Query 005378
Match_columns 699
No_of_seqs 165 out of 189
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 22:30:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005378.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005378hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09787 Golgin_A5: Golgin sub 100.0 1.1E-32 2.3E-37 309.2 38.2 376 269-667 106-511 (511)
2 KOG4677 Golgi integral membran 100.0 1.7E-28 3.7E-33 263.1 34.4 307 333-677 172-551 (554)
3 KOG0612 Rho-associated, coiled 99.6 1E-12 2.2E-17 155.4 30.0 316 239-586 534-883 (1317)
4 KOG0963 Transcription factor/C 99.3 2.3E-09 5E-14 121.2 28.4 156 301-457 193-355 (629)
5 TIGR02169 SMC_prok_A chromosom 98.9 3.8E-05 8.1E-10 93.6 45.0 7 666-672 614-620 (1164)
6 TIGR02169 SMC_prok_A chromosom 98.9 9.1E-05 2E-09 90.3 47.3 11 642-652 562-572 (1164)
7 KOG0161 Myosin class II heavy 98.9 5.5E-05 1.2E-09 96.3 45.6 313 267-581 1194-1540(1930)
8 TIGR02168 SMC_prok_B chromosom 98.9 6.1E-05 1.3E-09 91.4 44.3 58 518-576 966-1023(1179)
9 KOG0161 Myosin class II heavy 98.8 0.0001 2.2E-09 94.0 45.3 41 264-304 959-999 (1930)
10 PF08172 CASP_C: CASP C termin 98.8 8.5E-08 1.8E-12 99.9 14.4 49 630-678 195-243 (248)
11 PRK02224 chromosome segregatio 98.8 0.00058 1.3E-08 82.1 48.0 16 514-529 624-639 (880)
12 PRK02224 chromosome segregatio 98.7 0.00071 1.5E-08 81.3 47.4 17 562-578 669-685 (880)
13 PF07888 CALCOCO1: Calcium bin 98.7 0.00086 1.9E-08 76.8 45.1 75 508-586 383-457 (546)
14 KOG0612 Rho-associated, coiled 98.7 0.00044 9.6E-09 83.9 41.6 141 283-427 487-639 (1317)
15 COG1196 Smc Chromosome segrega 98.6 0.0014 3E-08 81.7 45.5 39 547-585 971-1009(1163)
16 PF09787 Golgin_A5: Golgin sub 98.6 4.5E-05 9.8E-10 87.0 28.9 140 341-481 107-249 (511)
17 PF10174 Cast: RIM-binding pro 98.6 0.0016 3.6E-08 77.7 42.6 72 508-587 292-363 (775)
18 KOG0971 Microtubule-associated 98.5 0.0053 1.2E-07 72.9 44.8 33 646-678 654-686 (1243)
19 TIGR00606 rad50 rad50. This fa 98.5 0.0021 4.5E-08 81.0 44.8 64 510-576 1028-1091(1311)
20 COG1196 Smc Chromosome segrega 98.5 0.0044 9.6E-08 77.3 47.0 38 544-581 458-495 (1163)
21 PF00261 Tropomyosin: Tropomyo 98.5 8.9E-05 1.9E-09 76.7 27.0 212 341-587 6-217 (237)
22 PF00038 Filament: Intermediat 98.4 0.002 4.2E-08 68.5 35.4 86 492-577 212-300 (312)
23 PF07888 CALCOCO1: Calcium bin 98.4 0.0043 9.4E-08 71.2 39.2 45 278-322 187-231 (546)
24 KOG0977 Nuclear envelope prote 98.4 0.0014 3.1E-08 75.0 35.3 265 303-580 55-369 (546)
25 PRK03918 chromosome segregatio 98.4 0.014 3.1E-07 70.1 45.5 28 450-477 402-429 (880)
26 KOG0977 Nuclear envelope prote 98.4 0.001 2.2E-08 76.3 33.5 320 234-581 39-384 (546)
27 PF12128 DUF3584: Protein of u 98.3 0.027 5.9E-07 70.7 47.3 28 507-534 508-535 (1201)
28 TIGR00606 rad50 rad50. This fa 98.3 0.01 2.2E-07 75.0 43.9 43 542-584 1050-1092(1311)
29 PF00261 Tropomyosin: Tropomyo 98.3 0.00056 1.2E-08 70.8 27.3 216 245-469 2-220 (237)
30 PF05701 WEMBL: Weak chloropla 98.3 0.015 3.2E-07 67.0 43.4 40 221-263 7-46 (522)
31 KOG4673 Transcription factor T 98.3 0.018 3.9E-07 67.0 44.4 13 150-162 237-249 (961)
32 PF10174 Cast: RIM-binding pro 98.2 0.029 6.3E-07 67.3 44.6 74 510-583 514-599 (775)
33 PRK04863 mukB cell division pr 98.2 0.022 4.7E-07 72.7 43.3 293 279-587 289-599 (1486)
34 KOG0976 Rho/Rac1-interacting s 98.2 0.029 6.3E-07 66.2 41.5 187 388-579 286-502 (1265)
35 PF12128 DUF3584: Protein of u 98.2 0.049 1.1E-06 68.6 47.4 40 541-580 818-857 (1201)
36 KOG4674 Uncharacterized conser 98.2 0.032 7E-07 71.3 43.5 164 305-469 799-988 (1822)
37 PF09726 Macoilin: Transmembra 98.1 0.016 3.5E-07 68.9 37.6 224 252-480 422-656 (697)
38 PRK03918 chromosome segregatio 98.1 0.051 1.1E-06 65.4 45.1 14 544-557 457-470 (880)
39 KOG0996 Structural maintenance 98.1 0.062 1.3E-06 66.0 41.1 162 388-572 442-603 (1293)
40 KOG4643 Uncharacterized coiled 98.1 0.061 1.3E-06 65.1 43.1 239 341-583 299-587 (1195)
41 PRK04863 mukB cell division pr 98.0 0.14 3E-06 65.7 45.8 41 341-381 374-414 (1486)
42 KOG0976 Rho/Rac1-interacting s 98.0 0.078 1.7E-06 62.9 44.1 31 450-480 281-311 (1265)
43 KOG4674 Uncharacterized conser 98.0 0.16 3.4E-06 65.4 47.0 274 308-587 175-502 (1822)
44 KOG1029 Endocytic adaptor prot 97.9 0.064 1.4E-06 63.4 36.2 139 423-573 449-598 (1118)
45 KOG4673 Transcription factor T 97.9 0.089 1.9E-06 61.5 41.5 45 435-479 714-758 (961)
46 PF09726 Macoilin: Transmembra 97.9 0.01 2.2E-07 70.5 30.6 94 309-407 423-516 (697)
47 PF00038 Filament: Intermediat 97.9 0.051 1.1E-06 57.8 35.5 21 509-529 261-281 (312)
48 PF15070 GOLGA2L5: Putative go 97.9 0.088 1.9E-06 62.0 36.5 29 551-579 284-312 (617)
49 PRK11637 AmiB activator; Provi 97.9 0.025 5.4E-07 63.3 31.0 85 281-369 45-129 (428)
50 PF05701 WEMBL: Weak chloropla 97.8 0.11 2.4E-06 60.0 46.1 138 431-584 280-424 (522)
51 KOG0994 Extracellular matrix g 97.7 0.22 4.8E-06 61.2 37.1 37 547-583 1711-1747(1758)
52 KOG0933 Structural maintenance 97.7 0.27 5.8E-06 59.9 38.5 119 283-408 684-809 (1174)
53 PF01576 Myosin_tail_1: Myosin 97.7 8.8E-06 1.9E-10 97.9 0.0 128 341-472 241-368 (859)
54 KOG4643 Uncharacterized coiled 97.7 0.29 6.4E-06 59.5 41.0 64 389-456 411-474 (1195)
55 PRK11637 AmiB activator; Provi 97.6 0.072 1.6E-06 59.7 30.1 31 342-372 95-125 (428)
56 PF15070 GOLGA2L5: Putative go 97.6 0.27 5.9E-06 58.0 43.0 132 252-397 1-133 (617)
57 PF12718 Tropomyosin_1: Tropom 97.6 0.016 3.5E-07 56.1 21.0 139 339-479 3-141 (143)
58 PHA02562 46 endonuclease subun 97.6 0.17 3.7E-06 57.9 32.1 59 345-404 215-273 (562)
59 KOG0250 DNA repair protein RAD 97.5 0.24 5.1E-06 60.9 33.6 27 436-462 362-388 (1074)
60 PF09755 DUF2046: Uncharacteri 97.5 0.087 1.9E-06 57.0 27.1 205 251-463 51-299 (310)
61 KOG0933 Structural maintenance 97.4 0.63 1.4E-05 56.9 35.6 33 628-660 1012-1044(1174)
62 PHA02562 46 endonuclease subun 97.4 0.2 4.4E-06 57.2 29.6 9 515-523 384-392 (562)
63 KOG0996 Structural maintenance 97.3 0.83 1.8E-05 56.7 42.7 46 542-587 545-590 (1293)
64 PF01576 Myosin_tail_1: Myosin 97.3 5.5E-05 1.2E-09 91.2 0.0 153 432-585 321-479 (859)
65 KOG0999 Microtubule-associated 97.3 0.52 1.1E-05 54.4 30.7 86 347-437 104-189 (772)
66 COG4942 Membrane-bound metallo 97.3 0.25 5.5E-06 55.6 28.2 88 283-374 38-125 (420)
67 PF12718 Tropomyosin_1: Tropom 97.3 0.052 1.1E-06 52.7 20.1 121 284-413 22-142 (143)
68 KOG0964 Structural maintenance 97.3 0.87 1.9E-05 55.6 38.8 53 351-404 266-318 (1200)
69 PF05557 MAD: Mitotic checkpoi 97.3 6.7E-05 1.5E-09 88.8 0.0 26 447-472 299-324 (722)
70 KOG0999 Microtubule-associated 97.2 0.31 6.6E-06 56.2 28.2 192 371-586 43-241 (772)
71 PF09730 BicD: Microtubule-ass 97.2 0.84 1.8E-05 54.7 41.1 163 420-583 274-463 (717)
72 KOG1029 Endocytic adaptor prot 97.2 0.98 2.1E-05 54.0 35.6 161 359-531 411-577 (1118)
73 PRK09039 hypothetical protein; 97.1 0.13 2.9E-06 56.4 24.0 121 277-402 47-167 (343)
74 PF06160 EzrA: Septation ring 97.1 0.99 2.2E-05 52.7 39.0 146 388-534 280-431 (560)
75 PRK11281 hypothetical protein; 97.1 1.6 3.4E-05 55.0 45.4 35 634-668 522-560 (1113)
76 COG4942 Membrane-bound metallo 97.0 0.86 1.9E-05 51.5 30.8 72 245-327 39-110 (420)
77 PF13514 AAA_27: AAA domain 97.0 1.3 2.8E-05 55.7 33.4 40 541-580 454-493 (1111)
78 COG1579 Zn-ribbon protein, pos 97.0 0.21 4.5E-06 52.5 22.2 130 272-404 17-149 (239)
79 KOG0971 Microtubule-associated 97.0 1.6 3.4E-05 53.1 47.7 38 345-382 320-357 (1243)
80 PF05667 DUF812: Protein of un 97.0 0.47 1E-05 55.8 27.5 135 433-584 395-529 (594)
81 KOG0964 Structural maintenance 96.9 1.9 4.2E-05 52.8 36.7 191 287-482 181-385 (1200)
82 KOG0980 Actin-binding protein 96.9 1.9 4E-05 52.4 42.2 103 345-473 412-514 (980)
83 PF05557 MAD: Mitotic checkpoi 96.9 0.00094 2E-08 79.3 4.6 43 312-355 258-300 (722)
84 KOG0250 DNA repair protein RAD 96.8 2.2 4.7E-05 52.9 45.1 60 510-569 703-764 (1074)
85 PF09755 DUF2046: Uncharacteri 96.8 1.1 2.4E-05 48.7 36.6 24 446-469 178-201 (310)
86 PF15619 Lebercilin: Ciliary p 96.7 0.6 1.3E-05 47.7 22.9 39 435-473 153-191 (194)
87 KOG0994 Extracellular matrix g 96.7 2.8 6E-05 52.2 38.3 33 279-311 1450-1482(1758)
88 KOG1003 Actin filament-coating 96.7 0.89 1.9E-05 46.5 24.2 179 342-583 3-181 (205)
89 TIGR02680 conserved hypothetic 96.7 1.5 3.3E-05 56.2 30.9 38 544-581 926-963 (1353)
90 PF05622 HOOK: HOOK protein; 96.6 0.00049 1.1E-08 81.6 0.0 78 302-380 337-414 (713)
91 PRK09039 hypothetical protein; 96.6 0.12 2.7E-06 56.7 18.4 40 347-386 134-173 (343)
92 PRK04778 septation ring format 96.6 2.2 4.8E-05 49.9 38.3 72 514-585 415-501 (569)
93 PF14662 CCDC155: Coiled-coil 96.6 1 2.3E-05 45.9 25.0 120 341-472 6-128 (193)
94 PRK01156 chromosome segregatio 96.6 3 6.5E-05 51.0 43.7 31 342-372 475-505 (895)
95 PRK01156 chromosome segregatio 96.5 3.5 7.6E-05 50.4 45.2 26 448-473 418-443 (895)
96 KOG0018 Structural maintenance 96.4 3.9 8.5E-05 50.7 34.4 40 492-531 859-898 (1141)
97 PF14915 CCDC144C: CCDC144C pr 96.4 1.8 4E-05 46.8 38.0 183 334-517 54-249 (305)
98 KOG0980 Actin-binding protein 96.4 3.6 7.8E-05 50.0 33.6 43 287-329 341-383 (980)
99 TIGR01843 type_I_hlyD type I s 96.4 1.4 3.1E-05 48.1 24.9 35 337-371 145-179 (423)
100 PF05483 SCP-1: Synaptonemal c 96.4 3.4 7.3E-05 49.1 46.4 225 252-479 223-518 (786)
101 PF14662 CCDC155: Coiled-coil 96.3 1.5 3.2E-05 44.8 27.7 120 354-478 64-190 (193)
102 PF09730 BicD: Microtubule-ass 96.3 4.1 8.9E-05 49.1 41.7 78 509-587 358-446 (717)
103 PF10473 CENP-F_leu_zip: Leuci 96.2 1.2 2.5E-05 43.6 20.4 99 291-394 4-102 (140)
104 TIGR03007 pepcterm_ChnLen poly 96.2 1.1 2.4E-05 50.9 23.3 42 363-405 253-294 (498)
105 KOG0995 Centromere-associated 96.1 3.9 8.5E-05 47.7 40.6 87 283-380 235-324 (581)
106 COG4372 Uncharacterized protei 96.1 3.4 7.3E-05 46.3 31.4 52 349-401 129-180 (499)
107 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.9 1.6 3.5E-05 41.5 19.8 110 344-461 18-127 (132)
108 COG1579 Zn-ribbon protein, pos 95.9 2.8 6E-05 44.3 22.9 49 366-415 91-139 (239)
109 TIGR02680 conserved hypothetic 95.8 9.2 0.0002 49.4 33.8 39 284-322 743-781 (1353)
110 PF14992 TMCO5: TMCO5 family 95.8 3.4 7.4E-05 44.6 23.1 41 364-405 11-51 (280)
111 KOG2129 Uncharacterized conser 95.7 3.2 7E-05 46.8 23.1 95 358-459 202-319 (552)
112 PF06818 Fez1: Fez1; InterPro 95.7 3.2 6.9E-05 42.9 22.3 154 270-427 8-172 (202)
113 KOG0995 Centromere-associated 95.7 6.2 0.00013 46.2 43.6 46 422-467 436-481 (581)
114 TIGR01005 eps_transp_fam exopo 95.6 3.5 7.6E-05 49.5 25.5 191 278-476 196-406 (754)
115 KOG1853 LIS1-interacting prote 95.6 3.4 7.4E-05 44.0 21.9 100 312-412 28-131 (333)
116 KOG0946 ER-Golgi vesicle-tethe 95.6 7.7 0.00017 47.1 31.6 18 246-263 620-637 (970)
117 PRK10929 putative mechanosensi 95.6 9.8 0.00021 48.2 49.4 28 449-476 282-309 (1109)
118 COG4372 Uncharacterized protei 95.6 5.1 0.00011 44.9 30.5 13 627-639 352-364 (499)
119 PF08317 Spc7: Spc7 kinetochor 95.6 1.3 2.9E-05 48.1 19.9 119 277-403 150-268 (325)
120 PRK11281 hypothetical protein; 95.5 11 0.00024 47.8 31.4 37 338-374 144-180 (1113)
121 PF08317 Spc7: Spc7 kinetochor 95.5 1.5 3.2E-05 47.8 19.8 46 338-383 218-263 (325)
122 PF15619 Lebercilin: Ciliary p 95.4 3.7 8E-05 42.0 25.3 18 456-473 167-184 (194)
123 PF13514 AAA_27: AAA domain 95.3 12 0.00026 47.2 40.7 33 447-479 802-834 (1111)
124 PF04849 HAP1_N: HAP1 N-termin 95.1 1.2 2.6E-05 48.4 17.5 120 252-374 171-300 (306)
125 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.1 2.9 6.4E-05 39.8 18.2 124 437-579 8-131 (132)
126 PF09728 Taxilin: Myosin-like 95.0 6.6 0.00014 42.9 42.0 67 454-528 203-269 (309)
127 PF05010 TACC: Transforming ac 95.0 5.4 0.00012 41.4 28.7 76 394-472 119-194 (207)
128 KOG0946 ER-Golgi vesicle-tethe 94.9 12 0.00027 45.4 26.8 35 547-581 905-939 (970)
129 PF08614 ATG16: Autophagy prot 94.9 0.21 4.6E-06 50.4 10.5 107 274-380 72-181 (194)
130 KOG1937 Uncharacterized conser 94.9 9.2 0.0002 43.7 24.5 67 510-583 359-426 (521)
131 TIGR01843 type_I_hlyD type I s 94.8 7.9 0.00017 42.4 25.5 10 460-469 253-262 (423)
132 PF05667 DUF812: Protein of un 94.8 12 0.00026 44.4 35.0 35 546-580 557-591 (594)
133 TIGR03017 EpsF chain length de 94.7 8.1 0.00017 43.2 23.3 122 277-406 172-302 (444)
134 TIGR03185 DNA_S_dndD DNA sulfu 94.6 13 0.00028 44.2 39.2 80 291-370 210-289 (650)
135 KOG4677 Golgi integral membran 94.6 11 0.00024 43.1 34.9 108 259-374 169-276 (554)
136 PF05010 TACC: Transforming ac 94.6 6.7 0.00014 40.7 28.1 151 250-412 4-162 (207)
137 PF13851 GAS: Growth-arrest sp 94.6 6.4 0.00014 40.4 23.8 103 280-383 31-133 (201)
138 PF14915 CCDC144C: CCDC144C pr 94.5 8.8 0.00019 41.8 33.1 36 366-402 139-174 (305)
139 TIGR01005 eps_transp_fam exopo 94.5 15 0.00032 44.3 32.5 31 557-587 373-403 (754)
140 COG3883 Uncharacterized protei 94.5 8.4 0.00018 41.4 25.2 86 345-430 129-216 (265)
141 KOG0963 Transcription factor/C 94.4 14 0.0003 43.8 38.3 45 633-678 575-619 (629)
142 smart00787 Spc7 Spc7 kinetocho 94.3 3.8 8.2E-05 44.8 18.9 119 277-403 145-263 (312)
143 TIGR03185 DNA_S_dndD DNA sulfu 94.2 16 0.00034 43.5 36.7 31 346-376 219-249 (650)
144 KOG0978 E3 ubiquitin ligase in 94.1 18 0.00039 43.7 31.2 157 341-506 459-618 (698)
145 PF05622 HOOK: HOOK protein; 94.0 0.015 3.2E-07 69.3 0.0 19 550-568 551-569 (713)
146 PF05911 DUF869: Plant protein 93.9 13 0.00028 45.5 24.0 125 341-466 587-714 (769)
147 PF10168 Nup88: Nuclear pore c 93.9 16 0.00035 44.3 24.9 80 492-575 635-714 (717)
148 PRK10884 SH3 domain-containing 93.8 0.87 1.9E-05 46.9 12.3 39 341-379 130-168 (206)
149 smart00787 Spc7 Spc7 kinetocho 93.8 4.4 9.6E-05 44.3 18.2 19 427-445 248-266 (312)
150 PF09789 DUF2353: Uncharacteri 93.7 13 0.00029 40.9 24.2 190 278-478 11-228 (319)
151 PF10212 TTKRSYEDQ: Predicted 93.6 18 0.00039 42.2 24.7 61 509-573 454-514 (518)
152 PF13851 GAS: Growth-arrest sp 93.5 10 0.00022 39.0 23.3 78 493-570 97-174 (201)
153 PF09728 Taxilin: Myosin-like 93.4 14 0.00031 40.3 36.4 44 437-480 214-257 (309)
154 PRK04778 septation ring format 93.4 20 0.00044 42.0 39.3 53 518-571 449-501 (569)
155 PRK10246 exonuclease subunit S 93.4 29 0.00063 43.8 42.7 29 542-570 825-853 (1047)
156 PF08614 ATG16: Autophagy prot 93.3 0.45 9.8E-06 48.0 9.1 96 491-587 76-171 (194)
157 TIGR03007 pepcterm_ChnLen poly 93.0 20 0.00043 40.9 29.8 33 555-587 350-382 (498)
158 COG0419 SbcC ATPase involved i 93.0 30 0.00064 42.9 48.4 6 664-669 775-780 (908)
159 PF04156 IncA: IncA protein; 92.9 7.5 0.00016 38.6 17.1 36 439-474 151-186 (191)
160 PF04156 IncA: IncA protein; 92.8 6.8 0.00015 38.9 16.6 36 285-320 83-118 (191)
161 PRK10929 putative mechanosensi 92.7 37 0.0008 43.3 37.8 13 666-678 568-580 (1109)
162 KOG0018 Structural maintenance 92.7 35 0.00076 42.9 36.7 54 333-386 231-284 (1141)
163 PF12325 TMF_TATA_bd: TATA ele 92.3 4.8 0.0001 38.3 14.0 93 302-403 21-113 (120)
164 PF11559 ADIP: Afadin- and alp 92.3 4.5 9.7E-05 39.1 14.2 80 273-352 70-149 (151)
165 PF07111 HCR: Alpha helical co 92.1 34 0.00074 41.3 39.8 41 422-462 511-551 (739)
166 PRK10884 SH3 domain-containing 92.0 2.6 5.7E-05 43.5 12.8 44 357-401 125-168 (206)
167 PF06705 SF-assemblin: SF-asse 92.0 18 0.00039 37.9 32.5 28 419-446 115-142 (247)
168 PF09304 Cortex-I_coil: Cortex 91.6 10 0.00023 35.5 14.8 54 278-331 25-78 (107)
169 KOG1003 Actin filament-coating 91.4 19 0.00042 37.1 26.4 32 289-320 10-41 (205)
170 PF12325 TMF_TATA_bd: TATA ele 91.1 14 0.0003 35.2 15.6 92 286-378 19-110 (120)
171 PLN03188 kinesin-12 family pro 91.1 56 0.0012 42.0 36.2 141 436-586 1083-1244(1320)
172 KOG4593 Mitotic checkpoint pro 90.9 44 0.00094 40.3 39.5 64 237-300 158-221 (716)
173 KOG0962 DNA repair protein RAD 90.9 60 0.0013 41.8 38.3 58 637-694 1202-1263(1294)
174 PF09304 Cortex-I_coil: Cortex 90.9 14 0.00031 34.7 15.0 37 390-430 62-98 (107)
175 PF05483 SCP-1: Synaptonemal c 90.8 44 0.00096 40.3 44.8 74 510-583 534-631 (786)
176 COG0419 SbcC ATPase involved i 90.8 51 0.0011 40.9 48.7 14 247-260 325-338 (908)
177 PRK10246 exonuclease subunit S 90.0 64 0.0014 40.8 37.2 10 463-472 780-789 (1047)
178 TIGR01010 BexC_CtrB_KpsE polys 90.0 34 0.00073 37.6 22.1 35 556-590 274-308 (362)
179 PF11932 DUF3450: Protein of u 89.7 29 0.00062 36.4 18.2 21 278-298 37-57 (251)
180 KOG4360 Uncharacterized coiled 89.2 51 0.0011 38.5 20.6 133 308-441 163-298 (596)
181 PF04849 HAP1_N: HAP1 N-termin 89.2 39 0.00084 37.2 23.3 26 307-332 163-188 (306)
182 PF05911 DUF869: Plant protein 89.1 65 0.0014 39.6 29.8 51 352-403 115-165 (769)
183 PRK15178 Vi polysaccharide exp 89.1 48 0.001 38.1 22.3 80 514-594 290-378 (434)
184 PF10473 CENP-F_leu_zip: Leuci 88.9 25 0.00054 34.5 19.5 40 347-386 21-60 (140)
185 PF05335 DUF745: Protein of un 88.8 30 0.00066 35.4 17.4 65 337-402 61-125 (188)
186 PF11559 ADIP: Afadin- and alp 88.6 20 0.00044 34.6 15.0 25 390-414 98-122 (151)
187 PF10498 IFT57: Intra-flagella 88.4 18 0.0004 40.4 16.3 52 286-337 216-267 (359)
188 COG2433 Uncharacterized conser 88.2 8.6 0.00019 45.4 14.0 87 282-376 421-507 (652)
189 COG1340 Uncharacterized archae 88.2 44 0.00096 36.5 34.1 43 280-322 17-59 (294)
190 PLN02939 transferase, transfer 88.1 84 0.0018 39.6 26.9 165 388-568 228-398 (977)
191 PF06818 Fez1: Fez1; InterPro 88.0 36 0.00079 35.3 22.0 40 433-472 67-106 (202)
192 KOG4807 F-actin binding protei 87.8 55 0.0012 37.2 25.9 86 448-533 430-535 (593)
193 KOG4809 Rab6 GTPase-interactin 87.6 66 0.0014 37.9 31.4 87 317-411 312-398 (654)
194 PF07111 HCR: Alpha helical co 87.6 75 0.0016 38.5 46.3 30 341-370 240-269 (739)
195 KOG4807 F-actin binding protei 87.5 57 0.0012 37.0 27.6 42 308-349 349-391 (593)
196 PF10481 CENP-F_N: Cenp-F N-te 87.2 42 0.00091 36.4 17.2 58 537-594 72-129 (307)
197 PF04111 APG6: Autophagy prote 87.2 8.2 0.00018 42.2 12.6 118 458-585 14-131 (314)
198 PF10481 CENP-F_N: Cenp-F N-te 87.1 25 0.00055 38.0 15.6 75 391-469 37-111 (307)
199 KOG4593 Mitotic checkpoint pro 87.0 80 0.0017 38.2 42.0 19 541-559 379-397 (716)
200 PF12240 Angiomotin_C: Angiomo 86.9 42 0.00091 34.9 17.3 86 312-414 4-98 (205)
201 PF10168 Nup88: Nuclear pore c 86.8 85 0.0018 38.3 22.7 26 305-330 566-591 (717)
202 PF15397 DUF4618: Domain of un 86.6 50 0.0011 35.5 27.8 62 350-412 81-146 (258)
203 PLN02939 transferase, transfer 86.6 1E+02 0.0022 39.0 27.0 105 286-390 166-283 (977)
204 KOG0982 Centrosomal protein Nu 86.4 68 0.0015 36.8 22.0 67 233-299 264-334 (502)
205 PRK10361 DNA recombination pro 86.4 73 0.0016 37.1 24.9 85 388-480 76-160 (475)
206 PF10498 IFT57: Intra-flagella 86.3 27 0.00058 39.1 16.1 45 343-387 220-264 (359)
207 PF06120 Phage_HK97_TLTM: Tail 86.2 29 0.00063 38.0 16.0 57 242-304 46-102 (301)
208 COG4477 EzrA Negative regulato 85.9 80 0.0017 37.2 31.4 252 279-557 251-524 (570)
209 PF08826 DMPK_coil: DMPK coile 85.9 8 0.00017 32.8 9.1 60 255-325 1-60 (61)
210 COG2433 Uncharacterized conser 85.8 24 0.00051 41.9 15.8 93 351-459 416-508 (652)
211 PF15254 CCDC14: Coiled-coil d 85.5 93 0.002 38.2 20.5 44 15-58 12-59 (861)
212 KOG0249 LAR-interacting protei 85.3 99 0.0021 37.7 21.8 40 353-392 94-133 (916)
213 PF05384 DegS: Sensor protein 85.1 44 0.00095 33.4 18.6 120 278-399 29-153 (159)
214 PF15450 DUF4631: Domain of un 84.8 88 0.0019 36.7 38.8 121 274-404 169-290 (531)
215 PF06160 EzrA: Septation ring 84.4 94 0.002 36.7 41.2 84 491-575 322-408 (560)
216 PF15450 DUF4631: Domain of un 84.2 94 0.002 36.5 43.1 92 306-398 101-212 (531)
217 PF15035 Rootletin: Ciliary ro 84.0 53 0.0011 33.5 16.3 37 420-456 4-40 (182)
218 KOG0962 DNA repair protein RAD 83.9 1.5E+02 0.0032 38.6 40.1 50 429-478 882-931 (1294)
219 PF04111 APG6: Autophagy prote 83.7 24 0.00053 38.6 14.1 26 351-376 51-76 (314)
220 PF03148 Tektin: Tektin family 82.2 93 0.002 35.0 36.9 51 277-327 44-94 (384)
221 PF14197 Cep57_CLD_2: Centroso 81.9 18 0.0004 31.2 9.9 65 294-362 2-66 (69)
222 PF10205 KLRAQ: Predicted coil 81.3 27 0.00059 32.6 11.3 69 515-591 3-71 (102)
223 PF06785 UPF0242: Uncharacteri 81.1 59 0.0013 36.3 15.5 18 270-287 83-100 (401)
224 PF15035 Rootletin: Ciliary ro 81.0 68 0.0015 32.7 18.6 54 351-405 75-128 (182)
225 PF09486 HrpB7: Bacterial type 81.0 58 0.0013 32.6 14.3 130 229-369 7-140 (158)
226 PRK10698 phage shock protein P 80.5 78 0.0017 33.0 23.6 88 312-400 53-148 (222)
227 COG1340 Uncharacterized archae 80.4 96 0.0021 34.0 33.9 37 543-579 218-254 (294)
228 KOG0992 Uncharacterized conser 80.1 1.3E+02 0.0028 35.4 32.3 44 536-579 471-514 (613)
229 PF15066 CAGE1: Cancer-associa 80.1 1.3E+02 0.0027 35.1 27.7 49 421-469 386-434 (527)
230 PF04582 Reo_sigmaC: Reovirus 79.8 2.6 5.6E-05 46.3 5.0 54 346-400 101-154 (326)
231 KOG4360 Uncharacterized coiled 79.3 91 0.002 36.6 16.9 52 237-288 159-214 (596)
232 KOG0249 LAR-interacting protei 79.1 1.6E+02 0.0036 36.0 21.9 45 347-392 213-257 (916)
233 PLN03188 kinesin-12 family pro 78.8 2.1E+02 0.0047 37.1 23.8 19 233-251 1050-1068(1320)
234 KOG1853 LIS1-interacting prote 78.3 1E+02 0.0023 33.2 22.9 21 412-432 106-126 (333)
235 TIGR02977 phageshock_pspA phag 77.9 90 0.0019 32.2 23.0 32 314-345 55-86 (219)
236 KOG0804 Cytoplasmic Zn-finger 77.8 1E+02 0.0022 35.7 16.6 54 350-404 339-393 (493)
237 PF06008 Laminin_I: Laminin Do 77.8 98 0.0021 32.6 27.8 141 252-402 49-201 (264)
238 KOG2129 Uncharacterized conser 77.8 1.4E+02 0.003 34.4 27.7 33 490-525 254-286 (552)
239 PF12777 MT: Microtubule-bindi 77.5 1.2E+02 0.0026 33.5 23.4 17 312-328 16-32 (344)
240 PF10267 Tmemb_cc2: Predicted 77.3 1.3E+02 0.0027 34.4 17.2 14 285-298 221-234 (395)
241 PF07889 DUF1664: Protein of u 77.2 64 0.0014 31.2 12.9 84 307-398 39-122 (126)
242 PF00769 ERM: Ezrin/radixin/mo 76.9 1.1E+02 0.0023 32.5 17.8 26 446-471 103-128 (246)
243 PF15066 CAGE1: Cancer-associa 76.9 1.5E+02 0.0033 34.4 26.2 22 161-182 195-216 (527)
244 KOG4403 Cell surface glycoprot 76.8 1.5E+02 0.0033 34.3 21.0 105 461-565 310-426 (575)
245 PRK09343 prefoldin subunit bet 76.3 68 0.0015 30.4 12.8 39 341-379 76-114 (121)
246 PF06785 UPF0242: Uncharacteri 76.0 1.4E+02 0.003 33.5 21.1 102 344-467 121-222 (401)
247 PF15294 Leu_zip: Leucine zipp 76.0 1.1E+02 0.0025 33.2 15.7 128 281-414 130-260 (278)
248 PF15254 CCDC14: Coiled-coil d 75.9 2.1E+02 0.0045 35.4 35.6 31 333-363 384-414 (861)
249 PF04012 PspA_IM30: PspA/IM30 74.8 1E+02 0.0022 31.4 21.0 58 426-483 24-81 (221)
250 COG3206 GumC Uncharacterized p 74.5 1.6E+02 0.0035 33.5 24.4 49 359-408 287-335 (458)
251 COG3883 Uncharacterized protei 74.4 1.3E+02 0.0029 32.5 27.6 23 451-473 188-210 (265)
252 PF14992 TMCO5: TMCO5 family 73.8 1.4E+02 0.0031 32.5 16.4 25 421-445 73-97 (280)
253 PF04871 Uso1_p115_C: Uso1 / p 73.6 91 0.002 30.2 14.7 28 341-368 82-109 (136)
254 TIGR01000 bacteriocin_acc bact 73.4 1.7E+02 0.0037 33.3 25.5 16 282-297 103-118 (457)
255 KOG0804 Cytoplasmic Zn-finger 73.3 1.3E+02 0.0029 34.8 16.0 48 284-331 355-402 (493)
256 PF07106 TBPIP: Tat binding pr 73.1 18 0.00038 35.7 8.4 25 347-371 113-137 (169)
257 KOG0288 WD40 repeat protein Ti 73.0 1.7E+02 0.0036 33.7 16.5 42 341-382 32-73 (459)
258 PF07106 TBPIP: Tat binding pr 72.2 40 0.00088 33.2 10.7 22 335-356 115-136 (169)
259 PF00769 ERM: Ezrin/radixin/mo 71.7 1.4E+02 0.0031 31.6 17.9 54 347-401 37-90 (246)
260 PF14197 Cep57_CLD_2: Centroso 71.6 46 0.001 28.8 9.5 42 341-382 3-44 (69)
261 PF07889 DUF1664: Protein of u 71.4 65 0.0014 31.1 11.4 15 308-322 86-100 (126)
262 PRK15178 Vi polysaccharide exp 71.0 1.1E+02 0.0024 35.2 15.1 52 312-367 287-338 (434)
263 PF08826 DMPK_coil: DMPK coile 70.9 64 0.0014 27.5 9.9 58 398-466 2-59 (61)
264 PF00901 Orbi_VP5: Orbivirus o 70.8 2.2E+02 0.0048 33.4 20.3 80 341-423 138-217 (508)
265 KOG0978 E3 ubiquitin ligase in 70.7 2.6E+02 0.0056 34.2 43.0 68 519-587 540-607 (698)
266 PF04012 PspA_IM30: PspA/IM30 70.7 1.3E+02 0.0028 30.7 27.2 75 312-386 52-127 (221)
267 PRK10361 DNA recombination pro 70.4 2.2E+02 0.0048 33.3 24.1 26 562-587 382-407 (475)
268 PF02403 Seryl_tRNA_N: Seryl-t 70.1 44 0.00096 30.3 9.7 71 307-378 32-102 (108)
269 PRK12704 phosphodiesterase; Pr 70.0 2.3E+02 0.005 33.4 23.4 9 643-651 386-394 (520)
270 KOG1850 Myosin-like coiled-coi 70.0 1.9E+02 0.0041 32.3 36.8 34 446-479 229-262 (391)
271 PF03148 Tektin: Tektin family 69.9 1.9E+02 0.0042 32.5 28.4 45 254-298 115-159 (384)
272 PF10186 Atg14: UV radiation r 69.9 1.5E+02 0.0032 31.0 21.4 11 319-329 28-38 (302)
273 COG4026 Uncharacterized protei 69.7 43 0.00092 35.5 10.4 10 139-148 11-20 (290)
274 TIGR00618 sbcc exonuclease Sbc 69.1 3.2E+02 0.0069 34.6 44.7 22 278-299 182-203 (1042)
275 PF03915 AIP3: Actin interacti 69.1 2.2E+02 0.0048 32.8 19.0 116 343-467 199-320 (424)
276 TIGR00618 sbcc exonuclease Sbc 68.7 3.3E+02 0.0071 34.6 44.7 14 659-672 656-669 (1042)
277 TIGR03017 EpsF chain length de 68.5 2E+02 0.0044 32.2 28.6 33 555-587 337-369 (444)
278 PF06005 DUF904: Protein of un 68.3 82 0.0018 27.5 10.7 63 508-585 9-71 (72)
279 PF10146 zf-C4H2: Zinc finger- 68.2 1.7E+02 0.0036 31.0 15.3 24 363-386 45-68 (230)
280 PF05266 DUF724: Protein of un 68.1 1.4E+02 0.0031 30.5 13.8 60 306-369 126-185 (190)
281 PF15397 DUF4618: Domain of un 67.0 1.9E+02 0.0041 31.2 26.0 33 492-531 189-221 (258)
282 TIGR02231 conserved hypothetic 66.6 52 0.0011 38.1 11.6 27 287-313 75-101 (525)
283 PF02841 GBP_C: Guanylate-bind 66.2 1.9E+02 0.0042 31.1 15.9 114 249-363 182-297 (297)
284 KOG4603 TBP-1 interacting prot 66.1 54 0.0012 33.4 9.9 67 283-372 79-145 (201)
285 PF10805 DUF2730: Protein of u 65.7 54 0.0012 30.4 9.4 63 341-404 33-97 (106)
286 TIGR02977 phageshock_pspA phag 65.2 1.7E+02 0.0038 30.1 24.5 17 360-376 41-57 (219)
287 PRK09841 cryptic autophosphory 64.9 3.3E+02 0.0071 33.2 23.5 30 557-586 367-396 (726)
288 PF15175 SPATA24: Spermatogene 64.9 91 0.002 31.0 11.0 66 394-459 4-83 (153)
289 TIGR02971 heterocyst_DevB ABC 64.7 2E+02 0.0044 30.8 19.6 27 348-374 95-121 (327)
290 TIGR01010 BexC_CtrB_KpsE polys 64.6 2.2E+02 0.0049 31.2 17.3 29 278-306 172-200 (362)
291 COG1382 GimC Prefoldin, chaper 64.4 1.4E+02 0.003 28.7 13.5 37 341-377 75-111 (119)
292 PRK09841 cryptic autophosphory 64.2 2E+02 0.0044 34.9 16.3 35 271-305 262-296 (726)
293 PF10234 Cluap1: Clusterin-ass 63.9 2.2E+02 0.0048 30.9 17.0 73 408-480 145-217 (267)
294 PF06428 Sec2p: GDP/GTP exchan 62.9 12 0.00025 34.7 4.4 80 300-382 4-83 (100)
295 TIGR02338 gimC_beta prefoldin, 62.9 1.3E+02 0.0028 27.8 13.2 41 336-376 67-107 (110)
296 PF12795 MscS_porin: Mechanose 62.5 2E+02 0.0043 29.9 22.2 60 313-376 80-139 (240)
297 COG4717 Uncharacterized conser 62.4 4.1E+02 0.0089 33.5 31.2 291 271-581 502-809 (984)
298 TIGR00634 recN DNA repair prot 62.3 3.2E+02 0.0069 32.2 25.5 62 360-426 276-337 (563)
299 PF15290 Syntaphilin: Golgi-lo 62.2 2.4E+02 0.0052 31.0 14.4 25 266-290 62-86 (305)
300 PF10234 Cluap1: Clusterin-ass 61.9 96 0.0021 33.6 11.6 40 347-386 194-233 (267)
301 PRK11519 tyrosine kinase; Prov 61.5 3.7E+02 0.008 32.7 18.5 22 91-112 86-108 (719)
302 PF07139 DUF1387: Protein of u 60.5 2.7E+02 0.0059 30.8 15.7 24 172-195 72-95 (302)
303 COG1842 PspA Phage shock prote 60.1 2.3E+02 0.005 29.9 24.7 75 312-386 53-128 (225)
304 PF04799 Fzo_mitofusin: fzo-li 59.8 57 0.0012 33.1 8.9 65 249-327 103-167 (171)
305 PF10212 TTKRSYEDQ: Predicted 59.5 2.4E+02 0.0052 33.3 14.9 76 270-352 435-510 (518)
306 PRK11519 tyrosine kinase; Prov 59.1 4E+02 0.0088 32.4 18.2 31 275-305 266-296 (719)
307 TIGR00634 recN DNA repair prot 59.0 3.6E+02 0.0078 31.7 24.9 26 305-330 176-201 (563)
308 PRK15422 septal ring assembly 58.4 1.4E+02 0.003 26.8 10.3 71 507-585 8-78 (79)
309 KOG1103 Predicted coiled-coil 58.1 3.2E+02 0.007 30.9 23.9 38 492-529 248-285 (561)
310 PF08172 CASP_C: CASP C termin 57.3 1.6E+02 0.0034 31.5 12.3 34 286-319 2-35 (248)
311 PF13870 DUF4201: Domain of un 57.2 2.1E+02 0.0045 28.4 23.1 76 334-410 54-129 (177)
312 KOG0979 Structural maintenance 57.0 5.2E+02 0.011 33.0 34.9 49 284-332 637-685 (1072)
313 PF14073 Cep57_CLD: Centrosome 56.9 2.4E+02 0.0051 29.0 21.2 45 340-384 61-105 (178)
314 TIGR02449 conserved hypothetic 56.8 1.2E+02 0.0025 26.3 9.0 36 294-329 4-39 (65)
315 PF10226 DUF2216: Uncharacteri 56.7 2.5E+02 0.0054 29.2 12.8 79 286-378 58-136 (195)
316 PF08647 BRE1: BRE1 E3 ubiquit 56.5 1.6E+02 0.0034 26.8 12.6 15 308-322 28-42 (96)
317 PF13747 DUF4164: Domain of un 56.3 1.6E+02 0.0034 26.7 12.0 40 341-380 37-76 (89)
318 TIGR02449 conserved hypothetic 56.2 1E+02 0.0022 26.7 8.6 34 347-380 11-44 (65)
319 smart00806 AIP3 Actin interact 55.1 3.9E+02 0.0084 30.9 23.5 139 387-525 156-318 (426)
320 PRK06975 bifunctional uroporph 55.0 4.6E+02 0.01 31.7 18.9 59 347-408 382-440 (656)
321 TIGR01069 mutS2 MutS2 family p 55.0 2.7E+02 0.0058 34.4 15.3 46 354-399 540-585 (771)
322 COG4913 Uncharacterized protei 54.9 5.1E+02 0.011 32.2 28.1 63 505-567 778-851 (1104)
323 KOG4403 Cell surface glycoprot 54.1 4.1E+02 0.0089 30.9 16.0 25 432-456 404-428 (575)
324 PF12329 TMF_DNA_bd: TATA elem 54.1 1.2E+02 0.0025 26.6 8.8 55 252-313 9-63 (74)
325 PF09744 Jnk-SapK_ap_N: JNK_SA 53.7 2.4E+02 0.0053 28.2 16.0 55 309-363 55-109 (158)
326 COG3074 Uncharacterized protei 53.5 1.6E+02 0.0035 26.0 9.8 48 301-352 29-76 (79)
327 PF06632 XRCC4: DNA double-str 53.4 2.2E+02 0.0047 31.9 13.0 61 347-407 148-208 (342)
328 COG1566 EmrA Multidrug resista 52.8 3.2E+02 0.0069 30.8 14.2 23 303-325 104-126 (352)
329 KOG2077 JNK/SAPK-associated pr 52.2 1.9E+02 0.004 34.7 12.4 47 541-587 476-522 (832)
330 PF07058 Myosin_HC-like: Myosi 52.0 3.8E+02 0.0082 29.9 16.9 36 369-404 120-161 (351)
331 KOG0972 Huntingtin interacting 51.3 3.8E+02 0.0083 29.7 17.1 39 344-382 288-326 (384)
332 PF11802 CENP-K: Centromere-as 51.0 3.6E+02 0.0078 29.4 17.4 42 249-290 28-70 (268)
333 TIGR00998 8a0101 efflux pump m 50.9 3.4E+02 0.0073 29.0 17.5 20 308-327 77-96 (334)
334 PF09738 DUF2051: Double stran 50.9 2E+02 0.0043 31.7 12.0 25 503-527 276-300 (302)
335 PF12795 MscS_porin: Mechanose 50.8 3.1E+02 0.0067 28.5 22.9 27 304-330 38-64 (240)
336 KOG2991 Splicing regulator [RN 50.7 3.7E+02 0.008 29.3 23.9 65 507-579 233-297 (330)
337 PRK03598 putative efflux pump 50.3 3.4E+02 0.0074 29.3 13.8 7 319-325 122-128 (331)
338 PF14257 DUF4349: Domain of un 49.6 2.9E+02 0.0063 29.0 12.8 16 566-581 168-183 (262)
339 KOG0993 Rab5 GTPase effector R 49.6 4.7E+02 0.01 30.3 25.1 53 280-332 303-359 (542)
340 TIGR03319 YmdA_YtgF conserved 49.4 5E+02 0.011 30.6 24.7 8 658-665 393-400 (514)
341 PF02994 Transposase_22: L1 tr 49.1 50 0.0011 37.0 7.3 43 359-402 146-188 (370)
342 KOG1962 B-cell receptor-associ 48.9 1.9E+02 0.0041 30.5 10.9 40 347-386 169-208 (216)
343 COG1566 EmrA Multidrug resista 48.8 4.4E+02 0.0095 29.7 14.8 28 303-330 111-139 (352)
344 TIGR01069 mutS2 MutS2 family p 48.7 3.5E+02 0.0075 33.5 14.8 6 646-651 743-748 (771)
345 PF03915 AIP3: Actin interacti 48.5 4.9E+02 0.011 30.1 17.0 85 290-380 199-283 (424)
346 PF06705 SF-assemblin: SF-asse 47.4 3.6E+02 0.0078 28.3 34.1 149 359-533 94-242 (247)
347 PF12329 TMF_DNA_bd: TATA elem 47.2 2E+02 0.0042 25.2 10.2 29 358-386 34-62 (74)
348 PRK10476 multidrug resistance 47.2 4.1E+02 0.0089 28.9 17.2 22 308-329 83-104 (346)
349 COG5185 HEC1 Protein involved 46.7 5.6E+02 0.012 30.3 37.7 57 276-332 264-323 (622)
350 PF06428 Sec2p: GDP/GTP exchan 46.1 38 0.00083 31.4 4.9 79 319-402 2-81 (100)
351 PF04912 Dynamitin: Dynamitin 46.0 4.8E+02 0.01 29.3 20.9 238 309-551 92-387 (388)
352 KOG1962 B-cell receptor-associ 45.9 3.7E+02 0.0081 28.4 12.5 24 348-371 184-207 (216)
353 cd00632 Prefoldin_beta Prefold 45.5 2.4E+02 0.0052 25.7 13.8 28 278-305 8-35 (105)
354 TIGR03545 conserved hypothetic 45.4 2.6E+02 0.0056 33.3 12.7 16 466-481 190-205 (555)
355 TIGR02231 conserved hypothetic 44.8 1.8E+02 0.0039 33.8 11.3 15 360-374 134-148 (525)
356 COG1730 GIM5 Predicted prefold 44.6 3.3E+02 0.0071 27.0 14.0 10 311-320 27-36 (145)
357 PRK00106 hypothetical protein; 44.5 6.2E+02 0.013 30.2 24.3 10 516-525 300-309 (535)
358 COG1842 PspA Phage shock prote 44.5 4.1E+02 0.0088 28.1 22.7 60 343-403 92-151 (225)
359 COG4913 Uncharacterized protei 44.4 7.3E+02 0.016 31.0 29.8 23 447-469 777-799 (1104)
360 PF05700 BCAS2: Breast carcino 44.3 3.7E+02 0.008 27.9 12.3 70 288-364 134-203 (221)
361 KOG0979 Structural maintenance 43.9 8.2E+02 0.018 31.4 29.9 51 313-367 176-226 (1072)
362 PRK10803 tol-pal system protei 43.7 1.4E+02 0.0029 32.0 9.3 47 431-477 53-99 (263)
363 PF04102 SlyX: SlyX; InterPro 43.7 1.1E+02 0.0024 26.2 7.1 20 349-368 31-50 (69)
364 PF09753 Use1: Membrane fusion 43.3 58 0.0013 34.2 6.4 28 552-579 154-182 (251)
365 PF12808 Mto2_bdg: Micro-tubul 43.1 70 0.0015 26.5 5.4 43 393-435 4-46 (52)
366 COG3524 KpsE Capsule polysacch 43.0 5.2E+02 0.011 28.9 14.8 51 313-367 225-275 (372)
367 PF12126 DUF3583: Protein of u 42.9 5.1E+02 0.011 28.8 14.5 77 274-366 15-91 (324)
368 PRK15422 septal ring assembly 42.8 2.6E+02 0.0055 25.2 10.4 10 256-265 9-18 (79)
369 KOG0163 Myosin class VI heavy 42.6 6.5E+02 0.014 31.5 15.1 35 48-82 562-596 (1259)
370 PRK10803 tol-pal system protei 42.5 1.5E+02 0.0032 31.6 9.4 40 347-386 58-97 (263)
371 PF07099 DUF1361: Protein of u 42.4 46 0.001 33.2 5.2 49 627-675 107-162 (168)
372 PF15290 Syntaphilin: Golgi-lo 42.2 5.1E+02 0.011 28.6 14.1 12 252-263 65-76 (305)
373 PF07851 TMPIT: TMPIT-like pro 41.9 3.2E+02 0.0069 30.6 11.9 45 358-402 40-84 (330)
374 PF04304 DUF454: Protein of un 41.8 58 0.0013 27.5 5.1 47 623-669 22-69 (71)
375 PF10267 Tmemb_cc2: Predicted 41.8 5.9E+02 0.013 29.2 18.6 44 516-566 275-318 (395)
376 PF04728 LPP: Lipoprotein leuc 41.7 2.2E+02 0.0047 24.1 8.2 16 351-366 32-47 (56)
377 KOG3457 Sec61 protein transloc 41.5 20 0.00043 32.5 2.2 19 654-672 67-85 (88)
378 PRK00409 recombination and DNA 41.4 7.9E+02 0.017 30.5 17.1 24 125-148 253-276 (782)
379 KOG0163 Myosin class VI heavy 41.4 8.2E+02 0.018 30.7 19.9 20 278-297 829-848 (1259)
380 KOG2391 Vacuolar sorting prote 41.3 3.5E+02 0.0075 30.5 11.9 50 326-375 236-285 (365)
381 TIGR03794 NHPM_micro_HlyD NHPM 40.8 5.7E+02 0.012 28.7 20.5 23 455-477 229-251 (421)
382 PF10205 KLRAQ: Predicted coil 40.6 3.2E+02 0.0069 25.7 11.4 49 301-360 23-71 (102)
383 KOG4603 TBP-1 interacting prot 40.5 1.9E+02 0.0041 29.7 9.0 56 343-399 79-136 (201)
384 PF05278 PEARLI-4: Arabidopsis 40.5 5.2E+02 0.011 28.2 14.1 22 419-440 236-257 (269)
385 TIGR00414 serS seryl-tRNA synt 40.5 2.2E+02 0.0048 32.4 10.8 74 306-380 32-106 (418)
386 PRK00106 hypothetical protein; 40.2 7.1E+02 0.015 29.7 25.6 9 643-651 401-409 (535)
387 PLN02678 seryl-tRNA synthetase 40.1 2.2E+02 0.0048 32.9 10.9 73 307-380 36-108 (448)
388 PF06548 Kinesin-related: Kine 40.0 6.8E+02 0.015 29.4 21.1 142 254-411 326-480 (488)
389 PF12761 End3: Actin cytoskele 39.9 1.8E+02 0.004 30.2 9.1 33 345-377 162-194 (195)
390 PRK10476 multidrug resistance 39.9 5.3E+02 0.011 28.0 17.7 14 388-401 154-167 (346)
391 PF14988 DUF4515: Domain of un 39.8 4.5E+02 0.0098 27.3 27.4 30 303-332 46-75 (206)
392 PF04899 MbeD_MobD: MbeD/MobD 39.1 2.7E+02 0.0058 24.4 9.6 20 341-360 47-66 (70)
393 PF09731 Mitofilin: Mitochondr 39.1 7E+02 0.015 29.3 26.2 29 396-424 363-391 (582)
394 PRK03947 prefoldin subunit alp 39.1 3.5E+02 0.0075 25.7 13.6 30 347-376 98-127 (140)
395 KOG0288 WD40 repeat protein Ti 39.0 6.8E+02 0.015 29.1 17.9 22 420-441 99-120 (459)
396 PF06770 Arif-1: Actin-rearran 38.5 35 0.00077 35.2 3.8 29 646-674 164-192 (196)
397 KOG1899 LAR transmembrane tyro 38.4 8.3E+02 0.018 29.9 21.7 34 436-469 228-261 (861)
398 PF04102 SlyX: SlyX; InterPro 38.4 1.6E+02 0.0034 25.3 7.1 43 283-325 4-46 (69)
399 PF10046 BLOC1_2: Biogenesis o 38.2 3.1E+02 0.0068 25.0 13.9 82 284-366 15-96 (99)
400 PF06156 DUF972: Protein of un 38.0 1.4E+02 0.0029 28.1 7.2 46 541-586 10-55 (107)
401 PF10805 DUF2730: Protein of u 37.9 3.3E+02 0.0071 25.2 9.7 18 305-322 43-60 (106)
402 PRK09343 prefoldin subunit bet 37.8 3.6E+02 0.0078 25.5 13.4 44 436-479 4-47 (121)
403 TIGR03752 conj_TIGR03752 integ 37.2 4E+02 0.0086 31.3 12.1 42 345-386 61-102 (472)
404 PLN02320 seryl-tRNA synthetase 37.2 2.4E+02 0.0052 33.2 10.6 70 309-380 98-167 (502)
405 PRK04406 hypothetical protein; 37.1 2.8E+02 0.0062 24.4 8.7 12 309-320 30-41 (75)
406 PRK05431 seryl-tRNA synthetase 36.9 2.7E+02 0.0058 31.9 10.8 73 307-380 31-103 (425)
407 PF06120 Phage_HK97_TLTM: Tail 36.7 6.2E+02 0.014 28.0 17.5 48 276-323 59-107 (301)
408 PF14988 DUF4515: Domain of un 36.6 5.1E+02 0.011 26.9 26.5 27 388-414 80-106 (206)
409 PF01920 Prefoldin_2: Prefoldi 36.6 3E+02 0.0065 24.3 12.5 24 349-372 68-91 (106)
410 KOG3850 Predicted membrane pro 36.4 7.2E+02 0.016 28.6 15.5 102 400-521 263-371 (455)
411 PF05529 Bap31: B-cell recepto 36.4 2.1E+02 0.0046 28.6 9.0 35 549-583 157-191 (192)
412 KOG1899 LAR transmembrane tyro 36.3 8.9E+02 0.019 29.7 19.8 11 392-402 152-162 (861)
413 cd00632 Prefoldin_beta Prefold 36.1 3.4E+02 0.0073 24.7 12.9 16 351-366 71-86 (105)
414 COG3074 Uncharacterized protei 36.0 3.1E+02 0.0067 24.3 10.1 14 401-414 54-67 (79)
415 KOG2629 Peroxisomal membrane a 36.0 3.5E+02 0.0076 29.8 10.8 38 295-332 120-157 (300)
416 PF11180 DUF2968: Protein of u 36.0 5.2E+02 0.011 26.9 14.1 27 285-311 107-133 (192)
417 TIGR03794 NHPM_micro_HlyD NHPM 35.7 6.8E+02 0.015 28.1 21.0 23 448-470 229-251 (421)
418 PRK13169 DNA replication intia 35.2 1.6E+02 0.0035 27.9 7.2 46 541-586 10-55 (110)
419 PF15456 Uds1: Up-regulated Du 34.3 2.7E+02 0.0058 26.8 8.7 11 287-297 26-36 (124)
420 PF08232 Striatin: Striatin fa 34.3 1.3E+02 0.0028 29.1 6.7 44 286-329 28-71 (134)
421 PF14257 DUF4349: Domain of un 34.3 3.4E+02 0.0074 28.5 10.5 27 555-581 164-190 (262)
422 PF05791 Bacillus_HBL: Bacillu 34.2 4E+02 0.0086 26.9 10.5 23 333-355 153-175 (184)
423 KOG2264 Exostosin EXT1L [Signa 34.2 3E+02 0.0065 33.0 10.5 72 496-582 76-150 (907)
424 KOG0972 Huntingtin interacting 34.1 7E+02 0.015 27.8 17.1 44 278-321 215-258 (384)
425 PRK13729 conjugal transfer pil 33.9 1.4E+02 0.003 34.9 7.9 13 312-324 77-89 (475)
426 KOG2391 Vacuolar sorting prote 33.9 2E+02 0.0044 32.3 8.8 63 253-315 216-278 (365)
427 PF08232 Striatin: Striatin fa 33.8 2.8E+02 0.006 26.9 8.9 57 401-471 15-71 (134)
428 PF11365 DUF3166: Protein of u 33.4 1.6E+02 0.0035 27.4 6.7 88 285-374 3-93 (96)
429 COG0497 RecN ATPase involved i 33.3 9.3E+02 0.02 29.0 24.9 39 541-582 344-382 (557)
430 PRK13729 conjugal transfer pil 32.6 1.6E+02 0.0035 34.3 8.2 51 351-402 70-120 (475)
431 TIGR02894 DNA_bind_RsfA transc 32.5 2.8E+02 0.006 28.1 8.7 47 285-331 99-145 (161)
432 TIGR03495 phage_LysB phage lys 32.5 2.5E+02 0.0054 27.5 8.3 37 247-283 22-58 (135)
433 COG5185 HEC1 Protein involved 32.3 9.2E+02 0.02 28.6 37.1 40 627-668 558-597 (622)
434 PRK00409 recombination and DNA 32.2 1.1E+03 0.023 29.4 17.4 6 646-651 754-759 (782)
435 COG0172 SerS Seryl-tRNA synthe 32.0 3E+02 0.0066 31.8 10.1 77 305-381 30-106 (429)
436 PRK00295 hypothetical protein; 31.9 3.3E+02 0.0072 23.4 8.1 12 286-297 8-19 (68)
437 PRK00846 hypothetical protein; 31.9 3.8E+02 0.0081 24.0 8.8 12 309-320 32-43 (77)
438 PF04375 HemX: HemX; InterPro 31.7 7.8E+02 0.017 27.6 15.0 106 297-404 53-165 (372)
439 PF09744 Jnk-SapK_ap_N: JNK_SA 31.7 5.4E+02 0.012 25.8 14.2 68 308-382 47-114 (158)
440 KOG0982 Centrosomal protein Nu 31.6 9E+02 0.019 28.3 30.5 43 341-383 248-290 (502)
441 PF05266 DUF724: Protein of un 31.1 6E+02 0.013 26.1 15.1 17 343-359 131-147 (190)
442 PRK02793 phi X174 lysis protei 31.0 3E+02 0.0064 24.0 7.7 11 310-320 7-17 (72)
443 PF14282 FlxA: FlxA-like prote 30.8 3.2E+02 0.0069 25.3 8.4 27 556-582 47-73 (106)
444 COG4467 Regulator of replicati 30.7 1.7E+02 0.0037 27.8 6.5 45 541-585 10-54 (114)
445 PRK06975 bifunctional uroporph 30.4 7.2E+02 0.016 30.2 13.4 10 98-107 198-207 (656)
446 PF12761 End3: Actin cytoskele 30.1 2.3E+02 0.0049 29.5 7.9 28 446-473 167-194 (195)
447 PF08409 DUF1736: Domain of un 30.0 55 0.0012 29.2 3.1 24 650-673 21-44 (80)
448 PF04871 Uso1_p115_C: Uso1 / p 29.7 5.3E+02 0.011 25.0 15.0 31 367-398 80-110 (136)
449 PF12004 DUF3498: Domain of un 29.6 18 0.00039 42.1 0.0 33 341-373 431-463 (495)
450 PF07439 DUF1515: Protein of u 29.4 4.5E+02 0.0098 25.1 9.0 32 342-373 32-63 (112)
451 PF13094 CENP-Q: CENP-Q, a CEN 29.1 4.3E+02 0.0093 25.8 9.5 52 353-405 30-81 (160)
452 PF03962 Mnd1: Mnd1 family; I 29.1 6.3E+02 0.014 25.7 14.0 18 311-328 110-127 (188)
453 PF14739 DUF4472: Domain of un 29.0 5.1E+02 0.011 24.6 13.1 44 312-355 4-47 (108)
454 PF06716 DUF1201: Protein of u 28.9 71 0.0015 26.1 3.2 23 658-680 20-44 (54)
455 PF07989 Microtub_assoc: Micro 28.8 4.1E+02 0.0088 23.4 8.5 70 333-403 4-74 (75)
456 PF12004 DUF3498: Domain of un 28.7 19 0.00041 41.9 0.0 30 271-300 396-425 (495)
457 PRK08476 F0F1 ATP synthase sub 28.5 5.4E+02 0.012 24.8 14.7 19 541-559 120-138 (141)
458 KOG4460 Nuclear pore complex, 28.5 1.1E+03 0.024 28.4 22.0 118 432-555 588-718 (741)
459 PF09789 DUF2353: Uncharacteri 28.3 8.8E+02 0.019 27.1 29.7 43 540-582 273-315 (319)
460 COG3096 MukB Uncharacterized p 28.2 1.3E+03 0.028 29.1 35.0 266 244-522 348-663 (1480)
461 TIGR00998 8a0101 efflux pump m 28.1 7.6E+02 0.016 26.3 18.2 9 392-400 152-160 (334)
462 PF03196 DUF261: Protein of un 28.0 54 0.0012 32.1 2.9 36 659-694 17-71 (136)
463 PF02183 HALZ: Homeobox associ 27.9 2.5E+02 0.0054 22.5 6.1 15 317-331 4-18 (45)
464 KOG0239 Kinesin (KAR3 subfamil 27.6 1.2E+03 0.026 28.6 18.8 133 290-424 175-313 (670)
465 PF14389 Lzipper-MIP1: Leucine 27.6 4.6E+02 0.0099 23.6 9.1 28 305-332 9-36 (88)
466 PF14282 FlxA: FlxA-like prote 27.5 3.7E+02 0.008 24.9 8.2 25 305-329 52-76 (106)
467 PF04859 DUF641: Plant protein 27.4 1.7E+02 0.0037 28.5 6.2 54 295-366 78-131 (131)
468 PF05531 NPV_P10: Nucleopolyhe 27.1 2.9E+02 0.0062 24.7 6.9 28 303-330 10-37 (75)
469 PF05529 Bap31: B-cell recepto 27.0 5E+02 0.011 26.0 9.8 31 341-371 159-189 (192)
470 KOG4787 Uncharacterized conser 27.0 1.2E+03 0.026 28.4 20.5 54 446-500 459-512 (852)
471 PRK04325 hypothetical protein; 26.9 4.1E+02 0.0089 23.2 7.9 19 284-302 10-28 (74)
472 PF11172 DUF2959: Protein of u 26.5 7.7E+02 0.017 25.9 20.5 81 302-382 62-144 (201)
473 KOG3647 Predicted coiled-coil 26.5 9E+02 0.019 26.7 20.7 76 304-391 105-180 (338)
474 PF06657 Cep57_MT_bd: Centroso 26.5 3.6E+02 0.0079 23.9 7.6 28 539-566 50-77 (79)
475 PRK00736 hypothetical protein; 26.3 4.2E+02 0.009 22.8 7.8 13 285-297 7-19 (68)
476 PF12072 DUF3552: Domain of un 26.1 7.2E+02 0.016 25.4 22.6 149 275-437 49-197 (201)
477 PF06008 Laminin_I: Laminin Do 25.9 8E+02 0.017 25.9 29.7 211 246-479 19-239 (264)
478 PRK10636 putative ABC transpor 25.9 3.8E+02 0.0083 32.1 10.1 86 500-586 553-638 (638)
479 TIGR03545 conserved hypothetic 25.9 1.1E+03 0.025 28.1 13.8 98 272-369 164-270 (555)
480 KOG4571 Activating transcripti 25.7 3.5E+02 0.0075 29.8 8.7 60 320-382 228-287 (294)
481 PF04949 Transcrip_act: Transc 25.6 7E+02 0.015 25.1 17.0 117 282-406 30-146 (159)
482 COG4477 EzrA Negative regulato 25.6 1.2E+03 0.027 27.9 38.9 319 240-580 100-437 (570)
483 PRK03947 prefoldin subunit alp 25.6 5.9E+02 0.013 24.2 14.0 94 282-379 5-137 (140)
484 PF05663 DUF809: Protein of un 25.5 61 0.0013 30.3 2.7 18 651-668 23-40 (138)
485 COG3096 MukB Uncharacterized p 25.5 1.4E+03 0.031 28.7 38.1 318 240-586 276-597 (1480)
486 TIGR02559 HrpB7 type III secre 25.3 7.2E+02 0.016 25.1 14.2 134 228-372 6-143 (158)
487 PF12711 Kinesin-relat_1: Kine 25.3 3.8E+02 0.0082 24.5 7.6 60 515-576 22-86 (86)
488 KOG2751 Beclin-like protein [S 24.7 1.2E+03 0.025 27.3 15.3 124 276-413 143-266 (447)
489 COG3524 KpsE Capsule polysacch 24.7 1E+03 0.022 26.7 15.7 127 444-592 177-320 (372)
490 PF08647 BRE1: BRE1 E3 ubiquit 24.6 5.3E+02 0.012 23.4 13.5 95 281-386 1-95 (96)
491 PF07439 DUF1515: Protein of u 24.4 5.6E+02 0.012 24.5 8.7 63 308-370 5-67 (112)
492 PRK11546 zraP zinc resistance 24.3 6.5E+02 0.014 25.0 9.6 63 317-379 49-118 (143)
493 PRK11546 zraP zinc resistance 24.2 6.7E+02 0.015 24.9 9.7 68 343-411 47-114 (143)
494 PF01920 Prefoldin_2: Prefoldi 24.0 5E+02 0.011 22.9 11.9 82 300-382 1-101 (106)
495 PLN02678 seryl-tRNA synthetase 23.9 5.2E+02 0.011 30.0 10.3 76 496-576 33-108 (448)
496 KOG0860 Synaptobrevin/VAMP-lik 23.4 2.6E+02 0.0056 26.9 6.4 56 621-677 61-116 (116)
497 COG3206 GumC Uncharacterized p 23.4 1.1E+03 0.025 26.7 27.7 225 276-518 168-402 (458)
498 PF02185 HR1: Hr1 repeat; Int 23.3 4.6E+02 0.01 22.1 7.9 58 312-370 2-60 (70)
499 PF06657 Cep57_MT_bd: Centroso 23.1 5.3E+02 0.012 22.8 8.1 64 300-369 13-76 (79)
500 TIGR02894 DNA_bind_RsfA transc 23.1 6.9E+02 0.015 25.3 9.6 65 284-359 91-155 (161)
No 1
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=100.00 E-value=1.1e-32 Score=309.23 Aligned_cols=376 Identities=26% Similarity=0.342 Sum_probs=252.2
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHHHHHH----HHH---------H-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 269 SKEARLARVCAGLSSRLQEYKSENAQLEEL----LVA---------E-RELSRSYEARIKQLEQELSVYKSEVTKVESNL 334 (699)
Q Consensus 269 ~ke~qLa~~~aRLrK~~~ELkke~aqLEe~----l~e---------l-qek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~ 334 (699)
+...+++++..+|.+..+|++..+.++++. .+. + ....+.|+.++..|+.++.............|
T Consensus 106 sl~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~f 185 (511)
T PF09787_consen 106 SLSSELAVLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEF 185 (511)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHH
Confidence 345599999999999999999999999987 221 1 12336788888899999988888888888888
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-------hh---hHHHHHHHHHHHHHHHHH-HHH
Q 005378 335 AEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR-------EL---TETRMIQALREELASVER-RAE 403 (699)
Q Consensus 335 ~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~-------s~---~Eke~lqSLE~eLkslQ~-aLe 403 (699)
..+...++..+..|..+..++.. +..-.....+++...+.+.... .+ .+..++++++..+.+|+. .+.
T Consensus 186 l~rtl~~e~~~~~L~~~~~A~~~-~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~ 264 (511)
T PF09787_consen 186 LKRTLKKEIERQELEERPKALRH-YIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLE 264 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc
Confidence 89999999999999988885543 3334434444444433333333 22 367888888888888887 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccC-
Q 005378 404 EERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKK- 482 (699)
Q Consensus 404 ~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~qqk- 482 (699)
.....+..+ + -+..+..+...+-+-+..+++.+..-+..+.+++.++.. ..+.+++..+.+.........+
T Consensus 265 ~~~~~~~~~-~----el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~---~~~~~~~~~~~~~~~~~~~~~~e 336 (511)
T PF09787_consen 265 EGFDSSTNS-I----ELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEG---EQESFREQPQELSQQLEPELTTE 336 (511)
T ss_pred cccccccch-h----cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHhchH
Confidence 222221111 1 122233344444445556666666666666665554333 3333334333333333322222
Q ss_pred -ChhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHH
Q 005378 483 -SPEEANQAIQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQ 561 (699)
Q Consensus 483 -~~~~~~qei~~leeEl~r~r~~~~~le~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~q 561 (699)
......+++.-+++++.+.+. .+..++...+.|+++|+.++...- +..+..+||.||+.||+.|++||++
T Consensus 337 ~e~~l~~~el~~~~ee~~~~~s---~~~~k~~~ke~E~q~lr~~l~~~~------~~s~~~elE~rl~~lt~~Li~KQ~~ 407 (511)
T PF09787_consen 337 AELRLYYQELYHYREELSRQKS---PLQLKLKEKESEIQKLRNQLSARA------SSSSWNELESRLTQLTESLIQKQTQ 407 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC---hHHHHHHHHHHHHHHHHHHHHHHh------ccCCcHhHHHHHhhccHHHHHHHHH
Confidence 111112223334444443322 245788899999999999987622 1234679999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCC--CCcccccccccccCCCccc-cccchhhhHHHHHHHhHHhh
Q 005378 562 LETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRS--WSSWEEDAEMKSLEPLPLH-HRHIAGASVQLQKAAKLLDS 638 (699)
Q Consensus 562 lE~L~~Er~sL~~qLE~~~~~a~~~~~~~~~sr~sr~~--s~~~~dd~~~~~~~p~~~~-~~~~~~~~rrvk~A~~~lDs 638 (699)
||.|.+||++|.+|||++...+++ .+ ...+.++.. ++.|.+|.. ...|.++. .+|.+++++||++||++||+
T Consensus 408 lE~l~~ek~al~lqlErl~~~l~~-~~--~~~~~~~~~~~~~~~~~d~~--~r~~~~~~~~~~d~~~~~r~~~a~~~iD~ 482 (511)
T PF09787_consen 408 LESLGSEKNALRLQLERLETQLKE-EA--SNNRPSSILMKYSNSEDDAE--SRVPLLMKDSPHDIGVARRVKRAASVIDS 482 (511)
T ss_pred HHHHHhhhhhccccHHHHHHHHHh-hc--cCCCCchhhHhhccCCCchh--hhhhhhccCCCccchHHHHHHHHHHHHhH
Confidence 999999999999999999999986 21 111222222 223444433 33555444 46677899999999999999
Q ss_pred hhHhHhHHhhcchhHHHHHHHHHHHHHHH
Q 005378 639 GAVRATRFLWRYPIARIILLFYLVFVHLF 667 (699)
Q Consensus 639 ~slr~g~fLRRyP~aRl~~l~Y~vlLHlW 667 (699)
|+||+|+||||||++|+||||||++||||
T Consensus 483 ~~ir~g~fLrr~p~~R~~~i~Y~~~LhlW 511 (511)
T PF09787_consen 483 FSIRLGIFLRRYPMARIFVIIYMALLHLW 511 (511)
T ss_pred hhHHHHHHHhcCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999
No 2
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=99.97 E-value=1.7e-28 Score=263.08 Aligned_cols=307 Identities=15% Similarity=0.159 Sum_probs=220.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 333 NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNAT 412 (699)
Q Consensus 333 ~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~T 412 (699)
++.++-+.++++. ..||++..+.++-.-..++.. ..+.+++.+|+-+.+++..+...+..+
T Consensus 172 d~~e~~~~kdSQl---kvrlqe~~~ll~~Rve~le~~----------------Sal~~lq~~L~la~~~~~~~~e~~i~~ 232 (554)
T KOG4677|consen 172 DYSEDWSPKDSQL---KVRLQEVRRLLKGRVESLERF----------------SALRSLQDKLQLAEEAVSMHDENVITA 232 (554)
T ss_pred hHhhhcccchhhH---HHHHHHHHHHHHhhhHHHHHH----------------HHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 4556655566554 778777777666555555444 157888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcc-CChhHHHH--
Q 005378 413 KMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQK-KSPEEANQ-- 489 (699)
Q Consensus 413 k~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~qq-k~~~~~~q-- 489 (699)
...|..|...+|.+...+.+++.-+.++|.+.+.+++++..++.... +...+++|-++..+..++-+ +.+..+.+
T Consensus 233 ~~~f~~r~~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~~~~l~~--~l~~keeL~~s~~~e~~i~qs~~kstas~~E 310 (554)
T KOG4677|consen 233 VLIFLKRTLSKEIEFRNELEVRQLALRHLIHFKKEIDEQKLLLDLFR--FLDRKEELALSHYREHLIIQSPDKSTASRKE 310 (554)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHhhccCCCCcchhHHHH
Confidence 99999999999999999999999999999999999999999888655 77889999999888887743 33321111
Q ss_pred --------------------HHHHHHHHHHHHHHhHHHH-----------------------------------------
Q 005378 490 --------------------AIQAWQDEVERARQGQRDA----------------------------------------- 508 (699)
Q Consensus 490 --------------------ei~~leeEl~r~r~~~~~l----------------------------------------- 508 (699)
.+-.|..++..+.+..+.+
T Consensus 311 ~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~q~~~~h~~ka~~~~~~~~l~~~~ec~~~e~e~~~~ 390 (554)
T KOG4677|consen 311 FEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESAGQTQIFRKHPRKASILNMPLVLTLFYECFYHETEAEGT 390 (554)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHhhhHhhhhhhchHHHHHHHHHHHHHHHHhhh
Confidence 0111222222111111100
Q ss_pred ---------HHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 509 ---------ENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKE 579 (699)
Q Consensus 509 ---------e~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~ 579 (699)
+.+|-..+.+|++|.+.++. + - . ......++++.+.||+.|++||.++|++..+++.|.++||++
T Consensus 391 ~~~r~~~~~qski~dk~~el~kl~~~l~~-r-~---~-~~s~~~l~~~~~qLt~tl~qkq~~le~v~~~~~~ln~~lerL 464 (554)
T KOG4677|consen 391 FSSRVNLKKQSKIPDKQYELTKLAARLKL-R-A---W-NDSVDALFTTKNQLTYTLKQKQIGLERVVEILHKLNAPLERL 464 (554)
T ss_pred hhhhccchhhccCcchHHHHHHHHHHHHH-H-h---h-hhhHHHHhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 01222334444444444321 0 0 0 113678899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhhhhcccCCCCcccccccccccCCCccccccchhhhHHHHHHHhHHhhhhHhHhHHhhcchhHHHHHHH
Q 005378 580 MNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLEPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLF 659 (699)
Q Consensus 580 ~~~a~~~~~~~~~sr~sr~~s~~~~dd~~~~~~~p~~~~~~~~~~~~rrvk~A~~~lDs~slr~g~fLRRyP~aRl~~l~ 659 (699)
+...- .+ +-....+++.+.+......+..++.+..+ .++++|++.||+|++++|.|||+||.||||+++
T Consensus 465 q~~~N--~~--------~~v~~~~~~n~~~~~~~~v~~l~~d~~~~-~q~r~a~s~VD~~s~~l~~~lr~~psArif~~~ 533 (554)
T KOG4677|consen 465 QEYVN--LV--------EDVDTKLNLNTKFKCHDVVIDLYRDLKDR-QQLRAARSKVDKGSAELEKILRLLPSARIFWKN 533 (554)
T ss_pred HHHhc--cc--------cccceeeccCCCcccccccchHhhhhhhh-HHHHHHHhhcchhhHHHHHHHhcCchhHHHHHH
Confidence 76421 10 11122333333333333334444554454 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 005378 660 YLVFVHLFLMYLLHRLQE 677 (699)
Q Consensus 660 Y~vlLHlWVm~vL~~~~~ 677 (699)
||++|||||||||++|||
T Consensus 534 YmallHLWvmivlLTYTP 551 (554)
T KOG4677|consen 534 YMALLHLWVMIVLLTYTP 551 (554)
T ss_pred HHHHHHHHHHHHHhhcCc
Confidence 999999999999999999
No 3
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=99.58 E-value=1e-12 Score=155.42 Aligned_cols=316 Identities=16% Similarity=0.147 Sum_probs=241.7
Q ss_pred hhhcCCCCchhhhhHHHHHHHHHhhhhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005378 239 ALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQ 318 (699)
Q Consensus 239 ~~k~~~k~~~lqkQLeE~n~~LrsE~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~ 318 (699)
..-.++|.+++.+||++++..+++|++. +.+|++-.+++.+...++++..+.+.+++..|+.....|-.
T Consensus 534 ~~~~~~kv~~~rk~le~~~~d~~~e~~~-----------~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~ 602 (1317)
T KOG0612|consen 534 AADSLEKVNSLRKQLEEAELDMRAESED-----------AGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSK 602 (1317)
T ss_pred HHHHHhhHHHHHHHHHHhhhhhhhhHHH-----------HhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHH
Confidence 3345789999999999999999999996 99999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHH-HHHHHHHHHHHH
Q 005378 319 ELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTET-RMIQALREELAS 397 (699)
Q Consensus 319 EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Ek-e~lqSLE~eLks 397 (699)
+...++........ ..+.....+.++++++..|+..++..+..+.+++..++..++.+++.++ .+..-++.+++.
T Consensus 603 ~~~~~~~~~e~~~~----~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~ 678 (1317)
T KOG0612|consen 603 ENKKLRSELEKERR----QRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKM 678 (1317)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777666544 3344678888999999999999999999999999988888888888877 446667799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhHHHHHHHHHHHH
Q 005378 398 VERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERT-------AKAGELEQKVAMLEVECATLQQELQ 470 (699)
Q Consensus 398 lQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk-------~ra~eLeqQ~smLe~dl~qLkQeLq 470 (699)
++..++++..+|+.+ ++..+ +..+++++.++.+++ +.+.+++.++++|.+++.+.++.++
T Consensus 679 ~q~~~eq~~~E~~~~--~L~~~-----------e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~~~~~~ 745 (1317)
T KOG0612|consen 679 LQNELEQENAEHHRL--RLQDK-----------EAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQSQEKLN 745 (1317)
T ss_pred HHHHHHHHHHHHHHH--HHhhH-----------HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhhhccchh
Confidence 999999999999999 22222 556788888888888 4556789999999999999999998
Q ss_pred HHHHHHHhhccCChhHHHH---HH---HHHHHHHHHHHH--hHHHHHHhhhhHHHHHHHHHHH-----------------
Q 005378 471 DMEARLKRGQKKSPEEANQ---AI---QAWQDEVERARQ--GQRDAENKLSSLEAEVQKMRVE----------------- 525 (699)
Q Consensus 471 d~e~~~~r~qqk~~~~~~q---ei---~~leeEl~r~r~--~~~~le~~l~~lE~elqkLr~e----------------- 525 (699)
+.++........+..+..+ ++ ..++.|+....+ .-+.++.++.++..++..++++
T Consensus 746 ~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLssq~~~~~t~~~Ekq~~~~~~~l~~~K~~~e~~~~q~~~~~~~~~~ 825 (1317)
T KOG0612|consen 746 ELRRSKDQLITEVLKLQSMLEQEISKRLSLQRELKSQEQEVNTKMLEKQLKKLLDELAELKKQLEEENAQLRGLNRSAWG 825 (1317)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchh
Confidence 8887777666554444322 11 111222220000 0033344444444444444333
Q ss_pred -HHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 526 -MAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 586 (699)
Q Consensus 526 -~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~~~ 586 (699)
++.++.+|+.. -.....|++++.+..+...+|. +.+..|+-.+..|.+.+.+.+++.
T Consensus 826 ~~k~lq~~leae-~~~~~~~ktq~~e~~e~~~ek~---~~~~~er~~~~~Q~~~~~~~~~~~ 883 (1317)
T KOG0612|consen 826 QMKELQDQLEAE-QCFSSLMKTQIIEDREEIAEKN---QSLQAERMLLPKQVEQAVTKADSE 883 (1317)
T ss_pred hhHHHHHHHHHH-HHHHHHHHhhhhhhhhhhhhcc---cchhhhhhhcchhcchhhchhhhH
Confidence 34555555521 1238899999999999999997 888999999999999877766665
No 4
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=99.27 E-value=2.3e-09 Score=121.18 Aligned_cols=156 Identities=14% Similarity=0.185 Sum_probs=103.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q 005378 301 AERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQA-------ALSEGNLASLQMNM 373 (699)
Q Consensus 301 elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL-------~r~k~rLeelq~E~ 373 (699)
.+++++..++.++..||..+..-+.++...++.+.+..+.+.+++.-+...+..+++.+ ..++..+.+.-...
T Consensus 193 ~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~ 272 (629)
T KOG0963|consen 193 NLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSK 272 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 34556677778888999999999999999988878888888888877766555555544 44444444444444
Q ss_pred HHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 374 ESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQ 453 (699)
Q Consensus 374 ~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeq 453 (699)
+.-+.+..+..+.-+..++.++..|-..+++.+.+|...+.....-...+|.+.-.+...+..+.++|+.. .-++++..
T Consensus 273 ~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ 351 (629)
T KOG0963|consen 273 KLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKK 351 (629)
T ss_pred hhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHH
Confidence 44433444445555777888888888888777777777776666666677777766666666666666554 33333333
Q ss_pred HHhh
Q 005378 454 KVAM 457 (699)
Q Consensus 454 Q~sm 457 (699)
.++.
T Consensus 352 ELsi 355 (629)
T KOG0963|consen 352 ELSI 355 (629)
T ss_pred HHHH
Confidence 3333
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.91 E-value=3.8e-05 Score=93.56 Aligned_cols=7 Identities=14% Similarity=0.363 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 005378 666 LFLMYLL 672 (699)
Q Consensus 666 lWVm~vL 672 (699)
-++.|+|
T Consensus 614 ~~~~~~l 620 (1164)
T TIGR02169 614 PAFKYVF 620 (1164)
T ss_pred HHHHHHC
Confidence 3344433
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.89 E-value=9.1e-05 Score=90.26 Aligned_cols=11 Identities=27% Similarity=0.202 Sum_probs=4.4
Q ss_pred hHhHHhhcchh
Q 005378 642 RATRFLWRYPI 652 (699)
Q Consensus 642 r~g~fLRRyP~ 652 (699)
.+-.||+.+.+
T Consensus 562 ~~i~~l~~~~~ 572 (1164)
T TIGR02169 562 EAIELLKRRKA 572 (1164)
T ss_pred HHHHHHHhcCC
Confidence 33344444433
No 7
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.88 E-value=5.5e-05 Score=96.26 Aligned_cols=313 Identities=20% Similarity=0.257 Sum_probs=148.6
Q ss_pred cchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhH
Q 005378 267 GQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES---NLAEALAAKNS 343 (699)
Q Consensus 267 l~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es---~~~eaLaak~s 343 (699)
|...-.++......|-+.-..+..+...++..+..+......++.....++..|..+|.......+ ++....+....
T Consensus 1194 l~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~ 1273 (1930)
T KOG0161|consen 1194 LQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQN 1273 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333344444444555555555555555555444433221112222233334444444443333332 23445555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Q 005378 344 EIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL-------TETRMIQALREELASVERRAEEERAA-------H 409 (699)
Q Consensus 344 Ei~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~-------~Eke~lqSLE~eLkslQ~aLe~E~~a-------H 409 (699)
++..+..++..++..+...-...+.+..+++.++..+.. ++.. +..++.+...++..++.+... |
T Consensus 1274 E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~-l~~l~~e~~~l~e~leee~e~~~~l~r~l 1352 (1930)
T KOG0161|consen 1274 ENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENA-LRQLEHELDLLREQLEEEQEAKNELERKL 1352 (1930)
T ss_pred hHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666555555555544444444444444444433 3333 445555555555555554332 3
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCChh
Q 005378 410 NATKMAAMEREVELEHRAAE----ASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPE 485 (699)
Q Consensus 410 k~Tk~ea~~Re~~LEeenae----lseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~qqk~~~ 485 (699)
+...+++..=-.+++..... +.++-..++..+++-...+..+...+..|+-....|++++.++....++.......
T Consensus 1353 sk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~ 1432 (1930)
T KOG0161|consen 1353 SKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAA 1432 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33333333333333433332 23333333333444444455555555556666677777777776666555432222
Q ss_pred HH------HHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHH
Q 005378 486 EA------NQAIQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQ 559 (699)
Q Consensus 486 ~~------~qei~~leeEl~r~r~~~~~le~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ 559 (699)
+- ...++.|+.....+-.....++.....++.++.++...+.++..++++. ......|...+..|+..+.+..
T Consensus 1433 le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l-~renk~l~~ei~dl~~~~~e~~ 1511 (1930)
T KOG0161|consen 1433 LEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEEL-RRENKNLSQEIEDLEEQKDEGG 1511 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1122444444444434444445556677777777777766666555532 1224444444455554444444
Q ss_pred HHH-------HHHHHHHHHHHHHHHHHHH
Q 005378 560 TQL-------ETMASEKAAAEFQLEKEMN 581 (699)
Q Consensus 560 ~ql-------E~L~~Er~sL~~qLE~~~~ 581 (699)
..+ ..+..+++.|+.+|+-+..
T Consensus 1512 k~v~elek~~r~le~e~~elQ~aLeElE~ 1540 (1930)
T KOG0161|consen 1512 KRVHELEKEKRRLEQEKEELQAALEELEA 1540 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 4444444444444444443
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.86 E-value=6.1e-05 Score=91.38 Aligned_cols=58 Identities=14% Similarity=0.247 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 518 EVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQL 576 (699)
Q Consensus 518 elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qL 576 (699)
++..|+.++..+...++.|-.. ......|+..|..++..-...++.|...+..+....
T Consensus 966 ~~~~l~~~i~~lg~aiee~~~~-~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~ 1023 (1179)
T TIGR02168 966 DEEEARRRLKRLENKIKELGPV-NLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAI 1023 (1179)
T ss_pred CHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666555555211 111123555555555554444444444444443333
No 9
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.82 E-value=0.0001 Score=93.95 Aligned_cols=41 Identities=17% Similarity=0.251 Sum_probs=24.0
Q ss_pred hhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005378 264 ISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERE 304 (699)
Q Consensus 264 ~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqe 304 (699)
..+...+-..|..--..+++.+..|.++...+|+.++++.+
T Consensus 959 k~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~ 999 (1930)
T KOG0161|consen 959 KNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQD 999 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444555677777777777777777765544
No 10
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=98.79 E-value=8.5e-08 Score=99.94 Aligned_cols=49 Identities=20% Similarity=0.380 Sum_probs=45.3
Q ss_pred HHHHhHHhhhhHhHhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 005378 630 QKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQ 678 (699)
Q Consensus 630 k~A~~~lDs~slr~g~fLRRyP~aRl~~l~Y~vlLHlWVm~vL~~~~~~ 678 (699)
..-++.+|++.+.+|+|+-.++.+|.|||||+|+||+|||++|+.+...
T Consensus 195 ~~~L~~~eR~~ls~~r~vL~nr~~R~~f~~Y~l~LH~lvf~~l~~~~~~ 243 (248)
T PF08172_consen 195 YKRLSPPERIFLSLTRFVLSNRTTRMLFFFYCLGLHLLVFFVLYYMSHS 243 (248)
T ss_pred HhcCChHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6668899999999999999999999999999999999999999986553
No 11
>PRK02224 chromosome segregation protein; Provisional
Probab=98.77 E-value=0.00058 Score=82.08 Aligned_cols=16 Identities=6% Similarity=0.090 Sum_probs=6.8
Q ss_pred hHHHHHHHHHHHHHHH
Q 005378 514 SLEAEVQKMRVEMAAM 529 (699)
Q Consensus 514 ~lE~elqkLr~e~~~l 529 (699)
.+..++..++.++..+
T Consensus 624 ~~~~~l~~~r~~i~~l 639 (880)
T PRK02224 624 ERRERLAEKRERKREL 639 (880)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 12
>PRK02224 chromosome segregation protein; Provisional
Probab=98.74 E-value=0.00071 Score=81.34 Aligned_cols=17 Identities=12% Similarity=0.319 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005378 562 LETMASEKAAAEFQLEK 578 (699)
Q Consensus 562 lE~L~~Er~sL~~qLE~ 578 (699)
++.+..++..+.-++..
T Consensus 669 l~~~~~~~~~l~~~i~~ 685 (880)
T PRK02224 669 LDELREERDDLQAEIGA 685 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444433
No 13
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.74 E-value=0.00086 Score=76.81 Aligned_cols=75 Identities=25% Similarity=0.251 Sum_probs=44.8
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 508 AENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 586 (699)
Q Consensus 508 le~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~~~ 586 (699)
++..+..-..+.++|+.++...++. ..+--.+....|.+|.-.|--=|..-|.|..|+.-|..-.++++.|++..
T Consensus 383 ~e~~lqEer~E~qkL~~ql~ke~D~----n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 383 LEEHLQEERMERQKLEKQLGKEKDC----NRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334445556677777777654432 11223444555555555555555556677777777777777777777665
No 14
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.66 E-value=0.00044 Score=83.92 Aligned_cols=141 Identities=18% Similarity=0.157 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 005378 283 SRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALS 362 (699)
Q Consensus 283 K~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~ 362 (699)
++.+-++.+..-.++.+.++.++.+.|.+.+.+++.+|+..+.......+. +....+....|......+..+.+..
T Consensus 487 ~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~----~~kv~~~rk~le~~~~d~~~e~~~~ 562 (1317)
T KOG0612|consen 487 EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADS----LEKVNSLRKQLEEAELDMRAESEDA 562 (1317)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 455556677777777777788888888888888888888887666665432 2223334444443333333332222
Q ss_pred H----------HHHHHHHHHHHHHhHhhhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 363 E----------GNLASLQMNMESIMRNRELTET--RMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRA 427 (699)
Q Consensus 363 k----------~rLeelq~E~~~L~e~~s~~Ek--e~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeen 427 (699)
. ..+.....+.+.+.+.+..++. ..+......+......+.+....|.....++-.+...+++.+
T Consensus 563 ~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~ 639 (1317)
T KOG0612|consen 563 GKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETL 639 (1317)
T ss_pred hhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 1 2222222222233333333322 223333344555555555556666666666666666666666
No 15
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.60 E-value=0.0014 Score=81.69 Aligned_cols=39 Identities=18% Similarity=0.142 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 547 RYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE 585 (699)
Q Consensus 547 rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~~ 585 (699)
.+.++.+.+..-..+.+.|...+..|.-.++.+....++
T Consensus 971 e~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~ 1009 (1163)
T COG1196 971 EYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRE 1009 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666677777777777776666665544433
No 16
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=98.56 E-value=4.5e-05 Score=87.03 Aligned_cols=140 Identities=19% Similarity=0.229 Sum_probs=125.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL---TETRMIQALREELASVERRAEEERAAHNATKMAAM 417 (699)
Q Consensus 341 k~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~---~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~ 417 (699)
...+++.+..+|..+++++...+..+..++.++.++...... +..+...+|+..|..++.++..+...+..+...|+
T Consensus 107 l~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl 186 (511)
T PF09787_consen 107 LSSELAVLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEFL 186 (511)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 455778999999999999999999999998888877776665 24444689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcc
Q 005378 418 EREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQK 481 (699)
Q Consensus 418 ~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~qq 481 (699)
.|..+++.....|.+... +.+.+.....+..++.+++.++.......++++.+|+.++.++.+
T Consensus 187 ~rtl~~e~~~~~L~~~~~-A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq 249 (511)
T PF09787_consen 187 KRTLKKEIERQELEERPK-ALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQ 249 (511)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999 667899999999999999999999999999999999999888874
No 17
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.56 E-value=0.0016 Score=77.67 Aligned_cols=72 Identities=19% Similarity=0.355 Sum_probs=52.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 508 AENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ 587 (699)
Q Consensus 508 le~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~~~~ 587 (699)
+...|.....++..+...+..+-.+ ..++..+|.-|.+.|-.|+...+.|.++..+|.++|+...+.+....
T Consensus 292 ~~~eL~rk~~E~~~~qt~l~~~~~~--------~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~ 363 (775)
T PF10174_consen 292 LKLELSRKKSELEALQTRLETLEEQ--------DSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQ 363 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666665543322 45678889999999999999999999999999999988877665543
No 18
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.54 E-value=0.0053 Score=72.94 Aligned_cols=33 Identities=12% Similarity=0.057 Sum_probs=17.2
Q ss_pred HhhcchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 005378 646 FLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQ 678 (699)
Q Consensus 646 fLRRyP~aRl~~l~Y~vlLHlWVm~vL~~~~~~ 678 (699)
+++.|..-++.|.+-++-|--.+=..|+.|-|.
T Consensus 654 vt~ghageqyaf~arllyll~slqaaL~q~e~a 686 (1243)
T KOG0971|consen 654 VTRGHAGEQYAFAARLLYLLSSLQAALHQYEHA 686 (1243)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566666666555443333344555555554
No 19
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.53 E-value=0.0021 Score=81.04 Aligned_cols=64 Identities=20% Similarity=0.217 Sum_probs=30.9
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 510 NKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQL 576 (699)
Q Consensus 510 ~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qL 576 (699)
.++..++.+|..|..++..+.. .. +......+..++..|+-.-...+.++..|..+...|..+|
T Consensus 1028 ~~l~el~~eI~~l~~~~~~~~~--~~-~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL 1091 (1311)
T TIGR00606 1028 NELKEVEEELKQHLKEMGQMQV--LQ-MKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKEL 1091 (1311)
T ss_pred HHHHHHHHHHHHHHHHHhhccH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555443321 01 1223344455555555555555555555566666665555
No 20
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.52 E-value=0.0044 Score=77.35 Aligned_cols=38 Identities=26% Similarity=0.317 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 544 LEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMN 581 (699)
Q Consensus 544 le~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~ 581 (699)
+..++..+...+...+..+..+..+...+..++..+.+
T Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 495 (1163)
T COG1196 458 LRDRLKELERELAELQEELQRLEKELSSLEARLDRLEA 495 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444555555555555555554444
No 21
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.51 E-value=8.9e-05 Score=76.70 Aligned_cols=212 Identities=19% Similarity=0.299 Sum_probs=117.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMERE 420 (699)
Q Consensus 341 k~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re 420 (699)
...++.....++..+...+.....++..+..+...|..++..++.. +...+.+|..+..+|..
T Consensus 6 l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~-le~~eerL~~~~~kL~~---------------- 68 (237)
T PF00261_consen 6 LKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEE-LERAEERLEEATEKLEE---------------- 68 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHCCCCHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHH----------------
Confidence 3444445555555555555555555555555555555555555444 44444444444444432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 005378 421 VELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVER 500 (699)
Q Consensus 421 ~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~qqk~~~~~~qei~~leeEl~r 500 (699)
++....+...++..++......-.++..|+.++..+...+...-.++.+...+ +..++.++.+
T Consensus 69 --~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rk---------------l~~~E~~Le~ 131 (237)
T PF00261_consen 69 --AEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERK---------------LKVLEQELER 131 (237)
T ss_dssp --HHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHH---------------HHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHH
Confidence 11122222223333333333333333344433333333333333333222211 1223333444
Q ss_pred HHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 501 ARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM 580 (699)
Q Consensus 501 ~r~~~~~le~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~ 580 (699)
...-...++.++..++.++..+...++.+.-+.+.+ ......|+.+|+.|++.|.+=-..++........|..++..+.
T Consensus 132 aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~-~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le 210 (237)
T PF00261_consen 132 AEERAEAAESKIKELEEELKSVGNNLKSLEASEEKA-SEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLE 210 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444566777788888888888887777555554 3567899999999999999998888888888888888888887
Q ss_pred HHHHHHH
Q 005378 581 NRLQEVQ 587 (699)
Q Consensus 581 ~~a~~~~ 587 (699)
..+....
T Consensus 211 ~eL~~~k 217 (237)
T PF00261_consen 211 DELEKEK 217 (237)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665543
No 22
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.43 E-value=0.002 Score=68.50 Aligned_cols=86 Identities=16% Similarity=0.263 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh---hcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 492 QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAE---HYSREEHMELEKRYRELTDLLYYKQTQLETMASE 568 (699)
Q Consensus 492 ~~leeEl~r~r~~~~~le~~l~~lE~elqkLr~e~~~lq~qle---q~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~E 568 (699)
...+.|+..++.....+..+|..+...+..|...+..++..+. .-+...-..++..+..|+..+.......+.|..-
T Consensus 212 ~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~ 291 (312)
T PF00038_consen 212 ESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLDV 291 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555444555555555555555555555443222 1122335667777777777777777777777776
Q ss_pred HHHHHHHHH
Q 005378 569 KAAAEFQLE 577 (699)
Q Consensus 569 r~sL~~qLE 577 (699)
|-+|...+.
T Consensus 292 K~~Ld~EIa 300 (312)
T PF00038_consen 292 KLALDAEIA 300 (312)
T ss_dssp HHHHHHHHH
T ss_pred HHhHHHHHH
Confidence 666555443
No 23
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.41 E-value=0.0043 Score=71.25 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=17.5
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005378 278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSV 322 (699)
Q Consensus 278 ~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~ 322 (699)
+..|+....++......+......+......+..++.+|+.++..
T Consensus 187 ~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~ 231 (546)
T PF07888_consen 187 MEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKT 231 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444333333333333333333333344444444433
No 24
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.40 E-value=0.0014 Score=75.03 Aligned_cols=265 Identities=19% Similarity=0.265 Sum_probs=146.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 303 RELSRSYEARIKQLEQELSVYKSEVTKV-----------ESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQM 371 (699)
Q Consensus 303 qek~~~Lq~kl~qLQ~EL~~eQ~er~q~-----------es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~ 371 (699)
=++++.|+++-..|+.++..++...... -...+..+..-...++.++..|..|..+++..+.++.+.+.
T Consensus 55 IekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k 134 (546)
T KOG0977|consen 55 IEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEK 134 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555443332 11222333333445556666677777777777777777766
Q ss_pred HHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 372 NMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGEL 451 (699)
Q Consensus 372 E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eL 451 (699)
.......++...... +..++.++..++.+... +..-+..|-.++.-+-..|..+...++.|...-.++
T Consensus 135 ~~~~~re~~~~~~~~-l~~leAe~~~~krr~~~-----------le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~ 202 (546)
T KOG0977|consen 135 ERRGAREKLDDYLSR-LSELEAEINTLKRRIKA-----------LEDELKRLKAENSRLREELARARKQLDDETLLRVDL 202 (546)
T ss_pred HHhhhHHHHHHHhhh-hhhhhhHHHHHHHHHHH-----------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666555555 55566555555544432 112233445556666777778888888888777777
Q ss_pred HHHHhhhHHHHHHHH----HHHHHHHHHHHhhc-cCChhH-------HHHHH-HHHHHHHHHHHHhHHHH-HHhhhhHH-
Q 005378 452 EQKVAMLEVECATLQ----QELQDMEARLKRGQ-KKSPEE-------ANQAI-QAWQDEVERARQGQRDA-ENKLSSLE- 516 (699)
Q Consensus 452 eqQ~smLe~dl~qLk----QeLqd~e~~~~r~q-qk~~~~-------~~qei-~~leeEl~r~r~~~~~l-e~~l~~lE- 516 (699)
+.++.+|..++.-++ ++|.+....+.+.. .....- +-++| ++++.-+.+.|...+.. ..+|....
T Consensus 203 ~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~ 282 (546)
T KOG0977|consen 203 QNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRT 282 (546)
T ss_pred HhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 777777777776665 66666666555554 111111 11111 23333333333322211 13333333
Q ss_pred -------------HHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
Q 005378 517 -------------AEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDL-----------LYYKQTQLETMASEKAAA 572 (699)
Q Consensus 517 -------------~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~-----------L~eKQ~qlE~L~~Er~sL 572 (699)
+++..++..+..|+-++..+. ..+..|+++|..|..+ |..|...+..|..|+..|
T Consensus 283 ~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE-~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l 361 (546)
T KOG0977|consen 283 SAERANVEQNYAREELRRIRSRISGLRAKLSELE-SRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQL 361 (546)
T ss_pred hhccccchhHHHHHHHHHHHhcccchhhhhcccc-ccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 555555555555554443321 2355666666666655 455667777777777777
Q ss_pred HHHHHHHH
Q 005378 573 EFQLEKEM 580 (699)
Q Consensus 573 ~~qLE~~~ 580 (699)
..+|+.+.
T Consensus 362 ~~Elq~Ll 369 (546)
T KOG0977|consen 362 SVELQKLL 369 (546)
T ss_pred HHHHHHhh
Confidence 77777764
No 25
>PRK03918 chromosome segregation protein; Provisional
Probab=98.39 E-value=0.014 Score=70.11 Aligned_cols=28 Identities=14% Similarity=0.510 Sum_probs=13.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 005378 450 ELEQKVAMLEVECATLQQELQDMEARLK 477 (699)
Q Consensus 450 eLeqQ~smLe~dl~qLkQeLqd~e~~~~ 477 (699)
.+..++..+.....+++..+..++....
T Consensus 402 ~l~~~i~~l~~~~~~~~~~i~eL~~~l~ 429 (880)
T PRK03918 402 EIEEEISKITARIGELKKEIKELKKAIE 429 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555544444433
No 26
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.39 E-value=0.001 Score=76.31 Aligned_cols=320 Identities=18% Similarity=0.196 Sum_probs=196.9
Q ss_pred hHHHhhhhcCCCCch---hhhhHHHHHHHHHhhhhc---------cchH---HHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 005378 234 KRKQQALKADDPPTK---EQDQLDEAQGLLKTTIST---------GQSK---EARLARVCAGLSSRLQEYKSENAQLEEL 298 (699)
Q Consensus 234 ~~~~~~~k~~~k~~~---lqkQLeE~n~~LrsE~et---------l~~k---e~qLa~~~aRLrK~~~ELkke~aqLEe~ 298 (699)
+.|+.=.-.||+..- =.++||.-|..|..++.. .+-| ++.| +.+++.+.+-.+..+.+|..
T Consensus 39 rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El----~~ar~~l~e~~~~ra~~e~e 114 (546)
T KOG0977|consen 39 REKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAEL----ATARKLLDETARERAKLEIE 114 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhH----HHHHHHHHHHHHHHHHHHHH
Confidence 344444445554322 234677777777766432 2222 3443 34566677777788888888
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 005378 299 LVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMR 378 (699)
Q Consensus 299 l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e 378 (699)
+.-+++-...|..++...++.+...+..... +..+++..++++.-+..++..++.++.+++.....+..++.++..
T Consensus 115 i~kl~~e~~elr~~~~~~~k~~~~~re~~~~----~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 115 ITKLREELKELRKKLEKAEKERRGAREKLDD----YLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhHHHHHH----HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 8888887788888777777777665554443 445778889999999999999999999999999999988888876
Q ss_pred hhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 379 NREL-------TETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGEL 451 (699)
Q Consensus 379 ~~s~-------~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eL 451 (699)
.+.. .+.+ +++|.++|.-+++..+.|..+-..-...-.. -..-+.=..+|..||.++.-.++...
T Consensus 191 ~ld~Etllr~d~~n~-~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t-~~~r~~F~~eL~~Ai~eiRaqye~~~------ 262 (546)
T KOG0977|consen 191 QLDDETLLRVDLQNR-VQTLLEELAFLKRIHKQEIEEERRKARRDTT-ADNREYFKNELALAIREIRAQYEAIS------ 262 (546)
T ss_pred HHHHHHHHHHHHHhH-HHHHHHHHHHHHhccHHHHHHHHHHHhhccc-ccchHHHHHHHHHHHHHHHHHHHHHH------
Confidence 6544 4666 7778888888877776665442222110000 00001112333444433332222211
Q ss_pred HHHHhhhHHHHHHHHHHHH-HHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 005378 452 EQKVAMLEVECATLQQELQ-DMEARLKRGQKKSPEEANQAIQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMK 530 (699)
Q Consensus 452 eqQ~smLe~dl~qLkQeLq-d~e~~~~r~qqk~~~~~~qei~~leeEl~r~r~~~~~le~~l~~lE~elqkLr~e~~~lq 530 (699)
..-+.+++ -|+.++..+.. .....+.......+|+.+.+.....+-.+|+.+|....-|.+++..|+
T Consensus 263 -----------~~nR~diE~~Y~~kI~~i~~-~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~ 330 (546)
T KOG0977|consen 263 -----------RQNRKDIESWYKRKIQEIRT-SAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLE 330 (546)
T ss_pred -----------HHhHHHHHHHHHHHHHHHHh-hhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHH
Confidence 11122221 13444444431 111222233556777777776666666677766666666666666666
Q ss_pred Hhhh---hcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 531 RDAE---HYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMN 581 (699)
Q Consensus 531 ~qle---q~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~ 581 (699)
.++. ..|...-.+.+..+..|.++|-.---.++.|..=+.+|...+..-..
T Consensus 331 ~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~YRk 384 (546)
T KOG0977|consen 331 YQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAYRK 384 (546)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHHHH
Confidence 5554 23555567888999999999999889999999988888877766443
No 27
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.33 E-value=0.027 Score=70.74 Aligned_cols=28 Identities=25% Similarity=0.542 Sum_probs=13.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhh
Q 005378 507 DAENKLSSLEAEVQKMRVEMAAMKRDAE 534 (699)
Q Consensus 507 ~le~~l~~lE~elqkLr~e~~~lq~qle 534 (699)
.++..+.....++..++.++..+.+.|.
T Consensus 508 ~a~~~l~~~~~~~~~~~~~~~~l~~~L~ 535 (1201)
T PF12128_consen 508 QAEEELRQARRELEELRAQIAELQRQLD 535 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3334444444555555555444444443
No 28
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.33 E-value=0.01 Score=74.98 Aligned_cols=43 Identities=7% Similarity=0.123 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 542 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQ 584 (699)
Q Consensus 542 ~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~ 584 (699)
..|..-...|++++..-......+..++..|.-|+..+...++
T Consensus 1050 ~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~ 1092 (1311)
T TIGR00606 1050 LQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELR 1092 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4555555555555555555666666666666666666655553
No 29
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.32 E-value=0.00056 Score=70.80 Aligned_cols=216 Identities=20% Similarity=0.227 Sum_probs=112.8
Q ss_pred CCchhhhhHHHHHHHHHhhhhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005378 245 PPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK 324 (699)
Q Consensus 245 k~~~lqkQLeE~n~~LrsE~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ 324 (699)
|+..++.+++++...+..--..|...+.+ ..........|...+..+|..+....+++.....++..++..+....
T Consensus 2 K~~~l~~eld~~~~~~~~~~~~l~~~~~~----~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~e 77 (237)
T PF00261_consen 2 KIQQLKDELDEAEERLEEAEEKLKEAEKR----AEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESE 77 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666555554433322222221 22333344555666666666655555566666667777777777766
Q ss_pred HHHHHHHH---HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHH
Q 005378 325 SEVTKVES---NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERR 401 (699)
Q Consensus 325 ~er~q~es---~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~a 401 (699)
..+..++. ...+.+.....++.........++..+.....+|.-++.++.++..+....+.. +..|+.+|+.+-+.
T Consensus 78 r~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~k-i~eLE~el~~~~~~ 156 (237)
T PF00261_consen 78 RARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESK-IKELEEELKSVGNN 156 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh-HHHHHHHHHHHHHH
Confidence 66655544 233445555555555555555556666666666666666666666666666666 66666666666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 005378 402 AEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQEL 469 (699)
Q Consensus 402 Le~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeL 469 (699)
|. +.......+..|+..++.....|..-+..++......-+++..|+.++..|+.++...+.++
T Consensus 157 lk----~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~ 220 (237)
T PF00261_consen 157 LK----SLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKY 220 (237)
T ss_dssp HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH----HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53 22233334444554444444444444444444444333444444444444444443333333
No 30
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.31 E-value=0.015 Score=66.98 Aligned_cols=40 Identities=18% Similarity=0.173 Sum_probs=22.6
Q ss_pred cccccchhhhhchhHHHhhhhcCCCCchhhhhHHHHHHHHHhh
Q 005378 221 LKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTT 263 (699)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~k~~~k~~~lqkQLeE~n~~LrsE 263 (699)
-|++=.++|++++-|++ +..++....+.||+-++..|..=
T Consensus 7 Vk~Avs~FG~~~~~k~~---~~~e~~~~~e~eL~~~qeel~~~ 46 (522)
T PF05701_consen 7 VKEAVSLFGGSIDWKKH---QSLERVKEKETELEKAQEELAKL 46 (522)
T ss_pred HHHHHHHcCCccccccC---CchhhhhHHHHHHHHHHHHHHHH
Confidence 45555566666666655 22255556666766666554443
No 31
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.29 E-value=0.018 Score=67.01 Aligned_cols=13 Identities=54% Similarity=0.519 Sum_probs=9.6
Q ss_pred CCCCCcccCCCCC
Q 005378 150 ATPNGEILNENDS 162 (699)
Q Consensus 150 ~~~~g~~~~~~~~ 162 (699)
++.-|+|+|+.++
T Consensus 237 ~~~a~~~~n~~~d 249 (961)
T KOG4673|consen 237 TTNAQEILNENLD 249 (961)
T ss_pred hhhhhhhhccccc
Confidence 6677888887764
No 32
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.24 E-value=0.029 Score=67.33 Aligned_cols=74 Identities=20% Similarity=0.274 Sum_probs=42.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhhh----c-chhhhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q 005378 510 NKLSSLEAEVQKMRVEMAAMKRDAEH----Y-SREEHMELEKRYRELTDLLYYKQTQLETMA-------SEKAAAEFQLE 577 (699)
Q Consensus 510 ~~l~~lE~elqkLr~e~~~lq~qleq----~-~~~~~~ele~rl~eLte~L~eKQ~qlE~L~-------~Er~sL~~qLE 577 (699)
.+|..++-.+.+.+.++..+..++.. + +......|+..+....+....-|..|+.|. .|++++..++-
T Consensus 514 s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~ 593 (775)
T PF10174_consen 514 SEIERLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIG 593 (775)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34444444444444444444433332 1 344566777777777777777776666555 47777766666
Q ss_pred HHHHHH
Q 005378 578 KEMNRL 583 (699)
Q Consensus 578 ~~~~~a 583 (699)
.+...+
T Consensus 594 ~LekeL 599 (775)
T PF10174_consen 594 ELEKEL 599 (775)
T ss_pred HHHHHH
Confidence 655543
No 33
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.23 E-value=0.022 Score=72.74 Aligned_cols=293 Identities=17% Similarity=0.159 Sum_probs=138.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 005378 279 AGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQ 358 (699)
Q Consensus 279 aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~Leqe 358 (699)
++.++...+..+.....+..+..+.+....+..++..|+.+....+.-+...+. ......++..+...+..+...
T Consensus 289 ag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee-----~lr~q~ei~~l~~~LeELee~ 363 (1486)
T PRK04863 289 LELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQT-----ALRQQEKIERYQADLEELEER 363 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555566666666666666555544333322 011234444445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H
Q 005378 359 AALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRA----------A 428 (699)
Q Consensus 359 L~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeen----------a 428 (699)
+......++.+..+...+...+...+.+ +..++..+..+++.+..-...-..-+. ....++..+ .
T Consensus 364 Lee~eeeLeeleeeleeleeEleelEee-LeeLqeqLaelqqel~elQ~el~q~qq----~i~~Le~~~~~~~~~~~SdE 438 (1486)
T PRK04863 364 LEEQNEVVEEADEQQEENEARAEAAEEE-VDELKSQLADYQQALDVQQTRAIQYQQ----AVQALERAKQLCGLPDLTAD 438 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhCCCCCCHH
Confidence 5555555555555555555555444444 444444444444444332222111111 222222222 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCChhH-HHHHHHHHHHHHHHHHHh---
Q 005378 429 EASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEE-ANQAIQAWQDEVERARQG--- 504 (699)
Q Consensus 429 elseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~qqk~~~~-~~qei~~leeEl~r~r~~--- 504 (699)
+|...+...+.++.+....+.++++++.+++..+.++++.+..+. .+..++.-. +-.....+-......+..
T Consensus 439 eLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~----~~~Gkv~~~~a~~~~~~~~~~~~~~~~~~~~ 514 (1486)
T PRK04863 439 NAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVR----KIAGEVSRSEAWDVARELLRRLREQRHLAEQ 514 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHcCCcCHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 355566666777777777777888887777777777776664443 233333222 211111111111111110
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhh----hhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 505 QRDAENKLSSLEAEVQKMRVEMAAMKRDA----EHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM 580 (699)
Q Consensus 505 ~~~le~~l~~lE~elqkLr~e~~~lq~ql----eq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~ 580 (699)
..-+..++..++..++.-+..-. +-.++ ...+ .+...|+.=..++...+..-....+.+...+..++.+++.+.
T Consensus 515 ~~~~~~~~~~l~~~~~~q~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~ 592 (1486)
T PRK04863 515 LQQLRMRLSELEQRLRQQQRAER-LLAEFCKRLGKNL-DDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQ 592 (1486)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01112333333332222222111 11111 1111 123344433444444444445666667777788888888877
Q ss_pred HHHHHHH
Q 005378 581 NRLQEVQ 587 (699)
Q Consensus 581 ~~a~~~~ 587 (699)
.++....
T Consensus 593 ~~i~~l~ 599 (1486)
T PRK04863 593 ARIQRLA 599 (1486)
T ss_pred HHHHHHH
Confidence 7765543
No 34
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.22 E-value=0.029 Score=66.25 Aligned_cols=187 Identities=19% Similarity=0.236 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHh
Q 005378 388 IQALREELASVERRAEEERAAHNATKMAAMERE----VELEHRAAEASMALARIQRIADERT-------AKAGELEQKVA 456 (699)
Q Consensus 388 lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re----~~LEeenaelseALa~lQrkL~EEk-------~ra~eLeqQ~s 456 (699)
+.-+++..+.++.-|+- -++|+.+++.+. .-++.+|-.+..-.+.++.-|-|.+ .+..+|+++..
T Consensus 286 lSqkeelVk~~qeeLd~----lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd 361 (1265)
T KOG0976|consen 286 LSQKEELVKELQEELDT----LKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRD 361 (1265)
T ss_pred hhHHHHHHHHHHHHHHH----HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 55555556666555543 344444444441 1234455445555555555555555 56679999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHhHHHHH---HhhhhHHHHHHHHHHHHHHHHHhh
Q 005378 457 MLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQGQRDAE---NKLSSLEAEVQKMRVEMAAMKRDA 533 (699)
Q Consensus 457 mLe~dl~qLkQeLqd~e~~~~r~qqk~~~~~~qei~~leeEl~r~r~~~~~le---~~l~~lE~elqkLr~e~~~lq~ql 533 (699)
|+..+..++++.+..-+..+.+...- .+...+++..++..+-++...+++-+ ++|....+.+..|......+--|+
T Consensus 362 ~al~dvr~i~e~k~nve~elqsL~~l-~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~ 440 (1265)
T KOG0976|consen 362 MALMDVRSIQEKKENVEEELQSLLEL-QAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQL 440 (1265)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999887766666555421 11222234444444444433322222 334444444444444422222222
Q ss_pred hhcc-------------hhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 005378 534 EHYS-------------REEHMELEKRYRELTDLLYYKQ---TQLETMASEKAAAEFQLEKE 579 (699)
Q Consensus 534 eq~~-------------~~~~~ele~rl~eLte~L~eKQ---~qlE~L~~Er~sL~~qLE~~ 579 (699)
++.. -..++++=.+|+.|.+.|.-+- .+++.|..|..--..+++-+
T Consensus 441 s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle~qrKVeqe~emlKaen~rqakkiefm 502 (1265)
T KOG0976|consen 441 SNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLEKQRKVEQEYEMLKAENERQAKKIEFM 502 (1265)
T ss_pred hhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 2100 0135667778888888776443 45566655544444444433
No 35
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.21 E-value=0.049 Score=68.56 Aligned_cols=40 Identities=28% Similarity=0.374 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 541 HMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM 580 (699)
Q Consensus 541 ~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~ 580 (699)
...++.++..+...+......+..+..+......+|+...
T Consensus 818 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~ 857 (1201)
T PF12128_consen 818 KPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEEL 857 (1201)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555444444444444444444433
No 36
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.20 E-value=0.032 Score=71.31 Aligned_cols=164 Identities=21% Similarity=0.259 Sum_probs=116.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhH
Q 005378 305 LSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTE 384 (699)
Q Consensus 305 k~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~E 384 (699)
..+.++.++..|+.+|..++..+....+++++-....+.++...+..++.+...+......+..++.+...+...+++++
T Consensus 799 ~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~ 878 (1822)
T KOG4674|consen 799 TKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELE 878 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466678999999999999999998888888888899999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Q 005378 385 TRMIQALREELASVE------------RRAEEERAAHNATKMAAMERE--------------VELEHRAAEASMALARIQ 438 (699)
Q Consensus 385 ke~lqSLE~eLkslQ------------~aLe~E~~aHk~Tk~ea~~Re--------------~~LEeenaelseALa~lQ 438 (699)
++ +.+...+...+. ..|..+...|..++..+-.++ ..++..+..+.+....++
T Consensus 879 k~-l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~e 957 (1822)
T KOG4674|consen 879 KR-LKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELE 957 (1822)
T ss_pred HH-HHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 88 555554433333 345555555544444444443 333444445555555555
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 005378 439 RIADERTAKAGELEQKVAMLEVECATLQQEL 469 (699)
Q Consensus 439 rkL~EEk~ra~eLeqQ~smLe~dl~qLkQeL 469 (699)
.++.....+...|+..++.|+.++..++.++
T Consensus 958 a~ie~~~~k~tslE~~ls~L~~~~~~l~~e~ 988 (1822)
T KOG4674|consen 958 AKIESLHKKITSLEEELSELEKEIENLREEL 988 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555666666666666666665555444
No 37
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.14 E-value=0.016 Score=68.86 Aligned_cols=224 Identities=17% Similarity=0.263 Sum_probs=116.8
Q ss_pred hHHHHHHHHHhhhhccchHHHHHH-------HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005378 252 QLDEAQGLLKTTISTGQSKEARLA-------RVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK 324 (699)
Q Consensus 252 QLeE~n~~LrsE~etl~~ke~qLa-------~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ 324 (699)
.|+.-..+||+|..+.-.-|..|- -..-.++-.++.++.++.+|+..+..|--....=...+..|++-|..++
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~ 501 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEER 501 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666777777554333333322 2234455556666666666666555442222222224556666666666
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHH
Q 005378 325 SEVTKVESNLAEALAAKNSEIETLVSSI----DALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVER 400 (699)
Q Consensus 325 ~er~q~es~~~eaLaak~sEi~eLe~RL----~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~ 400 (699)
..+...+..+.+.-.++..+-+....-. ..-..--+..+.+...++.|.++|..++-..+.+ +..++.++..+..
T Consensus 502 ~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~-~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 502 RQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQ-IRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 6666665544433222111111000000 0000122345666677777777777777666666 6666666533332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhc
Q 005378 401 RAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (699)
Q Consensus 401 aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~q 480 (699)
-- +..|+.+.+ ++.-+.-|++.++-|...|++--|.-.+=.....+.++|+.+++..+..--+||.+++.++....
T Consensus 581 ~~---~e~~~~~e~-L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~ 656 (697)
T PF09726_consen 581 YE---KESEKDTEV-LMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL 656 (697)
T ss_pred HH---hhhhhhHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 223333322 44556667777777777775544433333355567777777777777666666666666665543
No 38
>PRK03918 chromosome segregation protein; Provisional
Probab=98.12 E-value=0.051 Score=65.45 Aligned_cols=14 Identities=7% Similarity=0.064 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 005378 544 LEKRYRELTDLLYY 557 (699)
Q Consensus 544 le~rl~eLte~L~e 557 (699)
|+.++.+|..++..
T Consensus 457 ~~~ei~~l~~~~~~ 470 (880)
T PRK03918 457 YTAELKRIEKELKE 470 (880)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 39
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.09 E-value=0.062 Score=65.97 Aligned_cols=162 Identities=15% Similarity=0.214 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 005378 388 IQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQ 467 (699)
Q Consensus 388 lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQ 467 (699)
++..+.++..|+..++.+...-..-+..+-.+-.-+-++.-.+.+.|.-.-.++.+-+.+++..+.++.+|..-..+...
T Consensus 442 i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~ 521 (1293)
T KOG0996|consen 442 IQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLK 521 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555544433322222222222222222222233333333344444445555555555555555555555
Q ss_pred HHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHH
Q 005378 468 ELQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKR 547 (699)
Q Consensus 468 eLqd~e~~~~r~qqk~~~~~~qei~~leeEl~r~r~~~~~le~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~r 547 (699)
++..++..+...... ...-...+..|+.++. ...+++...+.++.++++++..++ .+
T Consensus 522 ~~e~lk~~L~~~~~~-~~e~~~~l~~~k~~l~-------~~k~e~~~~~k~l~~~~~e~~~~~---------------~~ 578 (1293)
T KOG0996|consen 522 KVEELKGKLLASSES-LKEKKTELDDLKEELP-------SLKQELKEKEKELPKLRKEERNLK---------------SQ 578 (1293)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhh-------hHHHHHHHHHHhHHHHHHHHHHHH---------------HH
Confidence 555555554443311 1111111233333333 223344456666666666554433 35
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 548 YRELTDLLYYKQTQLETMASEKAAA 572 (699)
Q Consensus 548 l~eLte~L~eKQ~qlE~L~~Er~sL 572 (699)
++.+.+.+++--..+..-.+....|
T Consensus 579 ~~~~rqrveE~ks~~~~~~s~~kVl 603 (1293)
T KOG0996|consen 579 LNKLRQRVEEAKSSLSSSRSRNKVL 603 (1293)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 5555555555544444444444333
No 40
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.09 E-value=0.061 Score=65.06 Aligned_cols=239 Identities=20% Similarity=0.200 Sum_probs=129.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh----------------hHHHHHHHHHHHHHHHHHHHHH
Q 005378 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL----------------TETRMIQALREELASVERRAEE 404 (699)
Q Consensus 341 k~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~----------------~Eke~lqSLE~eLkslQ~aLe~ 404 (699)
..++|=.++..+.-+..+....+.+.+++..|+..|+-.-.. .++.-++...+.|.+ -++|..
T Consensus 299 leseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts-~ralkl 377 (1195)
T KOG4643|consen 299 LESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTS-DRALKL 377 (1195)
T ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhh-HHHHHH
Confidence 445566666666666666666666677777766665543322 122323333444554 448888
Q ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005378 405 ERAAHNATKMAAME----------REVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEA 474 (699)
Q Consensus 405 E~~aHk~Tk~ea~~----------Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~ 474 (699)
+...|.-|..=-.. ...+|+.++..|+.-...++.++.+......+|+.-.++|.++.+.|.++......
T Consensus 378 lLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~ 457 (1195)
T KOG4643|consen 378 LLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTR 457 (1195)
T ss_pred HHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877542222 24455666677888888888888888888888888888888888888887765544
Q ss_pred HHHhhccCChhHHHH---HHHHHHHHHHHHHHhHHHHH-------HhhhhHHHHHHHHHHHHHHHHHhhh----------
Q 005378 475 RLKRGQKKSPEEANQ---AIQAWQDEVERARQGQRDAE-------NKLSSLEAEVQKMRVEMAAMKRDAE---------- 534 (699)
Q Consensus 475 ~~~r~qqk~~~~~~q---ei~~leeEl~r~r~~~~~le-------~~l~~lE~elqkLr~e~~~lq~qle---------- 534 (699)
-..+.... .+...+ -..|+.++.+.++...+.+- ..++.+.....+++.+......+++
T Consensus 458 s~~rq~~e-~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe 536 (1195)
T KOG4643|consen 458 SLSRQSLE-NEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELE 536 (1195)
T ss_pred hHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443211 111111 11333333333332222222 2223333333333333322222211
Q ss_pred ----hcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 535 ----HYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL 583 (699)
Q Consensus 535 ----q~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a 583 (699)
+|- .....|-+||+.|... -+|+..+|.-..+..-.-..+.....++
T Consensus 537 ~~l~~lE-~ENa~LlkqI~~Lk~t-~qn~~~LEq~~n~lE~~~~elkk~idaL 587 (1195)
T KOG4643|consen 537 ELLGNLE-EENAHLLKQIQSLKTT-SQNGALLEQNNNDLELIHNELKKYIDAL 587 (1195)
T ss_pred HHHhhHH-HHHHHHHHHHHHHHHH-hHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 121 1234444577777666 6677776666665555555555444443
No 41
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.99 E-value=0.14 Score=65.75 Aligned_cols=41 Identities=12% Similarity=0.103 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 005378 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRE 381 (699)
Q Consensus 341 k~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s 381 (699)
...++..++.++..++.++...+..+.+++..+..++....
T Consensus 374 leeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~ 414 (1486)
T PRK04863 374 ADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAI 414 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444433
No 42
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.99 E-value=0.078 Score=62.86 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=17.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhhc
Q 005378 450 ELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (699)
Q Consensus 450 eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~q 480 (699)
-|...++-.++-.+.++.+|+.+++-..+..
T Consensus 281 ~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~ 311 (1265)
T KOG0976|consen 281 VLGDELSQKEELVKELQEELDTLKQTRTRAD 311 (1265)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444455555666666666655555444
No 43
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.96 E-value=0.16 Score=65.39 Aligned_cols=274 Identities=21% Similarity=0.280 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 005378 308 SYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSS----IDALKKQAALSEGNLASLQMNMESIMRNRELT 383 (699)
Q Consensus 308 ~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~R----L~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~ 383 (699)
.++-++..|.++.+-++..-. .+...|......+..+..+ +..+...|...+..+..+++.+..|......+
T Consensus 175 s~q~k~~rl~QEksll~s~~~----wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eL 250 (1822)
T KOG4674|consen 175 SSQLKEERLEQEKSLLESENK----WLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEEL 250 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444433333 3445566777777788777 88888889999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005378 384 ETRMIQALREELASVERRAE-------EERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVA 456 (699)
Q Consensus 384 Eke~lqSLE~eLkslQ~aLe-------~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~s 456 (699)
.+. +.++-..|+.+..+.+ .|...|...=.-+..-+.+++...++|..++..+++-|.+-.-+..+...++.
T Consensus 251 s~~-ie~~~~~ls~~k~t~~s~~~kf~~El~~q~kL~eL~ks~~ee~~~~~~el~~~i~~~~klled~~~~~~e~~d~l~ 329 (1822)
T KOG4674|consen 251 SKK-IESLNLELSKLKDTAESSEEKFEKELSTQKKLNELWKSKLEELSHEVAELQRAIEELEKLLEDASERNKENTDQLK 329 (1822)
T ss_pred HHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 888 7777766555554443 45555555555555566777888888899999888888888877777766666
Q ss_pred hhHHHHHHHHHHH----HHHHHHHHhhccCChh-------H-----HHH-------------HHHHHHHHHHHHHHhHHH
Q 005378 457 MLEVECATLQQEL----QDMEARLKRGQKKSPE-------E-----ANQ-------------AIQAWQDEVERARQGQRD 507 (699)
Q Consensus 457 mLe~dl~qLkQeL----qd~e~~~~r~qqk~~~-------~-----~~q-------------ei~~leeEl~r~r~~~~~ 507 (699)
.++..+..+..++ ..+++.+...-....+ . +.. ....++.++....-..+.
T Consensus 330 e~~~sl~~~~~~~~k~~~~le~~l~~an~~~~~~~~~~~~s~~~a~~s~~~~~~~sLtk~ys~~~~~qqqle~~~lele~ 409 (1822)
T KOG4674|consen 330 ELEQSLSKLNEKLEKKVSRLEGELEDANDSLSATGESSMVSEKAALASSLIRPGSSLTKLYSKYSKLQQQLESLKLELER 409 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcccchhhhHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666555554444 2333222222111000 1 000 002223333332222222
Q ss_pred HHHhhhhHHHHHHHHHHHHHH--------------HHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 508 AENKLSSLEAEVQKMRVEMAA--------------MKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAE 573 (699)
Q Consensus 508 le~~l~~lE~elqkLr~e~~~--------------lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~ 573 (699)
+...|.++-+++...--.++. +-+.+. ...+....++..+..|+-.+-...+++-.|......|.
T Consensus 410 ~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~-~~~q~~~~~e~~~~~l~~~~~~~~renk~l~~~~sdls 488 (1822)
T KOG4674|consen 410 LQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELD-FSNQKIQKLEKELESLKKQLNDLERENKLLEQQISDLS 488 (1822)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333322222222111 111111 12335566777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHH
Q 005378 574 FQLEKEMNRLQEVQ 587 (699)
Q Consensus 574 ~qLE~~~~~a~~~~ 587 (699)
-|+--+...++..+
T Consensus 489 rqv~~Ll~el~e~~ 502 (1822)
T KOG4674|consen 489 RQVNVLLLELDELR 502 (1822)
T ss_pred HHHHHHHHHHHHHH
Confidence 77766666666665
No 44
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.064 Score=63.40 Aligned_cols=139 Identities=15% Similarity=0.234 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHH----------H
Q 005378 423 LEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAI----------Q 492 (699)
Q Consensus 423 LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~qqk~~~~~~qei----------~ 492 (699)
|....++|+.-|...+-.+.-.+..++.+..++..+-.+..+|+++|++++.++-+.......+..+ + .
T Consensus 449 Ln~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~q-lkq~q~a~~~~~ 527 (1118)
T KOG1029|consen 449 LNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQ-LKQKQSAHKETT 527 (1118)
T ss_pred HHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-HHHhhhhccCcc
Confidence 3333344444444444444444455555555555555555555555555554444332111111000 1 1
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 005378 493 AWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMAS-EKAA 571 (699)
Q Consensus 493 ~leeEl~r~r~~~~~le~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~-Er~s 571 (699)
+-..++++++..++.+.. .+++++..|.++...-. .....+.+|+.+|++.+..+|.+.+.+.. ++.-
T Consensus 528 ~~~s~L~aa~~~ke~irq---~ikdqldelskE~esk~--------~eidi~n~qlkelk~~~~~q~lake~~yk~e~d~ 596 (1118)
T KOG1029|consen 528 QRKSELEAARRKKELIRQ---AIKDQLDELSKETESKL--------NEIDIFNNQLKELKEDVNSQQLAKEELYKNERDK 596 (1118)
T ss_pred hHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH--------HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112334444333322222 23333444444432211 11345788999999999999988888876 6655
Q ss_pred HH
Q 005378 572 AE 573 (699)
Q Consensus 572 L~ 573 (699)
+.
T Consensus 597 ~k 598 (1118)
T KOG1029|consen 597 LK 598 (1118)
T ss_pred HH
Confidence 54
No 45
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.93 E-value=0.089 Score=61.55 Aligned_cols=45 Identities=16% Similarity=0.260 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Q 005378 435 ARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRG 479 (699)
Q Consensus 435 a~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~ 479 (699)
..++..+..+++++.++++++..+..++++++.++..++...++.
T Consensus 714 ~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~ 758 (961)
T KOG4673|consen 714 GQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIREL 758 (961)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888999999999999999999988888888876665555443
No 46
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.93 E-value=0.01 Score=70.46 Aligned_cols=94 Identities=23% Similarity=0.327 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHH
Q 005378 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMI 388 (699)
Q Consensus 309 Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~l 388 (699)
|+.++..|..+|.. ..+.+.+++.++....+.-..++..|+.+.++.+.+..++..+...+++=++.+..+|++ +
T Consensus 423 LE~dvkkLraeLq~----~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkr-L 497 (697)
T PF09726_consen 423 LEADVKKLRAELQS----SRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKR-L 497 (697)
T ss_pred HHHHHHHHHHHHHh----hhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 34444444444432 233444566666666665556666777777777777766666666666655555555665 3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005378 389 QALREELASVERRAEEERA 407 (699)
Q Consensus 389 qSLE~eLkslQ~aLe~E~~ 407 (699)
...+..-..++..|..|+.
T Consensus 498 ~eE~~~R~~lEkQL~eErk 516 (697)
T PF09726_consen 498 AEERRQRASLEKQLQEERK 516 (697)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333444544444433
No 47
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.90 E-value=0.051 Score=57.83 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=12.7
Q ss_pred HHhhhhHHHHHHHHHHHHHHH
Q 005378 509 ENKLSSLEAEVQKMRVEMAAM 529 (699)
Q Consensus 509 e~~l~~lE~elqkLr~e~~~l 529 (699)
...|..++.++..++.+|...
T Consensus 261 ~~~i~~le~el~~l~~~~~~~ 281 (312)
T PF00038_consen 261 QAEIAELEEELAELREEMARQ 281 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhccchhHHHHHHHHHHH
Confidence 345556667777777666443
No 48
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.87 E-value=0.088 Score=62.01 Aligned_cols=29 Identities=21% Similarity=0.174 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 551 LTDLLYYKQTQLETMASEKAAAEFQLEKE 579 (699)
Q Consensus 551 Lte~L~eKQ~qlE~L~~Er~sL~~qLE~~ 579 (699)
...+|-+.+..|+.+..++.-|..+|-.+
T Consensus 284 ~~~ELq~~qe~Lea~~qqNqqL~~qls~~ 312 (617)
T PF15070_consen 284 AHQELQEAQEHLEALSQQNQQLQAQLSLM 312 (617)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Confidence 33455556777888888877777777653
No 49
>PRK11637 AmiB activator; Provisional
Probab=97.87 E-value=0.025 Score=63.32 Aligned_cols=85 Identities=24% Similarity=0.281 Sum_probs=37.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 005378 281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAA 360 (699)
Q Consensus 281 LrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~ 360 (699)
+++.+.+++.++.+++..+..++.....++.++..++.++...+..+...+. .+...+.+|..++..|..++.++.
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~----~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQN----TLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555544444444444455555555555444444333322 222333333344444444444444
Q ss_pred HHHHHHHHH
Q 005378 361 LSEGNLASL 369 (699)
Q Consensus 361 r~k~rLeel 369 (699)
..+..+...
T Consensus 121 ~~~~~l~~r 129 (428)
T PRK11637 121 AQERLLAAQ 129 (428)
T ss_pred HHHHHHHHH
Confidence 433333333
No 50
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.85 E-value=0.11 Score=59.98 Aligned_cols=138 Identities=18% Similarity=0.279 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHhHHHHH-
Q 005378 431 SMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQGQRDAE- 509 (699)
Q Consensus 431 seALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~qqk~~~~~~qei~~leeEl~r~r~~~~~le- 509 (699)
...|..+...|.+-+..+.........|.....+|+-+|...+..+.+..++. ......+..|+.++.+.+..+..+.
T Consensus 280 ~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e-~~a~~~v~~L~~eL~~~r~eLea~~~ 358 (522)
T PF05701_consen 280 QSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKERE-KEASSEVSSLEAELNKTRSELEAAKA 358 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHhhHHHHHHHHHHHHHHHHh
Confidence 33444555555555544444444444444444555555544444444444322 1222235666666665554433222
Q ss_pred ------HhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 510 ------NKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL 583 (699)
Q Consensus 510 ------~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a 583 (699)
..+..+...|+++..+... .+.-.....+++..-...++.......++..+|+.+..-+
T Consensus 359 ~e~~~k~~~~~l~~~Lqql~~Eae~---------------Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~ 423 (522)
T PF05701_consen 359 EEEKAKEAMSELPKALQQLSSEAEE---------------AKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEA 423 (522)
T ss_pred hhcchhhhHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222333333333333322 2333444444444444555555566666666665555443
Q ss_pred H
Q 005378 584 Q 584 (699)
Q Consensus 584 ~ 584 (699)
.
T Consensus 424 e 424 (522)
T PF05701_consen 424 E 424 (522)
T ss_pred H
Confidence 3
No 51
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.75 E-value=0.22 Score=61.15 Aligned_cols=37 Identities=24% Similarity=0.311 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 547 RYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL 583 (699)
Q Consensus 547 rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a 583 (699)
+|+.|.-....++.+|+...++..-|..+++..+.-.
T Consensus 1711 ~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I 1747 (1758)
T KOG0994|consen 1711 RLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHI 1747 (1758)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 7888888888888999999999888888888876543
No 52
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.69 E-value=0.27 Score=59.91 Aligned_cols=119 Identities=18% Similarity=0.259 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 005378 283 SRLQEYKSENAQLEELLVAE---RELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQA 359 (699)
Q Consensus 283 K~~~ELkke~aqLEe~l~el---qek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL 359 (699)
+.+...+++.+++|+.+..+ ..+++.|.+++.-.+.+|......+.+-+. . ..-+.+..+..++..+++++
T Consensus 684 ~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~--~----~~~~~~~~~~e~v~e~~~~I 757 (1174)
T KOG0933|consen 684 KELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEF--H----KLLDDLKELLEEVEESEQQI 757 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChH--h----hHHHHHHHHHHHHHHHHHHH
Confidence 34455566677788777765 447778888888888887776665555332 1 13344556666666666666
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhh----hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 360 ALSEGNLASLQMNMESIMRNREL----TETRMIQALREELASVERRAEEERAA 408 (699)
Q Consensus 360 ~r~k~rLeelq~E~~~L~e~~s~----~Eke~lqSLE~eLkslQ~aLe~E~~a 408 (699)
......+-+++.....|-.+..+ .+.+ +..++.+|+.+.++++.....
T Consensus 758 ke~~~~~k~~~~~i~~lE~~~~d~~~~re~r-lkdl~keik~~k~~~e~~~~~ 809 (1174)
T KOG0933|consen 758 KEKERALKKCEDKISTLEKKMKDAKANRERR-LKDLEKEIKTAKQRAEESSKE 809 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhHhH-HHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666665555444443 3555 777888888888888765444
No 53
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.68 E-value=8.8e-06 Score=97.94 Aligned_cols=128 Identities=23% Similarity=0.266 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMERE 420 (699)
Q Consensus 341 k~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re 420 (699)
+..++.+++..++.-...-..+...+..++.++..|...+.+.... +..++..|..++..+..-+..+. .++..|.
T Consensus 241 L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~-k~~l~~qlsk~~~El~~~k~K~e---~e~~~~~ 316 (859)
T PF01576_consen 241 LESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEA-KSELERQLSKLNAELEQWKKKYE---EEAEQRT 316 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHHhhHHHHHHHHHH---HHhhhhH
Confidence 4445555555555554444555555555555555555555443222 44444444444433332222211 1222244
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 005378 421 VELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDM 472 (699)
Q Consensus 421 ~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~ 472 (699)
..+|+.+--+..-|..++..+.+....+..|++...-|..++..++-+|+..
T Consensus 317 EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~ 368 (859)
T PF01576_consen 317 EELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKA 368 (859)
T ss_dssp ----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555444444555555555555555555555444444444444444333
No 54
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.66 E-value=0.29 Score=59.54 Aligned_cols=64 Identities=14% Similarity=0.158 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005378 389 QALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVA 456 (699)
Q Consensus 389 qSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~s 456 (699)
..|..+...++.++.+.... ..+.-.+...+..|+..+-.+....++.+.+...+..++.+.++
T Consensus 411 KnLs~k~e~Leeri~ql~qq----~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls 474 (1195)
T KOG4643|consen 411 KNLSKKHEILEERINQLLQQ----LAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLS 474 (1195)
T ss_pred HhHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHH
Confidence 34444444455444443332 44445567777777877777888888777777666555555443
No 55
>PRK11637 AmiB activator; Provisional
Probab=97.65 E-value=0.072 Score=59.68 Aligned_cols=31 Identities=23% Similarity=0.202 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 342 NSEIETLVSSIDALKKQAALSEGNLASLQMN 372 (699)
Q Consensus 342 ~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E 372 (699)
+.+|..++.+|..++.++...+..+...+..
T Consensus 95 ~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~ 125 (428)
T PRK11637 95 QNTLNQLNKQIDELNASIAKLEQQQAAQERL 125 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 56
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.62 E-value=0.27 Score=58.01 Aligned_cols=132 Identities=24% Similarity=0.275 Sum_probs=74.0
Q ss_pred hHHHHHHHHHhhhhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 252 QLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVE 331 (699)
Q Consensus 252 QLeE~n~~LrsE~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~e 331 (699)
||.+....|..|-++ .+..|+.-.+-|+-.+.++-+.+..+.+.....-.++..|+..|..++.......
T Consensus 1 ql~e~l~qlq~Erd~----------ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~ 70 (617)
T PF15070_consen 1 QLMESLKQLQAERDQ----------YAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPP 70 (617)
T ss_pred ChHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 456666777777665 5667777777777777777777776666555566667777777776665554322
Q ss_pred HHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHH
Q 005378 332 SNLAEALAAKNSEIE-TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELAS 397 (699)
Q Consensus 332 s~~~eaLaak~sEi~-eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLks 397 (699)
. ..-.+.-++-+ .|+..+..|..++..+..++.....++..|..-....+.+ +..++..|..
T Consensus 71 ~---~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEer-L~ELE~~le~ 133 (617)
T PF15070_consen 71 P---PEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEER-LAELEEELER 133 (617)
T ss_pred C---ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 1 00011122221 4555666666666666666666555666554433333333 3333333333
No 57
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.60 E-value=0.016 Score=56.14 Aligned_cols=139 Identities=20% Similarity=0.249 Sum_probs=115.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 339 AAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAME 418 (699)
Q Consensus 339 aak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~ 418 (699)
.++..+......|.+.++..++.+..+......+..+|..+...++.+ +..++..|..++..++.- ..+...-..+..
T Consensus 3 ~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~e-ld~~~~~l~~~k~~lee~-~~~~~~~E~l~r 80 (143)
T PF12718_consen 3 QALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEE-LDKLEEQLKEAKEKLEES-EKRKSNAEQLNR 80 (143)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhH-HHHHHhHHHHHh
Confidence 345666777888999999999999999999999999999999999999 999999999999888653 222222235556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Q 005378 419 REVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRG 479 (699)
Q Consensus 419 Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~ 479 (699)
|...||++-......|.....+|.+--.++..+++++..|+.....+-.++..+..++...
T Consensus 81 riq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~ 141 (143)
T PF12718_consen 81 RIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKEA 141 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 6788888888888899999999999999999999999999999999999998888776643
No 58
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.55 E-value=0.17 Score=57.87 Aligned_cols=59 Identities=15% Similarity=0.228 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005378 345 IETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEE 404 (699)
Q Consensus 345 i~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~ 404 (699)
+..++..++.+..++...+..+..++.++..+.....+.+.. +..++..+..++..++.
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~-L~~l~~~~~~~~~~l~~ 273 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAA-LNKLNTAAAKIKSKIEQ 273 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444443333 44444444444444433
No 59
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.52 E-value=0.24 Score=60.87 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 005378 436 RIQRIADERTAKAGELEQKVAMLEVEC 462 (699)
Q Consensus 436 ~lQrkL~EEk~ra~eLeqQ~smLe~dl 462 (699)
.+++.+.+-+.+++.+++++.-++...
T Consensus 362 ~~~n~i~~~k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 362 EIENSIRKLKKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555444443
No 60
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=97.52 E-value=0.087 Score=57.01 Aligned_cols=205 Identities=17% Similarity=0.200 Sum_probs=120.3
Q ss_pred hhHHHHHHHHHhhhhccchH-HHHHHHHHhhhhhHHHHHHHHHHHHHH--------HHHHHHHHhHHHHHHHHHHHHHHH
Q 005378 251 DQLDEAQGLLKTTISTGQSK-EARLARVCAGLSSRLQEYKSENAQLEE--------LLVAERELSRSYEARIKQLEQELS 321 (699)
Q Consensus 251 kQLeE~n~~LrsE~etl~~k-e~qLa~~~aRLrK~~~ELkke~aqLEe--------~l~elqek~~~Lq~kl~qLQ~EL~ 321 (699)
+-|.+.+..||...-.++++ |..=--....|=|.++.++++...|-. +...|.-++..|+.....|+..|.
T Consensus 51 ~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le 130 (310)
T PF09755_consen 51 KHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLE 130 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666664444444 222233556667777777777766632 222334455555555555555555
Q ss_pred HHHHHH-HHHHH----------HHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHhhhh-------
Q 005378 322 VYKSEV-TKVES----------NLAEALAAKNSEIETLVSSID-ALKKQAALSEGNLASLQMNMESIMRNREL------- 382 (699)
Q Consensus 322 ~eQ~er-~q~es----------~~~eaLaak~sEi~eLe~RL~-~LeqeL~r~k~rLeelq~E~~~L~e~~s~------- 382 (699)
.+|... ..+.. .+...|..+..+.=+|++-|. .-+--+.++-.+.+++..+++.|+..+..
T Consensus 131 ~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s 210 (310)
T PF09755_consen 131 QEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPS 210 (310)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCC
Confidence 555332 11111 112222333333334444442 22223677778889999999998888773
Q ss_pred ----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 383 ----------------TETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTA 446 (699)
Q Consensus 383 ----------------~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ 446 (699)
.... +..|+.+...|.+.+..-...|..-...+..-+..+-++| ..++++|.-+..
T Consensus 211 ~~d~~~~~~~~Dt~e~~~sh-I~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~eek~ireEN-------~rLqr~L~~E~e 282 (310)
T PF09755_consen 211 PRDTVNVSEENDTAERLSSH-IRSLRQEVSRLRQQLAASQQEHSEKMAQYLQEEKEIREEN-------RRLQRKLQREVE 282 (310)
T ss_pred cchHHhhcccCCchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 1223 4456666667777776666666555555555566666666 578999999999
Q ss_pred HHHHHHHHHhhhHHHHH
Q 005378 447 KAGELEQKVAMLEVECA 463 (699)
Q Consensus 447 ra~eLeqQ~smLe~dl~ 463 (699)
++..|.++++..+..++
T Consensus 283 rreal~R~lsesEsslE 299 (310)
T PF09755_consen 283 RREALCRHLSESESSLE 299 (310)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999998777664
No 61
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.40 E-value=0.63 Score=56.89 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=20.9
Q ss_pred HHHHHHhHHhhhhHhHhHHhhcchhHHHHHHHH
Q 005378 628 QLQKAAKLLDSGAVRATRFLWRYPIARIILLFY 660 (699)
Q Consensus 628 rvk~A~~~lDs~slr~g~fLRRyP~aRl~~l~Y 660 (699)
.++..+..||...-..-..=|+.---+++-||-
T Consensus 1012 kI~ktI~~lDe~k~~~L~kaw~~VN~dFG~IFs 1044 (1174)
T KOG0933|consen 1012 KIKKTIEKLDEKKREELNKAWEKVNKDFGSIFS 1044 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 567777788877666666556555555554443
No 62
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.36 E-value=0.2 Score=57.22 Aligned_cols=9 Identities=33% Similarity=0.571 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 005378 515 LEAEVQKMR 523 (699)
Q Consensus 515 lE~elqkLr 523 (699)
++.++..+.
T Consensus 384 l~~~l~~~~ 392 (562)
T PHA02562 384 LQDELDKIV 392 (562)
T ss_pred HHHHHHHHH
Confidence 333333333
No 63
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.33 E-value=0.83 Score=56.70 Aligned_cols=46 Identities=24% Similarity=0.301 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 542 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ 587 (699)
Q Consensus 542 ~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~~~~ 587 (699)
..++.-|..+..++.++-+.++.+..+-..+..+|-.+..++.+..
T Consensus 545 ~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~k 590 (1293)
T KOG0996|consen 545 DDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAK 590 (1293)
T ss_pred HHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666777777778888888887777777777777666554
No 64
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.30 E-value=5.5e-05 Score=91.24 Aligned_cols=153 Identities=24% Similarity=0.352 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCChhHH------HHHHHHHHHHHHHHHHhH
Q 005378 432 MALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEA------NQAIQAWQDEVERARQGQ 505 (699)
Q Consensus 432 eALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~qqk~~~~~------~qei~~leeEl~r~r~~~ 505 (699)
++-..++++|.+-...+.++...+..|+-....|..+++|+...+.+.......+- .+.+..|+..+..+....
T Consensus 321 eaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~ 400 (859)
T PF01576_consen 321 EAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAER 400 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555666666666777777777777777777766666553322211 112334444443333333
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 506 RDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE 585 (699)
Q Consensus 506 ~~le~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~~ 585 (699)
..++.....++.++.+|+.++..+..+++..- -....|...|..|++.+..-...+..|...+..|..+++.+...+++
T Consensus 401 d~~q~e~r~~~te~~~Lk~~lee~~e~~e~le-re~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE 479 (859)
T PF01576_consen 401 DAAQREARELETELFKLKNELEELQEQLEELE-RENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEE 479 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555667777777777666665544321 12455566677777776665544444444444444444444333333
No 65
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.52 Score=54.39 Aligned_cols=86 Identities=14% Similarity=0.151 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHR 426 (699)
Q Consensus 347 eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEee 426 (699)
..-.+|-.|+.+++..+..|..+++++.++...+++.-.. .+.++.+ ..+|.-|...|+--...++.-+.+||++
T Consensus 104 ~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~-~~~~E~q----R~rlr~elKe~KfRE~RllseYSELEEE 178 (772)
T KOG0999|consen 104 YYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKES-NAAVEDQ----RRRLRDELKEYKFREARLLSEYSELEEE 178 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-chhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445888899999999999999999999999888775222 4444433 2344556677777777778889999999
Q ss_pred HHHHHHHHHHH
Q 005378 427 AAEASMALARI 437 (699)
Q Consensus 427 naelseALa~l 437 (699)
|..|-+.++.+
T Consensus 179 NIsLQKqVs~L 189 (772)
T KOG0999|consen 179 NISLQKQVSNL 189 (772)
T ss_pred cchHHHHHHHH
Confidence 96665554433
No 66
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.29 E-value=0.25 Score=55.57 Aligned_cols=88 Identities=20% Similarity=0.323 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 005378 283 SRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALS 362 (699)
Q Consensus 283 K~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~ 362 (699)
+++...++++++++..+.+-++....|+..+..++.++..+..++.....+ +...+..|+++..+|..++.+-...
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~----l~~~~~~I~~~~~~l~~l~~q~r~q 113 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADD----LKKLRKQIADLNARLNALEVQEREQ 113 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 334444444455555444444455555555555555555555444443332 2234455555555555555555444
Q ss_pred HHHHHHHHHHHH
Q 005378 363 EGNLASLQMNME 374 (699)
Q Consensus 363 k~rLeelq~E~~ 374 (699)
+..|++.-.-..
T Consensus 114 r~~La~~L~A~~ 125 (420)
T COG4942 114 RRRLAEQLAALQ 125 (420)
T ss_pred HHHHHHHHHHHH
Confidence 445554444433
No 67
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.28 E-value=0.052 Score=52.70 Aligned_cols=121 Identities=21% Similarity=0.290 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 005378 284 RLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSE 363 (699)
Q Consensus 284 ~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k 363 (699)
.+-.+--.+.++|..+..|+-++..|+..+..++..|...+..+..... .......|..||+-|+.+|....
T Consensus 22 ~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~--------~~~~~E~l~rriq~LEeele~ae 93 (143)
T PF12718_consen 22 KVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK--------RKSNAEQLNRRIQLLEEELEEAE 93 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--------HHHhHHHHHhhHHHHHHHHHHHH
Confidence 3333444445555555555555555555555555555554444444332 22344489999999999999999
Q ss_pred HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 364 GNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATK 413 (699)
Q Consensus 364 ~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk 413 (699)
.+|..+..-++.+.......+.. ...|+.+....+.+++.-...|..++
T Consensus 94 ~~L~e~~ekl~e~d~~ae~~eRk-v~~le~~~~~~E~k~eel~~k~~~~k 142 (143)
T PF12718_consen 94 KKLKETTEKLREADVKAEHFERK-VKALEQERDQWEEKYEELEEKYKEAK 142 (143)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999988 89999999999999988888777664
No 68
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.26 E-value=0.87 Score=55.59 Aligned_cols=53 Identities=13% Similarity=0.164 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005378 351 SIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEE 404 (699)
Q Consensus 351 RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~ 404 (699)
++..+..++..++..|.-+..+++++..+-+..-+. +-.|+-.+++++...+.
T Consensus 266 ~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~-kt~lel~~kdlq~~i~~ 318 (1200)
T KOG0964|consen 266 ESEDLKCEIKELENKLTNLREEKEQLKARETKISKK-KTKLELKIKDLQDQITG 318 (1200)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhhHHHHHHhhh
Confidence 334444444555555555555555555555554444 55566666666665554
No 69
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.25 E-value=6.7e-05 Score=88.81 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHH
Q 005378 447 KAGELEQKVAMLEVECATLQQELQDM 472 (699)
Q Consensus 447 ra~eLeqQ~smLe~dl~qLkQeLqd~ 472 (699)
++..++.++..++.....|..++...
T Consensus 299 ~~E~~~~el~~lq~e~~~Le~el~sW 324 (722)
T PF05557_consen 299 RLEELEEELAELQLENEKLEDELNSW 324 (722)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555433
No 70
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.31 Score=56.16 Aligned_cols=192 Identities=24% Similarity=0.255 Sum_probs=121.0
Q ss_pred HHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 371 MNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGE 450 (699)
Q Consensus 371 ~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~e 450 (699)
+++..|+....+++.. ..+.+.+|..++.++.+=...|+.+-..-..|+..|-++- -.+-..
T Consensus 43 eeK~~Lkqq~eEleae-yd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqES-----------------aakE~~ 104 (772)
T KOG0999|consen 43 EEKEDLKQQLEELEAE-YDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQES-----------------AAKEEY 104 (772)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHH-----------------HHhHHH
Confidence 4566777778788888 8888899999999999888888888655555555543333 122234
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCChhHH--HH--HH--HHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHH
Q 005378 451 LEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEA--NQ--AI--QAWQDEVERARQGQRDAENKLSSLEAEVQKMRV 524 (699)
Q Consensus 451 LeqQ~smLe~dl~qLkQeLqd~e~~~~r~qqk~~~~~--~q--ei--~~leeEl~r~r~~~~~le~~l~~lE~elqkLr~ 524 (699)
.-+++-.|+.++++++++|...+...+++.+.....- ++ ++ ..|+.|+...+-.-..+=..-+.+|++.=-|.+
T Consensus 105 yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQK 184 (772)
T KOG0999|consen 105 YLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQK 184 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 4556666788888888888888888887765433321 11 11 344555543221101112344678888888888
Q ss_pred HHHHHHH-hhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 525 EMAAMKR-DAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 586 (699)
Q Consensus 525 e~~~lq~-qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~~~ 586 (699)
++..++. |.+ ---++--|+.|+++..--..++|+...=|.--..|||-++-.+..+
T Consensus 185 qVs~LR~sQVE------yEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~E 241 (772)
T KOG0999|consen 185 QVSNLRQSQVE------YEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQE 241 (772)
T ss_pred HHHHHhhhhhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 8887773 221 1234556677777777767777777666666666776665544443
No 71
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.23 E-value=0.84 Score=54.73 Aligned_cols=163 Identities=18% Similarity=0.243 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--HhhccCChh------------
Q 005378 420 EVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARL--KRGQKKSPE------------ 485 (699)
Q Consensus 420 e~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~--~r~qqk~~~------------ 485 (699)
+..+|.++..|...|...|..|+.-+..+.....++..|-..+..++.-...-+... .........
T Consensus 274 L~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d~~~ye~Di~~ 353 (717)
T PF09730_consen 274 LLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHEDGDYYEVDING 353 (717)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcccccccccccchhhhcccc
Confidence 445688888888889899998888887777777777777666666655111111110 000000000
Q ss_pred ---------HHHHHHHHHHHHHHHHHHhHHHHH----HhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHH
Q 005378 486 ---------EANQAIQAWQDEVERARQGQRDAE----NKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELT 552 (699)
Q Consensus 486 ---------~~~qei~~leeEl~r~r~~~~~le----~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLt 552 (699)
.+..++..|+.|+..++.....++ ......+.+++.|..++..+..... ........|+..++.++
T Consensus 354 ~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~r-e~qeri~~LE~ELr~l~ 432 (717)
T PF09730_consen 354 LEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSR-EDQERISELEKELRALS 432 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHH
Confidence 011134556666655544332222 2222334445555555433332111 11234678888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 553 DLLYYKQTQLETMASEKAAAEFQLEKEMNRL 583 (699)
Q Consensus 553 e~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a 583 (699)
...-+.+..|-....|..+..-.|-.+-...
T Consensus 433 ~~A~E~q~~LnsAQDELvtfSEeLAqLYHHV 463 (717)
T PF09730_consen 433 KLAGESQGSLNSAQDELVTFSEELAQLYHHV 463 (717)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887777777776654443
No 72
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.15 E-value=0.98 Score=53.99 Aligned_cols=161 Identities=10% Similarity=0.147 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 359 AALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQ 438 (699)
Q Consensus 359 L~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQ 438 (699)
++--+.+..++.+.+.+=++.+-- .+.-+..++.+|.+|.-.+.+ .-- |+.+..--...--++|..+.
T Consensus 411 lewErar~qem~~Qk~reqe~iv~-~nak~~ql~~eletLn~k~qq-------ls~----kl~Dvr~~~tt~kt~ie~~~ 478 (1118)
T KOG1029|consen 411 LEWERARRQEMLNQKNREQEWIVY-LNAKKKQLQQELETLNFKLQQ-------LSG----KLQDVRVDITTQKTEIEEVT 478 (1118)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-------Hhh----hhhhheeccchHHHHHHHhh
Confidence 444455556666655554444432 222244555555555543322 222 33222222222234455555
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCChhHHHH--HH--HHHHHHH--HHHHHhHHHHHHhh
Q 005378 439 RIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQ--AI--QAWQDEV--ERARQGQRDAENKL 512 (699)
Q Consensus 439 rkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~qqk~~~~~~q--ei--~~leeEl--~r~r~~~~~le~~l 512 (699)
...+-...+.++|..+++.+...+-.|-.+-+.+..++.+.+....+...+ ++ .....|+ .++++....++.+.
T Consensus 479 ~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~ 558 (1118)
T KOG1029|consen 479 KQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKET 558 (1118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666777888888888888888888888777877777776554443332 12 1122222 13344444444555
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 005378 513 SSLEAEVQKMRVEMAAMKR 531 (699)
Q Consensus 513 ~~lE~elqkLr~e~~~lq~ 531 (699)
.+.-.++.-+..++++++.
T Consensus 559 esk~~eidi~n~qlkelk~ 577 (1118)
T KOG1029|consen 559 ESKLNEIDIFNNQLKELKE 577 (1118)
T ss_pred HHHHHhhhhHHHHHHHHHH
Confidence 5555556666666666664
No 73
>PRK09039 hypothetical protein; Validated
Probab=97.14 E-value=0.13 Score=56.38 Aligned_cols=121 Identities=20% Similarity=0.228 Sum_probs=91.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 005378 277 VCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALK 356 (699)
Q Consensus 277 ~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~Le 356 (699)
...++++.+.++..+++.|=+.+.-.+.+...++..+..|+.++...+..+..++..+. .+......++.++..+.
T Consensus 47 ~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~----~~~~~~~~~~~~~~~l~ 122 (343)
T PRK09039 47 EISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA----ELAGAGAAAEGRAGELA 122 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhhcchHHHHHHHHH
Confidence 34455666666666666666666666777788888888888888888877777666333 34455668888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHH
Q 005378 357 KQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRA 402 (699)
Q Consensus 357 qeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aL 402 (699)
.+|...+...++..-+...|...+..+..+ +++++..|..++.+.
T Consensus 123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q-la~le~~L~~ae~~~ 167 (343)
T PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQ-LAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 889999998888888888888888888877 777777777776555
No 74
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.08 E-value=0.99 Score=52.71 Aligned_cols=146 Identities=16% Similarity=0.228 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhHHH
Q 005378 388 IQALREELASVERRAEEERAAHNATKM---AAMEREVELEHRAAEASMALARIQRIAD---ERTAKAGELEQKVAMLEVE 461 (699)
Q Consensus 388 lqSLE~eLkslQ~aLe~E~~aHk~Tk~---ea~~Re~~LEeenaelseALa~lQrkL~---EEk~ra~eLeqQ~smLe~d 461 (699)
+..+..+|..+=..++.|..+++.... .....+..+...+..+..-+..+...+. .+...+..+..++..+...
T Consensus 280 ~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~ 359 (560)
T PF06160_consen 280 NEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKR 359 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 555556666666667777666555532 2222233334444444444444433321 2334555666666666666
Q ss_pred HHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh
Q 005378 462 CATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAE 534 (699)
Q Consensus 462 l~qLkQeLqd~e~~~~r~qqk~~~~~~qei~~leeEl~r~r~~~~~le~~l~~lE~elqkLr~e~~~lq~qle 534 (699)
+..+.+.+.+-..-...+... .......+..++.+..........+...=......+.+++..+..+++.++
T Consensus 360 ~~~~~~~i~~~~~~yS~i~~~-l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~le 431 (560)
T PF06160_consen 360 YEDLEERIEEQQVPYSEIQEE-LEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLE 431 (560)
T ss_pred HHHHHHHHHcCCcCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555553221111111100 000011112222222222222222222222445567777777777777777
No 75
>PRK11281 hypothetical protein; Provisional
Probab=97.07 E-value=1.6 Score=54.96 Aligned_cols=35 Identities=23% Similarity=0.174 Sum_probs=16.7
Q ss_pred hHHhhhhHhHhHHhhc----chhHHHHHHHHHHHHHHHH
Q 005378 634 KLLDSGAVRATRFLWR----YPIARIILLFYLVFVHLFL 668 (699)
Q Consensus 634 ~~lDs~slr~g~fLRR----yP~aRl~~l~Y~vlLHlWV 668 (699)
..++.++-++|.+-+- -|.|=+|.++|.+.+-||+
T Consensus 522 ~~l~~~~~~ig~~~~D~~~~T~~al~~t~l~alp~~l~~ 560 (1113)
T PRK11281 522 ARLQKLAADIGTLKRDSQLHTPKAILITLLLALPVTLIF 560 (1113)
T ss_pred HHHHHHHHhcCCcccCcccccHHHHHHHHHHHHHHHHHH
Confidence 4556565555554322 3444444555444334333
No 76
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.05 E-value=0.86 Score=51.47 Aligned_cols=72 Identities=17% Similarity=0.225 Sum_probs=41.9
Q ss_pred CCchhhhhHHHHHHHHHhhhhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005378 245 PPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK 324 (699)
Q Consensus 245 k~~~lqkQLeE~n~~LrsE~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ 324 (699)
...+.++.+++.+..++...+ -...|.+.+..+..++.+++..+.+....+..++..+..+...|..++
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~~-----------~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQD-----------QRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 344444455555544444444 266666666666666666666666666666666666666666666555
Q ss_pred HHH
Q 005378 325 SEV 327 (699)
Q Consensus 325 ~er 327 (699)
.+.
T Consensus 108 ~q~ 110 (420)
T COG4942 108 VQE 110 (420)
T ss_pred HHH
Confidence 554
No 77
>PF13514 AAA_27: AAA domain
Probab=96.99 E-value=1.3 Score=55.70 Aligned_cols=40 Identities=23% Similarity=0.264 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 541 HMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM 580 (699)
Q Consensus 541 ~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~ 580 (699)
-..+..+..++...+...+..++.+..+...+..++..+.
T Consensus 454 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 493 (1111)
T PF13514_consen 454 VEAFRAEFEELERQLRRARDRLEELEEELARLEARLRRLA 493 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666677777777666666666653
No 78
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.96 E-value=0.21 Score=52.53 Aligned_cols=130 Identities=25% Similarity=0.307 Sum_probs=78.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 005378 272 ARLARVCAGLSSRLQEYKSENAQLEELLVAERE---LSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETL 348 (699)
Q Consensus 272 ~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqe---k~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eL 348 (699)
.++.++..+.+....+|.+..+.++..+..+.+ ....+++++.+++.++...+......+..+. -.....++..|
T Consensus 17 ~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~--~v~~~~e~~aL 94 (239)
T COG1579 17 LEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLS--AVKDERELRAL 94 (239)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccHHHHHHH
Confidence 344567888888888888888888888776544 4557777888888888888777777666442 12233344555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005378 349 VSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEE 404 (699)
Q Consensus 349 e~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~ 404 (699)
...++.++.....+...+..+..+...+...+..+..+ +..++..+..++.+++.
T Consensus 95 ~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~-~~~~e~~~~e~~~~~e~ 149 (239)
T COG1579 95 NIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKER-LERLEKNLAEAEARLEE 149 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 55555555555555555544444444444444444333 44444444444444443
No 79
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.96 E-value=1.6 Score=53.08 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 005378 345 IETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (699)
Q Consensus 345 i~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~ 382 (699)
.+..+.|.+.|+.++..++++++++..+++=|+.+..+
T Consensus 320 KEmAEERaesLQ~eve~lkEr~deletdlEILKaEmee 357 (1243)
T KOG0971|consen 320 KEMAEERAESLQQEVEALKERVDELETDLEILKAEMEE 357 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445567777777777777777777777777666655
No 80
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.96 E-value=0.47 Score=55.82 Aligned_cols=135 Identities=13% Similarity=0.236 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 005378 433 ALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQGQRDAENKL 512 (699)
Q Consensus 433 ALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~qqk~~~~~~qei~~leeEl~r~r~~~~~le~~l 512 (699)
.|..++..++...+++..|..|+......+.. ++..++....... .+....-.++..++...+.+...+
T Consensus 395 ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~---e~r~lk~~~~~~~--------~e~~~~~~~ik~~r~~~k~~~~e~ 463 (594)
T PF05667_consen 395 NIAKLQALVEASEQRLVELAQQWEKHRAPLIE---EYRRLKEKASNRE--------SESKQKLQEIKELREEIKEIEEEI 463 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHhhcc--------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666777777776654433322 2211221111000 011222234444444444555666
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 513 SSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQ 584 (699)
Q Consensus 513 ~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~ 584 (699)
...++...+|..++..+-.+ .+-.-|=.||.+.+-.+---++.|+.+..+-..|+.++..+..+++
T Consensus 464 ~~Kee~~~qL~~e~e~~~k~------~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~ 529 (594)
T PF05667_consen 464 RQKEELYKQLVKELEKLPKD------VNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLD 529 (594)
T ss_pred HHHHHHHHHHHHHHHhCCCC------CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777778887777654432 3356788899999887543336777666666555555555555443
No 81
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.87 E-value=1.9 Score=52.78 Aligned_cols=191 Identities=21% Similarity=0.232 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 005378 287 EYKSENAQLEELLVAERELSRSYEARIKQLE--QELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEG 364 (699)
Q Consensus 287 ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ--~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~ 364 (699)
|-.....++..++..+.++++.|+.+...|. .+|+..+..+... -|...+...++++..|......+-++-.....
T Consensus 181 ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYt--iYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~ 258 (1200)
T KOG0964|consen 181 ETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYT--IYDRELNEINGELERLEEDRSSAPEESEQYID 258 (1200)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhh--hhhhHHHHHHHHHHHHHHHHhccchhhhhHHH
Confidence 3444566677777777777777777665554 3455555544442 34445556677777888777777777888888
Q ss_pred HHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 365 NLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKM-----AAMEREVELEHRAAEASMALARIQR 439 (699)
Q Consensus 365 rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~-----ea~~Re~~LEeenaelseALa~lQr 439 (699)
++.+++.++..+...+.++++. +..|..+..+++.+.-.-... -|+. .+..+...-++.+......+..+..
T Consensus 259 ~~~~~~d~~~~~~~~i~ele~~-l~~l~~ekeq~~a~~t~~~k~--kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ 335 (1200)
T KOG0964|consen 259 ALDKVEDESEDLKCEIKELENK-LTNLREEKEQLKARETKISKK--KTKLELKIKDLQDQITGNEQQRNLALHVLQKVKD 335 (1200)
T ss_pred HHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH--hhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHH
Confidence 9999999999999999998888 888887766666442111111 1111 1111111112222233445556666
Q ss_pred HHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHhhccC
Q 005378 440 IADERTAKAGELEQKVAM-------LEVECATLQQELQDMEARLKRGQKK 482 (699)
Q Consensus 440 kL~EEk~ra~eLeqQ~sm-------Le~dl~qLkQeLqd~e~~~~r~qqk 482 (699)
++.+...+.....-.... +...+..|+++..++-.+.-+..+.
T Consensus 336 ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqF 385 (1200)
T KOG0964|consen 336 KIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQF 385 (1200)
T ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 666666666555444444 4444444555444444444444333
No 82
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.86 E-value=1.9 Score=52.38 Aligned_cols=103 Identities=18% Similarity=0.254 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 345 IETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELE 424 (699)
Q Consensus 345 i~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LE 424 (699)
+++++......+.+...++..++++..+---|.++..+..++ +.+.+.+.. +++
T Consensus 412 ~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQ--------le~~~~s~~------------------~~~ 465 (980)
T KOG0980|consen 412 VEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQ--------LESAEQSID------------------DVE 465 (980)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhHH------------------HHH
Confidence 556666666666666666776666666666666555555555 333332221 445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 005378 425 HRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDME 473 (699)
Q Consensus 425 eenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e 473 (699)
+++.++..-|.++++....--.+..+..+.++.++.++..+.-+++.++
T Consensus 466 ~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq 514 (980)
T KOG0980|consen 466 EENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQ 514 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5565566555555555544444444455544445555555444444443
No 83
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.85 E-value=0.00094 Score=79.25 Aligned_cols=43 Identities=21% Similarity=0.336 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 005378 312 RIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDAL 355 (699)
Q Consensus 312 kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~L 355 (699)
++..|+.++..++.++..+.. ......-+..+...|+.++..+
T Consensus 258 ~i~~LE~en~~l~~Elk~Lr~-~~~n~elLeEe~~sLq~kl~~~ 300 (722)
T PF05557_consen 258 HIRELEKENRRLREELKHLRQ-SQENVELLEEEKRSLQRKLERL 300 (722)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHH
Confidence 355556666665555555544 2323334455555555555444
No 84
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.84 E-value=2.2 Score=52.90 Aligned_cols=60 Identities=17% Similarity=0.304 Sum_probs=28.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHh--hhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 510 NKLSSLEAEVQKMRVEMAAMKRD--AEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEK 569 (699)
Q Consensus 510 ~~l~~lE~elqkLr~e~~~lq~q--leq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er 569 (699)
..+...+..+.+.+.+|.+++.- ..+.....--++...+....+++.++-..++.+..+.
T Consensus 703 ~~~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~ 764 (1074)
T KOG0250|consen 703 EHIEQIKRRIRKKRAEMTELKNTAEEKQVDISKLEDLAREIKKKEKEIEEKEAPLEKLKEEL 764 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555556666666652 1122222233444455555555555544444444433
No 85
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=96.78 E-value=1.1 Score=48.72 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Q 005378 446 AKAGELEQKVAMLEVECATLQQEL 469 (699)
Q Consensus 446 ~ra~eLeqQ~smLe~dl~qLkQeL 469 (699)
.-+.-|.+++.-|..+-+.|+.+|
T Consensus 178 ~lvN~L~Kqm~~l~~eKr~Lq~~l 201 (310)
T PF09755_consen 178 ALVNRLWKQMDKLEAEKRRLQEKL 201 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888887877777776665
No 86
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.73 E-value=0.6 Score=47.66 Aligned_cols=39 Identities=26% Similarity=0.329 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 005378 435 ARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDME 473 (699)
Q Consensus 435 a~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e 473 (699)
....+.+..++.+..++...+..+..++..|++.|.+.+
T Consensus 153 k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKe 191 (194)
T PF15619_consen 153 KSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKE 191 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666777777777777777777777765543
No 87
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.70 E-value=2.8 Score=52.24 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=17.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005378 279 AGLSSRLQEYKSENAQLEELLVAERELSRSYEA 311 (699)
Q Consensus 279 aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~ 311 (699)
.+-++........+.|.|+.+++++.....+.+
T Consensus 1450 ~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~ 1482 (1758)
T KOG0994|consen 1450 QSAQRALEQANASRSQMEESNRELRNLIQQVRD 1482 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555566666666666555444333
No 88
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.70 E-value=0.89 Score=46.52 Aligned_cols=179 Identities=21% Similarity=0.307 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREV 421 (699)
Q Consensus 342 ~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~ 421 (699)
.++++.|..||+.++.++.+...++..++.-+..+.......+.. + +.+.++..
T Consensus 3 e~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~-~-------Kv~enr~~------------------ 56 (205)
T KOG1003|consen 3 EADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERG-M-------KVIENRAQ------------------ 56 (205)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHH-H-------HHHHHHHH------------------
Confidence 455667777788888888877777777777777777666666665 2 22222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHH
Q 005378 422 ELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVERA 501 (699)
Q Consensus 422 ~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~qqk~~~~~~qei~~leeEl~r~ 501 (699)
++|+.--.+..-++.+.-...+--+++.+.-.++.+.+.+|+..-. ++
T Consensus 57 kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~ee-------ra------------------------- 104 (205)
T KOG1003|consen 57 KLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEE-------RA------------------------- 104 (205)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HH-------------------------
Confidence 1111111111222333333333335566666666666666654211 11
Q ss_pred HHhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 502 RQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMN 581 (699)
Q Consensus 502 r~~~~~le~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~ 581 (699)
+..+.++..++.++..+...++.+...-+.|+ +..-.|+..|+.|++.|-+--+..+-...-...|....+++.-
T Consensus 105 ----E~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~-q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~ 179 (205)
T KOG1003|consen 105 ----EAAESQSEELEEDLRILDSNLKSLSAKEEKLE-QKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEE 179 (205)
T ss_pred ----HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHH
Confidence 12234444556666666666655554444443 5678899999999998887776666665555555555555544
Q ss_pred HH
Q 005378 582 RL 583 (699)
Q Consensus 582 ~a 583 (699)
++
T Consensus 180 kl 181 (205)
T KOG1003|consen 180 KL 181 (205)
T ss_pred hh
Confidence 33
No 89
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.66 E-value=1.5 Score=56.25 Aligned_cols=38 Identities=21% Similarity=0.150 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 544 LEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMN 581 (699)
Q Consensus 544 le~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~ 581 (699)
+..+|.++...|..-...+..+..+..++...+..+..
T Consensus 926 l~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~ 963 (1353)
T TIGR02680 926 IRARLAETRAALASGGRELPRLAEALATAEEARGRAEE 963 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444433
No 90
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.63 E-value=0.00049 Score=81.57 Aligned_cols=78 Identities=17% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 005378 302 ERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (699)
Q Consensus 302 lqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~ 380 (699)
|++.+..|-.....|+.+|.....-+.+++. |..++......+.+...+.+.+..++..++.++..++.++.++....
T Consensus 337 Lee~N~~l~e~~~~LEeel~~~~~~~~qle~-~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~ 414 (713)
T PF05622_consen 337 LEEDNAVLLETKAMLEEELKKARALKSQLEE-YKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEER 414 (713)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555666666666555444444433 44444445555555555555555566666666666666655554443
No 91
>PRK09039 hypothetical protein; Validated
Probab=96.62 E-value=0.12 Score=56.68 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHH
Q 005378 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (699)
Q Consensus 347 eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke 386 (699)
+..-.+..|++++..++.++..++.++..+.....+...+
T Consensus 134 e~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~ 173 (343)
T PRK09039 134 RALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAK 173 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444333333
No 92
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.60 E-value=2.2 Score=49.86 Aligned_cols=72 Identities=17% Similarity=0.180 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhh--cchh------hhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 005378 514 SLEAEVQKMRVEMAAMKRDAEH--YSRE------EHMELEKRYRELTDLLYYKQ-------TQLETMASEKAAAEFQLEK 578 (699)
Q Consensus 514 ~lE~elqkLr~e~~~lq~qleq--~~~~------~~~ele~rl~eLte~L~eKQ-------~qlE~L~~Er~sL~~qLE~ 578 (699)
.....+.+++..+..+++-+.. .|.. .=.....++..|...|...- ..++......+.|.-+...
T Consensus 415 eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~d 494 (569)
T PRK04778 415 EAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETEE 494 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666654441 1211 11233455555655554422 2444555555555555555
Q ss_pred HHHHHHH
Q 005378 579 EMNRLQE 585 (699)
Q Consensus 579 ~~~~a~~ 585 (699)
+...+..
T Consensus 495 L~~~a~~ 501 (569)
T PRK04778 495 LVENATL 501 (569)
T ss_pred HHHHHHH
Confidence 5444433
No 93
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.59 E-value=1 Score=45.92 Aligned_cols=120 Identities=13% Similarity=0.110 Sum_probs=67.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 005378 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEE---RAAHNATKMAAM 417 (699)
Q Consensus 341 k~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E---~~aHk~Tk~ea~ 417 (699)
+-+.+++|+.--..|..+...++..++.+...+.+|...+.++.++ ++++|+++... ..+|...|.
T Consensus 6 L~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q--------~~s~Qqal~~aK~l~eEledLk~--- 74 (193)
T PF14662_consen 6 LLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQ--------LKSLQQALQKAKALEEELEDLKT--- 74 (193)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH---
Confidence 4456777777777777778888888888888888887777776666 55555555443 334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 005378 418 EREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDM 472 (699)
Q Consensus 418 ~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~ 472 (699)
-..++|+.+..+...-..+++.-+-=..++..|+.+..-+-.+.+-++.+..++
T Consensus 75 -~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 75 -LAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 344555555444443333333333333444444444444444444444444333
No 94
>PRK01156 chromosome segregation protein; Provisional
Probab=96.57 E-value=3 Score=50.97 Aligned_cols=31 Identities=13% Similarity=0.187 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 342 NSEIETLVSSIDALKKQAALSEGNLASLQMN 372 (699)
Q Consensus 342 ~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E 372 (699)
..++..+..++..+...+...+..+.++...
T Consensus 475 ~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~ 505 (895)
T PRK01156 475 NEKKSRLEEKIREIEIEVKDIDEKIVDLKKR 505 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443333
No 95
>PRK01156 chromosome segregation protein; Provisional
Probab=96.46 E-value=3.5 Score=50.42 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=12.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHH
Q 005378 448 AGELEQKVAMLEVECATLQQELQDME 473 (699)
Q Consensus 448 a~eLeqQ~smLe~dl~qLkQeLqd~e 473 (699)
..+|...+..+......++..+.++.
T Consensus 418 ~~~l~~~i~~l~~~i~~l~~~~~el~ 443 (895)
T PRK01156 418 LQDISSKVSSLNQRIRALRENLDELS 443 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444554444443
No 96
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.43 E-value=3.9 Score=50.68 Aligned_cols=40 Identities=10% Similarity=0.219 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 005378 492 QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKR 531 (699)
Q Consensus 492 ~~leeEl~r~r~~~~~le~~l~~lE~elqkLr~e~~~lq~ 531 (699)
..++..+.++-..+-.+...|...+..+.++..++..+-.
T Consensus 859 ~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL~ 898 (1141)
T KOG0018|consen 859 NEVKKILRRLVKELTKLDKEITSIESKIERKESERHNLLS 898 (1141)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 3334444443333444556777888888888888777653
No 97
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.43 E-value=1.8 Score=46.81 Aligned_cols=183 Identities=17% Similarity=0.139 Sum_probs=95.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 334 LAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATK 413 (699)
Q Consensus 334 ~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk 413 (699)
++...+--+.++.+|......|...|+.-+..=+.++++..+...++..--..-=++. .-=+.++-++.+++.+|-..+
T Consensus 54 ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq-~skrdlelafqr~rdEw~~lq 132 (305)
T PF14915_consen 54 LTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQ-TSKRDLELAFQRARDEWVRLQ 132 (305)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-hhHHHHHHHHHHHhhHHHHHH
Confidence 3334444555566666666666666666666666666666666666554322201111 112455666666667666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhH---HHHHHHHHHHHHHHHHHHhhccCChhH
Q 005378 414 MAAMEREVELEHRAAEASMALARIQRIADERTAKA----GELEQKVAMLE---VECATLQQELQDMEARLKRGQKKSPEE 486 (699)
Q Consensus 414 ~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra----~eLeqQ~smLe---~dl~qLkQeLqd~e~~~~r~qqk~~~~ 486 (699)
-.+---.+.+...|.-|+.-|..++.++.-=..+. +.|+.+--.++ .++.+.+..+.+++......+.++.--
T Consensus 133 dkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~ 212 (305)
T PF14915_consen 133 DKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKY 212 (305)
T ss_pred HHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 55455566677777778888877777765444222 33444333332 344444444444444444333332221
Q ss_pred H------HHHHHHHHHHHHHHHHhHHHHHHhhhhHHH
Q 005378 487 A------NQAIQAWQDEVERARQGQRDAENKLSSLEA 517 (699)
Q Consensus 487 ~------~qei~~leeEl~r~r~~~~~le~~l~~lE~ 517 (699)
. ..-+.+++.|-.-+++.+.++..+....+.
T Consensus 213 ~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek 249 (305)
T PF14915_consen 213 IGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEK 249 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 112355555555556655555544443343
No 98
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.41 E-value=3.6 Score=50.05 Aligned_cols=43 Identities=33% Similarity=0.356 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 287 EYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTK 329 (699)
Q Consensus 287 ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q 329 (699)
+....+++++....+.+..+-.+++++..++.++..-|....+
T Consensus 341 e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe 383 (980)
T KOG0980|consen 341 EVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQE 383 (980)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4445556667666677888889999999999888776654443
No 99
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.39 E-value=1.4 Score=48.13 Aligned_cols=35 Identities=17% Similarity=0.184 Sum_probs=14.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 337 ALAAKNSEIETLVSSIDALKKQAALSEGNLASLQM 371 (699)
Q Consensus 337 aLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~ 371 (699)
++...+.++..+...+..++.++...+..+..++.
T Consensus 145 ~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~ 179 (423)
T TIGR01843 145 QLELILAQIKQLEAELAGLQAQLQALRQQLEVISE 179 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444433
No 100
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=96.36 E-value=3.4 Score=49.15 Aligned_cols=225 Identities=18% Similarity=0.201 Sum_probs=120.2
Q ss_pred hHHHHHHHHHhhhhccchHHHHHHHHHhhhhhHH----------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005378 252 QLDEAQGLLKTTISTGQSKEARLARVCAGLSSRL----------QEYKSENAQLEELLVAERELSRSYEARIKQLEQELS 321 (699)
Q Consensus 252 QLeE~n~~LrsE~etl~~ke~qLa~~~aRLrK~~----------~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~ 321 (699)
+++++...++.|+. .||.+.+++-.++.+-. ++.+....+|++.-....+.+.....+...|.++|.
T Consensus 223 k~~~leeey~~E~n---~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~ 299 (786)
T PF05483_consen 223 KFEDLEEEYKKEVN---DKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELE 299 (786)
T ss_pred HHHHHHHHHHHHhh---hHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Confidence 34444555555543 46777777777766644 444555666666544444444333334444444444
Q ss_pred HHHHHHHHHH----------------------------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 322 VYKSEVTKVE----------------------------SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNM 373 (699)
Q Consensus 322 ~eQ~er~q~e----------------------------s~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~ 373 (699)
..+..+.... .++.....+....+.+++..+..|+.-+..-..++.+...+.
T Consensus 300 ~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~l 379 (786)
T PF05483_consen 300 DIKQSLQESESTQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQL 379 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3333332211 133444444555556677777777777766667777776666
Q ss_pred HHHhHhhhhhHHH------HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH---------------------H
Q 005378 374 ESIMRNRELTETR------MIQALREELASVERRAEEE------RAAHNATKMAAMER---------------------E 420 (699)
Q Consensus 374 ~~L~e~~s~~Eke------~lqSLE~eLkslQ~aLe~E------~~aHk~Tk~ea~~R---------------------e 420 (699)
..+.-++.....+ -.+..+-+|..|...|+.- ......+..++..+ +
T Consensus 380 k~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l 459 (786)
T PF05483_consen 380 KILTMELQKKSSELEEMTKQKNNKEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQL 459 (786)
T ss_pred HHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 6665555432111 0222223333333333221 11111111111111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Q 005378 421 VELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRG 479 (699)
Q Consensus 421 ~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~ 479 (699)
...-..++.|+..+..+...|..++.+-.+|-..+..+..+-+++.|+..++-..+...
T Consensus 460 ~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~ 518 (786)
T PF05483_consen 460 TTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQ 518 (786)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 22233457778888888888888888888887778888888888888877765554433
No 101
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.34 E-value=1.5 Score=44.82 Aligned_cols=120 Identities=22% Similarity=0.237 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 005378 354 ALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAA----- 428 (699)
Q Consensus 354 ~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeena----- 428 (699)
.++.+++.+|..+..+++++++|......++++ .++|..++.+++..-..-...+.-++. |...|-..+.
T Consensus 64 ~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE-~q~L~~~i~~Lqeen~kl~~e~~~lk~----~~~eL~~~~~~Lq~Q 138 (193)
T PF14662_consen 64 ALEEELEDLKTLAKSLEEENRSLLAQARQLEKE-QQSLVAEIETLQEENGKLLAERDGLKK----RSKELATEKATLQRQ 138 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHhhhhHHH----HHHHHHHhhHHHHHH
Confidence 345556666666666666666666666666666 666666666666554444444333333 3333322332
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q 005378 429 --EASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKR 478 (699)
Q Consensus 429 --elseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r 478 (699)
.+...+..-...+.+....+.+|...+.....--..++.++..++.++.+
T Consensus 139 l~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~q 190 (193)
T PF14662_consen 139 LCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLSQ 190 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333334444444555555544444444444555555555554443
No 102
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.26 E-value=4.1 Score=49.10 Aligned_cols=78 Identities=21% Similarity=0.267 Sum_probs=40.7
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHhhh----hcchhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 509 ENKLSSLEAEVQKMRVEMAAMKRDAE----HYSREEH-------MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLE 577 (699)
Q Consensus 509 e~~l~~lE~elqkLr~e~~~lq~qle----q~~~~~~-------~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE 577 (699)
+.++.....++..|+.+++.++..+. +| .... ..|+.++..+.....+.+..+..|..|..++..---
T Consensus 358 e~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~-~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~ 436 (717)
T PF09730_consen 358 ECKYKVAVSEVIQLKAELKALKSKYNELEERY-KQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAG 436 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 45555566667777777666653222 12 1222 334444444444444444577777777766666555
Q ss_pred HHHHHHHHHH
Q 005378 578 KEMNRLQEVQ 587 (699)
Q Consensus 578 ~~~~~a~~~~ 587 (699)
.....+..++
T Consensus 437 E~q~~LnsAQ 446 (717)
T PF09730_consen 437 ESQGSLNSAQ 446 (717)
T ss_pred hHHHHHHHHH
Confidence 5444444443
No 103
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.24 E-value=1.2 Score=43.56 Aligned_cols=99 Identities=20% Similarity=0.258 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 291 ENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQ 370 (699)
Q Consensus 291 e~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq 370 (699)
..-+++..+.+.+...+.|++++..|+++|...+..+..+.-+ ..-...++..|+..|..+...+..+...|..+.
T Consensus 4 K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~d----aEn~k~eie~L~~el~~lt~el~~L~~EL~~l~ 79 (140)
T PF10473_consen 4 KFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILD----AENSKAEIETLEEELEELTSELNQLELELDTLR 79 (140)
T ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788888889999999999999999999888876542 233566777788888888777777777777777
Q ss_pred HHHHHHhHhhhhhHHHHHHHHHHH
Q 005378 371 MNMESIMRNRELTETRMIQALREE 394 (699)
Q Consensus 371 ~E~~~L~e~~s~~Eke~lqSLE~e 394 (699)
.++..|...+.....+ +..|+..
T Consensus 80 sEk~~L~k~lq~~q~k-v~eLE~~ 102 (140)
T PF10473_consen 80 SEKENLDKELQKKQEK-VSELESL 102 (140)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHH
Confidence 7777776666655555 4444433
No 104
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.16 E-value=1.1 Score=50.86 Aligned_cols=42 Identities=21% Similarity=0.404 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005378 363 EGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEE 405 (699)
Q Consensus 363 k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E 405 (699)
+.++.+++.++..+.....+.+-. +..++.+|..++..+..+
T Consensus 253 ~~~l~~l~~~l~~l~~~y~~~hP~-v~~l~~qi~~l~~~l~~~ 294 (498)
T TIGR03007 253 DGRIEALEKQLDALRLRYTDKHPD-VIATKREIAQLEEQKEEE 294 (498)
T ss_pred HHHHHHHHHHHHHHHHHhcccChH-HHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444433 444445555555554443
No 105
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.14 E-value=3.9 Score=47.73 Aligned_cols=87 Identities=16% Similarity=0.347 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 005378 283 SRLQEYKSENAQLEELLVAERE---LSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQA 359 (699)
Q Consensus 283 K~~~ELkke~aqLEe~l~elqe---k~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL 359 (699)
..+..+++.+..|++++.+... +...|+.+...|+.++...|+-..++++-. ..+.+.|..+..++
T Consensus 235 ~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~-----------~~~~~~l~~l~~Ei 303 (581)
T KOG0995|consen 235 NEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKK-----------QHMEKKLEMLKSEI 303 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhh-----------HHHHHHHHHHHHHH
Confidence 3444555555555555443211 223555566666666666555555544311 13334444444444
Q ss_pred HHHHHHHHHHHHHHHHHhHhh
Q 005378 360 ALSEGNLASLQMNMESIMRNR 380 (699)
Q Consensus 360 ~r~k~rLeelq~E~~~L~e~~ 380 (699)
+..+...+.++.++..|+..+
T Consensus 304 e~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 304 EEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433
No 106
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.06 E-value=3.4 Score=46.30 Aligned_cols=52 Identities=13% Similarity=0.212 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHH
Q 005378 349 VSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERR 401 (699)
Q Consensus 349 e~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~a 401 (699)
..-+..+.+++.++.+....++..+..|-.....++.+ ++++...-+.||..
T Consensus 129 ~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq-~qsl~a~~k~LQ~s 180 (499)
T COG4372 129 RQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQ-AQSLQASQKQLQAS 180 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444 55555444555544
No 107
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.92 E-value=1.6 Score=41.54 Aligned_cols=110 Identities=17% Similarity=0.219 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 344 EIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVEL 423 (699)
Q Consensus 344 Ei~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~L 423 (699)
...+...++..+..++.........++..-.+=+..|....+. |..++.++..++..+..-+..-..++..+......|
T Consensus 18 ~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~-L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw 96 (132)
T PF07926_consen 18 QEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKE-LQQLREELQELQQEINELKAEAESAKAELEESEASW 96 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3335555566666666666666666666666666666666555 667776666666666554444444555555555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 005378 424 EHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVE 461 (699)
Q Consensus 424 EeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~d 461 (699)
++++..| +..+.+-..++.+|..|..+|=..
T Consensus 97 ~~qk~~l-------e~e~~~~~~r~~dL~~QN~lLh~Q 127 (132)
T PF07926_consen 97 EEQKEQL-------EKELSELEQRIEDLNEQNKLLHDQ 127 (132)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555333 344444445556666666655433
No 108
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.92 E-value=2.8 Score=44.33 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 366 LASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMA 415 (699)
Q Consensus 366 Leelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~e 415 (699)
+..+.-++..+.++...++.+ +.-+..++..++.-....+..|..++..
T Consensus 91 ~~aL~~E~~~ak~r~~~le~e-l~~l~~~~~~l~~~i~~l~~~~~~~e~~ 139 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDE-LAELMEEIEKLEKEIEDLKERLERLEKN 139 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444 3334444444444444444444444443
No 109
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.83 E-value=9.2 Score=49.44 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005378 284 RLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSV 322 (699)
Q Consensus 284 ~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~ 322 (699)
++.+|..+.+.|+..+.++.+....+..++..|..+...
T Consensus 743 ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~ 781 (1353)
T TIGR02680 743 RIAELDARLAAVDDELAELARELRALGARQRALADELAG 781 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555555555555555555555555433
No 110
>PF14992 TMCO5: TMCO5 family
Probab=95.75 E-value=3.4 Score=44.56 Aligned_cols=41 Identities=20% Similarity=0.298 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005378 364 GNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEE 405 (699)
Q Consensus 364 ~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E 405 (699)
..+.++-+.|..+..++...|.. +++|+.++...-..++.+
T Consensus 11 ~d~Q~ldE~Nq~lL~ki~~~E~~-iq~Le~Eit~~~~~~~~~ 51 (280)
T PF14992_consen 11 KDEQRLDEANQSLLQKIQEKEGA-IQSLEREITKMDHIADRS 51 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccccCch
Confidence 34455566677777777777777 777777776666555443
No 111
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=95.69 E-value=3.2 Score=46.78 Aligned_cols=95 Identities=14% Similarity=0.124 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhh-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 358 QAALSEGNLASLQMNMESIMRNREL-----------------------TETRMIQALREELASVERRAEEERAAHNATKM 414 (699)
Q Consensus 358 eL~r~k~rLeelq~E~~~L~e~~s~-----------------------~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ 414 (699)
-+.++=.++.+++.+++-|+.++.. .++.+++-|+.++..+...+..-+..|..--+
T Consensus 202 lvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~ 281 (552)
T KOG2129|consen 202 LVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLM 281 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667788888888888877643 24555566666666666666665666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 005378 415 AAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLE 459 (699)
Q Consensus 415 ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe 459 (699)
++.+-+..++++| ..+|++|..+..+-.-|.++++..+
T Consensus 282 qy~~Ee~~~reen-------~rlQrkL~~e~erRealcr~lsEse 319 (552)
T KOG2129|consen 282 QYRAEEVDHREEN-------ERLQRKLINELERREALCRMLSESE 319 (552)
T ss_pred HHHHHHhhHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 6666666666555 5788888888777666666655433
No 112
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=95.66 E-value=3.2 Score=42.87 Aligned_cols=154 Identities=18% Similarity=0.239 Sum_probs=72.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 005378 270 KEARLARVCAGLSSRLQEYKSENAQLEEL---LVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIE 346 (699)
Q Consensus 270 ke~qLa~~~aRLrK~~~ELkke~aqLEe~---l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~ 346 (699)
|.+.|+-+...|++.++|+......+=.+ +++.+......+..+..|+..+..-..++..-+ ..|..+.++++
T Consensus 8 k~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce----~ELqr~~~Ea~ 83 (202)
T PF06818_consen 8 KSGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCE----NELQRKKNEAE 83 (202)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhH----HHHHHHhCHHH
Confidence 45667777778887777776554433322 222222222333333333333333222222222 22333444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHhhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 347 TLVSSIDALKKQAALSEGNLASL---QMNMESIMRNRELT-----ETRMIQALREELASVERRAEEERAAHNATKMAAME 418 (699)
Q Consensus 347 eLe~RL~~LeqeL~r~k~rLeel---q~E~~~L~e~~s~~-----Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~ 418 (699)
-|...+..++.++..++..+..+ ..+...+....... ....+.++..++..+...|..|+..+......|-.
T Consensus 84 lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ 163 (202)
T PF06818_consen 84 LLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQ 163 (202)
T ss_pred HhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 55555555555555555555554 11111111100000 11225667777777777777777666665554444
Q ss_pred HHHHHHHHH
Q 005378 419 REVELEHRA 427 (699)
Q Consensus 419 Re~~LEeen 427 (699)
-=..+.+++
T Consensus 164 ER~~W~eEK 172 (202)
T PF06818_consen 164 ERRTWQEEK 172 (202)
T ss_pred HHHHHHHHH
Confidence 333444444
No 113
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.66 E-value=6.2 Score=46.18 Aligned_cols=46 Identities=15% Similarity=0.183 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 005378 422 ELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQ 467 (699)
Q Consensus 422 ~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQ 467 (699)
+.+.++..|...+.++...+.|.+.....++.++.+++..|...++
T Consensus 436 ~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~ 481 (581)
T KOG0995|consen 436 EAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKE 481 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444445555555555555555555555544444433
No 114
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=95.64 E-value=3.5 Score=49.52 Aligned_cols=191 Identities=17% Similarity=0.180 Sum_probs=90.6
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhH--H
Q 005378 278 CAGLSSRLQEYKSENAQLEELLVAERELSR--------SYEARIKQLEQELSVYKSEVTKVESNLA---EALAAKNS--E 344 (699)
Q Consensus 278 ~aRLrK~~~ELkke~aqLEe~l~elqek~~--------~Lq~kl~qLQ~EL~~eQ~er~q~es~~~---eaLaak~s--E 344 (699)
..=|.+++.+++.+..+.|..+...+.+.. ....++..|..+|...+.++...+..+. ..+..... .
T Consensus 196 ~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~ 275 (754)
T TIGR01005 196 ADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKKALQNGGSLDV 275 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 455566666666666666666555544322 1123455555555555544444333211 11110000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Q 005378 345 IETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATK----MAAMERE 420 (699)
Q Consensus 345 i~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk----~ea~~Re 420 (699)
+......-...+..+..++.++..++.+...+.....+.+-. +..++.+|..+++.+..|......+- ..+..|+
T Consensus 276 ~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~-v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~ 354 (754)
T TIGR01005 276 LPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLANHPR-VVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARE 354 (754)
T ss_pred hhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000112345555555666666555555555555555 55666677777777666655543321 1111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 005378 421 VELEHRAAEASMALARIQRIA---DERTAKAGELEQKVAMLEVECATLQQELQDMEARL 476 (699)
Q Consensus 421 ~~LEeenaelseALa~lQrkL---~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~ 476 (699)
..| ...+..++.++ .....+...|+++....+.-|..+-+++++.....
T Consensus 355 ~~L-------~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~ 406 (754)
T TIGR01005 355 SQL-------VSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQAASRQ 406 (754)
T ss_pred HHH-------HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 222 22222222222 22235566777777777777777777776665444
No 115
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=95.63 E-value=3.4 Score=43.96 Aligned_cols=100 Identities=15% Similarity=0.238 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHhhhhhHHHH
Q 005378 312 RIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMN----MESIMRNRELTETRM 387 (699)
Q Consensus 312 kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E----~~~L~e~~s~~Eke~ 387 (699)
...+.+.+|..-|..-...+.++..+|-.......+|+.+.++|.-++.+.|.+.+.-..+ ...|..+++.... |
T Consensus 28 ~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~a-i 106 (333)
T KOG1853|consen 28 HFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHA-I 106 (333)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 3444444444444433333333333333333444455556666655555555554433222 2223333333322 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 388 IQALREELASVERRAEEERAAHNAT 412 (699)
Q Consensus 388 lqSLE~eLkslQ~aLe~E~~aHk~T 412 (699)
+..+++-++.|+++-.--..+-++|
T Consensus 107 keql~kyiReLEQaNDdLErakRat 131 (333)
T KOG1853|consen 107 KEQLRKYIRELEQANDDLERAKRAT 131 (333)
T ss_pred HHHHHHHHHHHHHhccHHHHhhhhh
Confidence 5555555555555544433333333
No 116
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.63 E-value=7.7 Score=47.08 Aligned_cols=18 Identities=17% Similarity=0.047 Sum_probs=13.1
Q ss_pred CchhhhhHHHHHHHHHhh
Q 005378 246 PTKEQDQLDEAQGLLKTT 263 (699)
Q Consensus 246 ~~~lqkQLeE~n~~LrsE 263 (699)
..+|-++++-.++++.+-
T Consensus 620 f~kL~kele~~i~k~ls~ 637 (970)
T KOG0946|consen 620 FKKLFKELEGLIAKLLSS 637 (970)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 356777888888877765
No 117
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=95.61 E-value=9.8 Score=48.18 Aligned_cols=28 Identities=7% Similarity=0.119 Sum_probs=11.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 005378 449 GELEQKVAMLEVECATLQQELQDMEARL 476 (699)
Q Consensus 449 ~eLeqQ~smLe~dl~qLkQeLqd~e~~~ 476 (699)
..+.++....+..+.+++|-+...+.+.
T Consensus 282 n~l~~~~~~~~~~l~~~~q~~~~i~eQi 309 (1109)
T PRK10929 282 DLIASQQRQAASQTLQVRQALNTLREQS 309 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443333
No 118
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.61 E-value=5.1 Score=44.92 Aligned_cols=13 Identities=23% Similarity=0.215 Sum_probs=5.8
Q ss_pred HHHHHHHhHHhhh
Q 005378 627 VQLQKAAKLLDSG 639 (699)
Q Consensus 627 rrvk~A~~~lDs~ 639 (699)
+++..+...+-++
T Consensus 352 ~r~~~~t~q~~~G 364 (499)
T COG4372 352 RRRRPATRQSPSG 364 (499)
T ss_pred hhhhhhhccCCCC
Confidence 3444444444433
No 119
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.58 E-value=1.3 Score=48.14 Aligned_cols=119 Identities=29% Similarity=0.346 Sum_probs=75.6
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 005378 277 VCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALK 356 (699)
Q Consensus 277 ~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~Le 356 (699)
+...|....+.|+...+.|...+..+.+..-.+......|..++..++........- -..++..++.+|..+.
T Consensus 150 l~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~-------D~~eL~~lr~eL~~~~ 222 (325)
T PF08317_consen 150 LKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESC-------DQEELEALRQELAEQK 222 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-------CHHHHHHHHHHHHHHH
Confidence 555566666666666666666655556666666666666666666666554443332 2345556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 005378 357 KQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAE 403 (699)
Q Consensus 357 qeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe 403 (699)
.++...+..+.+++.++..+...+..+..+ ++.+..+|+.++.-.+
T Consensus 223 ~~i~~~k~~l~el~~el~~l~~~i~~~~~~-k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 223 EEIEAKKKELAELQEELEELEEKIEELEEQ-KQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 667777777777777777777777666666 6666667776665554
No 120
>PRK11281 hypothetical protein; Provisional
Probab=95.47 E-value=11 Score=47.82 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=20.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 338 LAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNME 374 (699)
Q Consensus 338 Laak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~ 374 (699)
|+..++++..++.+.++++..+.....++.+......
T Consensus 144 La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~ 180 (1113)
T PRK11281 144 LAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLK 180 (1113)
T ss_pred HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555556666666666666666666555555443
No 121
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.47 E-value=1.5 Score=47.78 Aligned_cols=46 Identities=17% Similarity=0.254 Sum_probs=20.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 005378 338 LAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT 383 (699)
Q Consensus 338 Laak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~ 383 (699)
|.....+++..+..+..++.++...+..++++.+.+..+...+.+.
T Consensus 218 L~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 218 LAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444444444443
No 122
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.41 E-value=3.7 Score=42.00 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=7.1
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 005378 456 AMLEVECATLQQELQDME 473 (699)
Q Consensus 456 smLe~dl~qLkQeLqd~e 473 (699)
..+...+..+..++..+.
T Consensus 167 ~~~~~~~~~l~~ei~~L~ 184 (194)
T PF15619_consen 167 KEAQEEVKSLQEEIQRLN 184 (194)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444443333
No 123
>PF13514 AAA_27: AAA domain
Probab=95.28 E-value=12 Score=47.21 Aligned_cols=33 Identities=27% Similarity=0.402 Sum_probs=16.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Q 005378 447 KAGELEQKVAMLEVECATLQQELQDMEARLKRG 479 (699)
Q Consensus 447 ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~ 479 (699)
++..+..++..++..+..+..++..++.++...
T Consensus 802 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~L 834 (1111)
T PF13514_consen 802 ERERLQEQLEELEEELEQAEEELEELEAELAEL 834 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555554443
No 124
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.15 E-value=1.2 Score=48.43 Aligned_cols=120 Identities=22% Similarity=0.287 Sum_probs=63.5
Q ss_pred hHHHHHHHHHhh-------hhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005378 252 QLDEAQGLLKTT-------ISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK 324 (699)
Q Consensus 252 QLeE~n~~LrsE-------~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ 324 (699)
.|++-|..||.| +.+...|+.+|-.-|+ +++.+...+++.|.+.+..-.+-+...+.++.+|.+++-.+|
T Consensus 171 ~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv---~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ 247 (306)
T PF04849_consen 171 SLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCV---KQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQ 247 (306)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHH---HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777777 3455566777766665 355666666666666555445555555566666666666655
Q ss_pred HHHHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 325 SEVTKV---ESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNME 374 (699)
Q Consensus 325 ~er~q~---es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~ 374 (699)
....+. .+++...|.+...-...|...+..++......-.-|.+.+++.+
T Consensus 248 ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk 300 (306)
T PF04849_consen 248 QRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELK 300 (306)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544442 22233333333333333444444444444444444444444433
No 125
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.06 E-value=2.9 Score=39.82 Aligned_cols=124 Identities=16% Similarity=0.222 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHH
Q 005378 437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQGQRDAENKLSSLE 516 (699)
Q Consensus 437 lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~qqk~~~~~~qei~~leeEl~r~r~~~~~le~~l~~lE 516 (699)
++..+..-.....+...++..+..++.........++...++...+-..... .+..++.++..++.....+...+....
T Consensus 8 l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~-~L~~lr~e~~~~~~~~~~l~~~~~~a~ 86 (132)
T PF07926_consen 8 LQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIK-ELQQLREELQELQQEINELKAEAESAK 86 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444445555555555555655555555555555555433333322 234444444433322222222222222
Q ss_pred HHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 517 AEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKE 579 (699)
Q Consensus 517 ~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~ 579 (699)
..+...+ .-.+.+=..|..++.+-+..+++|...+.-|--|||.+
T Consensus 87 ~~l~~~e------------------~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 87 AELEESE------------------ASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHH------------------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 2222222 23344555566666666677777777777777777753
No 126
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=95.04 E-value=6.6 Score=42.85 Aligned_cols=67 Identities=19% Similarity=0.320 Sum_probs=39.4
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHH
Q 005378 454 KVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAA 528 (699)
Q Consensus 454 Q~smLe~dl~qLkQeLqd~e~~~~r~qqk~~~~~~qei~~leeEl~r~r~~~~~le~~l~~lE~elqkLr~e~~~ 528 (699)
++..+......|+..|.-|..+...-+. +..-.+..-..|+.|+.+.. .++..+|.+...++..|..
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~-tL~kSNe~F~tfk~Emekm~-------Kk~kklEKE~~~~k~k~e~ 269 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQD-TLNKSNEVFETFKKEMEKMS-------KKIKKLEKENQTWKSKWEK 269 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 7777888888888888888766665442 12222333355666665432 3344566666666665543
No 127
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=94.95 E-value=5.4 Score=41.35 Aligned_cols=76 Identities=22% Similarity=0.145 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 005378 394 ELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDM 472 (699)
Q Consensus 394 eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~ 472 (699)
-+.....++..+...|.+++..+. ..|+.+|.+++......+..+.-=...+--.+-++..|+..+++-.++.+++
T Consensus 119 ~~~ey~~~l~~~eqry~aLK~hAe---ekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~EL 194 (207)
T PF05010_consen 119 CIEEYEERLKKEEQRYQALKAHAE---EKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEEL 194 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555566666666544 3445666555544433333332222333333444444555555544444433
No 128
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.91 E-value=12 Score=45.39 Aligned_cols=35 Identities=11% Similarity=-0.122 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 547 RYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMN 581 (699)
Q Consensus 547 rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~ 581 (699)
.+-.++++-.+++--++....-..+|.--|+.+..
T Consensus 905 ki~s~kqeqee~~v~~~~~~~~i~alk~~l~dL~q 939 (970)
T KOG0946|consen 905 KIVSNKQEQEELLVLLADQKEKIQALKEALEDLNQ 939 (970)
T ss_pred cccchhhhHHHHHHHHhhHHHHHHHHHHHHHHhCC
Confidence 34444444444444444444444444444444443
No 129
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.88 E-value=0.21 Score=50.37 Aligned_cols=107 Identities=24% Similarity=0.326 Sum_probs=30.5
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHH
Q 005378 274 LARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES---NLAEALAAKNSEIETLVS 350 (699)
Q Consensus 274 La~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es---~~~eaLaak~sEi~eLe~ 350 (699)
+.-....+++-++++.+.+.++...+..+......++..+...+..+..++.++...+. .+...+..++..++.|..
T Consensus 72 le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~D 151 (194)
T PF08614_consen 72 LEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQD 151 (194)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666666666555544444433333333333333332222222221 122334445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 005378 351 SIDALKKQAALSEGNLASLQMNMESIMRNR 380 (699)
Q Consensus 351 RL~~LeqeL~r~k~rLeelq~E~~~L~e~~ 380 (699)
.+.+|+-++..++.++.+++.|+..|-++.
T Consensus 152 E~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 152 ELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555556666666666666655555544
No 130
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.88 E-value=9.2 Score=43.70 Aligned_cols=67 Identities=19% Similarity=0.223 Sum_probs=48.2
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 510 NKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQ-TQLETMASEKAAAEFQLEKEMNRL 583 (699)
Q Consensus 510 ~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ-~qlE~L~~Er~sL~~qLE~~~~~a 583 (699)
.++.+.++...+|++++.. .+..+.-..|..||++++-.. .|| +.|-.+.+|...|+.|+.....++
T Consensus 359 eei~~~eel~~~Lrsele~------lp~dv~rk~ytqrikEi~gni-RKq~~DI~Kil~etreLqkq~ns~se~L 426 (521)
T KOG1937|consen 359 EEIESNEELAEKLRSELEK------LPDDVQRKVYTQRIKEIDGNI-RKQEQDIVKILEETRELQKQENSESEAL 426 (521)
T ss_pred HHHHhhHHHHHHHHHHHhc------CCchhHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666665543 234455789999999998764 565 789999999999999988876654
No 131
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.76 E-value=7.9 Score=42.35 Aligned_cols=10 Identities=30% Similarity=0.431 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 005378 460 VECATLQQEL 469 (699)
Q Consensus 460 ~dl~qLkQeL 469 (699)
..+..++.++
T Consensus 253 ~~l~~~~~~l 262 (423)
T TIGR01843 253 ARLAELRERL 262 (423)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 132
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.76 E-value=12 Score=44.44 Aligned_cols=35 Identities=20% Similarity=0.128 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 546 KRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM 580 (699)
Q Consensus 546 ~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~ 580 (699)
..||+.=+.|+..-...-.+..|..-|.-|++...
T Consensus 557 a~lh~~c~~Li~~v~~tG~~~rEirdLe~qI~~e~ 591 (594)
T PF05667_consen 557 ASLHENCSQLIETVEETGTISREIRDLEEQIDTES 591 (594)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 35666666777776666677777777777776543
No 133
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=94.67 E-value=8.1 Score=43.19 Aligned_cols=122 Identities=12% Similarity=0.155 Sum_probs=61.9
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 005378 277 VCAGLSSRLQEYKSENAQLEELLVAERELSRS---------YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIET 347 (699)
Q Consensus 277 ~~aRLrK~~~ELkke~aqLEe~l~elqek~~~---------Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~e 347 (699)
...-|.+++.+++.+....|..+...+.+... ...++..|..++...+..+......+.. . .....
T Consensus 172 ~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~----~-~~~~~ 246 (444)
T TIGR03017 172 AALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGG----S-SGKDA 246 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc----c-CCccc
Confidence 46667777777777777777777766554432 2234555555555555444433221110 0 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 348 LVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEER 406 (699)
Q Consensus 348 Le~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~ 406 (699)
+ ..+ .....+..++.++..++.++..+.....+.+-. +.+++.+|..++..+..+.
T Consensus 247 ~-~~~-~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~-v~~l~~~i~~l~~~l~~e~ 302 (444)
T TIGR03017 247 L-PEV-IANPIIQNLKTDIARAESKLAELSQRLGPNHPQ-YKRAQAEINSLKSQLNAEI 302 (444)
T ss_pred c-hhh-hcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcH-HHHHHHHHHHHHHHHHHHH
Confidence 0 000 011224445555566666666665555555555 4556666666666665443
No 134
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.61 E-value=13 Score=44.21 Aligned_cols=80 Identities=19% Similarity=0.197 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 291 ENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQ 370 (699)
Q Consensus 291 e~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq 370 (699)
+...+|..+.++......+..++..++.++...+..+...+..++..=.....++..|+.++..++.++...+..+.++.
T Consensus 210 ~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~ 289 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELA 289 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444444444455555555444444444444433223334444555555555555555554444433
No 135
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=94.57 E-value=11 Score=43.13 Aligned_cols=108 Identities=12% Similarity=0.113 Sum_probs=83.9
Q ss_pred HHHhhhhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 259 LLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEAL 338 (699)
Q Consensus 259 ~LrsE~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaL 338 (699)
..+.+++.-..|++|| .+||++..+-+++....+|.. .....|+.++..++..+.+.+....++...+..++
T Consensus 169 q~~d~~e~~~~kdSQl---kvrlqe~~~ll~~Rve~le~~-----Sal~~lq~~L~la~~~~~~~~e~~i~~~~~f~~r~ 240 (554)
T KOG4677|consen 169 QYRDYSEDWSPKDSQL---KVRLQEVRRLLKGRVESLERF-----SALRSLQDKLQLAEEAVSMHDENVITAVLIFLKRT 240 (554)
T ss_pred hHhhHhhhcccchhhH---HHHHHHHHHHHHhhhHHHHHH-----HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 4567777788899998 889999999999998888885 45678888899999999999999999888888888
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 339 AAKNSEIETLVSSIDALKKQAALSEGNLASLQMNME 374 (699)
Q Consensus 339 aak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~ 374 (699)
-.+.-++..+-.-++-+..-+-.-+.+..+.+.-.+
T Consensus 241 ~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~~~~ 276 (554)
T KOG4677|consen 241 LSKEIEFRNELEVRQLALRHLIHFKKEIDEQKLLLD 276 (554)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888876665666666666666665555544433
No 136
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=94.57 E-value=6.7 Score=40.67 Aligned_cols=151 Identities=21% Similarity=0.247 Sum_probs=75.5
Q ss_pred hhhHHHHHHHHHhhhhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHH---hHHHHHHHHHHHHHHHHHHH
Q 005378 250 QDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAE-REL---SRSYEARIKQLEQELSVYKS 325 (699)
Q Consensus 250 qkQLeE~n~~LrsE~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~el-qek---~~~Lq~kl~qLQ~EL~~eQ~ 325 (699)
++.+|.+...++.++.....+...|-.-+..+.....++.+-....|..+..+ .+. .......+..+..+......
T Consensus 4 ~~d~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~ 83 (207)
T PF05010_consen 4 QKDLDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYA 83 (207)
T ss_pred HHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHH
Confidence 45677788888877543333444444444444455555555555555544332 111 11222234444444444444
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHH----HHHHHHHHH
Q 005378 326 EVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR----EELASVERR 401 (699)
Q Consensus 326 er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE----~eLkslQ~a 401 (699)
.+.+++..|. +|-.|...+..-+.-.+...+.+.........++...+.+ .++|. ..|..+-.-
T Consensus 84 dL~s~E~sfs-----------dl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqr-y~aLK~hAeekL~~ANee 151 (207)
T PF05010_consen 84 DLNSLEKSFS-----------DLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQR-YQALKAHAEEKLEKANEE 151 (207)
T ss_pred HHHHHHhhHH-----------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 4444443333 6666666666666666666665555555555555444443 33333 445555555
Q ss_pred HHHHHHHHHHH
Q 005378 402 AEEERAAHNAT 412 (699)
Q Consensus 402 Le~E~~aHk~T 412 (699)
+++-+..|.+-
T Consensus 152 i~~v~~~~~~e 162 (207)
T PF05010_consen 152 IAQVRSKHQAE 162 (207)
T ss_pred HHHHHHHhHHH
Confidence 55555554443
No 137
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.56 E-value=6.4 Score=40.38 Aligned_cols=103 Identities=17% Similarity=0.277 Sum_probs=63.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 005378 280 GLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQA 359 (699)
Q Consensus 280 RLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL 359 (699)
.|++.++++++.-...+..+.+.......|..-+..++.+...++..+..-+. ....|....+.+..++..|..+.-+-
T Consensus 31 sLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~k-dK~~L~~~k~rl~~~ek~l~~Lk~e~ 109 (201)
T PF13851_consen 31 SLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEK-DKQSLQNLKARLKELEKELKDLKWEH 109 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544444444444444455555555555544444433 23355556667777788888888888
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhh
Q 005378 360 ALSEGNLASLQMNMESIMRNRELT 383 (699)
Q Consensus 360 ~r~k~rLeelq~E~~~L~e~~s~~ 383 (699)
+.+..+..+++.+++.|.......
T Consensus 110 evL~qr~~kle~ErdeL~~kf~~~ 133 (201)
T PF13851_consen 110 EVLEQRFEKLEQERDELYRKFESA 133 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888777664
No 138
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=94.51 E-value=8.8 Score=41.78 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHH
Q 005378 366 LASLQMNMESIMRNRELTETRMIQALREELASVERRA 402 (699)
Q Consensus 366 Leelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aL 402 (699)
++.+...+.-|.+.++..+.. ..+|+.+|+-+.-+|
T Consensus 139 ~S~lkd~ne~LsQqLskaesK-~nsLe~elh~trdaL 174 (305)
T PF14915_consen 139 VSNLKDNNEILSQQLSKAESK-FNSLEIELHHTRDAL 174 (305)
T ss_pred HHhHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 444445555555555555555 555555555555444
No 139
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=94.46 E-value=15 Score=44.25 Aligned_cols=31 Identities=16% Similarity=0.246 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 557 YKQTQLETMASEKAAAEFQLEKEMNRLQEVQ 587 (699)
Q Consensus 557 eKQ~qlE~L~~Er~sL~~qLE~~~~~a~~~~ 587 (699)
.++.++..|..|....+..++.+..++.+..
T Consensus 373 ~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~ 403 (754)
T TIGR01005 373 EQQVDLDALQRDAAAKRQLYESYLTNYRQAA 403 (754)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777776654
No 140
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.46 E-value=8.4 Score=41.35 Aligned_cols=86 Identities=19% Similarity=0.203 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 345 IETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR--MIQALREELASVERRAEEERAAHNATKMAAMEREVE 422 (699)
Q Consensus 345 i~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke--~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~ 422 (699)
+.++-.|+.++..=+.--+.-++....+...|...-...+.. -+.++..++......|+-++.+-+..-+.+..++.+
T Consensus 129 fsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~ 208 (265)
T COG3883 129 FSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEAS 208 (265)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888777777777777777777777666555433 133333445555555555555555555555556666
Q ss_pred HHHHHHHH
Q 005378 423 LEHRAAEA 430 (699)
Q Consensus 423 LEeenael 430 (699)
.+.+.+.+
T Consensus 209 ~~~e~a~l 216 (265)
T COG3883 209 ALGEKAAL 216 (265)
T ss_pred hHHHHHHH
Confidence 55555333
No 141
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=94.43 E-value=14 Score=43.76 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=40.5
Q ss_pred HhHHhhhhHhHhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 005378 633 AKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQ 678 (699)
Q Consensus 633 ~~~lDs~slr~g~fLRRyP~aRl~~l~Y~vlLHlWVm~vL~~~~~~ 678 (699)
...+|.+.+-+|+|+-.+-++|.+||||+|+||..||+||+ .-+.
T Consensus 575 l~~~~~~~~s~~r~~l~nk~~r~~~~~y~i~lh~~v~~~l~-~~~~ 619 (629)
T KOG0963|consen 575 LGSFERITLSLGRTLLFNKMTRTLFFFYTIGLHLLVFIVLY-LGAA 619 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh
Confidence 35679999999999999999999999999999999999999 5543
No 142
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.30 E-value=3.8 Score=44.81 Aligned_cols=119 Identities=19% Similarity=0.262 Sum_probs=68.3
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 005378 277 VCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALK 356 (699)
Q Consensus 277 ~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~Le 356 (699)
+...|.+....|+.....|...+..+.+..-.+..+...|..++..++..-...++- -.+++..++.+|....
T Consensus 145 Lk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~-------d~~eL~~lk~~l~~~~ 217 (312)
T smart00787 145 LKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDC-------DPTELDRAKEKLKKLL 217 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhC-------CHHHHHHHHHHHHHHH
Confidence 444555555555555555555444444455555555555555555555444443320 1234445556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 005378 357 KQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAE 403 (699)
Q Consensus 357 qeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe 403 (699)
.++...+..++.++.++..+...+.....+ ++.++.+|+.++.-++
T Consensus 218 ~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~-k~e~~~~I~~ae~~~~ 263 (312)
T smart00787 218 QEIMIKVKKLEELEEELQELESKIEDLTNK-KSELNTEIAEAEKKLE 263 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 666666666777777777777777666666 6666666666666553
No 143
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.22 E-value=16 Score=43.54 Aligned_cols=31 Identities=19% Similarity=0.248 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 346 ETLVSSIDALKKQAALSEGNLASLQMNMESI 376 (699)
Q Consensus 346 ~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L 376 (699)
..+..++..+.+++...+..++.++...+.+
T Consensus 219 ~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l 249 (650)
T TIGR03185 219 KEQSEKYEDLAQEIAHLRNELEEAQRSLESL 249 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 144
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=18 Score=43.67 Aligned_cols=157 Identities=13% Similarity=0.167 Sum_probs=90.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-HH
Q 005378 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAA--HNATKMA-AM 417 (699)
Q Consensus 341 k~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~a--Hk~Tk~e-a~ 417 (699)
.=+..++++.++..|-+++......-=++-.+...+.+.+..+.+. +.-++..+.++.......... +-..+.. ..
T Consensus 459 ~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~e-k~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt 537 (698)
T KOG0978|consen 459 IGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREE-KSKLEEQILTLKASVDKLELKIGKLEEQERGLT 537 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344555666666666666666666666666666666666555444 555555544444333321111 1111111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 005378 418 EREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDE 497 (699)
Q Consensus 418 ~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~qqk~~~~~~qei~~leeE 497 (699)
.+...+..+-.-+..++....++..+-...+..|+.++......+.+++..+.+....+.....+ ...+++|
T Consensus 538 ~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k--------~~rleEE 609 (698)
T KOG0978|consen 538 SNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFK--------RKRLEEE 609 (698)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
Confidence 12344455555566677777777777777777787777777777777777777666555544322 3567777
Q ss_pred HHHHHHhHH
Q 005378 498 VERARQGQR 506 (699)
Q Consensus 498 l~r~r~~~~ 506 (699)
+.+++...+
T Consensus 610 ~e~L~~kle 618 (698)
T KOG0978|consen 610 LERLKRKLE 618 (698)
T ss_pred HHHHHHHHH
Confidence 777765444
No 145
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.05 E-value=0.015 Score=69.29 Aligned_cols=19 Identities=47% Similarity=0.548 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005378 550 ELTDLLYYKQTQLETMASE 568 (699)
Q Consensus 550 eLte~L~eKQ~qlE~L~~E 568 (699)
++.+++..+...++.+..+
T Consensus 551 e~~~e~~~~~~~le~l~~~ 569 (713)
T PF05622_consen 551 ELKDELQKKREQLEELEQE 569 (713)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555443
No 146
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=93.95 E-value=13 Score=45.46 Aligned_cols=125 Identities=26% Similarity=0.280 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 005378 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELAS---VERRAEEERAAHNATKMAAM 417 (699)
Q Consensus 341 k~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLks---lQ~aLe~E~~aHk~Tk~ea~ 417 (699)
.......+...+..++..-..+...+.+++.+.+.++-.+.+.+.. +.+++.+|.+ ....++-+...++.....+.
T Consensus 587 ~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~-L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le 665 (769)
T PF05911_consen 587 DTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQK-LEELQSELESAKESNSLAETQLKAMKESYESLE 665 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444445555555555555555555556666666666666555555 5555544433 34455556666766777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 005378 418 EREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQ 466 (699)
Q Consensus 418 ~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLk 466 (699)
.|...+|.+...+..-+..++..|..++....++..+|..|+..+....
T Consensus 666 ~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~ 714 (769)
T PF05911_consen 666 TRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMK 714 (769)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhh
Confidence 7877888888888888899999999999888888887777776665543
No 147
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.93 E-value=16 Score=44.26 Aligned_cols=80 Identities=10% Similarity=0.248 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 492 QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAA 571 (699)
Q Consensus 492 ~~leeEl~r~r~~~~~le~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~s 571 (699)
+.|..|+.+.+...+.+...|..+...+.+.+.++. .+. + +...+...-++|.+.+++-|-+--..|.++..+...
T Consensus 635 r~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~-~~~--~-~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~ 710 (717)
T PF10168_consen 635 REFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIE-SQK--S-PKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKN 710 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccc--c-ccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777776666555444444444444444433332 111 1 111123566788888888888877888888777766
Q ss_pred HHHH
Q 005378 572 AEFQ 575 (699)
Q Consensus 572 L~~q 575 (699)
+...
T Consensus 711 i~~~ 714 (717)
T PF10168_consen 711 IKKI 714 (717)
T ss_pred HHHh
Confidence 5543
No 148
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.83 E-value=0.87 Score=46.93 Aligned_cols=39 Identities=18% Similarity=0.288 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 005378 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRN 379 (699)
Q Consensus 341 k~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~ 379 (699)
.+.++.+|+.+.+.|.+++..++..+..++.++..++.+
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555555444443
No 149
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.78 E-value=4.4 Score=44.30 Aligned_cols=19 Identities=11% Similarity=0.200 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005378 427 AAEASMALARIQRIADERT 445 (699)
Q Consensus 427 naelseALa~lQrkL~EEk 445 (699)
.+++-..+..+++.+.+-+
T Consensus 248 k~e~~~~I~~ae~~~~~~r 266 (312)
T smart00787 248 KSELNTEIAEAEKKLEQCR 266 (312)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 3333444444444444433
No 150
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.71 E-value=13 Score=40.90 Aligned_cols=190 Identities=20% Similarity=0.207 Sum_probs=96.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 005378 278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQE----------LSVYKSEVTKVESNLAEALAAKNSEIET 347 (699)
Q Consensus 278 ~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~E----------L~~eQ~er~q~es~~~eaLaak~sEi~e 347 (699)
.--|...++..+.++.+.=-+...+++++..|..+...+... ....+..+.+.=.+.+++.-....++..
T Consensus 11 L~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~ 90 (319)
T PF09789_consen 11 LLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEE 90 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555445555555555544444411 0113344444444566666667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh------------hhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 005378 348 LVSSIDALKKQAALSEGNLASLQMNMESIMRNR------------ELTETRMIQALREELASVER---RAEEERAAHNAT 412 (699)
Q Consensus 348 Le~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~------------s~~Eke~lqSLE~eLkslQ~---aLe~E~~aHk~T 412 (699)
|..+|.+++.+++.++..+...+.....+-..+ +....+ +..++.+++++-- -+..|+..|+.
T Consensus 91 Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q-~~qLe~d~qs~lDEkeEl~~ERD~yk~- 168 (319)
T PF09789_consen 91 LRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQ-IEQLERDLQSLLDEKEELVTERDAYKC- 168 (319)
T ss_pred HHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 777777777777777777777665544433322 111122 2222222222211 11112222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q 005378 413 KMAAMEREVELEHRAAEASMALARIQRIA---DERTAKAGELEQKVAMLEVECATLQQELQDMEARLKR 478 (699)
Q Consensus 413 k~ea~~Re~~LEeenaelseALa~lQrkL---~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r 478 (699)
.- ..=|.+|.-.|..-.+++ +.=..+---|..++..++.+...+++-+..|+..+++
T Consensus 169 ------K~---~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~ 228 (319)
T PF09789_consen 169 ------KA---HRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALER 228 (319)
T ss_pred ------HH---HHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 112455555554433331 1111233356667777788888888888888888774
No 151
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=93.62 E-value=18 Score=42.16 Aligned_cols=61 Identities=18% Similarity=0.263 Sum_probs=47.4
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 509 ENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAE 573 (699)
Q Consensus 509 e~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~ 573 (699)
+.+...++.++..+...+..+++.|+ .....||.||..|+|+|+.=+.+|..-..|+.+|.
T Consensus 454 E~ek~~l~eeL~~a~~~i~~LqDEL~----TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 454 EKEKESLEEELKEANQNISRLQDELE----TTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444566666666666777776653 34788999999999999999999999999998886
No 152
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.54 E-value=10 Score=38.96 Aligned_cols=78 Identities=17% Similarity=0.273 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 493 AWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKA 570 (699)
Q Consensus 493 ~leeEl~r~r~~~~~le~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~ 570 (699)
.++.++..++-..+.++.+...++.+-..|.......-.++-+-..-....|++++..|++.|..|..++..+..--+
T Consensus 97 ~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~n 174 (201)
T PF13851_consen 97 ELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAAN 174 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334444444433333334444444444444433211111111112345788999999999999999999998877544
No 153
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=93.38 E-value=14 Score=40.28 Aligned_cols=44 Identities=14% Similarity=0.246 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhc
Q 005378 437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (699)
Q Consensus 437 lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~q 480 (699)
+...|..=..+..+++.-+.-...-+.+.+++++.|-....+..
T Consensus 214 Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklE 257 (309)
T PF09728_consen 214 LREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLE 257 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333355556666656566666777777777665555443
No 154
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=93.38 E-value=20 Score=42.04 Aligned_cols=53 Identities=11% Similarity=0.109 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 518 EVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAA 571 (699)
Q Consensus 518 elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~s 571 (699)
....+..++..+..+|++ .+.+-...+..+.+..+.+..=..+...|......
T Consensus 449 ~~~~~~~~i~~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~ 501 (569)
T PRK04778 449 MFFEVSDEIEALAEELEE-KPINMEAVNRLLEEATEDVETLEEETEELVENATL 501 (569)
T ss_pred HHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555554 22333333334444444444434444444443333
No 155
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=93.37 E-value=29 Score=43.79 Aligned_cols=29 Identities=10% Similarity=0.165 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 542 MELEKRYRELTDLLYYKQTQLETMASEKA 570 (699)
Q Consensus 542 ~ele~rl~eLte~L~eKQ~qlE~L~~Er~ 570 (699)
..++..+..+...+...+..+..+.....
T Consensus 825 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 853 (1047)
T PRK10246 825 EQIQQELAQLAQQLRENTTRQGEIRQQLK 853 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666555555544444333
No 156
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.26 E-value=0.45 Score=48.01 Aligned_cols=96 Identities=21% Similarity=0.334 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 491 IQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKA 570 (699)
Q Consensus 491 i~~leeEl~r~r~~~~~le~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~ 570 (699)
+..+.+|+..+...+..+..+|..+..+++.++.++......+..+ ......|+.++..|.+.|.+|+..++.|..|..
T Consensus 76 ~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l-~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~ 154 (194)
T PF08614_consen 76 LAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAEL-EAELAQLEEKIKDLEEELKEKNKANEILQDELQ 154 (194)
T ss_dssp --------------------------------------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccchhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666665555555555666677777777777766555444433 234678899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005378 571 AAEFQLEKEMNRLQEVQ 587 (699)
Q Consensus 571 sL~~qLE~~~~~a~~~~ 587 (699)
+|.+++-.++.+++..+
T Consensus 155 ~L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 155 ALQLQLNMLEEKLRKLE 171 (194)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999988887664
No 157
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=93.04 E-value=20 Score=40.90 Aligned_cols=33 Identities=9% Similarity=0.172 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 555 LYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ 587 (699)
Q Consensus 555 L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~~~~ 587 (699)
+-.++.++..|..+....+...+.+..++.+.+
T Consensus 350 ~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~ 382 (498)
T TIGR03007 350 IPEVEAELTQLNRDYEVNKSNYEQLLTRRESAE 382 (498)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777777777776654
No 158
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=93.04 E-value=30 Score=42.91 Aligned_cols=6 Identities=17% Similarity=-0.119 Sum_probs=2.3
Q ss_pred HHHHHH
Q 005378 664 VHLFLM 669 (699)
Q Consensus 664 LHlWVm 669 (699)
.+||-|
T Consensus 775 ~~l~~~ 780 (908)
T COG0419 775 EILSKL 780 (908)
T ss_pred HHHHHH
Confidence 334433
No 159
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=92.93 E-value=7.5 Score=38.64 Aligned_cols=36 Identities=14% Similarity=0.338 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005378 439 RIADERTAKAGELEQKVAMLEVECATLQQELQDMEA 474 (699)
Q Consensus 439 rkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~ 474 (699)
.++.+.+.++..++.++..+..++..+.+.+++.+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (191)
T PF04156_consen 151 KELQDSREEVQELRSQLERLQENLQQLEEKIQELQE 186 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666666666665555555555544443
No 160
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=92.80 E-value=6.8 Score=38.92 Aligned_cols=36 Identities=28% Similarity=0.393 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005378 285 LQEYKSENAQLEELLVAERELSRSYEARIKQLEQEL 320 (699)
Q Consensus 285 ~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL 320 (699)
+.+++....++++.+.+++.....+...+..++..+
T Consensus 83 ~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~ 118 (191)
T PF04156_consen 83 LSELQQQLQQLQEELDQLQERIQELESELEKLKEDL 118 (191)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433333
No 161
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=92.74 E-value=37 Score=43.28 Aligned_cols=13 Identities=8% Similarity=0.337 Sum_probs=6.2
Q ss_pred HHHHHHHHhhccc
Q 005378 666 LFLMYLLHRLQEQ 678 (699)
Q Consensus 666 lWVm~vL~~~~~~ 678 (699)
+|+|++++++.+.
T Consensus 568 ~w~~~~~~~~~~~ 580 (1109)
T PRK10929 568 LWVFMICATFARP 580 (1109)
T ss_pred HHHHHHHHHHcCC
Confidence 4555554444433
No 162
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.69 E-value=35 Score=42.88 Aligned_cols=54 Identities=13% Similarity=0.259 Sum_probs=37.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHH
Q 005378 333 NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (699)
Q Consensus 333 ~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke 386 (699)
.+...+++.++++..++.+++.-+.++...+....+...+...+...+...++.
T Consensus 231 k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~ 284 (1141)
T KOG0018|consen 231 KANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEK 284 (1141)
T ss_pred hhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777877777777777777766666666666666666555554
No 163
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.35 E-value=4.8 Score=38.31 Aligned_cols=93 Identities=17% Similarity=0.282 Sum_probs=40.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 005378 302 ERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRE 381 (699)
Q Consensus 302 lqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s 381 (699)
++..++.++.++..++.++.++...+..+..++. .|...+.+......+ +..++..+..++..-..+.+-+.
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv-~l~~~~e~~~~~~~~-------~~~L~~el~~l~~ry~t~LellG 92 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIV-KLMEENEELRALKKE-------VEELEQELEELQQRYQTLLELLG 92 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455555555555555555555555544333 111222222222222 22223333333333333444444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 005378 382 LTETRMIQALREELASVERRAE 403 (699)
Q Consensus 382 ~~Eke~lqSLE~eLkslQ~aLe 403 (699)
++..+ ...|+.++.+++.-|.
T Consensus 93 EK~E~-veEL~~Dv~DlK~myr 113 (120)
T PF12325_consen 93 EKSEE-VEELRADVQDLKEMYR 113 (120)
T ss_pred chHHH-HHHHHHHHHHHHHHHH
Confidence 44444 5556666666655553
No 164
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=92.33 E-value=4.5 Score=39.08 Aligned_cols=80 Identities=29% Similarity=0.343 Sum_probs=44.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 005378 273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI 352 (699)
Q Consensus 273 qLa~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL 352 (699)
+|.....+|+..++++..+.+.++...+.++..+..+...+.....++.+++....+....+.-.+-.++-++..|+.+|
T Consensus 70 ~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 70 RLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445556666666666666666665555555555555555555555555555555555545444444444555554443
No 165
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=92.05 E-value=34 Score=41.26 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 005378 422 ELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVEC 462 (699)
Q Consensus 422 ~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl 462 (699)
..+.+.+.|++....++..+.+.......+..|+...+..+
T Consensus 511 qgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~l 551 (739)
T PF07111_consen 511 QGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSL 551 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 45667777777777777777777776667766666555444
No 166
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.04 E-value=2.6 Score=43.47 Aligned_cols=44 Identities=14% Similarity=0.240 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHH
Q 005378 357 KQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERR 401 (699)
Q Consensus 357 qeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~a 401 (699)
+.+...+....++..++++|.+.+....++ +..++.++.+++..
T Consensus 125 ~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~-~~~l~~~~~~~~~~ 168 (206)
T PRK10884 125 QKVAQSDSVINGLKEENQKLKNQLIVAQKK-VDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 334444444555566666665555555444 44444445544443
No 167
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=91.99 E-value=18 Score=37.89 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 419 REVELEHRAAEASMALARIQRIADERTA 446 (699)
Q Consensus 419 Re~~LEeenaelseALa~lQrkL~EEk~ 446 (699)
|...++.-+..+..-|..|...++.++.
T Consensus 115 r~~~ie~~~~~l~~~l~~l~~~~~~Er~ 142 (247)
T PF06705_consen 115 RPQDIEELNQELVRELNELQEAFENERN 142 (247)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555553
No 168
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=91.64 E-value=10 Score=35.52 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=37.5
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVE 331 (699)
Q Consensus 278 ~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~e 331 (699)
-...+-.+.+|.+++.+|+..+..++.-..+...++..||+.+......+...+
T Consensus 25 lE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK 78 (107)
T PF09304_consen 25 LEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEK 78 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777777777777777777777777777777777666666543
No 169
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=91.39 E-value=19 Score=37.13 Aligned_cols=32 Identities=22% Similarity=0.149 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005378 289 KSENAQLEELLVAERELSRSYEARIKQLEQEL 320 (699)
Q Consensus 289 kke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL 320 (699)
......|++.+...++++..+..++..+.+.-
T Consensus 10 nrri~~leeele~aqErl~~a~~KL~Eaeq~~ 41 (205)
T KOG1003|consen 10 NRRIQLLEEELDRAQERLATALQKLEEAEQAA 41 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33344444444444444444444444444333
No 170
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.13 E-value=14 Score=35.24 Aligned_cols=92 Identities=17% Similarity=0.232 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 286 QEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGN 365 (699)
Q Consensus 286 ~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~r 365 (699)
..|+....++|..+..+++.+..|......+..++-.+-......+. ....+.....++.+|+.|.+.+=+-+..-.+.
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~-~~~~~~~L~~el~~l~~ry~t~LellGEK~E~ 97 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRA-LKKEVEELEQELEELQQRYQTLLELLGEKSEE 97 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 44555666666666666666666666666666666665555555543 44455566666666666666666666666666
Q ss_pred HHHHHHHHHHHhH
Q 005378 366 LASLQMNMESIMR 378 (699)
Q Consensus 366 Leelq~E~~~L~e 378 (699)
.++++.+..-++.
T Consensus 98 veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 98 VEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666555443
No 171
>PLN03188 kinesin-12 family protein; Provisional
Probab=91.12 E-value=56 Score=41.96 Aligned_cols=141 Identities=21% Similarity=0.198 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHhhccCChh------------HHHHHHHHHHH
Q 005378 436 RIQRIADERTAKAGELEQKVAM-------LEVECATLQQELQDMEARLKRGQKKSPE------------EANQAIQAWQD 496 (699)
Q Consensus 436 ~lQrkL~EEk~ra~eLeqQ~sm-------Le~dl~qLkQeLqd~e~~~~r~qqk~~~------------~~~qei~~lee 496 (699)
.++..|.-+|..+.+|..-+.| +=..|..|+.++.++-.+.+++++.... --..=+++|-.
T Consensus 1083 kl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~alaa 1162 (1320)
T PLN03188 1083 KQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESKFINALAA 1162 (1320)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 4555677777777777765555 3345677777888888888887753211 01113466777
Q ss_pred HHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhc--chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 497 EVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHY--SREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEF 574 (699)
Q Consensus 497 El~r~r~~~~~le~~l~~lE~elqkLr~e~~~lq~qleq~--~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~ 574 (699)
|+..+|. ..|.|-..|+.+-+.||-||-.. -.+..++|=-||++--+-+.--|.+.-.+..|..-+-.
T Consensus 1163 e~s~l~~----------ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k 1232 (1320)
T PLN03188 1163 EISALKV----------EREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYK 1232 (1320)
T ss_pred HHHHHHH----------HHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776665 44677778888877777666522 23457889999999999998888888889999999999
Q ss_pred HHHHHHHHHHHH
Q 005378 575 QLEKEMNRLQEV 586 (699)
Q Consensus 575 qLE~~~~~a~~~ 586 (699)
|++++..+++.+
T Consensus 1233 ~~~klkrkh~~e 1244 (1320)
T PLN03188 1233 QIDKLKRKHENE 1244 (1320)
T ss_pred HHHHHHHHHHHH
Confidence 999999888655
No 172
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.91 E-value=44 Score=40.32 Aligned_cols=64 Identities=23% Similarity=0.063 Sum_probs=41.3
Q ss_pred HhhhhcCCCCchhhhhHHHHHHHHHhhhhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 005378 237 QQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLV 300 (699)
Q Consensus 237 ~~~~k~~~k~~~lqkQLeE~n~~LrsE~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~ 300 (699)
++-.|++.++..++.+..--+..++.--..++-.+.++.+-++++++......-..+++++...
T Consensus 158 ~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~ 221 (716)
T KOG4593|consen 158 TLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERAD 221 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666555556666777777777777777766666666666544
No 173
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=90.87 E-value=60 Score=41.84 Aligned_cols=58 Identities=9% Similarity=-0.030 Sum_probs=35.6
Q ss_pred hhhhHhHhHHhhcchhHHHHH-HHHHHHHHHHHHHHHHhhccchh---hhhhHHHHHhhccc
Q 005378 637 DSGAVRATRFLWRYPIARIIL-LFYLVFVHLFLMYLLHRLQEQAD---NFAAREVAESMGLT 694 (699)
Q Consensus 637 Ds~slr~g~fLRRyP~aRl~~-l~Y~vlLHlWVm~vL~~~~~~~~---~~~~~~~~~~~~~~ 694 (699)
+.|+.--|++=+-=|+.++=- .+--++-||-=+|=+.+++.--. -+|++-..+.+|.+
T Consensus 1202 Etf~snCgvLALDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHDE~fv~~i~~~ 1263 (1294)
T KOG0962|consen 1202 ETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHDEDFVQLLGRS 1263 (1294)
T ss_pred HHHhhccccccccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehHHHHHHHhhhc
Confidence 677777888888888887632 33344555555666666554422 23666666666655
No 174
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=90.87 E-value=14 Score=34.65 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 390 ALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEA 430 (699)
Q Consensus 390 SLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenael 430 (699)
.|+..+.++...++.++ ..++++..|+.+-+..++.+
T Consensus 62 eLqaki~ea~~~le~eK----~ak~~l~~r~~k~~~dka~l 98 (107)
T PF09304_consen 62 ELQAKIDEARRNLEDEK----QAKLELESRLLKAQKDKAIL 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhHH
Confidence 33333444444444332 23444444555555544333
No 175
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=90.82 E-value=44 Score=40.25 Aligned_cols=74 Identities=18% Similarity=0.301 Sum_probs=46.9
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhhhcch------------------------hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 510 NKLSSLEAEVQKMRVEMAAMKRDAEHYSR------------------------EEHMELEKRYRELTDLLYYKQTQLETM 565 (699)
Q Consensus 510 ~~l~~lE~elqkLr~e~~~lq~qleq~~~------------------------~~~~ele~rl~eLte~L~eKQ~qlE~L 565 (699)
..+..++.....||+++..++..+.+-.. ..-.-|+..++.|+-++..|..-++.|
T Consensus 534 kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeL 613 (786)
T PF05483_consen 534 KQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEEL 613 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 44556677777777776666644442100 012345556777777778888888888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005378 566 ASEKAAAEFQLEKEMNRL 583 (699)
Q Consensus 566 ~~Er~sL~~qLE~~~~~a 583 (699)
..++.+|.-++-...++.
T Consensus 614 qqeNk~LKKk~~aE~kq~ 631 (786)
T PF05483_consen 614 QQENKALKKKITAESKQS 631 (786)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888887776655443
No 176
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=90.79 E-value=51 Score=40.90 Aligned_cols=14 Identities=14% Similarity=0.306 Sum_probs=6.3
Q ss_pred chhhhhHHHHHHHH
Q 005378 247 TKEQDQLDEAQGLL 260 (699)
Q Consensus 247 ~~lqkQLeE~n~~L 260 (699)
..++.++..++..+
T Consensus 325 ~~~~~~~~~~~~~~ 338 (908)
T COG0419 325 KSLEERLEKLEEKL 338 (908)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444444
No 177
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=90.03 E-value=64 Score=40.84 Aligned_cols=10 Identities=30% Similarity=0.395 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 005378 463 ATLQQELQDM 472 (699)
Q Consensus 463 ~qLkQeLqd~ 472 (699)
..+++++..|
T Consensus 780 ~~l~~~i~~~ 789 (1047)
T PRK10246 780 TQLEQLKQNL 789 (1047)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 178
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=90.01 E-value=34 Score=37.57 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 556 YYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEA 590 (699)
Q Consensus 556 ~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~~~~~~~ 590 (699)
-.+..+++.|..|....+..++.+..++++...++
T Consensus 274 ~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~~~ 308 (362)
T TIGR01010 274 NEQTADYQRLVLQNELAQQQLKAALTSLQQTRVEA 308 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777888888888888888888877776544
No 179
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=89.74 E-value=29 Score=36.40 Aligned_cols=21 Identities=14% Similarity=0.272 Sum_probs=8.4
Q ss_pred HhhhhhHHHHHHHHHHHHHHH
Q 005378 278 CAGLSSRLQEYKSENAQLEEL 298 (699)
Q Consensus 278 ~aRLrK~~~ELkke~aqLEe~ 298 (699)
.++.++.+..+..+...+...
T Consensus 37 ~~~sQ~~id~~~~e~~~L~~e 57 (251)
T PF11932_consen 37 AQQSQKRIDQWDDEKQELLAE 57 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433
No 180
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=89.21 E-value=51 Score=38.55 Aligned_cols=133 Identities=15% Similarity=0.150 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHH
Q 005378 308 SYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRM 387 (699)
Q Consensus 308 ~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~ 387 (699)
.|+.++..+..+...++.+....+.+..-=-...+..-.++..++.-++..+.+..+.|+....++.+.+++.+.+..+
T Consensus 163 aL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsq- 241 (596)
T KOG4360|consen 163 ALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQ- 241 (596)
T ss_pred HHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4555666666666666665555433211111123333447778888888888888888899999999999998888888
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 388 IQALREELASVERRAE---EERAAHNATKMAAMEREVELEHRAAEASMALARIQRIA 441 (699)
Q Consensus 388 lqSLE~eLkslQ~aLe---~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL 441 (699)
+..++++++.+-..-+ .-+.+++..+.+..+-+.++|...++...-+.+.|..|
T Consensus 242 l~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeEL 298 (596)
T KOG4360|consen 242 LVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEEL 298 (596)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766655433221 12333344444444455555555544443333333333
No 181
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=89.19 E-value=39 Score=37.16 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 307 RSYEARIKQLEQELSVYKSEVTKVES 332 (699)
Q Consensus 307 ~~Lq~kl~qLQ~EL~~eQ~er~q~es 332 (699)
..|+.++..|+.+...++.+..++..
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~ 188 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKT 188 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 46666777777777777777777654
No 182
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=89.14 E-value=65 Score=39.64 Aligned_cols=51 Identities=22% Similarity=0.240 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 005378 352 IDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAE 403 (699)
Q Consensus 352 L~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe 403 (699)
|+.-...+..+...-+.+..+..-|+.++...+|+ ..+|.+++..++--|+
T Consensus 115 l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eke-n~~Lkye~~~~~kele 165 (769)
T PF05911_consen 115 LQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKE-NSSLKYELHVLSKELE 165 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 33333334444444444444445555555555555 5555555555554443
No 183
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=89.07 E-value=48 Score=38.09 Aligned_cols=80 Identities=13% Similarity=0.116 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Q 005378 514 SLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQL---------ETMASEKAAAEFQLEKEMNRLQ 584 (699)
Q Consensus 514 ~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~ql---------E~L~~Er~sL~~qLE~~~~~a~ 584 (699)
.++.++..++.++..++..+. |.++.-..++.||..|..++..-...+ -....|-..|..+.+-+...+.
T Consensus 290 ~Le~qLa~~~aeL~~L~~~~~-p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~le~efAe~~y~ 368 (434)
T PRK15178 290 GFETQLAEAKAEYAQLMVNGL-DQNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKARWE 368 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhcC-CCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555554443222 112234555666666666555443333 2345566667777777776666
Q ss_pred HHHHHHhhhh
Q 005378 585 EVQSEAERSR 594 (699)
Q Consensus 585 ~~~~~~~~sr 594 (699)
.+.+..+.+|
T Consensus 369 sAlaaLE~AR 378 (434)
T PRK15178 369 SALQTLQQGK 378 (434)
T ss_pred HHHHHHHHHH
Confidence 6655555544
No 184
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=88.86 E-value=25 Score=34.49 Aligned_cols=40 Identities=20% Similarity=0.313 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHH
Q 005378 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (699)
Q Consensus 347 eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke 386 (699)
.|+.++..|+.++..+......+..+....+..+..+..+
T Consensus 21 sle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~e 60 (140)
T PF10473_consen 21 SLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEE 60 (140)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444333333
No 185
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=88.83 E-value=30 Score=35.43 Aligned_cols=65 Identities=18% Similarity=0.279 Sum_probs=34.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHH
Q 005378 337 ALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRA 402 (699)
Q Consensus 337 aLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aL 402 (699)
.|+.|..-++.|+..+.+++.-+......|...+........-......+ +..|..-|+.++..+
T Consensus 61 aL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q-~~~L~~~l~~a~~nl 125 (188)
T PF05335_consen 61 ALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQ-LETLKAALKAAQANL 125 (188)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555544444444 455555555555444
No 186
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=88.55 E-value=20 Score=34.58 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 390 ALREELASVERRAEEERAAHNATKM 414 (699)
Q Consensus 390 SLE~eLkslQ~aLe~E~~aHk~Tk~ 414 (699)
.++..+++++..+..+.....-++.
T Consensus 98 ~l~~~~~~~~~~~k~~kee~~klk~ 122 (151)
T PF11559_consen 98 QLQKQLKSLEAKLKQEKEELQKLKN 122 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555554444444
No 187
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=88.38 E-value=18 Score=40.37 Aligned_cols=52 Identities=12% Similarity=0.216 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 286 QEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEA 337 (699)
Q Consensus 286 ~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~ea 337 (699)
.+++....|.-................+..|+.++...-......+.-+..+
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~q 267 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQ 267 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555554444444445555555555555555444444444433333
No 188
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=88.21 E-value=8.6 Score=45.38 Aligned_cols=87 Identities=21% Similarity=0.305 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 005378 282 SSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAAL 361 (699)
Q Consensus 282 rK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r 361 (699)
.+.+..+......|++.+++|+..+..++..+..|..+|++.+.+.... ..++-++..+..+|..|+..|..
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~--------~~~~rei~~~~~~I~~L~~~L~e 492 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDK--------VRKDREIRARDRRIERLEKELEE 492 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444333311 11444555555555555555555
Q ss_pred HHHHHHHHHHHHHHH
Q 005378 362 SEGNLASLQMNMESI 376 (699)
Q Consensus 362 ~k~rLeelq~E~~~L 376 (699)
.+.+.+.+...+..+
T Consensus 493 ~~~~ve~L~~~l~~l 507 (652)
T COG2433 493 KKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555554444444333
No 189
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=88.17 E-value=44 Score=36.53 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=20.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005378 280 GLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSV 322 (699)
Q Consensus 280 RLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~ 322 (699)
.|++...++...+--+-..++.++++-+.|..++..+-.....
T Consensus 17 ~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~e 59 (294)
T COG1340 17 QLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQE 59 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555444444444444445555544444433333
No 190
>PLN02939 transferase, transferring glycosyl groups
Probab=88.08 E-value=84 Score=39.64 Aligned_cols=165 Identities=16% Similarity=0.228 Sum_probs=82.6
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 005378 388 IQALREE---LASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECAT 464 (699)
Q Consensus 388 lqSLE~e---LkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~q 464 (699)
+..++++ |+.--+.+..+..+...|.. |...+|.++.-|..++.+++.++..-..-+..| +-|+.++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-- 297 (977)
T PLN02939 228 LDVLKEENMLLKDDIQFLKAELIEVAETEE----RVFKLEKERSLLDASLRELESKFIVAQEDVSKL----SPLQYDC-- 297 (977)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc----cchhHHH--
Confidence 6666655 44444445555666666666 899999999999999999999997665433332 2344443
Q ss_pred HHHHHHHHHHHHHhhccCChh--HHHHHHHHHHHHHHHHHHhHHHHH-HhhhhHHHHHHHHHHHHHHHHHhhhhcchhhh
Q 005378 465 LQQELQDMEARLKRGQKKSPE--EANQAIQAWQDEVERARQGQRDAE-NKLSSLEAEVQKMRVEMAAMKRDAEHYSREEH 541 (699)
Q Consensus 465 LkQeLqd~e~~~~r~qqk~~~--~~~qei~~leeEl~r~r~~~~~le-~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~ 541 (699)
+-.+.+.++.-+.+....+-. ...++..-|...+..+...+..+- -+++ -..+..|+..++.+...+ ....
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~ 371 (977)
T PLN02939 298 WWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFS--SYKVELLQQKLKLLEERL----QASD 371 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhHhhhh--HHHHHHHHHHHHHHHHHH----HhhH
Confidence 333333333333332211111 011111233333443433332111 1111 112233334444444332 2234
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 542 MELEKRYRELTDLLYYKQTQLETMASE 568 (699)
Q Consensus 542 ~ele~rl~eLte~L~eKQ~qlE~L~~E 568 (699)
.++..+++--.+.+.+=|..+..|..|
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (977)
T PLN02939 372 HEIHSYIQLYQESIKEFQDTLSKLKEE 398 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556666666666666666666666654
No 191
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=87.96 E-value=36 Score=35.32 Aligned_cols=40 Identities=28% Similarity=0.303 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 005378 433 ALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDM 472 (699)
Q Consensus 433 ALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~ 472 (699)
.+..|+..|+..++.+.-|+.++..++.++..|+..+...
T Consensus 67 ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 67 ELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred hHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 3456777888888888999999999999999999988765
No 192
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=87.77 E-value=55 Score=37.17 Aligned_cols=86 Identities=23% Similarity=0.288 Sum_probs=43.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCC--hhHHHHHH-HHHHHHHHHHHHhH---------------H--H
Q 005378 448 AGELEQKVAMLEVECATLQQELQDMEARLKRGQKKS--PEEANQAI-QAWQDEVERARQGQ---------------R--D 507 (699)
Q Consensus 448 a~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~qqk~--~~~~~qei-~~leeEl~r~r~~~---------------~--~ 507 (699)
...|..|.+-...+-.-|-|.++.-..-+++-+... ..-.||++ ..|-+||.++|-.+ . .
T Consensus 430 LeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtGsplaqgkdayE 509 (593)
T KOG4807|consen 430 LEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTGSPLAQGKDAYE 509 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCCCccccCcchhh
Confidence 334444444433333444444433333333333221 22245544 56777787776431 1 1
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhh
Q 005378 508 AENKLSSLEAEVQKMRVEMAAMKRDA 533 (699)
Q Consensus 508 le~~l~~lE~elqkLr~e~~~lq~ql 533 (699)
++-=|.-.|.+|+.|+.++..+++-|
T Consensus 510 LEVLLRVKEsEiQYLKqEissLkDEL 535 (593)
T KOG4807|consen 510 LEVLLRVKESEIQYLKQEISSLKDEL 535 (593)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 22334567888888888887777544
No 193
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.63 E-value=66 Score=37.95 Aligned_cols=87 Identities=18% Similarity=0.214 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHH
Q 005378 317 EQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELA 396 (699)
Q Consensus 317 Q~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLk 396 (699)
|+-++.+...+..-+.+..+.+....-++.+|...++.++..+......+-.+++++.+|.--. -.+..+|+
T Consensus 312 er~IerLkeqr~rderE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~g--------lk~ds~Lk 383 (654)
T KOG4809|consen 312 ERIIERLKEQRERDERERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAG--------LKRDSKLK 383 (654)
T ss_pred HHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhhhhhhh
Confidence 4566666666666666667777777778888888888877777777666666666666654433 33445577
Q ss_pred HHHHHHHHHHHHHHH
Q 005378 397 SVERRAEEERAAHNA 411 (699)
Q Consensus 397 slQ~aLe~E~~aHk~ 411 (699)
+++-+|++......-
T Consensus 384 ~leIalEqkkEec~k 398 (654)
T KOG4809|consen 384 SLEIALEQKKEECSK 398 (654)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777765554433
No 194
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=87.55 E-value=75 Score=38.50 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 341 KNSEIETLVSSIDALKKQAALSEGNLASLQ 370 (699)
Q Consensus 341 k~sEi~eLe~RL~~LeqeL~r~k~rLeelq 370 (699)
|+.+...|-..++.|+.+=..+...++-++
T Consensus 240 we~Er~~L~~tVq~L~edR~~L~~T~ELLq 269 (739)
T PF07111_consen 240 WEPEREELLETVQHLQEDRDALQATAELLQ 269 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555444333333333333
No 195
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=87.47 E-value=57 Score=37.04 Aligned_cols=42 Identities=24% Similarity=0.264 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHH
Q 005378 308 SYEARIKQLEQELSVYKSEVTKVES-NLAEALAAKNSEIETLV 349 (699)
Q Consensus 308 ~Lq~kl~qLQ~EL~~eQ~er~q~es-~~~eaLaak~sEi~eLe 349 (699)
..+.++..||....++-..+.+.++ .+.+..++--+-|+.|+
T Consensus 349 tHQkkiEdLQRqHqRELekLreEKdrLLAEETAATiSAIEAMK 391 (593)
T KOG4807|consen 349 THQKKIEDLQRQHQRELEKLREEKDRLLAEETAATISAIEAMK 391 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Confidence 3344667776665554444444444 23333333334444444
No 196
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=87.18 E-value=42 Score=36.43 Aligned_cols=58 Identities=29% Similarity=0.326 Sum_probs=47.3
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005378 537 SREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSR 594 (699)
Q Consensus 537 ~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~~~~~~~~~sr 594 (699)
....+..|++.-.-|+-.|.-|..++--|..-.++-..++++++..+.....+++++.
T Consensus 72 l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ 129 (307)
T PF10481_consen 72 LMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQ 129 (307)
T ss_pred HHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455778888888899999999999999999999999999988877777767777655
No 197
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=87.18 E-value=8.2 Score=42.18 Aligned_cols=118 Identities=23% Similarity=0.334 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhcc
Q 005378 458 LEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYS 537 (699)
Q Consensus 458 Le~dl~qLkQeLqd~e~~~~r~qqk~~~~~~qei~~leeEl~r~r~~~~~le~~l~~lE~elqkLr~e~~~lq~qleq~~ 537 (699)
|+..+..+..+...|..-+........ ....+..+..|+..+......+..+|..++.+...+..++..++......-
T Consensus 14 l~~~~~~~~~E~~~Y~~fL~~l~~~~~--~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 14 LDKQLEQAEKERDTYQEFLKKLEEESD--SEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp ------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443331111 111234444455444444444445555666666666666655554322211
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 538 REEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE 585 (699)
Q Consensus 538 ~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~~ 585 (699)
..+..|-..++.+.-++.+ +..|+.++..|++.+...++.
T Consensus 92 -~eE~~~~~~~n~~~~~l~~-------~~~e~~sl~~q~~~~~~~L~~ 131 (314)
T PF04111_consen 92 -EEEEEYWREYNELQLELIE-------FQEERDSLKNQYEYASNQLDR 131 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 1122344444444444444 444555555555555444443
No 198
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=87.14 E-value=25 Score=37.99 Aligned_cols=75 Identities=12% Similarity=0.150 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 005378 391 LREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQEL 469 (699)
Q Consensus 391 LE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeL 469 (699)
.++.|.+++.+|...+..+..-+. ..+.|..+|+.|.+...++++.-+-=.-.+.-.+.++..|+-.+...+..+
T Consensus 37 rQfQleSlEAaLqKQKqK~e~ek~----e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqi 111 (307)
T PF10481_consen 37 RQFQLESLEAALQKQKQKVEEEKN----EYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQI 111 (307)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhh----hhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 446677777777776666666655 456677788888887777776544433344444444444444444444433
No 199
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=86.99 E-value=80 Score=38.21 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 005378 541 HMELEKRYRELTDLLYYKQ 559 (699)
Q Consensus 541 ~~ele~rl~eLte~L~eKQ 559 (699)
.++.++++++|-+.|...+
T Consensus 379 ite~~tklk~l~etl~~~~ 397 (716)
T KOG4593|consen 379 ITEEETKLKELHETLARRL 397 (716)
T ss_pred hhhhhHHHHHHHHHHHHHH
Confidence 4666777777776654443
No 200
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=86.87 E-value=42 Score=34.89 Aligned_cols=86 Identities=20% Similarity=0.235 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--------HHHHHHhHhhhh
Q 005378 312 RIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI-DALKKQAALSEGNLASLQ--------MNMESIMRNREL 382 (699)
Q Consensus 312 kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL-~~LeqeL~r~k~rLeelq--------~E~~~L~e~~s~ 382 (699)
++.+||.+|..+|......+. |+.|| ..|+++|+.++.+-.... .....|++.+.+
T Consensus 4 kv~~LQ~AL~~LQaa~ekRE~---------------lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrE 68 (205)
T PF12240_consen 4 KVERLQQALAQLQAACEKREQ---------------LERRLRTRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLRE 68 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHH
Confidence 567777777777777666543 22333 445566655553322111 235567778888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 383 TETRMIQALREELASVERRAEEERAAHNATKM 414 (699)
Q Consensus 383 ~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ 414 (699)
.+.+ +=+|+.++--.++.| +|...-++..+
T Consensus 69 kEEr-ILaLEad~~kWEqkY-LEEs~mrq~a~ 98 (205)
T PF12240_consen 69 KEER-ILALEADMTKWEQKY-LEESAMRQFAM 98 (205)
T ss_pred HHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 8888 667888888888888 55444444433
No 201
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=86.81 E-value=85 Score=38.34 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=10.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 305 LSRSYEARIKQLEQELSVYKSEVTKV 330 (699)
Q Consensus 305 k~~~Lq~kl~qLQ~EL~~eQ~er~q~ 330 (699)
+...|...+.+.-.+|..++.++...
T Consensus 566 rv~~Lk~~~e~Ql~~L~~l~e~~~~l 591 (717)
T PF10168_consen 566 RVKLLKQQKEQQLKELQELQEERKSL 591 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444333333
No 202
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=86.64 E-value=50 Score=35.52 Aligned_cols=62 Identities=15% Similarity=0.236 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 350 SSIDALKKQAALSEGNLASLQMNMESIMRNREL----TETRMIQALREELASVERRAEEERAAHNAT 412 (699)
Q Consensus 350 ~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~----~Eke~lqSLE~eLkslQ~aLe~E~~aHk~T 412 (699)
..+..|++++..+..++.+.+.+..-|..=-.- ..=+ +++|...|..+.-.-..|..+-+.+
T Consensus 81 ~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vq-Ia~L~rqlq~lk~~qqdEldel~e~ 146 (258)
T PF15397_consen 81 SKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQ-IANLVRQLQQLKDSQQDELDELNEM 146 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554443321111 1223 5555555555555555555554444
No 203
>PLN02939 transferase, transferring glycosyl groups
Probab=86.62 E-value=1e+02 Score=38.99 Aligned_cols=105 Identities=18% Similarity=0.172 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhHHHHHHHHHHHHH
Q 005378 286 QEYKSENAQLEELLVAERELSR---SYEARIKQLEQELSVYKSEVTKVESN-------LAEALAAKNSEIETLVSSIDAL 355 (699)
Q Consensus 286 ~ELkke~aqLEe~l~elqek~~---~Lq~kl~qLQ~EL~~eQ~er~q~es~-------~~eaLaak~sEi~eLe~RL~~L 355 (699)
+.|+.+..-||..+.+..++.. .-.....-|+.+|+.++.++.+.... +...+.....+.-.|+..|+.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (977)
T PLN02939 166 EALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFL 245 (977)
T ss_pred HHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhccccccccccccHHHHHHHHHHHhHHHHHHHHHH
Confidence 3445555555554444322221 11113444556666666666554332 4556666666666777777776
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHhHhhhhhHHHHHHH
Q 005378 356 KKQAAL---SEGNLASLQMNMESIMRNRELTETRMIQA 390 (699)
Q Consensus 356 eqeL~r---~k~rLeelq~E~~~L~e~~s~~Eke~lqS 390 (699)
..++.. ..+++-.++-|..-|...+.++|...+.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (977)
T PLN02939 246 KAELIEVAETEERVFKLEKERSLLDASLRELESKFIVA 283 (977)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666443 33445555555555555555555553333
No 204
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=86.41 E-value=68 Score=36.83 Aligned_cols=67 Identities=21% Similarity=0.206 Sum_probs=47.4
Q ss_pred hhHHHhhhhcCCCCchhhhhHHHHHHHHHhh----hhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 005378 233 NKRKQQALKADDPPTKEQDQLDEAQGLLKTT----ISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELL 299 (699)
Q Consensus 233 ~~~~~~~~k~~~k~~~lqkQLeE~n~~LrsE----~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l 299 (699)
-+.+.|+..|.+.+.--++-=.|+-+++--| ++.++++..+|..-...||.-++.++.....|+...
T Consensus 264 Eq~reqElraeE~l~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlksl~dklaee~ 334 (502)
T KOG0982|consen 264 EQRREQELRAEESLSEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEED 334 (502)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5667777888888877777777777777655 566777777777777777777777666666555543
No 205
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=86.38 E-value=73 Score=37.13 Aligned_cols=85 Identities=14% Similarity=0.188 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 005378 388 IQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQ 467 (699)
Q Consensus 388 lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQ 467 (699)
+..++.++..++.+++.++..|.. +...++.....|.....++-.++=+++.+--. ++.-..++.-+.-++.
T Consensus 76 ~~~~~~~~~~l~~~le~~~~~~~e-------k~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~-~~~~~~l~~ll~Pl~e 147 (475)
T PRK10361 76 NTSLEADLREVTTRMEAAQQHADD-------KIRQMINSEQRLSEQFENLANRIFEHSNRRVD-EQNRQSLNSLLSPLRE 147 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHH
Confidence 344444455555555555544422 33445555555566565555555555533222 2333446777788888
Q ss_pred HHHHHHHHHHhhc
Q 005378 468 ELQDMEARLKRGQ 480 (699)
Q Consensus 468 eLqd~e~~~~r~q 480 (699)
.|..++.+.....
T Consensus 148 ~l~~f~~~v~~~~ 160 (475)
T PRK10361 148 QLDGFRRQVQDSF 160 (475)
T ss_pred HHHHHHHHHHHHH
Confidence 8888887777554
No 206
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=86.26 E-value=27 Score=39.12 Aligned_cols=45 Identities=16% Similarity=0.259 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHH
Q 005378 343 SEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRM 387 (699)
Q Consensus 343 sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~ 387 (699)
.-++.+..-.......+...+..|.++..+.....+++...|+.+
T Consensus 220 ~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~i 264 (359)
T PF10498_consen 220 SHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYI 264 (359)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555567777777778888888888887777773
No 207
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=86.24 E-value=29 Score=38.00 Aligned_cols=57 Identities=23% Similarity=0.207 Sum_probs=37.9
Q ss_pred cCCCCchhhhhHHHHHHHHHhhhhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005378 242 ADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERE 304 (699)
Q Consensus 242 ~~~k~~~lqkQLeE~n~~LrsE~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqe 304 (699)
|-++....-+.|++++.+|+.=+.. +|..+.+++.+.+.+.++.++.++..+..++.
T Consensus 46 Ar~~A~~fA~~ld~~~~kl~~Ms~~------ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~ 102 (301)
T PF06120_consen 46 ARQEAIEFADSLDELKEKLKEMSST------QLRANIAKAEESIAAQKRAIEDLQKKIDSLKD 102 (301)
T ss_pred HHHHHHHHHHhhHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777889999888877653 66666777777777666666666664444333
No 208
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=85.95 E-value=80 Score=37.21 Aligned_cols=252 Identities=18% Similarity=0.211 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHH-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 005378 279 AGLSSRLQEYKSENAQLEELLV-----AERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSID 353 (699)
Q Consensus 279 aRLrK~~~ELkke~aqLEe~l~-----elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~ 353 (699)
..|+++.+.|+-+......++. ++.+.+..++.++..+=.-|+.+=+.+...+. .+.
T Consensus 251 ~~id~~~~~L~~~l~~~~~~l~~Leld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~------------------~~~ 312 (570)
T COG4477 251 VNIDSRLERLKEQLVENSELLTQLELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEE------------------NLP 312 (570)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------cCc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 354 ALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR---EELASVERRAEEERAAHNATKMAAMEREVELEHRAAEA 430 (699)
Q Consensus 354 ~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE---~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenael 430 (699)
-+-.-+...+.....+.++..++.+.--..+.+ +...+ .+|+++...+..-...-..-.. +.+.++..-..+
T Consensus 313 ~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e-~~~vr~~e~eL~el~~~~~~i~~~~~~~~~----~yS~lq~~l~~~ 387 (570)
T COG4477 313 ILPDYLEKAKENNEHLKEEIERVKESYRLAETE-LGSVRKFEKELKELESVLDEILENIEAQEV----AYSELQDNLEEI 387 (570)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccChhH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc----cHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh-ccCChh-------HHHHHHHHHHHHHHHHH
Q 005378 431 SMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRG-QKKSPE-------EANQAIQAWQDEVERAR 502 (699)
Q Consensus 431 seALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~-qqk~~~-------~~~qei~~leeEl~r~r 502 (699)
.++|+.++.+-..=...+..|++-=.....++..++.+|....+...+. ....|. .+...++.+-.++.+..
T Consensus 388 ~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~mek~nLPGlPe~~l~l~~~~~~~i~~l~~eLse~p 467 (570)
T COG4477 388 EKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYMEKSNLPGLPETFLSLFFTAGHEIQDLMKELSEVP 467 (570)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhhhhHHHHHHHHHhhcC
Q ss_pred HhHHHHHHhhhhHHHHHHHHHHHHHHHH------HhhhhcchhhhhHHHHHHHHHHHHHHH
Q 005378 503 QGQRDAENKLSSLEAEVQKMRVEMAAMK------RDAEHYSREEHMELEKRYRELTDLLYY 557 (699)
Q Consensus 503 ~~~~~le~~l~~lE~elqkLr~e~~~lq------~qleq~~~~~~~ele~rl~eLte~L~e 557 (699)
=..+..-..+...+..+..+..+..++- .++=|| ..-|.++...+.+.|-+
T Consensus 468 inm~~v~~~v~~a~~~m~~l~~~t~e~ve~a~LaE~lIQY----~NRYRs~~~~v~~~l~e 524 (570)
T COG4477 468 INMEAVSALVDIATEDMNTLEDETEEVVENAVLAEQLIQY----GNRYRSRNAEVAKSLNE 524 (570)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhHHHHHHHHH
No 209
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=85.89 E-value=8 Score=32.82 Aligned_cols=60 Identities=27% Similarity=0.366 Sum_probs=47.3
Q ss_pred HHHHHHHhhhhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005378 255 EAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKS 325 (699)
Q Consensus 255 E~n~~LrsE~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~ 325 (699)
+++.-|.+|+-+ ..-|.+.+...+..+-..+..|.+...+.+.|..++..|..+++.+|+
T Consensus 1 elQsaL~~Eira-----------kQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 1 ELQSALEAEIRA-----------KQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CHHhHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355567777774 777778888888888888988888888888888888888888877664
No 210
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=85.85 E-value=24 Score=41.93 Aligned_cols=93 Identities=20% Similarity=0.313 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 351 SIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEA 430 (699)
Q Consensus 351 RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenael 430 (699)
.+......+......+++++.+++.|...+..+.+. +..|+.+|..+...+..+...-+..+ .+
T Consensus 416 ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~e-ie~L~~~l~~~~r~~~~~~~~~rei~---------------~~ 479 (652)
T COG2433 416 EITVYEKRIKKLEETVERLEEENSELKRELEELKRE-IEKLESELERFRREVRDKVRKDREIR---------------AR 479 (652)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHH---------------HH
Confidence 333444445555555555666666666666555555 67777777777766654332211111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 005378 431 SMALARIQRIADERTAKAGELEQKVAMLE 459 (699)
Q Consensus 431 seALa~lQrkL~EEk~ra~eLeqQ~smLe 459 (699)
..-+..++++|.+++.++.+|+.++..+.
T Consensus 480 ~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 480 DRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566888899999999988888766554
No 211
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=85.47 E-value=93 Score=38.19 Aligned_cols=44 Identities=32% Similarity=0.387 Sum_probs=32.9
Q ss_pred HhhhhHHHHhhhhhcccCCCC----CCCCCCCcchhhhhchHHHhhhh
Q 005378 15 VDRRAKLVVNELADEQSDFQT----PASNGQGSQAKKIKSRIKAQRRH 58 (699)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~q~k~~~~~~~~~~~~ 58 (699)
.||=|-|.-.=|--|.+.+-. +-+|+..=.+|+-.+||||-+++
T Consensus 12 LDrCAsLL~dILrnE~sGsE~~yse~r~nsrplegK~~~~KKKG~~Kh 59 (861)
T PF15254_consen 12 LDRCASLLRDILRNEDSGSETVYSENRSNSRPLEGKRNGSKKKGPEKH 59 (861)
T ss_pred hHHHHHHHHHhhhcccCCCcccccccccCCCcCCcccccccCCCCccc
Confidence 588888888878777774322 24677777788888999999888
No 212
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=85.33 E-value=99 Score=37.72 Aligned_cols=40 Identities=28% Similarity=0.380 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHH
Q 005378 353 DALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR 392 (699)
Q Consensus 353 ~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE 392 (699)
+.++..|.+-...+-...+-+.+|++.++..|.+.-++++
T Consensus 94 dklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r 133 (916)
T KOG0249|consen 94 DKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR 133 (916)
T ss_pred HHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh
Confidence 3333444444444444444445555555544444333333
No 213
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=85.06 E-value=44 Score=33.43 Aligned_cols=120 Identities=16% Similarity=0.160 Sum_probs=76.2
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 005378 278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELS-----VYKSEVTKVESNLAEALAAKNSEIETLVSSI 352 (699)
Q Consensus 278 ~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~-----~eQ~er~q~es~~~eaLaak~sEi~eLe~RL 352 (699)
+.+|++.+.+++.+..+.=..+..+....+....++......+. ..+..+....+ +.-.|..+..+-..|..|.
T Consensus 29 ~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~-lQ~~L~~~re~E~qLr~rR 107 (159)
T PF05384_consen 29 YERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHE-LQVRLAMLREREKQLRERR 107 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555556666666666666652 34555666654 6667777777777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHH
Q 005378 353 DALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVE 399 (699)
Q Consensus 353 ~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ 399 (699)
+.|+..+..++..+++++.-..++---++-+... +..+-..|.+++
T Consensus 108 D~LErrl~~l~~tierAE~l~sqi~vvl~yL~~d-l~~v~~~~e~~~ 153 (159)
T PF05384_consen 108 DELERRLRNLEETIERAENLVSQIGVVLNYLSGD-LQQVSEQIEDAQ 153 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHH
Confidence 8888888888888877777777766666555555 444444444444
No 214
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=84.80 E-value=88 Score=36.71 Aligned_cols=121 Identities=17% Similarity=0.179 Sum_probs=58.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHH
Q 005378 274 LARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAA-KNSEIETLVSSI 352 (699)
Q Consensus 274 La~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaa-k~sEi~eLe~RL 352 (699)
.+++.+++-+--.|+++..-..|.. .|..|+.....|+.-+......+-..+..+++.+.. |..-..-.+.++
T Consensus 169 ~arm~aqi~~l~eEmS~r~l~reak------l~~~lqk~f~alEk~mka~e~~rl~~E~~lreElE~rW~~lq~l~Ee~l 242 (531)
T PF15450_consen 169 VARMQAQITKLGEEMSLRFLKREAK------LCSFLQKSFLALEKRMKAQESSRLRTERSLREELESRWQKLQELTEERL 242 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555544444442 455777777777777777666666666655544332 233233333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005378 353 DALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEE 404 (699)
Q Consensus 353 ~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~ 404 (699)
.++....+- -+...+.+...+.+...-+-. ++..|+.-+...+..|+.
T Consensus 243 ~al~gq~ev---~~~~~~~E~~~l~eq~~~ld~-AV~~Ltk~v~~~q~sL~k 290 (531)
T PF15450_consen 243 RALQGQQEV---GLGGIQSEESKLLEQCRKLDE-AVAQLTKFVQQNQKSLNK 290 (531)
T ss_pred HHHHhhHhh---hhhhhhHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHH
Confidence 444433331 111223333334333322222 244455445555555554
No 215
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=84.41 E-value=94 Score=36.68 Aligned_cols=84 Identities=14% Similarity=0.215 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHhH--HHHH-HhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 491 IQAWQDEVERARQGQ--RDAE-NKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMAS 567 (699)
Q Consensus 491 i~~leeEl~r~r~~~--~~le-~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~ 567 (699)
...+..|+.+++..- ..-+ .....++.++..+.+....+...+.... .+-+.+...+.++.+.|.+=..+...+..
T Consensus 322 ~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~-~~yS~i~~~l~~~~~~l~~ie~~q~~~~~ 400 (560)
T PF06160_consen 322 NKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQ-VPYSEIQEELEEIEEQLEEIEEEQEEINE 400 (560)
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666665431 1111 2334566666666666655555444211 11234444555555555554444444444
Q ss_pred HHHHHHHH
Q 005378 568 EKAAAEFQ 575 (699)
Q Consensus 568 Er~sL~~q 575 (699)
....|...
T Consensus 401 ~l~~L~~d 408 (560)
T PF06160_consen 401 SLQSLRKD 408 (560)
T ss_pred HHHHHHHH
Confidence 44444433
No 216
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=84.22 E-value=94 Score=36.52 Aligned_cols=92 Identities=13% Similarity=0.137 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-H--------------HHHHHHHHHHHHHHHHHHH
Q 005378 306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVS-S--------------IDALKKQAALSEGNLASLQ 370 (699)
Q Consensus 306 ~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~-R--------------L~~LeqeL~r~k~rLeelq 370 (699)
+..+...+++|..-....++++...+..+..+|+.+...+....- | =+.++.++.++-.++.++-
T Consensus 101 Lvevre~L~~irr~q~~q~~erk~~~qe~~~rl~~L~~~Lrqee~~re~a~~aL~k~qe~~~~k~d~E~arm~aqi~~l~ 180 (531)
T PF15450_consen 101 LVEVREALTQIRRKQALQDSERKGSEQEAGLRLSKLQDMLRQEEQGREDACSALQKSQEEDSQKVDNEVARMQAQITKLG 180 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcchhhHHhhhhHHHHHHHHHHHHH
Confidence 334455666666666666677777777777777776666554332 2 2233344444555555555
Q ss_pred HHHHHHhHhhhh-----hHHHHHHHHHHHHHHH
Q 005378 371 MNMESIMRNREL-----TETRMIQALREELASV 398 (699)
Q Consensus 371 ~E~~~L~e~~s~-----~Eke~lqSLE~eLksl 398 (699)
+++..-.-+.+. +.+. ..+++..+++.
T Consensus 181 eEmS~r~l~reakl~~~lqk~-f~alEk~mka~ 212 (531)
T PF15450_consen 181 EEMSLRFLKREAKLCSFLQKS-FLALEKRMKAQ 212 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 554443332222 2444 33555555554
No 217
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=83.99 E-value=53 Score=33.45 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005378 420 EVELEHRAAEASMALARIQRIADERTAKAGELEQKVA 456 (699)
Q Consensus 420 e~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~s 456 (699)
+....++....+..|..+|.|+.+=+.++.+|+++++
T Consensus 4 l~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~ 40 (182)
T PF15035_consen 4 LDAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLS 40 (182)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444566677789999999999999999999999984
No 218
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=83.93 E-value=1.5e+02 Score=38.56 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q 005378 429 EASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKR 478 (699)
Q Consensus 429 elseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r 478 (699)
.+.+-+..++..+.-...++.++...+.-+..++..+..+..+++.+..+
T Consensus 882 qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~ 931 (1294)
T KOG0962|consen 882 QLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNT 931 (1294)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhH
Confidence 34444555555666666777777777777888888888888777777544
No 219
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=83.71 E-value=24 Score=38.57 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 351 SIDALKKQAALSEGNLASLQMNMESI 376 (699)
Q Consensus 351 RL~~LeqeL~r~k~rLeelq~E~~~L 376 (699)
.+..++++-......|.+++.+...+
T Consensus 51 el~~le~Ee~~l~~eL~~LE~e~~~l 76 (314)
T PF04111_consen 51 ELEKLEQEEEELLQELEELEKEREEL 76 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 220
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=82.16 E-value=93 Score=34.97 Aligned_cols=51 Identities=20% Similarity=0.218 Sum_probs=33.7
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005378 277 VCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEV 327 (699)
Q Consensus 277 ~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er 327 (699)
+..+|..++.+...=...|+..+.++.+-...|......|+..|.....-+
T Consensus 44 ~~~~L~~Ri~di~~wk~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~pl 94 (384)
T PF03148_consen 44 SNKRLRQRIRDIRFWKNELERELEELDEEIDLLEEEKRRLEKALEALRKPL 94 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence 456677777777777777777777666666666666666666666554333
No 221
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=81.94 E-value=18 Score=31.24 Aligned_cols=65 Identities=20% Similarity=0.135 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 005378 294 QLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALS 362 (699)
Q Consensus 294 qLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~ 362 (699)
.||..+..|+..++.+..++..-+.++..+..++... ..+|..+-.++..|+..++.+.++++..
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~----~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSA----ERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3677777778888888888888888888877666554 3455566777777777777777765544
No 222
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=81.26 E-value=27 Score=32.62 Aligned_cols=69 Identities=25% Similarity=0.367 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005378 515 LEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAE 591 (699)
Q Consensus 515 lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~~~~~~~~ 591 (699)
+-.+..+||.+...++.. -.+.......|++.|-.|-..|-.+..|..+|.|+-+.+..|....+-+..
T Consensus 3 la~eYsKLraQ~~vLKKa--------VieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKA--------VIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888887777742 244556778999999999999999999999999999999999888776664
No 223
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=81.11 E-value=59 Score=36.27 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=7.6
Q ss_pred HHHHHHHHHhhhhhHHHH
Q 005378 270 KEARLARVCAGLSSRLQE 287 (699)
Q Consensus 270 ke~qLa~~~aRLrK~~~E 287 (699)
++--|-..|.-+.+++.|
T Consensus 83 ~~eglr~i~es~~e~q~e 100 (401)
T PF06785_consen 83 KDEGLRKIRESVEERQQE 100 (401)
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 333444444444444433
No 224
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=81.04 E-value=68 Score=32.67 Aligned_cols=54 Identities=22% Similarity=0.238 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005378 351 SIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEE 405 (699)
Q Consensus 351 RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E 405 (699)
|-..|.+-...++..|+.+...|..|..++.-+-.+ ...++.+|..=+..+..|
T Consensus 75 R~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~-~~~l~~eL~~ke~~~~~e 128 (182)
T PF15035_consen 75 RSEELAQVNALLREQLEQARKANEALQEDLQKLTQD-WERLRDELEQKEAEWREE 128 (182)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 445555555667777777777777777777665555 555555555444444333
No 225
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=80.99 E-value=58 Score=32.60 Aligned_cols=130 Identities=17% Similarity=0.203 Sum_probs=60.9
Q ss_pred hhhchhHHHhhhhcCCCCchhhhhHHHHHHHHHhhhhccchHHHHHHHHHhhhhhHHHH----HHHHHHHHHHHHHHHHH
Q 005378 229 ETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQE----YKSENAQLEELLVAERE 304 (699)
Q Consensus 229 ~~~~~~~~~~~~k~~~k~~~lqkQLeE~n~~LrsE~etl~~ke~qLa~~~aRLrK~~~E----Lkke~aqLEe~l~elqe 304 (699)
.++++-+.+...+..+.+..+..-++++...|.........+..+|..-..+|+...+- ..-.+-++..-
T Consensus 7 ~~~~~rr~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f~i~~~~~~~~~------ 80 (158)
T PF09486_consen 7 RTLIQRRRRRERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMTGGAPFSIDEYLALRRY------ 80 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCccHHHHHHHHHH------
Confidence 34556666666666666666666555555555555443334444444444444433330 01112222222
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 305 LSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASL 369 (699)
Q Consensus 305 k~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeel 369 (699)
.+.+..++..++.++..++..+....+ +++.....|..+..+|+...+.+.++.-.++..
T Consensus 81 -r~~l~~~~~~~e~~~a~l~~~l~~~~~----~ia~~~raIarn~a~id~~~er~~~l~r~~ea~ 140 (158)
T PF09486_consen 81 -RDVLEERVRAAEAELAALRQALRAAED----EIAATRRAIARNDARIDVCRERIDRLRRAAEAA 140 (158)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 234444555555555554444444332 333344445555555555555555544444433
No 226
>PRK10698 phage shock protein PspA; Provisional
Probab=80.45 E-value=78 Score=33.01 Aligned_cols=88 Identities=17% Similarity=0.216 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 005378 312 RIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETL--------VSSIDALKKQAALSEGNLASLQMNMESIMRNRELT 383 (699)
Q Consensus 312 kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eL--------e~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~ 383 (699)
....++..+...+......+..-..+|.+++..++.- ...+..++.++......+.++......|...+...
T Consensus 53 ~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~ea 132 (222)
T PRK10698 53 EKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSET 132 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444332 34555555555555555555555555555555554
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005378 384 ETRMIQALREELASVER 400 (699)
Q Consensus 384 Eke~lqSLE~eLkslQ~ 400 (699)
..+ ...|--+.++++.
T Consensus 133 k~k-~~~L~aR~~~A~a 148 (222)
T PRK10698 133 RAR-QQALMLRHQAASS 148 (222)
T ss_pred HHH-HHHHHHHHHHHHH
Confidence 444 3444434444443
No 227
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=80.43 E-value=96 Score=34.03 Aligned_cols=37 Identities=22% Similarity=0.238 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 543 ELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKE 579 (699)
Q Consensus 543 ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~ 579 (699)
.+-..+.++.+.++..|..|..+.....+|....-..
T Consensus 218 e~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~~~ 254 (294)
T COG1340 218 ELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAA 254 (294)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556655555555555555555444443
No 228
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.13 E-value=1.3e+02 Score=35.35 Aligned_cols=44 Identities=14% Similarity=0.168 Sum_probs=36.2
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 536 YSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKE 579 (699)
Q Consensus 536 ~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~ 579 (699)
+|.++...+=.+|--|--.++.|...++-|..-...|...+++-
T Consensus 471 ~~qqDka~lierivrLQ~a~arknekiefLe~h~~qlveevQKk 514 (613)
T KOG0992|consen 471 SPQQDKADLIERIVRLQLAIARKNEKIEFLEQHLIQLVEEVQKK 514 (613)
T ss_pred chhhhhHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHH
Confidence 44566777888999999999999999999998888887777663
No 229
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=80.07 E-value=1.3e+02 Score=35.13 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 005378 421 VELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQEL 469 (699)
Q Consensus 421 ~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeL 469 (699)
.+++...+.|-++++..|+.|+|-++.-.-|+-+++-+..+|-.|+.++
T Consensus 386 nd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry 434 (527)
T PF15066_consen 386 NDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERY 434 (527)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 3455666778889999999999999888888888888999998888766
No 230
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=79.82 E-value=2.6 Score=46.30 Aligned_cols=54 Identities=11% Similarity=0.220 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHH
Q 005378 346 ETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVER 400 (699)
Q Consensus 346 ~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~ 400 (699)
..|...+......+..+...+..+..+...|+.+++...-. +..|+.++++++.
T Consensus 101 s~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~-ItdLe~RV~~LEs 154 (326)
T PF04582_consen 101 SSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALN-ITDLESRVKALES 154 (326)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHT
T ss_pred HhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcch-HhhHHHHHHHHhc
Confidence 34444444444444444444445555555555555544444 4555555555543
No 231
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=79.33 E-value=91 Score=36.61 Aligned_cols=52 Identities=23% Similarity=0.178 Sum_probs=26.6
Q ss_pred HhhhhcCCCCchhhh---hHHHHHHHHHhhhhccchHHHHHHHHHh-hhhhHHHHH
Q 005378 237 QQALKADDPPTKEQD---QLDEAQGLLKTTISTGQSKEARLARVCA-GLSSRLQEY 288 (699)
Q Consensus 237 ~~~~k~~~k~~~lqk---QLeE~n~~LrsE~etl~~ke~qLa~~~a-RLrK~~~EL 288 (699)
.++.-.-+|...+++ ||+---++||+|+-+-..|+.++--.|+ +||..++..
T Consensus 159 ~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~ 214 (596)
T KOG4360|consen 159 ELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQA 214 (596)
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444433 4444556666776666667777764443 344444433
No 232
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=79.11 E-value=1.6e+02 Score=35.95 Aligned_cols=45 Identities=11% Similarity=0.209 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHH
Q 005378 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR 392 (699)
Q Consensus 347 eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE 392 (699)
.-..+..+|.+++...+.+++.+.-++++|..+.+.+-.+ +..|+
T Consensus 213 aAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e-~~qL~ 257 (916)
T KOG0249|consen 213 AALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGE-LDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHH
Confidence 3344778888889999999999999988888887776555 33344
No 233
>PLN03188 kinesin-12 family protein; Provisional
Probab=78.80 E-value=2.1e+02 Score=37.10 Aligned_cols=19 Identities=5% Similarity=0.018 Sum_probs=13.4
Q ss_pred hhHHHhhhhcCCCCchhhh
Q 005378 233 NKRKQQALKADDPPTKEQD 251 (699)
Q Consensus 233 ~~~~~~~~k~~~k~~~lqk 251 (699)
.+.+.+--++--||+.|-.
T Consensus 1050 ~~er~~w~e~es~wislte 1068 (1320)
T PLN03188 1050 EQERLRWTEAESKWISLAE 1068 (1320)
T ss_pred HHHHHHHHHHhhhheechH
Confidence 3555666678888988873
No 234
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=78.26 E-value=1e+02 Score=33.21 Aligned_cols=21 Identities=19% Similarity=0.056 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005378 412 TKMAAMEREVELEHRAAEASM 432 (699)
Q Consensus 412 Tk~ea~~Re~~LEeenaelse 432 (699)
.+.+...+.-+||.+|..|..
T Consensus 106 ikeql~kyiReLEQaNDdLEr 126 (333)
T KOG1853|consen 106 IKEQLRKYIRELEQANDDLER 126 (333)
T ss_pred HHHHHHHHHHHHHHhccHHHH
Confidence 344444455556666644443
No 235
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=77.93 E-value=90 Score=32.24 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 005378 314 KQLEQELSVYKSEVTKVESNLAEALAAKNSEI 345 (699)
Q Consensus 314 ~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi 345 (699)
..++..+...+......+.....+|.+++..+
T Consensus 55 k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdL 86 (219)
T TIGR02977 55 KELERRVSRLEAQVADWQEKAELALSKGREDL 86 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 33344444444444444443444444444333
No 236
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=77.84 E-value=1e+02 Score=35.67 Aligned_cols=54 Identities=9% Similarity=0.143 Sum_probs=39.1
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005378 350 SSIDALKK-QAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEE 404 (699)
Q Consensus 350 ~RL~~Leq-eL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~ 404 (699)
..+.++.+ +++..++.++.+..+.+.+....++.++. ..+++..+..++..++.
T Consensus 339 ~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~-kk~~e~k~~q~q~k~~k 393 (493)
T KOG0804|consen 339 QIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAE-KKIVERKLQQLQTKLKK 393 (493)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHH-HHHHHHHHHHHHHHHHH
Confidence 34455555 78888888888888888888888887777 66777666666655543
No 237
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=77.80 E-value=98 Score=32.65 Aligned_cols=141 Identities=10% Similarity=0.130 Sum_probs=77.0
Q ss_pred hHHHHHHHHHhhhhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH------------HHHH
Q 005378 252 QLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQ------------LEQE 319 (699)
Q Consensus 252 QLeE~n~~LrsE~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~q------------LQ~E 319 (699)
.++.....|-.+++.|..|......-+..+.............|+..+..+......+-.++.. |+..
T Consensus 49 ~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~ 128 (264)
T PF06008_consen 49 PLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRA 128 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHH
Confidence 4444466677777777777777777777777777777777777777666665555544443333 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHH
Q 005378 320 LSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVE 399 (699)
Q Consensus 320 L~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ 399 (699)
|...+.=+..+ +.+ ............+..++.-+.+++..+...+.+++.+...+... +..-..+|..|+
T Consensus 129 l~ea~~mL~em----r~r--~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~----L~~~~~kL~Dl~ 198 (264)
T PF06008_consen 129 LAEAQRMLEEM----RKR--DFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDD----LNDYNAKLQDLR 198 (264)
T ss_pred HHHHHHHHHHH----Hhc--cchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHH----HHHHHHHHHHHH
Confidence 33333333222 222 12233334444555666666666666666666666665554332 222334455554
Q ss_pred HHH
Q 005378 400 RRA 402 (699)
Q Consensus 400 ~aL 402 (699)
..+
T Consensus 199 ~~l 201 (264)
T PF06008_consen 199 DLL 201 (264)
T ss_pred HHH
Confidence 444
No 238
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=77.79 E-value=1.4e+02 Score=34.37 Aligned_cols=33 Identities=33% Similarity=0.391 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHH
Q 005378 490 AIQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVE 525 (699)
Q Consensus 490 ei~~leeEl~r~r~~~~~le~~l~~lE~elqkLr~e 525 (699)
.|+.|+.|++|+|.....++. +..+++++++.+
T Consensus 254 hi~~l~~EveRlrt~l~~Aqk---~~~ek~~qy~~E 286 (552)
T KOG2129|consen 254 HIDKLQAEVERLRTYLSRAQK---SYQEKLMQYRAE 286 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 456778899988876554442 334444444444
No 239
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=77.50 E-value=1.2e+02 Score=33.46 Aligned_cols=17 Identities=18% Similarity=0.485 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005378 312 RIKQLEQELSVYKSEVT 328 (699)
Q Consensus 312 kl~qLQ~EL~~eQ~er~ 328 (699)
.+..|+.+|...+-.+.
T Consensus 16 ~V~~m~~~L~~~~~~L~ 32 (344)
T PF12777_consen 16 QVEEMQEELEEKQPELE 32 (344)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444433333
No 240
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=77.29 E-value=1.3e+02 Score=34.44 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 005378 285 LQEYKSENAQLEEL 298 (699)
Q Consensus 285 ~~ELkke~aqLEe~ 298 (699)
+.+++.....|+..
T Consensus 221 l~eik~~~~~L~~~ 234 (395)
T PF10267_consen 221 LREIKESQSRLEES 234 (395)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 241
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=77.17 E-value=64 Score=31.19 Aligned_cols=84 Identities=11% Similarity=0.268 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHH
Q 005378 307 RSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (699)
Q Consensus 307 ~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke 386 (699)
+.|.+-+..+-+.|..+-+.+...+..+..+ |+.|-.+|+...+-.+..+..+.+++.+..++..++...+.-
T Consensus 39 r~m~~A~~~v~kql~~vs~~l~~tKkhLsqR-------Id~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~ 111 (126)
T PF07889_consen 39 RSMSDAVASVSKQLEQVSESLSSTKKHLSQR-------IDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQM 111 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4455555555555555555555555533333 334444444444444444455555555555555444333333
Q ss_pred HHHHHHHHHHHH
Q 005378 387 MIQALREELASV 398 (699)
Q Consensus 387 ~lqSLE~eLksl 398 (699)
...|+..|..+
T Consensus 112 -V~~Le~ki~~i 122 (126)
T PF07889_consen 112 -VEGLEGKIDEI 122 (126)
T ss_pred -HHHHHHHHHHH
Confidence 44444444443
No 242
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=76.90 E-value=1.1e+02 Score=32.54 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH
Q 005378 446 AKAGELEQKVAMLEVECATLQQELQD 471 (699)
Q Consensus 446 ~ra~eLeqQ~smLe~dl~qLkQeLqd 471 (699)
.++..|+.++.....++...+.+|..
T Consensus 103 ~Ea~~lq~el~~ar~~~~~ak~~L~~ 128 (246)
T PF00769_consen 103 EEAEELQEELEEAREDEEEAKEELLE 128 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666533
No 243
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=76.90 E-value=1.5e+02 Score=34.43 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=12.1
Q ss_pred CCccccCCCCCCCCCccccccc
Q 005378 161 DSDVHLNHPPSPLPPKEMGIVN 182 (699)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~ 182 (699)
++..+..+|+++|--+.+-.-+
T Consensus 195 esaLn~~QpqSFl~~en~~~~v 216 (527)
T PF15066_consen 195 ESALNPSQPQSFLYKENVCRDV 216 (527)
T ss_pred hhccCCCCCcchhhhccccccc
Confidence 3455566666666655444333
No 244
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=76.83 E-value=1.5e+02 Score=34.26 Aligned_cols=105 Identities=23% Similarity=0.235 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHH--hHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh--hc
Q 005378 461 ECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQ--GQRDAENKLSSLEAEVQKMRVEMAAMKRDAE--HY 536 (699)
Q Consensus 461 dl~qLkQeLqd~e~~~~r~qqk~~~~~~qei~~leeEl~r~r~--~~~~le~~l~~lE~elqkLr~e~~~lq~qle--q~ 536 (699)
++++++-.|..++.+++...--...++.|--=++..|++-.-+ -...++.+|....+.+.+|++.-..+=-.+. |-
T Consensus 310 elE~lR~~L~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkKKrssv~gtl~vahg 389 (575)
T KOG4403|consen 310 ELEQLRVALEKAEKELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSVFGTLHVAHG 389 (575)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcchheeeeeccc
Confidence 5666666666666666554433344555544455555553222 2335677777778888888877433221111 10
Q ss_pred ch---h--hhhHHHHHHHHHHHHHHHHH---HHHHHH
Q 005378 537 SR---E--EHMELEKRYRELTDLLYYKQ---TQLETM 565 (699)
Q Consensus 537 ~~---~--~~~ele~rl~eLte~L~eKQ---~qlE~L 565 (699)
++ + ..-+.+.++-++|..|-+.+ .|||.+
T Consensus 390 sslDdVD~kIleak~al~evtt~lrErl~RWqQIE~l 426 (575)
T KOG4403|consen 390 SSLDDVDHKILEAKSALSEVTTLLRERLHRWQQIESL 426 (575)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 1 13455666777777776666 455544
No 245
>PRK09343 prefoldin subunit beta; Provisional
Probab=76.26 E-value=68 Score=30.36 Aligned_cols=39 Identities=21% Similarity=0.214 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 005378 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRN 379 (699)
Q Consensus 341 k~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~ 379 (699)
.+..++-+..+|..++.....++..+.+++..++.+...
T Consensus 76 l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 76 LKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445555666666666666666666666666555443
No 246
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=76.00 E-value=1.4e+02 Score=33.47 Aligned_cols=102 Identities=23% Similarity=0.211 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 344 EIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVEL 423 (699)
Q Consensus 344 Ei~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~L 423 (699)
-+....++.+.|+..+.+.+++=..++..++.++....+++.+ -++|-.+|+.+-+ +..
T Consensus 121 vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeee-sq~LnrELaE~la------------------yqq-- 179 (401)
T PF06785_consen 121 VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEE-SQTLNRELAEALA------------------YQQ-- 179 (401)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHH-HHHHHHHHHHHHH------------------HHH--
Confidence 3345566666666656655555555555555555555555444 3333333332211 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 005378 424 EHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQ 467 (699)
Q Consensus 424 EeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQ 467 (699)
+-+.+|...+..--..|+.+..-+..|+.++.-|-++.+.+-|
T Consensus 180 -~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLLQ 222 (401)
T PF06785_consen 180 -ELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLLQ 222 (401)
T ss_pred -HHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122334444344444555555556677777766677766644
No 247
>PF15294 Leu_zip: Leucine zipper
Probab=75.98 E-value=1.1e+02 Score=33.23 Aligned_cols=128 Identities=20% Similarity=0.251 Sum_probs=66.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 005378 281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAA 360 (699)
Q Consensus 281 LrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~ 360 (699)
|.+-+..|+.+|..|=.-+..++..+...-.+...|+.+|..+|......+. ...+.....++.+|+..+..+..++.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~--k~~~~~~~q~l~dLE~k~a~lK~e~e 207 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKG--KKDLSFKAQDLSDLENKMAALKSELE 207 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--cccccccccchhhHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555777777777777763332221 12233455666677766666654433
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 005378 361 LSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEE---ERAAHNATKM 414 (699)
Q Consensus 361 r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~---E~~aHk~Tk~ 414 (699)
.. +.........|.+.+... +..+-.++..|..++..++. +-..|++++.
T Consensus 208 k~---~~d~~~~~k~L~e~L~~~-KhelL~~QeqL~~aekeLekKfqqT~ay~NMk~ 260 (278)
T PF15294_consen 208 KA---LQDKESQQKALEETLQSC-KHELLRVQEQLSLAEKELEKKFQQTAAYRNMKE 260 (278)
T ss_pred HH---HHHHHHHHHHHHHHHHHH-HHHHHhcchhhhcchhhHHHHhCccHHHHHhHH
Confidence 22 333344445555555333 22244444556655555554 4455666654
No 248
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=75.89 E-value=2.1e+02 Score=35.39 Aligned_cols=31 Identities=26% Similarity=0.231 Sum_probs=20.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 005378 333 NLAEALAAKNSEIETLVSSIDALKKQAALSE 363 (699)
Q Consensus 333 ~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k 363 (699)
++.=++--+++|++.|..||--|++++...+
T Consensus 384 EIALA~QplrsENaqLrRrLrilnqqlreqe 414 (861)
T PF15254_consen 384 EIALAMQPLRSENAQLRRRLRILNQQLREQE 414 (861)
T ss_pred hhHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3444455677777778777777777776533
No 249
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=74.76 E-value=1e+02 Score=31.40 Aligned_cols=58 Identities=9% Similarity=0.050 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCC
Q 005378 426 RAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKS 483 (699)
Q Consensus 426 enaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~qqk~ 483 (699)
-..-|...|-.++..+.+-+.-+....-....++..+..+..++.+++.++.......
T Consensus 24 P~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g 81 (221)
T PF04012_consen 24 PEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAG 81 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344555666666666666666666655566667777777777777777777665443
No 250
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=74.54 E-value=1.6e+02 Score=33.49 Aligned_cols=49 Identities=12% Similarity=0.158 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 359 AALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAA 408 (699)
Q Consensus 359 L~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~a 408 (699)
+..++.+...+......+.......+-+ +..++..+..+...+..|...
T Consensus 287 i~~Lr~~~~~~~~~~~~l~~~~~~~~p~-~~~~~~q~~~~~~~~~~e~~~ 335 (458)
T COG3206 287 IQDLRQQYAQVRQQIADLSTELGAKHPQ-LVALEAQLAELRQQIAAELRQ 335 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccChH-HHhHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555455 555555566666555555444
No 251
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.37 E-value=1.3e+02 Score=32.50 Aligned_cols=23 Identities=17% Similarity=0.033 Sum_probs=8.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHH
Q 005378 451 LEQKVAMLEVECATLQQELQDME 473 (699)
Q Consensus 451 LeqQ~smLe~dl~qLkQeLqd~e 473 (699)
|+.|...++.-..++.++...+.
T Consensus 188 L~~qk~e~~~l~~~~aa~~a~~~ 210 (265)
T COG3883 188 LNSQKAEKNALIAALAAKEASAL 210 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Confidence 33333333333333333333333
No 252
>PF14992 TMCO5: TMCO5 family
Probab=73.77 E-value=1.4e+02 Score=32.54 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 421 VELEHRAAEASMALARIQRIADERT 445 (699)
Q Consensus 421 ~~LEeenaelseALa~lQrkL~EEk 445 (699)
..||..|..++..+.++|+++.+.-
T Consensus 73 ~~LE~~ne~l~~~~~elq~k~~e~~ 97 (280)
T PF14992_consen 73 AKLEKENEHLSKSVQELQRKQDEQE 97 (280)
T ss_pred HHHhhhhHhhhhhhhhhhhhhcccc
Confidence 4567777777888888888877655
No 253
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=73.62 E-value=91 Score=30.24 Aligned_cols=28 Identities=18% Similarity=0.291 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 341 KNSEIETLVSSIDALKKQAALSEGNLAS 368 (699)
Q Consensus 341 k~sEi~eLe~RL~~LeqeL~r~k~rLee 368 (699)
.+.++.+|-.=+.-++..+...+.+|..
T Consensus 82 ~q~EldDLL~ll~Dle~K~~kyk~rLk~ 109 (136)
T PF04871_consen 82 AQSELDDLLVLLGDLEEKRKKYKERLKE 109 (136)
T ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4455555555555555555555555544
No 254
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=73.40 E-value=1.7e+02 Score=33.30 Aligned_cols=16 Identities=19% Similarity=0.424 Sum_probs=6.3
Q ss_pred hhHHHHHHHHHHHHHH
Q 005378 282 SSRLQEYKSENAQLEE 297 (699)
Q Consensus 282 rK~~~ELkke~aqLEe 297 (699)
+.+...+....+.|+.
T Consensus 103 ~~~~~~~~~~~~rL~a 118 (457)
T TIGR01000 103 EQQLDNLKDQKKSLDT 118 (457)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444444433
No 255
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=73.33 E-value=1.3e+02 Score=34.78 Aligned_cols=48 Identities=15% Similarity=0.165 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 284 RLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVE 331 (699)
Q Consensus 284 ~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~e 331 (699)
...++..+...++..+..++.....++.++.+++.-+.+.+.++..++
T Consensus 355 ~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~ 402 (493)
T KOG0804|consen 355 YYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER 402 (493)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444445555555555555555555555555555555444443
No 256
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=73.12 E-value=18 Score=35.68 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 347 TLVSSIDALKKQAALSEGNLASLQM 371 (699)
Q Consensus 347 eLe~RL~~LeqeL~r~k~rLeelq~ 371 (699)
+|...+..+..++..+..+|..+..
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555566666666555554
No 257
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=73.04 E-value=1.7e+02 Score=33.70 Aligned_cols=42 Identities=19% Similarity=0.146 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 005378 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (699)
Q Consensus 341 k~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~ 382 (699)
+.+++..+...-.++...+...+..|..+++|+..|.++...
T Consensus 32 ~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 32 LSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444445555555555556666555555443
No 258
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=72.21 E-value=40 Score=33.17 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=9.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHH
Q 005378 335 AEALAAKNSEIETLVSSIDALK 356 (699)
Q Consensus 335 ~eaLaak~sEi~eLe~RL~~Le 356 (699)
...+.....++..|+.+|..+.
T Consensus 115 ~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 115 REEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 259
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=71.70 E-value=1.4e+02 Score=31.61 Aligned_cols=54 Identities=17% Similarity=0.215 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHH
Q 005378 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERR 401 (699)
Q Consensus 347 eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~a 401 (699)
.|...+..++.+...+.....++..++.+|.......+.+ ...|+.++..++..
T Consensus 37 ~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eE-k~~Le~e~~e~~~~ 90 (246)
T PF00769_consen 37 ELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEE-KEQLEQELREAEAE 90 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555544443 34444444444433
No 260
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=71.57 E-value=46 Score=28.83 Aligned_cols=42 Identities=24% Similarity=0.255 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 005378 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (699)
Q Consensus 341 k~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~ 382 (699)
+.+++..|+++++.+...+......+..+..++.+....+..
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~ 44 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGD 44 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666665555555555555555555444444
No 261
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=71.39 E-value=65 Score=31.14 Aligned_cols=15 Identities=7% Similarity=0.330 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 005378 308 SYEARIKQLEQELSV 322 (699)
Q Consensus 308 ~Lq~kl~qLQ~EL~~ 322 (699)
..++++..++..+++
T Consensus 86 ~i~~eV~~v~~dv~~ 100 (126)
T PF07889_consen 86 QIKDEVTEVREDVSQ 100 (126)
T ss_pred HHHHHHHHHHhhHHH
Confidence 333333333333333
No 262
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=70.98 E-value=1.1e+02 Score=35.22 Aligned_cols=52 Identities=27% Similarity=0.282 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 312 RIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLA 367 (699)
Q Consensus 312 kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLe 367 (699)
-+..||.+|..++.++..+... +.-.+-++..|+.+|.++++++...+.++.
T Consensus 287 lI~~Le~qLa~~~aeL~~L~~~----~~p~sPqV~~l~~rI~aLe~QIa~er~kl~ 338 (434)
T PRK15178 287 LIAGFETQLAEAKAEYAQLMVN----GLDQNPLIPRLSAKIKVLEKQIGEQRNRLS 338 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh----cCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Confidence 5778888888888887776542 233567788888888888888888887774
No 263
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=70.88 E-value=64 Score=27.51 Aligned_cols=58 Identities=21% Similarity=0.241 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 005378 398 VERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQ 466 (699)
Q Consensus 398 lQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLk 466 (699)
||++|+-|..++..... .+......+ -.++++|++.-.+-.+|..++..|+..++.++
T Consensus 2 lQsaL~~EirakQ~~~e----EL~kvk~~n-------~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 2 LQSALEAEIRAKQAIQE----ELTKVKSAN-------LAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH----HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56666666666555544 222222222 34556666666666666666666665555443
No 264
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=70.80 E-value=2.2e+02 Score=33.43 Aligned_cols=80 Identities=19% Similarity=0.332 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMERE 420 (699)
Q Consensus 341 k~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re 420 (699)
..+|+..|+.-+.++..-++.-..+|.++...+.+=....+..|..|+...+..+.+|+.+.+.|+.. +..++...-
T Consensus 138 e~~q~~~LekAl~~~~~i~~~E~~~l~~L~~AL~kE~~~Rt~dE~~mv~~yr~ki~aL~~aIe~Er~~---m~EEAiqe~ 214 (508)
T PF00901_consen 138 EENQIEILEKALKSYGKIVKEENKQLDRLARALQKESRERTQDERKMVEEYRQKIDALKNAIEVEREG---MQEEAIQEI 214 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHH
Confidence 45678889999999999999999999999888888888888889999999999999999999887765 455554444
Q ss_pred HHH
Q 005378 421 VEL 423 (699)
Q Consensus 421 ~~L 423 (699)
..+
T Consensus 215 ~dm 217 (508)
T PF00901_consen 215 ADM 217 (508)
T ss_pred hcc
Confidence 433
No 265
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=70.75 E-value=2.6e+02 Score=34.25 Aligned_cols=68 Identities=19% Similarity=0.255 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 519 VQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ 587 (699)
Q Consensus 519 lqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~~~~ 587 (699)
...+..+....+..++.+. -...++...++.|...+..-+++++.+....+.+...|+....+....+
T Consensus 540 ~~~l~~el~~~~~~le~~k-k~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rle 607 (698)
T KOG0978|consen 540 ESKLIKELTTLTQSLEMLK-KKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLE 607 (698)
T ss_pred hhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444331 2367888888888888888888888888888888888877765544443
No 266
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=70.73 E-value=1.3e+02 Score=30.72 Aligned_cols=75 Identities=25% Similarity=0.271 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHH
Q 005378 312 RIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIE-TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (699)
Q Consensus 312 kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~-eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke 386 (699)
....++..+..........+.....+|.+++..++ ..-.+...++..+...+..+.........|...+..++..
T Consensus 52 ~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~k 127 (221)
T PF04012_consen 52 NQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAK 127 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666665556665556666666665554 3334555566666666666666666655555555555554
No 267
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=70.43 E-value=2.2e+02 Score=33.31 Aligned_cols=26 Identities=12% Similarity=0.240 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 562 LETMASEKAAAEFQLEKEMNRLQEVQ 587 (699)
Q Consensus 562 lE~L~~Er~sL~~qLE~~~~~a~~~~ 587 (699)
+..+..+-..+-..|+.+...|+.+.
T Consensus 382 l~~f~~~~~klG~~L~~a~~~y~~A~ 407 (475)
T PRK10361 382 MRLFVDDMSAIGQSLDKAQDNYRQAM 407 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555543
No 268
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=70.05 E-value=44 Score=30.33 Aligned_cols=71 Identities=18% Similarity=0.308 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 005378 307 RSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMR 378 (699)
Q Consensus 307 ~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e 378 (699)
-.|-.+...++.++..++.++......+......+ ...+.|..+...+..++..++..+..++.++..+.-
T Consensus 32 ~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~-~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~ 102 (108)
T PF02403_consen 32 IELDQERRELQQELEELRAERNELSKEIGKLKKAG-EDAEELKAEVKELKEEIKELEEQLKELEEELNELLL 102 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT-CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677788888888888888777665442222 467777777777777777777777777777666543
No 269
>PRK12704 phosphodiesterase; Provisional
Probab=70.03 E-value=2.3e+02 Score=33.36 Aligned_cols=9 Identities=11% Similarity=0.324 Sum_probs=3.8
Q ss_pred HhHHhhcch
Q 005378 643 ATRFLWRYP 651 (699)
Q Consensus 643 ~g~fLRRyP 651 (699)
++.+|++|+
T Consensus 386 Ga~il~~~~ 394 (520)
T PRK12704 386 GAELAKKYK 394 (520)
T ss_pred HHHHHHHcC
Confidence 333444444
No 270
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=69.96 E-value=1.9e+02 Score=32.32 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Q 005378 446 AKAGELEQKVAMLEVECATLQQELQDMEARLKRG 479 (699)
Q Consensus 446 ~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~ 479 (699)
.+..+++.-++-...-+...+++++.|-.+....
T Consensus 229 aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kkl 262 (391)
T KOG1850|consen 229 AKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKL 262 (391)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666655555555666666666665444443
No 271
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=69.94 E-value=1.9e+02 Score=32.47 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=25.0
Q ss_pred HHHHHHHHhhhhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 005378 254 DEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEEL 298 (699)
Q Consensus 254 eE~n~~LrsE~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~ 298 (699)
|+....|..|.+.+..=..-|........+++..++.....||.-
T Consensus 115 D~ve~eL~kE~~li~~~~~lL~~~l~~~~eQl~~lr~ar~~Le~D 159 (384)
T PF03148_consen 115 DEVEKELLKEVELIENIKRLLQRTLEQAEEQLRLLRAARYRLEKD 159 (384)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555444444455556666666666666666666663
No 272
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=69.86 E-value=1.5e+02 Score=31.02 Aligned_cols=11 Identities=36% Similarity=0.371 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 005378 319 ELSVYKSEVTK 329 (699)
Q Consensus 319 EL~~eQ~er~q 329 (699)
.+...+.+...
T Consensus 28 ~l~~~~~~~~~ 38 (302)
T PF10186_consen 28 ELQQLKEENEE 38 (302)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 273
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=69.68 E-value=43 Score=35.46 Aligned_cols=10 Identities=30% Similarity=0.348 Sum_probs=4.3
Q ss_pred cccccccccc
Q 005378 139 EIPETFTDLD 148 (699)
Q Consensus 139 ~~~~~~~~~~ 148 (699)
+++.+++|+.
T Consensus 11 IiVEGAsDvE 20 (290)
T COG4026 11 IIVEGASDVE 20 (290)
T ss_pred EEeeccchHH
Confidence 3444444444
No 274
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=69.09 E-value=3.2e+02 Score=34.64 Aligned_cols=22 Identities=5% Similarity=-0.138 Sum_probs=10.9
Q ss_pred HhhhhhHHHHHHHHHHHHHHHH
Q 005378 278 CAGLSSRLQEYKSENAQLEELL 299 (699)
Q Consensus 278 ~aRLrK~~~ELkke~aqLEe~l 299 (699)
..++++...+++.....++..+
T Consensus 182 ~~~~~~~~~~~~~~~~~l~~~~ 203 (1042)
T TIGR00618 182 ALMEFAKKKSLHGKAELLTLRS 203 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555555555544
No 275
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=69.07 E-value=2.2e+02 Score=32.80 Aligned_cols=116 Identities=10% Similarity=0.103 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 343 SEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL-----TETRMIQALREELASVERRAEEERAAHNATKMAAM 417 (699)
Q Consensus 343 sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~-----~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~ 417 (699)
+.+.-+...-..|......+-.++..+|.-.+.|..++.. ..++ +.++..+|..+...|..-.......+-
T Consensus 199 ~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~q-le~v~kdi~~a~~~L~~m~~~i~~~kp--- 274 (424)
T PF03915_consen 199 SNRAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQ-LETVAKDISRASKELKKMKEYIKTEKP--- 274 (424)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCH---
Confidence 4444455555556666666666666776666666666655 2344 555555555555555432222222222
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 005378 418 EREVE-LEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQ 467 (699)
Q Consensus 418 ~Re~~-LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQ 467 (699)
-..+ ||.| -+.++.-|..|..+-..+.+|...+..+...+..+.+
T Consensus 275 -~WkKiWE~E----L~~V~eEQqfL~~QedL~~DL~eDl~k~~etf~lveq 320 (424)
T PF03915_consen 275 -IWKKIWESE----LQKVCEEQQFLKLQEDLLSDLKEDLKKASETFALVEQ 320 (424)
T ss_dssp -HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 2222 2345566666666666677777766666666655444
No 276
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.72 E-value=3.3e+02 Score=34.58 Aligned_cols=14 Identities=7% Similarity=-0.304 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 005378 659 FYLVFVHLFLMYLL 672 (699)
Q Consensus 659 ~Y~vlLHlWVm~vL 672 (699)
-|--..|-|+---.
T Consensus 656 ~~~~~~~~~L~~~~ 669 (1042)
T TIGR00618 656 TQERVREHALSIRV 669 (1042)
T ss_pred cchhhHHHHHHHHH
Confidence 33344444544333
No 277
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=68.52 E-value=2e+02 Score=32.16 Aligned_cols=33 Identities=12% Similarity=0.279 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 555 LYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ 587 (699)
Q Consensus 555 L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~~~~ 587 (699)
+-.++.++..|..+....+..++.+..++.+..
T Consensus 337 l~~~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~ 369 (444)
T TIGR03017 337 LNRQRDEMSVLQRDVENAQRAYDAAMQRYTQTR 369 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456777888888888888888888877664
No 278
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=68.32 E-value=82 Score=27.55 Aligned_cols=63 Identities=19% Similarity=0.255 Sum_probs=39.4
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 508 AENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE 585 (699)
Q Consensus 508 le~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~~ 585 (699)
++.++..+=+.|.-|+.++..++ .+...|.++-..-....+.|..|++++.-+|.-+..++++
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLk---------------e~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~ 71 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELK---------------EKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLEE 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 44444444444555555544433 3444444555555667777889999999999998888764
No 279
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=68.22 E-value=1.7e+02 Score=31.03 Aligned_cols=24 Identities=8% Similarity=-0.035 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHhHhhhhhHHH
Q 005378 363 EGNLASLQMNMESIMRNRELTETR 386 (699)
Q Consensus 363 k~rLeelq~E~~~L~e~~s~~Eke 386 (699)
...-....++++.|..+++.++.-
T Consensus 45 ~~Er~~h~eeLrqI~~DIn~lE~i 68 (230)
T PF10146_consen 45 LQERMAHVEELRQINQDINTLENI 68 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444555555444444
No 280
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=68.13 E-value=1.4e+02 Score=30.54 Aligned_cols=60 Identities=28% Similarity=0.372 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASL 369 (699)
Q Consensus 306 ~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeel 369 (699)
.+.++..+..|+..+..+|........ ...+.+++|..|++....+++++...+.+-+..
T Consensus 126 ~~~~e~~i~~Le~ki~el~~~~~~~~~----~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 126 LKELESEIKELEMKILELQRQAAKLKE----KKEAKDKEISRLKSEAEALKEEIENAELEFQSV 185 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555544433322 223355677777777777777777666555443
No 281
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=66.95 E-value=1.9e+02 Score=31.24 Aligned_cols=33 Identities=27% Similarity=0.451 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 005378 492 QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKR 531 (699)
Q Consensus 492 ~~leeEl~r~r~~~~~le~~l~~lE~elqkLr~e~~~lq~ 531 (699)
..+..++..-|.... .++.+|..|+.++..|+.
T Consensus 189 ~~m~kei~~~re~i~-------el~e~I~~L~~eV~~L~~ 221 (258)
T PF15397_consen 189 QVMQKEIVQFREEID-------ELEEEIPQLRAEVEQLQA 221 (258)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 445566666655555 455555555555555553
No 282
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=66.58 E-value=52 Score=38.12 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005378 287 EYKSENAQLEELLVAERELSRSYEARI 313 (699)
Q Consensus 287 ELkke~aqLEe~l~elqek~~~Lq~kl 313 (699)
+++.+..+++..+..+++....++.++
T Consensus 75 ~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 75 ELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344443333333333333333
No 283
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=66.17 E-value=1.9e+02 Score=31.07 Aligned_cols=114 Identities=18% Similarity=0.198 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHhhhhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 005378 249 EQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVT 328 (699)
Q Consensus 249 lqkQLeE~n~~LrsE~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~ 328 (699)
|+.+-.-.+..|.+... |..++.+++...++......+........+..-..++++...++.++.+|...+..++..+.
T Consensus 182 l~~~~~~~~~ilq~d~~-L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~~~~~ 260 (297)
T PF02841_consen 182 LQSKESMENSILQADQQ-LTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLKEKMEEEREQLL 260 (297)
T ss_dssp HHHCHHHHHHHHHH-TT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHH
Q 005378 329 KVESNLAEALAAKNSEI--ETLVSSIDALKKQAALSE 363 (699)
Q Consensus 329 q~es~~~eaLaak~sEi--~eLe~RL~~LeqeL~r~k 363 (699)
...+.+.+.--.-..++ +.....+..++.++..++
T Consensus 261 ~e~e~~l~~k~~eq~~~l~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 261 QEQERLLEQKLQEQEELLKEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 284
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=66.11 E-value=54 Score=33.42 Aligned_cols=67 Identities=25% Similarity=0.297 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 005378 283 SRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALS 362 (699)
Q Consensus 283 K~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~ 362 (699)
+-++-|...+..|++.++.++..|+.+++++..|+..|.- .+|+..++.|..++...
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~-----------------------eemQe~i~~L~kev~~~ 135 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTT-----------------------EEMQEEIQELKKEVAGY 135 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-----------------------HHHHHHHHHHHHHHHHH
Confidence 4455566667777777777777777777666666666532 25666777777777777
Q ss_pred HHHHHHHHHH
Q 005378 363 EGNLASLQMN 372 (699)
Q Consensus 363 k~rLeelq~E 372 (699)
+++|..+.+-
T Consensus 136 ~erl~~~k~g 145 (201)
T KOG4603|consen 136 RERLKNIKAG 145 (201)
T ss_pred HHHHHHHHHh
Confidence 7777665544
No 285
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=65.68 E-value=54 Score=30.38 Aligned_cols=63 Identities=17% Similarity=0.251 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005378 341 KNSEIETLVSSIDALKKQAALSEGNLASL--QMNMESIMRNRELTETRMIQALREELASVERRAEE 404 (699)
Q Consensus 341 k~sEi~eLe~RL~~LeqeL~r~k~rLeel--q~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~ 404 (699)
..+.+..+..++...+..+..++..+..+ ..+...|.-.++....+ +..+...|+.+.+.++.
T Consensus 33 ~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~-~~~l~~~l~~v~~~~~l 97 (106)
T PF10805_consen 33 KREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGE-LKELSARLQGVSHQLDL 97 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHH
Confidence 44555556555555555555555555555 55556666666555555 55555556555555444
No 286
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=65.16 E-value=1.7e+02 Score=30.14 Aligned_cols=17 Identities=6% Similarity=-0.050 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005378 360 ALSEGNLASLQMNMESI 376 (699)
Q Consensus 360 ~r~k~rLeelq~E~~~L 376 (699)
...+..+..+.....++
T Consensus 41 ~~ar~~lA~~~a~~k~~ 57 (219)
T TIGR02977 41 VEVRTTSARTIADKKEL 57 (219)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 287
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=64.95 E-value=3.3e+02 Score=33.21 Aligned_cols=30 Identities=20% Similarity=0.216 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 557 YKQTQLETMASEKAAAEFQLEKEMNRLQEV 586 (699)
Q Consensus 557 eKQ~qlE~L~~Er~sL~~qLE~~~~~a~~~ 586 (699)
.++.++..|..+....+.-.+.+..|..+.
T Consensus 367 ~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~ 396 (726)
T PRK09841 367 STQQEVLRLSRDVEAGRAVYLQLLNRQQEL 396 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666554
No 288
>PF15175 SPATA24: Spermatogenesis-associated protein 24
Probab=64.94 E-value=91 Score=31.04 Aligned_cols=66 Identities=27% Similarity=0.350 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 005378 394 ELASVERRAEEERAAHNATKMAAMEREV--------------ELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLE 459 (699)
Q Consensus 394 eLkslQ~aLe~E~~aHk~Tk~ea~~Re~--------------~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe 459 (699)
+-..+...|+.|+.+|.-|+.-+.-... .|+.+..+...|+..++.+...|..+.+.|.-+|+..+
T Consensus 4 E~~~~~~~l~~Ek~eHaKTK~lLake~EKLqfAlgeieiL~kQl~rek~afe~a~~~vk~k~~~Es~k~dqL~~KC~~~~ 83 (153)
T PF15175_consen 4 EFEAVEKKLEEEKAEHAKTKALLAKESEKLQFALGEIEILSKQLEREKLAFEKALGSVKSKVLQESSKKDQLITKCNEIE 83 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888888888764443322 23777788888999999999999999999988888765
No 289
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=64.72 E-value=2e+02 Score=30.75 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 348 LVSSIDALKKQAALSEGNLASLQMNME 374 (699)
Q Consensus 348 Le~RL~~LeqeL~r~k~rLeelq~E~~ 374 (699)
+...+..++..+...+..+..++.+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~a~~~~~ 121 (327)
T TIGR02971 95 LFKDVAAQQATLNRLEAELETAQREVD 121 (327)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444443333333
No 290
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=64.58 E-value=2.2e+02 Score=31.20 Aligned_cols=29 Identities=10% Similarity=-0.034 Sum_probs=17.1
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 005378 278 CAGLSSRLQEYKSENAQLEELLVAERELS 306 (699)
Q Consensus 278 ~aRLrK~~~ELkke~aqLEe~l~elqek~ 306 (699)
..-+++++.+++.+....|..+.+.+.+.
T Consensus 172 ~~fl~~ql~~~~~~l~~ae~~l~~fr~~~ 200 (362)
T TIGR01010 172 IAFAENEVKEAEQRLNATKAELLKYQIKN 200 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45566666666666666666655554433
No 291
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=64.37 E-value=1.4e+02 Score=28.74 Aligned_cols=37 Identities=27% Similarity=0.300 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005378 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIM 377 (699)
Q Consensus 341 k~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~ 377 (699)
.+...+.|+.|+..++..-++...++++++.......
T Consensus 75 L~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 75 LEERKETLELRIKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444556666777777777777777776666665543
No 292
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=64.25 E-value=2e+02 Score=34.95 Aligned_cols=35 Identities=31% Similarity=0.215 Sum_probs=19.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005378 271 EARLARVCAGLSSRLQEYKSENAQLEELLVAEREL 305 (699)
Q Consensus 271 e~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqek 305 (699)
...-.....=|.+++.+++.+....|..+...+.+
T Consensus 262 ~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~ 296 (726)
T PRK09841 262 AAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQ 296 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455556666666666666666655555443
No 293
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=63.86 E-value=2.2e+02 Score=30.89 Aligned_cols=73 Identities=22% Similarity=0.254 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhc
Q 005378 408 AHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (699)
Q Consensus 408 aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~q 480 (699)
..+..+..++.|-.++.+-...+-.++..++..++.=+..+..+......|+...+.-+++|+..+.++...+
T Consensus 145 ~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 145 ELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred hHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666676666655555566666666655555554544444444444444444555544444444443
No 294
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=62.95 E-value=12 Score=34.71 Aligned_cols=80 Identities=24% Similarity=0.236 Sum_probs=53.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 005378 300 VAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRN 379 (699)
Q Consensus 300 ~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~ 379 (699)
.+.+..+..++..+.+++.+|+.+-..++..-..+.. ...-+...++.++..|..++......+..++.++..|+.-
T Consensus 4 ~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa---~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v 80 (100)
T PF06428_consen 4 EEERERREEAEQEKEQIESELEELTASLFEEANKMVA---DARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTV 80 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667778888888888888888888887665552 2444556666666666666666666666666665555544
Q ss_pred hhh
Q 005378 380 REL 382 (699)
Q Consensus 380 ~s~ 382 (699)
+..
T Consensus 81 ~~~ 83 (100)
T PF06428_consen 81 MES 83 (100)
T ss_dssp TTT
T ss_pred HHH
Confidence 433
No 295
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=62.89 E-value=1.3e+02 Score=27.82 Aligned_cols=41 Identities=24% Similarity=0.298 Sum_probs=21.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 336 EALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESI 376 (699)
Q Consensus 336 eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L 376 (699)
+.....+..+..++.++..++......+..+.+++..++.+
T Consensus 67 e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 67 EAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555555555555555555443
No 296
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=62.51 E-value=2e+02 Score=29.95 Aligned_cols=60 Identities=17% Similarity=0.341 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 313 IKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESI 376 (699)
Q Consensus 313 l~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L 376 (699)
+.+|+..|......+..... +|...++.+..+..+..++...+.....++.++...+..+
T Consensus 80 ~~eLeq~l~~~~~~L~~~q~----~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~ 139 (240)
T PF12795_consen 80 LEELEQRLSQEQAQLQELQE----QLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNL 139 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45555555555444444332 3334455555666666666666666666666666555543
No 297
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=62.36 E-value=4.1e+02 Score=33.47 Aligned_cols=291 Identities=14% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhh
Q 005378 271 EARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVY--------KSEVTKVESNLAEALAAKN 342 (699)
Q Consensus 271 e~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~e--------Q~er~q~es~~~eaLaak~ 342 (699)
.+++..+.+.++-.-. ..++.+.-.+.+.....++.....-. +....+....++.++...+
T Consensus 502 ~~~~vfl~a~i~sssr-----------~v~~~k~~~~~i~~~~a~l~~~de~~~l~~dl~~~~r~rq~~~~~r~~ld~le 570 (984)
T COG4717 502 VAQIVFLSAEIKSSSR-----------AVREEKAAVTDIPEELARLLITDELPELAVDLLVQSRIRQHWQQLRKALDQLE 570 (984)
T ss_pred HHHHHHHhhhcccchH-----------HHHHHhcccCCCChHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 343 SEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR--EELASVERRAEEERAAHNATKMAAMERE 420 (699)
Q Consensus 343 sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE--~eLkslQ~aLe~E~~aHk~Tk~ea~~Re 420 (699)
+..+.|++|+..++...........++-.+.=---+--.+..-.+++.+. .++.....-|..+...-..-+..|..|.
T Consensus 571 aa~e~lE~r~~~~e~~~~e~~se~e~~l~~l~l~~el~~~~~~d~ls~mkd~~~~~q~~~EL~~q~~~L~ee~~af~~~v 650 (984)
T COG4717 571 AAYEALEGRFAAAEAAMAEWQSEWEEALDELGLSRELSPEQQLDILSTMKDLKKLMQKKAELTHQVARLREEQAAFEERV 650 (984)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHH
Q 005378 421 VEL----EHRAAEASMALARIQRIADERT---AKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQA 493 (699)
Q Consensus 421 ~~L----EeenaelseALa~lQrkL~EEk---~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~qqk~~~~~~qei~~ 493 (699)
..+ |.....++-.....++...-+. ..-..++.-..-.+.-...|+++++.-..++...-......... .
T Consensus 651 ~~l~~~~e~~~~~ls~~~~~~r~~~~~e~~~Ee~r~~le~~~~~t~El~~~L~ae~~~~~kei~dLfd~~~~~~ed---~ 727 (984)
T COG4717 651 EGLLAVLEAQFIDLSTLFCVQRLRVAAELQKEEARLALEGNIERTKELNDELRAELELHRKEILDLFDCGTADTED---A 727 (984)
T ss_pred HHhhhhhhcccchhHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcHH---H
Q ss_pred HHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 494 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAE 573 (699)
Q Consensus 494 leeEl~r~r~~~~~le~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~ 573 (699)
+-+-....++... .+.++.+++.++...-.+--+|-.++.+ ...-+..++.|-+.+..-..+++.+.+.+.++.
T Consensus 728 F~e~A~~~qq~~q-~~srl~~~~aql~~v~~~~~eL~~~~~~-----~~~~e~E~~~lEe~~d~~~ee~~el~a~v~~~~ 801 (984)
T COG4717 728 FREAAREEQQLTQ-RESRLESLEAQLEGVAAEAYELSASLDQ-----RELKEEELALLEEAIDALDEEVEELHAQVAALS 801 (984)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHhcCCchhHHhhhhhhh-----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH
Q 005378 574 FQLEKEMN 581 (699)
Q Consensus 574 ~qLE~~~~ 581 (699)
.+++.+++
T Consensus 802 ~qi~~lE~ 809 (984)
T COG4717 802 RQIAQLEG 809 (984)
T ss_pred HHHHHHhc
No 298
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=62.31 E-value=3.2e+02 Score=32.19 Aligned_cols=62 Identities=13% Similarity=0.236 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 360 ALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHR 426 (699)
Q Consensus 360 ~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEee 426 (699)
......++.+..+.+.....++....+ +..++.+|..+++ -...|..+-.+...+..+++.+
T Consensus 276 ~~~~~~l~d~~~~l~~~~~~l~~dp~~-L~ele~RL~~l~~----LkrKyg~s~e~l~~~~~~l~~e 337 (563)
T TIGR00634 276 GNALTEVEEATRELQNYLDELEFDPER-LNEIEERLAQIKR----LKRKYGASVEEVLEYAEKIKEE 337 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHHHH----HHHHhCCCHHHHHHHHHHHHHH
Confidence 333333333333344433333323333 4444444433322 2334444444444444444333
No 299
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=62.19 E-value=2.4e+02 Score=30.98 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=15.4
Q ss_pred ccchHHHHHHHHHhhhhhHHHHHHH
Q 005378 266 TGQSKEARLARVCAGLSSRLQEYKS 290 (699)
Q Consensus 266 tl~~ke~qLa~~~aRLrK~~~ELkk 290 (699)
-|+.||.-+--+.+||++....|.-
T Consensus 62 PLQQKEV~iRHLkakLkes~~~l~d 86 (305)
T PF15290_consen 62 PLQQKEVCIRHLKAKLKESENRLHD 86 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566666666667776666555443
No 300
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=61.86 E-value=96 Score=33.58 Aligned_cols=40 Identities=25% Similarity=0.243 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHH
Q 005378 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (699)
Q Consensus 347 eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke 386 (699)
.|..+|..-..++++.+.||..++.=+=-.|++.+.+|.+
T Consensus 194 ~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~E 233 (267)
T PF10234_consen 194 NLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEE 233 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 5555555556666666666666665555555555444444
No 301
>PRK11519 tyrosine kinase; Provisional
Probab=61.55 E-value=3.7e+02 Score=32.70 Aligned_cols=22 Identities=9% Similarity=0.004 Sum_probs=15.7
Q ss_pred hhhhhhhhccccccccc-ccccc
Q 005378 91 TLAVEKETITTGKTQKN-GEQQQ 112 (699)
Q Consensus 91 ~~~~~~~~~~~~~~~~~-~~~~~ 112 (699)
.+.+|.|.|.|..+... .+++-
T Consensus 86 ~~~tEieILkSr~v~~~VV~~L~ 108 (719)
T PRK11519 86 ASDAEIQLIRSRLVLGKTVDDLD 108 (719)
T ss_pred chHHHHHHHHHHHHHHHHHHHhC
Confidence 57778899999888764 44443
No 302
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=60.46 E-value=2.7e+02 Score=30.78 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=13.5
Q ss_pred CCCCcccccccCCCcccccccccc
Q 005378 172 PLPPKEMGIVNEDRIDDAGQITKS 195 (699)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~ 195 (699)
++++++.+++..+-|--+|-++..
T Consensus 72 Sldare~e~~~~~~p~~~~s~l~n 95 (302)
T PF07139_consen 72 SLDARESEPATPECPPQTGSSLTN 95 (302)
T ss_pred ccCccCCcccccCCCCCCcccccc
Confidence 466666666666665555444433
No 303
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=60.08 E-value=2.3e+02 Score=29.86 Aligned_cols=75 Identities=24% Similarity=0.304 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHH
Q 005378 312 RIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIET-LVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (699)
Q Consensus 312 kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~e-Le~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke 386 (699)
....++..+...+......+.....+|.+++..++. +-.++..++..+...+..+..+......+...+..++..
T Consensus 53 ~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~K 128 (225)
T COG1842 53 RQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQK 128 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666654432 224555555555555555555555555555555555554
No 304
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=59.80 E-value=57 Score=33.13 Aligned_cols=65 Identities=20% Similarity=0.286 Sum_probs=33.0
Q ss_pred hhhhHHHHHHHHHhhhhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005378 249 EQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEV 327 (699)
Q Consensus 249 lqkQLeE~n~~LrsE~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er 327 (699)
.|..|......|..+++. +...|+..+.++..+.+.+|. .+.+...|.++...|+.+|+.-+..+
T Consensus 103 VqqeL~~tf~rL~~~Vd~----------~~~eL~~eI~~L~~~i~~le~----~~~~~k~LrnKa~~L~~eL~~F~~~y 167 (171)
T PF04799_consen 103 VQQELSSTFARLCQQVDQ----------TKNELEDEIKQLEKEIQRLEE----IQSKSKTLRNKANWLESELERFQEQY 167 (171)
T ss_dssp -------HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555555555443 344444444444444444443 24566688888888888887765543
No 305
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=59.46 E-value=2.4e+02 Score=33.34 Aligned_cols=76 Identities=26% Similarity=0.373 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 005378 270 KEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLV 349 (699)
Q Consensus 270 ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe 349 (699)
|-......|.-|.+++....+++..+++.+ ..+..++..||.+|...+..+...=+.+.++|..++..+..-.
T Consensus 435 Ka~~f~~Ec~aL~~rL~~aE~ek~~l~eeL-------~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~ 507 (518)
T PF10212_consen 435 KAVHFYAECRALQKRLESAEKEKESLEEEL-------KEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQR 507 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555444444432 2333345555555555444444433334444333333333333
Q ss_pred HHH
Q 005378 350 SSI 352 (699)
Q Consensus 350 ~RL 352 (699)
..|
T Consensus 508 eeI 510 (518)
T PF10212_consen 508 EEI 510 (518)
T ss_pred HHH
Confidence 333
No 306
>PRK11519 tyrosine kinase; Provisional
Probab=59.14 E-value=4e+02 Score=32.38 Aligned_cols=31 Identities=29% Similarity=0.174 Sum_probs=17.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005378 275 ARVCAGLSSRLQEYKSENAQLEELLVAEREL 305 (699)
Q Consensus 275 a~~~aRLrK~~~ELkke~aqLEe~l~elqek 305 (699)
.....=|++++.+++.+....|..+.+.+..
T Consensus 266 ~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~ 296 (719)
T PRK11519 266 SKSLAFLAQQLPEVRSRLDVAENKLNAFRQD 296 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666666666655544443
No 307
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=59.00 E-value=3.6e+02 Score=31.75 Aligned_cols=26 Identities=12% Similarity=0.248 Sum_probs=10.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 305 LSRSYEARIKQLEQELSVYKSEVTKV 330 (699)
Q Consensus 305 k~~~Lq~kl~qLQ~EL~~eQ~er~q~ 330 (699)
.+..++.+...++.+++.++..+...
T Consensus 176 ~L~~l~~~~~~~~~eld~L~~ql~EL 201 (563)
T TIGR00634 176 QLKDRQQKEQELAQRLDFLQFQLEEL 201 (563)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444443
No 308
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=58.44 E-value=1.4e+02 Score=26.84 Aligned_cols=71 Identities=11% Similarity=0.186 Sum_probs=38.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 507 DAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE 585 (699)
Q Consensus 507 ~le~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~~ 585 (699)
.+|.|+...=+.|.-|+-++.+++.. ...+...+..+...-..-....+.|..|.+++.-+|--+..+.++
T Consensus 8 qLE~KIqqAvdtI~LLqmEieELKek--------n~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~~ 78 (79)
T PRK15422 8 KLEAKVQQAIDTITLLQMEIEELKEK--------NNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRMEE 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34445554555555566555555532 222233333333333333345666778888888888887776643
No 309
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=58.07 E-value=3.2e+02 Score=30.90 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 005378 492 QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAM 529 (699)
Q Consensus 492 ~~leeEl~r~r~~~~~le~~l~~lE~elqkLr~e~~~l 529 (699)
..|.-|.+.+|..+...+.+-+-+.++..-|++.++.+
T Consensus 248 ~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdl 285 (561)
T KOG1103|consen 248 EEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDL 285 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444444444443333333334444455555444433
No 310
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=57.34 E-value=1.6e+02 Score=31.47 Aligned_cols=34 Identities=24% Similarity=0.400 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005378 286 QEYKSENAQLEELLVAERELSRSYEARIKQLEQE 319 (699)
Q Consensus 286 ~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~E 319 (699)
++++++...++..+.+.++....|++.+..++..
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~ 35 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQAS 35 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3455566666666666666666666666666644
No 311
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=57.17 E-value=2.1e+02 Score=28.41 Aligned_cols=76 Identities=22% Similarity=0.294 Sum_probs=58.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 334 LAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHN 410 (699)
Q Consensus 334 ~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk 410 (699)
+.+.+..++.++..|......--+.+...+..+..+..+...+...+...... +..++.+|..++.....-...+.
T Consensus 54 l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~-~~~~r~~l~~~k~~r~k~~~~~~ 129 (177)
T PF13870_consen 54 LNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEE-LAKLREELYRVKKERDKLRKQNK 129 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667788888998888888889999999999999999999988888777 77777777777655544444333
No 312
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=57.04 E-value=5.2e+02 Score=33.02 Aligned_cols=49 Identities=22% Similarity=0.245 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 284 RLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES 332 (699)
Q Consensus 284 ~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es 332 (699)
.+..++.+..-+-..+++++++...+...+...+..+..+..++....+
T Consensus 637 ~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~ 685 (1072)
T KOG0979|consen 637 EIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNS 685 (1072)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333334444444444455555555555555555555555555555544
No 313
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=56.87 E-value=2.4e+02 Score=28.98 Aligned_cols=45 Identities=11% Similarity=0.130 Sum_probs=29.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhH
Q 005378 340 AKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTE 384 (699)
Q Consensus 340 ak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~E 384 (699)
....++...+.|-.-|+.+|.-++..+..++.++..+.+.-..++
T Consensus 61 dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l~ 105 (178)
T PF14073_consen 61 DLSSQLSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQ 105 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 445555666666667777777777777777777766666554443
No 314
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=56.82 E-value=1.2e+02 Score=26.35 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 294 QLEELLVAERELSRSYEARIKQLEQELSVYKSEVTK 329 (699)
Q Consensus 294 qLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q 329 (699)
+||..+..+=..|..|+.+-..|-.++...+.++.+
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~ 39 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQ 39 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444
No 315
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=56.66 E-value=2.5e+02 Score=29.17 Aligned_cols=79 Identities=11% Similarity=0.067 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 286 QEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGN 365 (699)
Q Consensus 286 ~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~r 365 (699)
..|+-.|..|-+.+.+|++.||.|......-.. |+++=.-+-. |+. ..|...+..-.++|..++.+
T Consensus 58 R~LKe~NqkLqedNqELRdLCCFLDddRqKgrk-larEWQrFGr----yta---------~vmr~eV~~Y~~KL~eLE~k 123 (195)
T PF10226_consen 58 RGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRK-LAREWQRFGR----YTA---------SVMRQEVAQYQQKLKELEDK 123 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccchhHHHhHH-HhHHHHHhhh----HHH---------HHHHHHHHHHHHHHHHHHHH
Confidence 346666777778888889999888773322222 2222111111 221 25555666666666666666
Q ss_pred HHHHHHHHHHHhH
Q 005378 366 LASLQMNMESIMR 378 (699)
Q Consensus 366 Leelq~E~~~L~e 378 (699)
.+++..++.-|++
T Consensus 124 q~~L~rEN~eLKE 136 (195)
T PF10226_consen 124 QEELIRENLELKE 136 (195)
T ss_pred HHHHHHhHHHHHH
Confidence 6666666655544
No 316
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=56.47 E-value=1.6e+02 Score=26.81 Aligned_cols=15 Identities=27% Similarity=0.222 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 005378 308 SYEARIKQLEQELSV 322 (699)
Q Consensus 308 ~Lq~kl~qLQ~EL~~ 322 (699)
.++.++..|..+...
T Consensus 28 ~lE~k~~rl~~Ek~k 42 (96)
T PF08647_consen 28 ILEQKKLRLEAEKAK 42 (96)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444333
No 317
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=56.28 E-value=1.6e+02 Score=26.72 Aligned_cols=40 Identities=18% Similarity=0.186 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 005378 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (699)
Q Consensus 341 k~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~ 380 (699)
+..+++.|.....+|.++|.....+..+++.-+.-+..++
T Consensus 37 ~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL 76 (89)
T PF13747_consen 37 LEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRL 76 (89)
T ss_pred HHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555555444444
No 318
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=56.16 E-value=1e+02 Score=26.69 Aligned_cols=34 Identities=12% Similarity=0.236 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 005378 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (699)
Q Consensus 347 eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~ 380 (699)
.|-.+.+.+..+-..++..+..++.|+.+|.++.
T Consensus 11 ~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekn 44 (65)
T TIGR02449 11 HLLEYLERLKSENRLLRAQEKTWREERAQLLEKN 44 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444
No 319
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=55.11 E-value=3.9e+02 Score=30.94 Aligned_cols=139 Identities=17% Similarity=0.252 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH----HHHHHHHHHHhh
Q 005378 387 MIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEAS-----MALARIQRIADERT----AKAGELEQKVAM 457 (699)
Q Consensus 387 ~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaels-----eALa~lQrkL~EEk----~ra~eLeqQ~sm 457 (699)
.+++|+.+|..+.+.+..-....+.+-..+......+.......+ .=|..+..+|.++. .++++|+.-+..
T Consensus 156 el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~ 235 (426)
T smart00806 156 ELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDIIEA 235 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377777777777776665555555554444434333332211111 12456666777666 567777766666
Q ss_pred hHHHH------------HHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHhHHHH---HHhhhhHHHHHHHH
Q 005378 458 LEVEC------------ATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQGQRDA---ENKLSSLEAEVQKM 522 (699)
Q Consensus 458 Le~dl------------~qLkQeLqd~e~~~~r~qqk~~~~~~qei~~leeEl~r~r~~~~~l---e~~l~~lE~elqkL 522 (699)
|.-|. +....+|..+...+..++......--.=-+-|+.|++..=+.++-+ +.=+..+.+++.+.
T Consensus 236 LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQedL~~DL~dDL~ka 315 (426)
T smart00806 236 LRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQEDLIADLKEDLEKA 315 (426)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54443 3444444444444443332100000000156777777654333211 12233444444444
Q ss_pred HHH
Q 005378 523 RVE 525 (699)
Q Consensus 523 r~e 525 (699)
..-
T Consensus 316 ~eT 318 (426)
T smart00806 316 EET 318 (426)
T ss_pred HHH
Confidence 443
No 320
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=55.02 E-value=4.6e+02 Score=31.75 Aligned_cols=59 Identities=20% Similarity=0.275 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAA 408 (699)
Q Consensus 347 eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~a 408 (699)
.+..++..++.++.........++.-...|.... ..=+++..++.|+-+.++|-.+.+-
T Consensus 382 ~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~~r---~dW~laEae~Ll~lA~q~L~l~~dv 440 (656)
T PRK06975 382 QLDSQFAQLDGKLADAQSAQQALEQQYQDLSRNR---DDWMIAEVEQMLSSASQQLQLTGNV 440 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh---hhhHHHHHHHHHHHHHHHHHHhCCH
Confidence 3344444444444444444444444444443222 2233666777888888887665443
No 321
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=55.00 E-value=2.7e+02 Score=34.41 Aligned_cols=46 Identities=17% Similarity=0.160 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHH
Q 005378 354 ALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVE 399 (699)
Q Consensus 354 ~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ 399 (699)
.++....+.+..+++++...+.+..+......+++...+.+++.+-
T Consensus 540 e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i 585 (771)
T TIGR01069 540 EQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESII 585 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444544444444444444444433333
No 322
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.89 E-value=5.1e+02 Score=32.23 Aligned_cols=63 Identities=16% Similarity=0.296 Sum_probs=34.9
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHH-HHHHhhhhcc---------hhhhhHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 005378 505 QRDAENKLSSLEAEVQKMRVEMA-AMKRDAEHYS---------REEHMELEKRYRELTD-LLYYKQTQLETMAS 567 (699)
Q Consensus 505 ~~~le~~l~~lE~elqkLr~e~~-~lq~qleq~~---------~~~~~ele~rl~eLte-~L~eKQ~qlE~L~~ 567 (699)
.+.++.+|..-+..+++|+.++- .|.+-.++.+ -..-.+|=.|+.+|++ .|-++-..-..|..
T Consensus 778 r~~LqkrIDa~na~Lrrl~~~Iig~m~~~k~~~~a~~~e~~ael~~ipey~~rL~~L~~D~Lpef~arF~~llN 851 (1104)
T COG4913 778 RRQLQKRIDAVNARLRRLREEIIGRMSDAKKEDTAALSEVGAELDDIPEYLARLQTLTEDALPEFLARFQELLN 851 (1104)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhhccCHhHHHHHHHHHHhhhhhhHHHHHHHHHHHhh
Confidence 34455666666777777777621 1211111111 0134678889999975 56677665555544
No 323
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=54.14 E-value=4.1e+02 Score=30.93 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 005378 432 MALARIQRIADERTAKAGELEQKVA 456 (699)
Q Consensus 432 eALa~lQrkL~EEk~ra~eLeqQ~s 456 (699)
.||...-.-+.|..-|..+.+.-|-
T Consensus 404 ~al~evtt~lrErl~RWqQIE~lcG 428 (575)
T KOG4403|consen 404 SALSEVTTLLRERLHRWQQIESLCG 428 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444555556666667777776544
No 324
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=54.09 E-value=1.2e+02 Score=26.60 Aligned_cols=55 Identities=15% Similarity=0.145 Sum_probs=26.8
Q ss_pred hHHHHHHHHHhhhhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005378 252 QLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARI 313 (699)
Q Consensus 252 QLeE~n~~LrsE~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl 313 (699)
--|+....|..|++.|+.+ ..++...+-.|+..+..+|..+..+..+...+...+
T Consensus 9 EKDe~Ia~L~eEGekLSk~-------el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~ 63 (74)
T PF12329_consen 9 EKDEQIAQLMEEGEKLSKK-------ELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKEL 63 (74)
T ss_pred hHHHHHHHHHHHHHHHHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777753333 333444444444444445544444333333333333
No 325
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=53.72 E-value=2.4e+02 Score=28.19 Aligned_cols=55 Identities=22% Similarity=0.183 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 005378 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSE 363 (699)
Q Consensus 309 Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k 363 (699)
|.....+|..+..+++..+.+.+..+..--..|..+..+|..++..++.+...+.
T Consensus 55 L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~ 109 (158)
T PF09744_consen 55 LREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLE 109 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555554443332223344444444444444444443333
No 326
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.55 E-value=1.6e+02 Score=26.02 Aligned_cols=48 Identities=8% Similarity=0.196 Sum_probs=22.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 005378 301 AERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI 352 (699)
Q Consensus 301 elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL 352 (699)
+++++...|..++..++...+.++.+-.+++. .-..|+..+..|-+++
T Consensus 29 ELKEknn~l~~e~q~~q~~reaL~~eneqlk~----e~~~WQerlrsLLGkm 76 (79)
T COG3074 29 ELKEKNNSLSQEVQNAQHQREALERENEQLKE----EQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhh
Confidence 44555555555555555554444444444333 2223444444444443
No 327
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=53.39 E-value=2.2e+02 Score=31.93 Aligned_cols=61 Identities=10% Similarity=0.064 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERA 407 (699)
Q Consensus 347 eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~ 407 (699)
.|....++|..+...+..+++++..++..+...+...=-..|+++...|+.++..|..-..
T Consensus 148 ~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~ 208 (342)
T PF06632_consen 148 HLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAKE 208 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhc
Confidence 4444455566667777888888888888888888887777788888999999988865443
No 328
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=52.77 E-value=3.2e+02 Score=30.78 Aligned_cols=23 Identities=9% Similarity=0.135 Sum_probs=8.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Q 005378 303 RELSRSYEARIKQLEQELSVYKS 325 (699)
Q Consensus 303 qek~~~Lq~kl~qLQ~EL~~eQ~ 325 (699)
......++.++...+..+...+.
T Consensus 104 ~~~~~~~~a~~~~~~A~i~~a~a 126 (352)
T COG1566 104 EAQLRNLRAQLASAQALIAQAEA 126 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 329
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=52.23 E-value=1.9e+02 Score=34.69 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 541 HMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ 587 (699)
Q Consensus 541 ~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~~~~ 587 (699)
..-..+|-..+..-.-.|...++=|..|-.+...|-+.-..+|+.++
T Consensus 476 t~g~~~Rs~~~~~p~~~~s~~~~f~~~~d~~s~~RreqkREQYrqVr 522 (832)
T KOG2077|consen 476 TPGVKKRSSTLSQPPGDKSKAFDFLSEEDASSASRREQKREQYRQVR 522 (832)
T ss_pred CccccccccccccCCccccccccccChhhhhhHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666666666655556666654
No 330
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=52.02 E-value=3.8e+02 Score=29.88 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=21.0
Q ss_pred HHHHHHHHhHhhhhh------HHHHHHHHHHHHHHHHHHHHH
Q 005378 369 LQMNMESIMRNRELT------ETRMIQALREELASVERRAEE 404 (699)
Q Consensus 369 lq~E~~~L~e~~s~~------Eke~lqSLE~eLkslQ~aLe~ 404 (699)
+|.|+++|.+.+... |.+.+.-++.+|+.|+..|..
T Consensus 120 lQgEmQ~LrDKLAiaERtAkaEaQLkeK~klRLK~LEe~Lk~ 161 (351)
T PF07058_consen 120 LQGEMQQLRDKLAIAERTAKAEAQLKEKLKLRLKVLEEGLKG 161 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 566666666666553 444455555667777766643
No 331
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=51.28 E-value=3.8e+02 Score=29.73 Aligned_cols=39 Identities=10% Similarity=0.098 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 005378 344 EIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (699)
Q Consensus 344 Ei~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~ 382 (699)
++++++.+...+..-+......|.++-.+.+.+++..+.
T Consensus 288 ~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe 326 (384)
T KOG0972|consen 288 TLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEE 326 (384)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444555555555555544443
No 332
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=50.98 E-value=3.6e+02 Score=29.36 Aligned_cols=42 Identities=17% Similarity=0.153 Sum_probs=29.0
Q ss_pred hhhhHHHHHHHHHhh-hhccchHHHHHHHHHhhhhhHHHHHHH
Q 005378 249 EQDQLDEAQGLLKTT-ISTGQSKEARLARVCAGLSSRLQEYKS 290 (699)
Q Consensus 249 lqkQLeE~n~~LrsE-~etl~~ke~qLa~~~aRLrK~~~ELkk 290 (699)
+=+++++.+.+|.-. ++++..-+++|.-+..|.+--.+|+..
T Consensus 28 ~wk~me~~q~kL~l~~~e~l~~s~~ql~ll~~~~k~L~aE~~q 70 (268)
T PF11802_consen 28 LWKDMEECQNKLSLIGTETLTDSDAQLSLLMMRVKCLTAELEQ 70 (268)
T ss_pred HHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 345777788888554 577777788888777777765555544
No 333
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=50.91 E-value=3.4e+02 Score=29.00 Aligned_cols=20 Identities=15% Similarity=0.210 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005378 308 SYEARIKQLEQELSVYKSEV 327 (699)
Q Consensus 308 ~Lq~kl~qLQ~EL~~eQ~er 327 (699)
.++..+.+++..+...+..+
T Consensus 77 ~~~~~l~~a~a~l~~~~~~~ 96 (334)
T TIGR00998 77 NAELALAKAEANLAALVRQT 96 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555444444333
No 334
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=50.90 E-value=2e+02 Score=31.70 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=17.5
Q ss_pred HhHHHHHHhhhhHHHHHHHHHHHHH
Q 005378 503 QGQRDAENKLSSLEAEVQKMRVEMA 527 (699)
Q Consensus 503 ~~~~~le~~l~~lE~elqkLr~e~~ 527 (699)
..++++-..|+.+.+.++|...+|.
T Consensus 276 d~qrdanrqisd~KfKl~KaEQeit 300 (302)
T PF09738_consen 276 DLQRDANRQISDYKFKLQKAEQEIT 300 (302)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 3456666777788888888776664
No 335
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=50.78 E-value=3.1e+02 Score=28.54 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=11.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 304 ELSRSYEARIKQLEQELSVYKSEVTKV 330 (699)
Q Consensus 304 ek~~~Lq~kl~qLQ~EL~~eQ~er~q~ 330 (699)
.+...|+..+...-.++..++.++...
T Consensus 38 ~~~~~~~~~i~~aP~~~~~l~~~l~~l 64 (240)
T PF12795_consen 38 KRAAEYQKQIDQAPKEIRELQKELEAL 64 (240)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 334444444444444444444444333
No 336
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=50.68 E-value=3.7e+02 Score=29.34 Aligned_cols=65 Identities=15% Similarity=0.207 Sum_probs=38.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 507 DAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKE 579 (699)
Q Consensus 507 ~le~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~ 579 (699)
..+++|..++.++..-+..-.+++.+ ..+|..-+.+|++.+.--|..|=-|..+...-+-+++++
T Consensus 233 ~s~Gria~Le~eLAmQKs~seElkss--------q~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l 297 (330)
T KOG2991|consen 233 ASEGRIAELEIELAMQKSQSEELKSS--------QEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRL 297 (330)
T ss_pred hhcccHHHHHHHHHHHHhhHHHHHHh--------HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHH
Confidence 35688888888888777766666532 223334566666665555555544444444444444443
No 337
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=50.32 E-value=3.4e+02 Score=29.26 Aligned_cols=7 Identities=0% Similarity=-0.017 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 005378 319 ELSVYKS 325 (699)
Q Consensus 319 EL~~eQ~ 325 (699)
++...+.
T Consensus 122 ~l~~a~~ 128 (331)
T PRK03598 122 AYDYAQN 128 (331)
T ss_pred HHHHHHH
Confidence 3333333
No 338
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=49.64 E-value=2.9e+02 Score=29.03 Aligned_cols=16 Identities=13% Similarity=0.100 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 005378 566 ASEKAAAEFQLEKEMN 581 (699)
Q Consensus 566 ~~Er~sL~~qLE~~~~ 581 (699)
+.+.+..+-+||.+..
T Consensus 168 e~~L~~v~~eIe~~~~ 183 (262)
T PF14257_consen 168 ERELSRVRSEIEQLEG 183 (262)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444433
No 339
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.58 E-value=4.7e+02 Score=30.28 Aligned_cols=53 Identities=23% Similarity=0.226 Sum_probs=30.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 005378 280 GLSSRLQEYKSENAQLEELLVAERELSRSYEA----RIKQLEQELSVYKSEVTKVES 332 (699)
Q Consensus 280 RLrK~~~ELkke~aqLEe~l~elqek~~~Lq~----kl~qLQ~EL~~eQ~er~q~es 332 (699)
.|.+...++.+.++.+|.-++..++-+..... +..--+.-|..+|..+.+.++
T Consensus 303 qlqrdlE~~~~~r~ele~~~~qs~ed~t~q~~~ll~~~q~sE~ll~tlq~~iSqaq~ 359 (542)
T KOG0993|consen 303 QLQRDLEELIETRAELEHTEQQSQEDITVQRAQLLEERQHSEDLLVTLQAEISQAQS 359 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 45566788888888888877776665542222 333333344444444444444
No 340
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=49.43 E-value=5e+02 Score=30.57 Aligned_cols=8 Identities=13% Similarity=0.260 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 005378 658 LFYLVFVH 665 (699)
Q Consensus 658 l~Y~vlLH 665 (699)
++..|+-|
T Consensus 393 V~~aI~~H 400 (514)
T TIGR03319 393 VVNAIAAH 400 (514)
T ss_pred HHHHHHHh
Confidence 33334333
No 341
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=49.07 E-value=50 Score=36.97 Aligned_cols=43 Identities=26% Similarity=0.357 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHH
Q 005378 359 AALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRA 402 (699)
Q Consensus 359 L~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aL 402 (699)
+..++.+++.++.....+.......+++ +..+...|..++.+.
T Consensus 146 i~e~Eeris~lEd~~~~i~~~~~~~~k~-i~~l~~kl~DlEnrs 188 (370)
T PF02994_consen 146 IDELEERISELEDRIEEIEQAIKELEKR-IKKLEDKLDDLENRS 188 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHhhc
Confidence 3333344444444444444444444455 444445555555544
No 342
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=48.93 E-value=1.9e+02 Score=30.53 Aligned_cols=40 Identities=8% Similarity=0.121 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHH
Q 005378 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (699)
Q Consensus 347 eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke 386 (699)
.....+..++.+...++...+.++.|-.+|.++.+.+..+
T Consensus 169 ~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 169 KKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555555555444
No 343
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=48.77 E-value=4.4e+02 Score=29.68 Aligned_cols=28 Identities=29% Similarity=0.260 Sum_probs=11.3
Q ss_pred HHHhHHHHHHHHHHHHH-HHHHHHHHHHH
Q 005378 303 RELSRSYEARIKQLEQE-LSVYKSEVTKV 330 (699)
Q Consensus 303 qek~~~Lq~kl~qLQ~E-L~~eQ~er~q~ 330 (699)
+.....++..+.+.+.. |...+.++...
T Consensus 111 ~a~~~~~~A~i~~a~a~~l~~a~~~~~R~ 139 (352)
T COG1566 111 RAQLASAQALIAQAEAQDLDQAQNELERR 139 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444442 44444444443
No 344
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=48.69 E-value=3.5e+02 Score=33.49 Aligned_cols=6 Identities=33% Similarity=0.457 Sum_probs=3.3
Q ss_pred Hhhcch
Q 005378 646 FLWRYP 651 (699)
Q Consensus 646 fLRRyP 651 (699)
||+++|
T Consensus 743 ~L~~~~ 748 (771)
T TIGR01069 743 LLKNHP 748 (771)
T ss_pred HhcCCc
Confidence 555555
No 345
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=48.53 E-value=4.9e+02 Score=30.12 Aligned_cols=85 Identities=14% Similarity=0.126 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 290 SENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASL 369 (699)
Q Consensus 290 ke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeel 369 (699)
..++-++.-...+.+.+..|-.++..||.-.+.++....+..-... -.++..+...|+.+..+|..++..+...
T Consensus 199 ~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~------~~qle~v~kdi~~a~~~L~~m~~~i~~~ 272 (424)
T PF03915_consen 199 SNRAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPS------PKQLETVAKDISRASKELKKMKEYIKTE 272 (424)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5567777777777778888888888888888888877776543222 2345566667777777777777777766
Q ss_pred HHHHHHHhHhh
Q 005378 370 QMNMESIMRNR 380 (699)
Q Consensus 370 q~E~~~L~e~~ 380 (699)
.--.+.+|+.-
T Consensus 273 kp~WkKiWE~E 283 (424)
T PF03915_consen 273 KPIWKKIWESE 283 (424)
T ss_dssp HHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 66666666543
No 346
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=47.41 E-value=3.6e+02 Score=28.27 Aligned_cols=149 Identities=17% Similarity=0.218 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 359 AALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQ 438 (699)
Q Consensus 359 L~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQ 438 (699)
+..+..++..+......-...+.........++..+|..+...++.|+..-...-...+.|+.+ ....++
T Consensus 94 l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e----------~~~~l~ 163 (247)
T PF06705_consen 94 LDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKRLEE----------EENRLQ 163 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH
Confidence 3333334444433333333333333333366777788888888887776644444444444322 223333
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHHH
Q 005378 439 RIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQGQRDAENKLSSLEAE 518 (699)
Q Consensus 439 rkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~qqk~~~~~~qei~~leeEl~r~r~~~~~le~~l~~lE~e 518 (699)
.+++.++. .-+..+..++.+++++........+.-..-...+++.++..+....+... .+=+.-
T Consensus 164 ~~i~~Ek~----------~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~e~~~R~------~~Dd~I 227 (247)
T PF06705_consen 164 EKIEKEKN----------TRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALALESQERE------QSDDDI 227 (247)
T ss_pred HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH------hhhhHH
Confidence 44443332 12344555556665555433333322222233344445444443333222 222444
Q ss_pred HHHHHHHHHHHHHhh
Q 005378 519 VQKMRVEMAAMKRDA 533 (699)
Q Consensus 519 lqkLr~e~~~lq~ql 533 (699)
|+.|-.=++.||+.|
T Consensus 228 v~aln~yt~~lQ~~L 242 (247)
T PF06705_consen 228 VQALNHYTKALQDGL 242 (247)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566666667777655
No 347
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=47.19 E-value=2e+02 Score=25.18 Aligned_cols=29 Identities=10% Similarity=0.164 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhHHH
Q 005378 358 QAALSEGNLASLQMNMESIMRNRELTETR 386 (699)
Q Consensus 358 eL~r~k~rLeelq~E~~~L~e~~s~~Eke 386 (699)
.++.++.....++.....+...+...+..
T Consensus 34 ~IKKLr~~~~e~e~~~~~l~~~~~~~e~~ 62 (74)
T PF12329_consen 34 TIKKLRAKIKELEKQIKELKKKLEELEKE 62 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444
No 348
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=47.18 E-value=4.1e+02 Score=28.88 Aligned_cols=22 Identities=18% Similarity=0.447 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005378 308 SYEARIKQLEQELSVYKSEVTK 329 (699)
Q Consensus 308 ~Lq~kl~qLQ~EL~~eQ~er~q 329 (699)
.++..+.++++++...+..+..
T Consensus 83 ~~~~~l~~a~a~l~~a~a~l~~ 104 (346)
T PRK10476 83 PYELTVAQAQADLALADAQIMT 104 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555444444443
No 349
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=46.69 E-value=5.6e+02 Score=30.28 Aligned_cols=57 Identities=12% Similarity=0.282 Sum_probs=43.6
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 276 RVCAGLSSRLQEYKSENAQLEELLVAEREL---SRSYEARIKQLEQELSVYKSEVTKVES 332 (699)
Q Consensus 276 ~~~aRLrK~~~ELkke~aqLEe~l~elqek---~~~Lq~kl~qLQ~EL~~eQ~er~q~es 332 (699)
.....|-+.++.++.++..|++...++... ...|+.+...|+.++-..++....++.
T Consensus 264 ~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~ 323 (622)
T COG5185 264 KFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQ 323 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 345667788888888888888888876554 447777888888888888888777766
No 350
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=46.13 E-value=38 Score=31.41 Aligned_cols=79 Identities=20% Similarity=0.252 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHH
Q 005378 319 ELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI-DALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELAS 397 (699)
Q Consensus 319 EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL-~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLks 397 (699)
+|..++..+...+. .....+.++++|...| +.++..+...+..-..++..+..|...+.+.... +.+++..|+.
T Consensus 2 ~l~~e~~~r~~ae~----~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~-l~~lq~qL~~ 76 (100)
T PF06428_consen 2 ELEEERERREEAEQ----EKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEAL-LESLQAQLKE 76 (100)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHC-CCHCTSSSSH
T ss_pred cHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 34445555555544 2334788888999999 9999999888887778888888888888777666 6777766666
Q ss_pred HHHHH
Q 005378 398 VERRA 402 (699)
Q Consensus 398 lQ~aL 402 (699)
|+.-+
T Consensus 77 LK~v~ 81 (100)
T PF06428_consen 77 LKTVM 81 (100)
T ss_dssp HHHCT
T ss_pred HHHHH
Confidence 65544
No 351
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=46.02 E-value=4.8e+02 Score=29.30 Aligned_cols=238 Identities=18% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHH
Q 005378 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMI 388 (699)
Q Consensus 309 Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~l 388 (699)
+..++.+|+.|+.++..++...+......- .....-..+...+..+.+.|..+ .++++-.. ..........+...
T Consensus 92 ~~~kl~RL~~Ev~EL~eEl~~~~~~~~~~~-~e~~~~~~l~~~~~~L~~~L~~l--~l~~~lg~--~~~~~~~~~~~~~~ 166 (388)
T PF04912_consen 92 PEQKLQRLRREVEELKEELEKRKADSKESD-EEKISPEELAQQLEELSKQLDSL--KLEELLGE--ETAQDLSDPQKALS 166 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccc-cccCChhhHHHHHHHHHHHHHHh--hcccccch--hhhcccccchhhHH
Q ss_pred HHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHH
Q 005378 389 QALREELASVERRA--------------------EEERAAHNATKMAAMEREVELEHRAAE----------------ASM 432 (699)
Q Consensus 389 qSLE~eLkslQ~aL--------------------e~E~~aHk~Tk~ea~~Re~~LEeenae----------------lse 432 (699)
..+-..|...+... +......-.-=+.|-.|+..||..-+. +..
T Consensus 167 ~kl~~~l~~~k~~~~~~~~~~~~~~ityel~~~p~~~~~~~la~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~ 246 (388)
T PF04912_consen 167 KKLLSQLESFKSSSGAGSSPANSDHITYELYYPPEQAKSQQLARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLP 246 (388)
T ss_pred HHHHHhhhhcccccccCCCCCCCCceeeeeecCcccchhhHHHHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHH
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHH----------------HHHHHhhccCChhHHHH--HHHH
Q 005378 433 ALARIQRIADERT-AKAGELEQKVAMLEVECATLQQELQDM----------------EARLKRGQKKSPEEANQ--AIQA 493 (699)
Q Consensus 433 ALa~lQrkL~EEk-~ra~eLeqQ~smLe~dl~qLkQeLqd~----------------e~~~~r~qqk~~~~~~q--ei~~ 493 (699)
+|..+++++.-=- ..++.++..+..|-.++..+...-... -.++.......|....- .++.
T Consensus 247 ~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~~ 326 (388)
T PF04912_consen 247 ALNELERQLSLLDPAKLDSIERRLKSLLSELEELAEKRKEAKEDAEQESKIDELYEILPRWDPYAPSLPSLVERLKTLKS 326 (388)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh---hcchhhhhHHHHHHHHH
Q 005378 494 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAE---HYSREEHMELEKRYREL 551 (699)
Q Consensus 494 leeEl~r~r~~~~~le~~l~~lE~elqkLr~e~~~lq~qle---q~~~~~~~ele~rl~eL 551 (699)
+=.++...-..+..++.....+...+.+.+.-+..++..+. ......-..++.||..|
T Consensus 327 lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~i~~n~~~le~Ri~~L 387 (388)
T PF04912_consen 327 LHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFKENMETIEKNVKKLEERIAKL 387 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 352
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=45.94 E-value=3.7e+02 Score=28.38 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 348 LVSSIDALKKQAALSEGNLASLQM 371 (699)
Q Consensus 348 Le~RL~~LeqeL~r~k~rLeelq~ 371 (699)
|+...+.++.+..++.+..+++++
T Consensus 184 l~Kq~e~~~~EydrLlee~~~Lq~ 207 (216)
T KOG1962|consen 184 LKKQSEGLQDEYDRLLEEYSKLQE 207 (216)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH
Confidence 333344444444444444444433
No 353
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=45.53 E-value=2.4e+02 Score=25.71 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=14.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005378 278 CAGLSSRLQEYKSENAQLEELLVAEREL 305 (699)
Q Consensus 278 ~aRLrK~~~ELkke~aqLEe~l~elqek 305 (699)
-..|+..++.+.....+++..+.+....
T Consensus 8 ~q~l~~~~~~l~~~~~~l~~~~~E~~~v 35 (105)
T cd00632 8 LQQLQQQLQAYIVQRQKVEAQLNENKKA 35 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555566666655544333
No 354
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=45.36 E-value=2.6e+02 Score=33.30 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHhhcc
Q 005378 466 QQELQDMEARLKRGQK 481 (699)
Q Consensus 466 kQeLqd~e~~~~r~qq 481 (699)
++++..|+.+++.+.+
T Consensus 190 ~~~~~~yk~~v~~i~~ 205 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKK 205 (555)
T ss_pred chhHHHHHHHHHHHHh
Confidence 4455555555555544
No 355
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=44.80 E-value=1.8e+02 Score=33.76 Aligned_cols=15 Identities=7% Similarity=0.131 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 005378 360 ALSEGNLASLQMNME 374 (699)
Q Consensus 360 ~r~k~rLeelq~E~~ 374 (699)
.....++.++.....
T Consensus 134 ~~~~~~~~~~~~~~~ 148 (525)
T TIGR02231 134 DFNGSEIERLLTEDR 148 (525)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 356
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=44.60 E-value=3.3e+02 Score=27.02 Aligned_cols=10 Identities=30% Similarity=0.494 Sum_probs=3.5
Q ss_pred HHHHHHHHHH
Q 005378 311 ARIKQLEQEL 320 (699)
Q Consensus 311 ~kl~qLQ~EL 320 (699)
..+..|....
T Consensus 27 ~~i~~l~~~~ 36 (145)
T COG1730 27 AQIAALNAAI 36 (145)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 357
>PRK00106 hypothetical protein; Provisional
Probab=44.49 E-value=6.2e+02 Score=30.18 Aligned_cols=10 Identities=50% Similarity=0.567 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 005378 516 EAEVQKMRVE 525 (699)
Q Consensus 516 E~elqkLr~e 525 (699)
|+-+.+-+++
T Consensus 300 Ee~v~k~~~e 309 (535)
T PRK00106 300 EELVEKNRLE 309 (535)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 358
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=44.48 E-value=4.1e+02 Score=28.07 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 005378 343 SEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAE 403 (699)
Q Consensus 343 sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe 403 (699)
.++..|+..+..+++.+......+.++......|..++.+.... +..+.-.....+..-.
T Consensus 92 ~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~-~~~l~ar~~~akA~~~ 151 (225)
T COG1842 92 EEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAK-KEALKARKAAAKAQEK 151 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 34556666677777777777777777777777777777776666 5555554444444333
No 359
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.39 E-value=7.3e+02 Score=30.99 Aligned_cols=23 Identities=13% Similarity=0.395 Sum_probs=13.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHH
Q 005378 447 KAGELEQKVAMLEVECATLQQEL 469 (699)
Q Consensus 447 ra~eLeqQ~smLe~dl~qLkQeL 469 (699)
-..+|++++-.-+..+..++.+|
T Consensus 777 ~r~~LqkrIDa~na~Lrrl~~~I 799 (1104)
T COG4913 777 HRRQLQKRIDAVNARLRRLREEI 799 (1104)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHH
Confidence 34456666666666666666655
No 360
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=44.27 E-value=3.7e+02 Score=27.93 Aligned_cols=70 Identities=21% Similarity=0.236 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 005378 288 YKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEG 364 (699)
Q Consensus 288 Lkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~ 364 (699)
+...+.+||..+. .|+..+..+..++..+-..|...+......|..++..-.++.++.-.++.....++.
T Consensus 134 W~~~n~~Le~~~~-------~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ 203 (221)
T PF05700_consen 134 WLIHNEQLEAMLK-------RLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQ 203 (221)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666433 334444444444444444455544444444444444444444444444333333333
No 361
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=43.89 E-value=8.2e+02 Score=31.42 Aligned_cols=51 Identities=22% Similarity=0.277 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 313 IKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLA 367 (699)
Q Consensus 313 l~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLe 367 (699)
+..--.+|..++....++++ .++.+.+-+..|+.+++.+...+++.+++..
T Consensus 176 ll~~h~eL~~lr~~e~~Le~----~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~ 226 (1072)
T KOG0979|consen 176 LLQYHIELMDLREDEKSLED----KLTTKTEKLNRLEDEIDKLEKDVERVRERER 226 (1072)
T ss_pred hHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566666666666554 3445677778888888888888888887643
No 362
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=43.74 E-value=1.4e+02 Score=31.97 Aligned_cols=47 Identities=9% Similarity=0.176 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 005378 431 SMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLK 477 (699)
Q Consensus 431 seALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~ 477 (699)
..++..|+..|+.-..++..|+-++..+..++++++++-.++-.++.
T Consensus 53 ~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld 99 (263)
T PRK10803 53 SQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQID 99 (263)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666666666655544433333
No 363
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=43.73 E-value=1.1e+02 Score=26.19 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005378 349 VSSIDALKKQAALSEGNLAS 368 (699)
Q Consensus 349 e~RL~~LeqeL~r~k~rLee 368 (699)
+..|+.|+..+..+..++..
T Consensus 31 q~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 31 QRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 364
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=43.33 E-value=58 Score=34.23 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=17.4
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 005378 552 TDLLYYKQTQ-LETMASEKAAAEFQLEKE 579 (699)
Q Consensus 552 te~L~eKQ~q-lE~L~~Er~sL~~qLE~~ 579 (699)
.+.+...+.. -|.|.+|.-.|..+|-.-
T Consensus 154 ~e~~l~~~~~~QE~L~~em~~La~~LK~~ 182 (251)
T PF09753_consen 154 LEKILQHHRNLQEDLTEEMLSLARQLKEN 182 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444543 357888888888777653
No 365
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=43.13 E-value=70 Score=26.52 Aligned_cols=43 Identities=28% Similarity=0.297 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 393 EELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALA 435 (699)
Q Consensus 393 ~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseALa 435 (699)
.+|..++..+.-|+..+...+..+-.|+.+++.+|..|-.-|.
T Consensus 4 ~Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~ 46 (52)
T PF12808_consen 4 LRLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELE 46 (52)
T ss_pred HHHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4688889999889888887899999999999999966655443
No 366
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=42.96 E-value=5.2e+02 Score=28.92 Aligned_cols=51 Identities=27% Similarity=0.448 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 313 IKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLA 367 (699)
Q Consensus 313 l~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLe 367 (699)
+..||.+|...+..+.+.++-+. --+=++-.|+.|++++.+++..-+.+++
T Consensus 225 vs~Le~eL~~iqaqL~tvks~m~----~~nPqi~~LkarieSlrkql~qe~q~is 275 (372)
T COG3524 225 VSKLEDELIVIQAQLDTVKSVMN----PENPQIPGLKARIESLRKQLLQEKQAIS 275 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC----CCCCcchhHHHHHHHHHHHHHHHHHHhc
Confidence 56677777777777777766321 2356677899999998888877665543
No 367
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=42.94 E-value=5.1e+02 Score=28.75 Aligned_cols=77 Identities=17% Similarity=0.148 Sum_probs=42.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 005378 274 LARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSID 353 (699)
Q Consensus 274 La~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~ 353 (699)
..-..+.++..+.-|...++..|+++++ +.+.+=..+..-+.+|-..=..+- ++++. +|.++|.
T Consensus 15 F~aahaqm~sav~qL~~~r~~teelIr~---rVrq~V~hVqaqEreLLe~v~~rY--qR~y~-----------ema~~L~ 78 (324)
T PF12126_consen 15 FGAAHAQMRSAVSQLGRARADTEELIRA---RVRQVVAHVQAQERELLEAVEARY--QRDYE-----------EMAGQLG 78 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-----------HHHHHHh
Confidence 3336777788888888777777776554 333333333333333321111111 11222 6777777
Q ss_pred HHHHHHHHHHHHH
Q 005378 354 ALKKQAALSEGNL 366 (699)
Q Consensus 354 ~LeqeL~r~k~rL 366 (699)
.|+.-|++.+.--
T Consensus 79 ~LeavLqRir~G~ 91 (324)
T PF12126_consen 79 RLEAVLQRIRTGG 91 (324)
T ss_pred HHHHHHHHHHhHH
Confidence 7777777766543
No 368
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=42.76 E-value=2.6e+02 Score=25.24 Aligned_cols=10 Identities=10% Similarity=0.245 Sum_probs=4.3
Q ss_pred HHHHHHhhhh
Q 005378 256 AQGLLKTTIS 265 (699)
Q Consensus 256 ~n~~LrsE~e 265 (699)
+..+.++-+|
T Consensus 9 LE~KIqqAvd 18 (79)
T PRK15422 9 LEAKVQQAID 18 (79)
T ss_pred HHHHHHHHHH
Confidence 3334444444
No 369
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=42.56 E-value=6.5e+02 Score=31.48 Aligned_cols=35 Identities=26% Similarity=0.280 Sum_probs=26.2
Q ss_pred hhchHHHhhhhhhccccccchhHHhhhcCCCCCcc
Q 005378 48 IKSRIKAQRRHSADESLKINDTAREQANTQASPVD 82 (699)
Q Consensus 48 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 82 (699)
.|||-|+-+.+-++|--.|+-+++---|--.--|+
T Consensus 562 RkSklksHR~lRDdEG~liRHfAGaVCYeT~~FvE 596 (1259)
T KOG0163|consen 562 RKSKLKSHRELRDDEGFLIRHFAGAVCYETEQFVE 596 (1259)
T ss_pred chhhhhhhhhhccccceeeeecccceeechHHHHH
Confidence 46888999999999999998888765554443343
No 370
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=42.54 E-value=1.5e+02 Score=31.64 Aligned_cols=40 Identities=8% Similarity=0.153 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHH
Q 005378 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (699)
Q Consensus 347 eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke 386 (699)
+|..+|+.+++++.+++..+++++-++++++++.-+.=.+
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~d 97 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQ 97 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666666666666655444333
No 371
>PF07099 DUF1361: Protein of unknown function (DUF1361); InterPro: IPR009793 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although some members are annotated as being putative integral membrane proteins.
Probab=42.43 E-value=46 Score=33.22 Aligned_cols=49 Identities=22% Similarity=0.207 Sum_probs=38.0
Q ss_pred HHHHHHHhHHhhhhHhHhHHhh-------cchhHHHHHHHHHHHHHHHHHHHHHhh
Q 005378 627 VQLQKAAKLLDSGAVRATRFLW-------RYPIARIILLFYLVFVHLFLMYLLHRL 675 (699)
Q Consensus 627 rrvk~A~~~lDs~slr~g~fLR-------RyP~aRl~~l~Y~vlLHlWVm~vL~~~ 675 (699)
.-+--++..+-++++.+|||+| .+|..=+--++..+--|.|.|+++++.
T Consensus 107 ~~~~~~~~~Lss~GIYlGRflR~NSWDi~~~P~~l~~~i~~~l~~~~~~fv~~~~~ 162 (168)
T PF07099_consen 107 WLFIILISFLSSFGIYLGRFLRLNSWDILTNPQSLIRDILSSLSPHAWLFVLLFTF 162 (168)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccchhHHhCCHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3456677889999999999999 467776666777777778888877754
No 372
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=42.15 E-value=5.1e+02 Score=28.55 Aligned_cols=12 Identities=25% Similarity=0.141 Sum_probs=6.4
Q ss_pred hHHHHHHHHHhh
Q 005378 252 QLDEAQGLLKTT 263 (699)
Q Consensus 252 QLeE~n~~LrsE 263 (699)
|-|=..+-||+-
T Consensus 65 QKEV~iRHLkak 76 (305)
T PF15290_consen 65 QKEVCIRHLKAK 76 (305)
T ss_pred HHHHHHHHHHHH
Confidence 445555555554
No 373
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=41.92 E-value=3.2e+02 Score=30.58 Aligned_cols=45 Identities=13% Similarity=0.234 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHH
Q 005378 358 QAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRA 402 (699)
Q Consensus 358 eL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aL 402 (699)
.+.+.+.++..+...++++....+..+...++.++++|+..+..+
T Consensus 40 sI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~l 84 (330)
T PF07851_consen 40 SISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQL 84 (330)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhH
Confidence 355555666666666666655555555555677777766666555
No 374
>PF04304 DUF454: Protein of unknown function (DUF454); InterPro: IPR007401 This is a predicted membrane protein.
Probab=41.81 E-value=58 Score=27.50 Aligned_cols=47 Identities=19% Similarity=0.235 Sum_probs=36.0
Q ss_pred hhhhHHHHHHHhHHhhhhHhHh-HHhhcchhHHHHHHHHHHHHHHHHH
Q 005378 623 AGASVQLQKAAKLLDSGAVRAT-RFLWRYPIARIILLFYLVFVHLFLM 669 (699)
Q Consensus 623 ~~~~rrvk~A~~~lDs~slr~g-~fLRRyP~aRl~~l~Y~vlLHlWVm 669 (699)
++++++.|-.+-..=.+++-+. .|+..+|.+|+++++.+++...|++
T Consensus 22 r~i~~k~K~~a~~~m~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~i~ 69 (71)
T PF04304_consen 22 RGIPRKAKIRALLMMWLSMGISAFFFVPNLWVRIVLAAILLIVAIYIL 69 (71)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHhe
Confidence 3566777777777777777777 6777777999999999998877765
No 375
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=41.76 E-value=5.9e+02 Score=29.20 Aligned_cols=44 Identities=20% Similarity=0.413 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 516 EAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMA 566 (699)
Q Consensus 516 E~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~ 566 (699)
..|+..|+.++..+...+. | .+..|.+++-|-+.-=|+.|..|+
T Consensus 275 q~Ei~~LKqeLa~~EEK~~-Y------qs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 275 QNEIYNLKQELASMEEKMA-Y------QSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHhHHHHHH-H------HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4556666666555444332 2 123477777777776666666555
No 376
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=41.70 E-value=2.2e+02 Score=24.11 Aligned_cols=16 Identities=31% Similarity=0.412 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 005378 351 SIDALKKQAALSEGNL 366 (699)
Q Consensus 351 RL~~LeqeL~r~k~rL 366 (699)
.+..+..+..|...||
T Consensus 32 ~v~~ak~EAaRAN~Rl 47 (56)
T PF04728_consen 32 DVQAAKEEAARANQRL 47 (56)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444443
No 377
>KOG3457 consensus Sec61 protein translocation complex, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=41.46 E-value=20 Score=32.51 Aligned_cols=19 Identities=5% Similarity=0.063 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005378 654 RIILLFYLVFVHLFLMYLL 672 (699)
Q Consensus 654 Rl~~l~Y~vlLHlWVm~vL 672 (699)
=++||+.++.||+|-=|..
T Consensus 67 SvgFIasV~~LHi~gK~~~ 85 (88)
T KOG3457|consen 67 SVGFIASVFALHIWGKLTR 85 (88)
T ss_pred hHHHHHHHHHHHHHHHHhh
Confidence 3678899999999965543
No 378
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=41.44 E-value=7.9e+02 Score=30.53 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=12.2
Q ss_pred ccccccccCccCcccccccccccc
Q 005378 125 EQSKDMSKHDADRVEIPETFTDLD 148 (699)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~ 148 (699)
.|...+.++......+....+.+|
T Consensus 253 ~l~~~i~~~~~~l~~~~~~l~~lD 276 (782)
T PRK00409 253 ELSAKVAKNLDFLKFLNKIFDELD 276 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555554444444445555
No 379
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=41.40 E-value=8.2e+02 Score=30.71 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=10.8
Q ss_pred HhhhhhHHHHHHHHHHHHHH
Q 005378 278 CAGLSSRLQEYKSENAQLEE 297 (699)
Q Consensus 278 ~aRLrK~~~ELkke~aqLEe 297 (699)
.-|-+.+++-+.+-++-++.
T Consensus 829 rkr~~~ri~~~~K~~~l~kn 848 (1259)
T KOG0163|consen 829 RKRHRPRIAGIRKINALLKN 848 (1259)
T ss_pred HhhhchHHHHHHHHHHHHHh
Confidence 44555566655555554443
No 380
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.27 E-value=3.5e+02 Score=30.53 Aligned_cols=50 Identities=16% Similarity=0.182 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 326 EVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMES 375 (699)
Q Consensus 326 er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~ 375 (699)
++.+.++++.+-...+..+++.|+.++..++....-++...++.++....
T Consensus 236 slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n 285 (365)
T KOG2391|consen 236 SLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAEN 285 (365)
T ss_pred HHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 34444444555555566666677777777777777777666666655555
No 381
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=40.82 E-value=5.7e+02 Score=28.70 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=11.8
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHH
Q 005378 455 VAMLEVECATLQQELQDMEARLK 477 (699)
Q Consensus 455 ~smLe~dl~qLkQeLqd~e~~~~ 477 (699)
+..++..+.+++.++..++..+.
T Consensus 229 ~~~~~~~l~~~~~~l~~~~~~l~ 251 (421)
T TIGR03794 229 LETVEARIKEARYEIEELENKLN 251 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344555555555555555543
No 382
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=40.64 E-value=3.2e+02 Score=25.73 Aligned_cols=49 Identities=16% Similarity=0.300 Sum_probs=27.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 005378 301 AERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAA 360 (699)
Q Consensus 301 elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~ 360 (699)
+.+.+...|...+..-+..|.....+...+. |+.. .|..|+..++.++.
T Consensus 23 eEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~--FrN~---------QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 23 EEQAKNAELKEQLKEKEQALRKLEQENDSLT--FRNQ---------QLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH---------HHHHHHHHHHHHHH
Confidence 4455666666666666666666555555542 3322 45555555555554
No 383
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=40.51 E-value=1.9e+02 Score=29.69 Aligned_cols=56 Identities=18% Similarity=0.259 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh--hHHHHHHHHHHHHHHHH
Q 005378 343 SEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL--TETRMIQALREELASVE 399 (699)
Q Consensus 343 sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~--~Eke~lqSLE~eLkslQ 399 (699)
+++..|.+.|.+++..+..+....+-+.++.+.|...++. .++. +++|.++.+.-.
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~-i~~L~kev~~~~ 136 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEE-IQELKKEVAGYR 136 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHH-HHHHHHHHHHHH
Confidence 4555677777777777777777777777777777776664 2344 455554444333
No 384
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=40.50 E-value=5.2e+02 Score=28.20 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005378 419 REVELEHRAAEASMALARIQRI 440 (699)
Q Consensus 419 Re~~LEeenaelseALa~lQrk 440 (699)
|+..++.+...+++.+.-+..|
T Consensus 236 rl~~l~~~~~~l~k~~~~~~sK 257 (269)
T PF05278_consen 236 RLGELEMESTRLSKTIKSIKSK 257 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666665555555444443
No 385
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=40.48 E-value=2.2e+02 Score=32.44 Aligned_cols=74 Identities=15% Similarity=0.249 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 005378 306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSE-IETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (699)
Q Consensus 306 ~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sE-i~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~ 380 (699)
.-.+..+..+++.+++.+|.++......+......+ .. .+.|..++..+.+++..++..+..++.+...+.-.+
T Consensus 32 i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~-~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 106 (418)
T TIGR00414 32 LIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQK-KDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSI 106 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344555667777777777777777776665421112 22 456666666666666666666666666665555444
No 386
>PRK00106 hypothetical protein; Provisional
Probab=40.22 E-value=7.1e+02 Score=29.68 Aligned_cols=9 Identities=22% Similarity=0.534 Sum_probs=4.0
Q ss_pred HhHHhhcch
Q 005378 643 ATRFLWRYP 651 (699)
Q Consensus 643 ~g~fLRRyP 651 (699)
++.++++|+
T Consensus 401 Ga~ll~~~~ 409 (535)
T PRK00106 401 GMEFARKYK 409 (535)
T ss_pred HHHHHHHcC
Confidence 344444443
No 387
>PLN02678 seryl-tRNA synthetase
Probab=40.12 E-value=2.2e+02 Score=32.94 Aligned_cols=73 Identities=16% Similarity=0.299 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 005378 307 RSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (699)
Q Consensus 307 ~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~ 380 (699)
-.+..+...++.+++.++.++......+.. +.......+.|..++..+.+++..++..+.+++.+...+.-.+
T Consensus 36 l~ld~~~r~l~~~~e~lr~erN~~sk~I~~-~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~i 108 (448)
T PLN02678 36 IALDKEWRQRQFELDSLRKEFNKLNKEVAK-LKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTI 108 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344556667777777777777777665542 2223344556666666666666666666666666666655544
No 388
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=39.95 E-value=6.8e+02 Score=29.35 Aligned_cols=142 Identities=13% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-------------HHHHHHHH
Q 005378 254 DEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEAR-------------IKQLEQEL 320 (699)
Q Consensus 254 eE~n~~LrsE~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~k-------------l~qLQ~EL 320 (699)
+|++.-|+.-+.- ++|+=++-++|.-..-+|-..-+..++=...+... +..|-++|
T Consensus 326 eEL~~al~~A~~G-----------haR~lEqYadLqEk~~~Ll~~Hr~i~egI~dVKkaAakAg~kG~~~rF~~slaaEi 394 (488)
T PF06548_consen 326 EELDDALQRAMEG-----------HARMLEQYADLQEKHNDLLARHRRIMEGIEDVKKAAAKAGVKGAESRFINSLAAEI 394 (488)
T ss_pred HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHH
Q 005378 321 SVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVER 400 (699)
Q Consensus 321 ~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~ 400 (699)
+.++.++.....-++...-.++.++.+-..-++++.+-|-|++...+.+....++.+.-..+.++- -..+.-|+.
T Consensus 395 Salr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ek~-----~kqiekLK~ 469 (488)
T PF06548_consen 395 SALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQENEKA-----KKQIEKLKR 469 (488)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 005378 401 RAEEERAAHNA 411 (699)
Q Consensus 401 aLe~E~~aHk~ 411 (699)
.++.|....++
T Consensus 470 kh~~Ei~t~kq 480 (488)
T PF06548_consen 470 KHKMEISTMKQ 480 (488)
T ss_pred HHHHHHHHHHH
No 389
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=39.91 E-value=1.8e+02 Score=30.16 Aligned_cols=33 Identities=15% Similarity=0.334 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005378 345 IETLVSSIDALKKQAALSEGNLASLQMNMESIM 377 (699)
Q Consensus 345 i~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~ 377 (699)
+..+...|+..++++..++.-|...+.++.+|.
T Consensus 162 l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 162 LKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 335555666666666666666666666655553
No 390
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=39.86 E-value=5.3e+02 Score=28.05 Aligned_cols=14 Identities=14% Similarity=0.169 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 005378 388 IQALREELASVERR 401 (699)
Q Consensus 388 lqSLE~eLkslQ~a 401 (699)
+...+..+..++..
T Consensus 154 ~~~a~~~~~~a~~~ 167 (346)
T PRK10476 154 VDQARTAQRDAEVS 167 (346)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333334444433
No 391
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=39.83 E-value=4.5e+02 Score=27.28 Aligned_cols=30 Identities=13% Similarity=0.236 Sum_probs=16.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 303 RELSRSYEARIKQLEQELSVYKSEVTKVES 332 (699)
Q Consensus 303 qek~~~Lq~kl~qLQ~EL~~eQ~er~q~es 332 (699)
......|+..+.+-...+..++.++..++.
T Consensus 46 ~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~ 75 (206)
T PF14988_consen 46 AKQTSELQDQLLQKEKEQAKLQQELQALKE 75 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 334445555555555555555555555544
No 392
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=39.15 E-value=2.7e+02 Score=24.43 Aligned_cols=20 Identities=15% Similarity=0.315 Sum_probs=7.9
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 005378 341 KNSEIETLVSSIDALKKQAA 360 (699)
Q Consensus 341 k~sEi~eLe~RL~~LeqeL~ 360 (699)
..++...|..++..|...+.
T Consensus 47 L~~qv~~Ls~qv~~Ls~ql~ 66 (70)
T PF04899_consen 47 LSEQVNNLSQQVQRLSEQLE 66 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444443333
No 393
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=39.12 E-value=7e+02 Score=29.29 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 396 ASVERRAEEERAAHNATKMAAMEREVELE 424 (699)
Q Consensus 396 kslQ~aLe~E~~aHk~Tk~ea~~Re~~LE 424 (699)
+.++..++.|+..|...-.++..++..||
T Consensus 363 ~~i~~~v~~Er~~~~~~l~~~~~~~~~le 391 (582)
T PF09731_consen 363 KEIKEKVEQERNGRLAKLAELNSRLKALE 391 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666554444444444443333
No 394
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=39.09 E-value=3.5e+02 Score=25.73 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 347 TLVSSIDALKKQAALSEGNLASLQMNMESI 376 (699)
Q Consensus 347 eLe~RL~~LeqeL~r~k~rLeelq~E~~~L 376 (699)
.|..++..++..+..+...+..++.....+
T Consensus 98 ~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~ 127 (140)
T PRK03947 98 ILDKRKEELEKALEKLEEALQKLASRIAQL 127 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 395
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=38.98 E-value=6.8e+02 Score=29.07 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005378 420 EVELEHRAAEASMALARIQRIA 441 (699)
Q Consensus 420 e~~LEeenaelseALa~lQrkL 441 (699)
+.++.+..++..++.-+++++.
T Consensus 99 ir~~~~q~~e~~n~~~~l~~~~ 120 (459)
T KOG0288|consen 99 IRELREQKAEFENAELALREMR 120 (459)
T ss_pred HHHHHHhhhhhccchhhHHHHH
Confidence 3333344444444444444433
No 396
>PF06770 Arif-1: Actin-rearrangement-inducing factor (Arif-1); InterPro: IPR010639 This family consists of several Nucleopolyhedrovirus actin-rearrangement-inducing factor (Arif-1) proteins. In response to Autographa californica nuclear polyhedrosis virus (AcMNPV) infection, a sequential rearrangement of the actin cytoskeleton occurs this is induced by Arif-1 []. Arif-1 is tyrosine phosphorylated and is located at the plasma membrane as a component of the actin rearrangement-inducing complex [].
Probab=38.51 E-value=35 Score=35.24 Aligned_cols=29 Identities=14% Similarity=0.462 Sum_probs=27.4
Q ss_pred HhhcchhHHHHHHHHHHHHHHHHHHHHHh
Q 005378 646 FLWRYPIARIILLFYLVFVHLFLMYLLHR 674 (699)
Q Consensus 646 fLRRyP~aRl~~l~Y~vlLHlWVm~vL~~ 674 (699)
|++.|..+=+++++.++.+|.|-|++++.
T Consensus 164 f~kqnr~~l~~~~l~~l~~~~w~l~v~~k 192 (196)
T PF06770_consen 164 FFKQNRFTLIMFVLLILVLNCWNLYVLYK 192 (196)
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999984
No 397
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=38.42 E-value=8.3e+02 Score=29.92 Aligned_cols=34 Identities=12% Similarity=0.088 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 005378 436 RIQRIADERTAKAGELEQKVAMLEVECATLQQEL 469 (699)
Q Consensus 436 ~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeL 469 (699)
..++|+.--+.++..|+.|.+..+.+...+...+
T Consensus 228 qye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~l 261 (861)
T KOG1899|consen 228 QYETKLKSTKGEMAPLREQRSEKNDEEMRLLRTL 261 (861)
T ss_pred HHHhhcccccchhhhHHHHHhhhhhHHHHHHHHH
Confidence 4455666666778888888888777776665554
No 398
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=38.39 E-value=1.6e+02 Score=25.30 Aligned_cols=43 Identities=16% Similarity=0.312 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005378 283 SRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKS 325 (699)
Q Consensus 283 K~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~ 325 (699)
.++.+|....+-.|..+.+|.+.+...+..+..|+..+..+..
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~ 46 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRE 46 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554444444444444444444444444333
No 399
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=38.22 E-value=3.1e+02 Score=24.98 Aligned_cols=82 Identities=12% Similarity=0.163 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 005378 284 RLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSE 363 (699)
Q Consensus 284 ~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k 363 (699)
..+.......-||.++.....++..+......+...+..+.......+. +..++...+.++..|+.-.+.|+.=.++++
T Consensus 15 el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~-~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE 93 (99)
T PF10046_consen 15 ELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQP-YLQQIDQIEEQVTELEQTVYELDEYSKELE 93 (99)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566788888887888888888888888888777777666655 444555555555555555555555444444
Q ss_pred HHH
Q 005378 364 GNL 366 (699)
Q Consensus 364 ~rL 366 (699)
.++
T Consensus 94 ~k~ 96 (99)
T PF10046_consen 94 SKF 96 (99)
T ss_pred HHh
Confidence 443
No 400
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=38.00 E-value=1.4e+02 Score=28.11 Aligned_cols=46 Identities=26% Similarity=0.294 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 541 HMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 586 (699)
Q Consensus 541 ~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~~~ 586 (699)
-..++.++..|.+++.+=..++..|..|++.|.+..+.+..++...
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888999999999999999999988887654
No 401
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=37.89 E-value=3.3e+02 Score=25.24 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=8.1
Q ss_pred HhHHHHHHHHHHHHHHHH
Q 005378 305 LSRSYEARIKQLEQELSV 322 (699)
Q Consensus 305 k~~~Lq~kl~qLQ~EL~~ 322 (699)
+...+..++..++..+..
T Consensus 43 ~~~~~~~Rl~~lE~~l~~ 60 (106)
T PF10805_consen 43 RLDEHDRRLQALETKLEH 60 (106)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333344444444444444
No 402
>PRK09343 prefoldin subunit beta; Provisional
Probab=37.75 E-value=3.6e+02 Score=25.53 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Q 005378 436 RIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRG 479 (699)
Q Consensus 436 ~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~ 479 (699)
+++.+++........+++++..+......+...+.+.+.-..-.
T Consensus 4 ~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL 47 (121)
T PRK09343 4 NIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEEL 47 (121)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888888888888777776665444433
No 403
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=37.25 E-value=4e+02 Score=31.27 Aligned_cols=42 Identities=19% Similarity=0.306 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHH
Q 005378 345 IETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (699)
Q Consensus 345 i~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke 386 (699)
+..|-+++..+..++..+...=+.+..|+++|+.+......+
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~ 102 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQ 102 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 345555555554444444444444445555554444443333
No 404
>PLN02320 seryl-tRNA synthetase
Probab=37.16 E-value=2.4e+02 Score=33.22 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 005378 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (699)
Q Consensus 309 Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~ 380 (699)
+..+...++.+++.++.++......+.. .....+.+.|..+...+.+++..++..+..++.+...+.-.+
T Consensus 98 ld~~~r~~~~~~~~lr~ern~~sk~i~~--~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~i 167 (502)
T PLN02320 98 LYENMLALQKEVERLRAERNAVANKMKG--KLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSI 167 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3344555666667777777766555543 122334556666666666666666666666666666555443
No 405
>PRK04406 hypothetical protein; Provisional
Probab=37.08 E-value=2.8e+02 Score=24.37 Aligned_cols=12 Identities=8% Similarity=0.116 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 005378 309 YEARIKQLEQEL 320 (699)
Q Consensus 309 Lq~kl~qLQ~EL 320 (699)
|..-+...|.++
T Consensus 30 LN~~v~~Qq~~I 41 (75)
T PRK04406 30 LNDALSQQQLLI 41 (75)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 406
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=36.91 E-value=2.7e+02 Score=31.86 Aligned_cols=73 Identities=19% Similarity=0.360 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 005378 307 RSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (699)
Q Consensus 307 ~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~ 380 (699)
-.|..+..+++.++..+|.++......+... .......+.|..+...+.++++.++..+..++.+...+.-.+
T Consensus 31 ~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~-~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 103 (425)
T PRK05431 31 LELDEERRELQTELEELQAERNALSKEIGQA-KRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRI 103 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455566777777777777777776655431 112223445666666666666666666666666666655443
No 407
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=36.74 E-value=6.2e+02 Score=27.99 Aligned_cols=48 Identities=17% Similarity=0.302 Sum_probs=26.5
Q ss_pred HHHhhhhhH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 005378 276 RVCAGLSSR-LQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVY 323 (699)
Q Consensus 276 ~~~aRLrK~-~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~e 323 (699)
++..+|++. ..+++.....+++.+.+....+..++.++..|+..+...
T Consensus 59 ~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y 107 (301)
T PF06120_consen 59 ELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNY 107 (301)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444442 344555566666666666666666666666666665543
No 408
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=36.59 E-value=5.1e+02 Score=26.91 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 388 IQALREELASVERRAEEERAAHNATKM 414 (699)
Q Consensus 388 lqSLE~eLkslQ~aLe~E~~aHk~Tk~ 414 (699)
....+.+|.+++..+..-...|..+-.
T Consensus 80 k~~qe~eI~~Le~e~~~~~~e~~~~l~ 106 (206)
T PF14988_consen 80 KEQQEREIQTLEEELEKMRAEHAEKLQ 106 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666655566655533
No 409
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=36.57 E-value=3e+02 Score=24.30 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 349 VSSIDALKKQAALSEGNLASLQMN 372 (699)
Q Consensus 349 e~RL~~LeqeL~r~k~rLeelq~E 372 (699)
..++..++.++..++..+..+...
T Consensus 68 ~~~~~~~~~~i~~l~~~~~~l~~~ 91 (106)
T PF01920_consen 68 EERIEKLEKEIKKLEKQLKYLEKK 91 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 410
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=36.44 E-value=7.2e+02 Score=28.63 Aligned_cols=102 Identities=28% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHH
Q 005378 400 RRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLE----VECATLQQELQDMEAR 475 (699)
Q Consensus 400 ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe----~dl~qLkQeLqd~e~~ 475 (699)
.++-.|+++-+.+++.+.+....|++.- -.-+.=+-..|+||+=+..-|+.|+--+- .+..+|+|+|.-|+.+
T Consensus 263 ~aileeL~eIk~~q~~Leesye~Lke~~---krdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqElasmeer 339 (455)
T KOG3850|consen 263 DAILEELREIKETQALLEESYERLKEQI---KRDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQELASMEER 339 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhccCChhHHHHHHHHHHHHHHHHHHhHHHHH---HhhhhHHHHHHH
Q 005378 476 LKRGQKKSPEEANQAIQAWQDEVERARQGQRDAE---NKLSSLEAEVQK 521 (699)
Q Consensus 476 ~~r~qqk~~~~~~qei~~leeEl~r~r~~~~~le---~~l~~lE~elqk 521 (699)
..=-. -+|.|..++.+| .+|+.+|-..+.
T Consensus 340 vaYQs-----------------yERaRdIqEalEscqtrisKlEl~qq~ 371 (455)
T KOG3850|consen 340 VAYQS-----------------YERARDIQEALESCQTRISKLELQQQQ 371 (455)
T ss_pred HHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 411
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=36.43 E-value=2.1e+02 Score=28.65 Aligned_cols=35 Identities=20% Similarity=0.154 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 549 RELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL 583 (699)
Q Consensus 549 ~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a 583 (699)
..+.+++.....+++....|..+|..|.+.+...|
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444444444444445555556666666555433
No 412
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=36.26 E-value=8.9e+02 Score=29.67 Aligned_cols=11 Identities=27% Similarity=0.386 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 005378 392 REELASVERRA 402 (699)
Q Consensus 392 E~eLkslQ~aL 402 (699)
+..|.+.+.-|
T Consensus 152 r~kLnatEEmL 162 (861)
T KOG1899|consen 152 RNKLNATEEML 162 (861)
T ss_pred HhhhchHHHHH
Confidence 33344444333
No 413
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=36.08 E-value=3.4e+02 Score=24.73 Aligned_cols=16 Identities=6% Similarity=0.092 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 005378 351 SIDALKKQAALSEGNL 366 (699)
Q Consensus 351 RL~~LeqeL~r~k~rL 366 (699)
++..++..+......+
T Consensus 71 ~~e~le~~i~~l~~~~ 86 (105)
T cd00632 71 RLETIELRIKRLERQE 86 (105)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 414
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.04 E-value=3.1e+02 Score=24.30 Aligned_cols=14 Identities=14% Similarity=0.164 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 005378 401 RAEEERAAHNATKM 414 (699)
Q Consensus 401 aLe~E~~aHk~Tk~ 414 (699)
.-++-+..|+..+.
T Consensus 54 eneqlk~e~~~WQe 67 (79)
T COG3074 54 ENEQLKEEQNGWQE 67 (79)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444444444
No 415
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.04 E-value=3.5e+02 Score=29.84 Aligned_cols=38 Identities=13% Similarity=0.038 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 295 LEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES 332 (699)
Q Consensus 295 LEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es 332 (699)
+|..-+.|.+....+...+..|+.++.+.+..+...++
T Consensus 120 ~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~ 157 (300)
T KOG2629|consen 120 LEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQS 157 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34433444444444444555555555444444444333
No 416
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=36.03 E-value=5.2e+02 Score=26.89 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005378 285 LQEYKSENAQLEELLVAERELSRSYEA 311 (699)
Q Consensus 285 ~~ELkke~aqLEe~l~elqek~~~Lq~ 311 (699)
-..|..+++++|.++.+-+++...|+.
T Consensus 107 R~~LeAQka~~eR~ia~~~~ra~~Lqa 133 (192)
T PF11180_consen 107 RAQLEAQKAQLERLIAESEARANRLQA 133 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666655554444444444
No 417
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=35.74 E-value=6.8e+02 Score=28.11 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=10.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHH
Q 005378 448 AGELEQKVAMLEVECATLQQELQ 470 (699)
Q Consensus 448 a~eLeqQ~smLe~dl~qLkQeLq 470 (699)
...++.++..++..+..++.++.
T Consensus 229 ~~~~~~~l~~~~~~l~~~~~~l~ 251 (421)
T TIGR03794 229 LETVEARIKEARYEIEELENKLN 251 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444555555555543
No 418
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=35.19 E-value=1.6e+02 Score=27.87 Aligned_cols=46 Identities=26% Similarity=0.261 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 541 HMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 586 (699)
Q Consensus 541 ~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~~~ 586 (699)
-..++.++..|..++.+=..++..|..|++.|.+.-+.+..+++..
T Consensus 10 l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 10 LDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567888888999998888999999999999999988888887764
No 419
>PF15456 Uds1: Up-regulated During Septation
Probab=34.33 E-value=2.7e+02 Score=26.82 Aligned_cols=11 Identities=36% Similarity=0.425 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 005378 287 EYKSENAQLEE 297 (699)
Q Consensus 287 ELkke~aqLEe 297 (699)
+|+++...|..
T Consensus 26 ~LKkEl~~L~~ 36 (124)
T PF15456_consen 26 ELKKELRSLDS 36 (124)
T ss_pred HHHHHHHHHHH
Confidence 33443333333
No 420
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=34.30 E-value=1.3e+02 Score=29.14 Aligned_cols=44 Identities=30% Similarity=0.305 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 286 QEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTK 329 (699)
Q Consensus 286 ~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q 329 (699)
+||+..++.||-..+.+.-....|-.++..|+.+|.+++..+..
T Consensus 28 aEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~ 71 (134)
T PF08232_consen 28 AEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKK 71 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56666677777776666666777777888888888888777665
No 421
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=34.26 E-value=3.4e+02 Score=28.49 Aligned_cols=27 Identities=26% Similarity=0.129 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 555 LYYKQTQLETMASEKAAAEFQLEKEMN 581 (699)
Q Consensus 555 L~eKQ~qlE~L~~Er~sL~~qLE~~~~ 581 (699)
++.=+.+|.++..|..++..|+..+..
T Consensus 164 ~l~ie~~L~~v~~eIe~~~~~~~~l~~ 190 (262)
T PF14257_consen 164 LLEIERELSRVRSEIEQLEGQLKYLDD 190 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555556666655544
No 422
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=34.25 E-value=4e+02 Score=26.94 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=9.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Q 005378 333 NLAEALAAKNSEIETLVSSIDAL 355 (699)
Q Consensus 333 ~~~eaLaak~sEi~eLe~RL~~L 355 (699)
.+...|....+.|..|+.+|..+
T Consensus 153 ~l~~~l~~~~g~I~~L~~~I~~~ 175 (184)
T PF05791_consen 153 ELQSILAGENGDIPQLQKQIENL 175 (184)
T ss_dssp HHHHHHHHTT--HHHHHHHHHHH
T ss_pred HHHHHHhcccCCHHHHHHHHHHH
Confidence 33344444444444444444443
No 423
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=34.17 E-value=3e+02 Score=33.05 Aligned_cols=72 Identities=25% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHH---HhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 496 DEVERARQGQRDAE---NKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAA 572 (699)
Q Consensus 496 eEl~r~r~~~~~le---~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL 572 (699)
.++..+++..+-.+ -+|..+|..-|+|..++.+ |-+.+.+|+..+..||..++.|..+...-
T Consensus 76 s~~r~~~e~~RI~~sVs~EL~ele~krqel~seI~~---------------~n~kiEelk~~i~~~q~eL~~Lk~~ieqa 140 (907)
T KOG2264|consen 76 SIGRILREQKRILASVSLELTELEVKRQELNSEIEE---------------INTKIEELKRLIPQKQLELSALKGEIEQA 140 (907)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---------------HHHHHHHHHHHHHHhHHHHHHHHhHHHHH
Q ss_pred HHHHHHHHHH
Q 005378 573 EFQLEKEMNR 582 (699)
Q Consensus 573 ~~qLE~~~~~ 582 (699)
+++++.+..+
T Consensus 141 q~~~~El~~~ 150 (907)
T KOG2264|consen 141 QRQLEELRET 150 (907)
T ss_pred HHHHHHHHhh
No 424
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=34.12 E-value=7e+02 Score=27.80 Aligned_cols=44 Identities=9% Similarity=0.170 Sum_probs=22.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005378 278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELS 321 (699)
Q Consensus 278 ~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~ 321 (699)
.+-|+--.-.++....|++.+-....+++.....-+..|-.++.
T Consensus 215 KVt~k~DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit 258 (384)
T KOG0972|consen 215 KVTLKQDAKDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEIT 258 (384)
T ss_pred eehhccccHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 33445555667777777766544444444444444444444443
No 425
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=33.94 E-value=1.4e+02 Score=34.89 Aligned_cols=13 Identities=8% Similarity=0.240 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 005378 312 RIKQLEQELSVYK 324 (699)
Q Consensus 312 kl~qLQ~EL~~eQ 324 (699)
+..+|+++|+.++
T Consensus 77 kasELEKqLaaLr 89 (475)
T PRK13729 77 TAAQMQKQYEEIR 89 (475)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 426
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.86 E-value=2e+02 Score=32.28 Aligned_cols=63 Identities=13% Similarity=0.138 Sum_probs=47.4
Q ss_pred HHHHHHHHHhhhhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005378 253 LDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQ 315 (699)
Q Consensus 253 LeE~n~~LrsE~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~q 315 (699)
.+.+....+.|.+.+.+.-+.|.+...-|++-.++|....+.||+....++..++.|..++.+
T Consensus 216 ~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 216 REKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 455556666666666666677888888888888888888888888777777777777777666
No 427
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=33.83 E-value=2.8e+02 Score=26.87 Aligned_cols=57 Identities=18% Similarity=0.216 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 005378 401 RAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQD 471 (699)
Q Consensus 401 aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd 471 (699)
+++++++.-..-|+++.+|.+.||.++-... +--.+|-+.++|||..+++-+.++..
T Consensus 15 r~ErdR~~WeiERaEmkarIa~LEGE~r~~e--------------~l~~dL~rrIkMLE~aLkqER~k~~~ 71 (134)
T PF08232_consen 15 RFERDRNQWEIERAEMKARIAFLEGERRGQE--------------NLKKDLKRRIKMLEYALKQERAKYKK 71 (134)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445555555557777778888887772222 22347788899999999988777644
No 428
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=33.40 E-value=1.6e+02 Score=27.35 Aligned_cols=88 Identities=23% Similarity=0.223 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHH
Q 005378 285 LQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAK---NSEIETLVSSIDALKKQAAL 361 (699)
Q Consensus 285 ~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak---~sEi~eLe~RL~~LeqeL~r 361 (699)
.++|+.+.+=+|+...-++-+...++.+-..|..+|.+.+..+-...+ ...+..+ ...-+.++.+|..+..++..
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~--~~~~~~g~~~~~~~~~l~~eLk~a~~qi~~ 80 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDS--LAKLSEGGSPSGREAELQEELKLAREQINE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc--cccCCCCCCCccccHHHHHHHHHHHHHHHH
Confidence 467888888888877777777888888888888888887765533321 0011111 11223567777777777777
Q ss_pred HHHHHHHHHHHHH
Q 005378 362 SEGNLASLQMNME 374 (699)
Q Consensus 362 ~k~rLeelq~E~~ 374 (699)
+..++-+++-+|+
T Consensus 81 Ls~kv~eLq~ENR 93 (96)
T PF11365_consen 81 LSGKVMELQYENR 93 (96)
T ss_pred HhhHHHHHhhccc
Confidence 7777777777665
No 429
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=33.28 E-value=9.3e+02 Score=28.96 Aligned_cols=39 Identities=28% Similarity=0.308 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 541 HMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNR 582 (699)
Q Consensus 541 ~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~ 582 (699)
...|+.++..+..++.+. .+.|..-|......|+.....
T Consensus 344 ~~~Le~~~~~l~~~~~~~---A~~Ls~~R~~~A~~L~~~v~~ 382 (557)
T COG0497 344 LEALEKEVKKLKAELLEA---AEALSAIRKKAAKELEKEVTA 382 (557)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777776643 566777777777777776543
No 430
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=32.63 E-value=1.6e+02 Score=34.32 Aligned_cols=51 Identities=14% Similarity=0.273 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHH
Q 005378 351 SIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRA 402 (699)
Q Consensus 351 RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aL 402 (699)
.|...+..+..++++|+.++.++..+.....+++.+ +..++.+++.|+.++
T Consensus 70 ALteqQ~kasELEKqLaaLrqElq~~saq~~dle~K-IkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRR-IEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH-HHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444 555555555555544
No 431
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=32.49 E-value=2.8e+02 Score=28.09 Aligned_cols=47 Identities=19% Similarity=0.239 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 285 LQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVE 331 (699)
Q Consensus 285 ~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~e 331 (699)
...+..++..++..+..++.++..|+.++..|...+...+.++..+-
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~ 145 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLI 145 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666666665555555554443
No 432
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=32.47 E-value=2.5e+02 Score=27.54 Aligned_cols=37 Identities=22% Similarity=0.189 Sum_probs=25.9
Q ss_pred chhhhhHHHHHHHHHhhhhccchHHHHHHHHHhhhhh
Q 005378 247 TKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSS 283 (699)
Q Consensus 247 ~~lqkQLeE~n~~LrsE~etl~~ke~qLa~~~aRLrK 283 (699)
..+...++.++.-+++....+.+++.+|.++....++
T Consensus 22 ~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~ 58 (135)
T TIGR03495 22 RNARADLERANRVLKAQQAELASKANQLIVLLALAKR 58 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3466677777777777777777777777777665533
No 433
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=32.27 E-value=9.2e+02 Score=28.60 Aligned_cols=40 Identities=18% Similarity=0.135 Sum_probs=27.2
Q ss_pred HHHHHHHhHHhhhhHhHhHHhhcchhHHHHHHHHHHHHHHHH
Q 005378 627 VQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFL 668 (699)
Q Consensus 627 rrvk~A~~~lDs~slr~g~fLRRyP~aRl~~l~Y~vlLHlWV 668 (699)
++|.++-=.+|.+...+- =.||-+-.-.++||=+..||-+
T Consensus 558 q~vqs~~i~ld~~~~~~n--~~r~~i~k~V~~v~~~~~~fk~ 597 (622)
T COG5185 558 QLVQSTEIKLDELKVDLN--RKRYKIHKQVIHVIDITSKFKI 597 (622)
T ss_pred HHHHHHHhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhh
Confidence 456665566777765443 3578888888888888777654
No 434
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=32.21 E-value=1.1e+03 Score=29.38 Aligned_cols=6 Identities=50% Similarity=0.866 Sum_probs=3.0
Q ss_pred Hhhcch
Q 005378 646 FLWRYP 651 (699)
Q Consensus 646 fLRRyP 651 (699)
||++||
T Consensus 754 ~L~~~~ 759 (782)
T PRK00409 754 FLKKHP 759 (782)
T ss_pred HHcCCC
Confidence 445554
No 435
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=31.96 E-value=3e+02 Score=31.81 Aligned_cols=77 Identities=17% Similarity=0.296 Sum_probs=52.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 005378 305 LSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRE 381 (699)
Q Consensus 305 k~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s 381 (699)
+.-.|..+...+..+++.+|+.++.....+...+..+......|...+..+..+++..+..+.++..++..+.-.+-
T Consensus 30 ~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ll~ip 106 (429)
T COG0172 30 KLLELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDTLLLTIP 106 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhCC
Confidence 33455556677777777777777777666654444444456677777788888888888888888888777665544
No 436
>PRK00295 hypothetical protein; Provisional
Probab=31.87 E-value=3.3e+02 Score=23.43 Aligned_cols=12 Identities=25% Similarity=0.327 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 005378 286 QEYKSENAQLEE 297 (699)
Q Consensus 286 ~ELkke~aqLEe 297 (699)
.+|-...+-.|.
T Consensus 8 ~~LE~kla~qE~ 19 (68)
T PRK00295 8 TELESRQAFQDD 19 (68)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 437
>PRK00846 hypothetical protein; Provisional
Probab=31.85 E-value=3.8e+02 Score=23.98 Aligned_cols=12 Identities=0% Similarity=-0.108 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 005378 309 YEARIKQLEQEL 320 (699)
Q Consensus 309 Lq~kl~qLQ~EL 320 (699)
|..-+...+..+
T Consensus 32 LN~~v~~qq~~I 43 (77)
T PRK00846 32 LSEALADARLTG 43 (77)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 438
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=31.73 E-value=7.8e+02 Score=27.60 Aligned_cols=106 Identities=19% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH------HHHHH
Q 005378 297 ELLVAERELSRSYEARIKQLEQELS-VYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEG------NLASL 369 (699)
Q Consensus 297 e~l~elqek~~~Lq~kl~qLQ~EL~-~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~------rLeel 369 (699)
.....++.+...|+.++.++...+. .....+........+.+.....++..++.++..+++.+..+.. .|.++
T Consensus 53 ~q~~~~~~~~~~L~~ql~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~dW~LaEa 132 (372)
T PF04375_consen 53 QQLQQLQQQLQALQQQLQQLQQQLEAQQAQQLRQLQKQQQEQLQQLQQELAQLQQQLAELQQQLAALSQRSRDDWLLAEA 132 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHhHHHHHH
Q ss_pred HHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005378 370 QMNMESIMRNRELTETRMIQALREELASVERRAEE 404 (699)
Q Consensus 370 q~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~ 404 (699)
+-=.+-..+++ -+++. ..+.-.-|+++..+|..
T Consensus 133 eyLlrlA~qrL-~l~~D-v~~Al~lL~~AD~rLa~ 165 (372)
T PF04375_consen 133 EYLLRLANQRL-QLEGD-VQTALALLQSADQRLAE 165 (372)
T ss_pred HHHHHHHHHHH-HHcCC-HHHHHHHHHHHHHHHHh
No 439
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=31.72 E-value=5.4e+02 Score=25.78 Aligned_cols=68 Identities=10% Similarity=0.150 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 005378 308 SYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (699)
Q Consensus 308 ~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~ 382 (699)
....++..|..+..++...+...+. .+.+ ...++..+ =+.+.++.+.+..+++.+++++++|...+..
T Consensus 47 ~~~~e~~~L~~d~e~L~~q~~~ek~-~r~~---~e~~l~~~---Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 47 EHEVELELLREDNEQLETQYEREKE-LRKQ---AEEELLEL---EDQWRQERKDLQSQVEQLEEENRQLELKLKN 114 (158)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH-HHHH---HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4444555666665555555544333 2211 11111111 1456666667777777777777777755443
No 440
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=31.58 E-value=9e+02 Score=28.28 Aligned_cols=43 Identities=19% Similarity=0.030 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 005378 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT 383 (699)
Q Consensus 341 k~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~ 383 (699)
...+...|..|...|++++...+.+.++.-.+..+-...+..+
T Consensus 248 lkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k 290 (502)
T KOG0982|consen 248 LKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIK 290 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4456668889999999999988888887777766655555443
No 441
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=31.10 E-value=6e+02 Score=26.11 Aligned_cols=17 Identities=47% Similarity=0.491 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005378 343 SEIETLVSSIDALKKQA 359 (699)
Q Consensus 343 sEi~eLe~RL~~LeqeL 359 (699)
..|.+|+..|..++.+.
T Consensus 131 ~~i~~Le~ki~el~~~~ 147 (190)
T PF05266_consen 131 SEIKELEMKILELQRQA 147 (190)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444333
No 442
>PRK02793 phi X174 lysis protein; Provisional
Probab=31.04 E-value=3e+02 Score=23.97 Aligned_cols=11 Identities=55% Similarity=0.818 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 005378 310 EARIKQLEQEL 320 (699)
Q Consensus 310 q~kl~qLQ~EL 320 (699)
++++..||..+
T Consensus 7 e~Ri~~LE~~l 17 (72)
T PRK02793 7 EARLAELESRL 17 (72)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 443
>PF14282 FlxA: FlxA-like protein
Probab=30.83 E-value=3.2e+02 Score=25.33 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 556 YYKQTQLETMASEKAAAEFQLEKEMNR 582 (699)
Q Consensus 556 ~eKQ~qlE~L~~Er~sL~~qLE~~~~~ 582 (699)
.+|+.+++.|..+...|..||..+...
T Consensus 47 e~k~~q~q~Lq~QI~~LqaQI~qlq~q 73 (106)
T PF14282_consen 47 EQKQQQIQLLQAQIQQLQAQIAQLQSQ 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777766544
No 444
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=30.67 E-value=1.7e+02 Score=27.79 Aligned_cols=45 Identities=27% Similarity=0.217 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 541 HMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE 585 (699)
Q Consensus 541 ~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~~ 585 (699)
-..++.||.+|-.++-.-.+.+.+|.+|+++|++..+.+..|+..
T Consensus 10 v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 10 VDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 456778888888888888899999999999999999998887754
No 445
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=30.38 E-value=7.2e+02 Score=30.15 Aligned_cols=10 Identities=20% Similarity=0.425 Sum_probs=5.7
Q ss_pred hccccccccc
Q 005378 98 TITTGKTQKN 107 (699)
Q Consensus 98 ~~~~~~~~~~ 107 (699)
++||+++..+
T Consensus 198 ~fTS~s~v~~ 207 (656)
T PRK06975 198 LLTSSEAVRN 207 (656)
T ss_pred EECCHHHHHH
Confidence 4566666554
No 446
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=30.10 E-value=2.3e+02 Score=29.52 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 005378 446 AKAGELEQKVAMLEVECATLQQELQDME 473 (699)
Q Consensus 446 ~ra~eLeqQ~smLe~dl~qLkQeLqd~e 473 (699)
.-++-+++|+.+|+.-+.+=+++|+.++
T Consensus 167 ~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 167 EDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445667777777777777777776553
No 447
>PF08409 DUF1736: Domain of unknown function (DUF1736); InterPro: IPR013618 This domain of unknown function is found in various hypothetical metazoan proteins.
Probab=29.97 E-value=55 Score=29.25 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=19.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Q 005378 650 YPIARIILLFYLVFVHLFLMYLLH 673 (699)
Q Consensus 650 yP~aRl~~l~Y~vlLHlWVm~vL~ 673 (699)
+...|++.+.|+..+|+|.++.=.
T Consensus 21 ~~~tR~LT~~yl~~~n~~LLl~P~ 44 (80)
T PF08409_consen 21 SLLTRWLTYNYLPAFNLWLLLFPS 44 (80)
T ss_pred cHHHHHHHHHHHHHHHHHHHHCcc
Confidence 456899999999999999886543
No 448
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=29.74 E-value=5.3e+02 Score=25.05 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHH
Q 005378 367 ASLQMNMESIMRNRELTETRMIQALREELASV 398 (699)
Q Consensus 367 eelq~E~~~L~e~~s~~Eke~lqSLE~eLksl 398 (699)
..++.+..=|+.=+++.+.. +...+.+|+.+
T Consensus 80 ~~~q~EldDLL~ll~Dle~K-~~kyk~rLk~L 110 (136)
T PF04871_consen 80 KEAQSELDDLLVLLGDLEEK-RKKYKERLKEL 110 (136)
T ss_pred HhhhhhHHHHHHHHHhHHHH-HHHHHHHHHHc
Confidence 44555556666655555555 44455555543
No 449
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=29.59 E-value=18 Score=42.14 Aligned_cols=33 Identities=12% Similarity=0.296 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNM 373 (699)
Q Consensus 341 k~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~ 373 (699)
++.++..+..||-..+++|.+-......+-..+
T Consensus 431 Kd~qmksII~RL~~vEeELrre~~~m~~~~~~k 463 (495)
T PF12004_consen 431 KDSQMKSIISRLMAVEEELRREHAEMQAVLDHK 463 (495)
T ss_dssp ---------------------------------
T ss_pred hHHHHHHHHhhhhhhhhhhhhhHHHHhcccccc
Confidence 444444444444444444444444333333333
No 450
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=29.39 E-value=4.5e+02 Score=25.11 Aligned_cols=32 Identities=13% Similarity=0.295 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNM 373 (699)
Q Consensus 342 ~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~ 373 (699)
..-+.-+-.|++++...+..++.....++++.
T Consensus 32 a~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dV 63 (112)
T PF07439_consen 32 AASRASMHRRLDELVERVTTLESSVSTLKADV 63 (112)
T ss_pred hhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhH
Confidence 34445556666666666666665555555443
No 451
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=29.12 E-value=4.3e+02 Score=25.78 Aligned_cols=52 Identities=31% Similarity=0.290 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005378 353 DALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEE 405 (699)
Q Consensus 353 ~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E 405 (699)
..+++.+.-....++.++.+..+....+...... +..|+...+.+.+.++.+
T Consensus 30 ~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~-L~~Le~~~~~~~~e~~~~ 81 (160)
T PF13094_consen 30 RALERQLAANLHQLELLQEEIEKEEAALERDYEY-LQELEKNAKALEREREEE 81 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443333222222 444444444444444443
No 452
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=29.08 E-value=6.3e+02 Score=25.74 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005378 311 ARIKQLEQELSVYKSEVT 328 (699)
Q Consensus 311 ~kl~qLQ~EL~~eQ~er~ 328 (699)
.++..|+.++..++.++.
T Consensus 110 ~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 110 EELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444444
No 453
>PF14739 DUF4472: Domain of unknown function (DUF4472)
Probab=29.04 E-value=5.1e+02 Score=24.62 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 005378 312 RIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDAL 355 (699)
Q Consensus 312 kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~L 355 (699)
+.-++-++|-.+|-+...+...+........+++-.+++|+-.+
T Consensus 4 eKLqISKeLVDLQIe~~rL~Eq~EaE~FELk~~vL~lE~rvleL 47 (108)
T PF14739_consen 4 EKLQISKELVDLQIETNRLREQHEAEKFELKNEVLRLENRVLEL 47 (108)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777776655444444444444444443333
No 454
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=28.87 E-value=71 Score=26.07 Aligned_cols=23 Identities=22% Similarity=0.655 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHH--HHHhhccchh
Q 005378 658 LFYLVFVHLFLMY--LLHRLQEQAD 680 (699)
Q Consensus 658 l~Y~vlLHlWVm~--vL~~~~~~~~ 680 (699)
|++++..-+|.+| |||+.+|.+.
T Consensus 20 Fl~~~~~F~~F~~Kqilfr~~~~sn 44 (54)
T PF06716_consen 20 FLFCLVVFIWFVYKQILFRNNPQSN 44 (54)
T ss_pred HHHHHHHHHHHHHHHHHHccCCCcc
Confidence 3333344455554 7888887643
No 455
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=28.78 E-value=4.1e+02 Score=23.41 Aligned_cols=70 Identities=17% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 005378 333 NLAEALAAKNSEIETLVSSIDALKKQAA-LSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAE 403 (699)
Q Consensus 333 ~~~eaLaak~sEi~eLe~RL~~LeqeL~-r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe 403 (699)
++.+.+.....+.=.|+-||.-|++.+. ..-.....+..++-.|......+.++ ++.+...|..++.+++
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~e-l~~~~~~l~~a~~~~e 74 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRE-LQEKKKLLKEAEKAIE 74 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
No 456
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=28.67 E-value=19 Score=41.94 Aligned_cols=30 Identities=27% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 005378 271 EARLARVCAGLSSRLQEYKSENAQLEELLV 300 (699)
Q Consensus 271 e~qLa~~~aRLrK~~~ELkke~aqLEe~l~ 300 (699)
|.+|-.-.....|-+.+++...+.=|+-|+
T Consensus 396 ErrLl~QEqqt~Kll~qyq~RLedSE~RLr 425 (495)
T PF12004_consen 396 ERRLLSQEQQTQKLLLQYQARLEDSEERLR 425 (495)
T ss_dssp ------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 333333333333333444444444443333
No 457
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=28.49 E-value=5.4e+02 Score=24.78 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 005378 541 HMELEKRYRELTDLLYYKQ 559 (699)
Q Consensus 541 ~~ele~rl~eLte~L~eKQ 559 (699)
..+++.++..|.+.++.|-
T Consensus 120 ~~~l~~qv~~~~~~~~~~~ 138 (141)
T PRK08476 120 KEQLLSQMPEFKEALNAKL 138 (141)
T ss_pred HHHHHHhHHHHHHHHHHHh
Confidence 4567888888888888773
No 458
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.48 E-value=1.1e+03 Score=28.44 Aligned_cols=118 Identities=9% Similarity=0.093 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-------HHHHHHHHHHHHHHHHhhccCCh----hHHHHHHHHHHHHHHH
Q 005378 432 MALARIQRIADERTAKAGELEQKVAMLEVE-------CATLQQELQDMEARLKRGQKKSP----EEANQAIQAWQDEVER 500 (699)
Q Consensus 432 eALa~lQrkL~EEk~ra~eLeqQ~smLe~d-------l~qLkQeLqd~e~~~~r~qqk~~----~~~~qei~~leeEl~r 500 (699)
.=+..++++.+.+.++..+++++.+.++.. ++.+..+.+++.++..+..+.-. .+... .+-|+.|+..
T Consensus 588 rH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~A-ErdFk~Elq~ 666 (741)
T KOG4460|consen 588 RHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDA-ERDFKKELQL 666 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhH-HHHHHHHHHH
Confidence 334455666666666666666555554333 33333344444554444432110 01111 2345555544
Q ss_pred HHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh--hcchhhhhHHHHHHHHHHHHH
Q 005378 501 ARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAE--HYSREEHMELEKRYRELTDLL 555 (699)
Q Consensus 501 ~r~~~~~le~~l~~lE~elqkLr~e~~~lq~qle--q~~~~~~~ele~rl~eLte~L 555 (699)
+-...+.+...|........|-+.-|..++..+. +|. .-++|-+.+++-|
T Consensus 667 ~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~Y~-----l~~~Q~~~iqsiL 718 (741)
T KOG4460|consen 667 IPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPTYI-----LSAYQRKCIQSIL 718 (741)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc-----ccHHHHHHHHHHH
Confidence 3333333444444444444443333555554443 342 1145555555444
No 459
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=28.30 E-value=8.8e+02 Score=27.12 Aligned_cols=43 Identities=9% Similarity=0.054 Sum_probs=25.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 540 EHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNR 582 (699)
Q Consensus 540 ~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~ 582 (699)
+..+|+.=-..|-|.+-+|...|.--..-+--|..++--++.+
T Consensus 273 s~sdLksl~~aLle~indK~~al~Hqr~tNkILg~rv~ELE~k 315 (319)
T PF09789_consen 273 SISDLKSLATALLETINDKNLALQHQRKTNKILGNRVAELEKK 315 (319)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777778888888765554444444444444444333
No 460
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=28.22 E-value=1.3e+03 Score=29.08 Aligned_cols=266 Identities=15% Similarity=0.203 Sum_probs=0.0
Q ss_pred CCCchhhhhHHHHHHHHHhhhhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 005378 244 DPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVY 323 (699)
Q Consensus 244 ~k~~~lqkQLeE~n~~LrsE~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~e 323 (699)
+||.--|.-|+|++-.|..+.. ++.---++..+......+.|.++.+++..+..++..+.--|.--.+-
T Consensus 348 EKI~RYQ~Dl~Elt~RLEEQ~~-----------VVeeA~e~~~e~e~r~e~~E~EvD~lksQLADYQQALD~QQTRAlQY 416 (1480)
T COG3096 348 EKIERYQADLEELTIRLEEQNE-----------VVEEANERQEENEARAEAAELEVDELKSQLADYQQALDVQQTRAIQY 416 (1480)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred HHHHHHHHH-------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh--------
Q 005378 324 KSEVTKVES-------------NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL-------- 382 (699)
Q Consensus 324 Q~er~q~es-------------~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~-------- 382 (699)
|.....++. ...+=++...+.-+.+-..+-.|++.+......-+...-.-+-...=..+
T Consensus 417 QQAi~ALekAk~Lc~l~dLt~~~~e~~~~~f~A~~e~~Te~lL~Le~kms~s~AA~sQF~~AyqLV~~iaGE~~RS~A~~ 496 (1480)
T COG3096 417 QQAIAALERAKELCHLPDLTADSAEEWLETFQAKEEEATEKLLSLEQKMSMAQAAHSQFEQAYQLVVAIAGELARSEAWD 496 (1480)
T ss_pred HHHHHHHHHHHHhcCccccchhhHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhCccchhhHHH
Q ss_pred --------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q 005378 383 --------------TETRMIQALREELASVERRAEEERAAHNATKMAAMER------EVELEHRAAEASMALARIQRIAD 442 (699)
Q Consensus 383 --------------~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~R------e~~LEeenaelseALa~lQrkL~ 442 (699)
...+ .+-++..|+.++++|++++.+-+-... |-.| -.++|...++.+..+..+.-.+.
T Consensus 497 ~A~~llR~~p~q~~~aq~-~~~lr~~l~eLEqr~~qQqsa~~Ll~~-f~kr~~~~l~ae~lE~~~~e~eal~E~ls~~~s 574 (1480)
T COG3096 497 VARELLREGPDQRHLAEQ-VQPLRMRLSELEQRLRQQQSAERLLAD-FCKRQGKNLDAEELEALHQELEALIESLSDSVS 574 (1480)
T ss_pred HHHHHHHhChhhHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHH------HHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHh---HHHHHHhhh
Q 005378 443 ERTAKAGELEQKVAMLEVECATLQQEL------QDMEARLKRGQKKSPEEANQAIQAWQDEVERARQG---QRDAENKLS 513 (699)
Q Consensus 443 EEk~ra~eLeqQ~smLe~dl~qLkQeL------qd~e~~~~r~qqk~~~~~~qei~~leeEl~r~r~~---~~~le~~l~ 513 (699)
+....-..|+++..-|..-+..+-..- ++.-.++..-......+-......++.-+.+.++. ...++.+-.
T Consensus 575 ~~~EqR~~lRq~~e~L~~~~~~~~~~AP~Wl~Aq~ALe~L~eQSGe~~~dSq~V~~~MQ~~L~~Ere~t~~rD~l~~~r~ 654 (1480)
T COG3096 575 NAREQRMALRQEQEQLQSRIQSLMQRAPVWLAAQNALEQLSEQSGEEFTDSQDVTEYMQQLLEREREATVERDELGARKN 654 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHH
Q 005378 514 SLEAEVQKM 522 (699)
Q Consensus 514 ~lE~elqkL 522 (699)
.++.+|.+|
T Consensus 655 ~ld~qI~RL 663 (1480)
T COG3096 655 ALDEEIERL 663 (1480)
T ss_pred HHHHHHHHh
No 461
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=28.05 E-value=7.6e+02 Score=26.32 Aligned_cols=9 Identities=33% Similarity=0.431 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 005378 392 REELASVER 400 (699)
Q Consensus 392 E~eLkslQ~ 400 (699)
+..+..++.
T Consensus 152 ~~~~~~a~~ 160 (334)
T TIGR00998 152 RKALLSAKA 160 (334)
T ss_pred HHHHHHHHH
Confidence 333333333
No 462
>PF03196 DUF261: Protein of unknown function, DUF261; InterPro: IPR004884 This is a group of uncharacterised proteins of unknown function.
Probab=27.98 E-value=54 Score=32.13 Aligned_cols=36 Identities=11% Similarity=0.292 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHH----------------HHhhc---cchhhhhhHHHHHhhccc
Q 005378 659 FYLVFVHLFLMYL----------------LHRLQ---EQADNFAAREVAESMGLT 694 (699)
Q Consensus 659 ~Y~vlLHlWVm~v----------------L~~~~---~~~~~~~~~~~~~~~~~~ 694 (699)
||++|||.|++.+ +..+- +-|+..+|-.+...+|.-
T Consensus 17 CYFLcl~y~~~v~k~~~F~~~~In~~y~rfl~~G~ir~n~YIlnP~~Il~~~GI~ 71 (136)
T PF03196_consen 17 CYFLCLHYYASVVKKIKFDAFDINLNYYRFLGLGYIRSNCYILNPCAILNNYGIR 71 (136)
T ss_pred hHHHHHHHHHHhccccceeehhhhHHHHHHhhCCccccCcEEeCHHHHHHhcCCC
Confidence 8999999999855 22222 226677888888877754
No 463
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=27.85 E-value=2.5e+02 Score=22.50 Aligned_cols=15 Identities=13% Similarity=0.333 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 005378 317 EQELSVYKSEVTKVE 331 (699)
Q Consensus 317 Q~EL~~eQ~er~q~e 331 (699)
+.+...+++.+..+.
T Consensus 4 E~Dy~~LK~~yd~Lk 18 (45)
T PF02183_consen 4 ERDYDALKASYDSLK 18 (45)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 464
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=27.64 E-value=1.2e+03 Score=28.56 Aligned_cols=133 Identities=18% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 005378 290 SENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESN------LAEALAAKNSEIETLVSSIDALKKQAALSE 363 (699)
Q Consensus 290 ke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~------~~eaLaak~sEi~eLe~RL~~LeqeL~r~k 363 (699)
++...++..+..+........+....+...|...+.++...++. .................+|+.+.+.+..++
T Consensus 175 k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~ 254 (670)
T KOG0239|consen 175 KESLKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELEELK 254 (670)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 364 GNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELE 424 (699)
Q Consensus 364 ~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LE 424 (699)
..+..+..+...++......-+. .-.+..+|.++...|-... .-..-+.+...+..+|.
T Consensus 255 ~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~eLk 313 (670)
T KOG0239|consen 255 AELKELNDQVSLLTREVQEALKE-SNTLQSDLESLEENLVEKK-KEKEERRKLHNEILELK 313 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
No 465
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=27.64 E-value=4.6e+02 Score=23.63 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=18.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 305 LSRSYEARIKQLEQELSVYKSEVTKVES 332 (699)
Q Consensus 305 k~~~Lq~kl~qLQ~EL~~eQ~er~q~es 332 (699)
.-..|+..|.+||..|..++.-+..++.
T Consensus 9 ~r~~LeqeV~~Lq~~L~~E~~~r~aLe~ 36 (88)
T PF14389_consen 9 RRSALEQEVAELQKQLQEEQDLRRALEK 36 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446677777777777777766666555
No 466
>PF14282 FlxA: FlxA-like protein
Probab=27.48 E-value=3.7e+02 Score=24.91 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=12.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 305 LSRSYEARIKQLEQELSVYKSEVTK 329 (699)
Q Consensus 305 k~~~Lq~kl~qLQ~EL~~eQ~er~q 329 (699)
+...|+..+..|+..|..++.....
T Consensus 52 q~q~Lq~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 52 QIQLLQAQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555444433
No 467
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=27.39 E-value=1.7e+02 Score=28.54 Aligned_cols=54 Identities=33% Similarity=0.497 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 295 LEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNL 366 (699)
Q Consensus 295 LEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rL 366 (699)
+...+.+.+..++.++.-+..|+.++.. ++++|..|...|+.+...-..++.+|
T Consensus 78 l~a~~~e~qsli~~yE~~~~kLe~e~~~------------------Kdsei~~Lr~~L~~~~~~n~~Lekrl 131 (131)
T PF04859_consen 78 LAAEIQEQQSLIKTYEIVVKKLEAELRA------------------KDSEIDRLREKLDELNRANKSLEKRL 131 (131)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHhhccC
No 468
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=27.09 E-value=2.9e+02 Score=24.68 Aligned_cols=28 Identities=14% Similarity=0.343 Sum_probs=18.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 303 RELSRSYEARIKQLEQELSVYKSEVTKV 330 (699)
Q Consensus 303 qek~~~Lq~kl~qLQ~EL~~eQ~er~q~ 330 (699)
++....+..++..||+.+..++..+...
T Consensus 10 r~dIk~vd~KVdaLq~~V~~l~~~~~~v 37 (75)
T PF05531_consen 10 RQDIKAVDDKVDALQTQVDDLESNLPDV 37 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 5556667777777777776666555443
No 469
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=27.03 E-value=5e+02 Score=26.01 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 341 KNSEIETLVSSIDALKKQAALSEGNLASLQM 371 (699)
Q Consensus 341 k~sEi~eLe~RL~~LeqeL~r~k~rLeelq~ 371 (699)
.+.+++.|+..|...+.+++.++.+.+.++.
T Consensus 159 ~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 159 LSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444444443
No 470
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.96 E-value=1.2e+03 Score=28.36 Aligned_cols=54 Identities=17% Similarity=0.200 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 005378 446 AKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVER 500 (699)
Q Consensus 446 ~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~qqk~~~~~~qei~~leeEl~r 500 (699)
..+..|++++.-..-.|+=|+-+|..+.++-.|.-+....+-+ -|+.|+.|+.-
T Consensus 459 ~~~~sL~~~LeqAsK~CRIL~~RL~K~~R~q~R~~~~~~~d~~-kIK~LE~e~R~ 512 (852)
T KOG4787|consen 459 QKVISLATKLEQANKQCRILNERLNKLHRKQVRDGEIQYSDEL-KIKILELEKRL 512 (852)
T ss_pred HHHHHHHHHHHHHhchhHHHHHHHhHHHHHHHhhhhhccchHH-HHHHHHHHHHH
Confidence 4445555555545555555555554444433332222222222 35677766653
No 471
>PRK04325 hypothetical protein; Provisional
Probab=26.85 E-value=4.1e+02 Score=23.23 Aligned_cols=19 Identities=26% Similarity=0.270 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005378 284 RLQEYKSENAQLEELLVAE 302 (699)
Q Consensus 284 ~~~ELkke~aqLEe~l~el 302 (699)
++.+|-...+-.|..+.+|
T Consensus 10 Ri~~LE~klAfQE~tIe~L 28 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGL 28 (74)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433333
No 472
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=26.53 E-value=7.7e+02 Score=25.88 Aligned_cols=81 Identities=11% Similarity=0.078 Sum_probs=43.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 005378 302 ERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI--DALKKQAALSEGNLASLQMNMESIMRN 379 (699)
Q Consensus 302 lqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL--~~LeqeL~r~k~rLeelq~E~~~L~e~ 379 (699)
|......|..++...+..=..+..-....++--..=...|+.++..-.+.- ...++++...+.++.++-..|++....
T Consensus 62 Le~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~Va~ALF~EWe~EL~~Y~~~sLR~~S~~kL~~tr~~Y~~L~~aM~~Ae~k 141 (201)
T PF11172_consen 62 LEDKYNALNDEYESSEDAAEEVSDRIDAVEDVADALFDEWEQELDQYSNASLRRASEQKLAETRRRYAQLIKAMRRAESK 141 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444444422222334666666555321 445666777888888888777777666
Q ss_pred hhh
Q 005378 380 REL 382 (699)
Q Consensus 380 ~s~ 382 (699)
...
T Consensus 142 m~P 144 (201)
T PF11172_consen 142 MQP 144 (201)
T ss_pred cCh
Confidence 554
No 473
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=26.52 E-value=9e+02 Score=26.67 Aligned_cols=76 Identities=22% Similarity=0.274 Sum_probs=53.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 005378 304 ELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT 383 (699)
Q Consensus 304 ek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~ 383 (699)
+.-+.|+..+...+.++...+..+... .+..+.|..+|++=..++++.+.+++.++.=.=..|..-+.-
T Consensus 105 e~Ekvlk~aIq~i~~~~q~~~~~Lnnv-----------asdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~ 173 (338)
T KOG3647|consen 105 EVEKVLKSAIQAIQVRLQSSRAQLNNV-----------ASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDC 173 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 333455555555555555544444444 444558999999999999999999999999888888888877
Q ss_pred HHHHHHHH
Q 005378 384 ETRMIQAL 391 (699)
Q Consensus 384 Eke~lqSL 391 (699)
|++ |+-+
T Consensus 174 Eee-Lqkl 180 (338)
T KOG3647|consen 174 EEE-LQKL 180 (338)
T ss_pred HHH-HHHH
Confidence 777 4433
No 474
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=26.48 E-value=3.6e+02 Score=23.89 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=23.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 539 EEHMELEKRYRELTDLLYYKQTQLETMA 566 (699)
Q Consensus 539 ~~~~ele~rl~eLte~L~eKQ~qlE~L~ 566 (699)
.....|+..+..|-..+..|-.||-.|.
T Consensus 50 ~~R~~L~~~l~~lv~~mE~K~dQI~~L~ 77 (79)
T PF06657_consen 50 RKRRDLEQELEELVKRMEAKADQIYKLY 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467888899999999999998887763
No 475
>PRK00736 hypothetical protein; Provisional
Probab=26.31 E-value=4.2e+02 Score=22.82 Aligned_cols=13 Identities=31% Similarity=0.322 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 005378 285 LQEYKSENAQLEE 297 (699)
Q Consensus 285 ~~ELkke~aqLEe 297 (699)
+.+|-...+-.|.
T Consensus 7 i~~LE~klafqe~ 19 (68)
T PRK00736 7 LTELEIRVAEQEK 19 (68)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333444443
No 476
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=26.07 E-value=7.2e+02 Score=25.38 Aligned_cols=149 Identities=19% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 005378 275 ARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDA 354 (699)
Q Consensus 275 a~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~ 354 (699)
.....-+-+.-.+.......+|..+..-+..+..++.++.+-+..|......+...+..+. .....|..
T Consensus 49 ~~~ke~~~eakee~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~-----------~~~~~l~~ 117 (201)
T PF12072_consen 49 AIKKEAELEAKEEAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELE-----------KKEEELEQ 117 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 355 LKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMAL 434 (699)
Q Consensus 355 LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseAL 434 (699)
....+...+..+..+..+...-.++++-+-.+ .+.+..|..++..+..+...+=.--.+-+...++-+..+ -++.||
T Consensus 118 ~~~~l~~~~~e~~~~~~~~~~~Le~iAglT~e--EAk~~Ll~~le~e~~~e~a~~ir~~eeeak~~A~~~Ar~-Ii~~Ai 194 (201)
T PF12072_consen 118 RKEELEEREEELEELIEEQQQELEEIAGLTAE--EAKEILLEKLEEEARREAAALIRRIEEEAKEEADKKARR-IIATAI 194 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q ss_pred HHH
Q 005378 435 ARI 437 (699)
Q Consensus 435 a~l 437 (699)
..+
T Consensus 195 QR~ 197 (201)
T PF12072_consen 195 QRY 197 (201)
T ss_pred Hhh
No 477
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=25.95 E-value=8e+02 Score=25.87 Aligned_cols=211 Identities=13% Similarity=0.138 Sum_probs=0.0
Q ss_pred CchhhhhHHHHHHHHHhhhhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005378 246 PTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKS 325 (699)
Q Consensus 246 ~~~lqkQLeE~n~~LrsE~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~ 325 (699)
+..+...++.+...|+.-... ..-.+-.+..+..+...|+.....++.+......+...+.........
T Consensus 19 ~~~l~~~~e~~~~~L~~~~~~-----------~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~ 87 (264)
T PF06008_consen 19 PYKLLSSIEDLTNQLRSYRSK-----------LNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQ 87 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhHhhhhh--HHHHHHHHHHHH
Q 005378 326 EVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEG--------NLASLQMNMESIMRNRELT--ETRMIQALREEL 395 (699)
Q Consensus 326 er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~--------rLeelq~E~~~L~e~~s~~--Eke~lqSLE~eL 395 (699)
.-..+...+. .+...|..+-.++...-. .+..+..+-+++...+-.. ... ....+.++
T Consensus 88 ~a~~L~~~i~-----------~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~f~~~-~~~Ae~El 155 (264)
T PF06008_consen 88 RAQDLEQFIQ-----------NLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRDFTPQ-RQNAEDEL 155 (264)
T ss_pred HHHHHHHHHH-----------HHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhccchhH-HHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 005378 396 ASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEAR 475 (699)
Q Consensus 396 kslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~ 475 (699)
+.++.=|.+-...+..-..+--.....+...-..+..=|..++..+.+-...+.+...-...-...+..+..+.+++...
T Consensus 156 ~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~ 235 (264)
T PF06008_consen 156 KEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQ 235 (264)
T ss_pred HHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhh
Q 005378 476 LKRG 479 (699)
Q Consensus 476 ~~r~ 479 (699)
....
T Consensus 236 ~~~~ 239 (264)
T PF06008_consen 236 QNEV 239 (264)
T ss_pred HHHH
No 478
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=25.92 E-value=3.8e+02 Score=32.05 Aligned_cols=86 Identities=15% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 500 RARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKE 579 (699)
Q Consensus 500 r~r~~~~~le~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~ 579 (699)
..+........++..+|.+|.+|..++.++...+..+.......++ ++.+|.+++.+.+.+++.+..+-..|...|+-+
T Consensus 553 ~~~~~~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~ 631 (638)
T PRK10636 553 ELRTQTQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKA-ELTACLQQQASAKSGLEECEMAWLEAQEQLEQM 631 (638)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 005378 580 MNRLQEV 586 (699)
Q Consensus 580 ~~~a~~~ 586 (699)
...-.++
T Consensus 632 ~~~~~~~ 638 (638)
T PRK10636 632 LLEGQSN 638 (638)
T ss_pred hhhhccC
No 479
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=25.90 E-value=1.1e+03 Score=28.08 Aligned_cols=98 Identities=14% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHH--HHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005378 272 ARLARVCAGLSSRLQEYKSENAQL--EELLVAERELSRSYEA-------RIKQLEQELSVYKSEVTKVESNLAEALAAKN 342 (699)
Q Consensus 272 ~qLa~~~aRLrK~~~ELkke~aqL--Ee~l~elqek~~~Lq~-------kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~ 342 (699)
.....+...+++..+.++....+| ...+.+.+.+...+.. .+.+...++..++.+.......+...-...+
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~ 243 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQ 243 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 343 SEIETLVSSIDALKKQAALSEGNLASL 369 (699)
Q Consensus 343 sEi~eLe~RL~~LeqeL~r~k~rLeel 369 (699)
.....++..+.++.+--+.--.+|...
T Consensus 244 ~~~~~~~~~~~~lk~ap~~D~~~L~~~ 270 (555)
T TIGR03545 244 NDKKQLKADLAELKKAPQNDLKRLENK 270 (555)
T ss_pred HhHHHHHHHHHHHHhccHhHHHHHHHH
No 480
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=25.69 E-value=3.5e+02 Score=29.83 Aligned_cols=60 Identities=13% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 005378 320 LSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (699)
Q Consensus 320 L~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~ 382 (699)
+.+-+..+.-.-..|+.. ++++.+.|.+.+..|..+-.++|.+++.++.|++.+++-+.+
T Consensus 228 ~~rkr~qnk~AAtRYRqK---kRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e 287 (294)
T KOG4571|consen 228 LRRKRQQNKAAATRYRQK---KRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILE 287 (294)
T ss_pred HHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 481
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=25.56 E-value=7e+02 Score=25.12 Aligned_cols=117 Identities=14% Similarity=0.213 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 005378 282 SSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAAL 361 (699)
Q Consensus 282 rK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r 361 (699)
+.++...+..-..+|..-.+-+++....-.++..-...|...+.++..+.+=++ -+++.+..+|+..+.+|+.
T Consensus 30 ~sals~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~R-------kEv~~vRkkID~vNreLkp 102 (159)
T PF04949_consen 30 RSALSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMR-------KEVEMVRKKIDSVNRELKP 102 (159)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchH-------HHHHHHHHHHHHHHHHhhH
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 362 SEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEER 406 (699)
Q Consensus 362 ~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~ 406 (699)
+...-.+.+.+.....+-.++..++ +..|-.+|.+|=...+.-+
T Consensus 103 l~~~cqKKEkEykealea~nEknke-K~~Lv~~L~eLv~eSE~~r 146 (159)
T PF04949_consen 103 LGQSCQKKEKEYKEALEAFNEKNKE-KAQLVTRLMELVSESERLR 146 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
No 482
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=25.56 E-value=1.2e+03 Score=27.92 Aligned_cols=319 Identities=13% Similarity=0.175 Sum_probs=0.0
Q ss_pred hhcCCCCchhhhhHHHHHHHHHhhhhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005378 240 LKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQE 319 (699)
Q Consensus 240 ~k~~~k~~~lqkQLeE~n~~LrsE~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~E 319 (699)
.||..-++..+.||.-+...+..-.+. |+.+...=.+.-.+......--+.+-++.-+....+-.-+..+++.
T Consensus 100 ~kA~~~i~~ie~~l~~iE~~i~~il~~-------l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n~~~~Ge~~~~lEk~ 172 (570)
T COG4477 100 NKAKHEIDDIEQQLTLIEEDIEQILED-------LNELVESEEKNSEEIDHVLELYEELRRDVLANRHQYGEAAPELEKK 172 (570)
T ss_pred HHhhhhHhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q ss_pred HHHHHHHHHHHHH--------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHhhhhh----
Q 005378 320 LSVYKSEVTKVES--------NLAEALAAKNSEIETLVSSIDALKKQAALSE----GNLASLQMNMESIMRNRELT---- 383 (699)
Q Consensus 320 L~~eQ~er~q~es--------~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k----~rLeelq~E~~~L~e~~s~~---- 383 (699)
|......+.+-.. ..++-|...+..+..|..=++..=.-+.... .++.+++.--+.+.+.=-.+
T Consensus 173 Le~i~~~l~qf~~lt~~Gd~ieA~evl~~~ee~~~~L~~~~e~IP~L~~e~~~~lP~ql~~Lk~Gyr~m~~~gY~l~~~~ 252 (570)
T COG4477 173 LENIEEELSQFVELTSSGDYIEAREVLEEAEEHMIALRSIMERIPSLLAELQTELPGQLQDLKAGYRDMKEEGYHLEHVN 252 (570)
T ss_pred HHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHccCCccccc
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 005378 384 -ETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVEC 462 (699)
Q Consensus 384 -Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl 462 (699)
.++ ++.|...|.....-+ ++- -+...+++++.+-+-|..+=..+.-|..--...+....++-..+
T Consensus 253 id~~-~~~L~~~l~~~~~~l---------~~L----eld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l 318 (570)
T COG4477 253 IDSR-LERLKEQLVENSELL---------TQL----ELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYL 318 (570)
T ss_pred HHHH-HHHHHHHHHHHHhHH---------HHh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHH
Q ss_pred HHHHHHHHHHHHHHHhhccC--ChhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhcchhh
Q 005378 463 ATLQQELQDMEARLKRGQKK--SPEEANQAIQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREE 540 (699)
Q Consensus 463 ~qLkQeLqd~e~~~~r~qqk--~~~~~~qei~~leeEl~r~r~~~~~le~~l~~lE~elqkLr~e~~~lq~qleq~~~~~ 540 (699)
.-++.....++...++..+. ..+.-..-+++++.++..+.......-..+..-+.--.-+...+..+..+|.... ..
T Consensus 319 ~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~-~~ 397 (570)
T COG4477 319 EKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIE-DE 397 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHh-hh
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 541 HMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM 580 (699)
Q Consensus 541 ~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~ 580 (699)
...+-..++.|+..=.+=+..++.+.+..+.+...+++.+
T Consensus 398 q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~mek~n 437 (570)
T COG4477 398 QEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYMEKSN 437 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 483
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=25.56 E-value=5.9e+02 Score=24.18 Aligned_cols=94 Identities=17% Similarity=0.288 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------
Q 005378 282 SSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES----------------------------- 332 (699)
Q Consensus 282 rK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es----------------------------- 332 (699)
.-.++.+.....++...+..+......+...+..+...+.. +.....
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~----l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v 80 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKET----LEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIV 80 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEE
Q ss_pred ----------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 005378 333 ----------NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRN 379 (699)
Q Consensus 333 ----------~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~ 379 (699)
++.+++.-.+..+..|...+..+...+......+..+.....++...
T Consensus 81 ~lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 81 SLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred EcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 484
>PF05663 DUF809: Protein of unknown function (DUF809); InterPro: IPR008527 This family consists of several proteins of unknown function Raphanus sativus (Radish) and Brassica napus (Rape).
Probab=25.54 E-value=61 Score=30.28 Aligned_cols=18 Identities=33% Similarity=0.776 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 005378 651 PIARIILLFYLVFVHLFL 668 (699)
Q Consensus 651 P~aRl~~l~Y~vlLHlWV 668 (699)
...-+|++.|+++-|+|+
T Consensus 23 svisffllayllmahiwl 40 (138)
T PF05663_consen 23 SVISFFLLAYLLMAHIWL 40 (138)
T ss_pred ehHHHHHHHHHHHHHHHH
No 485
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=25.52 E-value=1.4e+03 Score=28.72 Aligned_cols=318 Identities=15% Similarity=0.136 Sum_probs=0.0
Q ss_pred hhcCCCCchhhhhHHHHHHHHHhhhhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005378 240 LKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQE 319 (699)
Q Consensus 240 ~k~~~k~~~lqkQLeE~n~~LrsE~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~E 319 (699)
+-||++-+.+..-|.--...+++... -.--.-++-++..+.+.+-+.-+.+..-.....+.+.-.+.+
T Consensus 276 RhANeRR~~~~~al~~R~e~~~sr~~------------~~~~q~r~v~~srE~ael~~~E~~LE~D~Q~A~DhLnLV~~A 343 (1480)
T COG3096 276 RHANERRVHLDQALEFRRELYTSRQQ------------LAAEQYRHVDMSRELAELNGAEGDLEADYQAASDHLNLVQTA 343 (1480)
T ss_pred HhhhhhhccHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHhcccchhhhhHHHHhhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHH
Q 005378 320 LSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVE 399 (699)
Q Consensus 320 L~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ 399 (699)
|.. |+....-++++. +|-.||.+-..-++...+++++.+..-......+..+-.+ ++--+--|..-|
T Consensus 344 lR~-QEKI~RYQ~Dl~-----------Elt~RLEEQ~~VVeeA~e~~~e~e~r~e~~E~EvD~lksQ-LADYQQALD~QQ 410 (1480)
T COG3096 344 LRQ-QEKIERYQADLE-----------ELTIRLEEQNEVVEEANERQEENEARAEAAELEVDELKSQ-LADYQQALDVQQ 410 (1480)
T ss_pred HHH-HHHHHHHHhhHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHH
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 005378 400 RRAEEERAAHNAT-KMAAMEREVELEHRAAEASMAL-ARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLK 477 (699)
Q Consensus 400 ~aLe~E~~aHk~T-k~ea~~Re~~LEeenaelseAL-a~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~ 477 (699)
.+.-+=+.+-.+. |+..+--+.+|-..+ +++. ....-+-++....+.+|+++++|.+....+..+-++-...-+-
T Consensus 411 TRAlQYQQAi~ALekAk~Lc~l~dLt~~~---~e~~~~~f~A~~e~~Te~lL~Le~kms~s~AA~sQF~~AyqLV~~iaG 487 (1480)
T COG3096 411 TRAIQYQQAIAALERAKELCHLPDLTADS---AEEWLETFQAKEEEATEKLLSLEQKMSMAQAAHSQFEQAYQLVVAIAG 487 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccccchhh---HHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhC
Q ss_pred hhccCChhHHHHHH-HHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhc-chhhhhHHHHHHHHHHHHH
Q 005378 478 RGQKKSPEEANQAI-QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHY-SREEHMELEKRYRELTDLL 555 (699)
Q Consensus 478 r~qqk~~~~~~qei-~~leeEl~r~r~~~~~le~~l~~lE~elqkLr~e~~~lq~qleq~-~~~~~~ele~rl~eLte~L 555 (699)
..-.-..-...+++ +.|-..-........ +..+++.+|..+..-+.-.+-+.+=-+.. -+-...+++.--.++.-.+
T Consensus 488 E~~RS~A~~~A~~llR~~p~q~~~aq~~~~-lr~~l~eLEqr~~qQqsa~~Ll~~f~kr~~~~l~ae~lE~~~~e~eal~ 566 (1480)
T COG3096 488 ELARSEAWDVARELLREGPDQRHLAEQVQP-LRMRLSELEQRLRQQQSAERLLADFCKRQGKNLDAEELEALHQELEALI 566 (1480)
T ss_pred ccchhhHHHHHHHHHHhChhhHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 556 YYKQTQLETMASEKAAAEFQLEKEMNRLQEV 586 (699)
Q Consensus 556 ~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~~~ 586 (699)
.+-...+..-...|.+|+.+.|.+.+++.+.
T Consensus 567 E~ls~~~s~~~EqR~~lRq~~e~L~~~~~~~ 597 (1480)
T COG3096 567 ESLSDSVSNAREQRMALRQEQEQLQSRIQSL 597 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 486
>TIGR02559 HrpB7 type III secretion protein HrpB7. This family of genes is found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=25.26 E-value=7.2e+02 Score=25.14 Aligned_cols=134 Identities=20% Similarity=0.164 Sum_probs=0.0
Q ss_pred hhhhchhHHHhhhhcCCCCchhhhhHHHHHHHHHhhhhccchHHHHHHHHHhhhhhHHHH----HHHHHHHHHHHHHHHH
Q 005378 228 VETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQE----YKSENAQLEELLVAER 303 (699)
Q Consensus 228 ~~~~~~~~~~~~~k~~~k~~~lqkQLeE~n~~LrsE~etl~~ke~qLa~~~aRLrK~~~E----Lkke~aqLEe~l~elq 303 (699)
.+++++-|.+..++..+.+.-....|+++...|.........+..+|..-.++|+-..+= ---.+.+...-..-+-
T Consensus 6 ~~~l~~rr~r~~~rL~a~l~a~R~al~~a~a~la~~~~~~~a~~~~l~~~~arid~m~tG~~~f~id~~la~~ryr~vl~ 85 (158)
T TIGR02559 6 WRTLLERKTRRDARLRAELAERRAALQSADRELAEKVSQAEAKADRLHRHAARIDDLATGTASFTIDAYLQCRAYRDVLE 85 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 304 ELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMN 372 (699)
Q Consensus 304 ek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E 372 (699)
+.+..++..+..++..|.. ...+|.+..-.|..+.++|+...+.+.++....+...++
T Consensus 86 ~~~~~aE~~~aaa~~al~~-----------~~~~laa~~r~iaRn~a~id~c~eR~~~l~ra~ea~~ed 143 (158)
T TIGR02559 86 AHLGAAEQAEAAARAALQA-----------LAAALAAKKREIARLDAQIDVCRERAERLRRAGEAAREE 143 (158)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=25.25 E-value=3.8e+02 Score=24.47 Aligned_cols=60 Identities=22% Similarity=0.303 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhh-hc----chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 515 LEAEVQKMRVEMAAMKRDAE-HY----SREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQL 576 (699)
Q Consensus 515 lE~elqkLr~e~~~lq~qle-q~----~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qL 576 (699)
++.+...|+.++.-|+.+++ +| |+-...-|..+++.|..-. .+..-|.+..+.+.|+-+|
T Consensus 22 ~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~~~l 86 (86)
T PF12711_consen 22 LEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELRDQL 86 (86)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHhhC
No 488
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=24.70 E-value=1.2e+03 Score=27.33 Aligned_cols=124 Identities=17% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 005378 276 RVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDAL 355 (699)
Q Consensus 276 ~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~L 355 (699)
++..+|++....+..++..-+.=+..+.+..... ....+..++..+..+=.++-+.+. .+..+-+.+
T Consensus 143 ~l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~--~~~~~~~e~~~l~~eE~~L~q~lk-----------~le~~~~~l 209 (447)
T KOG2751|consen 143 VLLNKLDKEVEDAEDEVDTYKACLQRLEQQNQDV--SEEDLLKELKNLKEEEERLLQQLE-----------ELEKEEAEL 209 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc--chHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 356 KKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATK 413 (699)
Q Consensus 356 eqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk 413 (699)
...+.+.+.+-.++.+++.+.+..-....-+ .=.-+.+|++++...+--+..|.-.+
T Consensus 210 ~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q-~~~~~del~Sle~q~~~s~~qldkL~ 266 (447)
T KOG2751|consen 210 DHQLKELEFKAERLNEEEDQYWREYNNFQRQ-LIEHQDELDSLEAQIEYSQAQLDKLR 266 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcccchHHHHHHHHHHHHHHHHHHH
No 489
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=24.67 E-value=1e+03 Score=26.73 Aligned_cols=127 Identities=18% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHH-HHHHHHHHHHHHhHHHHHHhhhhHHHHHHHH
Q 005378 444 RTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAI-QAWQDEVERARQGQRDAENKLSSLEAEVQKM 522 (699)
Q Consensus 444 Ek~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~qqk~~~~~~qei-~~leeEl~r~r~~~~~le~~l~~lE~elqkL 522 (699)
++.-+.-.+..+...+..+......|.+|..+.--.--+..++..-.+ .+++.|+. ..+.++..+
T Consensus 177 r~dt~r~Ae~eV~~~eerv~kAs~~L~~yr~kngvfdp~~qaevq~~Lvs~Le~eL~--------------~iqaqL~tv 242 (372)
T COG3524 177 RRDTVRFAEEEVQKAEERVKKASNDLTDYRIKNGVFDPKAQAEVQMSLVSKLEDELI--------------VIQAQLDTV 242 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCccChhhhhHHHHHHHHHHHHHHH--------------HHHHHHHHH
Q ss_pred HHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 523 RVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQ----------------TQLETMASEKAAAEFQLEKEMNRLQEV 586 (699)
Q Consensus 523 r~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ----------------~qlE~L~~Er~sL~~qLE~~~~~a~~~ 586 (699)
+..| .+-++.--.|+.|+.+|+.+|.+-- +..++|.-|+.--+.++..+.+.+.++
T Consensus 243 ks~m--------~~~nPqi~~LkarieSlrkql~qe~q~isag~~~~sl~~qaAefq~l~lE~~fAekay~AAl~SlEsA 314 (372)
T COG3524 243 KSVM--------NPENPQIPGLKARIESLRKQLLQEKQAISAGGSSQSLSNQAAEFQRLYLENTFAEKAYAAALTSLESA 314 (372)
T ss_pred HHhc--------CCCCCcchhHHHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhh
Q 005378 587 QSEAER 592 (699)
Q Consensus 587 ~~~~~~ 592 (699)
+.++.|
T Consensus 315 rieAdr 320 (372)
T COG3524 315 RIEADR 320 (372)
T ss_pred hhhhhh
No 490
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=24.61 E-value=5.3e+02 Score=23.39 Aligned_cols=95 Identities=16% Similarity=0.108 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 005378 281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAA 360 (699)
Q Consensus 281 LrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~ 360 (699)
|..-+..+......+-..+.........++.++..|..+.......++....... .|...+-.|...+.
T Consensus 1 L~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d-----------~l~~e~k~L~~~~~ 69 (96)
T PF08647_consen 1 LQTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKD-----------ALDNEMKKLNTQLS 69 (96)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhHHH
Q 005378 361 LSEGNLASLQMNMESIMRNRELTETR 386 (699)
Q Consensus 361 r~k~rLeelq~E~~~L~e~~s~~Eke 386 (699)
....-.+.++.--..+...+...+++
T Consensus 70 Ks~~~i~~L~~~E~~~~~~l~~~Eke 95 (96)
T PF08647_consen 70 KSSELIEQLKETEKEFVRKLKNLEKE 95 (96)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhcc
No 491
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=24.39 E-value=5.6e+02 Score=24.51 Aligned_cols=63 Identities=13% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 308 SYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQ 370 (699)
Q Consensus 308 ~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq 370 (699)
.+-.++..|++++.++++...+-++....-=+..-..+.+|..|+..++..+..++...+++.
T Consensus 5 ~~~~q~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVsemK 67 (112)
T PF07439_consen 5 GLHQQLGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVSEMK 67 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhcc
No 492
>PRK11546 zraP zinc resistance protein; Provisional
Probab=24.30 E-value=6.5e+02 Score=25.00 Aligned_cols=63 Identities=19% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 005378 317 EQELSVYKSEVTKVESNLAEALAAKNSEIETLVS-------SIDALKKQAALSEGNLASLQMNMESIMRN 379 (699)
Q Consensus 317 Q~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~-------RL~~LeqeL~r~k~rLeelq~E~~~L~e~ 379 (699)
|..+..+..++...-..++++|-++..|+..|.. +|..+.+++..++..|.+.....+--..+
T Consensus 49 Qa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~~~k 118 (143)
T PRK11546 49 QAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDIAMAE 118 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>PRK11546 zraP zinc resistance protein; Provisional
Probab=24.15 E-value=6.7e+02 Score=24.91 Aligned_cols=68 Identities=12% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 343 SEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNA 411 (699)
Q Consensus 343 sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~ 411 (699)
++.+.++.=.+.-..+...++..+-..+.|+..|+..-....+. +..+..||.+|+..|..++..+..
T Consensus 47 EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~k-I~aL~kEI~~Lr~kL~e~r~~~~~ 114 (143)
T PRK11546 47 EQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSK-INAVAKEMENLRQSLDELRVKRDI 114 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHH
No 494
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=24.02 E-value=5e+02 Score=22.87 Aligned_cols=82 Identities=20% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-------------------HHHHHHHHHHHHHHHH
Q 005378 300 VAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSE-------------------IETLVSSIDALKKQAA 360 (699)
Q Consensus 300 ~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sE-------------------i~eLe~RL~~LeqeL~ 360 (699)
.+.......+..++..+...+..+...+...+. ....|...... +..|..++..++.++.
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~-~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~ 79 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLRELEL-TLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIK 79 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhHhhhh
Q 005378 361 LSEGNLASLQMNMESIMRNREL 382 (699)
Q Consensus 361 r~k~rLeelq~E~~~L~e~~s~ 382 (699)
.++..+..+...+..+...+..
T Consensus 80 ~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 80 KLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 495
>PLN02678 seryl-tRNA synthetase
Probab=23.95 E-value=5.2e+02 Score=30.01 Aligned_cols=76 Identities=25% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 496 DEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQ 575 (699)
Q Consensus 496 eEl~r~r~~~~~le~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~q 575 (699)
+++..+-...+.+..++..+..+...+.++|..++.. ......+..++++|++++.....++..+..+...+...
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~-----~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~ 107 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIA-----KEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKT 107 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred H
Q 005378 576 L 576 (699)
Q Consensus 576 L 576 (699)
|
T Consensus 108 i 108 (448)
T PLN02678 108 I 108 (448)
T ss_pred C
No 496
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.42 E-value=2.6e+02 Score=26.88 Aligned_cols=56 Identities=20% Similarity=0.377 Sum_probs=0.0
Q ss_pred cchhhhHHHHHHHhHHhhhhHhHhHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005378 621 HIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQE 677 (699)
Q Consensus 621 ~~~~~~rrvk~A~~~lDs~slr~g~fLRRyP~aRl~~l~Y~vlLHlWVm~vL~~~~~ 677 (699)
.+...+.++...++.+-..+.++-+-+| +--.++.+++-+|++=|.+++|++.|..
T Consensus 61 ~L~drad~L~~~as~F~~~A~klkrk~w-Wkn~Km~~il~~v~~i~l~iiii~~~~~ 116 (116)
T KOG0860|consen 61 ELDDRADQLQAGASQFEKTAVKLKRKMW-WKNCKMRIILGLVIIILLVVIIIYIFLW 116 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 497
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=23.39 E-value=1.1e+03 Score=26.74 Aligned_cols=225 Identities=22% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 005378 276 RVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDAL 355 (699)
Q Consensus 276 ~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~L 355 (699)
+..+.+.+.+ ---.-..+++......+.....+..++..|+..+.........-..... +.............+..+
T Consensus 168 ~~aa~v~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lr~~~~~ae~~~~~~~~~~~--l~~~~~~~~~~~~~~~~l 244 (458)
T COG3206 168 KLAAKLANAL-AQAYLADQLEAQLEAFRRASDSLDERLEELRARLQEAEAQVEDFRAQHG--LTDAARGQLLSEQQLSAL 244 (458)
T ss_pred HHHHHHHHHH-HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CcccccchhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 356 KKQAALSEGNLASLQMNMESIMRNREL----------TETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEH 425 (699)
Q Consensus 356 eqeL~r~k~rLeelq~E~~~L~e~~s~----------~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEe 425 (699)
+.++...+.+..........+...... .+...++.|+.+..++...+......+...-.++..=...+.+
T Consensus 245 n~ql~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~s~~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~ 324 (458)
T COG3206 245 NTQLQSARARLAQAEARLASLLQLLPLGREAAALREVLESPTIQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAE 324 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHhccHHHHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHhH
Q 005378 426 RAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQAWQDEVERARQGQ 505 (699)
Q Consensus 426 enaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~qqk~~~~~~qei~~leeEl~r~r~~~ 505 (699)
-+ ...-.++.+.+......+.-++++...|......++.++ ............|+.+++..+...
T Consensus 325 ~~---~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~------------~~~~~~~~~l~~L~Re~~~~r~~y 389 (458)
T COG3206 325 LR---QQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRL------------SKLPKLQVQLRELEREAEAARSLY 389 (458)
T ss_pred HH---HHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHH------------hhchHhhhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhhHHHH
Q 005378 506 RDAENKLSSLEAE 518 (699)
Q Consensus 506 ~~le~~l~~lE~e 518 (699)
+.+-.+...+...
T Consensus 390 e~lL~r~qe~~~~ 402 (458)
T COG3206 390 ETLLQRYQELSIQ 402 (458)
T ss_pred HHHHHHHHHHHHh
No 498
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=23.25 E-value=4.6e+02 Score=22.15 Aligned_cols=58 Identities=17% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 312 RIKQLEQELSVYKSEVTKVESNLAEALAAKNSE-IETLVSSIDALKKQAALSEGNLASLQ 370 (699)
Q Consensus 312 kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sE-i~eLe~RL~~LeqeL~r~k~rLeelq 370 (699)
++..|+..|..+..-+.=.+. +...++..+.. +......|..+...+..++..|.+++
T Consensus 2 ~i~~L~~~i~~E~ki~~Gae~-m~~~~~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~ 60 (70)
T PF02185_consen 2 RIEELQKKIDKELKIKEGAEN-MLQAYSTDKKKVLSEAESQLRESNQKIELLREQLEKLQ 60 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHCCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=23.08 E-value=5.3e+02 Score=22.84 Aligned_cols=64 Identities=14% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 300 VAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASL 369 (699)
Q Consensus 300 ~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeel 369 (699)
..|.+.+..|++++..+.-++..++..+.+.......+ .+.+|...|..+-..++.--.++.++
T Consensus 13 ~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~------~R~~L~~~l~~lv~~mE~K~dQI~~L 76 (79)
T PF06657_consen 13 EALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRR------KRRDLEQELEELVKRMEAKADQIYKL 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChH------HHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=23.06 E-value=6.9e+02 Score=25.35 Aligned_cols=65 Identities=22% Similarity=0.338 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 005378 284 RLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQA 359 (699)
Q Consensus 284 ~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL 359 (699)
...........+...+..++.-...|+.++..|+.++..+.......+++|. .|-.=|+++...+
T Consensus 91 ~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~-----------~L~~Im~RARkl~ 155 (161)
T TIGR02894 91 NLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQ-----------TLIDIMDRARKLA 155 (161)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Done!