Query 005376
Match_columns 699
No_of_seqs 464 out of 1708
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 22:28:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005376.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005376hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1924 RhoA GTPase effector D 100.0 4.8E-72 1E-76 613.7 41.9 382 232-654 615-1005(1102)
2 smart00498 FH2 Formin Homology 100.0 2.2E-68 4.7E-73 593.9 37.9 376 236-654 3-386 (432)
3 PF02181 FH2: Formin Homology 100.0 2.2E-64 4.7E-69 552.6 32.4 365 234-639 2-370 (370)
4 KOG1922 Rho GTPase effector BN 100.0 7.2E-53 1.6E-57 505.0 37.2 428 237-696 390-830 (833)
5 KOG1923 Rac1 GTPase effector F 100.0 2.3E-52 5E-57 462.3 30.5 371 229-650 357-738 (830)
6 KOG1925 Rac1 GTPase effector F 100.0 8.5E-45 1.8E-49 383.7 30.9 366 237-653 278-658 (817)
7 KOG3671 Actin regulatory prote 99.3 5.5E-11 1.2E-15 128.5 18.8 31 79-109 228-258 (569)
8 KOG1924 RhoA GTPase effector D 99.1 2.2E-08 4.8E-13 113.1 25.9 42 416-464 758-799 (1102)
9 smart00498 FH2 Formin Homology 98.1 1.4E-05 2.9E-10 90.1 10.3 123 524-646 301-432 (432)
10 PHA03247 large tegument protei 98.0 0.0003 6.5E-09 89.3 19.9 8 257-264 3025-3032(3151)
11 PHA03247 large tegument protei 97.9 0.00042 9.2E-09 88.0 20.2 17 235-251 3016-3032(3151)
12 KOG3671 Actin regulatory prote 97.9 0.00051 1.1E-08 75.5 17.1 10 257-266 495-504 (569)
13 KOG1830 Wiskott Aldrich syndro 97.1 0.02 4.4E-07 62.1 16.5 16 20-35 230-245 (518)
14 KOG1923 Rac1 GTPase effector F 94.6 0.13 2.8E-06 59.9 9.0 31 414-444 555-585 (830)
15 KOG1830 Wiskott Aldrich syndro 94.6 2.2 4.8E-05 46.9 17.5 9 313-321 489-497 (518)
16 cd00132 CRIB PAK (p21 activate 94.1 0.032 7E-07 41.8 2.0 23 86-109 2-24 (42)
17 PHA03378 EBNA-3B; Provisional 92.1 3.8 8.3E-05 47.6 15.1 8 96-103 669-676 (991)
18 PHA03378 EBNA-3B; Provisional 91.7 4.7 0.0001 46.8 15.4 9 98-106 686-694 (991)
19 KOG1922 Rho GTPase effector BN 89.2 65 0.0014 39.7 32.4 28 414-441 625-652 (833)
20 PF00786 PBD: P21-Rho-binding 88.1 0.055 1.2E-06 43.6 -2.5 23 86-108 1-23 (59)
21 KOG0994 Extracellular matrix g 87.6 18 0.00038 44.8 16.3 19 426-444 1471-1489(1758)
22 KOG4672 Uncharacterized conser 87.3 4.8 0.0001 44.2 10.6 11 323-333 470-480 (487)
23 smart00285 PBD P21-Rho-binding 86.9 0.27 5.8E-06 35.6 0.7 17 87-103 1-17 (36)
24 KOG4849 mRNA cleavage factor I 84.7 44 0.00095 36.2 15.9 14 270-283 356-369 (498)
25 PRK15319 AIDA autotransporter- 79.9 3 6.5E-05 53.7 6.1 8 258-265 1762-1769(2039)
26 smart00806 AIP3 Actin interact 76.0 49 0.0011 37.1 13.4 70 531-603 249-321 (426)
27 cd01093 CRIB_PAK_like PAK (p21 74.7 1.3 2.8E-05 33.9 0.6 21 86-106 2-22 (46)
28 KOG0132 RNA polymerase II C-te 73.9 1E+02 0.0023 37.0 15.8 7 21-28 496-502 (894)
29 KOG0307 Vesicle coat complex C 70.0 1.8E+02 0.004 36.3 17.3 14 63-76 696-709 (1049)
30 KOG0307 Vesicle coat complex C 69.2 2.2E+02 0.0049 35.6 17.8 17 19-35 677-693 (1049)
31 PF06160 EzrA: Septation ring 68.9 2E+02 0.0042 33.9 17.2 125 529-653 256-399 (560)
32 PRK04778 septation ring format 68.7 2.1E+02 0.0046 33.6 17.5 67 541-607 273-339 (569)
33 PF07174 FAP: Fibronectin-atta 68.4 29 0.00062 36.5 8.8 6 316-321 164-169 (297)
34 PRK15313 autotransport protein 68.1 13 0.00028 45.3 7.3 7 258-264 677-683 (955)
35 KOG4849 mRNA cleavage factor I 68.0 93 0.002 33.8 12.7 10 98-107 196-205 (498)
36 PRK15313 autotransport protein 66.5 14 0.0003 45.1 7.1 11 67-77 459-470 (955)
37 PRK14950 DNA polymerase III su 65.1 38 0.00082 40.0 10.4 6 247-252 470-475 (585)
38 KOG0260 RNA polymerase II, lar 61.7 4.4E+02 0.0096 33.6 18.1 10 69-78 1448-1457(1605)
39 PF14523 Syntaxin_2: Syntaxin- 60.8 1.1E+02 0.0024 26.8 10.3 25 575-599 27-51 (102)
40 KOG1962 B-cell receptor-associ 59.0 1.8E+02 0.004 29.7 12.5 28 372-400 11-38 (216)
41 PF10455 BAR_2: Bin/amphiphysi 58.6 2E+02 0.0042 31.0 13.3 24 623-646 257-280 (289)
42 PRK07764 DNA polymerase III su 58.2 1.1E+02 0.0023 37.8 12.8 7 246-252 514-520 (824)
43 KOG4025 Putative apoptosis rel 57.9 39 0.00084 32.9 7.1 77 307-383 31-113 (207)
44 KOG1785 Tyrosine kinase negati 56.8 33 0.00072 37.8 7.1 15 22-36 456-470 (563)
45 COG0497 RecN ATPase involved i 56.0 2.2E+02 0.0048 33.3 14.1 55 582-656 322-376 (557)
46 PF06013 WXG100: Proteins of 1 55.8 1.1E+02 0.0025 25.0 10.2 66 581-650 7-72 (86)
47 PF10147 CR6_interact: Growth 54.7 1.8E+02 0.0038 29.9 11.6 54 596-657 150-203 (217)
48 KOG4848 Extracellular matrix-a 54.4 1.6E+02 0.0034 29.5 10.7 63 582-652 143-209 (225)
49 KOG0933 Structural maintenance 54.0 1.8E+02 0.004 36.1 13.2 32 410-443 599-630 (1174)
50 PF10158 LOH1CR12: Tumour supp 51.6 1.1E+02 0.0024 28.8 9.0 73 528-611 34-106 (131)
51 PF08580 KAR9: Yeast cortical 51.1 2.3E+02 0.005 34.2 13.7 26 576-601 267-292 (683)
52 PLN03099 PIR Protein PIR; Prov 51.0 2.4E+02 0.0051 35.9 13.8 173 301-476 105-305 (1232)
53 PF05659 RPW8: Arabidopsis bro 50.9 53 0.0012 31.6 7.0 88 339-431 36-132 (147)
54 PF14712 Snapin_Pallidin: Snap 50.6 54 0.0012 28.4 6.5 75 578-653 7-81 (92)
55 PF05278 PEARLI-4: Arabidopsis 50.2 86 0.0019 33.1 8.8 21 532-553 156-176 (269)
56 PRK11637 AmiB activator; Provi 49.7 1.6E+02 0.0036 33.1 11.9 28 584-611 102-129 (428)
57 smart00503 SynN Syntaxin N-ter 49.3 1.9E+02 0.0042 25.7 12.0 30 578-607 43-72 (117)
58 PF03114 BAR: BAR domain; Int 47.2 2.9E+02 0.0063 27.2 12.4 21 399-419 25-45 (229)
59 KOG0804 Cytoplasmic Zn-finger 46.2 1.2E+02 0.0026 34.2 9.5 94 518-615 354-451 (493)
60 PF10234 Cluap1: Clusterin-ass 46.0 3.5E+02 0.0075 28.7 12.6 16 449-464 106-121 (267)
61 PF03310 Cauli_DNA-bind: Cauli 45.5 83 0.0018 29.2 6.9 45 551-595 7-51 (121)
62 PF04108 APG17: Autophagy prot 44.9 5E+02 0.011 29.2 20.6 11 468-478 112-122 (412)
63 KOG4462 WASP-interacting prote 44.5 4.7E+02 0.01 28.8 16.5 8 81-88 43-50 (437)
64 PF04156 IncA: IncA protein; 44.5 1.6E+02 0.0036 28.9 9.7 28 585-612 123-150 (191)
65 PF15035 Rootletin: Ciliary ro 44.3 1E+02 0.0022 30.8 8.0 46 518-567 73-119 (182)
66 cd00179 SynN Syntaxin N-termin 44.0 2.8E+02 0.006 26.0 12.5 32 577-608 40-71 (151)
67 COG5178 PRP8 U5 snRNP spliceos 43.5 19 0.00041 44.6 3.0 13 340-352 254-266 (2365)
68 PRK11637 AmiB activator; Provi 43.2 2.3E+02 0.0049 32.0 11.7 28 580-607 105-132 (428)
69 cd07651 F-BAR_PombeCdc15_like 42.9 1.3E+02 0.0028 31.0 8.9 121 528-648 92-230 (236)
70 cd07667 BAR_SNX30 The Bin/Amph 42.5 4.2E+02 0.0091 27.7 13.6 51 532-591 96-146 (240)
71 PHA03246 large tegument protei 41.2 1.2E+03 0.026 32.5 20.7 114 528-650 1724-1843(3095)
72 PF07889 DUF1664: Protein of u 39.4 2.6E+02 0.0057 26.2 9.4 34 529-562 47-80 (126)
73 cd07593 BAR_MUG137_fungi The B 39.1 1.6E+02 0.0035 30.1 8.8 23 397-419 4-26 (215)
74 KOG2203 GTP-binding protein [G 38.4 5E+02 0.011 30.6 12.9 46 435-480 243-296 (772)
75 COG4477 EzrA Negative regulato 37.5 2.7E+02 0.0059 32.3 10.7 28 625-652 436-463 (570)
76 PF02252 PA28_beta: Proteasome 37.1 3.9E+02 0.0085 25.8 12.2 37 548-584 18-54 (150)
77 KOG0566 Inositol-1,4,5-triphos 36.8 3.6E+02 0.0079 33.5 12.1 10 68-77 914-923 (1080)
78 PF04108 APG17: Autophagy prot 36.0 6.8E+02 0.015 28.2 18.6 16 524-539 243-258 (412)
79 PF04344 CheZ: Chemotaxis phos 35.8 3.2E+02 0.0069 27.9 10.3 24 585-608 59-82 (214)
80 COG5178 PRP8 U5 snRNP spliceos 35.7 32 0.00069 42.7 3.3 23 414-436 627-649 (2365)
81 KOG0994 Extracellular matrix g 35.7 1.1E+03 0.023 30.4 23.8 40 308-347 1470-1517(1758)
82 KOG0995 Centromere-associated 35.1 8.1E+02 0.017 28.8 19.9 28 391-418 362-389 (581)
83 PRK14720 transcript cleavage f 34.6 2.8E+02 0.006 34.6 11.1 66 403-481 45-111 (906)
84 KOG1451 Oligophrenin-1 and rel 33.8 6.1E+02 0.013 29.9 12.7 39 375-419 8-46 (812)
85 PF07544 Med9: RNA polymerase 33.4 3.1E+02 0.0068 23.5 8.6 34 535-568 13-46 (83)
86 PF09325 Vps5: Vps5 C terminal 33.1 5.2E+02 0.011 26.0 19.0 68 581-652 166-233 (236)
87 PF09738 DUF2051: Double stran 33.1 2.7E+02 0.0057 30.2 9.5 85 514-610 88-172 (302)
88 KOG3091 Nuclear pore complex, 32.5 8E+02 0.017 28.3 13.3 202 338-612 294-496 (508)
89 PRK10869 recombination and rep 32.4 3E+02 0.0066 32.3 10.7 29 627-655 346-374 (553)
90 PRK10132 hypothetical protein; 32.0 1.4E+02 0.003 27.2 6.2 43 578-620 45-87 (108)
91 KOG3647 Predicted coiled-coil 31.1 4.1E+02 0.0088 28.2 9.9 10 469-478 77-86 (338)
92 PF03276 Gag_spuma: Spumavirus 30.7 2E+02 0.0044 33.3 8.4 44 305-348 309-355 (582)
93 KOG4302 Microtubule-associated 30.5 3.9E+02 0.0086 32.0 11.1 63 547-609 58-127 (660)
94 PF03276 Gag_spuma: Spumavirus 30.5 2.4E+02 0.0053 32.7 9.0 6 276-281 294-299 (582)
95 cd07653 F-BAR_CIP4-like The F- 30.4 5.9E+02 0.013 26.1 11.6 20 631-650 128-147 (251)
96 PF01544 CorA: CorA-like Mg2+ 30.4 5.9E+02 0.013 26.3 11.8 8 613-620 252-259 (292)
97 cd07603 BAR_ACAPs The Bin/Amph 30.3 78 0.0017 32.0 4.8 112 542-658 1-116 (200)
98 cd07606 BAR_SFC_plant The Bin/ 29.8 4.9E+02 0.011 26.4 10.3 23 630-652 104-126 (202)
99 cd07627 BAR_Vps5p The Bin/Amph 29.6 5.7E+02 0.012 25.9 11.0 121 527-654 13-133 (216)
100 TIGR00383 corA magnesium Mg(2+ 29.5 5.3E+02 0.011 27.5 11.4 12 470-481 134-145 (318)
101 PHA02562 46 endonuclease subun 29.4 6.5E+02 0.014 29.1 13.0 24 625-648 298-321 (562)
102 PF03915 AIP3: Actin interacti 29.2 1.2E+02 0.0027 34.3 6.5 98 543-648 260-363 (424)
103 PF15449 Retinal: Retinal prot 28.8 1.2E+03 0.026 29.6 14.7 6 29-34 901-906 (1287)
104 PF04420 CHD5: CHD5-like prote 28.6 1.8E+02 0.0039 28.3 6.8 56 549-608 39-96 (161)
105 PF06992 Phage_lambda_P: Repli 28.5 1.5E+02 0.0032 30.8 6.4 42 576-617 96-139 (233)
106 PF10168 Nup88: Nuclear pore c 28.4 1.1E+03 0.025 28.6 14.8 12 98-109 151-162 (717)
107 TIGR00153 conserved hypothetic 28.4 5.8E+02 0.013 25.7 10.9 27 544-570 44-70 (216)
108 PF11593 Med3: Mediator comple 28.2 1.5E+02 0.0032 32.7 6.5 101 322-431 7-115 (379)
109 PF07889 DUF1664: Protein of u 28.1 4.2E+02 0.0092 24.8 8.8 21 547-567 47-67 (126)
110 PRK09752 adhesin; Provisional 27.8 57 0.0012 41.1 3.8 6 259-264 986-991 (1250)
111 cd07647 F-BAR_PSTPIP The F-BAR 27.8 3.3E+02 0.0072 28.0 9.1 70 581-650 156-235 (239)
112 KOG3208 SNARE protein GS28 [In 27.7 3.3E+02 0.0071 28.0 8.4 65 589-653 55-120 (231)
113 PF08336 P4Ha_N: Prolyl 4-Hydr 27.6 2E+02 0.0044 26.8 6.8 67 578-648 15-83 (134)
114 KOG2391 Vacuolar sorting prote 27.4 8.6E+02 0.019 26.7 14.9 26 383-408 300-325 (365)
115 KOG0251 Clathrin assembly prot 26.9 4.1E+02 0.0088 30.8 10.2 70 578-647 219-293 (491)
116 PRK10404 hypothetical protein; 26.7 2.1E+02 0.0046 25.7 6.3 42 578-619 38-80 (101)
117 cd07663 BAR_SNX5 The Bin/Amphi 26.7 3.9E+02 0.0085 27.5 9.1 43 573-615 18-60 (218)
118 PLN00034 mitogen-activated pro 26.4 2.1E+02 0.0046 30.7 7.8 7 256-262 86-92 (353)
119 KOG1029 Endocytic adaptor prot 26.3 7.2E+02 0.016 30.4 11.9 177 371-610 428-610 (1118)
120 KOG2391 Vacuolar sorting prote 25.9 6E+02 0.013 27.9 10.5 9 94-102 101-109 (365)
121 PF08359 TetR_C_4: YsiA-like p 25.9 93 0.002 28.5 4.1 14 581-594 3-16 (133)
122 COG2317 Zn-dependent carboxype 25.7 3.7E+02 0.008 30.8 9.3 24 623-646 168-191 (497)
123 PRK04654 sec-independent trans 25.4 3E+02 0.0066 28.1 7.7 16 552-567 36-51 (214)
124 KOG1925 Rac1 GTPase effector F 25.3 6.4E+02 0.014 29.1 10.9 25 577-601 630-654 (817)
125 KOG4500 Rho/Rac GTPase guanine 25.1 1.3E+02 0.0029 34.0 5.6 53 420-477 324-383 (604)
126 cd07628 BAR_Atg24p The Bin/Amp 25.0 6.8E+02 0.015 24.8 12.7 14 578-591 87-100 (185)
127 PF04803 Cor1: Cor1/Xlr/Xmr co 24.9 4.7E+02 0.01 24.7 8.5 73 577-651 42-114 (130)
128 cd07307 BAR The Bin/Amphiphysi 24.6 5.9E+02 0.013 23.9 13.1 30 627-656 92-121 (194)
129 PF07464 ApoLp-III: Apolipopho 24.3 6.7E+02 0.014 24.4 10.1 27 622-648 124-151 (155)
130 KOG4460 Nuclear pore complex, 24.1 6.7E+02 0.014 29.3 10.8 60 579-646 613-672 (741)
131 cd07596 BAR_SNX The Bin/Amphip 24.0 6.9E+02 0.015 24.5 21.1 69 580-652 147-215 (218)
132 KOG3156 Uncharacterized membra 23.8 3.8E+02 0.0082 27.4 8.0 41 528-571 104-144 (220)
133 PRK04863 mukB cell division pr 23.5 6.5E+02 0.014 33.4 12.2 34 402-435 232-265 (1486)
134 PF04156 IncA: IncA protein; 23.4 5.9E+02 0.013 24.9 9.7 27 579-605 124-150 (191)
135 KOG2662 Magnesium transporters 23.3 6.6E+02 0.014 28.3 10.5 30 579-608 225-257 (414)
136 cd07598 BAR_FAM92 The Bin/Amph 23.1 8.1E+02 0.018 25.0 12.1 58 586-647 136-193 (211)
137 KOG0964 Structural maintenance 23.0 1.2E+03 0.025 29.5 13.0 33 386-418 664-696 (1200)
138 PF03978 Borrelia_REV: Borreli 22.9 6.3E+02 0.014 24.6 8.9 48 578-625 81-138 (160)
139 cd07604 BAR_ASAPs The Bin/Amph 22.7 1.1E+02 0.0024 31.3 4.3 116 545-660 4-135 (215)
140 KOG0162 Myosin class I heavy c 22.7 1.1E+03 0.024 28.8 12.4 129 74-209 918-1049(1106)
141 KOG3821 Heparin sulfate cell s 22.5 8.2E+02 0.018 28.6 11.3 42 578-619 106-156 (563)
142 cd07649 F-BAR_GAS7 The F-BAR ( 22.0 5.1E+02 0.011 26.8 9.1 20 629-648 204-223 (233)
143 PF09903 DUF2130: Uncharacteri 22.0 2.5E+02 0.0055 29.7 6.9 74 578-653 156-229 (267)
144 PF11593 Med3: Mediator comple 21.7 2.7E+02 0.0058 30.8 7.0 38 577-615 65-102 (379)
145 KOG2236 Uncharacterized conser 21.5 5.3E+02 0.012 29.4 9.4 7 101-107 377-383 (483)
146 KOG1118 Lysophosphatidic acid 21.4 9.5E+02 0.021 26.1 10.7 21 398-418 24-44 (366)
147 PF06013 WXG100: Proteins of 1 21.1 4.5E+02 0.0097 21.2 9.6 28 576-603 46-73 (86)
148 KOG0810 SNARE protein Syntaxin 21.1 1.1E+03 0.023 25.5 12.3 32 574-605 71-102 (297)
149 PF08580 KAR9: Yeast cortical 21.0 7.5E+02 0.016 30.0 11.3 27 543-569 29-55 (683)
150 PRK11085 magnesium/nickel/coba 21.0 8.1E+02 0.017 26.6 10.7 12 470-481 131-142 (316)
151 PF00901 Orbi_VP5: Orbivirus o 21.0 1.1E+03 0.024 27.3 11.7 20 552-571 114-133 (508)
152 KOG4403 Cell surface glycoprot 20.8 1.2E+03 0.027 26.4 11.8 22 639-660 357-378 (575)
153 KOG0521 Putative GTPase activa 20.5 1.5E+03 0.032 28.0 13.7 43 371-422 8-50 (785)
154 PF10458 Val_tRNA-synt_C: Valy 20.5 3.4E+02 0.0073 22.1 6.0 57 551-608 5-62 (66)
155 cd07637 BAR_ACAP3 The Bin/Amph 20.2 9E+02 0.02 24.4 12.1 118 529-649 41-164 (200)
156 cd07639 BAR_ACAP1 The Bin/Amph 20.2 8.1E+02 0.017 24.8 9.8 22 631-652 103-124 (200)
157 cd07621 BAR_SNX5_6 The Bin/Amp 20.1 6.1E+02 0.013 26.1 9.0 40 573-612 19-58 (219)
158 PF08807 DUF1798: Bacterial do 20.0 3.7E+02 0.008 24.6 6.6 29 574-602 23-51 (111)
No 1
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=4.8e-72 Score=613.67 Aligned_cols=382 Identities=28% Similarity=0.413 Sum_probs=338.5
Q ss_pred CCCCCCCCCCCCCcccccccccCC-CCcccccccccCccccc--HHHHHHHhcccccccccc----ccCCCCCCCCccee
Q 005376 232 AEGDANAPKTKLKPFFWDKVLANP-DNSMVWHQIKSGSFQFN--EEMIETLFGYSEKSKNEK----KKGSSLDTGPQYIQ 304 (699)
Q Consensus 232 ~~~~~~~Pk~klK~l~W~ki~~~~-~~~TiW~~i~~~~~~~d--~~~lE~lF~~~~~~k~~~----kk~~~~~~~~~~v~ 304 (699)
..++...|...||+++|.+|.+.. .++.+|-.++++.+.-| +..|..-|+.+...+.+. -|.+..+++.+...
T Consensus 615 kpKK~~k~e~~Mrr~nW~kI~p~d~s~~cFWvkv~Edk~en~dlfakL~~~Fatq~k~~k~~e~~eekkt~~kKk~kel~ 694 (1102)
T KOG1924|consen 615 KPKKVYKPEVPMRRFNWSKIVPRDLSENCFWVKVNEDKLENDDLFAKLALKFATQPKVKKEQEGGEEKKTGTKKKVKELR 694 (1102)
T ss_pred CccccCCCCCccccCCccccCccccCccceeeecchhhccchHHHHHHHHHhhccccccccccccccccchhhhhhhhhe
Confidence 345667788999999999997654 57899999998877633 245667798874433321 11122456788899
Q ss_pred ecChHHHhhHHHHHHhcCCCHHHHHHHhhcCC--CCcHHHHHHHHhcCCCHHHHHHHHhhccccccCChHHHHHHHHcCC
Q 005376 305 IIDQKKAQNLSIMLRALNVTLEEVCDALLEGN--ELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDI 382 (699)
Q Consensus 305 iLd~kraqni~I~L~~l~~s~~ei~~al~~~~--~L~~e~l~~Ll~~~Pt~eE~~~l~~~~~d~~~L~~aE~Fl~~l~~I 382 (699)
|||.|.|||++|+|..|+++++||+.+|++.| .|+...|++|++.+|..|-+.+|+++....+.|.+.|||...|..|
T Consensus 695 ilDsKtaQnLsIflgS~rmpyeeik~~ILevne~vLse~~iqnLik~lPe~E~l~~L~e~Kaeye~l~e~EQF~vvm~~v 774 (1102)
T KOG1924|consen 695 ILDSKTAQNLSIFLGSFRMPYEEIKNVILEVNEDVLSESMIQNLIKHLPEQEQLNKLSELKAEYEDLPEPEQFVVVMSQV 774 (1102)
T ss_pred ecchHHHHHHHHHHhhccCCHHHHHHHHhhccHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCCHHHHhHHHhhc
Confidence 99999999999999999999999999999987 4999999999999999999999999988889999999999999999
Q ss_pred cChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcccccCCCCCcceeeeecccccccccc
Q 005376 383 PFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDV 462 (699)
Q Consensus 383 p~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~~~~lL~~vL~~GN~lN~gt~rg~A~GFkL~sL~KL~d~ 462 (699)
.++.-||.+++|+.+|.+.+++|++.|..+..||++||+|+.|.+||++||.+|||||+|+...+|+||.|++|.||.||
T Consensus 775 krL~pRL~~ilFKl~fse~vnniKP~i~avt~ACEE~rkSesFs~lLeLvLl~GNyMn~gSrNa~afgF~is~L~kL~dT 854 (1102)
T KOG1924|consen 775 KRLRPRLSAILFKLTFSEQVNNIKPDIVAVTAACEELRKSESFSKLLELVLLVGNYMNSGSRNAQAFGFNISFLCKLRDT 854 (1102)
T ss_pred cccChhHHHHHHHhhHHHHHhhcChHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccccccchhhccchHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred ccCCCCccHHHHHHHHHHhhhhhhHHhhhhcccccccccchhhHhhhcCCccchHHHHhhhhhhhcchhhhHHHHHHHhh
Q 005376 463 KGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAA 542 (699)
Q Consensus 463 Ks~d~k~tLLh~lv~~i~~~~~~~~~~~~~e~~s~~~~~~~~ll~~~~~~~~~~e~~~~lgl~~v~~l~~eL~~V~kAa~ 542 (699)
|++|+|+||||||++.+. +.|++ +..|.+||++|.+|++
T Consensus 855 KsaDqk~TLLHfLae~~e------------------------------------~kypd-----~l~F~ddl~hv~kaSr 893 (1102)
T KOG1924|consen 855 KSADQKTTLLHFLAEICE------------------------------------EKYPD-----ILKFPDDLEHVEKASR 893 (1102)
T ss_pred cccchhhHHHHHHHHHHH------------------------------------HhChh-----hhcchhhHHHHHhhcc
Confidence 999999999999997442 33433 4578899999999999
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcc
Q 005376 543 IDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKD 622 (699)
Q Consensus 543 vd~d~L~~~v~~L~~~l~~~~~~l~~~~~~~~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YFged~~k~ 622 (699)
|++|.|.+.+..++..+.+.+..+....-.-.++|.|.++|..|.+.|.+++..|..+..+|+.+|+++.+||.-|++|.
T Consensus 894 vnad~ikK~~~~m~~~ik~Le~dlk~~~~~~~e~dkF~ekM~~F~e~a~eq~~~ls~M~~~M~~lye~L~eYyaFd~kky 973 (1102)
T KOG1924|consen 894 VNADEIKKNLQQMENQIKKLERDLKNFKIAGNEHDKFVEKMTSFHEKAREQYSKLSSMHGNMEKLYESLGEYYAFDPKKY 973 (1102)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHeecCcccC
Confidence 99999999999999999998887754333334678999999999999999999999999999999999999999999999
Q ss_pred chhhhcHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 005376 623 EGLRLFTIVRDFFIMLDKACKQVKDAPKKSTK 654 (699)
Q Consensus 623 e~~~fF~iv~dFl~~l~ka~kEv~~~~kr~~k 654 (699)
..++||+.+++|-..|..|.+|+.+.|+.++|
T Consensus 974 smEEFFaDi~tFrnaf~ea~~en~krRee~Ek 1005 (1102)
T KOG1924|consen 974 SMEEFFADIRTFRNAFLEAVAENEKRREEEEK 1005 (1102)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888776654
No 2
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=100.00 E-value=2.2e-68 Score=593.85 Aligned_cols=376 Identities=35% Similarity=0.523 Sum_probs=335.3
Q ss_pred CCCCCCCCCcccccccccCCCCcccccccccCcccccHHHHHHHhcccccccccccc-----CCCCCCCCcceeecChHH
Q 005376 236 ANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNEEMIETLFGYSEKSKNEKKK-----GSSLDTGPQYIQIIDQKK 310 (699)
Q Consensus 236 ~~~Pk~klK~l~W~ki~~~~~~~TiW~~i~~~~~~~d~~~lE~lF~~~~~~k~~~kk-----~~~~~~~~~~v~iLd~kr 310 (699)
...|+.+||+|||+||..+.+++|||+++++.+ ++|+++||++|+++...+...+. .....++.+.|+|||+||
T Consensus 3 ~~~P~~klK~l~W~ki~~~~~~~tvW~~i~~~~-~~d~~~lE~lF~~k~~~~~~~~~~~~~~~~~~~~~~~~v~ild~kr 81 (432)
T smart00498 3 EPKPKKKLKPLHWDKLNPLDPRGTVWDKIDENS-EGDLDELEELFAAKEKTKSASKDVSEKKSILKKKVSQEFKILDPKR 81 (432)
T ss_pred CCCCCCCCcCcCceeCCCccccCChhhhcCccc-ccCHHHHHHHhCcCccccCccccccccccccccccccceEeechhH
Confidence 457999999999999998889999999999876 79999999999986543322111 111234567899999999
Q ss_pred HhhHHHHHHhcCCCHHHHHHHhhcCC--CCcHHHHHHHHhcCCCHHHHHHHHhhccc-cccCChHHHHHHHHcCCcChHH
Q 005376 311 AQNLSIMLRALNVTLEEVCDALLEGN--ELPAELIQTLLKMAPTAEEELKLRLFNGE-LSQLGPAERFLKALVDIPFSFK 387 (699)
Q Consensus 311 aqni~I~L~~l~~s~~ei~~al~~~~--~L~~e~l~~Ll~~~Pt~eE~~~l~~~~~d-~~~L~~aE~Fl~~l~~Ip~~~~ 387 (699)
+|||+|+|++|++++++|++||+++| .|+.|.|+.|++++||.||+..|+.|.|+ .+.|+++|||++.|++||++.+
T Consensus 82 s~ni~I~L~~l~~~~~ei~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~L~~~Eqfl~~l~~ip~~~~ 161 (432)
T smart00498 82 SQNLAILLRKLHMSYEEICEAILEGDEDVLSVDLLEQLLKYAPTKEELKKLREYKEEDPEELARAEQFLLLISNIPYLEE 161 (432)
T ss_pred HhhHHHHHHhcCCCHHHHHHHHHhcChhhCCHHHHHHHHhhCcCHHHHHHHHHhcccchhhcchHHHHHHHHhCCCCHHH
Confidence 99999999999999999999999988 59999999999999999999999999887 8999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcccccCCCCCcceeeeeccccccccccccCCC
Q 005376 388 RLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDG 467 (699)
Q Consensus 388 Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~~~~lL~~vL~~GN~lN~gt~rg~A~GFkL~sL~KL~d~Ks~d~ 467 (699)
||+||+|+.+|++++.+|+..|.+|..||++|++|+.|+.||++||++|||||+|+.||+|+||+|++|.||.|||++|+
T Consensus 162 Rl~~~~f~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~mN~g~~rg~A~GFkL~sL~KL~d~Ks~d~ 241 (432)
T smart00498 162 RLNALLFKANFEEEVEDLKPQLEKVEAACEELRESKKFRKLLELILAIGNYMNSGSRRGQAYGFKLSSLLKLSDVKSADN 241 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCcccCCCcCCCcceeeHHHHHHHHhhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHhhhhhhHHhhhhcccccccccchhhHhhhcCCccchHHHHhhhhhhhcchhhhHHHHHHHhhhcHHH
Q 005376 468 KTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDADS 547 (699)
Q Consensus 468 k~tLLh~lv~~i~~~~~~~~~~~~~e~~s~~~~~~~~ll~~~~~~~~~~e~~~~lgl~~v~~l~~eL~~V~kAa~vd~d~ 547 (699)
++|||||||+.|+++++ + +..|.+||..|..|++++ +.
T Consensus 242 k~tLLhylv~~i~~~~p-------------------~----------------------~~~f~~el~~v~~askvs-~~ 279 (432)
T smart00498 242 KTTLLHFLVKIIRKKYP-------------------D----------------------LLDFYSDLHHLDKAKVNL-EQ 279 (432)
T ss_pred CccHHHHHHHHHHHhCh-------------------h----------------------hccchhhhccHHHHHHHH-HH
Confidence 99999999998765432 1 235778999999999999 99
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccchhhh
Q 005376 548 LTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRL 627 (699)
Q Consensus 548 L~~~v~~L~~~l~~~~~~l~~~~~~~~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YFged~~k~e~~~f 627 (699)
|..++..|.+++..++..+..-......++.|..+|..|+..|+.++..|...++++...|++++.|||++..+..+.+|
T Consensus 280 l~~~~~~l~~~~~~~e~~~~~l~~~~~~~d~f~~~m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~ef 359 (432)
T smart00498 280 LEKDVKQLERQIKNLETDLGGLSDPENLDDKFIEVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKDTSPEEF 359 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 99999999999988875443211222335899999999999999999999999999999999999999999998788999
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 005376 628 FTIVRDFFIMLDKACKQVKDAPKKSTK 654 (699)
Q Consensus 628 F~iv~dFl~~l~ka~kEv~~~~kr~~k 654 (699)
|.+|.+|+..|.+|++|+.+.++.+++
T Consensus 360 F~~f~~F~~~f~ka~~en~~~~~~e~~ 386 (432)
T smart00498 360 FKDFNEFLKEFSKAAEENIKKEEEEEE 386 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998766544443
No 3
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=100.00 E-value=2.2e-64 Score=552.63 Aligned_cols=365 Identities=37% Similarity=0.559 Sum_probs=308.9
Q ss_pred CCCCCCCCCCCcccccccccCCCCcccccccccCc--ccccHHHHHHHhccccccccccccCCCCCCCCcceeecChHHH
Q 005376 234 GDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGS--FQFNEEMIETLFGYSEKSKNEKKKGSSLDTGPQYIQIIDQKKA 311 (699)
Q Consensus 234 ~~~~~Pk~klK~l~W~ki~~~~~~~TiW~~i~~~~--~~~d~~~lE~lF~~~~~~k~~~kk~~~~~~~~~~v~iLd~kra 311 (699)
+...+|+.+||++||++|......+|||++++... ..+|+++||++|+.+..............++.+.++|||.||+
T Consensus 2 k~~~~p~~k~k~l~W~~i~~~~~~~tiW~~~~~~~~~~~~d~~~le~~F~~~~~~~~~~~~~~~~~~~~~~~~iLd~kr~ 81 (370)
T PF02181_consen 2 KKKPKPKKKLKPLHWDKIPNSKIKGTIWSKIDEDEFNIDIDFEELEELFAKKEKEKKSKKKQASKKKKKKKISILDPKRS 81 (370)
T ss_dssp ------SS-B------EESSGGCTTSCCCCTCCHHHHCTSHHHHHHHHTBSCECHHHH----HCCCCTTCCESSS-HHHH
T ss_pred CCCCCCCCCCcCCCceecCcccccCCccccCcccccchhhhHHHHHHHhccccccccccccccccccccccccccchHHH
Confidence 34567999999999999998889999999998765 4688999999999875543322212234457788999999999
Q ss_pred hhHHHHHHhcCCCHHHHHHHhhcCCC--CcHHHHHHHHhcCCCHHHHHHHHhhccccccCChHHHHHHHHcCCcChHHHH
Q 005376 312 QNLSIMLRALNVTLEEVCDALLEGNE--LPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRL 389 (699)
Q Consensus 312 qni~I~L~~l~~s~~ei~~al~~~~~--L~~e~l~~Ll~~~Pt~eE~~~l~~~~~d~~~L~~aE~Fl~~l~~Ip~~~~Rl 389 (699)
|||+|+|++|++++++|++||..+|. |+.|.|+.|++++||.||+..+++|.++...|+++|+|++.|+.||++..||
T Consensus 82 ~ni~I~L~~~~~~~~~l~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~L~~~E~f~~~l~~ip~~~~rl 161 (370)
T PF02181_consen 82 QNIGIVLKKFKLSPEELIQAILNLDEEVLTEELLENLLKILPTPEEIEALKAYKGDPATLGPAEQFLLELSKIPRLKERL 161 (370)
T ss_dssp HHHHHHHHHHTS-HHHHHHHHHTTTTCCCTHHHHHHHHHHCGGHHHHHHHHCTCTSGTTB-HHHHHHHHHTTSTTHHHHH
T ss_pred HHHHHHhhccCCCHHHHHHHHHccCccccchHHHHHHHhcCCCchHHHHHHHHhccHHhhccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998874 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcccccCCCCCcceeeeeccccccccccccCCCCc
Q 005376 390 EALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKT 469 (699)
Q Consensus 390 ~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~~~~lL~~vL~~GN~lN~gt~rg~A~GFkL~sL~KL~d~Ks~d~k~ 469 (699)
+||+|+.+|.++++++.+.|+++..||++|++|..|++||++||++|||||+|+.||+|.||+|++|.||.+||++|+++
T Consensus 162 ~~~~~~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~lN~g~~~g~A~GF~L~sL~kL~~~Ks~d~~~ 241 (370)
T PF02181_consen 162 EALLFKSEFEEQLEELKEKLEKLEAACEELRESKSLRRLLEIILAIGNFLNGGTPRGNAKGFKLSSLSKLKDTKSNDNKT 241 (370)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSTCSTTCS-SEE-GGGGGGCCCSB-STTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhccCCCccccceecHHhHHHHHhcccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhhhhhHHhhhhcccccccccchhhHhhhcCCccchHHHHhhhhhhhcchhhhHHHHHHHhhhcHHHHH
Q 005376 470 TLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDADSLT 549 (699)
Q Consensus 470 tLLh~lv~~i~~~~~~~~~~~~~e~~s~~~~~~~~ll~~~~~~~~~~e~~~~lgl~~v~~l~~eL~~V~kAa~vd~d~L~ 549 (699)
|||||||+.+.++. ++ +..|.+||..|..|+++|++.|.
T Consensus 242 tLL~~l~~~~~~~~-------------------~~----------------------~~~~~~eL~~v~~a~~~~~~~l~ 280 (370)
T PF02181_consen 242 TLLHYLVKIVEEKF-------------------PD----------------------LLDLEDELSSVEKASKVSLDELE 280 (370)
T ss_dssp BHHHHHHHHHHTTS-------------------GG----------------------GGGHHHHTTTHHHCCTS-HHHHH
T ss_pred hHHHHHHHHHHhcC-------------------hH----------------------HhccHHHHhhHHhhhhhhHHHHH
Confidence 99999998764321 11 23567899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccchhhhcH
Q 005376 550 GTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFT 629 (699)
Q Consensus 550 ~~v~~L~~~l~~~~~~l~~~~~~~~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YFged~~k~e~~~fF~ 629 (699)
.++.+|.+++.+++..++......+.++.|...|..|++.++.++..|.+.+.++.+.+++++.|||++..+.++.+||.
T Consensus 281 ~~i~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~~ff~ 360 (370)
T PF02181_consen 281 QDIKELEKGLEKIKKELEAIEKDEEDDDKFKEKMKEFLEEAETKLDELQELYEELEEAFKQLLQYFGEDPKKMSPEEFFK 360 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 99999999999999988764444566789999999999999999999999999999999999999999999889999999
Q ss_pred HHHHHHHHHH
Q 005376 630 IVRDFFIMLD 639 (699)
Q Consensus 630 iv~dFl~~l~ 639 (699)
+|.+|+.+|+
T Consensus 361 ~l~~F~~~fk 370 (370)
T PF02181_consen 361 ILSQFIDMFK 370 (370)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 9999999885
No 4
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=7.2e-53 Score=504.96 Aligned_cols=428 Identities=39% Similarity=0.577 Sum_probs=369.5
Q ss_pred CCCCCCCCcccccccccCCCCcccccccccCcccccH---HHHHHHhcccccccccc----ccCCCCCCCCcceeecChH
Q 005376 237 NAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQFNE---EMIETLFGYSEKSKNEK----KKGSSLDTGPQYIQIIDQK 309 (699)
Q Consensus 237 ~~Pk~klK~l~W~ki~~~~~~~TiW~~i~~~~~~~d~---~~lE~lF~~~~~~k~~~----kk~~~~~~~~~~v~iLd~k 309 (699)
..|+.+||++||+++..+....++|+.+....+.+|. +++|.+|++........ ..+.......+.+.++|.+
T Consensus 390 ~~p~~~lk~l~wdk~~~~~~~~~~w~~~~~~~~~~~~~~~~~~e~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~r 469 (833)
T KOG1922|consen 390 AQPKNKLKPLHWDKTRGSSKRSMVWSEVDSSSSLFDPPLSELMEALFGLVKFLPSDNGGDTGREEKTAVEKKRLKVLDPR 469 (833)
T ss_pred CCCCCCCCCccccccCCCCccCCCCCccccCCcCCCCCcccccccchhhhhcccCCCCCCCccccccccccccccccCCC
Confidence 6789999999999999999999999999999888888 99999998764332211 1111111223678999999
Q ss_pred HHhhHHHHHHhcCCCHHHHHHHhhcCCC--CcHHHHHHHHhcCCCHHHHHHHHhhccccccCChHHHHHHH-HcCCcChH
Q 005376 310 KAQNLSIMLRALNVTLEEVCDALLEGNE--LPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKA-LVDIPFSF 386 (699)
Q Consensus 310 raqni~I~L~~l~~s~~ei~~al~~~~~--L~~e~l~~Ll~~~Pt~eE~~~l~~~~~d~~~L~~aE~Fl~~-l~~Ip~~~ 386 (699)
++||++|+|+.|++..++++.+|+.++. +..++|++|.++.|+.+|..+++.|.++...|+..|+|+.+ +..|+++.
T Consensus 470 ~~~n~~ill~sl~~~~~~~~~a~~~~~~~~~~~~~l~~l~~~~pt~~E~~~l~~~~~~~~~l~~~e~~~~~~~~~ip~~~ 549 (833)
T KOG1922|consen 470 RPQNIAILLSSLNMPTEDIPQALLELDDSVLGLDQLEKLLKFAPTKEEETKLKEESGDPLTLGDAEKFFFEELSGIPEFE 549 (833)
T ss_pred CccceeeehhhcCCchHHHHHHHhccCccccCHHHHHHHHccCCChhHHHHHHhhcCCCCccchHHHHHHHHhhcchHHH
Confidence 9999999999999999999999999876 99999999999999999999999999988899999999887 56799999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcccccCCCCCcceeeeeccccccccccccCC
Q 005376 387 KRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVD 466 (699)
Q Consensus 387 ~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~~~~lL~~vL~~GN~lN~gt~rg~A~GFkL~sL~KL~d~Ks~d 466 (699)
.|+++++|+..|.+++..+...+.++..||+++++++.|.+++++||..|||||.|+.||+|+||+|++|.||.|+|+.+
T Consensus 550 ~~~~~~~f~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~~~~~~e~il~~Gn~mN~g~~rg~a~~f~l~~l~kl~d~ks~~ 629 (833)
T KOG1922|consen 550 ERLQALSFRSKFSEEVTALKKKLETVEVASKELLESKKFLKILEIILAAGNRMNAGTNRGSAHGFKLDALLKLSDVKSSD 629 (833)
T ss_pred HHHHHhhhhhhccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcccccccccccccchhhHHHHhhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHhhhhhhHHhhhhcccccccccchhhHhhhcCCccchHHHHhhhhhhhcchhhhHHHHHHHhhhcHH
Q 005376 467 GKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDAD 546 (699)
Q Consensus 467 ~k~tLLh~lv~~i~~~~~~~~~~~~~e~~s~~~~~~~~ll~~~~~~~~~~e~~~~lgl~~v~~l~~eL~~V~kAa~vd~d 546 (699)
+++++||+++.++++.+|.+.. ..++.|+.+|++.|.+|..||.+|++|++||++
T Consensus 630 ~~~~~l~~~~~e~~~~~~~r~~-------------------------~~~~~~~~~~~~~~~~~~~~l~~v~~aa~i~~~ 684 (833)
T KOG1922|consen 630 GKTTLLHFVVPEVVRSEGKRSV-------------------------IDVEKSRRLGLPSLLKFLSDLSNVESAAKIDLE 684 (833)
T ss_pred ccchhhhhhHHHHHHhhccccc-------------------------hhhhhhhhccchhhhcccchhcccchhhccCHH
Confidence 9999999999999998775432 145688999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-hhccc-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC-ccc
Q 005376 547 SLTGTVSKLGHALLKTRDFLN-TDMKN-LGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAG-KDE 623 (699)
Q Consensus 547 ~L~~~v~~L~~~l~~~~~~l~-~~~~~-~~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YFged~~-k~e 623 (699)
.+..++.+|.+++.++++.++ ..... ...++.|..+|..|+..|+.++..+..++++++..++.+++|||++++ +..
T Consensus 685 ~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~~fl~~ae~ev~~l~~~~~~~~~~~~~~~~yf~~~~~~~~~ 764 (833)
T KOG1922|consen 685 VLAEECSDLKKGLEKVKRELPTASKNESLPPGDPFSKVKKEFLSSAEKEVKLLISEEREVRESVKKTAKYFGEDPKEEIT 764 (833)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCC
Confidence 999999999999999999986 33322 345789999999999999999999999999999999999999999995 556
Q ss_pred hhhhcHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCCCCCCCCCCCCCCchhhhccchhhhhccCCCCCCC
Q 005376 624 GLRLFTIVRDFFIMLDKACKQVKDAPKKSTKSLKKEGSTASSSSDTPQQPSPDLRHRLFPAITERRVEDFSSD 696 (699)
Q Consensus 624 ~~~fF~iv~dFl~~l~ka~kEv~~~~kr~~k~~kke~~~~~s~~~~~~~~~~~~~~~~~p~~~~r~~~~~~~~ 696 (699)
.+++|.++++|+.+++++|+|++.+++++... + .........-..+.+..++.+..+|..++.++.
T Consensus 765 ~~~~f~~~r~fl~~~~~~~~e~~~~~~k~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 830 (833)
T KOG1922|consen 765 PEQVFSILRDFLRTFDKAHEENKKAEEKEKTY---E----AEEKRANKEAELEELKNISQAVSKRTSDSESSL 830 (833)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---c----ccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999887432 1 001111112234445566666666666555544
No 5
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=2.3e-52 Score=462.30 Aligned_cols=371 Identities=23% Similarity=0.311 Sum_probs=323.8
Q ss_pred CCCCCCCCCCCCCCCCcccccccccCCCCcccccccccCcc--cccHHHHHHHhccccccccc----cccCCCCCCCCcc
Q 005376 229 GAGAEGDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSF--QFNEEMIETLFGYSEKSKNE----KKKGSSLDTGPQY 302 (699)
Q Consensus 229 ~~g~~~~~~~Pk~klK~l~W~ki~~~~~~~TiW~~i~~~~~--~~d~~~lE~lF~~~~~~k~~----~kk~~~~~~~~~~ 302 (699)
.+.+-+.....|.++-.++|..+..+.+++|+|+.+++..+ ++|++++|+.|.....+... ..+.....+..+.
T Consensus 357 ~a~~ik~~~~tk~~~p~lnW~alKP~qv~~tvf~~~~De~Il~~lD~~~~ee~Fk~~~s~~~~~~e~~a~~~~~~ka~qk 436 (830)
T KOG1923|consen 357 FAATIKKPTPTKTKSPSLNWLALKPIQVKGTVFHELNDEKILEALDFSRFEEQFKILKSNGQILDESSAVSKAMTKAPQK 436 (830)
T ss_pred HHHhhcCCCcccccCCCccccccCccccccchhhhhhHHHHHHhhhHHHHHHHHHhhhcccchhhhHHHHHHHhhhhhhh
Confidence 33445555667888889999999999999999999887765 47999999999873222211 1111122345678
Q ss_pred eeecChHHHhhHHHHHHhcCCCHHHHHHHhhcCC--CCcHHHHHHHHhcCCCHHHHHHHHhhcc---ccccCChHHHHHH
Q 005376 303 IQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGN--ELPAELIQTLLKMAPTAEEELKLRLFNG---ELSQLGPAERFLK 377 (699)
Q Consensus 303 v~iLd~kraqni~I~L~~l~~s~~ei~~al~~~~--~L~~e~l~~Ll~~~Pt~eE~~~l~~~~~---d~~~L~~aE~Fl~ 377 (699)
++++|.+|++|++|.++ +++..++||.||...| .|..+.++.|.+++||++|.+.+++|.. ....|++.++|+.
T Consensus 437 ~tLle~~R~~nlaiT~R-~~~~~~~V~~Aih~~dLk~L~~~~ve~L~r~lPTe~E~kl~~~~~~e~~pme~Ls~edkFml 515 (830)
T KOG1923|consen 437 RTLLEQRRLFNLAITRR-VQMKAKEVMAAIHPLDLKALSLEPVELLQRILPTEAEVKLLREYERERSPMENLSEEDKFML 515 (830)
T ss_pred hhHHHHHHHHHHHHHhh-hcCchHHHHHHhhhccccccCCcHHHHHHhcCCchHHHHHHHHhhhhcCchhhcccchhhhh
Confidence 99999999999999999 9999999999998776 6999999999999999999999998864 4578999999999
Q ss_pred HHcCCcChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcccccCCCCCcceeeeeccccc
Q 005376 378 ALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLL 457 (699)
Q Consensus 378 ~l~~Ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~~~~lL~~vL~~GN~lN~gt~rg~A~GFkL~sL~ 457 (699)
.+..|.++++|+..|-|+.+|.+.+.-+.+++..+..|++.+++|++|+.+|++||++|||||.+. ||.++||+|.+|.
T Consensus 516 ~lskIErle~klatM~~m~nF~dsv~ll~pq~~si~aAS~s~k~sr~lr~VleiILA~gNymns~k-Rg~ayGFklqslD 594 (830)
T KOG1923|consen 516 SLSKIERLEEKLATMEFMGNFPDSVQLLAPQLISIIAASKSLKESRKLRPVLEIILAFGNYMNSSK-RGAAYGFKLQSLD 594 (830)
T ss_pred hhhhhhhhHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHhhccCCCcc-cccccceeccccH
Confidence 999999999999999999999999999999999999999999999999999999999999999986 8999999999999
Q ss_pred cccccccCCCCccHHHHHHHHHHhhhhhhHHhhhhcccccccccchhhHhhhcCCccchHHHHhhhhhhhcchhhhHHHH
Q 005376 458 KLSDVKGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENV 537 (699)
Q Consensus 458 KL~d~Ks~d~k~tLLh~lv~~i~~~~~~~~~~~~~e~~s~~~~~~~~ll~~~~~~~~~~e~~~~lgl~~v~~l~~eL~~V 537 (699)
-|.++|++|.+.|||||++..+.. .|.. +..|.+||..|
T Consensus 595 ~ll~tkStDr~~tLlh~iv~~i~e------------------------------------klp~-----l~~F~~el~~~ 633 (830)
T KOG1923|consen 595 SLLDTKSTDRSMTLLHYIVLTIAE------------------------------------KLPA-----LQLFFSELDFV 633 (830)
T ss_pred HHhhccCCccceeeeehhhHHHHH------------------------------------hhHH-----HHhhHHHhhcc
Confidence 999999999999999999976532 2222 34688999999
Q ss_pred HHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 005376 538 KKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHG 617 (699)
Q Consensus 538 ~kAa~vd~d~L~~~v~~L~~~l~~~~~~l~~~~~~~~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YFge 617 (699)
.||+.++++++..+|.+|.+++..++++.+... . ...|+.|+.+++..+.+|+++.+.+...|+.++.|||+
T Consensus 634 eKa~av~lesV~~Dv~eL~~g~~l~~kE~e~~~------~--~~iL~~F~~n~~~kmkkl~~~~k~A~~af~~~~~y~Ge 705 (830)
T KOG1923|consen 634 EKATAVQLESVLADVKELNAGMTLAEKETEREG------L--DVILSEFLDNNKPKMKKLRKDFKDAAEAFEDVVEYFGE 705 (830)
T ss_pred chhhhhhhhccchhHHHHHhHHHHHHHHHhhhc------c--chHHHHHHhcccHHHHHHHHHHHHHHHHHHhHhHhhCC
Confidence 999999999999999999999999887765421 1 16999999999999999999999999999999999999
Q ss_pred CCCccchhhhcHHHHHHHHHHHHHHHHHHhhhh
Q 005376 618 NAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPK 650 (699)
Q Consensus 618 d~~k~e~~~fF~iv~dFl~~l~ka~kEv~~~~k 650 (699)
+.+...+.-||..|..|+.+|.++..|++...+
T Consensus 706 spk~tppt~ff~~f~~F~~~~k~~~~ene~k~~ 738 (830)
T KOG1923|consen 706 SPKTTPPTVFFQLFVRFVRAYKMARQENEQKKK 738 (830)
T ss_pred CCCCCCCCccHHHHHHHHHHHHhhhhhhhhhhh
Confidence 998888999999999999999999988865544
No 6
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=8.5e-45 Score=383.75 Aligned_cols=366 Identities=23% Similarity=0.315 Sum_probs=308.5
Q ss_pred CCCCCCCCcccccccccC--------CCCcccccccccCcccccHHHHHHHhccccccccccccCCCCCCCCcceeecCh
Q 005376 237 NAPKTKLKPFFWDKVLAN--------PDNSMVWHQIKSGSFQFNEEMIETLFGYSEKSKNEKKKGSSLDTGPQYIQIIDQ 308 (699)
Q Consensus 237 ~~Pk~klK~l~W~ki~~~--------~~~~TiW~~i~~~~~~~d~~~lE~lF~~~~~~k~~~kk~~~~~~~~~~v~iLd~ 308 (699)
...+.++-.|||..+.-. ...+|+|+.++.. .+|...|+.||..+.......||. .+.+.+..+|||.
T Consensus 278 ~~~~r~~~KL~Wr~~~~~~~~Gv~~~r~~~t~W~s~D~~--~~D~~r~~~LFEsr~~~~~P~KK~--~E~r~~~~tVL~~ 353 (817)
T KOG1925|consen 278 LPTKRKTVKLFWRDVKLAGGHGVSASRPCATLWASLDPV--SVDTARLEHLFESRAKEVLPSKKA--GEGRRTMTTVLDP 353 (817)
T ss_pred ccccCceeEEEeecceecCCCCCccccccchhhhccCcc--eecHHHHHHHHHHhhhhhccchhh--cccceeeeeecCc
Confidence 345677889999887532 2468999999764 389999999998764332222332 2345678999999
Q ss_pred HHHhhHHHHHHhcCCCHHHHHHHhhcCCC--CcHHHHHHHHhcCCCHHHHHHHHhh--ccccccCChHHHHHHHHcCCcC
Q 005376 309 KKAQNLSIMLRALNVTLEEVCDALLEGNE--LPAELIQTLLKMAPTAEEELKLRLF--NGELSQLGPAERFLKALVDIPF 384 (699)
Q Consensus 309 kraqni~I~L~~l~~s~~ei~~al~~~~~--L~~e~l~~Ll~~~Pt~eE~~~l~~~--~~d~~~L~~aE~Fl~~l~~Ip~ 384 (699)
||+|.|+|.|.+|. +..-|..||++.|+ ++.|.|+.|++|.||++|+++|... .+..-.||.+|||++.|+.|+.
T Consensus 354 KRt~AINIGLT~LP-Pv~VI~AA~~~FD~~~~~KDGIEK~L~MmPt~eE~qkIe~aqlaNPEipLG~AEQfLLtLSsI~~ 432 (817)
T KOG1925|consen 354 KRTNAINIGLTTLP-PVHVIKAALLNFDEFAVSKDGIEKLLTMMPTEEERQKIEGAQLANPEIPLGPAEQFLLTLSSIGG 432 (817)
T ss_pred ccccceeeccccCC-chhhhHHHHhcchhhhcchhhHHHHHHhCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHhhhHH
Confidence 99999999999986 45667789998875 7899999999999999999998654 3334689999999999999999
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcccccCCCCCcceeeeecccccccccccc
Q 005376 385 SFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKG 464 (699)
Q Consensus 385 ~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~~~~lL~~vL~~GN~lN~gt~rg~A~GFkL~sL~KL~d~Ks 464 (699)
+..||+.|.|+..|+..-.+|.+.|-.+..+++++.+++.|+-+|..+|+||||||+.. ++||.|+.|.|..++|+
T Consensus 433 L~aRL~LWaFklDY~~~EKeiAEPL~Dlk~gm~qlE~n~Tf~~il~tLLAIGNfLnGT~----~KgFeLsYLeKvsEVKD 508 (817)
T KOG1925|consen 433 LAARLQLWAFKLDYDSMEKEIAEPLFDLKVGMEQLEQNATFRCILATLLAIGNFLNGTQ----SKGFELSYLEKVSEVKD 508 (817)
T ss_pred HHHHHHHHhhhcccchhhHHhhhHHHHHHHHHHHHHhcchHHHHHHHHHHHhccccCcc----ccceehHhhhhchhhcc
Confidence 99999999999999999999999999999999999999999999999999999999875 79999999999999999
Q ss_pred CCCCccHHHHHHHHHHhhhhhhHHhhhhcccccccccchhhHhhhcCCccchHHHHhhhhhhhcchhhhHHHHHHHhhhc
Q 005376 465 VDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAID 544 (699)
Q Consensus 465 ~d~k~tLLh~lv~~i~~~~~~~~~~~~~e~~s~~~~~~~~ll~~~~~~~~~~e~~~~lgl~~v~~l~~eL~~V~kAa~vd 544 (699)
+..|.||||+||..++++ |+ ++ +.|.+|+..|.+.|+||
T Consensus 509 tV~KqsLlhHlc~~vVE~--------------Fp---------------es------------sDLYSEiGA~tRSAkVD 547 (817)
T KOG1925|consen 509 TVRKQSLLHHLCSLVVET--------------FP---------------ES------------SDLYSEIGALTRSAKVD 547 (817)
T ss_pred hHHHHHHHHHHHHHHHHh--------------CC---------------cc------------hhHHHHhHhhhhhhhcc
Confidence 999999999999887643 22 11 34668899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC---c
Q 005376 545 ADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAG---K 621 (699)
Q Consensus 545 ~d~L~~~v~~L~~~l~~~~~~l~~~~~~~~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YFged~~---k 621 (699)
++.|...+..|+++++..++.|.. +...+-.-.....|..|++++.++|..|+..+.++.+.|.+.+.|||.... .
T Consensus 548 f~qL~DNL~qlErrCKaSWe~L~~-Iakhe~~p~l~~r~~~fl~~cA~RI~~LKivhrr~~NRfHSFLLy~Gy~p~aIre 626 (817)
T KOG1925|consen 548 FEQLTDNLGQLERRCKASWESLRS-IAKHELAPALRARLTHFLDQCARRIAMLKIVHRRVCNRFHSFLLYLGYTPQAIRE 626 (817)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHH-HHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhh
Confidence 999999999999999999988753 332222345788999999999999999999999999999999999987553 2
Q ss_pred cchhhhcHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005376 622 DEGLRLFTIVRDFFIMLDKACKQVKDAPKKST 653 (699)
Q Consensus 622 ~e~~~fF~iv~dFl~~l~ka~kEv~~~~kr~~ 653 (699)
.....||.+|++|.-.|...+..|-+.++|.+
T Consensus 627 v~iN~fc~~~~EFaLEYRTTRervLQQ~qk~A 658 (817)
T KOG1925|consen 627 VRINQFCHTLREFALEYRTTRERVLQQQQKQA 658 (817)
T ss_pred cCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34689999999999999999888877766554
No 7
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=99.33 E-value=5.5e-11 Score=128.45 Aligned_cols=31 Identities=23% Similarity=0.099 Sum_probs=29.7
Q ss_pred CCcccccccCCCCCCCcCCCCCCCCCCCCCC
Q 005376 79 NSKEEKLDIGKFDGTASFGAVGGTAKSFNEN 109 (699)
Q Consensus 79 ~~k~~k~g~~~~~~~~~~~~~~~~~~~~~~~ 109 (699)
|+|++|.+|+++++|+|++||||+.+.||+.
T Consensus 228 ksk~tk~disaPtnf~h~~hVgwd~~~gf~~ 258 (569)
T KOG3671|consen 228 KSKITKADISAPTNFPHIPHVGWDEQVGFDS 258 (569)
T ss_pred ccccccccCCCCCCCccccccCCCcCCCccc
Confidence 5699999999999999999999999999997
No 8
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=99.11 E-value=2.2e-08 Score=113.09 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=22.0
Q ss_pred HHHHhhcHHHHHHHHHHHHhcccccCCCCCcceeeeecccccccccccc
Q 005376 416 CKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKG 464 (699)
Q Consensus 416 ~~~l~~S~~~~~lL~~vL~~GN~lN~gt~rg~A~GFkL~sL~KL~d~Ks 464 (699)
.+.|.+.+.|..+|.-|-.+-= |=.+.=|||..=..+.++|-
T Consensus 758 ye~l~e~EQF~vvm~~vkrL~p-------RL~~ilFKl~fse~vnniKP 799 (1102)
T KOG1924|consen 758 YEDLPEPEQFVVVMSQVKRLRP-------RLSAILFKLTFSEQVNNIKP 799 (1102)
T ss_pred ccCCCCHHHHhHHHhhccccCh-------hHHHHHHHhhHHHHHhhcCh
Confidence 3445555555555444432222 33455577766666666654
No 9
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=98.08 E-value=1.4e-05 Score=90.05 Aligned_cols=123 Identities=29% Similarity=0.350 Sum_probs=95.8
Q ss_pred hhhhcchhhhHHHH----HHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhccccCCC---cchhhHHHHHHHHHHHHHHH
Q 005376 524 LQAVSHLSSELENV----KKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGEN---SGFHETLKSFVQNAEGDIMW 596 (699)
Q Consensus 524 l~~v~~l~~eL~~V----~kAa~vd~d~L~~~v~~L~~~l~~~~~~l~~~~~~~~~~---~~F~~~m~~Fl~~Ae~~i~~ 596 (699)
++.+.+..+++.++ ..++..+++.|...+.++...+.++...+..+.+....+ ..|.+-|..|...+++.+..
T Consensus 301 l~~~~~~~d~f~~~m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~efF~~f~~F~~~f~ka~~en~~~ 380 (432)
T smart00498 301 LSDPENLDDKFIEVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKDTSPEEFFKDFNEFLKEFSKAAEENIKK 380 (432)
T ss_pred cCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455555 888999999999999999999999998887665542212 24556666666777778888
Q ss_pred HHHHHHHHHHHHHhhcccccCCCCc--cchhhhcHHHHHHHHHHHHHHHHHH
Q 005376 597 LLEEEKRIMSLVKSTGDYFHGNAGK--DEGLRLFTIVRDFFIMLDKACKQVK 646 (699)
Q Consensus 597 L~e~~~~~~~~~k~l~~YFged~~k--~e~~~fF~iv~dFl~~l~ka~kEv~ 646 (699)
+.++.++.+.+++++++||++...+ ..+.++|.+++||+.++|++|++++
T Consensus 381 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~d~~~~~~~ 432 (432)
T smart00498 381 EEEEEERRKQLVKETTEYEQSSSRQKERNPSMDFEVERDFLGVLDSLLEELG 432 (432)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhccchhhhhhhhhhhhhHHHHHHhhC
Confidence 8888899999999999999986643 4578999999999999999999873
No 10
>PHA03247 large tegument protein UL36; Provisional
Probab=97.98 E-value=0.0003 Score=89.31 Aligned_cols=8 Identities=13% Similarity=0.472 Sum_probs=3.8
Q ss_pred Cccccccc
Q 005376 257 NSMVWHQI 264 (699)
Q Consensus 257 ~~TiW~~i 264 (699)
..|.|-..
T Consensus 3025 ~q~~~~~~ 3032 (3151)
T PHA03247 3025 KQTLWPPD 3032 (3151)
T ss_pred ccCCCCCC
Confidence 45555443
No 11
>PHA03247 large tegument protein UL36; Provisional
Probab=97.94 E-value=0.00042 Score=88.03 Aligned_cols=17 Identities=24% Similarity=0.583 Sum_probs=9.0
Q ss_pred CCCCCCCCCCccccccc
Q 005376 235 DANAPKTKLKPFFWDKV 251 (699)
Q Consensus 235 ~~~~Pk~klK~l~W~ki 251 (699)
+...+..-+|.--|-..
T Consensus 3016 ~~~~~~~sl~q~~~~~~ 3032 (3151)
T PHA03247 3016 ETDPPPVSLKQTLWPPD 3032 (3151)
T ss_pred cCCCCCCCcccCCCCCC
Confidence 33445566666555444
No 12
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=97.87 E-value=0.00051 Score=75.53 Aligned_cols=10 Identities=20% Similarity=0.325 Sum_probs=4.5
Q ss_pred Cccccccccc
Q 005376 257 NSMVWHQIKS 266 (699)
Q Consensus 257 ~~TiW~~i~~ 266 (699)
++-+-++|..
T Consensus 495 R~~LmaqIRq 504 (569)
T KOG3671|consen 495 RDALMAQIRQ 504 (569)
T ss_pred HHHHHHHHHh
Confidence 3344445543
No 13
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=97.09 E-value=0.02 Score=62.08 Aligned_cols=16 Identities=13% Similarity=-0.232 Sum_probs=9.0
Q ss_pred ccccccchhhHhhhhh
Q 005376 20 QGRTSTSYCLVALLKY 35 (699)
Q Consensus 20 ~~~~~~~~~~~~~~~~ 35 (699)
-+-+.-.||.-+..-+
T Consensus 230 v~~~~p~~~~~~~dgs 245 (518)
T KOG1830|consen 230 VFSTRPEYQSEQADGS 245 (518)
T ss_pred cccCCccccccccccc
Confidence 3444556776666654
No 14
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=94.59 E-value=0.13 Score=59.93 Aligned_cols=31 Identities=26% Similarity=0.191 Sum_probs=22.1
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcccccCCCC
Q 005376 414 VACKELRNSRLFLKLLEAVLKTGNRMNDGTF 444 (699)
Q Consensus 414 ~A~~~l~~S~~~~~lL~~vL~~GN~lN~gt~ 444 (699)
...++.+.-+...+++-.+..++|.=-.|..
T Consensus 555 ~s~k~sr~lr~VleiILA~gNymns~kRg~a 585 (830)
T KOG1923|consen 555 KSLKESRKLRPVLEIILAFGNYMNSSKRGAA 585 (830)
T ss_pred hhHHHHHHHHHHHHHHHHhhccCCCcccccc
Confidence 3445566667777778888889988777653
No 15
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=94.56 E-value=2.2 Score=46.86 Aligned_cols=9 Identities=22% Similarity=0.360 Sum_probs=4.7
Q ss_pred hHHHHHHhc
Q 005376 313 NLSIMLRAL 321 (699)
Q Consensus 313 ni~I~L~~l 321 (699)
+..|+.++.
T Consensus 489 vatiLsRRi 497 (518)
T KOG1830|consen 489 VATILSRRI 497 (518)
T ss_pred HHHHHHHHH
Confidence 445555554
No 16
>cd00132 CRIB PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway. CRIB-containing effector proteins are functionally diverse and include serine/threonine kinases, tyrosine kinases, actin-binding proteins, and adapter molecules.
Probab=94.13 E-value=0.032 Score=41.77 Aligned_cols=23 Identities=13% Similarity=0.016 Sum_probs=20.6
Q ss_pred ccCCCCCCCcCCCCCCCCCCCCCC
Q 005376 86 DIGKFDGTASFGAVGGTAKSFNEN 109 (699)
Q Consensus 86 g~~~~~~~~~~~~~~~~~~~~~~~ 109 (699)
+|+.|.+|+|+.|+||+.. |++.
T Consensus 2 ~IS~Ptnf~H~~HvG~d~~-g~~~ 24 (42)
T cd00132 2 EISTPTDFKHISHVGWDGV-GFDG 24 (42)
T ss_pred cccCCCCcCcccccCCCCC-Cccc
Confidence 6889999999999999998 7764
No 17
>PHA03378 EBNA-3B; Provisional
Probab=92.07 E-value=3.8 Score=47.56 Aligned_cols=8 Identities=13% Similarity=0.194 Sum_probs=3.4
Q ss_pred CCCCCCCC
Q 005376 96 FGAVGGTA 103 (699)
Q Consensus 96 ~~~~~~~~ 103 (699)
.||+...+
T Consensus 669 ~~hi~~~p 676 (991)
T PHA03378 669 IGHIPYQP 676 (991)
T ss_pred cCCcCCCC
Confidence 34444443
No 18
>PHA03378 EBNA-3B; Provisional
Probab=91.74 E-value=4.7 Score=46.82 Aligned_cols=9 Identities=0% Similarity=0.050 Sum_probs=4.6
Q ss_pred CCCCCCCCC
Q 005376 98 AVGGTAKSF 106 (699)
Q Consensus 98 ~~~~~~~~~ 106 (699)
-.+|.+...
T Consensus 686 ~~~~ap~~~ 694 (991)
T PHA03378 686 PIQWAPGTM 694 (991)
T ss_pred ccccCcccc
Confidence 456665433
No 19
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=89.17 E-value=65 Score=39.70 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=19.1
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcccccC
Q 005376 414 VACKELRNSRLFLKLLEAVLKTGNRMND 441 (699)
Q Consensus 414 ~A~~~l~~S~~~~~lL~~vL~~GN~lN~ 441 (699)
.+....+....+..+.+++...|++++.
T Consensus 625 ~ks~~~~~~~l~~~~~e~~~~~~~r~~~ 652 (833)
T KOG1922|consen 625 VKSSDGKTTLLHFVVPEVVRSEGKRSVI 652 (833)
T ss_pred hhcccccchhhhhhHHHHHHhhccccch
Confidence 3333344466677788888888988876
No 20
>PF00786 PBD: P21-Rho-binding domain; InterPro: IPR000095 The molecular bases of the versatile functions of Rho-like GTPases are still unknown. Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB). The Cdc42/Rac interactive binding (CRIB) region has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway []. In fission yeast pak1+ encodes a protein kinase that interacts with Cdc42p and is involved in the control of cell polarity and mating [].; GO: 0005515 protein binding; PDB: 2OV2_O 1EES_B 2ODB_B 1E0A_B 2QME_I 1F3M_B 3PCS_H 1T84_A 2K42_A 1EJ5_A ....
Probab=88.15 E-value=0.055 Score=43.64 Aligned_cols=23 Identities=17% Similarity=0.052 Sum_probs=18.0
Q ss_pred ccCCCCCCCcCCCCCCCCCCCCC
Q 005376 86 DIGKFDGTASFGAVGGTAKSFNE 108 (699)
Q Consensus 86 g~~~~~~~~~~~~~~~~~~~~~~ 108 (699)
+|+.|.+|+|+.||||+.++++.
T Consensus 1 ~Is~P~nf~H~~HVg~d~~~g~~ 23 (59)
T PF00786_consen 1 DISNPTNFKHVAHVGWDPNTGGF 23 (59)
T ss_dssp TB---EEEEEEEEEEEETTTTEE
T ss_pred CCCCCCCCcceeeeccCCCcccc
Confidence 57889999999999999988864
No 21
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=87.61 E-value=18 Score=44.84 Aligned_cols=19 Identities=5% Similarity=0.034 Sum_probs=13.7
Q ss_pred HHHHHHHHHhcccccCCCC
Q 005376 426 LKLLEAVLKTGNRMNDGTF 444 (699)
Q Consensus 426 ~~lL~~vL~~GN~lN~gt~ 444 (699)
+++=++|-.++|||+..+.
T Consensus 1471 ~el~~Li~~v~~Flt~~~a 1489 (1758)
T KOG0994|consen 1471 RELRNLIQQVRDFLTQPDA 1489 (1758)
T ss_pred HHHHHHHHHHHHHhcCCCC
Confidence 3444567788999998763
No 22
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=87.27 E-value=4.8 Score=44.20 Aligned_cols=11 Identities=27% Similarity=0.552 Sum_probs=5.8
Q ss_pred CCHHHHHHHhh
Q 005376 323 VTLEEVCDALL 333 (699)
Q Consensus 323 ~s~~ei~~al~ 333 (699)
++.++...+++
T Consensus 470 vtkDDaY~~FM 480 (487)
T KOG4672|consen 470 VTKDDAYNAFM 480 (487)
T ss_pred CcchHHHHHHH
Confidence 35555555554
No 23
>smart00285 PBD P21-Rho-binding domain. Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB).
Probab=86.95 E-value=0.27 Score=35.59 Aligned_cols=17 Identities=18% Similarity=0.081 Sum_probs=15.6
Q ss_pred cCCCCCCCcCCCCCCCC
Q 005376 87 IGKFDGTASFGAVGGTA 103 (699)
Q Consensus 87 ~~~~~~~~~~~~~~~~~ 103 (699)
|+.|.+|+|+.|||||.
T Consensus 1 IS~P~nf~H~~HVg~d~ 17 (36)
T smart00285 1 ISTPTDFKHIAHVGFDG 17 (36)
T ss_pred CCCCCCCcEEEEeeECC
Confidence 56799999999999998
No 24
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=84.73 E-value=44 Score=36.22 Aligned_cols=14 Identities=14% Similarity=0.271 Sum_probs=8.4
Q ss_pred cccHHHHHHHhccc
Q 005376 270 QFNEEMIETLFGYS 283 (699)
Q Consensus 270 ~~d~~~lE~lF~~~ 283 (699)
-+-+.+||++...+
T Consensus 356 plSeAEFEdiM~RN 369 (498)
T KOG4849|consen 356 PLSEAEFEDIMTRN 369 (498)
T ss_pred cchHHHHHHHHhhc
Confidence 35556777776543
No 25
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=79.86 E-value=3 Score=53.68 Aligned_cols=8 Identities=38% Similarity=0.896 Sum_probs=4.5
Q ss_pred cccccccc
Q 005376 258 SMVWHQIK 265 (699)
Q Consensus 258 ~TiW~~i~ 265 (699)
+.+|..+.
T Consensus 1762 ~s~W~Ri~ 1769 (2039)
T PRK15319 1762 GSVWARFK 1769 (2039)
T ss_pred CCeEEEEe
Confidence 35666554
No 26
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=76.02 E-value=49 Score=37.12 Aligned_cols=70 Identities=14% Similarity=0.147 Sum_probs=40.3
Q ss_pred hhhHHHHHHH---hhhcHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 005376 531 SSELENVKKA---AAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKR 603 (699)
Q Consensus 531 ~~eL~~V~kA---a~vd~d~L~~~v~~L~~~l~~~~~~l~~~~~~~~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~~~ 603 (699)
..+|..|.+- +.-++..+...+..-.--|+++|+. ++..+=++..|..-.+.++.+.+.++.++.+.+..
T Consensus 249 ~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~---EL~~VcEEqqfL~lQedL~~DL~dDL~ka~eTf~l 321 (426)
T smart00806 249 KKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEA---ELDKVCEEQQFLTLQEDLIADLKEDLEKAEETFDL 321 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444432 2234444555555555555565532 23222235678888889998888888887765543
No 27
>cd01093 CRIB_PAK_like PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway. This subgroup of CRIB/PBD-domains is found N-terminal of Serine/Threonine kinase domains in PAK and PAK-like proteins.
Probab=74.66 E-value=1.3 Score=33.89 Aligned_cols=21 Identities=14% Similarity=-0.051 Sum_probs=18.5
Q ss_pred ccCCCCCCCcCCCCCCCCCCC
Q 005376 86 DIGKFDGTASFGAVGGTAKSF 106 (699)
Q Consensus 86 g~~~~~~~~~~~~~~~~~~~~ 106 (699)
.|++|.+|+|+.|||||+..|
T Consensus 2 ~IS~P~n~~H~~Hv~~d~~~g 22 (46)
T cd01093 2 EISSPTNFKHRVHVGFDPQTG 22 (46)
T ss_pred ccCCCCCceeeeEeeECCCCC
Confidence 478899999999999999665
No 28
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=73.94 E-value=1e+02 Score=36.97 Aligned_cols=7 Identities=43% Similarity=0.629 Sum_probs=3.1
Q ss_pred cccccchh
Q 005376 21 GRTSTSYC 28 (699)
Q Consensus 21 ~~~~~~~~ 28 (699)
|+-+ -||
T Consensus 496 G~ks-e~k 502 (894)
T KOG0132|consen 496 GPKS-EYK 502 (894)
T ss_pred Ccch-hhh
Confidence 4444 444
No 29
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.97 E-value=1.8e+02 Score=36.27 Aligned_cols=14 Identities=21% Similarity=0.235 Sum_probs=6.1
Q ss_pred CccccccccccccC
Q 005376 63 APHKILSLSDYSVG 76 (699)
Q Consensus 63 ~~~~s~s~~~~s~~ 76 (699)
+...+..+..|..+
T Consensus 696 ~~~~~P~~~~~~~~ 709 (1049)
T KOG0307|consen 696 AGHQSPPLTQLRQA 709 (1049)
T ss_pred ccccCCCccccccc
Confidence 34444444444443
No 30
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.23 E-value=2.2e+02 Score=35.56 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=7.2
Q ss_pred hccccccchhhHhhhhh
Q 005376 19 LQGRTSTSYCLVALLKY 35 (699)
Q Consensus 19 ~~~~~~~~~~~~~~~~~ 35 (699)
+||-+.+-.--...|++
T Consensus 677 sQG~~~~A~~~l~~~~s 693 (1049)
T KOG0307|consen 677 SQGALAAAMSFLPLLPS 693 (1049)
T ss_pred hcChHHHHHhhcCcCcc
Confidence 34444444333444444
No 31
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=68.95 E-value=2e+02 Score=33.90 Aligned_cols=125 Identities=10% Similarity=0.164 Sum_probs=68.8
Q ss_pred chhhhHHHHHHH-hhhcHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005376 529 HLSSELENVKKA-AAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSL 607 (699)
Q Consensus 529 ~l~~eL~~V~kA-a~vd~d~L~~~v~~L~~~l~~~~~~l~~~~~~~~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~ 607 (699)
.+...|...... ...+++.+...+..+...+...-+.+++++.....-.+-...+..|+.+++.....|..+..++...
T Consensus 256 ~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~s 335 (560)
T PF06160_consen 256 QIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQS 335 (560)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444333333 3567777777777777777776666665543322222335677788888887777777766665555
Q ss_pred HH-----------------hhcccccCCCCc-cchhhhcHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005376 608 VK-----------------STGDYFHGNAGK-DEGLRLFTIVRDFFIMLDKACKQVKDAPKKST 653 (699)
Q Consensus 608 ~k-----------------~l~~YFged~~k-~e~~~fF~iv~dFl~~l~ka~kEv~~~~kr~~ 653 (699)
|. .+..-|...... .+....|..+.+.+..+.+.+.++.+.++...
T Consensus 336 Y~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~ 399 (560)
T PF06160_consen 336 YTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEIN 399 (560)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 41 010101000000 11244566677777777777777666655443
No 32
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=68.66 E-value=2.1e+02 Score=33.62 Aligned_cols=67 Identities=19% Similarity=0.200 Sum_probs=41.9
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005376 541 AAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSL 607 (699)
Q Consensus 541 a~vd~d~L~~~v~~L~~~l~~~~~~l~~~~~~~~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~ 607 (699)
...+++.+...+.++...|...-+.++++......-.+=..++..|+.+++.....|..+..++...
T Consensus 273 ~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 273 EELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4567777777777777777776666655443221112234567788888877777766666555544
No 33
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=68.37 E-value=29 Score=36.46 Aligned_cols=6 Identities=33% Similarity=0.617 Sum_probs=2.3
Q ss_pred HHHHhc
Q 005376 316 IMLRAL 321 (699)
Q Consensus 316 I~L~~l 321 (699)
|+|.+|
T Consensus 164 v~lgrl 169 (297)
T PF07174_consen 164 VVLGRL 169 (297)
T ss_pred EEeccc
Confidence 334433
No 34
>PRK15313 autotransport protein MisL; Provisional
Probab=68.06 E-value=13 Score=45.35 Aligned_cols=7 Identities=14% Similarity=0.643 Sum_probs=3.4
Q ss_pred ccccccc
Q 005376 258 SMVWHQI 264 (699)
Q Consensus 258 ~TiW~~i 264 (699)
..+|..+
T Consensus 677 ~s~WlR~ 683 (955)
T PRK15313 677 TSLWMRN 683 (955)
T ss_pred CceEEEe
Confidence 3455544
No 35
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=67.95 E-value=93 Score=33.84 Aligned_cols=10 Identities=10% Similarity=0.238 Sum_probs=4.0
Q ss_pred CCCCCCCCCC
Q 005376 98 AVGGTAKSFN 107 (699)
Q Consensus 98 ~~~~~~~~~~ 107 (699)
.+|+....|.
T Consensus 196 R~~~~~~~G~ 205 (498)
T KOG4849|consen 196 RIGAGGQTGR 205 (498)
T ss_pred eecCCCCCCC
Confidence 3444433333
No 36
>PRK15313 autotransport protein MisL; Provisional
Probab=66.46 E-value=14 Score=45.14 Aligned_cols=11 Identities=27% Similarity=0.534 Sum_probs=4.8
Q ss_pred ccccc-ccccCC
Q 005376 67 ILSLS-DYSVGS 77 (699)
Q Consensus 67 s~s~~-~~s~~~ 77 (699)
-|..+ +|....
T Consensus 459 tLTV~GnY~Gn~ 470 (955)
T PRK15313 459 TLTINEDYVGNG 470 (955)
T ss_pred eEEEcceeecCC
Confidence 34443 555443
No 37
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=65.12 E-value=38 Score=39.99 Aligned_cols=6 Identities=33% Similarity=1.348 Sum_probs=3.5
Q ss_pred cccccc
Q 005376 247 FWDKVL 252 (699)
Q Consensus 247 ~W~ki~ 252 (699)
.|..|.
T Consensus 470 ~w~~~~ 475 (585)
T PRK14950 470 IWKQIL 475 (585)
T ss_pred HHHHHH
Confidence 376664
No 38
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=61.68 E-value=4.4e+02 Score=33.63 Aligned_cols=10 Identities=40% Similarity=0.278 Sum_probs=4.4
Q ss_pred cccccccCCC
Q 005376 69 SLSDYSVGSG 78 (699)
Q Consensus 69 s~~~~s~~~~ 78 (699)
|...||-.+.
T Consensus 1448 ssp~~s~tsp 1457 (1605)
T KOG0260|consen 1448 SSPGYSPTSP 1457 (1605)
T ss_pred CCCCCCCCCC
Confidence 4444444433
No 39
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=60.76 E-value=1.1e+02 Score=26.80 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=12.3
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHH
Q 005376 575 ENSGFHETLKSFVQNAEGDIMWLLE 599 (699)
Q Consensus 575 ~~~~F~~~m~~Fl~~Ae~~i~~L~e 599 (699)
+...+.+.|..-+..+..-+..+.+
T Consensus 27 Ds~~lR~~i~~~~~~~~~l~k~~~~ 51 (102)
T PF14523_consen 27 DSQELREKIHQLIQKTNQLIKEISE 51 (102)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666555555544444333
No 40
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=58.97 E-value=1.8e+02 Score=29.75 Aligned_cols=28 Identities=25% Similarity=0.231 Sum_probs=16.7
Q ss_pred HHHHHHHHcCCcChHHHHHHHHHhhhhHH
Q 005376 372 AERFLKALVDIPFSFKRLEALLFMCTLQE 400 (699)
Q Consensus 372 aE~Fl~~l~~Ip~~~~Rl~~l~f~~~f~~ 400 (699)
+|-++..++-+|. ..|..-++|...+..
T Consensus 11 ~Eial~~iL~Lpi-p~r~~~~~~~~~~~~ 38 (216)
T KOG1962|consen 11 AEIALFLILLLPI-PPRRRRKIFKDRLKS 38 (216)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHH
Confidence 5666666666666 556666666555443
No 41
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=58.63 E-value=2e+02 Score=30.95 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=15.2
Q ss_pred chhhhcHHHHHHHHHHHHHHHHHH
Q 005376 623 EGLRLFTIVRDFFIMLDKACKQVK 646 (699)
Q Consensus 623 e~~~fF~iv~dFl~~l~ka~kEv~ 646 (699)
++.+.+..|..|=..|.+.|.+.-
T Consensus 257 e~l~~Lk~lv~AQl~Yhk~aae~L 280 (289)
T PF10455_consen 257 EPLRLLKELVKAQLEYHKKAAEAL 280 (289)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666667766665543
No 42
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=58.25 E-value=1.1e+02 Score=37.83 Aligned_cols=7 Identities=29% Similarity=0.700 Sum_probs=4.1
Q ss_pred ccccccc
Q 005376 246 FFWDKVL 252 (699)
Q Consensus 246 l~W~ki~ 252 (699)
-.|..|.
T Consensus 514 ~~W~~Il 520 (824)
T PRK07764 514 ERWPEIL 520 (824)
T ss_pred HHHHHHH
Confidence 3476664
No 43
>KOG4025 consensus Putative apoptosis related protein [Function unknown]
Probab=57.94 E-value=39 Score=32.91 Aligned_cols=77 Identities=26% Similarity=0.406 Sum_probs=42.2
Q ss_pred ChHHHhhHHHHHHhc---CCC-HHHHHHHhhcCCCCcHHHHHHHHhcCCCHH-HHHHHHhhccccccCChHHHHHHHH-c
Q 005376 307 DQKKAQNLSIMLRAL---NVT-LEEVCDALLEGNELPAELIQTLLKMAPTAE-EELKLRLFNGELSQLGPAERFLKAL-V 380 (699)
Q Consensus 307 d~kraqni~I~L~~l---~~s-~~ei~~al~~~~~L~~e~l~~Ll~~~Pt~e-E~~~l~~~~~d~~~L~~aE~Fl~~l-~ 380 (699)
|..-||.+.-.|-+- +-. ..++...|++..+|+...-+.++++.-+.+ +.-.+..|+.|..+|+.--.-+..+ +
T Consensus 31 d~~Aaq~LrtA~~k~Eq~nPgf~yD~~~~il~~~~l~VNl~Es~LRm~~~~d~ney~v~r~E~~fqeLn~ka~aLk~iLS 110 (207)
T KOG4025|consen 31 DPRAAQALRTALTKCEQANPGFLYDFTKVILDDSELSVNLQESYLRMHDTSDTNEYIVSRYEQDFQELNKKAIALKRILS 110 (207)
T ss_pred ChhHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhhccccchHHHHHHhhcccchhhHhhcCCCccHHHHHHHHHHHHHHHH
Confidence 455555554333322 111 245666777777888888888888873222 2233455566655666554444443 3
Q ss_pred CCc
Q 005376 381 DIP 383 (699)
Q Consensus 381 ~Ip 383 (699)
.||
T Consensus 111 riP 113 (207)
T KOG4025|consen 111 RIP 113 (207)
T ss_pred hCc
Confidence 454
No 44
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=56.76 E-value=33 Score=37.77 Aligned_cols=15 Identities=33% Similarity=0.321 Sum_probs=11.0
Q ss_pred ccccchhhHhhhhhc
Q 005376 22 RTSTSYCLVALLKYL 36 (699)
Q Consensus 22 ~~~~~~~~~~~~~~~ 36 (699)
+++|+.|.+..++-+
T Consensus 456 ~~~l~m~~~~~a~~~ 470 (563)
T KOG1785|consen 456 RTYLSMCSQSLAHDA 470 (563)
T ss_pred hhHHHHHHHHhhhhc
Confidence 567888988886544
No 45
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=55.98 E-value=2.2e+02 Score=33.34 Aligned_cols=55 Identities=22% Similarity=0.296 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccchhhhcHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 005376 582 TLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKSTKSL 656 (699)
Q Consensus 582 ~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YFged~~k~e~~~fF~iv~dFl~~l~ka~kEv~~~~kr~~k~~ 656 (699)
-+-.|.+....++..|......+..+-++ +..-...|.++|+++-..|++.++..
T Consensus 322 ~l~~~~~~~~~el~~L~~~~~~~~~Le~~--------------------~~~l~~~~~~~A~~Ls~~R~~~A~~L 376 (557)
T COG0497 322 DLLEYLDKIKEELAQLDNSEESLEALEKE--------------------VKKLKAELLEAAEALSAIRKKAAKEL 376 (557)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666665544433333322 23344566777777777777666543
No 46
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=55.78 E-value=1.1e+02 Score=24.97 Aligned_cols=66 Identities=12% Similarity=0.152 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccchhhhcHHHHHHHHHHHHHHHHHHhhhh
Q 005376 581 ETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPK 650 (699)
Q Consensus 581 ~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YFged~~k~e~~~fF~iv~dFl~~l~ka~kEv~~~~k 650 (699)
+.|..+..........|.....++...+..+...+.|++. ..|...+..|...+.+.++.+.+..+
T Consensus 7 ~~l~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~G~a~----~af~~~~~~~~~~~~~~~~~L~~~~~ 72 (86)
T PF06013_consen 7 EQLRAAAQQLQAQADELQSQLQQLESSIDSLQASWQGEAA----DAFQDKFEEWNQAFRQLNEALEELSQ 72 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBTSSTS----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666777777777777777767766654 23333444444444444444444433
No 47
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=54.66 E-value=1.8e+02 Score=29.94 Aligned_cols=54 Identities=20% Similarity=0.196 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCCccchhhhcHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 005376 596 WLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKSTKSLK 657 (699)
Q Consensus 596 ~L~e~~~~~~~~~k~l~~YFged~~k~e~~~fF~iv~dFl~~l~ka~kEv~~~~kr~~k~~k 657 (699)
...+...+-..++.++-+|||-.-+..+ -.|..+|.+--+|-+..+|.+.++.+
T Consensus 150 ~~~~~k~rkerl~eEvre~fGy~vDprd--------prF~eml~~kEkeeKKk~K~aKkk~k 203 (217)
T PF10147_consen 150 KAQAAKERKERLIEEVREHFGYKVDPRD--------PRFQEMLQEKEKEEKKKKKEAKKKEK 203 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcCCCCC--------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556677788899987654333 23777777666666655554443333
No 48
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=54.37 E-value=1.6e+02 Score=29.49 Aligned_cols=63 Identities=21% Similarity=0.238 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcccccCCCCccchhhhcHHHHHHHHHHHHHHHHHHhhhhhh
Q 005376 582 TLKSFVQNAEGDIMW----LLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKS 652 (699)
Q Consensus 582 ~m~~Fl~~Ae~~i~~----L~e~~~~~~~~~k~l~~YFged~~k~e~~~fF~iv~dFl~~l~ka~kEv~~~~kr~ 652 (699)
+|...+.+.+..+.. ..+...+...++.++-+|||---+.-+ -.|-.+|++--+|-+++.|.+
T Consensus 143 K~pq~~a~~~a~~~k~e~~a~a~~~r~erli~eiqe~fGy~vDprd--------~RF~emLqqkEkeekK~~Kea 209 (225)
T KOG4848|consen 143 KYPQTLAKYEASLVKQEQEADAKEVRLERLIREIQEYFGYWVDPRD--------PRFEEMLQQKEKEEKKAVKEA 209 (225)
T ss_pred HhHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHhCccCCCCC--------HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444443332 233344566677788889986433222 135566666555555554443
No 49
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=54.02 E-value=1.8e+02 Score=36.10 Aligned_cols=32 Identities=19% Similarity=0.175 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHhcccccCCC
Q 005376 410 EILEVACKELRNSRLFLKLLEAVLKTGNRMNDGT 443 (699)
Q Consensus 410 ~~l~~A~~~l~~S~~~~~lL~~vL~~GN~lN~gt 443 (699)
+.++.|+..++-+..+...|++| +||++-..+
T Consensus 599 ~~v~~al~Li~yd~~l~~amefv--FG~tlVc~~ 630 (1174)
T KOG0933|consen 599 DNVELALSLIGYDDELKKAMEFV--FGSTLVCDS 630 (1174)
T ss_pred chHHHHHHHhcCCHHHHHHHHHH--hCceEEecC
Confidence 45778888899999999999997 899987766
No 50
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=51.63 E-value=1.1e+02 Score=28.84 Aligned_cols=73 Identities=19% Similarity=0.293 Sum_probs=44.5
Q ss_pred cchhhhHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005376 528 SHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSL 607 (699)
Q Consensus 528 ~~l~~eL~~V~kAa~vd~d~L~~~v~~L~~~l~~~~~~l~~~~~~~~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~ 607 (699)
.++.+-|..+-.+...+.+.|.+.+++++..+.++-..+.+- ...+..|.+..+ +|..|.....++..+
T Consensus 34 ~R~Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~er----------qk~~~k~ae~L~-kv~els~~L~~~~~l 102 (131)
T PF10158_consen 34 SRYQEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMVER----------QKRFAKFAEQLE-KVNELSQQLSRCQSL 102 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 456667777778888888888888888888877765544321 223344433222 355555555555555
Q ss_pred HHhh
Q 005376 608 VKST 611 (699)
Q Consensus 608 ~k~l 611 (699)
+.++
T Consensus 103 L~~~ 106 (131)
T PF10158_consen 103 LNQT 106 (131)
T ss_pred HHHH
Confidence 5444
No 51
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=51.15 E-value=2.3e+02 Score=34.20 Aligned_cols=26 Identities=4% Similarity=-0.005 Sum_probs=14.7
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHH
Q 005376 576 NSGFHETLKSFVQNAEGDIMWLLEEE 601 (699)
Q Consensus 576 ~~~F~~~m~~Fl~~Ae~~i~~L~e~~ 601 (699)
|+++...+..-.++|...++.+....
T Consensus 267 edRW~~vFr~l~~q~~~m~esver~~ 292 (683)
T PF08580_consen 267 EDRWNIVFRNLGRQAQKMCESVERSL 292 (683)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666665555554443
No 52
>PLN03099 PIR Protein PIR; Provisional
Probab=50.97 E-value=2.4e+02 Score=35.86 Aligned_cols=173 Identities=14% Similarity=0.134 Sum_probs=85.6
Q ss_pred cceeecChHHHhhHHHHHHhcCCCHHHHHHHhh-------cCCCCcHHHHHHHHhcCCCHHHHHHHHh----hccccccC
Q 005376 301 QYIQIIDQKKAQNLSIMLRALNVTLEEVCDALL-------EGNELPAELIQTLLKMAPTAEEELKLRL----FNGELSQL 369 (699)
Q Consensus 301 ~~v~iLd~kraqni~I~L~~l~~s~~ei~~al~-------~~~~L~~e~l~~Ll~~~Pt~eE~~~l~~----~~~d~~~L 369 (699)
+.++|||+.-..-..|+--+-+ ..+-+|+-+. .-|..++.++-+|.+++---..+..|++ ..+|.+..
T Consensus 105 ~t~eVLepEi~KL~~fm~fq~~-Ai~~f~~e~krl~~~Ekrk~f~Sea~l~tl~k~lnmfa~LD~LKNmKAsi~NDfS~y 183 (1232)
T PLN03099 105 ETYQVLDLEIGRLREIQRWQSS-AASKLAADMQRFSRPERRINGPTVTHMWSMLKLLDVLLQLDHLKNAKASIPNDFSWY 183 (1232)
T ss_pred HHHHhccHHHHHHHHHHHHHHH-HHHHHHHHHHHHhchHhhhccccHHHHHHHHHHHHHHHHHHHHhhhhccccccHHHH
Confidence 3577888876665555432111 1222333332 2345677777777765543333333332 35678888
Q ss_pred ChH-HHHHHHHcCCcChHHHHHHH-HHhhhhHHHHHHHHH----------HHHHHHHHHHHHhhcHHH-----HHHHHHH
Q 005376 370 GPA-ERFLKALVDIPFSFKRLEAL-LFMCTLQEEVSATKE----------SFEILEVACKELRNSRLF-----LKLLEAV 432 (699)
Q Consensus 370 ~~a-E~Fl~~l~~Ip~~~~Rl~~l-~f~~~f~~~~~~l~~----------~l~~l~~A~~~l~~S~~~-----~~lL~~v 432 (699)
-++ .||+..+.+-...++-++-| +|..+-..-...++. .|..|..-|.+..+++.. +..|-.|
T Consensus 184 kRAf~qfl~~~~d~~~~~e~~q~Ls~FLatqn~I~~~Lk~~l~~i~gyediL~~ivn~C~~~yE~~~yl~p~EKH~LlrV 263 (1232)
T PLN03099 184 KRTFTQVSTQWPDTDTMREELDDLQIFLSTRWAILLNLQAEMFRVNNVEDILQVLIVFCLESLESDFVLLYSERHILLRV 263 (1232)
T ss_pred HHHHHHHHHhcCCchhHHHHHhhHHHHhcchHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhccCceecCccceeEEEe
Confidence 899 99999888855555543333 333332222333333 333344444443333221 2233345
Q ss_pred HHhcccccCCCCCcceeeeeccccccccccccCCCCccHHHHHH
Q 005376 433 LKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVV 476 (699)
Q Consensus 433 L~~GN~lN~gt~rg~A~GFkL~sL~KL~d~Ks~d~k~tLLh~lv 476 (699)
+.+|=||=.++.+.+..-||--+|.||..+= .....++|.+.
T Consensus 264 m~f~l~L~ds~~k~~~~~~Kri~i~rldkiF--~~~y~I~~~m~ 305 (1232)
T PLN03099 264 LPVLVVLATSSEKEGESLFKRIKINRLINIF--QREYLIVNHMG 305 (1232)
T ss_pred eeeeEEEecccccchHHHhhhccHHHHHHHh--cchHHHHHhHH
Confidence 6677777664434333335544555554332 22334445543
No 53
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=50.95 E-value=53 Score=31.55 Aligned_cols=88 Identities=17% Similarity=0.095 Sum_probs=50.7
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHhhcccc---------ccCChHHHHHHHHcCCcChHHHHHHHHHhhhhHHHHHHHHHHH
Q 005376 339 PAELIQTLLKMAPTAEEELKLRLFNGEL---------SQLGPAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESF 409 (699)
Q Consensus 339 ~~e~l~~Ll~~~Pt~eE~~~l~~~~~d~---------~~L~~aE~Fl~~l~~Ip~~~~Rl~~l~f~~~f~~~~~~l~~~l 409 (699)
-.....+|..+.|+-+|+..+...-++. ..|..++..+....++.++ . ++-+..|...+.++...|
T Consensus 36 l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~r~----n-~~kk~~y~~Ki~~le~~l 110 (147)
T PF05659_consen 36 LKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSKVRRW----N-LYKKPRYARKIEELEESL 110 (147)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhccccHH----H-HHhhHhHHHHHHHHHHHH
Confidence 3445667888999999988776432221 1233444444444444422 1 123445677788888887
Q ss_pred HHHHHHHHHHhhcHHHHHHHHH
Q 005376 410 EILEVACKELRNSRLFLKLLEA 431 (699)
Q Consensus 410 ~~l~~A~~~l~~S~~~~~lL~~ 431 (699)
..+...--++...+.+++++..
T Consensus 111 ~~f~~v~~q~~~~~D~~~l~~~ 132 (147)
T PF05659_consen 111 RRFIQVDLQLHQLRDIKELLAK 132 (147)
T ss_pred HHHhcchhHHHHHHHHHHHHHH
Confidence 7776665555555555555444
No 54
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=50.61 E-value=54 Score=28.43 Aligned_cols=75 Identities=8% Similarity=0.127 Sum_probs=45.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccchhhhcHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005376 578 GFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKST 653 (699)
Q Consensus 578 ~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YFged~~k~e~~~fF~iv~dFl~~l~ka~kEv~~~~kr~~ 653 (699)
+|...+..=++.....+..+......+...+.++...|.+........+.|.... ....+..+.+++....++..
T Consensus 7 Gl~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~ 81 (92)
T PF14712_consen 7 GLLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQ 81 (92)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHH
Confidence 3555556666666666666666666666666666555544333233344455555 77777777777776666554
No 55
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=50.20 E-value=86 Score=33.13 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=9.0
Q ss_pred hhHHHHHHHhhhcHHHHHHHHH
Q 005376 532 SELENVKKAAAIDADSLTGTVS 553 (699)
Q Consensus 532 ~eL~~V~kAa~vd~d~L~~~v~ 553 (699)
+.|..+++ ++++++=|...+.
T Consensus 156 ~~l~DLes-a~vkV~WLR~~L~ 176 (269)
T PF05278_consen 156 ATLKDLES-AKVKVDWLRSKLE 176 (269)
T ss_pred HHHHHHHH-cCcchHHHHHHHH
Confidence 33444443 3455554444333
No 56
>PRK11637 AmiB activator; Provisional
Probab=49.68 E-value=1.6e+02 Score=33.13 Aligned_cols=28 Identities=11% Similarity=0.138 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005376 584 KSFVQNAEGDIMWLLEEEKRIMSLVKST 611 (699)
Q Consensus 584 ~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l 611 (699)
..=+...+.+|..+++......+.++..
T Consensus 102 ~~ei~~l~~eI~~~q~~l~~~~~~l~~r 129 (428)
T PRK11637 102 NKQIDELNASIAKLEQQQAAQERLLAAQ 129 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444333
No 57
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=49.34 E-value=1.9e+02 Score=25.69 Aligned_cols=30 Identities=10% Similarity=0.095 Sum_probs=15.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005376 578 GFHETLKSFVQNAEGDIMWLLEEEKRIMSL 607 (699)
Q Consensus 578 ~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~ 607 (699)
...+.|..-+..+......+....+++...
T Consensus 43 ~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~ 72 (117)
T smart00503 43 ELREKLERLIDDIKRLAKEIRAKLKELEKE 72 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556655555555555555555444433
No 58
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=47.18 E-value=2.9e+02 Score=27.16 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005376 399 QEEVSATKESFEILEVACKEL 419 (699)
Q Consensus 399 ~~~~~~l~~~l~~l~~A~~~l 419 (699)
+++++++...+..+...++.|
T Consensus 25 D~~f~~~~~~~~~~~~~~~~l 45 (229)
T PF03114_consen 25 DEEFEELEEKFKQLEESIKKL 45 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555544
No 59
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=46.17 E-value=1.2e+02 Score=34.22 Aligned_cols=94 Identities=14% Similarity=0.176 Sum_probs=40.0
Q ss_pred HHHhhhhhhhcchhhhHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhh----ccccCCCcchhhHHHHHHHHHHHH
Q 005376 518 HYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTD----MKNLGENSGFHETLKSFVQNAEGD 593 (699)
Q Consensus 518 ~~~~lgl~~v~~l~~eL~~V~kAa~vd~d~L~~~v~~L~~~l~~~~~~l~~~----~~~~~~~~~F~~~m~~Fl~~Ae~~ 593 (699)
.|-++-++.+..+..|+.+++++.++ +...++++...++++.++++.. ..-..+.+-...+++.-.++-++.
T Consensus 354 ~~~e~~~~e~~~l~~~~~~~e~~kk~----~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~ 429 (493)
T KOG0804|consen 354 QYYELLITEADSLKQESSDLEAEKKI----VERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEA 429 (493)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33333445555555666655554332 2223333333333333332110 001112233444444444444444
Q ss_pred HHHHHHHHHHHHHHHHhhcccc
Q 005376 594 IMWLLEEEKRIMSLVKSTGDYF 615 (699)
Q Consensus 594 i~~L~e~~~~~~~~~k~l~~YF 615 (699)
+....+....+.+.+++++-|+
T Consensus 430 ~~s~d~~I~dLqEQlrDlmf~l 451 (493)
T KOG0804|consen 430 LGSKDEKITDLQEQLRDLMFFL 451 (493)
T ss_pred HHHHHHHHHHHHHHHHhHheeh
Confidence 4444444444555555555554
No 60
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=45.96 E-value=3.5e+02 Score=28.75 Aligned_cols=16 Identities=38% Similarity=0.559 Sum_probs=11.4
Q ss_pred eeeecccccccccccc
Q 005376 449 QAFKLDTLLKLSDVKG 464 (699)
Q Consensus 449 ~GFkL~sL~KL~d~Ks 464 (699)
.+|+++.=.|+.|+|.
T Consensus 106 ~~~~~~l~~k~~dlk~ 121 (267)
T PF10234_consen 106 SLFKFDLSSKIQDLKA 121 (267)
T ss_pred chhhcccchhhhhHHH
Confidence 5666766677888876
No 61
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=45.49 E-value=83 Score=29.20 Aligned_cols=45 Identities=22% Similarity=0.214 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHhhhhccccCCCcchhhHHHHHHHHHHHHHH
Q 005376 551 TVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIM 595 (699)
Q Consensus 551 ~v~~L~~~l~~~~~~l~~~~~~~~~~~~F~~~m~~Fl~~Ae~~i~ 595 (699)
+|.+|..++.++...++..+..++....|.+.|+.+...--.+|.
T Consensus 7 Ei~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkDis 51 (121)
T PF03310_consen 7 EISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKDIS 51 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Confidence 333444444444433333222222233466666666544444433
No 62
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=44.89 E-value=5e+02 Score=29.24 Aligned_cols=11 Identities=36% Similarity=0.555 Sum_probs=8.5
Q ss_pred CccHHHHHHHH
Q 005376 468 KTTLLHFVVQE 478 (699)
Q Consensus 468 k~tLLh~lv~~ 478 (699)
..||.+||-+.
T Consensus 112 ~ktL~DFVd~~ 122 (412)
T PF04108_consen 112 PKTLYDFVDED 122 (412)
T ss_pred CCcHHHhcCHH
Confidence 45999999764
No 63
>KOG4462 consensus WASP-interacting protein VRP1/WIP, contains WH2 domain [Cytoskeleton]
Probab=44.54 E-value=4.7e+02 Score=28.81 Aligned_cols=8 Identities=25% Similarity=0.144 Sum_probs=4.6
Q ss_pred cccccccC
Q 005376 81 KEEKLDIG 88 (699)
Q Consensus 81 k~~k~g~~ 88 (699)
|++|+..+
T Consensus 43 KLKK~~tN 50 (437)
T KOG4462|consen 43 KLKKATTN 50 (437)
T ss_pred eecceecc
Confidence 66666543
No 64
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=44.51 E-value=1.6e+02 Score=28.94 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005376 585 SFVQNAEGDIMWLLEEEKRIMSLVKSTG 612 (699)
Q Consensus 585 ~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~ 612 (699)
.+.+..+.++..+.+.++.+.+.+.++.
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666665555443
No 65
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=44.33 E-value=1e+02 Score=30.79 Aligned_cols=46 Identities=30% Similarity=0.386 Sum_probs=27.8
Q ss_pred HHHhhhhhhhcchh-hhHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhh
Q 005376 518 HYRNLGLQAVSHLS-SELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLN 567 (699)
Q Consensus 518 ~~~~lgl~~v~~l~-~eL~~V~kAa~vd~d~L~~~v~~L~~~l~~~~~~l~ 567 (699)
..|.-+|..|+.+. .+|.....+ -+.|..++.+|..++..+++.+.
T Consensus 73 qqR~~~L~qvN~lLReQLEq~~~~----N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 73 QQRSEELAQVNALLREQLEQARKA----NEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455443 446665543 46788888888888877766553
No 66
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=44.00 E-value=2.8e+02 Score=26.00 Aligned_cols=32 Identities=16% Similarity=0.082 Sum_probs=19.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005376 577 SGFHETLKSFVQNAEGDIMWLLEEEKRIMSLV 608 (699)
Q Consensus 577 ~~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~ 608 (699)
....+.|..-+......+..+....+.+....
T Consensus 40 ~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~ 71 (151)
T cd00179 40 PELKQELESLVQEIKKLAKEIKGKLKELEESN 71 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666665555554443
No 67
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=43.50 E-value=19 Score=44.56 Aligned_cols=13 Identities=23% Similarity=0.542 Sum_probs=5.9
Q ss_pred HHHHHHHHhcCCC
Q 005376 340 AELIQTLLKMAPT 352 (699)
Q Consensus 340 ~e~l~~Ll~~~Pt 352 (699)
.-.+.+|++..|-
T Consensus 254 lp~m~NL~Rl~~~ 266 (2365)
T COG5178 254 LPAMHNLLRLMPM 266 (2365)
T ss_pred cHHHHHHHhcccc
Confidence 3344455544443
No 68
>PRK11637 AmiB activator; Provisional
Probab=43.22 E-value=2.3e+02 Score=31.99 Aligned_cols=28 Identities=7% Similarity=-0.082 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005376 580 HETLKSFVQNAEGDIMWLLEEEKRIMSL 607 (699)
Q Consensus 580 ~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~ 607 (699)
...+..=|..++.++....+.+.+....
T Consensus 105 i~~l~~eI~~~q~~l~~~~~~l~~rlra 132 (428)
T PRK11637 105 IDELNASIAKLEQQQAAQERLLAAQLDA 132 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667778888888777666543333
No 69
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=42.88 E-value=1.3e+02 Score=30.97 Aligned_cols=121 Identities=11% Similarity=0.115 Sum_probs=66.4
Q ss_pred cchhhhHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhccccC-----C---CcchhhHHHHHHHHHHHHHHHHHH
Q 005376 528 SHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLG-----E---NSGFHETLKSFVQNAEGDIMWLLE 599 (699)
Q Consensus 528 ~~l~~eL~~V~kAa~vd~d~L~~~v~~L~~~l~~~~~~l~~~~~~~~-----~---~~~F~~~m~~Fl~~Ae~~i~~L~e 599 (699)
..|..++..-.+-..-+...+..........+.+++..++..+..++ . ..+=.+++..-++.++.++.....
T Consensus 92 ~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~ 171 (236)
T cd07651 92 AAFASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADCSKINSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRR 171 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 34555555544444444445555555555555555555433221110 0 011146777777788888777777
Q ss_pred HHHHHHHHHHhhcccccCCCCc-------cc--hhhhcH-HHHHHHHHHHHHHHHHHhh
Q 005376 600 EEKRIMSLVKSTGDYFHGNAGK-------DE--GLRLFT-IVRDFFIMLDKACKQVKDA 648 (699)
Q Consensus 600 ~~~~~~~~~k~l~~YFged~~k-------~e--~~~fF~-iv~dFl~~l~ka~kEv~~~ 648 (699)
+|......+..+-..|..+... .+ -..||. .+..|...+..+|-...++
T Consensus 172 ~Y~~~v~~~~~~~~~~~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~~a~~~s~~cv~~d~~ 230 (236)
T cd07651 172 DYQNAVKALRELNEIWNREWKAALDDFQDLEEERIQFLKSNCWTFANNISTLCVDDDES 230 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 7777766666665544443321 11 134555 5777888888877665544
No 70
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=42.49 E-value=4.2e+02 Score=27.68 Aligned_cols=51 Identities=14% Similarity=0.239 Sum_probs=24.5
Q ss_pred hhHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcchhhHHHHHHHHHH
Q 005376 532 SELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAE 591 (699)
Q Consensus 532 ~eL~~V~kAa~vd~d~L~~~v~~L~~~l~~~~~~l~~~~~~~~~~~~F~~~m~~Fl~~Ae 591 (699)
..+..++......+..+...|.....+|....+.. +..|...|++++.-++
T Consensus 96 ~~ws~lE~~l~~~L~~~a~~~~~~s~~l~~l~~~~---------~~~yl~~Lke~~~Y~~ 146 (240)
T cd07667 96 STWSGLEGELAEPLEGVSACIGNCSTALEELTEDM---------TEDFLPVLREYILYSE 146 (240)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------hHHHHHHHHHHHHHHH
Confidence 34455554444444444555555555544433321 2356666666554443
No 71
>PHA03246 large tegument protein UL36; Provisional
Probab=41.18 E-value=1.2e+03 Score=32.53 Aligned_cols=114 Identities=12% Similarity=0.145 Sum_probs=72.4
Q ss_pred cchhhhHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhh-ccc----cCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 005376 528 SHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTD-MKN----LGENSGFHETLKSFVQNAEGDIMWLLEEEK 602 (699)
Q Consensus 528 ~~l~~eL~~V~kAa~vd~d~L~~~v~~L~~~l~~~~~~l~~~-~~~----~~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~~ 602 (699)
..+.-=|..|+++..+|...+ ..|..++..++.- +.. .+.-..|.+.+... .+.+.+++.|..+..
T Consensus 1724 TQaALLL~~vEet~ELDvqAV--------eWL~hAr~IIDSHpLT~rIDg~GPm~~yaeRIDaL-~~LR~rLd~Lr~~L~ 1794 (3095)
T PHA03246 1724 TQAALLLTKVEETKELDTQTV--------EWLKHAESVIDSHDLTVRIDESGPMTIYAERIDAL-VRLENRLAELKSELA 1794 (3095)
T ss_pred HHHHHHHHHhhhccccCHHHH--------HHHHHHHHHhccCccccccCCCCCcHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 334444777888877776654 3566677766532 111 12224577776654 355678888888888
Q ss_pred HHHHHHHhhcccccCCCCc-cchhhhcHHHHHHHHHHHHHHHHHHhhhh
Q 005376 603 RIMSLVKSTGDYFHGNAGK-DEGLRLFTIVRDFFIMLDKACKQVKDAPK 650 (699)
Q Consensus 603 ~~~~~~k~l~~YFged~~k-~e~~~fF~iv~dFl~~l~ka~kEv~~~~k 650 (699)
.+...+.+++..|+-+.+. +...+=|..-++=+..++-+...|...+.
T Consensus 1795 ~AEaaWDeaW~~F~r~~~~~d~S~eg~~~A~~~a~aLqas~n~V~~LRa 1843 (3095)
T PHA03246 1795 LAEVAWDDTWSTFIHDKDRIDKSSEGFSAARESAARAKVSTNAINALRN 1843 (3095)
T ss_pred HHHhhHHHHHHHHhhccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888899999999876543 34456665666666666666665555443
No 72
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=39.40 E-value=2.6e+02 Score=26.19 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=14.3
Q ss_pred chhhhHHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q 005376 529 HLSSELENVKKAAAIDADSLTGTVSKLGHALLKT 562 (699)
Q Consensus 529 ~l~~eL~~V~kAa~vd~d~L~~~v~~L~~~l~~~ 562 (699)
.+...|.+|..+..--=+.|...|..|...|.+.
T Consensus 47 ~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~ 80 (126)
T PF07889_consen 47 SVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQ 80 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3344444444332222234444455555444443
No 73
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=39.09 E-value=1.6e+02 Score=30.11 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 005376 397 TLQEEVSATKESFEILEVACKEL 419 (699)
Q Consensus 397 ~f~~~~~~l~~~l~~l~~A~~~l 419 (699)
++.+++.++...++....+++.|
T Consensus 4 ~l~ddf~~le~~~d~~~~~~~~l 26 (215)
T cd07593 4 TLSEEFLELEKEIELRKEGMERL 26 (215)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555554
No 74
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=38.35 E-value=5e+02 Score=30.56 Aligned_cols=46 Identities=17% Similarity=0.230 Sum_probs=24.8
Q ss_pred hcccccCCCCCc--ceeeeeccccc---cccccccCC---CCccHHHHHHHHHH
Q 005376 435 TGNRMNDGTFRG--GAQAFKLDTLL---KLSDVKGVD---GKTTLLHFVVQEII 480 (699)
Q Consensus 435 ~GN~lN~gt~rg--~A~GFkL~sL~---KL~d~Ks~d---~k~tLLh~lv~~i~ 480 (699)
+.+|.=.|.+|| .|.||.+.+=. .+.+-|+-| .+.-+-.|=|++|.
T Consensus 243 ~s~~~f~~d~~~~iPadGfs~~a~qiWd~Ie~NKDLDLPtqqvlvAt~rceEIa 296 (772)
T KOG2203|consen 243 ISPYGFAGDYHGVIPADGFSFYAEQIWDVIEENKDLDLPTQQVLVATVRCEEIA 296 (772)
T ss_pred CCCCccccccCCcccccchhhhHHHHHHHHHhCcCCCCchhhhHHhhhhHHHHH
Confidence 445555566666 68999885433 223344444 23344455556553
No 75
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=37.48 E-value=2.7e+02 Score=32.29 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=17.4
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHhhhhhh
Q 005376 625 LRLFTIVRDFFIMLDKACKQVKDAPKKS 652 (699)
Q Consensus 625 ~~fF~iv~dFl~~l~ka~kEv~~~~kr~ 652 (699)
..+=++-.+|+.+|..+..++++.-++.
T Consensus 436 ~nLPGlPe~~l~l~~~~~~~i~~l~~eL 463 (570)
T COG4477 436 SNLPGLPETFLSLFFTAGHEIQDLMKEL 463 (570)
T ss_pred cCCCCCcHHHHHHHHhhhhHHHHHHHHH
Confidence 3444566667777777777666665544
No 76
>PF02252 PA28_beta: Proteasome activator pa28 beta subunit; InterPro: IPR003186 PA28 activator complex (also known as 11S regulator of 20S proteasome) is a ring shaped hexameric structure of alternating alpha (PA28alpha) and beta (PA28beta) subunits. The catalytic properties of PA28alpha and PA28beta-activated proteosome are similar [, ]. This entry represents the beta subunit. The activator complex binds to the 20S proteasome and stimulates peptidase activity in and ATP-independent manner.; GO: 0008537 proteasome activator complex; PDB: 1AVO_N.
Probab=37.05 E-value=3.9e+02 Score=25.78 Aligned_cols=37 Identities=5% Similarity=0.169 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccCCCcchhhHHH
Q 005376 548 LTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLK 584 (699)
Q Consensus 548 L~~~v~~L~~~l~~~~~~l~~~~~~~~~~~~F~~~m~ 584 (699)
|..++..|...+..++.++.-.+..+++++.|=-.+.
T Consensus 18 vk~ei~~l~e~~~~vk~WI~l~IPkiEDGNNFGV~VQ 54 (150)
T PF02252_consen 18 VKPEIRELIEKCNTVKMWIQLLIPKIEDGNNFGVSVQ 54 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-----SS--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccccCCcccHHHH
Confidence 3445666777777777777766777788888865553
No 77
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.78 E-value=3.6e+02 Score=33.48 Aligned_cols=10 Identities=40% Similarity=0.753 Sum_probs=4.7
Q ss_pred ccccccccCC
Q 005376 68 LSLSDYSVGS 77 (699)
Q Consensus 68 ~s~~~~s~~~ 77 (699)
++++.|-+..
T Consensus 914 ~~~~~~~i~~ 923 (1080)
T KOG0566|consen 914 LSLDGYKINP 923 (1080)
T ss_pred cCccccccCC
Confidence 4444455444
No 78
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=36.05 E-value=6.8e+02 Score=28.20 Aligned_cols=16 Identities=31% Similarity=0.428 Sum_probs=7.0
Q ss_pred hhhhcchhhhHHHHHH
Q 005376 524 LQAVSHLSSELENVKK 539 (699)
Q Consensus 524 l~~v~~l~~eL~~V~k 539 (699)
++||.+=..||..|-+
T Consensus 243 l~Vl~~Da~El~~V~~ 258 (412)
T PF04108_consen 243 LEVLENDAQELPDVVK 258 (412)
T ss_pred HHHHHcchhhHHHHHH
Confidence 3444444444444443
No 79
>PF04344 CheZ: Chemotaxis phosphatase, CheZ; InterPro: IPR007439 This family represents the bacterial chemotaxis phosphatase, CheZ. This protein forms a dimer characterised by a long four-helix bundle, composed of two helices from each monomer. CheZ dephosphorylates CheY in a reaction that is essential to maintain a continuous chemotactic response to environmental changes. It is thought that CheZ's conserved residue Gln 147 orientates a water molecule for nucleophilic attack at the CheY active site. ; GO: 0003824 catalytic activity, 0050920 regulation of chemotaxis, 0009288 bacterial-type flagellum; PDB: 1KMI_Z 2FMK_B 2PMC_F.
Probab=35.76 E-value=3.2e+02 Score=27.93 Aligned_cols=24 Identities=21% Similarity=-0.029 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005376 585 SFVQNAEGDIMWLLEEEKRIMSLV 608 (699)
Q Consensus 585 ~Fl~~Ae~~i~~L~e~~~~~~~~~ 608 (699)
..++.+......|.+...++...+
T Consensus 59 ~~ve~~~p~~~~l~~~~~~l~~~w 82 (214)
T PF04344_consen 59 NAVEEALPLQDELREEAEELKARW 82 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 80
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=35.75 E-value=32 Score=42.73 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=14.7
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhc
Q 005376 414 VACKELRNSRLFLKLLEAVLKTG 436 (699)
Q Consensus 414 ~A~~~l~~S~~~~~lL~~vL~~G 436 (699)
+-++++|.++.++.|.-+-..-|
T Consensus 627 klM~QIraCKd~KhliyY~fn~g 649 (2365)
T COG5178 627 KLMKQIRACKDWKHLIYYAFNEG 649 (2365)
T ss_pred HHHHHHHHhhhHHHHHHHHhhcC
Confidence 44566777777777777654433
No 81
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=35.74 E-value=1.1e+03 Score=30.43 Aligned_cols=40 Identities=30% Similarity=0.440 Sum_probs=23.3
Q ss_pred hHHHhhHHHHHHhc----CCC---HHHHHHHhhcCC-CCcHHHHHHHH
Q 005376 308 QKKAQNLSIMLRAL----NVT---LEEVCDALLEGN-ELPAELIQTLL 347 (699)
Q Consensus 308 ~kraqni~I~L~~l----~~s---~~ei~~al~~~~-~L~~e~l~~Ll 347 (699)
.+..+||.+.++-| +-+ ++++.+.++.++ .++.|.|+.|-
T Consensus 1470 ~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~ 1517 (1758)
T KOG0994|consen 1470 NRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLT 1517 (1758)
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 45567777766665 233 344555666655 36666666664
No 82
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=35.08 E-value=8.1e+02 Score=28.80 Aligned_cols=28 Identities=7% Similarity=0.068 Sum_probs=13.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 005376 391 ALLFMCTLQEEVSATKESFEILEVACKE 418 (699)
Q Consensus 391 ~l~f~~~f~~~~~~l~~~l~~l~~A~~~ 418 (699)
+|-....+++.+.+++..+..+..+...
T Consensus 362 vw~~~l~~~~~f~~le~~~~~~~~l~~~ 389 (581)
T KOG0995|consen 362 VWELKLEIEDFFKELEKKFIDLNSLIRR 389 (581)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555554444333
No 83
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=34.64 E-value=2.8e+02 Score=34.64 Aligned_cols=66 Identities=24% Similarity=0.226 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH-hcccccCCCCCcceeeeeccccccccccccCCCCccHHHHHHHHHHh
Q 005376 403 SATKESFEILEVACKELRNSRLFLKLLEAVLK-TGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIR 481 (699)
Q Consensus 403 ~~l~~~l~~l~~A~~~l~~S~~~~~lL~~vL~-~GN~lN~gt~rg~A~GFkL~sL~KL~d~Ks~d~k~tLLh~lv~~i~~ 481 (699)
..+.+.+..+..+.+.-.++-.|.-++.++.. .|+ +|.+. |.++.+....+++.++..|+++.|..
T Consensus 45 ~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~-~~~~~------------lv~~l~~~~~~~~~~~ve~~~~~i~~ 111 (906)
T PRK14720 45 NLTDEAKDICEEHLKEHKKSISALYISGILSLSRRP-LNDSN------------LLNLIDSFSQNLKWAIVEHICDKILL 111 (906)
T ss_pred CCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcc-hhhhh------------hhhhhhhcccccchhHHHHHHHHHHh
Confidence 33444555566666666667677766666332 234 22222 33677777777778889998876654
No 84
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=33.76 E-value=6.1e+02 Score=29.93 Aligned_cols=39 Identities=28% Similarity=0.235 Sum_probs=22.9
Q ss_pred HHHHHcCCcChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005376 375 FLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKEL 419 (699)
Q Consensus 375 Fl~~l~~Ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l 419 (699)
|--..++-|.+++||+|.- -+++....-|..|..-|++|
T Consensus 8 fsd~~ldsp~fre~l~~he------~el~~tnkfik~~ikdg~~l 46 (812)
T KOG1451|consen 8 FSDCYLDSPDFRERLKCHE------VELDRTNKFIKELIKDGKEL 46 (812)
T ss_pred ccccccCChHHHHHhhHHH------HHHHHHHHHHHHHHHhHHHH
Confidence 4445678899999999853 33444444444444444444
No 85
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=33.43 E-value=3.1e+02 Score=23.54 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=26.3
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhh
Q 005376 535 ENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNT 568 (699)
Q Consensus 535 ~~V~kAa~vd~d~L~~~v~~L~~~l~~~~~~l~~ 568 (699)
..+.+-..++...+...+..|.+.|.+++..+..
T Consensus 13 ~~~~~d~~~~~kd~~~~~~~lk~Klq~ar~~i~~ 46 (83)
T PF07544_consen 13 HQISKDPPLSSKDLDTATGSLKHKLQKARAAIRE 46 (83)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333336677888889999999999999988754
No 86
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=33.15 E-value=5.2e+02 Score=26.03 Aligned_cols=68 Identities=13% Similarity=0.088 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccchhhhcHHHHHHHHHHHHHHHHHHhhhhhh
Q 005376 581 ETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKS 652 (699)
Q Consensus 581 ~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YFged~~k~e~~~fF~iv~dFl~~l~ka~kEv~~~~kr~ 652 (699)
+.+..=+..++.++..+...+..+.+.++.=+..|.. .-..+|=.+|.+|+...-...+++-+.|+..
T Consensus 166 ~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~----~k~~d~k~~l~~~~~~~i~~~~~~~~~We~~ 233 (236)
T PF09325_consen 166 EQAENEIEEAERRVEQAKDEFEEISENIKKELERFEK----EKVKDFKSMLEEYAESQIEYQKKMLEAWETF 233 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3455566677777777777787777777766666732 2344566678888887777777777777653
No 87
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=33.10 E-value=2.7e+02 Score=30.17 Aligned_cols=85 Identities=21% Similarity=0.234 Sum_probs=57.5
Q ss_pred cchHHHHhhhhhhhcchhhhHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcchhhHHHHHHHHHHHH
Q 005376 514 ETDEHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGD 593 (699)
Q Consensus 514 ~~~e~~~~lgl~~v~~l~~eL~~V~kAa~vd~d~L~~~v~~L~~~l~~~~~~l~~~~~~~~~~~~F~~~m~~Fl~~Ae~~ 593 (699)
+.++.|++. +-...+|.|=+.+..-..|.|...+..|...+...++.+.+-++ =++.++.++.....+
T Consensus 88 evEekyrkA-----Mv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~-------elEr~K~~~d~L~~e 155 (302)
T PF09738_consen 88 EVEEKYRKA-----MVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIR-------ELERQKRAHDSLREE 155 (302)
T ss_pred HHHHHHHHH-----HHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 567788872 22335677767666677778888888888887777666543222 256778888888888
Q ss_pred HHHHHHHHHHHHHHHHh
Q 005376 594 IMWLLEEEKRIMSLVKS 610 (699)
Q Consensus 594 i~~L~e~~~~~~~~~k~ 610 (699)
+..|++..+.-..++.+
T Consensus 156 ~~~Lre~L~~rdeli~k 172 (302)
T PF09738_consen 156 LDELREQLKQRDELIEK 172 (302)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88887777665555544
No 88
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.46 E-value=8e+02 Score=28.32 Aligned_cols=202 Identities=16% Similarity=0.182 Sum_probs=0.0
Q ss_pred CcHHHHHHHHhcCCCHHHHHHHHhhccccccCChHHHHH-HHHcCCcChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 005376 338 LPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFL-KALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVAC 416 (699)
Q Consensus 338 L~~e~l~~Ll~~~Pt~eE~~~l~~~~~d~~~L~~aE~Fl-~~l~~Ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~ 416 (699)
+....++.++...|.--+....+....|. .+.++.+ .-|...+.+..|++| =++++..-+..|..+..-+
T Consensus 294 ~~~~q~e~~L~~kP~gVd~~~W~QA~~dn---p~s~kliPVpvvGF~dL~~R~K~------Q~q~~~~~r~ri~~i~e~v 364 (508)
T KOG3091|consen 294 LSVAQTEAYLETKPAGVDQRIWRQAMKDN---PPSNKLIPVPVVGFEDLRQRLKV------QDQEVKQHRIRINAIGERV 364 (508)
T ss_pred cCHHHHHHHhcCCCCCcCHHHHHHHhhcC---CCcccccceeccchHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhcHHHHHHHHHHHHhcccccCCCCCcceeeeeccccccccccccCCCCccHHHHHHHHHHhhhhhhHHhhhhcccc
Q 005376 417 KELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRSEGVRAARRARESRS 496 (699)
Q Consensus 417 ~~l~~S~~~~~lL~~vL~~GN~lN~gt~rg~A~GFkL~sL~KL~d~Ks~d~k~tLLh~lv~~i~~~~~~~~~~~~~e~~s 496 (699)
.+|.+.. +|+..|+...|...- +|=|-|++.++..+..+-.+.+
T Consensus 365 ~eLqk~~-----------------------------ad~~~KI~~~k~r~~--~Ls~RiLRv~ikqeilr~~G~~----- 408 (508)
T KOG3091|consen 365 TELQKHH-----------------------------ADAVAKIEEAKNRHV--ELSHRILRVMIKQEILRKRGYA----- 408 (508)
T ss_pred HHHHhhh-----------------------------hhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccCCc-----
Q ss_pred cccccchhhHhhhcCCccchHHHHhhhhhhhcchhhhHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhccccCCC
Q 005376 497 FSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGEN 576 (699)
Q Consensus 497 ~~~~~~~~ll~~~~~~~~~~e~~~~lgl~~v~~l~~eL~~V~kAa~vd~d~L~~~v~~L~~~l~~~~~~l~~~~~~~~~~ 576 (699)
++.+| ..|...|.++-+-.+-- .+|...|.+|-..++.....++. ....--|
T Consensus 409 ---L~~~E-----------------------E~Lr~Kldtll~~ln~P-nq~k~Rl~~L~e~~r~q~~~~~~-~~~~~iD 460 (508)
T KOG3091|consen 409 ---LTPDE-----------------------EELRAKLDTLLAQLNAP-NQLKARLDELYEILRMQNSQLKL-QESYWID 460 (508)
T ss_pred ---CCccH-----------------------HHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHhhcchhcc-ccceeec
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005376 577 SGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTG 612 (699)
Q Consensus 577 ~~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~ 612 (699)
++-..-|.+++..-++.+..|....+..++..+..+
T Consensus 461 ~~~~~e~~e~lt~~~e~l~~Lv~Ilk~d~edi~~~l 496 (508)
T KOG3091|consen 461 FDKLIEMKEHLTQEQEALTKLVNILKGDQEDIKHQL 496 (508)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
No 89
>PRK10869 recombination and repair protein; Provisional
Probab=32.37 E-value=3e+02 Score=32.28 Aligned_cols=29 Identities=10% Similarity=0.125 Sum_probs=17.0
Q ss_pred hcHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 005376 627 LFTIVRDFFIMLDKACKQVKDAPKKSTKS 655 (699)
Q Consensus 627 fF~iv~dFl~~l~ka~kEv~~~~kr~~k~ 655 (699)
+=.-+..-...+.+.++++.+.|++.++.
T Consensus 346 Le~e~~~l~~~l~~~A~~LS~~R~~aA~~ 374 (553)
T PRK10869 346 LALAVEKHHQQALETAQKLHQSRQRYAKE 374 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555556666667777777666543
No 90
>PRK10132 hypothetical protein; Provisional
Probab=31.96 E-value=1.4e+02 Score=27.24 Aligned_cols=43 Identities=2% Similarity=0.036 Sum_probs=28.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC
Q 005376 578 GFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAG 620 (699)
Q Consensus 578 ~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YFged~~ 620 (699)
...+++...++.++..+....+...++...+..+-+|-++++=
T Consensus 45 ~lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~Pw 87 (108)
T PRK10132 45 AARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERPW 87 (108)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCcH
Confidence 4566777888888877776655444455555566667777763
No 91
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=31.12 E-value=4.1e+02 Score=28.16 Aligned_cols=10 Identities=30% Similarity=0.474 Sum_probs=4.0
Q ss_pred ccHHHHHHHH
Q 005376 469 TTLLHFVVQE 478 (699)
Q Consensus 469 ~tLLh~lv~~ 478 (699)
+|+-..|.++
T Consensus 77 ~~i~e~ls~~ 86 (338)
T KOG3647|consen 77 TTICEMLSKE 86 (338)
T ss_pred hHHHHHHHHH
Confidence 3444444433
No 92
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=30.71 E-value=2e+02 Score=33.29 Aligned_cols=44 Identities=14% Similarity=0.262 Sum_probs=19.9
Q ss_pred ecChHHHhhHHHHHHhcC-CCHHHHHHHhhc--CCCCcHHHHHHHHh
Q 005376 305 IIDQKKAQNLSIMLRALN-VTLEEVCDALLE--GNELPAELIQTLLK 348 (699)
Q Consensus 305 iLd~kraqni~I~L~~l~-~s~~ei~~al~~--~~~L~~e~l~~Ll~ 348 (699)
|+..=...+.++.|.-.. ++..+.+.+|.. ......-.|...|+
T Consensus 309 vvNALl~g~~GL~L~p~ec~sW~~avaaL~~RthG~~plH~L~~vL~ 355 (582)
T PF03276_consen 309 VVNALLGGHLGLALTPNECGSWASAVAALYQRTHGSYPLHQLADVLR 355 (582)
T ss_pred HHHHHhcCCCccccCccccccHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 444444444555444432 355556666642 22344444444343
No 93
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=30.46 E-value=3.9e+02 Score=32.01 Aligned_cols=63 Identities=19% Similarity=0.111 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccCCCcchh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005376 547 SLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFH-------ETLKSFVQNAEGDIMWLLEEEKRIMSLVK 609 (699)
Q Consensus 547 ~L~~~v~~L~~~l~~~~~~l~~~~~~~~~~~~F~-------~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k 609 (699)
.....-++|.+.+..++..++..+..+++-..|- ..|...+..-...+..|...+.+-++.|+
T Consensus 58 ~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~ 127 (660)
T KOG4302|consen 58 EASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFK 127 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555544333322221111 15666666655555555555444333333
No 94
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=30.46 E-value=2.4e+02 Score=32.66 Aligned_cols=6 Identities=50% Similarity=0.761 Sum_probs=2.8
Q ss_pred HHHHhc
Q 005376 276 IETLFG 281 (699)
Q Consensus 276 lE~lF~ 281 (699)
||-.|-
T Consensus 294 IeGVfP 299 (582)
T PF03276_consen 294 IEGVFP 299 (582)
T ss_pred hccccc
Confidence 444453
No 95
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=30.43 E-value=5.9e+02 Score=26.13 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 005376 631 VRDFFIMLDKACKQVKDAPK 650 (699)
Q Consensus 631 v~dFl~~l~ka~kEv~~~~k 650 (699)
+..--..|+++|+|...++.
T Consensus 128 l~kskk~Y~~~~ke~~~a~~ 147 (251)
T cd07653 128 LEKSKKAYEKAFKEAEKAKQ 147 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555554443
No 96
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=30.40 E-value=5.9e+02 Score=26.28 Aligned_cols=8 Identities=25% Similarity=0.081 Sum_probs=3.7
Q ss_pred ccccCCCC
Q 005376 613 DYFHGNAG 620 (699)
Q Consensus 613 ~YFged~~ 620 (699)
-+||.|-.
T Consensus 252 g~fGMN~~ 259 (292)
T PF01544_consen 252 GIFGMNFK 259 (292)
T ss_dssp TSTTS-SS
T ss_pred HHhhCCcc
Confidence 45555544
No 97
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=30.26 E-value=78 Score=32.01 Aligned_cols=112 Identities=16% Similarity=0.188 Sum_probs=0.0
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHhhhhccc----cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 005376 542 AIDADSLTGTVSKLGHALLKTRDFLNTDMKN----LGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHG 617 (699)
Q Consensus 542 ~vd~d~L~~~v~~L~~~l~~~~~~l~~~~~~----~~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YFge 617 (699)
+-.++.+..++..|++.|.++...++..+.. ...+..|...|..|-..+..+. .+..-.++....+++++.|+ .
T Consensus 1 R~~l~~~E~~~~~l~~~l~kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~~~~d~-~i~~~l~kF~~~l~el~~~~-~ 78 (200)
T cd07603 1 RASLEQVEADVSELETRLEKLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDYFRDDS-LVQNCLNKFIQALQEMNNFH-T 78 (200)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcH-HHHHHHHHHHHHHHHHHHHH-H
Q ss_pred CCCccchhhhcHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 005376 618 NAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKSTKSLKK 658 (699)
Q Consensus 618 d~~k~e~~~fF~iv~dFl~~l~ka~kEv~~~~kr~~k~~kk 658 (699)
.--..--..+-.-+..|+ +.=.+++++.+|+-.|..++
T Consensus 79 ~L~~q~~~~i~~pL~~F~---k~dL~~vKE~kk~Fdk~s~~ 116 (200)
T cd07603 79 ILLDQAQRTVSTQLQNFV---KEDIKKVKESKKHFEKISDD 116 (200)
T ss_pred HHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHH
No 98
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=29.76 E-value=4.9e+02 Score=26.40 Aligned_cols=23 Identities=30% Similarity=0.186 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh
Q 005376 630 IVRDFFIMLDKACKQVKDAPKKS 652 (699)
Q Consensus 630 iv~dFl~~l~ka~kEv~~~~kr~ 652 (699)
-|.|=-..|+|+..+...+..|-
T Consensus 104 ~vKe~kK~FdK~s~~yd~al~K~ 126 (202)
T cd07606 104 EVKDARRRFDKASLDYEQARSKF 126 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777777776665544
No 99
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=29.58 E-value=5.7e+02 Score=25.89 Aligned_cols=121 Identities=13% Similarity=0.129 Sum_probs=0.0
Q ss_pred hcchhhhHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005376 527 VSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMS 606 (699)
Q Consensus 527 v~~l~~eL~~V~kAa~vd~d~L~~~v~~L~~~l~~~~~~l~~~~~~~~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~ 606 (699)
|..|...|..+.++ ++.|...=..|...+...-..+.. +...+.+......+..|-+..+.--..+......-..
T Consensus 13 i~~Le~~Lk~l~~~----~~~l~~~r~ela~~~~efa~~~~~-L~~~E~~~~l~~~l~~~a~~~~~~~~~~~~~a~~e~~ 87 (216)
T cd07627 13 LDSLESQLKQLYKS----LELVSSQRKELASATEEFAETLEA-LSSLELSKSLSDLLAALAEVQKRIKESLERQALQDVL 87 (216)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhcccccCCCCccchhhhcHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 005376 607 LVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKSTK 654 (699)
Q Consensus 607 ~~k~l~~YFged~~k~e~~~fF~iv~dFl~~l~ka~kEv~~~~kr~~k 654 (699)
.+..+++||....+ ....+|.--..=+..|..+.+++...+.+.+|
T Consensus 88 ~l~~~L~ey~r~~~--Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~K 133 (216)
T cd07627 88 TLGVTLDEYIRSIG--SVRAAFAQRQKLWQYWQSAESELSKKKAQLEK 133 (216)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 100
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=29.45 E-value=5.3e+02 Score=27.45 Aligned_cols=12 Identities=33% Similarity=0.312 Sum_probs=7.7
Q ss_pred cHHHHHHHHHHh
Q 005376 470 TLLHFVVQEIIR 481 (699)
Q Consensus 470 tLLh~lv~~i~~ 481 (699)
.||+.|+..++.
T Consensus 134 ~ll~~il~~ivd 145 (318)
T TIGR00383 134 YLLYDIFDAIID 145 (318)
T ss_pred HHHHHHHHHHHh
Confidence 467777766654
No 101
>PHA02562 46 endonuclease subunit; Provisional
Probab=29.39 E-value=6.5e+02 Score=29.11 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=12.9
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHhh
Q 005376 625 LRLFTIVRDFFIMLDKACKQVKDA 648 (699)
Q Consensus 625 ~~fF~iv~dFl~~l~ka~kEv~~~ 648 (699)
..-+..+.|-+..++.-.+++.++
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~ 321 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTA 321 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666555555555555444
No 102
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=29.15 E-value=1.2e+02 Score=34.27 Aligned_cols=98 Identities=11% Similarity=0.119 Sum_probs=32.5
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcc
Q 005376 543 IDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKD 622 (699)
Q Consensus 543 vd~d~L~~~v~~L~~~l~~~~~~l~~~~~~~~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YFged~~k~ 622 (699)
.++..+...+..+.-.|+++|+. ++..+-++..|..-....+.+.++++..+.+ ++.+++.++.+=.-....
T Consensus 260 ~~L~~m~~~i~~~kp~WkKiWE~---EL~~V~eEQqfL~~QedL~~DL~eDl~k~~e----tf~lveq~~~~Q~k~~~~- 331 (424)
T PF03915_consen 260 KELKKMKEYIKTEKPIWKKIWES---ELQKVCEEQQFLKLQEDLLSDLKEDLKKASE----TFALVEQCTEEQEKSPSR- 331 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCT---------
T ss_pred HHHHHHHHHHHHhCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHcccCCC-
Confidence 45666667777777777777643 2222222344555555555555555444433 233444444321111111
Q ss_pred chhhhc--HHH----HHHHHHHHHHHHHHHhh
Q 005376 623 EGLRLF--TIV----RDFFIMLDKACKQVKDA 648 (699)
Q Consensus 623 e~~~fF--~iv----~dFl~~l~ka~kEv~~~ 648 (699)
...+++ ..+ .++....+.++.||+..
T Consensus 332 ~~~r~~~~~~~~~pg~~~~~~~~~VL~EV~aL 363 (424)
T PF03915_consen 332 SRNRPVANLPIPEPGEDPHEARDQVLGEVRAL 363 (424)
T ss_dssp --------------------------------
T ss_pred CCCCCccCCCCCCCCCChhhHHHHHHHHHHhc
Confidence 112333 111 25566677888888743
No 103
>PF15449 Retinal: Retinal protein
Probab=28.78 E-value=1.2e+03 Score=29.63 Aligned_cols=6 Identities=33% Similarity=0.440 Sum_probs=2.2
Q ss_pred hHhhhh
Q 005376 29 LVALLK 34 (699)
Q Consensus 29 ~~~~~~ 34 (699)
.+.+|.
T Consensus 901 PiDLLP 906 (1287)
T PF15449_consen 901 PIDLLP 906 (1287)
T ss_pred cccccc
Confidence 333333
No 104
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=28.63 E-value=1.8e+02 Score=28.28 Aligned_cols=56 Identities=14% Similarity=0.162 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccCCCcchhh--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005376 549 TGTVSKLGHALLKTRDFLNTDMKNLGENSGFHE--TLKSFVQNAEGDIMWLLEEEKRIMSLV 608 (699)
Q Consensus 549 ~~~v~~L~~~l~~~~~~l~~~~~~~~~~~~F~~--~m~~Fl~~Ae~~i~~L~e~~~~~~~~~ 608 (699)
..+..+|.+++.++++++ ..+...|+|.. +++.=++.++++++++.++.......+
T Consensus 39 ~~~~~~l~~Ei~~l~~E~----~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~ 96 (161)
T PF04420_consen 39 SKEQRQLRKEILQLKREL----NAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSF 96 (161)
T ss_dssp HHHHHHHHHHHHHHHHHH----TTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred cHHHHHHHHHHHHHHHHH----HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666655543 33444567764 555666666666666665554433333
No 105
>PF06992 Phage_lambda_P: Replication protein P; InterPro: IPR009731 This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin [].; GO: 0006270 DNA-dependent DNA replication initiation
Probab=28.50 E-value=1.5e+02 Score=30.77 Aligned_cols=42 Identities=14% Similarity=0.012 Sum_probs=27.0
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhcccccC
Q 005376 576 NSGFHETLKSFVQNAEGDIMWLLE--EEKRIMSLVKSTGDYFHG 617 (699)
Q Consensus 576 ~~~F~~~m~~Fl~~Ae~~i~~L~e--~~~~~~~~~k~l~~YFge 617 (699)
++.|.-+...||.-|+..-..... ..+++.+.+++.+.|+|.
T Consensus 96 ~spF~PS~GqFI~WCk~~~~~~lGLP~~del~~~~~~y~~~rg~ 139 (233)
T PF06992_consen 96 ESPFWPSPGQFIAWCKPGDYEALGLPSVDELYQRYKRYCRYRGF 139 (233)
T ss_pred CCCCCCChhHHHHHHhcchHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 578999999999999864322211 134456666666666543
No 106
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=28.41 E-value=1.1e+03 Score=28.64 Aligned_cols=12 Identities=17% Similarity=-0.067 Sum_probs=8.4
Q ss_pred CCCCCCCCCCCC
Q 005376 98 AVGGTAKSFNEN 109 (699)
Q Consensus 98 ~~~~~~~~~~~~ 109 (699)
.+-|.+.+..|.
T Consensus 151 qv~WhP~s~~~~ 162 (717)
T PF10168_consen 151 QVRWHPWSESDS 162 (717)
T ss_pred EEEEcCCCCCCC
Confidence 678888766554
No 107
>TIGR00153 conserved hypothetical protein TIGR00153. An apparent homolog with a suggested function is Pit accessory protein from Sinorhizobium meliloti, which may be involved in phosphate (Pi) transport.
Probab=28.38 E-value=5.8e+02 Score=25.72 Aligned_cols=27 Identities=7% Similarity=0.211 Sum_probs=17.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 005376 544 DADSLTGTVSKLGHALLKTRDFLNTDM 570 (699)
Q Consensus 544 d~d~L~~~v~~L~~~l~~~~~~l~~~~ 570 (699)
+.+.....+..+++.-..++..+...+
T Consensus 44 ~~~~~~~~I~~lE~eaD~i~~~i~~~L 70 (216)
T TIGR00153 44 KDEELRKEIIEIEHEADEIKREIRLNL 70 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345566777777777777776665544
No 108
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=28.20 E-value=1.5e+02 Score=32.74 Aligned_cols=101 Identities=20% Similarity=0.316 Sum_probs=55.6
Q ss_pred CCCHHHHHHHhhcCCCCcHHHHHHHH-----hcCCCH---HHHHHHHhhccccccCChHHHHHHHHcCCcChHHHHHHHH
Q 005376 322 NVTLEEVCDALLEGNELPAELIQTLL-----KMAPTA---EEELKLRLFNGELSQLGPAERFLKALVDIPFSFKRLEALL 393 (699)
Q Consensus 322 ~~s~~ei~~al~~~~~L~~e~l~~Ll-----~~~Pt~---eE~~~l~~~~~d~~~L~~aE~Fl~~l~~Ip~~~~Rl~~l~ 393 (699)
+++.||+.+.|.+.|. +.+.|...+ .++|-. .|...+...-++...-+.-|+|+.-=.+|=.|..||+
T Consensus 7 ~~~LeeLe~kLa~~d~-~Kd~V~~~I~ea~~sILPlRL~FNeFi~tma~Ie~~~~~s~qeKFl~IR~KlleL~~~lQ--- 82 (379)
T PF11593_consen 7 NLKLEELEEKLASNDN-SKDSVMDKISEAQDSILPLRLQFNEFIQTMANIEEMNNKSPQEKFLLIRSKLLELYNKLQ--- 82 (379)
T ss_pred CCcHHHHHHHHhcCCc-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHH---
Confidence 5677888888875544 444333322 244421 1111111111334455778888654333333334433
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 005376 394 FMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEA 431 (699)
Q Consensus 394 f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~~~~lL~~ 431 (699)
+|-+.+..|.+.|++|.+-.+.. ++++|. .||.
T Consensus 83 ---~lS~df~~LqPLF~Ti~eyse~~-~~kkF~-pLEt 115 (379)
T PF11593_consen 83 ---ELSSDFQKLQPLFDTIPEYSEKY-NSKKFQ-PLET 115 (379)
T ss_pred ---HHHHHHHHhchHHhhhHHHhccc-CCccce-echh
Confidence 34567788888999888888777 677775 3344
No 109
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=28.08 E-value=4.2e+02 Score=24.84 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 005376 547 SLTGTVSKLGHALLKTRDFLN 567 (699)
Q Consensus 547 ~L~~~v~~L~~~l~~~~~~l~ 567 (699)
.+.+-+..+...|..+++.|.
T Consensus 47 ~v~kql~~vs~~l~~tKkhLs 67 (126)
T PF07889_consen 47 SVSKQLEQVSESLSSTKKHLS 67 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555543
No 110
>PRK09752 adhesin; Provisional
Probab=27.78 E-value=57 Score=41.06 Aligned_cols=6 Identities=0% Similarity=0.019 Sum_probs=2.9
Q ss_pred cccccc
Q 005376 259 MVWHQI 264 (699)
Q Consensus 259 TiW~~i 264 (699)
++|..+
T Consensus 986 s~W~R~ 991 (1250)
T PRK09752 986 TLNLRV 991 (1250)
T ss_pred ceEEEe
Confidence 455443
No 111
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=27.76 E-value=3.3e+02 Score=28.05 Aligned_cols=70 Identities=9% Similarity=0.069 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC-------ccc--hhhhc-HHHHHHHHHHHHHHHHHHhhhh
Q 005376 581 ETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAG-------KDE--GLRLF-TIVRDFFIMLDKACKQVKDAPK 650 (699)
Q Consensus 581 ~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YFged~~-------k~e--~~~fF-~iv~dFl~~l~ka~kEv~~~~k 650 (699)
+++..=+..++..+....++|......+..+-..|-.+.. ..+ -..|| ..++.|...+...|-.+.+.-+
T Consensus 156 eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~~~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~y~n~is~~cv~~d~~~e 235 (239)
T cd07647 156 EKLKKKAAQCKTSAEEADSAYKSSIGCLEDARVEWESEHATACQVFQNMEEERIKFLRNALWVHCNLGSMQCVKLDEMYE 235 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccchHHHH
Confidence 4556555566555555555555544443333222211111 111 23455 6677777777777777766544
No 112
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.70 E-value=3.3e+02 Score=28.03 Aligned_cols=65 Identities=14% Similarity=0.138 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccc-hhhhcHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005376 589 NAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDE-GLRLFTIVRDFFIMLDKACKQVKDAPKKST 653 (699)
Q Consensus 589 ~Ae~~i~~L~e~~~~~~~~~k~l~~YFged~~k~e-~~~fF~iv~dFl~~l~ka~kEv~~~~kr~~ 653 (699)
.-+.+++.|.++...+.+...+++.--..++...- -.+=+.|+.|.-..|.++|.-+...++++.
T Consensus 55 s~~~eie~LLeql~~vndsm~~~~~s~a~~aa~~htL~RHrEILqdy~qef~rir~n~~a~~e~~~ 120 (231)
T KOG3208|consen 55 SLENEIEGLLEQLQDVNDSMNDCASSPANSAAVMHTLQRHREILQDYTQEFRRIRSNIDAKRERES 120 (231)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777776663222222222222 257788999999999999999988888764
No 113
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=27.55 E-value=2e+02 Score=26.77 Aligned_cols=67 Identities=10% Similarity=0.139 Sum_probs=43.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC--ccchhhhcHHHHHHHHHHHHHHHHHHhh
Q 005376 578 GFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAG--KDEGLRLFTIVRDFFIMLDKACKQVKDA 648 (699)
Q Consensus 578 ~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YFged~~--k~e~~~fF~iv~dFl~~l~ka~kEv~~~ 648 (699)
.+...|..|++.-+.++..|......+......... +.. -..+..-|..++.|...|.+..+-+++.
T Consensus 15 ~l~~~L~~Yi~~~~~kl~~l~~~~~~~~~~~~~~~~----d~e~yl~nPlnaF~LIrRl~~dW~~~~~~~~~~ 83 (134)
T PF08336_consen 15 ELISNLRNYIEELQEKLDTLKRFLDEMKREHEKAKS----DPEEYLSNPLNAFSLIRRLHQDWPKWEKLMEQP 83 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----chhhhhhcHHHHHHHHHHHHHhhhhHHHHHHHh
Confidence 456677788888787777776665555555443322 111 1356788999999999888876655544
No 114
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.35 E-value=8.6e+02 Score=26.73 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=11.9
Q ss_pred cChHHHHHHHHHhhhhHHHHHHHHHH
Q 005376 383 PFSFKRLEALLFMCTLQEEVSATKES 408 (699)
Q Consensus 383 p~~~~Rl~~l~f~~~f~~~~~~l~~~ 408 (699)
+-+++-|+|.-.-...++.+-.+.+.
T Consensus 300 ~l~kq~l~~~A~d~aieD~i~~L~~~ 325 (365)
T KOG2391|consen 300 PLYKQILECYALDLAIEDAIYSLGKS 325 (365)
T ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 44455555544444444444444443
No 115
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.86 E-value=4.1e+02 Score=30.80 Aligned_cols=70 Identities=19% Similarity=0.202 Sum_probs=42.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC-----CCccchhhhcHHHHHHHHHHHHHHHHHHh
Q 005376 578 GFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGN-----AGKDEGLRLFTIVRDFFIMLDKACKQVKD 647 (699)
Q Consensus 578 ~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YFged-----~~k~e~~~fF~iv~dFl~~l~ka~kEv~~ 647 (699)
+|..-++.|.+....+.......++++.+...++..||..- ....+...|=.+-..++..+++..++...
T Consensus 219 gi~~Llekffem~~~~a~~al~iykr~~~q~e~L~~f~~~ck~~g~~r~~~iP~l~~i~~s~l~~lEe~l~~~~~ 293 (491)
T KOG0251|consen 219 GIINLLEKFFEMSKHDAIKALDIYKRFLSQTEKLSEFLKVCKSVGVDRGFEIPVLKRIPISLLEALEEHLRDVEG 293 (491)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcchhhcCHHHHHHHHHHHhhccc
Confidence 45555666666666677777777777777777776665421 11223333335666777777777776643
No 116
>PRK10404 hypothetical protein; Provisional
Probab=26.75 E-value=2.1e+02 Score=25.70 Aligned_cols=42 Identities=12% Similarity=0.162 Sum_probs=26.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcccccCCC
Q 005376 578 GFHETLKSFVQNAEGDIMWLLEEEK-RIMSLVKSTGDYFHGNA 619 (699)
Q Consensus 578 ~F~~~m~~Fl~~Ae~~i~~L~e~~~-~~~~~~k~l~~YFged~ 619 (699)
...+++...++.++.++..+.+... +.......+-+|-++++
T Consensus 38 ~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~P 80 (101)
T PRK10404 38 ELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKP 80 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCc
Confidence 4566777777777777766655432 24555555667777765
No 117
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=26.74 E-value=3.9e+02 Score=27.49 Aligned_cols=43 Identities=21% Similarity=0.218 Sum_probs=30.9
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 005376 573 LGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYF 615 (699)
Q Consensus 573 ~~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YF 615 (699)
..+.|.|++..+.||...+..+..+.....++...-++++.-|
T Consensus 18 ~ke~D~~Fe~~k~~l~~l~~~Lk~a~~~~~~lv~~rkela~~~ 60 (218)
T cd07663 18 VKEVDEFFEQEKTFLVNYYNRIKDSCAKADKMTRSHKNVADDY 60 (218)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445789999999999988888887777666666656555433
No 118
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=26.44 E-value=2.1e+02 Score=30.69 Aligned_cols=7 Identities=14% Similarity=0.382 Sum_probs=3.5
Q ss_pred CCccccc
Q 005376 256 DNSMVWH 262 (699)
Q Consensus 256 ~~~TiW~ 262 (699)
..++||.
T Consensus 86 ~~g~V~~ 92 (353)
T PLN00034 86 AGGTVYK 92 (353)
T ss_pred CCeEEEE
Confidence 3455554
No 119
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.26 E-value=7.2e+02 Score=30.37 Aligned_cols=177 Identities=14% Similarity=0.145 Sum_probs=0.0
Q ss_pred hHHHHHHHHcCCcChHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhhcHHHHH-----HHHHHHHhcccccCCCC
Q 005376 371 PAERFLKALVDIPFSFKRLEALLFMCT-LQEEVSATKESFEILEVACKELRNSRLFLK-----LLEAVLKTGNRMNDGTF 444 (699)
Q Consensus 371 ~aE~Fl~~l~~Ip~~~~Rl~~l~f~~~-f~~~~~~l~~~l~~l~~A~~~l~~S~~~~~-----lL~~vL~~GN~lN~gt~ 444 (699)
+-|..++.=.+...+..+|++|-|+.. +.+++.+++-.+.+...+++++...+.+.. +-.-|-.+-+.+-.-..
T Consensus 428 eqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~ 507 (1118)
T KOG1029|consen 428 EQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAP 507 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q ss_pred CcceeeeeccccccccccccCCCCccHHHHHHHHHHhhhhhhHHhhhhcccccccccchhhHhhhcCCccchHHHHhhhh
Q 005376 445 RGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGL 524 (699)
Q Consensus 445 rg~A~GFkL~sL~KL~d~Ks~d~k~tLLh~lv~~i~~~~~~~~~~~~~e~~s~~~~~~~~ll~~~~~~~~~~e~~~~lgl 524 (699)
..+..+=+| +.+=...|.++...+.||-....- +++
T Consensus 508 Ekq~l~~ql--kq~q~a~~~~~~~~s~L~aa~~~k------------------------e~i------------------ 543 (1118)
T KOG1029|consen 508 EKQELNHQL--KQKQSAHKETTQRKSELEAARRKK------------------------ELI------------------ 543 (1118)
T ss_pred HHHHHHHHH--HHhhhhccCcchHHHHHHHHHHHH------------------------HHH------------------
Q ss_pred hhhcchhhhHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005376 525 QAVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRI 604 (699)
Q Consensus 525 ~~v~~l~~eL~~V~kAa~vd~d~L~~~v~~L~~~l~~~~~~l~~~~~~~~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~~~~ 604 (699)
...+.+.|.+|.+ ..+.-..++..+...+.+.++.++. .+...-+.++.+...+.+.+.++
T Consensus 544 --rq~ikdqldelsk----E~esk~~eidi~n~qlkelk~~~~~-------------q~lake~~yk~e~d~~ke~et~~ 604 (1118)
T KOG1029|consen 544 --RQAIKDQLDELSK----ETESKLNEIDIFNNQLKELKEDVNS-------------QQLAKEELYKNERDKLKEAETKA 604 (1118)
T ss_pred --HHHHHHHHHHHHH----HHHHHHHhhhhHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHh
Q 005376 605 MSLVKS 610 (699)
Q Consensus 605 ~~~~k~ 610 (699)
.++..+
T Consensus 605 lel~~~ 610 (1118)
T KOG1029|consen 605 LELIGE 610 (1118)
T ss_pred HHHHhh
No 120
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.93 E-value=6e+02 Score=27.89 Aligned_cols=9 Identities=11% Similarity=0.136 Sum_probs=3.9
Q ss_pred CcCCCCCCC
Q 005376 94 ASFGAVGGT 102 (699)
Q Consensus 94 ~~~~~~~~~ 102 (699)
.|+.|.||+
T Consensus 101 ~hVd~nG~V 109 (365)
T KOG2391|consen 101 EHVDPNGKV 109 (365)
T ss_pred hccCCCCeE
Confidence 344444444
No 121
>PF08359 TetR_C_4: YsiA-like protein, C-terminal region; InterPro: IPR013570 The members of this family are thought to be TetR-type (tetracycline resistance) transcriptional regulators that bear particular similarity to YsiA (P94548 from SWISSPROT). This entry represents the C-terminal domain.; PDB: 1VI0_B.
Probab=25.87 E-value=93 Score=28.46 Aligned_cols=14 Identities=29% Similarity=0.563 Sum_probs=5.8
Q ss_pred hHHHHHHHHHHHHH
Q 005376 581 ETLKSFVQNAEGDI 594 (699)
Q Consensus 581 ~~m~~Fl~~Ae~~i 594 (699)
+.|..|++..++.+
T Consensus 3 ~~~~~~~~~i~~~~ 16 (133)
T PF08359_consen 3 EKMNRFLERIEEAI 16 (133)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 122
>COG2317 Zn-dependent carboxypeptidase [Amino acid transport and metabolism]
Probab=25.75 E-value=3.7e+02 Score=30.80 Aligned_cols=24 Identities=13% Similarity=0.106 Sum_probs=17.4
Q ss_pred chhhhcHHHHHHHHHHHHHHHHHH
Q 005376 623 EGLRLFTIVRDFFIMLDKACKQVK 646 (699)
Q Consensus 623 e~~~fF~iv~dFl~~l~ka~kEv~ 646 (699)
+..++|..+++.+..|-....+..
T Consensus 168 ~i~~vF~~Lk~~L~~ll~kv~~~~ 191 (497)
T COG2317 168 DVDRVFAELKKELVPLLDKVLEKG 191 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 458899999999887755555444
No 123
>PRK04654 sec-independent translocase; Provisional
Probab=25.41 E-value=3e+02 Score=28.09 Aligned_cols=16 Identities=13% Similarity=0.048 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHhh
Q 005376 552 VSKLGHALLKTRDFLN 567 (699)
Q Consensus 552 v~~L~~~l~~~~~~l~ 567 (699)
+.++++.+..+++.++
T Consensus 36 irk~R~~~~~vk~El~ 51 (214)
T PRK04654 36 VRRARMQWDSVKQELE 51 (214)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 124
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=25.32 E-value=6.4e+02 Score=29.10 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=17.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHH
Q 005376 577 SGFHETLKSFVQNAEGDIMWLLEEE 601 (699)
Q Consensus 577 ~~F~~~m~~Fl~~Ae~~i~~L~e~~ 601 (699)
.+|+..+.+|--+++..-+.+..+.
T Consensus 630 N~fc~~~~EFaLEYRTTRervLQQ~ 654 (817)
T KOG1925|consen 630 NQFCHTLREFALEYRTTRERVLQQQ 654 (817)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4799999999888776544444333
No 125
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=25.05 E-value=1.3e+02 Score=33.98 Aligned_cols=53 Identities=25% Similarity=0.155 Sum_probs=34.2
Q ss_pred hhcHHHHHHHHHHHHhcccccCCCCCcceeeee---cccccccccc----ccCCCCccHHHHHHH
Q 005376 420 RNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFK---LDTLLKLSDV----KGVDGKTTLLHFVVQ 477 (699)
Q Consensus 420 ~~S~~~~~lL~~vL~~GN~lN~gt~rg~A~GFk---L~sL~KL~d~----Ks~d~k~tLLh~lv~ 477 (699)
-.|..-.-+...+|++|||.-.. +.... =+.++||.++ |+.|+..++-|-...
T Consensus 324 ~~S~d~~l~t~g~LaigNfaR~D-----~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~ls 383 (604)
T KOG4500|consen 324 FRSDDSNLITMGSLAIGNFARRD-----DICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLS 383 (604)
T ss_pred hcCCchhHHHHHHHHHHhhhccc-----hHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHH
Confidence 34555555677899999997433 32222 2557777664 677888887776654
No 126
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.01 E-value=6.8e+02 Score=24.76 Aligned_cols=14 Identities=14% Similarity=0.304 Sum_probs=7.6
Q ss_pred chhhHHHHHHHHHH
Q 005376 578 GFHETLKSFVQNAE 591 (699)
Q Consensus 578 ~F~~~m~~Fl~~Ae 591 (699)
.|.+.|++++.-+.
T Consensus 87 ~f~~~Lkd~~~y~~ 100 (185)
T cd07628 87 NYLTSLKDLLHYIL 100 (185)
T ss_pred HHHHHHHHHHHHHH
Confidence 46666665554443
No 127
>PF04803 Cor1: Cor1/Xlr/Xmr conserved region; InterPro: IPR006888 Cor1 is a component of the chromosome core in the meiotic prophase chromosomes []. Xlr is a lymphoid cell specific protein []. Xmr is abundantly transcribed in testis in a tissue-specific and developmentally regulated manner. The protein is located in the nuclei of spermatocytes, early in the prophase of the first meiotic division, and later becomes concentrated in the XY nuclear subregion where it is in particular associated with the axes of sex chromosomes [].
Probab=24.91 E-value=4.7e+02 Score=24.67 Aligned_cols=73 Identities=10% Similarity=0.225 Sum_probs=40.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccchhhhcHHHHHHHHHHHHHHHHHHhhhhh
Q 005376 577 SGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKK 651 (699)
Q Consensus 577 ~~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YFged~~k~e~~~fF~iv~dFl~~l~ka~kEv~~~~kr 651 (699)
..|...+...+..-+.++..+.+.+.++...|.+--..|..... --..=+..|.+-...|-+.+.++++....
T Consensus 42 ~~ys~q~~~l~~qw~~D~qk~ke~eEkl~n~~~qqQK~~qq~r~--~q~Qrlk~iK~l~eqflK~le~le~~~~~ 114 (130)
T PF04803_consen 42 EEYSQQFSTLFQQWEADVQKFKEQEEKLSNIFQQQQKLFQQARI--VQNQRLKAIKELHEQFLKSLEDLEKSHDN 114 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666677777778888887777777777655444432211 01122334444455555555555554443
No 128
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=24.56 E-value=5.9e+02 Score=23.89 Aligned_cols=30 Identities=23% Similarity=0.053 Sum_probs=19.8
Q ss_pred hcHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 005376 627 LFTIVRDFFIMLDKACKQVKDAPKKSTKSL 656 (699)
Q Consensus 627 fF~iv~dFl~~l~ka~kEv~~~~kr~~k~~ 656 (699)
.|..+++-...++++..++...+.+-.+.+
T Consensus 92 ~~~~~~~~~k~~~~~~~~yd~~~~k~~~~~ 121 (194)
T cd07307 92 DLKEIKKRRKKLDKARLDYDAAREKLKKLR 121 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445667777777777777777766654443
No 129
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=24.28 E-value=6.7e+02 Score=24.38 Aligned_cols=27 Identities=19% Similarity=0.105 Sum_probs=16.7
Q ss_pred cchhhhc-HHHHHHHHHHHHHHHHHHhh
Q 005376 622 DEGLRLF-TIVRDFFIMLDKACKQVKDA 648 (699)
Q Consensus 622 ~e~~~fF-~iv~dFl~~l~ka~kEv~~~ 648 (699)
.+...+| .++.+|...+.+..++++.+
T Consensus 124 e~l~~~~K~~~D~~~k~~~~~~~~l~~a 151 (155)
T PF07464_consen 124 EKLQPAIKQAYDDAVKAAQKVQKQLHEA 151 (155)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666 45556666677777766654
No 130
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.11 E-value=6.7e+02 Score=29.33 Aligned_cols=60 Identities=17% Similarity=0.103 Sum_probs=30.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccchhhhcHHHHHHHHHHHHHHHHHH
Q 005376 579 FHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVK 646 (699)
Q Consensus 579 F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YFged~~k~e~~~fF~iv~dFl~~l~ka~kEv~ 646 (699)
-.+.|..|+++ +++++.+..+.++...+.++.-||-.-....- .=+||-..+..+-++++
T Consensus 613 ~i~e~a~~La~---R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~-----AErdFk~Elq~~~~~~~ 672 (741)
T KOG4460|consen 613 SLREMAERLAD---RYEEAKEKQEDLMNRMKKLLHSFHSELPVLSD-----AERDFKKELQLIPDQLR 672 (741)
T ss_pred HHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHhcccccCCcchh-----HHHHHHHHHHHhHHHHH
Confidence 34555555543 44444444555566666666667654332221 12556555555555544
No 131
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.96 E-value=6.9e+02 Score=24.46 Aligned_cols=69 Identities=16% Similarity=0.162 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccchhhhcHHHHHHHHHHHHHHHHHHhhhhhh
Q 005376 580 HETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKS 652 (699)
Q Consensus 580 ~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YFged~~k~e~~~fF~iv~dFl~~l~ka~kEv~~~~kr~ 652 (699)
.+.+..=|..++..+..+...+..+...++.-+..|+. ....+|-.++.+|+...-..++++-+.|...
T Consensus 147 i~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~----~~~~dlk~~l~~~~~~qi~~~~~~~~~W~~~ 215 (218)
T cd07596 147 VEELEEELEEAESALEEARKRYEEISERLKEELKRFHE----ERARDLKAALKEFARLQVQYAEKIAEAWESL 215 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556666677777777777777777777666666742 2234567788888888888888888877653
No 132
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=23.80 E-value=3.8e+02 Score=27.43 Aligned_cols=41 Identities=22% Similarity=0.337 Sum_probs=26.1
Q ss_pred cchhhhHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 005376 528 SHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMK 571 (699)
Q Consensus 528 ~~l~~eL~~V~kAa~vd~d~L~~~v~~L~~~l~~~~~~l~~~~~ 571 (699)
..|.+||..+++ -.+..|..+..+|..+|.+++..+..+++
T Consensus 104 ~kiRsel~S~e~---sEF~~lr~e~EklkndlEk~ks~lr~ei~ 144 (220)
T KOG3156|consen 104 AKIRSELVSIER---SEFANLRAENEKLKNDLEKLKSSLRHEIS 144 (220)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556555554 34566777777888888777776655443
No 133
>PRK04863 mukB cell division protein MukB; Provisional
Probab=23.48 E-value=6.5e+02 Score=33.41 Aligned_cols=34 Identities=6% Similarity=0.117 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHh
Q 005376 402 VSATKESFEILEVACKELRNSRLFLKLLEAVLKT 435 (699)
Q Consensus 402 ~~~l~~~l~~l~~A~~~l~~S~~~~~lL~~vL~~ 435 (699)
+++++..|..+....+.|+.+..+..+++-++..
T Consensus 232 i~~m~~~l~~~r~t~~~~~~tq~drdlFk~lI~~ 265 (1486)
T PRK04863 232 FQDMEAALRENRMTLEAIRVTQSDRDLFKHLITE 265 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccHHHHHHHHhhh
Confidence 7788899999999999999999999998887544
No 134
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=23.42 E-value=5.9e+02 Score=24.95 Aligned_cols=27 Identities=11% Similarity=0.176 Sum_probs=12.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005376 579 FHETLKSFVQNAEGDIMWLLEEEKRIM 605 (699)
Q Consensus 579 F~~~m~~Fl~~Ae~~i~~L~e~~~~~~ 605 (699)
+.+.....+...+..+..+.++..++.
T Consensus 124 ~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 124 LLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444
No 135
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=23.30 E-value=6.6e+02 Score=28.26 Aligned_cols=30 Identities=10% Similarity=0.337 Sum_probs=16.6
Q ss_pred hhhHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 005376 579 FHETLKSFVQNA---EGDIMWLLEEEKRIMSLV 608 (699)
Q Consensus 579 F~~~m~~Fl~~A---e~~i~~L~e~~~~~~~~~ 608 (699)
+...|..|..++ +.++++|.++...+.+++
T Consensus 225 ~k~~Lt~l~~rvqkvRDeLe~LLddd~Dma~mY 257 (414)
T KOG2662|consen 225 LKKRLTELTSRVQKVRDELEELLDDDDDMAEMY 257 (414)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 344566665554 346666666555555554
No 136
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.14 E-value=8.1e+02 Score=24.96 Aligned_cols=58 Identities=16% Similarity=0.153 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccchhhhcHHHHHHHHHHHHHHHHHHh
Q 005376 586 FVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKD 647 (699)
Q Consensus 586 Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YFged~~k~e~~~fF~iv~dFl~~l~ka~kEv~~ 647 (699)
-|..|+.++.....++.++.....+.+..|...- ...|=.+|.+|+..--....+.-+
T Consensus 136 ~i~eaE~~l~~a~~d~~r~s~~l~ee~~rFe~~k----~~d~K~~l~~fv~~~m~~~~kale 193 (211)
T cd07598 136 IISQAESELQKASVDANRSTKELEEQMDNFEKQK----IRDIKTIFSDFVLIEMLFHAKALE 193 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457888888888888888888888877773322 233334666666555444444433
No 137
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=23.04 E-value=1.2e+03 Score=29.53 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 005376 386 FKRLEALLFMCTLQEEVSATKESFEILEVACKE 418 (699)
Q Consensus 386 ~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~~ 418 (699)
..||+++.-..+|..++.+|.+.|+.+..-++.
T Consensus 664 rsrLe~~k~~~~~~~~~~~l~~~L~~~r~~i~~ 696 (1200)
T KOG0964|consen 664 RSRLELLKNVNESRSELKELQESLDEVRNEIED 696 (1200)
T ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888877777765554443
No 138
>PF03978 Borrelia_REV: Borrelia burgdorferi REV protein; InterPro: IPR007126 This family consists of several REV proteins from Borrelia burgdorferi (Lyme disease spirochete) and Borrelia garinii. The function of REV is unknown although it has been shown that the gene is induced during the ingesting of host blood suggesting a role in the metabolic activation of borreliae to adapt to physiological stimuli [].
Probab=22.92 E-value=6.3e+02 Score=24.56 Aligned_cols=48 Identities=19% Similarity=0.275 Sum_probs=23.9
Q ss_pred chhhHHHHHH---HHHHHHHHHHHHHHH-----HHHHHHHhh--cccccCCCCccchh
Q 005376 578 GFHETLKSFV---QNAEGDIMWLLEEEK-----RIMSLVKST--GDYFHGNAGKDEGL 625 (699)
Q Consensus 578 ~F~~~m~~Fl---~~Ae~~i~~L~e~~~-----~~~~~~k~l--~~YFged~~k~e~~ 625 (699)
.|.++|..-+ ..|+.++..+.+.-. ++.+..+.+ .-+|+++.....+.
T Consensus 81 lfq~Kl~aKL~aLKAak~~i~~~~d~d~~~~k~~Iw~eak~~Gv~vk~~~s~~t~~g~ 138 (160)
T PF03978_consen 81 LFQDKLEAKLAALKAAKQKIEGIQDKDQECAKAKIWTEAKLVGVTVKFSGSNTTGKGD 138 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHhcCeeeeecccccCccHH
Confidence 3555555333 345555555543322 244444443 35788877655544
No 139
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=22.68 E-value=1.1e+02 Score=31.28 Aligned_cols=116 Identities=16% Similarity=0.054 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccc----cCCCcchhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcccccC--
Q 005376 545 ADSLTGTVSKLGHALLKTRDFLNTDMKN----LGENSGFHETLKSFVQNAEGDIMW-LLEEEKRIMSLVKSTGDYFHG-- 617 (699)
Q Consensus 545 ~d~L~~~v~~L~~~l~~~~~~l~~~~~~----~~~~~~F~~~m~~Fl~~Ae~~i~~-L~e~~~~~~~~~k~l~~YFge-- 617 (699)
...|...+..++..|.++...+...+.. ...+..|.+.+..|-..+..+-.. +..-..+.....+++..|+..
T Consensus 4 v~~lee~l~~~~~~l~Kl~K~~k~~~~~g~~~~~~~~~F~~aL~~~g~~~~~~~~~~i~~~l~kF~~~l~El~~~~~~L~ 83 (215)
T cd07604 4 VGALEESLEGDRVGLQKLKKAVKAIHNSGLAHVENELQFAEALEKLGSKALSREEEDLGAAFLKFSVFTKELAALFKNLM 83 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----CCCccchhhhcHH-HHHHH----HHHHHHHHHHHhhhhhhhhhhhhcc
Q 005376 618 ----NAGKDEGLRLFTI-VRDFF----IMLDKACKQVKDAPKKSTKSLKKEG 660 (699)
Q Consensus 618 ----d~~k~e~~~fF~i-v~dFl----~~l~ka~kEv~~~~kr~~k~~kke~ 660 (699)
+.-......|-.. |+++. ..|+|+.++...+..+.++.+++++
T Consensus 84 ~~~~~~i~~pL~~f~k~dL~~~k~e~KK~fdK~s~~ye~~~~k~~k~Kk~~~ 135 (215)
T cd07604 84 QNLNNIIMFPLDSLLKGDLKGSKGDLKKPFDKAWKDYETKASKIEKEKKQLA 135 (215)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
No 140
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=22.66 E-value=1.1e+03 Score=28.79 Aligned_cols=129 Identities=23% Similarity=0.335 Sum_probs=0.0
Q ss_pred ccCCC---CCcccccccCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 005376 74 SVGSG---NSKEEKLDIGKFDGTASFGAVGGTAKSFNENGQVLPPLKPPPGRVGSTLQGMPPLKPPPGRAEPLPHEPPAS 150 (699)
Q Consensus 74 s~~~~---~~k~~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~~ppp~~~~~~~~~~pp~~ppp~~~~p~pp~pp~~ 150 (699)
|+|.| ++|.++.....+++--+--+....+-... |.++.-..-....|...-.|-|...+...-...|++
T Consensus 918 svg~GlP~~Skps~k~p~~~tg~s~g~~~~~~~~r~~-------~~~~~~~~~~~~~paA~~~p~p~~~~~~~~~~~~~p 990 (1106)
T KOG0162|consen 918 SVGTGLPPNSKPSRKKPRKATGYSSGRDAASTPTRRA-------PQNKQAYGQNGVSPAAKGSPLPAQKPVNTYNQRPPP 990 (1106)
T ss_pred EecCCCCCCCCcCCcCcccCCCCCCCcccccCCCCCC-------CCCcccccCCCCCccccCCCCCCCCCCCccccCCCC
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 005376 151 LRPHPPSGPPPPPPPPPAPRPPPAPAPAPRAPPPPPKPGPPPPPPPRGGPAPRPPPPMP 209 (699)
Q Consensus 151 ~~p~ppp~ppppppppp~ppppp~p~p~~~~ppppp~p~ppppppp~~~~~p~pppp~p 209 (699)
........--+..-|++-|..----+....+..-..+..+.-+||+.+.|+|+||.-++
T Consensus 991 ~~~s~~~s~~~~~~p~s~p~~~~~~~~~~~~~~~~~~s~~q~~pP~~g~P~PpPp~~~~ 1049 (1106)
T KOG0162|consen 991 VSTSTTTSQQPSARPSSKPTVFTKVPDAGASGNGRKPSGPQRPPPPAGRPKPPPPAKPP 1049 (1106)
T ss_pred CCcccccccccccCCCCCCccccccCcccCcccccCCCCCCCCCCCCCCCCccCCCCCC
No 141
>KOG3821 consensus Heparin sulfate cell surface proteoglycan [Signal transduction mechanisms]
Probab=22.45 E-value=8.2e+02 Score=28.62 Aligned_cols=42 Identities=19% Similarity=0.330 Sum_probs=22.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhhcccccCCC
Q 005376 578 GFHETLKSFVQNAEGDIMWLLEE---------EKRIMSLVKSTGDYFHGNA 619 (699)
Q Consensus 578 ~F~~~m~~Fl~~Ae~~i~~L~e~---------~~~~~~~~k~l~~YFged~ 619 (699)
.|.+.+..-++.|+..+..+... ..-+.++|.++..|+.+-.
T Consensus 106 ~F~E~f~ell~~ae~~l~~mF~~tYg~ly~qn~~~~~dlFtel~~y~~~~~ 156 (563)
T KOG3821|consen 106 KFDEFFLELLRNAENSLNAMFSKTYGSLYPQNAELFNDLFTELKLYYVGSN 156 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcccc
Confidence 35555666666666655544311 1224456677776665544
No 142
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=22.01 E-value=5.1e+02 Score=26.77 Aligned_cols=20 Identities=5% Similarity=0.110 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 005376 629 TIVRDFFIMLDKACKQVKDA 648 (699)
Q Consensus 629 ~iv~dFl~~l~ka~kEv~~~ 648 (699)
..|+++|..|...+.|....
T Consensus 204 ~~lk~~L~~y~~~~~~~~~~ 223 (233)
T cd07649 204 EMIRQHLCQYTQLRHETDMF 223 (233)
T ss_pred HHHHHHHHHHHHHHHhccHH
Confidence 45677777777777765443
No 143
>PF09903 DUF2130: Uncharacterized protein conserved in bacteria (DUF2130); InterPro: IPR019219 This entry, found in various hypothetical bacterial proteins, has no known function.
Probab=21.99 E-value=2.5e+02 Score=29.74 Aligned_cols=74 Identities=18% Similarity=0.097 Sum_probs=40.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccchhhhcHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005376 578 GFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKST 653 (699)
Q Consensus 578 ~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YFged~~k~e~~~fF~iv~dFl~~l~ka~kEv~~~~kr~~ 653 (699)
.|+-.|..+|..+--++..+........+....+..| ++.-+.-...|+.-+.+....|.++.+++.+++++.+
T Consensus 156 ~~fi~l~~~LR~~~i~~~~~k~~~~~~~~k~~~l~~f--e~~~~~~~~~~~~~~~~~~~~l~ke~~~i~k~~~k~e 229 (267)
T PF09903_consen 156 QFFIPLITLLRNAAIKSAKYKKEQENKKEKMEDLYNF--EEEFRQFIEAIVENFEDMSKDLDKEIKAIDKAWKKRE 229 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777766666665555555555555555 3222222334444444455555555555555555443
No 144
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=21.68 E-value=2.7e+02 Score=30.82 Aligned_cols=38 Identities=13% Similarity=0.193 Sum_probs=22.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 005376 577 SGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYF 615 (699)
Q Consensus 577 ~~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YF 615 (699)
++|. .++.-|-+-..+|..|..++.++.=+|..+-+|-
T Consensus 65 eKFl-~IR~KlleL~~~lQ~lS~df~~LqPLF~Ti~eys 102 (379)
T PF11593_consen 65 EKFL-LIRSKLLELYNKLQELSSDFQKLQPLFDTIPEYS 102 (379)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHhchHHhhhHHHh
Confidence 3444 2333334445566777777777777776666654
No 145
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.47 E-value=5.3e+02 Score=29.41 Aligned_cols=7 Identities=0% Similarity=-0.420 Sum_probs=2.9
Q ss_pred CCCCCCC
Q 005376 101 GTAKSFN 107 (699)
Q Consensus 101 ~~~~~~~ 107 (699)
.+.+.||
T Consensus 377 r~~~~gf 383 (483)
T KOG2236|consen 377 RDQNRGF 383 (483)
T ss_pred cccccCC
Confidence 3344444
No 146
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=21.44 E-value=9.5e+02 Score=26.10 Aligned_cols=21 Identities=5% Similarity=0.243 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 005376 398 LQEEVSATKESFEILEVACKE 418 (699)
Q Consensus 398 f~~~~~~l~~~l~~l~~A~~~ 418 (699)
+++.+.+++..++....++..
T Consensus 24 LdDdF~eme~~vdvt~~~v~~ 44 (366)
T KOG1118|consen 24 LDDDFLEMEKEVDVTSKGVTK 44 (366)
T ss_pred CChHHHHHHHhHHHHHHHHHH
Confidence 344444444444444444433
No 147
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=21.11 E-value=4.5e+02 Score=21.23 Aligned_cols=28 Identities=14% Similarity=0.082 Sum_probs=17.9
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 005376 576 NSGFHETLKSFVQNAEGDIMWLLEEEKR 603 (699)
Q Consensus 576 ~~~F~~~m~~Fl~~Ae~~i~~L~e~~~~ 603 (699)
.+.|...+..|......-+..|.+..+.
T Consensus 46 ~~af~~~~~~~~~~~~~~~~~L~~~~~~ 73 (86)
T PF06013_consen 46 ADAFQDKFEEWNQAFRQLNEALEELSQA 73 (86)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888877766655555544433
No 148
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.06 E-value=1.1e+03 Score=25.55 Aligned_cols=32 Identities=13% Similarity=0.151 Sum_probs=16.1
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005376 574 GENSGFHETLKSFVQNAEGDIMWLLEEEKRIM 605 (699)
Q Consensus 574 ~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~ 605 (699)
..+.+-...|..-+.+....-..++...+.+.
T Consensus 71 ~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e 102 (297)
T KOG0810|consen 71 NADKELKRKLESLVDEIRRRARKIKTKLKALE 102 (297)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666555555554444444443333
No 149
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=21.04 E-value=7.5e+02 Score=29.98 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=17.1
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005376 543 IDADSLTGTVSKLGHALLKTRDFLNTD 569 (699)
Q Consensus 543 vd~d~L~~~v~~L~~~l~~~~~~l~~~ 569 (699)
.+.+.+...+.++..++.+.++.|..-
T Consensus 29 ~~~~a~~~~~~qi~~Wi~k~k~~l~~L 55 (683)
T PF08580_consen 29 NAVKALSGAAEQILDWIQKAKDVLYGL 55 (683)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566667777777777776543
No 150
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=21.01 E-value=8.1e+02 Score=26.61 Aligned_cols=12 Identities=25% Similarity=0.205 Sum_probs=6.0
Q ss_pred cHHHHHHHHHHh
Q 005376 470 TLLHFVVQEIIR 481 (699)
Q Consensus 470 tLLh~lv~~i~~ 481 (699)
.+|+.|.+.++.
T Consensus 131 ~vl~~Lld~iVd 142 (316)
T PRK11085 131 ELLLDLFETKIE 142 (316)
T ss_pred HHHHHHHHHHHH
Confidence 455555555543
No 151
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=20.99 E-value=1.1e+03 Score=27.28 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHhhhhcc
Q 005376 552 VSKLGHALLKTRDFLNTDMK 571 (699)
Q Consensus 552 v~~L~~~l~~~~~~l~~~~~ 571 (699)
+.++...|.++..+++.+.+
T Consensus 114 ~~k~g~~L~~v~~~~~~~~~ 133 (508)
T PF00901_consen 114 IEKFGNDLEKVYKFMKGQEK 133 (508)
T ss_pred HHHHHHHHHHHHHHHHHhHh
Confidence 46677777777777655443
No 152
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=20.83 E-value=1.2e+03 Score=26.35 Aligned_cols=22 Identities=36% Similarity=0.357 Sum_probs=14.8
Q ss_pred HHHHHHHHhhhhhhhhhhhhcc
Q 005376 639 DKACKQVKDAPKKSTKSLKKEG 660 (699)
Q Consensus 639 ~ka~kEv~~~~kr~~k~~kke~ 660 (699)
..|.|++..+++..+|.+||+.
T Consensus 357 qnaekql~~Ake~~eklkKKrs 378 (575)
T KOG4403|consen 357 QNAEKQLKEAKEMAEKLKKKRS 378 (575)
T ss_pred hhHHHHHHHHHHHHHHHHHhhc
Confidence 4567777777777766666653
No 153
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=20.47 E-value=1.5e+03 Score=28.03 Aligned_cols=43 Identities=26% Similarity=0.315 Sum_probs=25.0
Q ss_pred hHHHHHHHHcCCcChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 005376 371 PAERFLKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNS 422 (699)
Q Consensus 371 ~aE~Fl~~l~~Ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S 422 (699)
+.|.|+. +.|+++..++. |++.+..+...+..+..++..+-++
T Consensus 8 ~~~e~lk---dsp~fr~~~~~------~ee~~~~~~~~l~k~~~~~~~~~~~ 50 (785)
T KOG0521|consen 8 DAEEFLK---DSPQFRSTLDV------FEEDAGTLEKYLNKLLKAMTRKYDA 50 (785)
T ss_pred chHHHhh---cChhHHHHHHH------HHHHHHhhhhhHHHHHHHHHhhhcc
Confidence 3444543 66666665554 5566666666666666666655443
No 154
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=20.46 E-value=3.4e+02 Score=22.11 Aligned_cols=57 Identities=21% Similarity=0.240 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhhhhccccCCCcchhhHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 005376 551 TVSKLGHALLKTRDFLNTDMKNLGENSGFHETLK-SFVQNAEGDIMWLLEEEKRIMSLV 608 (699)
Q Consensus 551 ~v~~L~~~l~~~~~~l~~~~~~~~~~~~F~~~m~-~Fl~~Ae~~i~~L~e~~~~~~~~~ 608 (699)
++.+|.+.+.+++..+...-+.+ .+.+|..+.- .-++.-+.++..+.....++.+..
T Consensus 5 E~~rL~Kel~kl~~~i~~~~~kL-~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l 62 (66)
T PF10458_consen 5 EIERLEKELEKLEKEIERLEKKL-SNENFVEKAPEEVVEKEREKLEELEEELEKLEEAL 62 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-CSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-cCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555554444443322222 1345554332 222333444455555444444443
No 155
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.22 E-value=9e+02 Score=24.41 Aligned_cols=118 Identities=9% Similarity=0.057 Sum_probs=62.1
Q ss_pred chhhhHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005376 529 HLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLV 608 (699)
Q Consensus 529 ~l~~eL~~V~kAa~vd~d~L~~~v~~L~~~l~~~~~~l~~~~~~~~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~ 608 (699)
.|..-|..+..-+ ++-..+.+.+.+....|..++.....-+... +.-..+.|..|++.=-..+..+...+.++.+.+
T Consensus 41 ~F~~~l~d~~~~~-~gd~~i~~~L~kF~~~l~ei~~~~~~l~~q~--e~~l~~pL~~F~k~dL~~~KE~rK~Fdk~se~y 117 (200)
T cd07637 41 LFVSGIRDLSQQC-KKDEMISECLDKFGDSLQEMVNYHMILFDQA--QRSVRQQLHSFVKEDVRKFKETKKQFDKVREDL 117 (200)
T ss_pred HHHHHHHHHHHHc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3444444444432 3334567777888888877776543222221 334667788888766556666666666666666
Q ss_pred HhhcccccCCCCc-c-----chhhhcHHHHHHHHHHHHHHHHHHhhh
Q 005376 609 KSTGDYFHGNAGK-D-----EGLRLFTIVRDFFIMLDKACKQVKDAP 649 (699)
Q Consensus 609 k~l~~YFged~~k-~-----e~~~fF~iv~dFl~~l~ka~kEv~~~~ 649 (699)
...+.-+.--..+ . ....++..-+.|...--.-|-.+.+.+
T Consensus 118 d~al~k~~~~k~kk~~~l~Ea~~~L~~~Rk~f~~asLdyv~~ln~iq 164 (200)
T cd07637 118 EIALVKNAQAPRHKPHEVEEATSTLTITRKCFRHLALDYVLQINVLQ 164 (200)
T ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444332221122 1 124556666666644444444444443
No 156
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.22 E-value=8.1e+02 Score=24.85 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh
Q 005376 631 VRDFFIMLDKACKQVKDAPKKS 652 (699)
Q Consensus 631 v~dFl~~l~ka~kEv~~~~kr~ 652 (699)
|+|=-..|+|+..+...+..|-
T Consensus 103 vKe~kK~FdK~s~~~d~al~K~ 124 (200)
T cd07639 103 FRDARKEFERGAESLEAALQHN 124 (200)
T ss_pred HHHHhhhHhhcchhHHHHHHHH
Confidence 4455555556555555554444
No 157
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=20.13 E-value=6.1e+02 Score=26.08 Aligned_cols=40 Identities=15% Similarity=0.143 Sum_probs=29.2
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005376 573 LGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTG 612 (699)
Q Consensus 573 ~~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~ 612 (699)
..+.|.|++.-+.|+...+..+..+.....++...-++++
T Consensus 19 ~~d~D~~Fe~~k~~l~~l~~~Lk~~~~~~~~lv~~rkela 58 (219)
T cd07621 19 QKDVDEFFEQEKNFLVEYHNRIKDATAKADKMTRKHKDVA 58 (219)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999988888887776666655545444
No 158
>PF08807 DUF1798: Bacterial domain of unknown function (DUF1798); InterPro: IPR014913 This family contains many hypothetical proteins. The structure of one of them has been solved and it adopts an all alpha helical fold. ; PDB: 2HUJ_A 2ETS_A 2HFI_A 2IM8_B.
Probab=20.03 E-value=3.7e+02 Score=24.61 Aligned_cols=29 Identities=21% Similarity=0.230 Sum_probs=20.0
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 005376 574 GENSGFHETLKSFVQNAEGDIMWLLEEEK 602 (699)
Q Consensus 574 ~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~~ 602 (699)
+.+-+|++.|+.|++.....+..+.+...
T Consensus 23 ~~e~DF~~~VKPf~d~vd~~l~~w~~~a~ 51 (111)
T PF08807_consen 23 GKEYDFYEEVKPFADEVDQLLEEWKEYAL 51 (111)
T ss_dssp T----TTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChhhhccchhHHHHHHHHHHHHHHH
Confidence 44567999999999998888777665543
Done!