 Identities=15% Similarity=0.275 Sum_probs=56.1
Q ss_pred EEEEeccCCHHHHHHHHHHHHHHHHh------CCCccccccceEEEEEeeCCCCceEEEEEEEEEecC---ChhhHHHHH
Q 005375 318 THLAISHLDVHKINSIVADMRKVLAK------NPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTS---HHEEYLCVK 388 (699)
Q Consensus 318 i~l~I~ytd~ekv~~i~~~I~e~L~s------~p~v~~~~~~p~V~v~~~~~~~~sl~i~V~~~v~~~---d~~~~~~vr 388 (699)
..++|.|.+....++++-.+.++|.+ +|.+-.| +.+.++.. +..+.+.|-|-.-+. +.++|...+
T Consensus 164 TS~gVGyAPlS~~E~~Vl~~E~~Lns~~~k~~~P~~GeD-----IKVMG~R~-g~~i~LTvA~a~v~r~v~~~~~Y~~~K 237 (407)
T 4hpv_A 164 TSFGVGFAPLTKLEKLVYETERHLNSKQFKAKLPEVGED-----IKVMGLRR-GNEVDLTIAMATISELIEDVNHYINVK 237 (407)
T ss_dssp CCEEEEEESCCHHHHHHHHHHHHHHSHHHHHHCTTEEEE-----EEEEEEEE-TTEEEEEEEEEEEGGGCCSHHHHHHHH
T ss_pred cCceeccCCCCHHHHHHHHHHHHhcchhhhhhCcccCCc-----eEEEEEee-CCeEEEEEEhhhhhhhhCCHHHHHHHH
Confidence 45788887777777777778777754 5666544 44545443 246777776665543 778899999
Q ss_pred HHHHHHHHHHHHHC
Q 005375 389 EAILLDLLRVISHH 402 (699)
Q Consensus 389 ~~I~~~Il~~~~e~ 402 (699)
+++...+.+...+.
T Consensus 238 ~~v~~~v~~~a~~~ 251 (407)
T 4hpv_A 238 EQVRNQILDLASKI 251 (407)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988754
Done!