Query 005376
Match_columns 699
No_of_seqs 464 out of 1708
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 23:36:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005376.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005376hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j1d_G DAAM1, disheveled-assoc 100.0 7.6E-71 2.6E-75 619.6 39.9 375 234-650 6-400 (483)
2 3obv_E Protein diaphanous homo 100.0 3.8E-71 1.3E-75 615.7 36.9 378 235-653 2-391 (457)
3 4eah_A Formin-like protein 3, 100.0 2.6E-70 8.9E-75 600.9 32.7 374 234-658 10-393 (402)
4 1ux5_A BNI1 protein; structura 100.0 2.4E-66 8.2E-71 573.4 26.8 366 237-651 3-404 (411)
5 1v9d_A Diaphanous protein homo 100.0 7.3E-65 2.5E-69 548.0 30.2 316 298-654 4-321 (340)
6 1cee_B Wiskott-aldrich syndrom 97.2 0.00011 3.8E-09 58.0 1.6 31 79-109 1-31 (59)
7 2qme_I CRIB domain of the seri 93.1 0.012 4.2E-07 41.5 -0.7 22 86-107 1-22 (36)
8 2lnh_A N-WAsp, neural wiskott- 92.5 0.033 1.1E-06 44.6 0.9 20 91-110 2-21 (65)
9 2odb_B Serine/threonine-protei 90.9 0.018 6E-07 40.4 -2.0 22 86-107 1-22 (35)
10 1ej5_A WAsp, wiskott-aldrich s 89.9 0.12 4.2E-06 45.4 2.1 13 686-698 92-104 (107)
11 1f3m_A Serine/threonine-protei 89.9 0.038 1.3E-06 46.2 -1.1 25 83-107 2-26 (80)
12 2ov2_I Serine/threonine-protei 89.6 0.029 1E-06 39.3 -1.8 21 86-106 1-21 (35)
13 2q12_A DIP13 alpha, DCC-intera 73.0 78 0.0027 31.5 18.6 57 379-441 13-74 (265)
14 3okq_A BUD site selection prot 52.2 30 0.001 31.5 6.6 55 542-599 67-121 (141)
15 3fx7_A Putative uncharacterize 50.2 26 0.00088 29.9 5.4 31 578-608 56-86 (94)
16 2p22_C Protein SRN2; endosome, 42.6 2.3E+02 0.008 27.1 11.8 26 630-655 159-184 (192)
17 1vcs_A Vesicle transport throu 41.3 1.4E+02 0.0049 25.4 9.1 63 541-605 29-94 (102)
18 1zww_A SH3-containing GRB2-lik 40.3 1.4E+02 0.0048 29.6 10.3 25 396-420 27-51 (256)
19 3onj_A T-snare VTI1; helix, HA 39.8 1.7E+02 0.0058 24.7 9.2 66 541-606 25-94 (97)
20 1v9d_A Diaphanous protein homo 38.7 39 0.0013 35.4 6.1 31 578-608 252-282 (340)
21 4fie_A Serine/threonine-protei 37.0 6.9 0.00024 42.6 -0.1 27 81-107 2-28 (423)
22 3rh3_A Uncharacterized DUF3829 35.8 3E+02 0.01 27.6 11.5 116 532-649 90-240 (264)
23 2q13_A DCC-interacting protein 33.4 4.3E+02 0.015 27.5 18.2 54 379-438 13-71 (385)
24 2efk_A CDC42-interacting prote 33.2 1.3E+02 0.0046 30.0 9.0 92 528-619 101-207 (301)
25 3kpe_A Fusion glycoprotein F0; 32.6 61 0.0021 24.4 4.4 43 398-442 2-44 (51)
26 3ghg_A Fibrinogen alpha chain; 32.2 1.8E+02 0.0063 32.1 9.9 65 544-615 103-169 (562)
27 2h8h_A Proto-oncogene tyrosine 31.9 9.8 0.00033 42.3 0.0 7 274-280 158-164 (535)
28 3uul_A Utrophin; spectrin repe 31.4 2.3E+02 0.0078 23.6 12.6 105 543-653 2-109 (118)
29 3okq_A BUD site selection prot 31.1 3E+02 0.01 25.0 10.4 62 575-638 51-112 (141)
30 3obv_E Protein diaphanous homo 31.0 64 0.0022 35.3 6.4 61 578-642 323-384 (457)
31 2hfi_A Hypothetical protein YP 30.7 3E+02 0.01 24.7 10.4 52 550-602 8-59 (131)
32 2qyw_A Vesicle transport throu 29.4 2E+02 0.0069 24.5 8.0 54 546-601 45-101 (102)
33 4hpq_C ATG17, KLTH0D15642P; au 28.1 2.7E+02 0.0092 29.9 10.5 45 381-428 129-173 (413)
34 2j1d_G DAAM1, disheveled-assoc 27.3 2.3E+02 0.0078 31.0 10.1 59 578-640 335-394 (483)
35 2d1l_A Metastasis suppressor p 26.3 4.4E+02 0.015 26.3 11.1 32 630-661 125-156 (253)
36 3uun_A Dystrophin; triple heli 25.7 2.9E+02 0.0098 22.9 12.3 104 544-653 3-109 (119)
37 1avo_B 11S regulator; proteaso 25.1 3.9E+02 0.013 24.2 13.0 38 547-584 14-51 (140)
38 2ets_A Hypothetical protein; s 24.8 3.7E+02 0.013 24.0 10.7 44 548-599 20-63 (128)
39 1ez3_A Syntaxin-1A; three heli 24.8 3.3E+02 0.011 23.4 10.9 33 576-608 45-77 (127)
40 1s94_A S-syntaxin; three helix 24.6 2.5E+02 0.0084 26.1 8.5 33 576-608 76-108 (180)
41 3qwe_A GMIP, GEM-interacting p 22.9 2.5E+02 0.0084 28.6 8.5 29 626-654 98-126 (279)
42 4ioe_A Secreted protein ESXB; 22.7 2.8E+02 0.0097 22.1 7.7 54 591-648 22-75 (93)
43 2iub_A CORA, divalent cation t 22.5 4.4E+02 0.015 27.3 10.9 10 471-480 181-190 (363)
44 2l5g_B Putative uncharacterize 22.0 86 0.003 22.5 3.4 26 633-658 6-31 (42)
45 3gwk_C SAG1039, putative uncha 21.9 3.2E+02 0.011 22.1 9.8 21 577-597 51-71 (98)
46 3oja_B Anopheles plasmodium-re 21.5 2.9E+02 0.01 30.4 9.8 41 580-620 546-586 (597)
47 4egw_A Magnesium transport pro 21.1 5.2E+02 0.018 25.5 10.8 36 578-613 230-265 (280)
48 2hh6_A BH3980 protein; 1017660 20.6 1.3E+02 0.0045 26.4 5.1 49 590-641 21-69 (113)
49 4aj5_K Spindle and kinetochore 20.6 3.3E+02 0.011 24.1 7.6 58 552-609 14-74 (123)
50 3oja_A Leucine-rich immune mol 20.3 6.1E+02 0.021 27.1 11.9 69 581-653 410-480 (487)
51 2qfa_C Inner centromere protei 20.2 1.9E+02 0.0065 21.2 4.9 30 579-608 15-45 (47)
No 1
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=100.00 E-value=7.6e-71 Score=619.58 Aligned_cols=375 Identities=26% Similarity=0.386 Sum_probs=331.4
Q ss_pred CCCCCCCCCCCcccccccccCCCCcccccccccCcc--cccHHHHHHHhcccccccc------ccccC-C------CCCC
Q 005376 234 GDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSF--QFNEEMIETLFGYSEKSKN------EKKKG-S------SLDT 298 (699)
Q Consensus 234 ~~~~~Pk~klK~l~W~ki~~~~~~~TiW~~i~~~~~--~~d~~~lE~lF~~~~~~k~------~~kk~-~------~~~~ 298 (699)
+....|+.+||+|||++|..+.+++|||+++++..+ .+|+++||++|+.+..... .+++. . ...+
T Consensus 6 K~~~~P~~klK~l~W~ki~~~~~~~TiW~~~~~~~~~~~ld~~~lE~lF~~~~~~~~~~~~~~~~~k~~~s~~~~~~~~k 85 (483)
T 2j1d_G 6 KSIPQPTNALKSFNWSKLPENKLEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDFFVNSNSKQKEADAIDDTLSSKL 85 (483)
T ss_dssp CCCCCCSSCBCCCCCCCCCGGGCSSSGGGGCCGGGHHHHSCHHHHHHHTBSBC---------------------------
T ss_pred CCCCCCCCCCCCcCceECCcccccCCccCcCCchhhccccCHHHHHHHHhhhcccccccccccccccccccccccccccc
Confidence 556679999999999999888899999999988753 5899999999997643221 01111 0 1223
Q ss_pred CCcceeecChHHHhhHHHHHHhcCCCHHHHHHHhhcCC---CCcHHHHHHHHhcCCCHHHHHHHHhhccccccCChHHHH
Q 005376 299 GPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGN---ELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERF 375 (699)
Q Consensus 299 ~~~~v~iLd~kraqni~I~L~~l~~s~~ei~~al~~~~---~L~~e~l~~Ll~~~Pt~eE~~~l~~~~~d~~~L~~aE~F 375 (699)
+++.|+|||+||+|||+|+|++|++++++|++||+++| .|+.|.|+.|++++||.||+..|+.|.||.+.|+++|||
T Consensus 86 k~~~v~lLD~kRaqNi~I~L~~lk~~~~ei~~aIl~~D~~~~L~~e~l~~Ll~~~Pt~eE~~~l~~~~~d~~~L~~aEqF 165 (483)
T 2j1d_G 86 KVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLEQLLKFVPEKSDIDLLEEHKHELDRMAKADRF 165 (483)
T ss_dssp --CCBCCSCHHHHHHHHHHHHHHCCCHHHHHHHHHTTSTTCCCCHHHHHHHHHSCCCHHHHHHHHTTTTCGGGBCHHHHH
T ss_pred CCCcceeCCHHHHHHHHHHHhcCCCCHHHHHHHHHccCccccCCHHHHHHHHHhCCCHHHHHHHHHhccChhhcCHHHHH
Confidence 67789999999999999999999999999999999876 499999999999999999999999999999999999999
Q ss_pred HHHHcCCcChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcccccCCCCCcceeeeeccc
Q 005376 376 LKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDT 455 (699)
Q Consensus 376 l~~l~~Ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~~~~lL~~vL~~GN~lN~gt~rg~A~GFkL~s 455 (699)
+++|+.||+|..||+||+|+.+|.+.+.+|.+.|.+|..||++|++|+.|+.||++||++|||||+| .||+|+||+|++
T Consensus 166 l~~l~~ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~IL~~GN~mN~g-~rg~A~GFkL~s 244 (483)
T 2j1d_G 166 LFEMSRINHYQQRLQSLYFKKKFAERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKG-QRGNAYGFKISS 244 (483)
T ss_dssp HHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSCS-SSCCCSCCCGGG
T ss_pred HHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhhhccC-CCCCceeeehHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 799999999999
Q ss_pred cccccccccC-CCCccHHHHHHHHHHhhhhhhHHhhhhcccccccccchhhHhhhcCCccchHHHHhhhhhhhcchhhhH
Q 005376 456 LLKLSDVKGV-DGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSEL 534 (699)
Q Consensus 456 L~KL~d~Ks~-d~k~tLLh~lv~~i~~~~~~~~~~~~~e~~s~~~~~~~~ll~~~~~~~~~~e~~~~lgl~~v~~l~~eL 534 (699)
|.||.|||++ |+++|||||||+.|.++. ++ +.+|.+||
T Consensus 245 L~KL~d~Ks~~d~k~TLLhylv~~v~~~~-------------------p~----------------------l~~f~~eL 283 (483)
T 2j1d_G 245 LNKIADTKSSIDKNITLLHYLITIVENKY-------------------PS----------------------VLNLNEEL 283 (483)
T ss_dssp GGGGGGSBCSSCTTCBHHHHHHHHHHHHC-------------------GG----------------------GGGHHHHT
T ss_pred HHhhhhcccCCCCCccHHHHHHHHHHHhC-------------------ch----------------------hhchHHHH
Confidence 9999999995 999999999998765421 11 34688999
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhccc-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005376 535 ENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKN-LGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGD 613 (699)
Q Consensus 535 ~~V~kAa~vd~d~L~~~v~~L~~~l~~~~~~l~~~~~~-~~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~ 613 (699)
.+|.+|++||++.|..++.+|.+++..++..++..-.. .+.++.|..+|..|+..|+.++..|...++++.+.|++++.
T Consensus 284 ~~v~~Askv~~~~l~~~~~~L~~~l~~v~~~l~~~~~~~~~~~d~f~~~m~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~ 363 (483)
T 2j1d_G 284 RDIPQAAKVNMTELDKEISTLRSGLKAVETELEYQKSQPPQPGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVK 363 (483)
T ss_dssp TTHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888653221 24568899999999999999999999999999999999999
Q ss_pred cccCCCCccchhhhcHHHHHHHHHHHHHHHHHHhhhh
Q 005376 614 YFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPK 650 (699)
Q Consensus 614 YFged~~k~e~~~fF~iv~dFl~~l~ka~kEv~~~~k 650 (699)
||||+..+..+++||++|.+|+..|++|++|+.++++
T Consensus 364 yFGEd~~~~~~~~fF~~~~~F~~~f~~A~~en~~~~~ 400 (483)
T 2j1d_G 364 HFGEEAGKIQPDEFFGIFDQFLQAVSEAKQENENMRK 400 (483)
T ss_dssp HTTCCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999976433
No 2
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=100.00 E-value=3.8e-71 Score=615.73 Aligned_cols=378 Identities=28% Similarity=0.391 Sum_probs=333.0
Q ss_pred CCCCCCCCCCcccccccccCCC-CcccccccccCccc--ccHHHHHHHhccccccccccc-------cCCCCCCCCccee
Q 005376 235 DANAPKTKLKPFFWDKVLANPD-NSMVWHQIKSGSFQ--FNEEMIETLFGYSEKSKNEKK-------KGSSLDTGPQYIQ 304 (699)
Q Consensus 235 ~~~~Pk~klK~l~W~ki~~~~~-~~TiW~~i~~~~~~--~d~~~lE~lF~~~~~~k~~~k-------k~~~~~~~~~~v~ 304 (699)
....|+.+||+|||++|..+.+ ++|||.++++..+. -+++.||.+|+.+.......+ +.....++.+.|+
T Consensus 2 k~~~P~~~mK~l~W~ki~~~~~~~~t~W~~~~e~~~~~~~~f~~Le~~F~~~~~~~~~~k~~~~~~~~~~~~~kk~~~v~ 81 (457)
T 3obv_E 2 KVYKPEVQLRRPNWSKFVAEDLSQDCFWTKVKEDRFENNELFAKLTLAFSAQTKTSKAKKDQEGGEEKKSVQKKKVKELK 81 (457)
T ss_dssp CCCCCSSCBCCCCCCEECTTTTCSSSSGGGCCGGGGCCTTHHHHHHHHTBCC-----------------------CCCCS
T ss_pred CCCCCCCCCcCCCceeCCccccCCCceeeeCccccccChhHHHHHHHHhcccccccccccccccccccccccccCCceeE
Confidence 3467999999999999987665 69999999887663 235789999998744221111 1112235678899
Q ss_pred ecChHHHhhHHHHHHhcCCCHHHHHHHhhcCC--CCcHHHHHHHHhcCCCHHHHHHHHhhccccccCChHHHHHHHHcCC
Q 005376 305 IIDQKKAQNLSIMLRALNVTLEEVCDALLEGN--ELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERFLKALVDI 382 (699)
Q Consensus 305 iLd~kraqni~I~L~~l~~s~~ei~~al~~~~--~L~~e~l~~Ll~~~Pt~eE~~~l~~~~~d~~~L~~aE~Fl~~l~~I 382 (699)
|||+||+|||+|+|++|++++++|++||+++| .|+.|.|+.|++++||.||+..|+.|.+|...|+.+|||++.|+.|
T Consensus 82 lLD~kraqNi~I~L~~lk~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l~~~~~d~~~L~~~EqF~~~l~~I 161 (457)
T 3obv_E 82 VLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEYDDLAESEQFGVVMGTV 161 (457)
T ss_dssp SSCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCTTTCCHHHHHHHHHHCCCHHHHHHHHTTTTSGGGSCHHHHHHHHHTSS
T ss_pred ecCHHHHhHHHHHHhccCCCHHHHHHHHHhCCcccCCHHHHHHHHHhCCCHHHHHHHHHhccChhhcCHHHHHHHHHHcc
Confidence 99999999999999999999999999999987 4999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcccccCCCCCcceeeeecccccccccc
Q 005376 383 PFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDV 462 (699)
Q Consensus 383 p~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~~~~lL~~vL~~GN~lN~gt~rg~A~GFkL~sL~KL~d~ 462 (699)
|++..||+||+|+.+|.+.+.+|.+.|..|..||++|++|+.|+.||++||++|||||+|+.+|+|+||+|++|.||.||
T Consensus 162 p~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL~~GN~mN~g~~~g~A~GFkL~sL~KL~d~ 241 (457)
T 3obv_E 162 PRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDT 241 (457)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTTSTTCSCSCBCGGGHHHHTTC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhhhccCCcCCCeeeEehHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccHHHHHHHHHHhhhhhhHHhhhhcccccccccchhhHhhhcCCccchHHHHhhhhhhhcchhhhHHHHHHHhh
Q 005376 463 KGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAA 542 (699)
Q Consensus 463 Ks~d~k~tLLh~lv~~i~~~~~~~~~~~~~e~~s~~~~~~~~ll~~~~~~~~~~e~~~~lgl~~v~~l~~eL~~V~kAa~ 542 (699)
|++|+++|||||||+.+.++ |++ +.+|.+||.+|.+|++
T Consensus 242 Ks~d~k~TLLh~l~~~v~~~------------------------------------~p~-----l~~f~~eL~~v~~Aak 280 (457)
T 3obv_E 242 KSADQKMTLLHFLAELCEND------------------------------------HPE-----VLKFPDELAHVEKASR 280 (457)
T ss_dssp BCSSTTCBHHHHHHHHHHHH------------------------------------CGG-----GGGHHHHCTTHHHHTT
T ss_pred hcCCCCccHHHHHHHHHHHc------------------------------------Ccc-----ccCChhhhhhHHhhcc
Confidence 99999999999999865432 111 3468899999999999
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcc
Q 005376 543 IDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKD 622 (699)
Q Consensus 543 vd~d~L~~~v~~L~~~l~~~~~~l~~~~~~~~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YFged~~k~ 622 (699)
|+++.|..++.+|.+++..++..++......+.++.|..+|..|+..|+.++..|...++++.+.|++++.|||+|+.+.
T Consensus 281 vs~~~l~~dl~~L~~~l~~v~~~l~~~~~~~~~~d~f~~~m~~Fl~~A~~~~~~L~~~~~~~~~~~~~l~~yFgedp~~~ 360 (457)
T 3obv_E 281 VSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKL 360 (457)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999988876444445678999999999999999999999999999999999999999999999
Q ss_pred chhhhcHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005376 623 EGLRLFTIVRDFFIMLDKACKQVKDAPKKST 653 (699)
Q Consensus 623 e~~~fF~iv~dFl~~l~ka~kEv~~~~kr~~ 653 (699)
.+++||++|.+|+.+|++|++|+.+.++.++
T Consensus 361 ~~~eFF~~~~~F~~~fkkA~~eN~~r~e~ee 391 (457)
T 3obv_E 361 SVEEFFMDLHNFRNMFLQAVKENQKRRETEE 391 (457)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999986654433
No 3
>4eah_A Formin-like protein 3, actin, alpha skeletal muscle; ATP binding, cytoskeleton, FMNL3, protein BIN; HET: ATP; 3.40A {Mus musculus}
Probab=100.00 E-value=2.6e-70 Score=600.91 Aligned_cols=374 Identities=23% Similarity=0.379 Sum_probs=323.6
Q ss_pred CCCCCCCCCCCcccccccccCCCCcccccccccCcc--cccHHHHHHHhccccccccc---cccCCCCCCCCcceeecCh
Q 005376 234 GDANAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSF--QFNEEMIETLFGYSEKSKNE---KKKGSSLDTGPQYIQIIDQ 308 (699)
Q Consensus 234 ~~~~~Pk~klK~l~W~ki~~~~~~~TiW~~i~~~~~--~~d~~~lE~lF~~~~~~k~~---~kk~~~~~~~~~~v~iLd~ 308 (699)
+....|+.+||+|||++|..+.+.+|||+++++..+ ++|+++||++|+.+...... ..+.....++++.|+|||+
T Consensus 10 Kk~~~~k~kmk~l~W~kl~~~~i~~Tiw~~~~~~~~~~~ld~~~~E~lF~~k~~~~~~~~~~~k~k~~~k~~~~v~lLd~ 89 (402)
T 4eah_A 10 KKPIKTKFRLPVFNWTALKPNQINGTVFSELDDEKILEDLDLDRFEELFKTKAQGPALDLICSKNKTAQKAASKVTLLEA 89 (402)
T ss_dssp CCCCCCSSCCCCCCCCEECHHHHTTSTTSSCCTTSCSSTTTHHHHHHHSCCCC--------------------CBCSSCH
T ss_pred CCCCCCCCCCCCcCceeCChHhccCccccCCchhhhccccCHHHHHHHHhhcccCCccccchhcccccccCCCceeeCCH
Confidence 445678999999999999988899999999988776 69999999999986432111 0111112245678999999
Q ss_pred HHHhhHHHHHHhcCCCHHHHHHHhhcCC--CCcHHHHHHHHhcCCCHHHHHHHHhhccc---cccCChHHHHHHHHcCCc
Q 005376 309 KKAQNLSIMLRALNVTLEEVCDALLEGN--ELPAELIQTLLKMAPTAEEELKLRLFNGE---LSQLGPAERFLKALVDIP 383 (699)
Q Consensus 309 kraqni~I~L~~l~~s~~ei~~al~~~~--~L~~e~l~~Ll~~~Pt~eE~~~l~~~~~d---~~~L~~aE~Fl~~l~~Ip 383 (699)
||+|||+|+|++|++++++|++||+++| .|+.|.|+.|++++||.||+..|+.|.+| .+.|+++|||++.|+.||
T Consensus 90 kra~Ni~I~L~~l~~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~~~L~~~EqF~~~l~~ip 169 (402)
T 4eah_A 90 NRAKNLAITLRKAGRSAEEICRAIHTFDLQTLPVDFVECLMRFLPTEAEVKLLRQYERERQPLEELAAEDRFMLLFSKVE 169 (402)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHTTSCSCCCHHHHHHHHHTCCCHHHHHHHHHHHHSSCCTTTBCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHcCCcccCCHHHHHHHHhcCCCHHHHHHHHHhhccCCchhhccHHHHHHHHHHccc
Confidence 9999999999999999999999999886 59999999999999999999999999876 478999999999999999
Q ss_pred ChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcccccCCCCCcceeeeeccccccccccc
Q 005376 384 FSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVK 463 (699)
Q Consensus 384 ~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~~~~lL~~vL~~GN~lN~gt~rg~A~GFkL~sL~KL~d~K 463 (699)
++..||+||+|+.+|.+.+.+|.+.|..|..||++|++|+.|++||++||++|||||+| .||+|+||+|++|.||.|||
T Consensus 170 ~~~~Rl~~l~f~~~f~~~~~~l~~~l~~v~~A~~~l~~S~~l~~lL~~iL~~GN~mN~g-~rg~A~GFkL~sL~KL~d~K 248 (402)
T 4eah_A 170 RLTQRMAGMAFLGNFQDNLQMLTPQLNAIIAASASVKSSQKLKQMLEIILALGNYMNSS-KRGAVYGFKLQSLDLLLDTK 248 (402)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCS-SSCCCSCBCGGGGGSSSSSB
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhhccCC-CCCccceeeHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999 69999999999999999999
Q ss_pred cCCCCccHHHHHHHHHHhhhhhhHHhhhhcccccccccchhhHhhhcCCccchHHHHhhhhhhhcchhhhHHHHHHHhhh
Q 005376 464 GVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELENVKKAAAI 543 (699)
Q Consensus 464 s~d~k~tLLh~lv~~i~~~~~~~~~~~~~e~~s~~~~~~~~ll~~~~~~~~~~e~~~~lgl~~v~~l~~eL~~V~kAa~v 543 (699)
++|+++|||||||+.+.++ |++ +.+|.+||.+|.+|++|
T Consensus 249 s~d~k~TLLh~l~~~~~~~------------------------------------~p~-----l~~f~~eL~~v~~Aa~v 287 (402)
T 4eah_A 249 STDRKMTLLHFIALTVKEK------------------------------------YPE-----LANFWQELHFVEKAAAV 287 (402)
T ss_dssp CTTSSSBHHHHHHHHHHHH------------------------------------CGG-----GGTCSTTCCSHHHHHTC
T ss_pred CCCCCccHHHHHHHHHHhh------------------------------------hHH-----HHHHhhhhhhHHHHhcC
Confidence 9999999999999876432 111 34678899999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccc
Q 005376 544 DADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDE 623 (699)
Q Consensus 544 d~d~L~~~v~~L~~~l~~~~~~l~~~~~~~~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YFged~~k~e 623 (699)
|++.|..++.+|.+++..++..+.. ++ ...|..|+..|+.++..|..+++++.+.|++++.||||++.+..
T Consensus 288 ~~~~l~~d~~~L~~~l~~~~~e~~~-------~d--~~~l~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~yFgedpk~~~ 358 (402)
T 4eah_A 288 SLENVLLDVKELGRGMELIRRECSI-------HD--NSVLRNFLSTNEGKLDKLQRDAKTAEEAYNAVVRYFGESPKTTP 358 (402)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHT-------TC--CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcc-------cc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 9999999999999999998876532 11 24899999999999999999999999999999999999999888
Q ss_pred hhhhcHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 005376 624 GLRLFTIVRDFFIMLDKACKQVKDAPKKSTKSLKK 658 (699)
Q Consensus 624 ~~~fF~iv~dFl~~l~ka~kEv~~~~kr~~k~~kk 658 (699)
+++||++|.+|+..|++|++|+.+++++++..+++
T Consensus 359 ~~~fF~~~~~F~~~fk~A~~en~~r~~~e~~~~~~ 393 (402)
T 4eah_A 359 PSVFFPVFVRFIRSYKEAEQENEARKKQEEVMREK 393 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999998877766544443
No 4
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A
Probab=100.00 E-value=2.4e-66 Score=573.40 Aligned_cols=366 Identities=19% Similarity=0.271 Sum_probs=315.6
Q ss_pred CCCCCCCCcccccccccCCCCcccccccccCccc--c----cHHHHHHHhccccccccccccCCCCCCCCcceeecChHH
Q 005376 237 NAPKTKLKPFFWDKVLANPDNSMVWHQIKSGSFQ--F----NEEMIETLFGYSEKSKNEKKKGSSLDTGPQYIQIIDQKK 310 (699)
Q Consensus 237 ~~Pk~klK~l~W~ki~~~~~~~TiW~~i~~~~~~--~----d~~~lE~lF~~~~~~k~~~kk~~~~~~~~~~v~iLd~kr 310 (699)
..|+.+||+|||++|.. +++|||+++++..+. + |+++||++|+.+...+...++ .++.+.|+|||+||
T Consensus 3 p~P~~klK~l~W~ki~~--~~~tiW~~~~~~~~~~~l~~~~d~~~lE~lF~~~~~~~~~~~k----~~~~~~v~lLd~kr 76 (411)
T 1ux5_A 3 PRPHKKLKQLHWEKLDC--TDNSIWGTGKAEKFADDLYEKGVLADLEKAFAAREIKSLASKR----KEDLQKITFLSRDI 76 (411)
T ss_dssp CCCSSCBCCCCCCCCSS--CCSSSCCSSHHHHHHHHHHHTTHHHHHHHHTBSSCCHHHHHHH----HHTTTSBCCSCHHH
T ss_pred CCCCCCCCCcCcccCCC--CCCCcCcCCccHHHHHhhhhhchHHHHHHHhcccccccccccc----cCCCCeeeecChHH
Confidence 57899999999999975 899999999876542 2 789999999987643322111 13456799999999
Q ss_pred HhhHHHHHHhc-CCCHHHHHHHhhcCCC--CcHHH-HHH------------HH-hcCCCHHHHH------HHHhhccccc
Q 005376 311 AQNLSIMLRAL-NVTLEEVCDALLEGNE--LPAEL-IQT------------LL-KMAPTAEEEL------KLRLFNGELS 367 (699)
Q Consensus 311 aqni~I~L~~l-~~s~~ei~~al~~~~~--L~~e~-l~~------------Ll-~~~Pt~eE~~------~l~~~~~d~~ 367 (699)
+|||+|+|++| ++++++|++||+++|. |+.+. |+. |+ +++|+.+|++ .++.|.||.+
T Consensus 77 aqNi~I~L~~~~~~~~~ei~~ai~~~D~~~L~~~~lie~L~~~~~~ei~~~L~~~~~P~~~e~e~l~~~~~~~~~~~d~~ 156 (411)
T 1ux5_A 77 SQQFGINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEFLSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEKDPN 156 (411)
T ss_dssp HHHHHHHTGGGTTSCHHHHHHHHHTTTHHHHTCHHHHHHTTCHHHHCCCHHHHHHTGGGCCCCTTCCCGGGCCCCSSCST
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhcChhhcCHHHHHHHhchhHHHhhHHHHHHhcCCCchhHHHHHHHHHhhhccCChh
Confidence 99999999998 8999999999999884 76332 333 45 6999888764 3346678999
Q ss_pred cCChHHHHHHHHc-CC-cChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcccccCCCCC
Q 005376 368 QLGPAERFLKALV-DI-PFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFR 445 (699)
Q Consensus 368 ~L~~aE~Fl~~l~-~I-p~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~~~~lL~~vL~~GN~lN~gt~r 445 (699)
.|+++|||+++|+ .| +++..||+||+|+.+|++.+.+|++.|..|..||++|++|+.|++||++||++|||||+|+.
T Consensus 157 ~L~~~eqf~~~l~~~i~~~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~iL~~GN~mN~g~~- 235 (411)
T 1ux5_A 157 DLQRADQIYLQLMVNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTSK- 235 (411)
T ss_dssp TBCHHHHHHHHTTTTTTTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSCGGG-
T ss_pred hCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhCcccCCCC-
Confidence 9999999999986 79 57899999999999999999999999999999999999999999999999999999999985
Q ss_pred cceeeeeccccccccccccCCCCccHHHHHHHHHHhhhhhhHHhhhhcccccccccchhhHhhhcCCccchHHHHhhhhh
Q 005376 446 GGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQ 525 (699)
Q Consensus 446 g~A~GFkL~sL~KL~d~Ks~d~k~tLLh~lv~~i~~~~~~~~~~~~~e~~s~~~~~~~~ll~~~~~~~~~~e~~~~lgl~ 525 (699)
+|+||+|++|.||.|||++|+++|||||||+.+.++ . ++
T Consensus 236 -~A~GFkL~sL~KL~d~Ks~d~k~TLLh~l~~~v~~~-~------------------p~--------------------- 274 (411)
T 1ux5_A 236 -QAQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLN-Y------------------PS--------------------- 274 (411)
T ss_dssp -CCSCCCGGGGGGSSSCBCTTSCSBHHHHHHHHHHHH-C------------------GG---------------------
T ss_pred -CeeEeehhHHHHHHHhhCCCCCccHHHHHHHHHHHh-C------------------cc---------------------
Confidence 799999999999999999999999999999865332 1 11
Q ss_pred hhcchhhhHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhh-cc---ccCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 005376 526 AVSHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTD-MK---NLGENSGFHETLKSFVQNAEGDIMWLLEEE 601 (699)
Q Consensus 526 ~v~~l~~eL~~V~kAa~vd~d~L~~~v~~L~~~l~~~~~~l~~~-~~---~~~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~ 601 (699)
+.+|.+||.+|.+|++||++.|..++.+|.+++.+++..++.. ++ ..++++.|.+.|..|+..|+.++..|.+.+
T Consensus 275 -l~~f~~eL~~v~~Aakv~~~~l~~d~~~L~~~l~~v~~~l~~~~~s~~~~~~~~d~f~~~~~~fl~~a~~~~~~l~~~~ 353 (411)
T 1ux5_A 275 -FNDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKGDLLEDEV 353 (411)
T ss_dssp -GGGHHHHTHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTTCTTSSCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cccccchhhhHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999999999999999999999999999999887642 11 235678999999999999999999999999
Q ss_pred HHHHHHHHhhcccccCCCC-ccchhhhcHHHHHHHHHHHHHHHHHHhhhhh
Q 005376 602 KRIMSLVKSTGDYFHGNAG-KDEGLRLFTIVRDFFIMLDKACKQVKDAPKK 651 (699)
Q Consensus 602 ~~~~~~~k~l~~YFged~~-k~e~~~fF~iv~dFl~~l~ka~kEv~~~~kr 651 (699)
+++.+.|++++.||||+.. +..+++||++|++|+..|++|++|+.+.++.
T Consensus 354 ~~~~~~~~~l~~yfged~~~~~~~~~fF~~~~~F~~~f~~a~~en~~~~e~ 404 (411)
T 1ux5_A 354 KLTIMEFESLMHTYGEDSGDKFAKISFFKKFADFINEYKKAQAQNLAAEEE 404 (411)
T ss_dssp HHHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 4578999999999999999999999864443
No 5
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=100.00 E-value=7.3e-65 Score=547.97 Aligned_cols=316 Identities=30% Similarity=0.407 Sum_probs=269.3
Q ss_pred CCCcceeecChHHHhhHHHHHHhcCCCHHHHHHHhhcCC--CCcHHHHHHHHhcCCCHHHHHHHHhhccccccCChHHHH
Q 005376 298 TGPQYIQIIDQKKAQNLSIMLRALNVTLEEVCDALLEGN--ELPAELIQTLLKMAPTAEEELKLRLFNGELSQLGPAERF 375 (699)
Q Consensus 298 ~~~~~v~iLd~kraqni~I~L~~l~~s~~ei~~al~~~~--~L~~e~l~~Ll~~~Pt~eE~~~l~~~~~d~~~L~~aE~F 375 (699)
++.+.|+|||+||+|||+|+|++|++++++|++||+++| .|+.|.|+.|++++||.||+..|+.|.||...|+++|||
T Consensus 4 kk~~~i~vLD~kraqNi~I~L~~~k~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~L~~~EqF 83 (340)
T 1v9d_A 4 KKVKELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEYDDLAESEQF 83 (340)
T ss_dssp --CCCCSSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCTTTCCHHHHHHHHHHSCCHHHHHHHHTCGGGGGGSCHHHHH
T ss_pred CCCCeeeecCHHHHhHHHHHHhhcCCCHHHHHHHHHhCCcccCCHHHHHHHHccCCCHHHHHHHHHhhCChhhcCHHHHH
Confidence 466789999999999999999999999999999999987 499999999999999999999999999999999999999
Q ss_pred HHHHcCCcChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcccccCCCCCcceeeeeccc
Q 005376 376 LKALVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDT 455 (699)
Q Consensus 376 l~~l~~Ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~~~~lL~~vL~~GN~lN~gt~rg~A~GFkL~s 455 (699)
++.|+.||++..||+||+|+.+|.+.+.+|.+.|.+|..||++|++|+.|++||++||++|||||+|+.||+|+||+|++
T Consensus 84 ~~~l~~ip~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~iL~~GN~mN~g~~~g~A~GFkL~s 163 (340)
T 1v9d_A 84 GVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISF 163 (340)
T ss_dssp HHHHHTSTTHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTCHHHHHCC------------------------CC
T ss_pred HHHHHCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHcCcCCCCCCCCceeeeehHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCccHHHHHHHHHHhhhhhhHHhhhhcccccccccchhhHhhhcCCccchHHHHhhhhhhhcchhhhHH
Q 005376 456 LLKLSDVKGVDGKTTLLHFVVQEIIRSEGVRAARRARESRSFSSVKTDDLLEETSKSNETDEHYRNLGLQAVSHLSSELE 535 (699)
Q Consensus 456 L~KL~d~Ks~d~k~tLLh~lv~~i~~~~~~~~~~~~~e~~s~~~~~~~~ll~~~~~~~~~~e~~~~lgl~~v~~l~~eL~ 535 (699)
|.||.|||++|+++|||||||+.+.++ + ++ +.+|.+||.
T Consensus 164 L~KL~d~Ks~d~k~TLLh~lv~~~~~~--------------~-----p~----------------------l~~f~~eL~ 202 (340)
T 1v9d_A 164 LCKLRDTKSADQKMTLLHFLAELCEND--------------H-----PE----------------------VLKFPDELA 202 (340)
T ss_dssp HHHHHHSBCSSTTSBHHHHHHHHHHHS--------------C-----CT----------------------TSSGGGGCT
T ss_pred HHhhhhhcCCCCCccHHHHHHHHHHHh--------------C-----ch----------------------hccchhHHH
Confidence 999999999999999999999865432 1 11 346889999
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 005376 536 NVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYF 615 (699)
Q Consensus 536 ~V~kAa~vd~d~L~~~v~~L~~~l~~~~~~l~~~~~~~~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YF 615 (699)
+|.+|++||++.|..++.+|.+++..++..++...+..++++.|.++|..|+..|+.++..|...++++.+.|++++.||
T Consensus 203 ~v~~Askvs~~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~d~f~~~m~~Fl~~a~~~~~~l~~~~~~~~~~~~~l~~yf 282 (340)
T 1v9d_A 203 HVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYF 282 (340)
T ss_dssp THHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988876544445667899999999999999999999999999999999999999
Q ss_pred cCCCCccchhhhcHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 005376 616 HGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKSTK 654 (699)
Q Consensus 616 ged~~k~e~~~fF~iv~dFl~~l~ka~kEv~~~~kr~~k 654 (699)
|+|+.+..+++||++|++|+.+|++||+|+.+.++.+++
T Consensus 283 ged~~~~~~~~fF~~~~~F~~~f~~a~~en~~r~e~eek 321 (340)
T 1v9d_A 283 VFDPKKLSVEEFFMDLHNFRNMFLQAVKENQKRRETEEK 321 (340)
T ss_dssp TCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999886655543
No 6
>1cee_B Wiskott-aldrich syndrome protein WAsp; CDC42 actin regulator GTPase and the GTPase binding domain of ITS effector WAsp; HET: GCP; NMR {Homo sapiens}
Probab=97.17 E-value=0.00011 Score=58.02 Aligned_cols=31 Identities=26% Similarity=0.213 Sum_probs=28.5
Q ss_pred CCcccccccCCCCCCCcCCCCCCCCCCCCCC
Q 005376 79 NSKEEKLDIGKFDGTASFGAVGGTAKSFNEN 109 (699)
Q Consensus 79 ~~k~~k~g~~~~~~~~~~~~~~~~~~~~~~~ 109 (699)
++|++|.+|+.|++|.|+.||||++++||+.
T Consensus 1 ~~k~~k~~Is~Ptnf~Hv~HvG~d~~~gf~~ 31 (59)
T 1cee_B 1 KKKISKADIGAPSGFKHVSHVGWDPQNGFDV 31 (59)
T ss_dssp CCCCCTTTSCCCCCCEEEEEECCCTTTCCCC
T ss_pred CCCCCCCcccCCCCCCCcceeccCCCCCccc
Confidence 4689999999999999999999999999864
No 7
>2qme_I CRIB domain of the serine/threonine-protein kinas; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3; HET: GCP; 1.75A {Homo sapiens}
Probab=93.07 E-value=0.012 Score=41.50 Aligned_cols=22 Identities=18% Similarity=-0.079 Sum_probs=20.1
Q ss_pred ccCCCCCCCcCCCCCCCCCCCC
Q 005376 86 DIGKFDGTASFGAVGGTAKSFN 107 (699)
Q Consensus 86 g~~~~~~~~~~~~~~~~~~~~~ 107 (699)
+|+.|++|+|+.||||++++|+
T Consensus 1 ~Is~Ptnf~H~~Hvg~d~~tG~ 22 (36)
T 2qme_I 1 EISLPSDFEHTIHVGFDAVTGE 22 (36)
T ss_dssp CBCCCEEEEEEEEECCBTTTTB
T ss_pred CCcCCCCCCCeeEcccCCCCCc
Confidence 4788999999999999999985
No 8
>2lnh_A N-WAsp, neural wiskott-aldrich syndrome protein; protein complex, signaling protein-protein binding complex; NMR {Homo sapiens}
Probab=92.46 E-value=0.033 Score=44.61 Aligned_cols=20 Identities=15% Similarity=0.094 Sum_probs=17.7
Q ss_pred CCCCcCCCCCCCCCCCCCCC
Q 005376 91 DGTASFGAVGGTAKSFNENG 110 (699)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~ 110 (699)
++|+|+.|||||+++||+..
T Consensus 2 tnF~Hv~HVG~D~~tGf~~~ 21 (65)
T 2lnh_A 2 SNFQHIGHVGWDPNTGFDLN 21 (65)
T ss_dssp CCCSSCCSCCEETTTEECGG
T ss_pred CCCEeeeeeeeCCCCCcCCc
Confidence 68999999999999998654
No 9
>2odb_B Serine/threonine-protein kinase PAK 6; small GTPase, CRIB, protein-protein complex, structu genomics, structural genomics consortium, SGC; HET: GCP; 2.40A {Homo sapiens}
Probab=90.88 E-value=0.018 Score=40.41 Aligned_cols=22 Identities=9% Similarity=-0.167 Sum_probs=19.9
Q ss_pred ccCCCCCCCcCCCCCCCCCCCC
Q 005376 86 DIGKFDGTASFGAVGGTAKSFN 107 (699)
Q Consensus 86 g~~~~~~~~~~~~~~~~~~~~~ 107 (699)
+|+.|++|+|+.|||||+++|+
T Consensus 1 ~Is~Ptnf~H~~Hvg~d~~tG~ 22 (35)
T 2odb_B 1 EISAPQNFQHRVHTSFDPKEGK 22 (35)
T ss_dssp CBCCCEEEEEEEEEEEETTTTE
T ss_pred CCcCCCCCcCeeeeeECCCCCc
Confidence 4788999999999999999883
No 10
>1ej5_A WAsp, wiskott-aldrich syndrome protein; alpha helix, beta-hairpin turn, blood clotting; NMR {Homo sapiens} SCOP: a.68.1.1 PDB: 1t84_A* 2k42_A
Probab=89.93 E-value=0.12 Score=45.44 Aligned_cols=13 Identities=15% Similarity=0.320 Sum_probs=7.2
Q ss_pred hhccCCCCCCCCC
Q 005376 686 TERRVEDFSSDEE 698 (699)
Q Consensus 686 ~~r~~~~~~~~~~ 698 (699)
++|-++||++|||
T Consensus 92 r~~~i~s~~e~~~ 104 (107)
T 1ej5_A 92 RSRAIHSSDEGED 104 (107)
T ss_dssp GSSCCCCCCSSCC
T ss_pred HhhcccCCCcccc
Confidence 3445666665554
No 11
>1f3m_A Serine/threonine-protein kinase PAK-alpha; kinase domain, autoinhibitory fragment, homodimer, transferase; 2.30A {Homo sapiens} SCOP: j.66.1.1 PDB: 1e0a_B* 1ees_B
Probab=89.92 E-value=0.038 Score=46.18 Aligned_cols=25 Identities=20% Similarity=-0.016 Sum_probs=17.0
Q ss_pred cccccCCCCCCCcCCCCCCCCCCCC
Q 005376 83 EKLDIGKFDGTASFGAVGGTAKSFN 107 (699)
Q Consensus 83 ~k~g~~~~~~~~~~~~~~~~~~~~~ 107 (699)
.|.+|+.|++|+|+.||||++.+|+
T Consensus 2 ~~~~Is~Ptnf~H~~HVg~D~~tG~ 26 (80)
T 1f3m_A 2 ERPEISLPSDFEHTIHVGFDAVTGE 26 (80)
T ss_dssp -------CCSSEEEEEEEEETTTTE
T ss_pred CCCccCCCCCCCCeeecccCCCCCc
Confidence 4678999999999999999999885
No 12
>2ov2_I Serine/threonine-protein kinase PAK 4; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3, signalling protein; HET: GCP; 2.10A {Homo sapiens}
Probab=89.61 E-value=0.029 Score=39.28 Aligned_cols=21 Identities=10% Similarity=-0.100 Sum_probs=19.3
Q ss_pred ccCCCCCCCcCCCCCCCCCCC
Q 005376 86 DIGKFDGTASFGAVGGTAKSF 106 (699)
Q Consensus 86 g~~~~~~~~~~~~~~~~~~~~ 106 (699)
+|++|++|+|+.||||++++|
T Consensus 1 ~IS~Ptnf~H~~Hvg~d~~tg 21 (35)
T 2ov2_I 1 EISAPSNFEHRVHTGFDQHEQ 21 (35)
T ss_dssp CBCCCEEEEEEEEEEEETTTT
T ss_pred CCcCCCCCcCeeeeeeCCCCC
Confidence 478899999999999999888
No 13
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=72.99 E-value=78 Score=31.48 Aligned_cols=57 Identities=14% Similarity=0.077 Sum_probs=39.4
Q ss_pred HcCCcChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhc-----HHHHHHHHHHHHhcccccC
Q 005376 379 LVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNS-----RLFLKLLEAVLKTGNRMND 441 (699)
Q Consensus 379 l~~Ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S-----~~~~~lL~~vL~~GN~lN~ 441 (699)
+.+=|.++..|.. |++.+..++..|..+..+|+.+.++ .....+...+..+|+..++
T Consensus 13 ~~DSP~FR~~l~~------~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~ 74 (265)
T 2q12_A 13 LEDSPQTRSLLGV------FEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFP 74 (265)
T ss_dssp CCSHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCCC
T ss_pred hcCChHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3455666665554 6788888999999998888877653 3455677777777765433
No 14
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=52.18 E-value=30 Score=31.54 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=29.5
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcchhhHHHHHHHHHHHHHHHHHH
Q 005376 542 AIDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLE 599 (699)
Q Consensus 542 ~vd~d~L~~~v~~L~~~l~~~~~~l~~~~~~~~~~~~F~~~m~~Fl~~Ae~~i~~L~e 599 (699)
.-++..+...|....-.++++++. ++.++=++..|....+.++.+-+.++..+.+
T Consensus 67 ~~eL~~m~~~i~~ekP~WKKiWE~---EL~~VceEQqfl~~QedL~~DL~eDL~ka~e 121 (141)
T 3okq_A 67 QADVLKLQEFIDTEKPHWKKTWEA---ELDKVCEEQQFLTLQEELILDLKEDLGKALE 121 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCchhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666542 2222222345666666666666655555444
No 15
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=50.21 E-value=26 Score=29.86 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=23.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005376 578 GFHETLKSFVQNAEGDIMWLLEEEKRIMSLV 608 (699)
Q Consensus 578 ~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~ 608 (699)
.+...++.|++.|.+.|..|.+..+-+.+.|
T Consensus 56 ~l~s~l~~f~e~a~e~vp~L~~~i~vle~~~ 86 (94)
T 3fx7_A 56 NLKSTFNEFDEAAQEQIAWLKERIRVLEEDY 86 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHhHHHHHHHHHhHHHH
Confidence 4567888999999999888887766555443
No 16
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=42.58 E-value=2.3e+02 Score=27.06 Aligned_cols=26 Identities=12% Similarity=-0.096 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhh
Q 005376 630 IVRDFFIMLDKACKQVKDAPKKSTKS 655 (699)
Q Consensus 630 iv~dFl~~l~ka~kEv~~~~kr~~k~ 655 (699)
-|.+|+..|...++...-++.|.++=
T Consensus 159 dv~~Fl~~y~~~R~~yH~RreK~~rw 184 (192)
T 2p22_C 159 DLDQFIKNYLDIRTQYHLRREKLATW 184 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999997777776543
No 17
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=41.31 E-value=1.4e+02 Score=25.38 Aligned_cols=63 Identities=13% Similarity=0.159 Sum_probs=44.1
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHhhhh---ccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005376 541 AAIDADSLTGTVSKLGHALLKTRDFLNTD---MKNLGENSGFHETLKSFVQNAEGDIMWLLEEEKRIM 605 (699)
Q Consensus 541 a~vd~d~L~~~v~~L~~~l~~~~~~l~~~---~~~~~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~ 605 (699)
...+.+.=...|.++...|..+.+.|++. ..++ ...+...|..-|..++.++..|+.+++++.
T Consensus 29 ~~~~geerk~~i~~ie~~l~EA~ell~qMelE~r~~--p~~~R~~~~~klr~Yk~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 29 PRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREI--PPQSRGMYSNRMRSYKQEMGKLETDFKRSR 94 (102)
T ss_dssp GGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--CTTTHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566778888888888777542 2233 346788899999999999999888776543
No 18
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=40.33 E-value=1.4e+02 Score=29.59 Aligned_cols=25 Identities=12% Similarity=0.264 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHh
Q 005376 396 CTLQEEVSATKESFEILEVACKELR 420 (699)
Q Consensus 396 ~~f~~~~~~l~~~l~~l~~A~~~l~ 420 (699)
.++++++.++...++.+..+|+.|.
T Consensus 27 Tel~~d~~~lE~r~d~~k~~~~kl~ 51 (256)
T 1zww_A 27 TKLDDDFKEMERKVDVTSRAVMEIM 51 (256)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888888888887764
No 19
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=39.85 E-value=1.7e+02 Score=24.66 Aligned_cols=66 Identities=11% Similarity=0.085 Sum_probs=43.5
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHhhh---hccccCCCcchhhHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 005376 541 AAIDADSLTGTVSKLGHALLKTRDFLNT---DMKNLGENSGFHETLKSFVQNAEGDIMW-LLEEEKRIMS 606 (699)
Q Consensus 541 a~vd~d~L~~~v~~L~~~l~~~~~~l~~---~~~~~~~~~~F~~~m~~Fl~~Ae~~i~~-L~e~~~~~~~ 606 (699)
...+.+.=...|..+..++..+.+.|.+ +..++.....+...|..-|..++.++.. |+.+++++..
T Consensus 25 ~~~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l~d 94 (97)
T 3onj_A 25 PSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSLVD 94 (97)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445455555667777777777766543 1233322345788888888999999998 8887776653
No 20
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=38.69 E-value=39 Score=35.36 Aligned_cols=31 Identities=6% Similarity=-0.123 Sum_probs=15.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005376 578 GFHETLKSFVQNAEGDIMWLLEEEKRIMSLV 608 (699)
Q Consensus 578 ~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~ 608 (699)
.|......-+...+.....+...++.+..-|
T Consensus 252 ~Fl~~a~~~~~~l~~~~~~~~~~~~~l~~yf 282 (340)
T 1v9d_A 252 SFVKDAQEQYNKLRMMHSNMETLYKELGDYF 282 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444445555555555544
No 21
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=37.03 E-value=6.9 Score=42.60 Aligned_cols=27 Identities=7% Similarity=0.051 Sum_probs=0.0
Q ss_pred cccccccCCCCCCCcCCCCCCCCCCCC
Q 005376 81 KEEKLDIGKFDGTASFGAVGGTAKSFN 107 (699)
Q Consensus 81 k~~k~g~~~~~~~~~~~~~~~~~~~~~ 107 (699)
|-+|.+|+.|.||.|.-|||.|+.+|.
T Consensus 2 ~~~~~~is~p~n~~h~~hvg~d~~tg~ 28 (423)
T 4fie_A 2 RKKRVEISAPSNFEHRVHTGFDQHEQK 28 (423)
T ss_dssp ---------------------------
T ss_pred CCCCCcccCCCCCCceeecCccCCCCC
Confidence 346788999999999999999998873
No 22
>3rh3_A Uncharacterized DUF3829-like protein; all alpha protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=35.80 E-value=3e+02 Score=27.56 Aligned_cols=116 Identities=13% Similarity=0.145 Sum_probs=59.0
Q ss_pred hhHHHHHHHhhhcHHHHHHHHH----HHHHHHHHHHHHhhhhccccCCCcchhhHHHHHHHHHHHHHHH---HHH---HH
Q 005376 532 SELENVKKAAAIDADSLTGTVS----KLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMW---LLE---EE 601 (699)
Q Consensus 532 ~eL~~V~kAa~vd~d~L~~~v~----~L~~~l~~~~~~l~~~~~~~~~~~~F~~~m~~Fl~~Ae~~i~~---L~e---~~ 601 (699)
.+|.....+-.-+++.+.+.+. +....|.+.+..+..+|. +-.+..++.|+.|++.|++.+-. |++ ..
T Consensus 90 ~~lf~s~~~~yan~~~~~SYlk~ed~~~~akL~~~~~~l~~em~--e~k~~ifd~lsp~aeqAE~vlL~DhPLKeqIla~ 167 (264)
T 3rh3_A 90 AGLFNVRTQFYDNFNKFLAYKKSKDTAKTAQLLDENYKLSVELS--EYKQVIFDILSPLTEQAESELLADEPLKDQIMAM 167 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhHHHHHHHHHHHccCchHHHHHHH
Confidence 3444444444455555554442 344444444444444444 22356788889999888864321 111 12
Q ss_pred HHHHHHHHhhcccccCC----CC-----------------ccch----hhhcHHHHHHHHHHHHHHHHHHhhh
Q 005376 602 KRIMSLVKSTGDYFHGN----AG-----------------KDEG----LRLFTIVRDFFIMLDKACKQVKDAP 649 (699)
Q Consensus 602 ~~~~~~~k~l~~YFged----~~-----------------k~e~----~~fF~iv~dFl~~l~ka~kEv~~~~ 649 (699)
++|...+.++++-|.-. .. |-+. .+--..+++|+...+...+++++.+
T Consensus 168 kkm~~~~~~~~~l~~rq~~~D~~rld~~~~el~~qLeaa~kLp~~~~~~~e~~~y~~flk~~e~f~~~lrk~k 240 (264)
T 3rh3_A 168 RKMSGTVQSIMNLYSRKHAMDGVRIDLKMAELEKELKAAEKIPAVTGYDEELKNFQSFLSTVKSFMNDMQKAR 240 (264)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444333222 11 1111 2333577888888888888877643
No 23
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=33.44 E-value=4.3e+02 Score=27.46 Aligned_cols=54 Identities=15% Similarity=0.115 Sum_probs=38.7
Q ss_pred HcCCcChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhc-----HHHHHHHHHHHHhccc
Q 005376 379 LVDIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNS-----RLFLKLLEAVLKTGNR 438 (699)
Q Consensus 379 l~~Ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S-----~~~~~lL~~vL~~GN~ 438 (699)
+.+=|.++..|.. |+++++.++..|..+.++|+.+.++ ..+..+...++.+++.
T Consensus 13 ~~DSP~FR~~l~~------~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~ 71 (385)
T 2q13_A 13 LEDSPQTRSLLGV------FEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQ 71 (385)
T ss_dssp TTCCHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS
T ss_pred hcCCHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4566667766655 6788888999999999998877653 3356677777776653
No 24
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=33.18 E-value=1.3e+02 Score=29.98 Aligned_cols=92 Identities=9% Similarity=0.042 Sum_probs=45.3
Q ss_pred cchhhhHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhccccC----------CC---cc-hhhHHHHHHHHHHHH
Q 005376 528 SHLSSELENVKKAAAIDADSLTGTVSKLGHALLKTRDFLNTDMKNLG----------EN---SG-FHETLKSFVQNAEGD 593 (699)
Q Consensus 528 ~~l~~eL~~V~kAa~vd~d~L~~~v~~L~~~l~~~~~~l~~~~~~~~----------~~---~~-F~~~m~~Fl~~Ae~~ 593 (699)
..|..+.....|...-+...+...+.+....+.+++..+....+..+ .+ .+ =.+++..-+..+..+
T Consensus 101 ~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e~e~a~~~~~~a~~~~~~s~~~~eK~~~k~~~~~~~ 180 (301)
T 2efk_A 101 TKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLDQDINATKADVEKAKQQAHLRSHM 180 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555666666556666555554433221110 00 00 023344444445555
Q ss_pred HHHHHHHHHHHHHHHHhh-cccccCCC
Q 005376 594 IMWLLEEEKRIMSLVKST-GDYFHGNA 619 (699)
Q Consensus 594 i~~L~e~~~~~~~~~k~l-~~YFged~ 619 (699)
+.....+|......+... -.||..+-
T Consensus 181 ~~~a~~~Y~~~v~~~n~~~~~~~~~~~ 207 (301)
T 2efk_A 181 AEESKNEYAAQLQRFNRDQAHFYFSQM 207 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666555 45665543
No 25
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=32.65 E-value=61 Score=24.40 Aligned_cols=43 Identities=26% Similarity=0.205 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcccccCC
Q 005376 398 LQEEVSATKESFEILEVACKELRNSRLFLKLLEAVLKTGNRMNDG 442 (699)
Q Consensus 398 f~~~~~~l~~~l~~l~~A~~~l~~S~~~~~lL~~vL~~GN~lN~g 442 (699)
++.++..|+..+..-.+|+.+|.+ ....+--.|-++-||+|.-
T Consensus 2 le~~I~~Lk~ai~~TNeAV~~L~~--g~~~la~Av~~iQ~~IN~~ 44 (51)
T 3kpe_A 2 LEGEVNKIKSALLSTNKAVVSLSN--GVSVLTSKVLDLKNYIDKQ 44 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 467888889999999999988854 4555667788888998864
No 26
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=32.22 E-value=1.8e+02 Score=32.07 Aligned_cols=65 Identities=17% Similarity=0.102 Sum_probs=39.5
Q ss_pred cHHHHHHHHH-HHHHHHHHHHHHhhhhccccCCCcchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcccc
Q 005376 544 DADSLTGTVS-KLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEK-RIMSLVKSTGDYF 615 (699)
Q Consensus 544 d~d~L~~~v~-~L~~~l~~~~~~l~~~~~~~~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~~-~~~~~~k~l~~YF 615 (699)
|.++...++. +|++.+..+++.|+.++.. ...|+.-|++-..+|.+|..+.. ++...-..+..|+
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekVdnQlsn-------IrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~ 169 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKVIEKVQH-------IQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRAL 169 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 5666666665 8888888888777665532 35667666666666666655443 2333333444554
No 27
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=31.87 E-value=9.8 Score=42.34 Aligned_cols=7 Identities=29% Similarity=0.287 Sum_probs=3.5
Q ss_pred HHHHHHh
Q 005376 274 EMIETLF 280 (699)
Q Consensus 274 ~~lE~lF 280 (699)
++.|++-
T Consensus 158 ~~ae~~L 164 (535)
T 2h8h_A 158 RESERLL 164 (535)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4555544
No 28
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=31.41 E-value=2.3e+02 Score=23.63 Aligned_cols=105 Identities=10% Similarity=0.076 Sum_probs=49.9
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcchhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 005376 543 IDADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNA---EGDIMWLLEEEKRIMSLVKSTGDYFHGNA 619 (699)
Q Consensus 543 vd~d~L~~~v~~L~~~l~~~~~~l~~~~~~~~~~~~F~~~m~~Fl~~A---e~~i~~L~e~~~~~~~~~k~l~~YFged~ 619 (699)
+++.....++..|...|..++..+.. ...+..+ .+.+..-+... +.+|.........+......++.- +..
T Consensus 2 l~L~~f~~~l~el~~WL~e~e~~l~~-~~~~~~d---~~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~--~~~ 75 (118)
T 3uul_A 2 MDLDSYQIALEEVLTWLLSAEDTFQE-QDDISDD---VEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQ--GTL 75 (118)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHT-SCCCCSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCS
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCC
Confidence 34555566677777777777665543 1222222 23333333332 334444444444444444444431 111
Q ss_pred CccchhhhcHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005376 620 GKDEGLRLFTIVRDFFIMLDKACKQVKDAPKKST 653 (699)
Q Consensus 620 ~k~e~~~fF~iv~dFl~~l~ka~kEv~~~~kr~~ 653 (699)
...+...+=.-+.+.-..|+..+....+.+++.+
T Consensus 76 ~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~L~ 109 (118)
T 3uul_A 76 SDEEEFEIQEQMTLLNARWEALRVESMERQSRLH 109 (118)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122233334556666667777766666665543
No 29
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=31.14 E-value=3e+02 Score=24.98 Aligned_cols=62 Identities=19% Similarity=0.108 Sum_probs=37.1
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccchhhhcHHHHHHHHHH
Q 005376 575 ENSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIML 638 (699)
Q Consensus 575 ~~~~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YFged~~k~e~~~fF~iv~dFl~~l 638 (699)
...+..+.+..=|..|..++..+.+..+...-.++.+++- |=..-++-..||..-.+++..|
T Consensus 51 P~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~--EL~~VceEQqfl~~QedL~~DL 112 (141)
T 3okq_A 51 PAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEA--ELDKVCEEQQFLTLQEELILDL 112 (141)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777788888888887777777777766641 1111123345666555555444
No 30
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=31.04 E-value=64 Score=35.28 Aligned_cols=61 Identities=8% Similarity=-0.059 Sum_probs=31.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccchhh-hcHHHHHHHHHHHHHH
Q 005376 578 GFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLR-LFTIVRDFFIMLDKAC 642 (699)
Q Consensus 578 ~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YFged~~k~e~~~-fF~iv~dFl~~l~ka~ 642 (699)
.|......=+...+.....+...++.+..-|.+-. .....++-+. |...+.+|-.......
T Consensus 323 ~Fl~~A~~~~~~L~~~~~~~~~~~~~l~~yFgedp----~~~~~~eFF~~~~~F~~~fkkA~~eN~ 384 (457)
T 3obv_E 323 SFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDP----KKLSVEEFFMDLHNFRNMFLQAVKENQ 384 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCT----TTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555566666666666553211 1223345443 3344566766664443
No 31
>2hfi_A Hypothetical protein YPPE; YPPE_bacsu, GFT structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Bacillus subtilis} SCOP: a.24.26.1 PDB: 2im8_A
Probab=30.67 E-value=3e+02 Score=24.72 Aligned_cols=52 Identities=19% Similarity=0.107 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 005376 550 GTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLEEEK 602 (699)
Q Consensus 550 ~~v~~L~~~l~~~~~~l~~~~~~~~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~~ 602 (699)
.-..+|...+..+...+++ .+..+.+-+|+..++.|++.....+..+.....
T Consensus 8 ~lteqLi~~~~e~~~~y~~-~ke~~~e~DF~~eVKPf~d~vd~~l~~w~~~a~ 59 (131)
T 2hfi_A 8 EMTEQMIEVAEKGADRYQE-GKNSNHSYDFFETIKPAVEENDELAARWAEGAL 59 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTSSCCCCCSSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHcCCCCCccccccchHHHHHHHHHHHHHHHH
Confidence 3344444444444444432 223344567999999999999888777665443
No 32
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=29.43 E-value=2e+02 Score=24.46 Aligned_cols=54 Identities=15% Similarity=0.148 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh---ccccCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 005376 546 DSLTGTVSKLGHALLKTRDFLNTD---MKNLGENSGFHETLKSFVQNAEGDIMWLLEEE 601 (699)
Q Consensus 546 d~L~~~v~~L~~~l~~~~~~l~~~---~~~~~~~~~F~~~m~~Fl~~Ae~~i~~L~e~~ 601 (699)
+.=...|.+++..|..+++.|++. ..++ ...+...|..-|..++.++..|+.++
T Consensus 45 e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~--p~s~R~~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEMEEELRYA--PLTFRNPMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 555566778888888888777541 2223 34577888888888888888876543
No 33
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=28.08 E-value=2.7e+02 Score=29.94 Aligned_cols=45 Identities=7% Similarity=0.079 Sum_probs=25.3
Q ss_pred CCcChHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcHHHHHH
Q 005376 381 DIPFSFKRLEALLFMCTLQEEVSATKESFEILEVACKELRNSRLFLKL 428 (699)
Q Consensus 381 ~Ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~~~~l 428 (699)
.|..+..||+.+=. +.+++++|..+++..............++.|
T Consensus 129 sv~~L~~kLke~p~---I~~~i~~i~~~y~~~l~~~~~~l~~~~L~~L 173 (413)
T 4hpq_C 129 SSHILDSKLNEIPT---IRKQVENITRQYQTMLAKVQSQLVESRMKGL 173 (413)
T ss_dssp TTTHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhchh---hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 56667778877611 2455666777777655555433323444433
No 34
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=27.34 E-value=2.3e+02 Score=31.01 Aligned_cols=59 Identities=7% Similarity=-0.058 Sum_probs=32.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCccchhh-hcHHHHHHHHHHHH
Q 005376 578 GFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLR-LFTIVRDFFIMLDK 640 (699)
Q Consensus 578 ~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YFged~~k~e~~~-fF~iv~dFl~~l~k 640 (699)
.|......-+...+..+..+.+.++++..-|.+-.. +...++.+. |...+.+|-.....
T Consensus 335 ~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~yFGEd~~----~~~~~~fF~~~~~F~~~f~~A~~e 394 (483)
T 2j1d_G 335 QFITVASFSFSDVEDLLAEAKDLFTKAVKHFGEEAG----KIQPDEFFGIFDQFLQAVSEAKQE 394 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTT----SCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666666777777777766643221 223445443 33445556555443
No 35
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=26.28 E-value=4.4e+02 Score=26.27 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhccC
Q 005376 630 IVRDFFIMLDKACKQVKDAPKKSTKSLKKEGS 661 (699)
Q Consensus 630 iv~dFl~~l~ka~kEv~~~~kr~~k~~kke~~ 661 (699)
.=++|...|++++.|+++......|.+||-+.
T Consensus 125 ~~K~~~~~~k~~r~elkk~~~~~~k~qkK~rk 156 (253)
T 2d1l_A 125 LDKDHAKEYKKARQEIKKKSSDTLKLQKKAKK 156 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Confidence 44678899999999998887776665555443
No 36
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=25.66 E-value=2.9e+02 Score=22.91 Aligned_cols=104 Identities=13% Similarity=0.059 Sum_probs=46.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcchhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhcccccCCCC
Q 005376 544 DADSLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNA---EGDIMWLLEEEKRIMSLVKSTGDYFHGNAG 620 (699)
Q Consensus 544 d~d~L~~~v~~L~~~l~~~~~~l~~~~~~~~~~~~F~~~m~~Fl~~A---e~~i~~L~e~~~~~~~~~k~l~~YFged~~ 620 (699)
++.....++..|...|..++..+.. ......+ .+.+..-+... +.+|.........+......++.- +...
T Consensus 3 ~L~~F~~~l~el~~WL~~~e~~l~~-~~~~~~d---~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~--~~~~ 76 (119)
T 3uun_A 3 NLDRYQTALEEVLSWLLSAEDTLQA-QGEISND---VEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGT--GKLS 76 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HCSCCSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TCSC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCC---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCC
Confidence 3444455566666677666555532 1112222 22333333222 334444444444444444444321 1111
Q ss_pred ccchhhhcHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005376 621 KDEGLRLFTIVRDFFIMLDKACKQVKDAPKKST 653 (699)
Q Consensus 621 k~e~~~fF~iv~dFl~~l~ka~kEv~~~~kr~~ 653 (699)
.++...+=.-+.+.-..|+..+....+.+++.+
T Consensus 77 ~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~Le 109 (119)
T 3uun_A 77 EDEETEVQEQMNLLNSRWECLRVASMEKQSNLH 109 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122223334455566666666666666555543
No 37
>1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1
Probab=25.05 E-value=3.9e+02 Score=24.20 Aligned_cols=38 Identities=11% Similarity=0.232 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccCCCcchhhHHH
Q 005376 547 SLTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLK 584 (699)
Q Consensus 547 ~L~~~v~~L~~~l~~~~~~l~~~~~~~~~~~~F~~~m~ 584 (699)
.+..++..|...+..++.++.-.+..+++++.|=-.+.
T Consensus 14 ~vk~ei~~l~e~~~~vk~WI~l~IPkiEDGNNFGV~VQ 51 (140)
T 1avo_B 14 RLKPEIKDVIEQLNLVTTWLQLQIPRIEDGNNFGVAVQ 51 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCCSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcccCCCchhHHHH
Confidence 34455666777777777777777778888888854333
No 38
>2ets_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.25A {Staphylococcus aureus subsp} SCOP: a.24.26.1
Probab=24.84 E-value=3.7e+02 Score=23.98 Aligned_cols=44 Identities=11% Similarity=0.203 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccCCCcchhhHHHHHHHHHHHHHHHHHH
Q 005376 548 LTGTVSKLGHALLKTRDFLNTDMKNLGENSGFHETLKSFVQNAEGDIMWLLE 599 (699)
Q Consensus 548 L~~~v~~L~~~l~~~~~~l~~~~~~~~~~~~F~~~m~~Fl~~Ae~~i~~L~e 599 (699)
|..++.++......+++ .+.+-+|...++.|++.....+..+..
T Consensus 20 L~~~~~~~~~ry~~~ke--------~~~e~DFy~eVKPf~d~vd~~l~eW~~ 63 (128)
T 2ets_A 20 LIYEVNNMQQNFENVKS--------QQQDHDFYQTVKPYTEHIDSILNEIKL 63 (128)
T ss_dssp HHHHHHHHHHHHHHHHH--------HTCCCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--------cCCCCCccccccchHHHHHHHHHHHHH
Confidence 44444555555544442 233557999999999999988887765
No 39
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=24.81 E-value=3.3e+02 Score=23.37 Aligned_cols=33 Identities=12% Similarity=0.121 Sum_probs=16.5
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005376 576 NSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLV 608 (699)
Q Consensus 576 ~~~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~ 608 (699)
++...+.|...+.........+....+.+....
T Consensus 45 ~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~ 77 (127)
T 1ez3_A 45 DEKTKEELEELMSDIKKTANKVRSKLKSIEQSI 77 (127)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566555555555555544444444333
No 40
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=24.60 E-value=2.5e+02 Score=26.12 Aligned_cols=33 Identities=12% Similarity=0.120 Sum_probs=16.9
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005376 576 NSGFHETLKSFVQNAEGDIMWLLEEEKRIMSLV 608 (699)
Q Consensus 576 ~~~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~ 608 (699)
++.....|...+.........+....+.+....
T Consensus 76 ~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~ 108 (180)
T 1s94_A 76 DDQMKEELEELMTDIKRTANKVRGKLKTIELNI 108 (180)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666555555555555444444
No 41
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=22.87 E-value=2.5e+02 Score=28.56 Aligned_cols=29 Identities=17% Similarity=0.092 Sum_probs=21.4
Q ss_pred hhcHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 005376 626 RLFTIVRDFFIMLDKACKQVKDAPKKSTK 654 (699)
Q Consensus 626 ~fF~iv~dFl~~l~ka~kEv~~~~kr~~k 654 (699)
.|..-+..+....++.+|++++.+.|++|
T Consensus 98 ~~~~~L~~~~~e~ek~RK~~Ke~w~r~eK 126 (279)
T 3qwe_A 98 DYYQPLAAKRTEIEKWRKEFKEQWMKEQK 126 (279)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777888888888888877765
No 42
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=22.75 E-value=2.8e+02 Score=22.13 Aligned_cols=54 Identities=6% Similarity=-0.057 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccCCCCccchhhhcHHHHHHHHHHHHHHHHHHhh
Q 005376 591 EGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKACKQVKDA 648 (699)
Q Consensus 591 e~~i~~L~e~~~~~~~~~k~l~~YFged~~k~e~~~fF~iv~dFl~~l~ka~kEv~~~ 648 (699)
......|.....++...+..+.....| .....|...+.++...+.+....+.+.
T Consensus 22 ~~~~~~i~~~l~~L~~~~~~L~~~W~G----~a~~af~~~~~~~~~~~~~~~~~L~~i 75 (93)
T 4ioe_A 22 KNAAGEAQSQINRLEGDINSLEGQWAG----ATQAKFRGEFIQSKQAMQQYIPILEGI 75 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCc----hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444455555555555433322 223445554444444444444444333
No 43
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=22.53 E-value=4.4e+02 Score=27.30 Aligned_cols=10 Identities=20% Similarity=0.491 Sum_probs=5.5
Q ss_pred HHHHHHHHHH
Q 005376 471 LLHFVVQEII 480 (699)
Q Consensus 471 LLh~lv~~i~ 480 (699)
||+.|+..++
T Consensus 181 ll~~lld~iv 190 (363)
T 2iub_A 181 LLYSLIDALV 190 (363)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 44
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=22.05 E-value=86 Score=22.52 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhh
Q 005376 633 DFFIMLDKACKQVKDAPKKSTKSLKK 658 (699)
Q Consensus 633 dFl~~l~ka~kEv~~~~kr~~k~~kk 658 (699)
+.+..++++++||.+.+++.++-+++
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkK 31 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKK 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788899999998888877655444
No 45
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=21.91 E-value=3.2e+02 Score=22.13 Aligned_cols=21 Identities=10% Similarity=0.132 Sum_probs=12.7
Q ss_pred cchhhHHHHHHHHHHHHHHHH
Q 005376 577 SGFHETLKSFVQNAEGDIMWL 597 (699)
Q Consensus 577 ~~F~~~m~~Fl~~Ae~~i~~L 597 (699)
+.|...+..|-..+..-+..|
T Consensus 51 ~aF~~~~~~~~~~~~~~~~~L 71 (98)
T 3gwk_C 51 DSFEAQFNELSPKITEFAQLL 71 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 568777777766555433333
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=21.52 E-value=2.9e+02 Score=30.43 Aligned_cols=41 Identities=17% Similarity=0.043 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC
Q 005376 580 HETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAG 620 (699)
Q Consensus 580 ~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YFged~~ 620 (699)
.+.|+..++..+.++..+.++...+.+..+++.+-+.++..
T Consensus 546 ~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~ 586 (597)
T 3oja_B 546 NIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPD 586 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 34677777888888888888777777788887777766654
No 47
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=21.15 E-value=5.2e+02 Score=25.50 Aligned_cols=36 Identities=11% Similarity=0.017 Sum_probs=21.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005376 578 GFHETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGD 613 (699)
Q Consensus 578 ~F~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~ 613 (699)
.+.+....++.+...++.++.+......+....+.+
T Consensus 230 ~~~~~~~~~l~Dv~dh~~~~~e~~~~~re~l~~l~d 265 (280)
T 4egw_A 230 ITTKEDRENFEDLYYDTLQLIDMSATYREVLTSMMD 265 (280)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777666666655554444444443
No 48
>2hh6_A BH3980 protein; 10176605, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI, unknown; 2.04A {Bacillus halodurans} SCOP: a.69.4.1
Probab=20.63 E-value=1.3e+02 Score=26.40 Aligned_cols=49 Identities=12% Similarity=0.056 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccCCCCccchhhhcHHHHHHHHHHHHH
Q 005376 590 AEGDIMWLLEEEKRIMSLVKSTGDYFHGNAGKDEGLRLFTIVRDFFIMLDKA 641 (699)
Q Consensus 590 Ae~~i~~L~e~~~~~~~~~k~l~~YFged~~k~e~~~fF~iv~dFl~~l~ka 641 (699)
.+.++..|-++++.+.+.+..-+-+|+|...-.+..+ ++.+-+..|..+
T Consensus 21 ~~aR~k~LP~dY~~ay~~i~~Yl~~~~~~~~g~~~~~---il~~lldLfEea 69 (113)
T 2hh6_A 21 MEARAKALPKEYHHAYKAIQKYMWTSGGPTDWQDTKR---IFGGILDLFEEG 69 (113)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHSSTTSBCSHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHccCCCCchHHHH---HHHHHHHHHHHH
Confidence 3556777888888887777766667764543333344 444444444443
No 49
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=20.56 E-value=3.3e+02 Score=24.11 Aligned_cols=58 Identities=17% Similarity=-0.005 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHhhhhccccCCCcch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005376 552 VSKLGHALLKTRDFLNTDMKNLGENSGF---HETLKSFVQNAEGDIMWLLEEEKRIMSLVK 609 (699)
Q Consensus 552 v~~L~~~l~~~~~~l~~~~~~~~~~~~F---~~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k 609 (699)
+.+-..+|.-++.-|+.+++....|... --+|-.=|...+.++..|+.+.+.+....+
T Consensus 14 FqKA~sDLdyiq~RLe~Ef~~~~Pd~A~e~NPv~Ll~~LsaIk~ry~~L~~q~~~iaaeQk 74 (123)
T 4aj5_K 14 FQKAESDLDYIQYRLEYEIKTNHPDSASEKNPVTLLKELSVIKSRYQTLYARFKPVAVEQK 74 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC-----CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHHhCCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443333211 114444455555666666665555554444
No 50
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.27 E-value=6.1e+02 Score=27.09 Aligned_cols=69 Identities=12% Similarity=0.072 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC--ccchhhhcHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005376 581 ETLKSFVQNAEGDIMWLLEEEKRIMSLVKSTGDYFHGNAG--KDEGLRLFTIVRDFFIMLDKACKQVKDAPKKST 653 (699)
Q Consensus 581 ~~m~~Fl~~Ae~~i~~L~e~~~~~~~~~k~l~~YFged~~--k~e~~~fF~iv~dFl~~l~ka~kEv~~~~kr~~ 653 (699)
..|..+++..+....+++.+..++....+.+ .+... +.+..+.=..+.++-..+.+|...++++-.+++
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (487)
T 3oja_A 410 QLLRAIVKRYEEMYVEQQSVQNNAIRDWDMY----QHKETQLAEENARLKKLNGEADLALASANATLQELVVREQ 480 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhhhhhh----hhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHH
Confidence 3456666666655555444443333333222 11111 123344555666666666666666666655543
No 51
>2qfa_C Inner centromere protein; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens}
Probab=20.16 E-value=1.9e+02 Score=21.23 Aligned_cols=30 Identities=23% Similarity=0.505 Sum_probs=22.6
Q ss_pred hhhHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 005376 579 FHETLKSFVQNAEG-DIMWLLEEEKRIMSLV 608 (699)
Q Consensus 579 F~~~m~~Fl~~Ae~-~i~~L~e~~~~~~~~~ 608 (699)
|-.++.+|+.+... ++.+|.+.++++...|
T Consensus 15 c~~Kl~eF~~~vdnk~mvWL~EIeeEA~RMF 45 (47)
T 2qfa_C 15 CDQKLMEFLCNMDNKDLVWLEEIQEEAERMF 45 (47)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHHHHh
Confidence 56688899988875 7778887777666655
Done!