Query 005378
Match_columns 699
No_of_seqs 165 out of 189
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 23:39:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005378.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005378hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o0z_A RHO-associated protein 99.9 5.2E-23 1.8E-27 198.4 21.3 159 241-415 3-165 (168)
2 1c1g_A Tropomyosin; contractIl 99.2 4E-06 1.4E-10 81.6 43.4 35 346-380 72-106 (284)
3 1c1g_A Tropomyosin; contractIl 99.1 1.2E-05 4.2E-10 78.2 43.4 32 548-579 246-277 (284)
4 1i84_S Smooth muscle myosin he 98.8 7.4E-09 2.5E-13 125.9 10.7 43 542-584 1119-1161(1184)
5 1i84_S Smooth muscle myosin he 98.7 3.9E-08 1.3E-12 119.6 10.7 98 281-382 862-959 (1184)
6 2v71_A Nuclear distribution pr 97.5 0.024 8.1E-07 56.1 23.2 107 296-403 9-119 (189)
7 3o0z_A RHO-associated protein 97.3 0.052 1.8E-06 52.8 21.6 94 374-471 51-154 (168)
8 3na7_A HP0958; flagellar bioge 97.1 0.17 5.7E-06 51.6 24.3 22 422-443 140-161 (256)
9 3na7_A HP0958; flagellar bioge 96.9 0.19 6.5E-06 51.2 23.1 29 343-371 53-81 (256)
10 2dfs_A Myosin-5A; myosin-V, in 96.6 0.065 2.2E-06 65.1 19.7 21 453-473 1023-1043(1080)
11 3vkg_A Dynein heavy chain, cyt 96.6 0.46 1.6E-05 63.5 28.4 53 428-480 2017-2069(3245)
12 2dfs_A Myosin-5A; myosin-V, in 96.5 0.074 2.5E-06 64.6 19.3 51 275-325 920-974 (1080)
13 3vkg_A Dynein heavy chain, cyt 96.0 3.1 0.00011 56.0 31.2 89 491-587 2016-2104(3245)
14 2ocy_A RAB guanine nucleotide 95.3 1.1 3.8E-05 43.0 17.6 68 307-377 75-142 (154)
15 2b9c_A Striated-muscle alpha t 95.0 0.46 1.6E-05 45.2 14.1 60 495-555 86-145 (147)
16 2fxo_A Myosin heavy chain, car 94.9 2.3 7.8E-05 39.2 19.0 102 281-386 18-119 (129)
17 2fxo_A Myosin heavy chain, car 94.4 3 0.0001 38.4 19.2 59 415-473 66-124 (129)
18 2v71_A Nuclear distribution pr 94.0 5.2 0.00018 39.5 25.3 116 304-434 10-125 (189)
19 2ocy_A RAB guanine nucleotide 93.9 4.7 0.00016 38.7 19.3 91 307-402 54-145 (154)
20 1x79_B RAB GTPase binding effe 93.5 1 3.5E-05 41.1 12.3 94 273-380 10-107 (112)
21 3oja_B Anopheles plasmodium-re 93.4 0.75 2.6E-05 51.1 13.8 38 432-469 544-581 (597)
22 3oja_B Anopheles plasmodium-re 93.3 1.7 5.7E-05 48.3 16.5 48 355-403 507-554 (597)
23 3u1c_A Tropomyosin alpha-1 cha 92.8 4.5 0.00015 35.9 15.3 21 347-367 48-68 (101)
24 2e7s_A RAB guanine nucleotide 92.4 0.61 2.1E-05 43.9 9.4 62 307-371 63-124 (135)
25 2v66_B Nuclear distribution pr 92.3 6.5 0.00022 35.8 16.5 62 251-322 6-67 (111)
26 3u59_A Tropomyosin beta chain; 91.2 7.2 0.00025 34.4 14.7 25 347-371 48-72 (101)
27 2e7s_A RAB guanine nucleotide 91.0 0.46 1.6E-05 44.7 7.0 91 307-402 42-133 (135)
28 1x79_B RAB GTPase binding effe 90.7 4.5 0.00015 36.9 13.0 83 304-386 6-88 (112)
29 2v66_B Nuclear distribution pr 90.5 10 0.00034 34.6 15.3 48 284-331 4-55 (111)
30 2efr_A General control protein 90.3 13 0.00045 35.6 24.0 30 348-377 26-55 (155)
31 2efr_A General control protein 89.7 15 0.0005 35.3 23.3 41 430-470 75-115 (155)
32 2eqb_B RAB guanine nucleotide 89.5 7.5 0.00026 34.6 13.1 33 303-335 39-71 (97)
33 3u1c_A Tropomyosin alpha-1 cha 88.3 13 0.00045 32.9 15.4 51 348-399 7-57 (101)
34 2jee_A YIIU; FTSZ, septum, coi 86.5 7.5 0.00026 33.6 10.9 71 506-584 9-79 (81)
35 3mq7_A Bone marrow stromal ant 85.6 22 0.00074 32.7 14.9 90 284-380 19-108 (121)
36 4gkw_A Spindle assembly abnorm 84.8 26 0.00089 32.9 23.3 139 306-473 13-160 (167)
37 1ic2_A Tropomyosin alpha chain 84.2 12 0.00042 31.6 11.2 51 351-402 21-71 (81)
38 3ol1_A Vimentin; structural ge 83.7 20 0.00067 32.6 13.1 33 446-478 27-59 (119)
39 3u59_A Tropomyosin beta chain; 83.2 23 0.0008 31.1 15.4 54 348-402 7-60 (101)
40 3hnw_A Uncharacterized protein 82.8 11 0.00037 35.3 11.3 18 272-289 28-45 (138)
41 2b9c_A Striated-muscle alpha t 82.3 13 0.00044 35.2 11.6 11 312-322 53-63 (147)
42 2v4h_A NF-kappa-B essential mo 81.3 31 0.0011 31.3 13.0 73 506-583 34-106 (110)
43 3mq9_A Bone marrow stromal ant 81.0 35 0.0012 36.7 16.2 25 351-375 444-468 (471)
44 1ic2_A Tropomyosin alpha chain 80.9 22 0.00075 30.0 11.5 38 340-377 38-75 (81)
45 3iox_A AGI/II, PA; alpha helix 80.0 38 0.0013 37.9 15.9 40 308-347 6-45 (497)
46 3q8t_A Beclin-1; autophagy, AT 80.0 31 0.0011 30.3 12.8 70 510-580 25-94 (96)
47 3tnu_B Keratin, type II cytosk 78.7 39 0.0013 30.8 13.6 15 284-298 37-51 (129)
48 3a7p_A Autophagy protein 16; c 78.3 23 0.00079 33.8 11.8 65 312-380 69-133 (152)
49 1d7m_A Cortexillin I; coiled-c 77.0 38 0.0013 29.8 16.0 30 347-376 71-100 (101)
50 3cve_A Homer protein homolog 1 76.9 26 0.00088 29.6 10.4 31 347-377 18-48 (72)
51 2eqb_B RAB guanine nucleotide 76.8 40 0.0014 30.0 14.3 73 306-382 21-94 (97)
52 3tnu_A Keratin, type I cytoske 76.1 40 0.0014 30.8 12.7 13 285-297 40-52 (131)
53 3a7p_A Autophagy protein 16; c 75.8 22 0.00074 34.1 10.8 48 541-588 77-124 (152)
54 3q8t_A Beclin-1; autophagy, AT 75.5 42 0.0014 29.5 14.5 31 342-372 31-61 (96)
55 3ghg_A Fibrinogen alpha chain; 75.4 27 0.00091 39.4 13.0 15 643-657 487-501 (562)
56 3ghg_A Fibrinogen alpha chain; 75.2 46 0.0016 37.5 14.8 37 345-381 119-155 (562)
57 1l8d_A DNA double-strand break 74.6 43 0.0015 29.2 13.0 40 284-323 4-43 (112)
58 1m1j_B Fibrinogen beta chain; 73.2 1.1E+02 0.0037 34.1 17.3 40 281-320 98-137 (464)
59 3s4r_A Vimentin; alpha-helix, 73.1 27 0.00094 30.5 10.2 58 512-579 25-82 (93)
60 2v4h_A NF-kappa-B essential mo 72.9 54 0.0018 29.8 12.1 19 308-326 66-84 (110)
61 3cvf_A Homer-3, homer protein 72.6 18 0.00062 31.0 8.6 30 347-376 24-53 (79)
62 1wt6_A Myotonin-protein kinase 72.4 18 0.00062 31.2 8.5 59 255-324 14-72 (81)
63 2jee_A YIIU; FTSZ, septum, coi 72.0 30 0.001 29.9 9.8 43 276-318 20-62 (81)
64 2no2_A HIP-I, huntingtin-inter 71.2 58 0.002 29.2 15.8 33 348-380 59-91 (107)
65 3cvf_A Homer-3, homer protein 70.7 20 0.00068 30.8 8.4 36 300-335 16-51 (79)
66 3mq9_A Bone marrow stromal ant 69.8 94 0.0032 33.4 15.8 18 347-364 447-464 (471)
67 2w83_C C-JUN-amino-terminal ki 69.1 16 0.00054 31.2 7.3 53 323-375 24-76 (77)
68 3s4r_A Vimentin; alpha-helix, 68.8 59 0.002 28.3 13.3 68 305-378 24-91 (93)
69 3oja_A Leucine-rich immune mol 68.6 68 0.0023 34.6 14.4 40 347-386 425-464 (487)
70 3oja_A Leucine-rich immune mol 68.4 1.3E+02 0.0046 32.3 19.0 56 396-451 420-475 (487)
71 3cve_A Homer protein homolog 1 66.4 52 0.0018 27.7 9.9 37 299-335 9-45 (72)
72 3i00_A HIP-I, huntingtin-inter 66.0 40 0.0014 30.9 10.1 41 541-581 42-82 (120)
73 3iyk_A VP5; icosahedral virus; 64.5 1.9E+02 0.0064 32.5 20.2 79 342-423 145-223 (526)
74 1l8d_A DNA double-strand break 63.1 77 0.0026 27.6 13.0 36 293-328 6-41 (112)
75 2i1j_A Moesin; FERM, coiled-co 63.0 16 0.00056 41.4 8.4 24 446-469 433-456 (575)
76 2b5u_A Colicin E3; high resolu 62.9 2E+02 0.0068 32.4 19.1 31 343-373 349-379 (551)
77 3ol1_A Vimentin; structural ge 62.8 89 0.003 28.2 15.9 30 280-309 24-53 (119)
78 3hnw_A Uncharacterized protein 62.4 1E+02 0.0034 28.7 13.2 61 341-402 73-133 (138)
79 1deq_A Fibrinogen (alpha chain 62.4 1.3E+02 0.0044 32.7 14.5 17 249-265 54-70 (390)
80 1deq_A Fibrinogen (alpha chain 62.1 1.5E+02 0.0053 32.1 15.0 46 431-476 112-157 (390)
81 1d7m_A Cortexillin I; coiled-c 62.0 83 0.0028 27.7 14.9 25 412-436 68-92 (101)
82 3swk_A Vimentin; cytoskeleton, 61.9 40 0.0014 29.0 8.8 16 541-556 65-80 (86)
83 1m1j_C Fibrinogen gamma chain; 61.5 65 0.0022 35.2 12.4 44 429-472 24-67 (409)
84 3i00_A HIP-I, huntingtin-inter 60.9 64 0.0022 29.5 10.4 63 313-382 17-79 (120)
85 1ik9_A DNA repair protein XRCC 60.8 83 0.0029 31.3 12.1 56 350-405 146-201 (213)
86 1wt6_A Myotonin-protein kinase 58.0 83 0.0028 27.1 9.8 20 349-368 51-70 (81)
87 3s84_A Apolipoprotein A-IV; fo 57.7 1.7E+02 0.0059 30.0 32.7 9 462-470 178-186 (273)
88 1t3j_A Mitofusin 1; coiled coi 53.4 45 0.0015 29.6 7.7 65 248-326 29-93 (96)
89 2xdj_A Uncharacterized protein 52.7 1.1E+02 0.0038 26.2 10.1 32 347-378 24-55 (83)
90 2zqm_A Prefoldin beta subunit 51.1 1.2E+02 0.0042 26.3 13.6 23 348-370 82-104 (117)
91 2lw1_A ABC transporter ATP-bin 50.3 1.1E+02 0.0037 26.1 9.6 57 512-570 24-80 (89)
92 3iox_A AGI/II, PA; alpha helix 49.8 3.2E+02 0.011 30.7 15.4 27 334-360 71-97 (497)
93 1wle_A Seryl-tRNA synthetase; 49.4 1.1E+02 0.0037 34.3 11.9 71 309-379 75-152 (501)
94 3cl3_D NF-kappa-B essential mo 49.2 31 0.0011 32.1 6.2 96 354-471 6-101 (130)
95 2xdj_A Uncharacterized protein 49.1 1.3E+02 0.0044 25.9 10.3 62 419-480 7-68 (83)
96 3mq7_A Bone marrow stromal ant 49.0 1.6E+02 0.0055 27.0 13.8 30 351-380 72-101 (121)
97 3jsv_C NF-kappa-B essential mo 48.9 1.4E+02 0.0049 26.4 10.1 24 306-329 42-65 (94)
98 2i1j_A Moesin; FERM, coiled-co 47.5 20 0.00069 40.6 5.8 53 346-399 366-418 (575)
99 1gk4_A Vimentin; intermediate 46.0 1.4E+02 0.0047 25.3 11.8 49 286-334 4-56 (84)
100 3tul_A Cell invasion protein S 45.4 2.1E+02 0.0072 27.3 13.7 105 308-412 24-133 (158)
101 3nmd_A CGMP dependent protein 45.0 75 0.0026 26.9 7.4 23 345-367 42-64 (72)
102 3swy_A Cyclic nucleotide-gated 44.6 80 0.0027 24.5 6.9 29 304-332 5-33 (46)
103 3nmd_A CGMP dependent protein 43.4 67 0.0023 27.1 6.9 40 337-376 27-66 (72)
104 3he5_B Synzip2; heterodimeric 41.5 90 0.0031 23.9 6.6 42 279-320 6-47 (52)
105 3jsv_C NF-kappa-B essential mo 41.0 1.9E+02 0.0065 25.6 10.5 37 491-527 49-85 (94)
106 3bas_A Myosin heavy chain, str 40.8 1.7E+02 0.0059 25.0 11.8 29 555-583 58-86 (89)
107 3iv1_A Tumor susceptibility ge 40.5 1.4E+02 0.0049 25.5 8.5 16 251-266 14-29 (78)
108 2oto_A M protein; helical coil 40.1 2.3E+02 0.0079 26.3 18.9 10 256-265 30-39 (155)
109 3swk_A Vimentin; cytoskeleton, 39.4 1.8E+02 0.0062 24.9 11.2 28 280-307 4-31 (86)
110 2w83_C C-JUN-amino-terminal ki 38.9 1.8E+02 0.0063 24.8 9.4 14 347-360 62-75 (77)
111 3qne_A Seryl-tRNA synthetase, 38.7 1.2E+02 0.0042 33.8 10.1 71 308-379 37-107 (485)
112 3c9i_A Tail needle protein GP2 38.4 1.9E+02 0.0065 29.0 10.3 64 338-402 86-149 (242)
113 1m1j_C Fibrinogen gamma chain; 38.3 92 0.0031 34.0 8.9 17 286-302 34-50 (409)
114 3swf_A CGMP-gated cation chann 38.0 1.5E+02 0.0052 25.1 8.2 30 303-332 6-35 (74)
115 2dq0_A Seryl-tRNA synthetase; 37.6 1.1E+02 0.0037 33.7 9.5 73 307-380 34-106 (455)
116 2ke4_A CDC42-interacting prote 37.0 2.1E+02 0.0071 25.2 9.4 28 305-332 16-43 (98)
117 1cxz_B Protein (PKN); protein- 35.6 94 0.0032 27.0 6.8 62 248-313 18-79 (86)
118 1ses_A Seryl-tRNA synthetase; 35.5 1.1E+02 0.0036 33.4 8.9 68 308-378 32-99 (421)
119 1fxk_C Protein (prefoldin); ar 34.9 2.5E+02 0.0085 25.1 13.4 26 347-372 99-124 (133)
120 3swy_A Cyclic nucleotide-gated 33.7 1.6E+02 0.0056 22.7 7.2 38 388-425 7-44 (46)
121 3cl3_D NF-kappa-B essential mo 33.7 1.2E+02 0.004 28.3 7.4 46 279-324 51-96 (130)
122 2no2_A HIP-I, huntingtin-inter 31.7 2.8E+02 0.0095 24.7 16.2 54 324-378 50-103 (107)
123 3m9b_A Proteasome-associated A 30.5 49 0.0017 34.0 4.9 69 516-586 23-94 (251)
124 3m91_A Proteasome-associated A 30.0 1.6E+02 0.0056 23.1 6.7 34 343-376 16-49 (51)
125 3m91_A Proteasome-associated A 29.8 1.3E+02 0.0045 23.7 6.1 22 284-305 17-38 (51)
126 1go4_E MAD1 (mitotic arrest de 29.7 2.4E+02 0.0081 25.2 8.5 32 447-478 13-44 (100)
127 3a7o_A Autophagy protein 16; c 29.6 1.9E+02 0.0065 24.4 7.3 48 334-381 23-70 (75)
128 2pms_C Pneumococcal surface pr 28.8 1.7E+02 0.0058 27.1 7.7 76 280-370 10-88 (125)
129 2w6a_A ARF GTPase-activating p 28.5 2.1E+02 0.0073 23.3 7.2 44 334-377 18-61 (63)
130 4dk0_A Putative MACA; alpha-ha 28.4 80 0.0027 32.5 6.3 7 243-249 57-63 (369)
131 3q0x_A Centriole protein; cent 28.3 1.4E+02 0.0047 30.2 7.6 44 544-587 169-212 (228)
132 3u06_A Protein claret segregat 27.3 1.5E+02 0.0053 32.1 8.4 40 290-329 3-42 (412)
133 4h22_A Leucine-rich repeat fli 27.3 3.4E+02 0.012 24.3 10.0 80 364-469 2-81 (103)
134 1m1j_A Fibrinogen alpha subuni 27.2 6.9E+02 0.024 27.8 15.5 17 388-404 141-157 (491)
135 1fxk_A Prefoldin; archaeal pro 26.3 3E+02 0.01 23.4 10.7 34 346-379 68-101 (107)
136 3qh9_A Liprin-beta-2; coiled-c 26.1 3.2E+02 0.011 23.6 10.5 55 294-352 23-77 (81)
137 3trt_A Vimentin; cytoskeleton, 25.9 2.7E+02 0.0092 22.7 11.6 70 281-363 7-76 (77)
138 2ww9_C Protein transport prote 25.4 21 0.00072 31.2 1.0 15 655-669 69-83 (87)
139 2zqm_A Prefoldin beta subunit 25.3 3.3E+02 0.011 23.5 12.8 37 345-381 72-108 (117)
140 1ci6_A Transcription factor AT 25.3 2.6E+02 0.009 22.4 7.9 28 285-312 25-52 (63)
141 3swf_A CGMP-gated cation chann 25.1 2.1E+02 0.0072 24.3 6.9 39 388-426 9-47 (74)
142 2wwb_C SEC61BETA, protein tran 25.0 16 0.00053 32.5 0.1 14 655-668 78-91 (96)
143 1f5n_A Interferon-induced guan 25.0 7.9E+02 0.027 27.8 23.2 180 355-554 381-582 (592)
144 2k48_A Nucleoprotein; viral pr 24.8 3.5E+02 0.012 24.3 8.7 16 388-403 84-99 (107)
145 3efg_A Protein SLYX homolog; x 24.4 1.3E+02 0.0044 25.5 5.6 40 281-320 12-51 (78)
146 2w6a_A ARF GTPase-activating p 24.3 2.9E+02 0.01 22.5 7.3 15 306-320 43-57 (63)
147 2oqq_A Transcription factor HY 24.2 2.4E+02 0.0082 21.5 6.3 32 293-324 6-37 (42)
148 2oqq_A Transcription factor HY 24.0 1.8E+02 0.0063 22.1 5.7 32 346-377 6-37 (42)
149 3m9b_A Proteasome-associated A 22.8 74 0.0025 32.7 4.5 41 338-378 56-96 (251)
150 2oto_A M protein; helical coil 22.5 4.6E+02 0.016 24.2 17.6 9 258-266 25-33 (155)
151 3lay_A Zinc resistance-associa 22.3 4.6E+02 0.016 25.3 9.8 46 362-408 90-135 (175)
152 3ghg_C Fibrinogen gamma chain; 21.9 4.2E+02 0.014 28.9 10.5 31 281-311 36-66 (411)
153 1ci6_A Transcription factor AT 21.7 2.5E+02 0.0085 22.6 6.7 38 341-378 21-58 (63)
154 2w6b_A RHO guanine nucleotide 21.5 3E+02 0.01 22.1 6.7 33 303-335 16-48 (56)
155 3ni0_A Bone marrow stromal ant 21.2 4.3E+02 0.015 23.4 13.3 49 429-477 43-91 (99)
156 3lss_A Seryl-tRNA synthetase; 20.3 4.7E+02 0.016 29.0 10.7 23 310-332 43-65 (484)
157 3arc_L Photosystem II reaction 20.1 70 0.0024 23.6 2.6 16 659-674 17-32 (37)
No 1
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=99.91 E-value=5.2e-23 Score=198.44 Aligned_cols=159 Identities=23% Similarity=0.240 Sum_probs=141.6
Q ss_pred hcCCCCchhhhhHHHHHHHHHhhhhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005378 241 KADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQEL 320 (699)
Q Consensus 241 k~~~k~~~lqkQLeE~n~~LrsE~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL 320 (699)
+.|+|+++|++||+|+|.+||+|+++ ++||||+++|+.+..+++|..+++++++++.|++....|+.++
T Consensus 3 ~~neKi~~LekQL~E~n~kLk~EsE~-----------~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~ 71 (168)
T 3o0z_A 3 LANEKLSQLQKQLEEANDLLRTESDT-----------AVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDY 71 (168)
T ss_dssp -------CTHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHhHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999996 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHH----HHHH
Q 005378 321 SVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR----EELA 396 (699)
Q Consensus 321 ~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE----~eLk 396 (699)
..+|+.+.+..++ +.+ +...+.+|++|+.+|..++++++.+++++..+++.|.++++++||+ +++++ ++|+
T Consensus 72 ~~LQa~L~qEr~~-r~q---~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe-~a~~eid~~~eLK 146 (168)
T 3o0z_A 72 YQLQAILEAERRD-RGH---DSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKE-KNNLEIDLNYKLK 146 (168)
T ss_dssp HHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHH
Confidence 9999999998773 323 7788899999999999999999999999999999999999999999 99999 8899
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005378 397 SVERRAEEERAAHNATKMA 415 (699)
Q Consensus 397 slQ~aLe~E~~aHk~Tk~e 415 (699)
++|++|++|..+|+.|++.
T Consensus 147 alQ~~~eqE~~~H~~Tkar 165 (168)
T 3o0z_A 147 SLQQRLEQEVNEHKVTKAR 165 (168)
T ss_dssp HHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999873
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.16 E-value=4e-06 Score=81.62 Aligned_cols=35 Identities=6% Similarity=0.025 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 005378 346 ETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (699)
Q Consensus 346 ~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~ 380 (699)
..+...+..+...+.....++..+..+...+...+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (284)
T 1c1g_A 72 ELAEKKATDAEADVASLNRRIQLFEEELDRAQERL 106 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444333
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.09 E-value=1.2e-05 Score=78.17 Aligned_cols=32 Identities=13% Similarity=0.051 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 548 YRELTDLLYYKQTQLETMASEKAAAEFQLEKE 579 (699)
Q Consensus 548 l~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~ 579 (699)
+..+...+...+..+..+....+.+..+++.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (284)
T 1c1g_A 246 VTKLEKSIDDLEDELYAQKLKYKAISEELDHA 277 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334444444444433
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.82 E-value=7.4e-09 Score=125.86 Aligned_cols=43 Identities=21% Similarity=0.202 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 542 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQ 584 (699)
Q Consensus 542 ~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~ 584 (699)
..++.++.+|.++|.+.......+..++..|..+++.+..+++
T Consensus 1119 ~~Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Ie 1161 (1184)
T 1i84_S 1119 RELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELE 1161 (1184)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555444444455555555555555444443
No 5
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.67 E-value=3.9e-08 Score=119.59 Aligned_cols=98 Identities=12% Similarity=0.071 Sum_probs=37.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 005378 281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAA 360 (699)
Q Consensus 281 LrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~ 360 (699)
+++.+.+++.....++..+.++......|+.++..++.++..++..+...+. .+.....++..++.++..++.++.
T Consensus 862 L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~----~l~~l~~~~~~Le~~l~ele~ele 937 (1184)
T 1i84_S 862 KDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEE----MRVRLAAKKQELEEILHEMEARIE 937 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444455555555555555555555544444433322 222233344444444444444444
Q ss_pred HHHHHHHHHHHHHHHHhHhhhh
Q 005378 361 LSEGNLASLQMNMESIMRNREL 382 (699)
Q Consensus 361 r~k~rLeelq~E~~~L~e~~s~ 382 (699)
..+..+..++.++..+...+..
T Consensus 938 e~ee~l~el~~e~~~le~el~~ 959 (1184)
T 1i84_S 938 EEEERSQQLQAEKKKMQQQMLD 959 (1184)
T ss_dssp HHHHC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433333
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.53 E-value=0.024 Score=56.14 Aligned_cols=107 Identities=16% Similarity=0.199 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 005378 296 EELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMN--- 372 (699)
Q Consensus 296 Ee~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E--- 372 (699)
++.+.--++.+..+..++.+|+.+|..-|..=..++..+-..|......+..|+.++..+..++...+.++.....+
T Consensus 9 ~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~ 88 (189)
T 2v71_A 9 KEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYK 88 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556677777888888888888888777777776666666666667777777777777777777666666555
Q ss_pred -HHHHhHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 005378 373 -MESIMRNRELTETRMIQALREELASVERRAE 403 (699)
Q Consensus 373 -~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe 403 (699)
...|+..++.+... +.++...|+.++++-+
T Consensus 89 ~~~~Lq~el~~l~~~-~~~l~~~ireLEq~ND 119 (189)
T 2v71_A 89 QVSVLEDDLSQTRAI-KEQLHKYVRELEQAND 119 (189)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 33344444333333 4444444444444443
No 7
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.27 E-value=0.052 Score=52.76 Aligned_cols=94 Identities=16% Similarity=0.206 Sum_probs=52.1
Q ss_pred HHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q 005378 374 ESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKM---AAMEREVELEHRAAEASMALARIQRIADERT---AK 447 (699)
Q Consensus 374 ~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~---ea~~Re~~LEeenaelseALa~lQrkL~EEk---~r 447 (699)
+-|++....+++. +.+|+.++..+|..|+.|+......-. ++..|...|+.+. ........+-..+.+ -+
T Consensus 51 rELq~~~~~L~~~-k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El---~~~k~~~~k~~~e~r~L~Ek 126 (168)
T 3o0z_A 51 RELQERNRILENS-KSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEV---KHLKHNLEKVEGERKEAQDM 126 (168)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444 566666677777777777766555433 3334444443333 222222222222222 46
Q ss_pred HHHHHHHHhhhH----HHHHHHHHHHHH
Q 005378 448 AGELEQKVAMLE----VECATLQQELQD 471 (699)
Q Consensus 448 a~eLeqQ~smLe----~dl~qLkQeLqd 471 (699)
+..|++..+.++ ++++.+++.++.
T Consensus 127 l~~lEKe~a~~eid~~~eLKalQ~~~eq 154 (168)
T 3o0z_A 127 LNHSEKEKNNLEIDLNYKLKSLQQRLEQ 154 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 678888888888 668888888754
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.06 E-value=0.17 Score=51.62 Aligned_cols=22 Identities=5% Similarity=-0.106 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005378 422 ELEHRAAEASMALARIQRIADE 443 (699)
Q Consensus 422 ~LEeenaelseALa~lQrkL~E 443 (699)
.+++..+++...++.++..+..
T Consensus 140 ~l~~~~~~~~~~~~e~~~e~~~ 161 (256)
T 3na7_A 140 LALELESLVENEVKNIKETQQI 161 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444333
No 9
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.90 E-value=0.19 Score=51.17 Aligned_cols=29 Identities=17% Similarity=0.147 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 343 SEIETLVSSIDALKKQAALSEGNLASLQM 371 (699)
Q Consensus 343 sEi~eLe~RL~~LeqeL~r~k~rLeelq~ 371 (699)
.++.++...+..++.++...+.++.+.+.
T Consensus 53 ~~l~d~~~~~~~~e~~i~~~~~ri~~~~~ 81 (256)
T 3na7_A 53 EEKLALKLQVSKNEQTLQDTNAKIASIQK 81 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444433
No 10
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.60 E-value=0.065 Score=65.12 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=8.1
Q ss_pred HHHhhhHHHHHHHHHHHHHHH
Q 005378 453 QKVAMLEVECATLQQELQDME 473 (699)
Q Consensus 453 qQ~smLe~dl~qLkQeLqd~e 473 (699)
.+++.|+.+...|+|.+.+++
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 11
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.56 E-value=0.46 Score=63.53 Aligned_cols=53 Identities=23% Similarity=0.251 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhc
Q 005378 428 AEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (699)
Q Consensus 428 aelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~q 480 (699)
+++.+.+...+.+|.+-+.++.+++.++..|+.+++.+..+.+.++.+++..+
T Consensus 2017 ~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~ 2069 (3245)
T 3vkg_A 2017 EQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVK 2069 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555666666666666666666666666666555555555555443
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.50 E-value=0.074 Score=64.61 Aligned_cols=51 Identities=10% Similarity=0.229 Sum_probs=9.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHH
Q 005378 275 ARVCAGLSSRLQEYKSENAQLEELLVAERELSR----SYEARIKQLEQELSVYKS 325 (699)
Q Consensus 275 a~~~aRLrK~~~ELkke~aqLEe~l~elqek~~----~Lq~kl~qLQ~EL~~eQ~ 325 (699)
......|.+.+.+|+......|..+.+++++.. .+..++..|+.++..++.
T Consensus 920 ~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~ 974 (1080)
T 2dfs_A 920 KKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM 974 (1080)
T ss_dssp -------------------------------CHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 334566666666676666666666666665544 333455555555555444
No 13
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.96 E-value=3.1 Score=55.95 Aligned_cols=89 Identities=15% Similarity=0.220 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 491 IQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKA 570 (699)
Q Consensus 491 i~~leeEl~r~r~~~~~le~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~ 570 (699)
++.+++++......+..++.+|..+++.|+.|+.+..... .....++.++......|..=..-+..|.+|+.
T Consensus 2016 l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~--------~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~ 2087 (3245)
T 3vkg_A 2016 VEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLI--------RETEQIKTESSKVKNKVDRSIALLDNLNSERG 2087 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 4555555554444444444455555555555554433221 22456777777788888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005378 571 AAEFQLEKEMNRLQEVQ 587 (699)
Q Consensus 571 sL~~qLE~~~~~a~~~~ 587 (699)
-+..+.+.+..++...-
T Consensus 2088 RW~~~~~~l~~~~~~L~ 2104 (3245)
T 3vkg_A 2088 RWEQQSENFNTQMSTVV 2104 (3245)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcc
Confidence 99998888877766553
No 14
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.25 E-value=1.1 Score=42.95 Aligned_cols=68 Identities=13% Similarity=0.166 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005378 307 RSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIM 377 (699)
Q Consensus 307 ~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~ 377 (699)
...+..+..++.+|+.+-..+|..-..+... .+-+...++.|...|..++......+..++..+..|+
T Consensus 75 ~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~---ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK 142 (154)
T 2ocy_A 75 TKAEEEADKLNKEVEDLTASLFDEANNMVAD---ARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLK 142 (154)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555544433322 3333444444444444444444444444444444443
No 15
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=94.99 E-value=0.46 Score=45.16 Aligned_cols=60 Identities=22% Similarity=0.378 Sum_probs=44.2
Q ss_pred HHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHH
Q 005378 495 QDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLL 555 (699)
Q Consensus 495 eeEl~r~r~~~~~le~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L 555 (699)
+.++.+...-...++.++..++.+|..+.+.|+.+.-+-+.| ++....|+.+|+.|++.|
T Consensus 86 E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eeka-s~rE~~yee~I~~L~~kL 145 (147)
T 2b9c_A 86 ESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEEL-LSKNYHLENEVARLKKLV 145 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTH-HHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHH-HHHHHHHHHHHHHHHHHh
Confidence 344444444445566777888999999998898888665555 477899999999988765
No 16
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=94.93 E-value=2.3 Score=39.22 Aligned_cols=102 Identities=11% Similarity=0.039 Sum_probs=70.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 005378 281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAA 360 (699)
Q Consensus 281 LrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~ 360 (699)
+.+.+..++......+....++......|...+..|+..|..++..+...++ ..........+|...|..+...+.
T Consensus 18 ~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE----~~~~L~~~k~eLe~~l~el~~rle 93 (129)
T 2fxo_A 18 MKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEE----RCDQLIKNKIQLEAKVKEMNKRLE 93 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555555566677778888888888888877766665544 333456666677778888888888
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhHHH
Q 005378 361 LSEGNLASLQMNMESIMRNRELTETR 386 (699)
Q Consensus 361 r~k~rLeelq~E~~~L~e~~s~~Eke 386 (699)
..+.....+...++.+...+.++.++
T Consensus 94 eeee~~~~L~~~kkkle~e~~~Lk~~ 119 (129)
T 2fxo_A 94 DEEEMNAELTAKKRKLEDECSELKRD 119 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887777777666
No 17
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=94.41 E-value=3 Score=38.35 Aligned_cols=59 Identities=24% Similarity=0.371 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 005378 415 AAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDME 473 (699)
Q Consensus 415 ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e 473 (699)
++-.|...|...+++|..-|..++..+.++-.....|...-.-++..+..|+.+|++++
T Consensus 66 e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 66 DAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345566666777778888888888888888888888888888888888888887765
No 18
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.02 E-value=5.2 Score=39.55 Aligned_cols=116 Identities=13% Similarity=0.090 Sum_probs=58.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 005378 304 ELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT 383 (699)
Q Consensus 304 ek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~ 383 (699)
+.+.-......+....+..++.++..-....++= =++|+..|..++.....++.++..+..+...+..+....
T Consensus 10 ee~~ywk~~~~~~~q~~~~le~El~EFqesSrEL-------E~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~ 82 (189)
T 2v71_A 10 EETAYWKELSMKYKQSFQEARDELVEFQEGSREL-------EAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQ 82 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667777777777777777665533322 124444455555555555555555555555554444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 384 ETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMAL 434 (699)
Q Consensus 384 Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseAL 434 (699)
.++ .....+.|..+...-+.++..+..+.-+||..|-.|..+.
T Consensus 83 ~~e--------~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~ 125 (189)
T 2v71_A 83 YAQ--------SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAK 125 (189)
T ss_dssp HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 222 2222222223333333344444457777777774444433
No 19
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=93.93 E-value=4.7 Score=38.69 Aligned_cols=91 Identities=16% Similarity=0.234 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHH
Q 005378 307 RSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI-DALKKQAALSEGNLASLQMNMESIMRNRELTET 385 (699)
Q Consensus 307 ~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL-~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Ek 385 (699)
.....++..|..+|..++..|...+. .....+.++++|-..| +.++..+...+..-..++.-+..|...+.+.+.
T Consensus 54 ~~~~~e~~~L~~~l~~E~~~R~~aE~----~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~ 129 (154)
T 2ocy_A 54 SDRDDEVKRLREDIAKENELRTKAEE----EADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDT 129 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666788888888888888877765 3445888999999888 889999988888878888888888888888777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005378 386 RMIQALREELASVERRA 402 (699)
Q Consensus 386 e~lqSLE~eLkslQ~aL 402 (699)
. +.+++..|..|+.-+
T Consensus 130 ~-l~~lq~ql~~LK~v~ 145 (154)
T 2ocy_A 130 L-LDTLTLQLKNLKKVM 145 (154)
T ss_dssp H-HHHHHHHHHHHHHTT
T ss_pred H-HHHHHHHHHHHHHHH
Confidence 7 888888877776543
No 20
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=93.46 E-value=1 Score=41.12 Aligned_cols=94 Identities=14% Similarity=0.209 Sum_probs=54.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 005378 273 RLARVCAGLSSRLQEYKSENAQLEELLVAERE----LSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETL 348 (699)
Q Consensus 273 qLa~~~aRLrK~~~ELkke~aqLEe~l~elqe----k~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eL 348 (699)
.|.....+|++.++.+......||..+.+-.+ .++.|...+..-+..|..+|..+.+.++. +
T Consensus 10 ~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~--------------v 75 (112)
T 1x79_B 10 KLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRD--------------V 75 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H
Confidence 35555667777777777777777776665433 44577778888888888888888887773 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 005378 349 VSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (699)
Q Consensus 349 e~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~ 380 (699)
+..|..|...-+++...|..++.+|+.|.-++
T Consensus 76 q~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~Gk~ 107 (112)
T 1x79_B 76 QEQMAVLMQSREQVSEELVRLQKDNDSLQGKH 107 (112)
T ss_dssp HHHHHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhhhh
Confidence 44556666666677777777777777776554
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.36 E-value=0.75 Score=51.10 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 005378 432 MALARIQRIADERTAKAGELEQKVAMLEVECATLQQEL 469 (699)
Q Consensus 432 eALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeL 469 (699)
+-+.++++++++.+.+..++.+++..+..+++++.+++
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445666666666666666665555555555554444
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.32 E-value=1.7 Score=48.29 Aligned_cols=48 Identities=13% Similarity=0.113 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 005378 355 LKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAE 403 (699)
Q Consensus 355 LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe 403 (699)
+.+.++..+.+.+.+..++..+.+......+. +..++.+...++..++
T Consensus 507 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~le~~~~ 554 (597)
T 3oja_B 507 LNKVFTHLKERQAFKLRETQARRTEADAKQKE-TEDLEQENIALEKQLD 554 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcc-hhhHHhhhHHHHHHHh
Confidence 33334444444444444444444444443333 4444444444444443
No 23
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=92.78 E-value=4.5 Score=35.90 Aligned_cols=21 Identities=10% Similarity=0.044 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005378 347 TLVSSIDALKKQAALSEGNLA 367 (699)
Q Consensus 347 eLe~RL~~LeqeL~r~k~rLe 367 (699)
.|..+|+.++.++.....+|.
T Consensus 48 sL~kk~~~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 48 QLEKQLRVTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443333333
No 24
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=92.36 E-value=0.61 Score=43.86 Aligned_cols=62 Identities=16% Similarity=0.130 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 307 RSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQM 371 (699)
Q Consensus 307 ~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~ 371 (699)
...+..+..++.+|+.+-..++..-..+... .+-+...++.+...|..++......+..++.
T Consensus 63 ~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~---ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~ 124 (135)
T 2e7s_A 63 TKAEEEADKLNKEVEDLTASLFDEANNLVAD---ARMEKYAIEILNKRLTEQLREKDMLLDTLTL 124 (135)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHTTTHHHHCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555544433321 3333334444444444444444333333333
No 25
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=92.31 E-value=6.5 Score=35.82 Aligned_cols=62 Identities=18% Similarity=0.215 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHhhhhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005378 251 DQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSV 322 (699)
Q Consensus 251 kQLeE~n~~LrsE~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~ 322 (699)
+.|...+..|+.|.+. ...++.....+..+....|+..+..++.....|...+..|+...+.
T Consensus 6 rdL~~~~~~L~~E~e~----------~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDD 67 (111)
T 2v66_B 6 RDLQADNQRLKYEVEA----------LKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDD 67 (111)
T ss_dssp HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 3455556666666664 5555555666666666666666666666666666666666655544
No 26
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=91.23 E-value=7.2 Score=34.39 Aligned_cols=25 Identities=8% Similarity=0.069 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 347 TLVSSIDALKKQAALSEGNLASLQM 371 (699)
Q Consensus 347 eLe~RL~~LeqeL~r~k~rLeelq~ 371 (699)
.|+.++..++.++.....++..++.
T Consensus 48 sL~kKiq~lE~eld~~~e~l~~a~~ 72 (101)
T 3u59_A 48 GLQKKLKGTEDEVEKYSESVKEAQE 72 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433333
No 27
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=91.00 E-value=0.46 Score=44.67 Aligned_cols=91 Identities=15% Similarity=0.211 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHH
Q 005378 307 RSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI-DALKKQAALSEGNLASLQMNMESIMRNRELTET 385 (699)
Q Consensus 307 ~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL-~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Ek 385 (699)
..+..++..|..+|..++..|...+. .....+.++++|...| +.++..+...+..-..++.-+..|...+.+.+.
T Consensus 42 ~~~~~e~~~L~~~l~eE~~~R~~aE~----~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ 117 (135)
T 2e7s_A 42 SDRDDEVKRLREDIAKENELRTKAEE----EADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDM 117 (135)
T ss_dssp TTHHHHHHTHHHHHHHTTSHHHHHHH----TTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666788888888888888888766 3446788999999988 899999998888888888889999999988877
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005378 386 RMIQALREELASVERRA 402 (699)
Q Consensus 386 e~lqSLE~eLkslQ~aL 402 (699)
- +.+++..|..|+.-+
T Consensus 118 l-l~~lq~QL~~LK~v~ 133 (135)
T 2e7s_A 118 L-LDTLTLQLKNLKKVM 133 (135)
T ss_dssp C-C--------------
T ss_pred H-HHHHHHHHHHHHHHh
Confidence 7 888888888877544
No 28
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=90.69 E-value=4.5 Score=36.92 Aligned_cols=83 Identities=11% Similarity=0.128 Sum_probs=61.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 005378 304 ELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT 383 (699)
Q Consensus 304 ek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~ 383 (699)
+-...|+..+.+|+.+|..+...+..+++...+.-+.=..+++.|..+++..++.|..+....+.++.+.+.=+..+...
T Consensus 6 ~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~ 85 (112)
T 1x79_B 6 DQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQS 85 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456777777888888888888888887777776677778888888888888888888888887777766666655554
Q ss_pred HHH
Q 005378 384 ETR 386 (699)
Q Consensus 384 Eke 386 (699)
-++
T Consensus 86 Re~ 88 (112)
T 1x79_B 86 REQ 88 (112)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 29
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=90.54 E-value=10 Score=34.59 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 005378 284 RLQEYKSENAQLEELLVAERELSRSYEA----RIKQLEQELSVYKSEVTKVE 331 (699)
Q Consensus 284 ~~~ELkke~aqLEe~l~elqek~~~Lq~----kl~qLQ~EL~~eQ~er~q~e 331 (699)
+..+|+..+..|.-.+...+.+...... .+..||.++..++.....+.
T Consensus 4 ~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~ 55 (111)
T 2v66_B 4 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLH 55 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443322 34444444444444444433
No 30
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=90.31 E-value=13 Score=35.60 Aligned_cols=30 Identities=27% Similarity=0.452 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005378 348 LVSSIDALKKQAALSEGNLASLQMNMESIM 377 (699)
Q Consensus 348 Le~RL~~LeqeL~r~k~rLeelq~E~~~L~ 377 (699)
+++.|.+++..+.....+...++.+++.+.
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~ 55 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVT 55 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444333
No 31
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=89.70 E-value=15 Score=35.26 Aligned_cols=41 Identities=22% Similarity=0.197 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 005378 430 ASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQ 470 (699)
Q Consensus 430 lseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLq 470 (699)
|..-|..+..+|.+--.++.+.++.+..|+.++..+-.+|.
T Consensus 75 yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~ 115 (155)
T 2efr_A 75 YEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELY 115 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666666666655555553
No 32
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=89.52 E-value=7.5 Score=34.65 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=16.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 303 RELSRSYEARIKQLEQELSVYKSEVTKVESNLA 335 (699)
Q Consensus 303 qek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~ 335 (699)
+.+....+..+..++.+|+.+-.+++..-..+.
T Consensus 39 ~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MV 71 (97)
T 2eqb_B 39 NELRTKAEEEADKLNKEVEDLTASLFDEANNMV 71 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555555555444333
No 33
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=88.27 E-value=13 Score=32.86 Aligned_cols=51 Identities=14% Similarity=0.147 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHH
Q 005378 348 LVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVE 399 (699)
Q Consensus 348 Le~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ 399 (699)
++.+|+.|..+......+.+.++..++.+.......+.+ +.+|...+..++
T Consensus 7 IKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~E-i~sL~kk~~~lE 57 (101)
T 3u1c_A 7 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDD-IVQLEKQLRVTE 57 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444 444444443333
No 34
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=86.53 E-value=7.5 Score=33.56 Aligned_cols=71 Identities=10% Similarity=0.171 Sum_probs=52.7
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 506 RDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQ 584 (699)
Q Consensus 506 ~~le~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~ 584 (699)
..++.|+...=+.|.-|+-++.+++.. ...|.....+++..-..+....+.|..|++++.-+|..+..+.+
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKek--------N~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e 79 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEK--------NNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445666666666677777777776643 44566677777777777888899999999999999998887754
No 35
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=85.60 E-value=22 Score=32.66 Aligned_cols=90 Identities=11% Similarity=0.141 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 005378 284 RLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSE 363 (699)
Q Consensus 284 ~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k 363 (699)
..+|.+-...-|+..|...++-.+.-+.+...--.....++..+...+.. ....+.+|++.|..|++.|....
T Consensus 19 Aq~ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq-------~q~~vqeLqgEI~~Lnq~Lq~a~ 91 (121)
T 3mq7_A 19 AVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQ-------GQKKVEELEGEITTLNHKLQDAS 91 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666655555544333333333444333333321 12346677777777777777777
Q ss_pred HHHHHHHHHHHHHhHhh
Q 005378 364 GNLASLQMNMESIMRNR 380 (699)
Q Consensus 364 ~rLeelq~E~~~L~e~~ 380 (699)
..++.+..++.-+..++
T Consensus 92 ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 92 AEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhchhhhhHh
Confidence 77777766666555444
No 36
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=84.79 E-value=26 Score=32.86 Aligned_cols=139 Identities=17% Similarity=0.266 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHH
Q 005378 306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTET 385 (699)
Q Consensus 306 ~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Ek 385 (699)
...|++.+..++.+|+.-|.++.-.-..++ +-++.++.++..-..-...+.++.+++..++.++....+
T Consensus 13 ia~L~~D~~s~~~eleEnqeEL~iVgkML~-----------EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~ 81 (167)
T 4gkw_A 13 VADLKQDTESLQKQLEENQEELEIVGNMLR-----------EEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQ 81 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 345666677777777776666665544343 334455555544444455556666666666666544322
Q ss_pred HH--------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005378 386 RM--------IQALR-EELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVA 456 (699)
Q Consensus 386 e~--------lqSLE-~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~s 456 (699)
.. -+|+. ..|+.++..|.. + -.--..|...+-.+.+.|..++.++.+.=.-+.
T Consensus 82 ~Lkrn~~qQnQQSlDiRKLrELEADLKE--------K----------DsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE 143 (167)
T 4gkw_A 82 LLKRNSQQQNQQSLDMRKLGELEADLKE--------K----------DSMVESLTETIGILRKELENEKLKAAENMDSFE 143 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHTHHH--------H----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHhHhhhhHHHHHHHHhHHhh--------h----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 20 12222 123333333310 0 111134567788899999999988888777777
Q ss_pred hhHHHHHHHHHHHHHHH
Q 005378 457 MLEVECATLQQELQDME 473 (699)
Q Consensus 457 mLe~dl~qLkQeLqd~e 473 (699)
.|.++-+.++++|.-|.
T Consensus 144 ~LkvENE~vkerl~mYR 160 (167)
T 4gkw_A 144 KLSMENENLKEKIAHYR 160 (167)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHhhhhHhHHHHHHHHH
Confidence 79999999999997663
No 37
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=84.23 E-value=12 Score=31.61 Aligned_cols=51 Identities=12% Similarity=0.189 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHH
Q 005378 351 SIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRA 402 (699)
Q Consensus 351 RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aL 402 (699)
++..++..+...+.+..++..+...|+.++..++.+ +...+..|..++..|
T Consensus 21 ~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~e-ld~~ee~l~~a~~kL 71 (81)
T 1ic2_A 21 RAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDE-LDKYSESLKDAQEKL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 333333333333333344444444444333333333 333333333333333
No 38
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=83.72 E-value=20 Score=32.59 Aligned_cols=33 Identities=21% Similarity=0.393 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q 005378 446 AKAGELEQKVAMLEVECATLQQELQDMEARLKR 478 (699)
Q Consensus 446 ~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r 478 (699)
+.++.+...-.-+..++..++..+++++.+.+.
T Consensus 27 ~qid~~~~e~a~l~leldn~~~~~edfk~KyE~ 59 (119)
T 3ol1_A 27 RQVDQLTNDKARVEVERDNLAEDIMRLREKLQE 59 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 334444444445566666666666666655553
No 39
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=83.16 E-value=23 Score=31.06 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHH
Q 005378 348 LVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRA 402 (699)
Q Consensus 348 Le~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aL 402 (699)
++..|+.|..+......+...++..++.+.......+.+ +.++...+..++..+
T Consensus 7 iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~e-i~sL~kKiq~lE~el 60 (101)
T 3u59_A 7 IKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEE-QQGLQKKLKGTEDEV 60 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHH
Confidence 444455555555555555555555555444444444444 444444444444333
No 40
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=82.84 E-value=11 Score=35.31 Aligned_cols=18 Identities=22% Similarity=0.506 Sum_probs=9.6
Q ss_pred HHHHHHHhhhhhHHHHHH
Q 005378 272 ARLARVCAGLSSRLQEYK 289 (699)
Q Consensus 272 ~qLa~~~aRLrK~~~ELk 289 (699)
..|..++.-++..+.+++
T Consensus 28 e~L~~vA~~vd~km~ei~ 45 (138)
T 3hnw_A 28 EYLQRVASYINNKITEFN 45 (138)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555555555
No 41
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=82.28 E-value=13 Score=35.24 Aligned_cols=11 Identities=18% Similarity=0.259 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 005378 312 RIKQLEQELSV 322 (699)
Q Consensus 312 kl~qLQ~EL~~ 322 (699)
++..|+.+|..
T Consensus 53 r~~~lE~qLke 63 (147)
T 2b9c_A 53 KMEIQEIQLKE 63 (147)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 42
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=81.32 E-value=31 Score=31.35 Aligned_cols=73 Identities=18% Similarity=0.128 Sum_probs=43.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 506 RDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL 583 (699)
Q Consensus 506 ~~le~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a 583 (699)
..+|..|..+..++.+|+.++......++. -..|+.|+.--.+--..--..=|.+.+|+..|..||+.+..++
T Consensus 34 ~~AEeaL~~Kq~~idelk~ei~q~~~~lE~-----I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 34 QQAEEALVAKQELIDKLKEEAEQHKIVMET-----VPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 334455556666666666666554444432 2345555554444444444666778888888888888877654
No 43
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=81.05 E-value=35 Score=36.74 Aligned_cols=25 Identities=12% Similarity=0.227 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 351 SIDALKKQAALSEGNLASLQMNMES 375 (699)
Q Consensus 351 RL~~LeqeL~r~k~rLeelq~E~~~ 375 (699)
|+++++.++..+...|..+..+.++
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444443
No 44
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=80.87 E-value=22 Score=30.05 Aligned_cols=38 Identities=13% Similarity=0.112 Sum_probs=26.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005378 340 AKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIM 377 (699)
Q Consensus 340 ak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~ 377 (699)
....++..|..+|..++.++.....++..++..+....
T Consensus 38 ~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeae 75 (81)
T 1ic2_A 38 QLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELAD 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667778888888888888777777776665443
No 45
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=80.05 E-value=38 Score=37.91 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 005378 308 SYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIET 347 (699)
Q Consensus 308 ~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~e 347 (699)
.+|.++..-|++|.+.|..-...+..+...+++.+++.+.
T Consensus 6 ~yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~ 45 (497)
T 3iox_A 6 DYQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAA 45 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 4455555555566555555555555444444444333333
No 46
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=79.96 E-value=31 Score=30.32 Aligned_cols=70 Identities=17% Similarity=0.307 Sum_probs=37.8
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 510 NKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM 580 (699)
Q Consensus 510 ~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~ 580 (699)
..|..++.+-..+..++..++...... ...+..|=..++.+.-++++-+..+.+|.....--..||+++.
T Consensus 25 ~eL~~lEke~~~l~~el~~le~E~~~L-~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 25 QELEDVEKNRKVVAENLEKVQAEAERL-DQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444433222211 1224555666777777777777777776666666666666653
No 47
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=78.70 E-value=39 Score=30.79 Aligned_cols=15 Identities=13% Similarity=0.124 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 005378 284 RLQEYKSENAQLEEL 298 (699)
Q Consensus 284 ~~~ELkke~aqLEe~ 298 (699)
-+.+++.....|+..
T Consensus 37 Ei~elrr~iq~L~~e 51 (129)
T 3tnu_B 37 EISEMNRMIQRLRAE 51 (129)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 48
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=78.25 E-value=23 Score=33.84 Aligned_cols=65 Identities=17% Similarity=0.273 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 005378 312 RIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (699)
Q Consensus 312 kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~ 380 (699)
.+..|+.++..++..+...+. .+..++..++.+...+.+|+-++..++.++.+++.|+..|-++.
T Consensus 69 ~I~~L~~El~~l~~ki~dLee----el~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKE----VIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555554443 33456666777777788888888888888888888877766655
No 49
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=76.97 E-value=38 Score=29.77 Aligned_cols=30 Identities=20% Similarity=0.164 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 347 TLVSSIDALKKQAALSEGNLASLQMNMESI 376 (699)
Q Consensus 347 eLe~RL~~LeqeL~r~k~rLeelq~E~~~L 376 (699)
+|+.||.-.+.+-..++..|.++..++.+|
T Consensus 71 dLE~RLsKtEKDkAiLELkLaE~~Dek~rL 100 (101)
T 1d7m_A 71 ELEARLAKTEKDRAILELKLAEAIDEKSKL 100 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHhhhhhhhc
Confidence 577777777777777777788887777765
No 50
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=76.85 E-value=26 Score=29.62 Aligned_cols=31 Identities=10% Similarity=0.336 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005378 347 TLVSSIDALKKQAALSEGNLASLQMNMESIM 377 (699)
Q Consensus 347 eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~ 377 (699)
+|+.++..+++.+...+..-..++.+..++.
T Consensus 18 ~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~ 48 (72)
T 3cve_A 18 DLEGQLSEMEQRLEKSQSEQDAFRSNLKTLL 48 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333434433333
No 51
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=76.84 E-value=40 Score=29.97 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 005378 306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI-DALKKQAALSEGNLASLQMNMESIMRNREL 382 (699)
Q Consensus 306 ~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL-~~LeqeL~r~k~rLeelq~E~~~L~e~~s~ 382 (699)
...+..++..|..+|..++..|...+. .....+.++++|...| +.++..+...+..-..++.-+++|...+.+
T Consensus 21 ~~~~~~e~~~L~~~l~eE~~~R~~aE~----~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 21 LSDRDDEVKRLREDIAKENELRTKAEE----EADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334666777788888888888877765 3456788899999888 888888888877767777777777666544
No 52
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=76.13 E-value=40 Score=30.82 Aligned_cols=13 Identities=23% Similarity=0.314 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 005378 285 LQEYKSENAQLEE 297 (699)
Q Consensus 285 ~~ELkke~aqLEe 297 (699)
+.+++.....|+.
T Consensus 40 i~elrr~iq~L~~ 52 (131)
T 3tnu_A 40 ISELRRTMQNLEI 52 (131)
T ss_dssp -CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 53
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=75.79 E-value=22 Score=34.06 Aligned_cols=48 Identities=13% Similarity=0.222 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 541 HMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQS 588 (699)
Q Consensus 541 ~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~~~~~ 588 (699)
.+.++.+|..|.+.|.+|...++.|..|..+|.+++..++.+++..+.
T Consensus 77 l~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~ 124 (152)
T 3a7p_A 77 LKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKK 124 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455778999999999999999999999999999999999888776643
No 54
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=75.50 E-value=42 Score=29.47 Aligned_cols=31 Identities=10% Similarity=0.172 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 342 NSEIETLVSSIDALKKQAALSEGNLASLQMN 372 (699)
Q Consensus 342 ~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E 372 (699)
..+.+.+...|..++.+...+.......-.+
T Consensus 31 Eke~~~l~~el~~le~E~~~L~~eE~~~w~e 61 (96)
T 3q8t_A 31 EKNRKVVAENLEKVQAEAERLDQEEAQYQRE 61 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3333344444444444444333333333333
No 55
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=75.40 E-value=27 Score=39.40 Aligned_cols=15 Identities=20% Similarity=0.217 Sum_probs=0.0
Q ss_pred HhHHhhcchhHHHHH
Q 005378 643 ATRFLWRYPIARIIL 657 (699)
Q Consensus 643 ~g~fLRRyP~aRl~~ 657 (699)
+.-|.+|+|-.=-||
T Consensus 487 ld~~~~rhpd~~~ff 501 (562)
T 3ghg_A 487 LDGFRHRHPDEAAFF 501 (562)
T ss_dssp ---------------
T ss_pred hhhhhhhCcchHhhc
Confidence 567889999865554
No 56
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=75.24 E-value=46 Score=37.52 Aligned_cols=37 Identities=16% Similarity=0.207 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 005378 345 IETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRE 381 (699)
Q Consensus 345 i~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s 381 (699)
|..|+.+|+.--+.+..++..|+++..++++|..++.
T Consensus 119 IqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 119 IEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444443
No 57
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=74.63 E-value=43 Score=29.24 Aligned_cols=40 Identities=15% Similarity=0.193 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 005378 284 RLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVY 323 (699)
Q Consensus 284 ~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~e 323 (699)
.+.++......+...+..++.....+..++..++..+..+
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444445555555555555443
No 58
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=73.18 E-value=1.1e+02 Score=34.05 Aligned_cols=40 Identities=8% Similarity=0.174 Sum_probs=19.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005378 281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQEL 320 (699)
Q Consensus 281 LrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL 320 (699)
+++.+++|+....+|+..-.+.......|+..+...|..+
T Consensus 98 V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi 137 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQR 137 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccc
Confidence 4455555555555555544444444444444444444443
No 59
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=73.11 E-value=27 Score=30.46 Aligned_cols=58 Identities=21% Similarity=0.256 Sum_probs=34.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 512 LSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKE 579 (699)
Q Consensus 512 l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~ 579 (699)
...+|.+...|..+|..++.+ .++.....|+..|..|+. +|+.+..+++.+..++..+
T Consensus 25 VR~LEqqN~~Le~~i~~l~~~---~~~~~~~~ye~~i~~Lr~-------~i~~~~~ek~~l~~e~dnl 82 (93)
T 3s4r_A 25 VRFLEQQNKILLAELEQLKGQ---GKSRLGDLYEEEMRELRR-------QVDQLTNDKARVEVERDNL 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc---cCCCcHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 346677777777777766632 122334567777777765 4555555555555555543
No 60
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=72.87 E-value=54 Score=29.80 Aligned_cols=19 Identities=5% Similarity=0.137 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005378 308 SYEARIKQLEQELSVYKSE 326 (699)
Q Consensus 308 ~Lq~kl~qLQ~EL~~eQ~e 326 (699)
.|+.++.--..++..+++.
T Consensus 66 vLkaQv~IY~~DF~aERad 84 (110)
T 2v4h_A 66 VLKAQADIYKADFQAERHA 84 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchhh
Confidence 3333333333343333333
No 61
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=72.60 E-value=18 Score=31.03 Aligned_cols=30 Identities=7% Similarity=0.120 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 347 TLVSSIDALKKQAALSEGNLASLQMNMESI 376 (699)
Q Consensus 347 eLe~RL~~LeqeL~r~k~rLeelq~E~~~L 376 (699)
.|+.++..+++.+...+..-..++.+..++
T Consensus 24 ~Le~~v~~le~~Le~s~~~q~~~~~Elk~l 53 (79)
T 3cvf_A 24 ELEHQLRAMERSLEEARAERERARAEVGRA 53 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 62
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=72.40 E-value=18 Score=31.19 Aligned_cols=59 Identities=22% Similarity=0.380 Sum_probs=44.3
Q ss_pred HHHHHHHhhhhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005378 255 EAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK 324 (699)
Q Consensus 255 E~n~~LrsE~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ 324 (699)
+++--|.+|+-+ ..-|.+.+...+..+-..+..+++...++..|..++..|+.++..+|
T Consensus 14 eLQSALeaEIqA-----------KQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 14 ELQEALEEEVLT-----------RQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777764 66677777777777888888888777788888777777777777655
No 63
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=71.99 E-value=30 Score=29.88 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=22.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005378 276 RVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQ 318 (699)
Q Consensus 276 ~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~ 318 (699)
.+-.-|+.-+.+|+.++..|.+.+.+++.-...|..+..+|+.
T Consensus 20 dtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~ 62 (81)
T 2jee_A 20 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKE 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3455666666666666666666555444433333333333333
No 64
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=71.16 E-value=58 Score=29.19 Aligned_cols=33 Identities=9% Similarity=0.140 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 005378 348 LVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (699)
Q Consensus 348 Le~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~ 380 (699)
|+..|..-..+|..++..++..+.+...+...+
T Consensus 59 lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~ 91 (107)
T 2no2_A 59 LKQELATSQRELQVLQGSLETSAQSEANWAAEF 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444444443333
No 65
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=70.68 E-value=20 Score=30.79 Aligned_cols=36 Identities=11% Similarity=0.230 Sum_probs=21.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 300 VAERELSRSYEARIKQLEQELSVYKSEVTKVESNLA 335 (699)
Q Consensus 300 ~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~ 335 (699)
.++..++..|+.+|..|+..|+.-|.++...+.++.
T Consensus 16 q~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk 51 (79)
T 3cvf_A 16 QDLETRNAELEHQLRAMERSLEEARAERERARAEVG 51 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666677777777777766666655433
No 66
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=69.81 E-value=94 Score=33.36 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005378 347 TLVSSIDALKKQAALSEG 364 (699)
Q Consensus 347 eLe~RL~~LeqeL~r~k~ 364 (699)
+|++.|..++.+++..+.
T Consensus 447 ~~~~~~~~~~~~~~~~~~ 464 (471)
T 3mq9_A 447 ELEGEITTLNHKLQDASA 464 (471)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 67
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=69.13 E-value=16 Score=31.22 Aligned_cols=53 Identities=17% Similarity=0.233 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 323 YKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMES 375 (699)
Q Consensus 323 eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~ 375 (699)
.+..+.-.++++..++..+..+.+.|...+.++.+-..+.+.++.+++.+.++
T Consensus 24 TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 24 TKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445555555555555566666666666666666666666666666665543
No 68
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=68.82 E-value=59 Score=28.34 Aligned_cols=68 Identities=24% Similarity=0.208 Sum_probs=32.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 005378 305 LSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMR 378 (699)
Q Consensus 305 k~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e 378 (699)
+++.|+.+-..|+.++...+.... +.+. ..-.++|.+|...|+.+..+-.++...+..++.+...++.
T Consensus 24 KVR~LEqqN~~Le~~i~~l~~~~~---~~~~---~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 24 KVRFLEQQNKILLAELEQLKGQGK---SRLG---DLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccC---CCcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555544443211 1111 1134556666666665555555555555555555544443
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=68.59 E-value=68 Score=34.63 Aligned_cols=40 Identities=5% Similarity=-0.048 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHH
Q 005378 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR 386 (699)
Q Consensus 347 eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke 386 (699)
+++..+..+.++.+.......++.+++.++...+.+..+.
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (487)
T 3oja_A 425 EQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLA 464 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhh
Confidence 4444444556666666666666666777766666666555
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=68.40 E-value=1.3e+02 Score=32.30 Aligned_cols=56 Identities=11% Similarity=-0.015 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 396 ASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGEL 451 (699)
Q Consensus 396 kslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eL 451 (699)
......++.|+..+.........+...++++++.+...+..+...+.+.+.++.++
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
T 3oja_A 420 EEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQEL 475 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHH
Confidence 33344444444444444443444555555555444444444444444444444433
No 71
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=66.39 E-value=52 Score=27.74 Aligned_cols=37 Identities=27% Similarity=0.326 Sum_probs=24.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 299 LVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLA 335 (699)
Q Consensus 299 l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~ 335 (699)
+.++..++..|+.++..|+..|+.-|.++...+.++.
T Consensus 9 Lq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk 45 (72)
T 3cve_A 9 LQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLK 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666777777777788777776666655433
No 72
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=66.04 E-value=40 Score=30.89 Aligned_cols=41 Identities=17% Similarity=0.101 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 541 HMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMN 581 (699)
Q Consensus 541 ~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~ 581 (699)
...|+.||.+|--+|.+..........|..-|..+++.+..
T Consensus 42 v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 42 VLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRR 82 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999998887543
No 73
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=64.54 E-value=1.9e+02 Score=32.54 Aligned_cols=79 Identities=15% Similarity=0.280 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREV 421 (699)
Q Consensus 342 ~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~ 421 (699)
.+|+..|+.-+.++..-++.-..+|.++...+.+=....+..|..|+...+..+.+|+.+.+.|+.. +..++...-.
T Consensus 145 ~~q~~~LekAl~s~~~i~~~e~~~l~~L~~AL~kE~~~Rt~dE~~mi~~yr~k~~aL~~aIe~Er~~---~~EEAIqe~~ 221 (526)
T 3iyk_A 145 EKQFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKNAIEVERDG---MQEEAIQEIA 221 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHh
Confidence 4577788889999988888888999998888888778888889999999999999999999888765 5555554444
Q ss_pred HH
Q 005378 422 EL 423 (699)
Q Consensus 422 ~L 423 (699)
.+
T Consensus 222 dm 223 (526)
T 3iyk_A 222 GM 223 (526)
T ss_pred cc
Confidence 44
No 74
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=63.07 E-value=77 Score=27.61 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 005378 293 AQLEELLVAERELSRSYEARIKQLEQELSVYKSEVT 328 (699)
Q Consensus 293 aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~ 328 (699)
..++..+.+++.....|......+..++..++..+.
T Consensus 6 ~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~ 41 (112)
T 1l8d_A 6 EELETKKTTIEEERNEITQRIGELKNKIGDLKTAIE 41 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333343334444444444444444444444443333
No 75
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=62.99 E-value=16 Score=41.36 Aligned_cols=24 Identities=13% Similarity=0.131 Sum_probs=8.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Q 005378 446 AKAGELEQKVAMLEVECATLQQEL 469 (699)
Q Consensus 446 ~ra~eLeqQ~smLe~dl~qLkQeL 469 (699)
.++..|+.++.....+.+..+++|
T Consensus 433 ~e~~~~~~~~~~a~~~~~~~~~~l 456 (575)
T 2i1j_A 433 SETRRLQEEVEDARRKQDEAAAAL 456 (575)
T ss_dssp ---------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555544
No 76
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=62.94 E-value=2e+02 Score=32.36 Aligned_cols=31 Identities=16% Similarity=0.088 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 343 SEIETLVSSIDALKKQAALSEGNLASLQMNM 373 (699)
Q Consensus 343 sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~ 373 (699)
.-+..+...|++++..|............-+
T Consensus 349 ~~~~~~~~~~~~~n~~~~~~~~~~~~f~~~n 379 (551)
T 2b5u_A 349 QVYNSRKSELDAANKTLADAIAEIKQFNRFA 379 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred HHHHhhHHHHHhhhhHHHHHHHhhhhhhhhc
Confidence 3344445555666666666666555544333
No 77
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=62.80 E-value=89 Score=28.24 Aligned_cols=30 Identities=13% Similarity=0.057 Sum_probs=15.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 005378 280 GLSSRLQEYKSENAQLEELLVAERELSRSY 309 (699)
Q Consensus 280 RLrK~~~ELkke~aqLEe~l~elqek~~~L 309 (699)
.||.++..+..+++.++-.+..++.....+
T Consensus 24 ~LR~qid~~~~e~a~l~leldn~~~~~edf 53 (119)
T 3ol1_A 24 ELRRQVDQLTNDKARVEVERDNLAEDIMRL 53 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555444444433333
No 78
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=62.45 E-value=1e+02 Score=28.75 Aligned_cols=61 Identities=15% Similarity=0.182 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHH
Q 005378 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRA 402 (699)
Q Consensus 341 k~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aL 402 (699)
...+...|+..+..+..++..++..+..++.....+...+..+.++ +..++.++..++..+
T Consensus 73 ~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~-~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 73 AKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSE-INKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3344445555555555555566666665555555555555555555 555555555554433
No 79
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=62.36 E-value=1.3e+02 Score=32.70 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=7.6
Q ss_pred hhhhHHHHHHHHHhhhh
Q 005378 249 EQDQLDEAQGLLKTTIS 265 (699)
Q Consensus 249 lqkQLeE~n~~LrsE~e 265 (699)
|+.=|++.++.++..++
T Consensus 54 Lqg~Ldk~er~~~~rIe 70 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRIN 70 (390)
T ss_pred HHHHHHHhhhhHHHHHH
Confidence 44444444444444333
No 80
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=62.10 E-value=1.5e+02 Score=32.10 Aligned_cols=46 Identities=11% Similarity=0.133 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 005378 431 SMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARL 476 (699)
Q Consensus 431 seALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~ 476 (699)
.+....|++++..=+.+|..-=..+..|+..++.++-+++.++..+
T Consensus 112 ~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 112 KQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555333377788888888888888888877
No 81
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=62.05 E-value=83 Score=27.67 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 412 TKMAAMEREVELEHRAAEASMALAR 436 (699)
Q Consensus 412 Tk~ea~~Re~~LEeenaelseALa~ 436 (699)
+++++-.|+++.|.-++-+.-.+++
T Consensus 68 AkldLE~RLsKtEKDkAiLELkLaE 92 (101)
T 1d7m_A 68 ARMELEARLAKTEKDRAILELKLAE 92 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3677777888888777555444433
No 82
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=61.85 E-value=40 Score=29.00 Aligned_cols=16 Identities=19% Similarity=0.482 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHHHHH
Q 005378 541 HMELEKRYRELTDLLY 556 (699)
Q Consensus 541 ~~ele~rl~eLte~L~ 556 (699)
-.+|+.++..|+++|.
T Consensus 65 r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 65 RLDLERKVESLQEEIA 80 (86)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5677777777777764
No 83
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=61.45 E-value=65 Score=35.22 Aligned_cols=44 Identities=11% Similarity=0.043 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 005378 429 EASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDM 472 (699)
Q Consensus 429 elseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~ 472 (699)
.++..|...|+.+......+..+-++++-+......+.+.+++.
T Consensus 24 ~i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 24 GIADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677778888888888888777777777777778888777776
No 84
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=60.85 E-value=64 Score=29.54 Aligned_cols=63 Identities=14% Similarity=0.148 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 005378 313 IKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL 382 (699)
Q Consensus 313 l~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~ 382 (699)
+..|..++..++.++.....+. .--+..|++++..|+.++...+....++..+++.|...+..
T Consensus 17 Ie~Lkreie~lk~ele~l~~E~-------q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~ 79 (120)
T 3i00_A 17 IERLYREISGLKAQLENMKTES-------QRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDE 79 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555543322 23345666666666666666666666666666666555544
No 85
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=60.81 E-value=83 Score=31.34 Aligned_cols=56 Identities=7% Similarity=0.050 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005378 350 SSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEE 405 (699)
Q Consensus 350 ~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E 405 (699)
....+++.+...+..+++++..++..+...+-..=-..|+++...|++++++|..+
T Consensus 146 ~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq~~Ll~~ 201 (213)
T 1ik9_A 146 KENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLHNKLLNA 201 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33444555555666788888888888877777776677888888999999888653
No 86
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=58.01 E-value=83 Score=27.15 Aligned_cols=20 Identities=5% Similarity=-0.009 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005378 349 VSSIDALKKQAALSEGNLAS 368 (699)
Q Consensus 349 e~RL~~LeqeL~r~k~rLee 368 (699)
+.+...|..++..++.++.+
T Consensus 51 e~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 51 EARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444
No 87
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=57.69 E-value=1.7e+02 Score=29.95 Aligned_cols=9 Identities=33% Similarity=0.475 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 005378 462 CATLQQELQ 470 (699)
Q Consensus 462 l~qLkQeLq 470 (699)
.+.|++.|.
T Consensus 178 ~eeLr~~L~ 186 (273)
T 3s84_A 178 AEELRQRLA 186 (273)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444443
No 88
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=53.39 E-value=45 Score=29.60 Aligned_cols=65 Identities=20% Similarity=0.244 Sum_probs=33.8
Q ss_pred hhhhhHHHHHHHHHhhhhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 005378 248 KEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSE 326 (699)
Q Consensus 248 ~lqkQLeE~n~~LrsE~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~e 326 (699)
+.|..|......|..+++. +..-|...+..|.++...||. .+...+.|.++-.-|+.+|..-...
T Consensus 29 QVQqELs~tfarLc~~Vd~----------t~~eL~~EI~~L~~eI~~LE~----iqs~aK~LRnKA~~L~~eLe~F~~~ 93 (96)
T 1t3j_A 29 QVQQEMATTFARLCQQVDM----------TQKHLEEEIARLSKEIDQLEK----MQNNSKLLRNKAVQLESELENFSKQ 93 (96)
T ss_dssp ------CCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555553 344444444444444444444 2456667888888888888765443
No 89
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=52.71 E-value=1.1e+02 Score=26.24 Aligned_cols=32 Identities=9% Similarity=0.208 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 005378 347 TLVSSIDALKKQAALSEGNLASLQMNMESIMR 378 (699)
Q Consensus 347 eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e 378 (699)
+|..+|+.+..++..++..++...-++..+..
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433
No 90
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=51.08 E-value=1.2e+02 Score=26.26 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005378 348 LVSSIDALKKQAALSEGNLASLQ 370 (699)
Q Consensus 348 Le~RL~~LeqeL~r~k~rLeelq 370 (699)
+...|..++..+......+.+++
T Consensus 82 ie~~i~~le~~~~~l~~~l~~lk 104 (117)
T 2zqm_A 82 LEVRLNALERQEKKLNEKLKELT 104 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 91
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=50.27 E-value=1.1e+02 Score=26.12 Aligned_cols=57 Identities=12% Similarity=0.107 Sum_probs=33.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 512 LSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKA 570 (699)
Q Consensus 512 l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~ 570 (699)
|..++..|.+|..++..+...|..|. .....+. ++..|..++.+.+..|+.+..+=-
T Consensus 24 le~le~~Ie~LE~~i~~le~~ladp~-~y~~d~~-~~~~l~~~l~~~e~eLe~~~erWe 80 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQVADAS-FFSQPHE-QTQKVLADMAAAEQELEQAFERWE 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTT-GGGSCHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcc-cccCCHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666665555441 0122333 677777777777777777766543
No 92
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=49.79 E-value=3.2e+02 Score=30.68 Aligned_cols=27 Identities=11% Similarity=0.206 Sum_probs=9.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 005378 334 LAEALAAKNSEIETLVSSIDALKKQAA 360 (699)
Q Consensus 334 ~~eaLaak~sEi~eLe~RL~~LeqeL~ 360 (699)
+...|++-+...++-+..+.+-+.++.
T Consensus 71 Y~~dlakY~~~~AeY~~kl~aYe~~~~ 97 (497)
T 3iox_A 71 YQADLAKYQKDLADYPVKLKAYEDEQT 97 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 93
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=49.42 E-value=1.1e+02 Score=34.29 Aligned_cols=71 Identities=14% Similarity=0.147 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 005378 309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKN-------SEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRN 379 (699)
Q Consensus 309 Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~-------sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~ 379 (699)
|..+...++.+++.+|.+++.....+......++ .+.+.|..+...+..+++.++..+.++++++..+.-.
T Consensus 75 ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~ 152 (501)
T 1wle_A 75 TWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALR 152 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555666666666665554443222221 2455666666666666766666666666666655443
No 94
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=49.22 E-value=31 Score=32.09 Aligned_cols=96 Identities=17% Similarity=0.177 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 354 ALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMA 433 (699)
Q Consensus 354 ~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseA 433 (699)
.|-.++.....+|+++.-+++++.++.-..+.. ++.++.-++..+..|..+- ..|+=....+..+
T Consensus 6 SL~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~--------~~~~~~Elee~kqq~~~~~-------d~L~lQ~esmeaa 70 (130)
T 3cl3_D 6 GSLGELQESQSRLEAATKECQALEGRARAASEQ--------ARQLESEREALQQQHSVQV-------DQLRMQGQSVEAA 70 (130)
T ss_dssp -----------------------------------------------------CTTTHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 444556666667777777777777666555555 3333333333223333331 1112222334445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 005378 434 LARIQRIADERTAKAGELEQKVAMLEVECATLQQELQD 471 (699)
Q Consensus 434 La~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd 471 (699)
+..-+.+..+++++.+.|+ +.|..|-+++..
T Consensus 71 lkmEr~~~~eEKrkLAqLQ-------~AY~~LfqeYd~ 101 (130)
T 3cl3_D 71 LRMERQAASEEKRKLAQLQ-------VAYHQLFQEYDN 101 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 5544555555666555554 556555555543
No 95
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=49.11 E-value=1.3e+02 Score=25.87 Aligned_cols=62 Identities=11% Similarity=0.165 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhc
Q 005378 419 REVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ 480 (699)
Q Consensus 419 Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~q 480 (699)
|...+|........++..++..++.=..++..|+-++..+..++.+++++.-++-..+++..
T Consensus 7 rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~Rl 68 (83)
T 2xdj_A 7 RVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLS 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443333456677788888888888888888888888888888777766555554443
No 96
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=48.96 E-value=1.6e+02 Score=27.01 Aligned_cols=30 Identities=13% Similarity=0.267 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 005378 351 SIDALKKQAALSEGNLASLQMNMESIMRNR 380 (699)
Q Consensus 351 RL~~LeqeL~r~k~rLeelq~E~~~L~e~~ 380 (699)
+++.|+.++..++..|.++.++.++|....
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444444444444444444444444444433
No 97
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=48.87 E-value=1.4e+02 Score=26.36 Aligned_cols=24 Identities=8% Similarity=0.098 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 306 SRSYEARIKQLEQELSVYKSEVTK 329 (699)
Q Consensus 306 ~~~Lq~kl~qLQ~EL~~eQ~er~q 329 (699)
...|+.++.--..++..+|+.|..
T Consensus 42 i~vLk~Qv~IY~~DF~aERadREk 65 (94)
T 3jsv_C 42 VPVLKAQADIYKADFQAERHAREK 65 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455444444444
No 98
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=47.53 E-value=20 Score=40.64 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHH
Q 005378 346 ETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVE 399 (699)
Q Consensus 346 ~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ 399 (699)
..|...+..++.+...+...-.+++.++++|.......+++ ...|+.++..++
T Consensus 366 ~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e-~~~l~~~~~~~~ 418 (575)
T 2i1j_A 366 LRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAE-RQKLEDEIRAKQ 418 (575)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHH
Confidence 35555666666666666666666666666666655444333 444444444433
No 99
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=46.03 E-value=1.4e+02 Score=25.33 Aligned_cols=49 Identities=22% Similarity=0.302 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 286 QEYKSENAQLEELLVAERELS----RSYEARIKQLEQELSVYKSEVTKVESNL 334 (699)
Q Consensus 286 ~ELkke~aqLEe~l~elqek~----~~Lq~kl~qLQ~EL~~eQ~er~q~es~~ 334 (699)
+.++..++.||..+.++.... ..++..+..|+.+|...+.+....-.+|
T Consensus 4 ~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EY 56 (84)
T 1gk4_A 4 DALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREY 56 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666555543322 2444455555555555555544443333
No 100
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=45.36 E-value=2.1e+02 Score=27.28 Aligned_cols=105 Identities=12% Similarity=0.124 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--hh
Q 005378 308 SYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLV---SSIDALKKQAALSEGNLASLQMNMESIMRNR--EL 382 (699)
Q Consensus 308 ~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe---~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~--s~ 382 (699)
.|.+++...+.-...-|..+.+...+|..++...+.--..++ +.+..++..+.....++..++..+..|.=.. ..
T Consensus 24 qL~nrla~~~am~~sqqq~~eqlS~eFqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~L~P~~P~Ya 103 (158)
T 3tul_A 24 QLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDPADPGYA 103 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC--CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 344444444444444444455555555555555555555555 5666666666666666666666666554221 12
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 383 TETRMIQALREELASVERRAEEERAAHNAT 412 (699)
Q Consensus 383 ~Eke~lqSLE~eLkslQ~aLe~E~~aHk~T 412 (699)
......+.++.++.++.+.++--..+|-..
T Consensus 104 k~~a~~~q~~~d~~~~~~~~~kA~~A~~~a 133 (158)
T 3tul_A 104 QAEAAVEQAGKEATEAKEALDKATDATVKA 133 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556777777777777776544444333
No 101
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=44.99 E-value=75 Score=26.85 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005378 345 IETLVSSIDALKKQAALSEGNLA 367 (699)
Q Consensus 345 i~eLe~RL~~LeqeL~r~k~rLe 367 (699)
|.+|+.+|+..+.++..++..|.
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 102
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=44.57 E-value=80 Score=24.49 Aligned_cols=29 Identities=10% Similarity=0.158 Sum_probs=13.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 304 ELSRSYEARIKQLEQELSVYKSEVTKVES 332 (699)
Q Consensus 304 ek~~~Lq~kl~qLQ~EL~~eQ~er~q~es 332 (699)
+++..|+..+..||.-+.++-+++...+.
T Consensus 5 ekv~~Le~~ld~LqTr~ArLlae~~ssq~ 33 (46)
T 3swy_A 5 EKVEQLGSSLDTLQTRFARLLAEYNATQM 33 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555444444444433
No 103
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=43.44 E-value=67 Score=27.12 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=23.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 337 ALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESI 376 (699)
Q Consensus 337 aLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L 376 (699)
.|..+.++|.....+|..++.++......+.+++.+.+.+
T Consensus 27 ~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 27 ALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555666666666666666666666666665544
No 104
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=41.50 E-value=90 Score=23.95 Aligned_cols=42 Identities=26% Similarity=0.304 Sum_probs=25.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005378 279 AGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQEL 320 (699)
Q Consensus 279 aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL 320 (699)
+-|+|.++.|++-+-|||.--..+..-...|.+++..|+.+.
T Consensus 6 aylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 6 AYLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 346777788888888888743333444445555565555543
No 105
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=41.05 E-value=1.9e+02 Score=25.56 Aligned_cols=37 Identities=11% Similarity=0.309 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHH
Q 005378 491 IQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMA 527 (699)
Q Consensus 491 i~~leeEl~r~r~~~~~le~~l~~lE~elqkLr~e~~ 527 (699)
+.-+++.+...|...+.+..+...+..++..|..+..
T Consensus 49 v~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~ 85 (94)
T 3jsv_C 49 ADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFN 85 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4445666666666666666665666666666655543
No 106
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=40.82 E-value=1.7e+02 Score=25.01 Aligned_cols=29 Identities=10% Similarity=0.116 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 555 LYYKQTQLETMASEKAAAEFQLEKEMNRL 583 (699)
Q Consensus 555 L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a 583 (699)
|.+.....+.|...+..|..+|..+..++
T Consensus 58 l~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 58 MKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555666666666666666555443
No 107
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=40.47 E-value=1.4e+02 Score=25.46 Aligned_cols=16 Identities=6% Similarity=0.111 Sum_probs=7.9
Q ss_pred hhHHHHHHHHHhhhhc
Q 005378 251 DQLDEAQGLLKTTIST 266 (699)
Q Consensus 251 kQLeE~n~~LrsE~et 266 (699)
+.+.|.....++|.++
T Consensus 14 rrl~E~~~q~qaEl~s 29 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNA 29 (78)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHH
Confidence 3444455555555554
No 108
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=40.08 E-value=2.3e+02 Score=26.30 Aligned_cols=10 Identities=20% Similarity=0.209 Sum_probs=4.2
Q ss_pred HHHHHHhhhh
Q 005378 256 AQGLLKTTIS 265 (699)
Q Consensus 256 ~n~~LrsE~e 265 (699)
-|..|+.+.+
T Consensus 30 eN~~Lk~e~e 39 (155)
T 2oto_A 30 ENKDLKARLE 39 (155)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334444443
No 109
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=39.42 E-value=1.8e+02 Score=24.86 Aligned_cols=28 Identities=14% Similarity=0.063 Sum_probs=17.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 005378 280 GLSSRLQEYKSENAQLEELLVAERELSR 307 (699)
Q Consensus 280 RLrK~~~ELkke~aqLEe~l~elqek~~ 307 (699)
.||.++..+...+++++-.+..++....
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~e 31 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIM 31 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4666677777777777766555544443
No 110
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=38.88 E-value=1.8e+02 Score=24.77 Aligned_cols=14 Identities=14% Similarity=0.138 Sum_probs=3.2
Q ss_pred HHHHHHHHHHHHHH
Q 005378 347 TLVSSIDALKKQAA 360 (699)
Q Consensus 347 eLe~RL~~LeqeL~ 360 (699)
.++.|+..++++++
T Consensus 62 r~~~ri~elEeElk 75 (77)
T 2w83_C 62 KLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHC--------
T ss_pred HHHHHHHHHHHHHh
Confidence 45555555555544
No 111
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=38.67 E-value=1.2e+02 Score=33.79 Aligned_cols=71 Identities=11% Similarity=0.142 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 005378 308 SYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRN 379 (699)
Q Consensus 308 ~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~ 379 (699)
.|..+...++.+++.+|++++.....+... .+.....+.|..++..+..+++.++..+.+++.++..+.-.
T Consensus 37 ~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~-k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~ 107 (485)
T 3qne_A 37 AEYKEWVKLRFDLDEHNKKLNSVQKEIGKR-FKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQ 107 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444556666666777777777666544422 22223456677777777777877787777777777666544
No 112
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=38.43 E-value=1.9e+02 Score=28.99 Aligned_cols=64 Identities=11% Similarity=0.159 Sum_probs=32.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHH
Q 005378 338 LAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRA 402 (699)
Q Consensus 338 Laak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aL 402 (699)
+.+...++.+-+.||...+..+...+.++...+.+...|+.++..+..+ +...+..+..++..+
T Consensus 86 I~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~-vt~~et~Isal~~Dy 149 (242)
T 3c9i_A 86 IKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGR-VTTAENNISALQADY 149 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHB
T ss_pred hhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhccc-ccccccchhhhhhhh
Confidence 3334444444444555555555555555555555555555555555555 555555555555443
No 113
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=38.26 E-value=92 Score=34.04 Aligned_cols=17 Identities=24% Similarity=0.204 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005378 286 QEYKSENAQLEELLVAE 302 (699)
Q Consensus 286 ~ELkke~aqLEe~l~el 302 (699)
.-+.+....||..+.++
T Consensus 34 ~~V~~~l~~LE~~l~el 50 (409)
T 1m1j_C 34 LTTDGELLEIEGLLQQA 50 (409)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hcchhHHHHHHHHHHHH
Confidence 33334444444443333
No 114
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=38.00 E-value=1.5e+02 Score=25.13 Aligned_cols=30 Identities=13% Similarity=0.205 Sum_probs=15.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 303 RELSRSYEARIKQLEQELSVYKSEVTKVES 332 (699)
Q Consensus 303 qek~~~Lq~kl~qLQ~EL~~eQ~er~q~es 332 (699)
.+++..|+..+..||.-+.++-+++...+.
T Consensus 6 EEKv~~LE~sld~LQTrfARLLaEy~ssQ~ 35 (74)
T 3swf_A 6 EEKVTRMESSVDLLQTRFARILAEYESMQQ 35 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555554443
No 115
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=37.62 E-value=1.1e+02 Score=33.68 Aligned_cols=73 Identities=11% Similarity=0.206 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 005378 307 RSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR 380 (699)
Q Consensus 307 ~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~ 380 (699)
-.|..+...++.+++.+|.+++.....+.. +.+...+.+.|..+...+..+++.++..+.++++++..+.-.+
T Consensus 34 ~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 106 (455)
T 2dq0_A 34 LKLDTEWRTKLKEINRLRHERNKIAVEIGK-RRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRL 106 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344556666667777777777776665442 2222244566777777777777777777777777777665544
No 116
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=37.00 E-value=2.1e+02 Score=25.23 Aligned_cols=28 Identities=7% Similarity=0.162 Sum_probs=18.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 305 LSRSYEARIKQLEQELSVYKSEVTKVES 332 (699)
Q Consensus 305 k~~~Lq~kl~qLQ~EL~~eQ~er~q~es 332 (699)
+.+.|+.++..|+.++..+..++.-+..
T Consensus 16 RkkkL~~Ki~el~~ei~ke~~~regl~K 43 (98)
T 2ke4_A 16 QRKRLQQQLEERSRELQKEVDQREALKK 43 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777766655544
No 117
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=35.63 E-value=94 Score=27.03 Aligned_cols=62 Identities=19% Similarity=0.183 Sum_probs=36.4
Q ss_pred hhhhhHHHHHHHHHhhhhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005378 248 KEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARI 313 (699)
Q Consensus 248 ~lqkQLeE~n~~LrsE~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl 313 (699)
..|.++++....||.++. |+-.|-.=+.+|++..+..++...+++.+++....+...|..++
T Consensus 18 ~~q~~le~~r~~ir~eI~----KElKiKeGaENL~katt~~kk~~~~V~~eL~~sn~kl~~L~~eL 79 (86)
T 1cxz_B 18 GVQQQLELERERLRREIR----KELKLKEGAENLRRATTDLGRSLGPVELLLRGSSRRLDLLHQQL 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHhHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777765 44444445677777777766666666665444333333333333
No 118
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=35.52 E-value=1.1e+02 Score=33.37 Aligned_cols=68 Identities=21% Similarity=0.319 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 005378 308 SYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMR 378 (699)
Q Consensus 308 ~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e 378 (699)
.|..+...++.+++.+|.+++.....+.. +...+.+.|..++..+..+++.++..+.+++.++..+.-
T Consensus 32 ~~~~~~r~~~~~~~~l~~~~n~~sk~i~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (421)
T 1ses_A 32 ALDREVQELKKRLQEVQTERNQVAKRVPK---APPEEKEALIARGKALGEEAKRLEEALREKEARLEALLL 99 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSS---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666666666554332 122344555566666666666666666666666655443
No 119
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=34.90 E-value=2.5e+02 Score=25.10 Aligned_cols=26 Identities=12% Similarity=0.126 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 347 TLVSSIDALKKQAALSEGNLASLQMN 372 (699)
Q Consensus 347 eLe~RL~~LeqeL~r~k~rLeelq~E 372 (699)
.|..++..++..+...+.++..++..
T Consensus 99 ~l~~~~~~l~~~l~~l~~~i~~~~~~ 124 (133)
T 1fxk_C 99 ELESTLQKMGENLRAITDIMMKLSPQ 124 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 120
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=33.74 E-value=1.6e+02 Score=22.72 Aligned_cols=38 Identities=29% Similarity=0.337 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 388 IQALREELASVERRAEEERAAHNATKMAAMEREVELEH 425 (699)
Q Consensus 388 lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEe 425 (699)
+..++.-|..+|.++++-..+|..++..+..|...||.
T Consensus 7 v~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~ 44 (46)
T 3swy_A 7 VEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555556677777777777777777777777766663
No 121
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=33.71 E-value=1.2e+02 Score=28.31 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=24.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005378 279 AGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK 324 (699)
Q Consensus 279 aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ 324 (699)
.++.=.+.-|..+...+|..++-.+.+...-..++++||.+...+=
T Consensus 51 qq~~~~~d~L~lQ~esmeaalkmEr~~~~eEKrkLAqLQ~AY~~Lf 96 (130)
T 3cl3_D 51 QQHSVQVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVAYHQLF 96 (130)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555666555555554444455555555554433
No 122
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=31.66 E-value=2.8e+02 Score=24.72 Aligned_cols=54 Identities=22% Similarity=0.354 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 005378 324 KSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMR 378 (699)
Q Consensus 324 Q~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e 378 (699)
+.....+++ +...|+.+..++..++..++...+.=......+..++.++..|..
T Consensus 50 ~eq~~~le~-lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L~~ 103 (107)
T 2no2_A 50 QEQLEVLES-LKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSLVS 103 (107)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444443 444566666677777777777777777777777777777766654
No 123
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=30.50 E-value=49 Score=34.00 Aligned_cols=69 Identities=14% Similarity=0.160 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhc---chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 516 EAEVQKMRVEMAAMKRDAEHY---SREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 586 (699)
Q Consensus 516 E~elqkLr~e~~~lq~qleq~---~~~~~~ele~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~~~ 586 (699)
..++..|..++..+.+++.+. +.. ... +.++++|..++...+.+.+.|..+...+.-+|+++...++..
T Consensus 23 ~~~~~~~~~e~~~l~~~~~~~~~~~~~-~~~-~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 23 AAELEQLRREAAVLREQLENAVGSHAP-TRS-ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp ------------------------------C-CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhhhcccCccc-chh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555555555322 211 112 778999999999999999999999999999999887776554
No 124
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=30.01 E-value=1.6e+02 Score=23.15 Aligned_cols=34 Identities=15% Similarity=0.274 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 343 SEIETLVSSIDALKKQAALSEGNLASLQMNMESI 376 (699)
Q Consensus 343 sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L 376 (699)
.++..|..+...|...+...+..+.++.++.+.|
T Consensus 16 ~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 16 ARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444445555555555555544443
No 125
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=29.84 E-value=1.3e+02 Score=23.67 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005378 284 RLQEYKSENAQLEELLVAEREL 305 (699)
Q Consensus 284 ~~~ELkke~aqLEe~l~elqek 305 (699)
++..|...|..|.+.+++.++.
T Consensus 17 ~l~~L~~rN~rL~~~L~~AR~e 38 (51)
T 3m91_A 17 RIDSLAARNSKLMETLKEARQQ 38 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443333333
No 126
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=29.75 E-value=2.4e+02 Score=25.15 Aligned_cols=32 Identities=41% Similarity=0.472 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q 005378 447 KAGELEQKVAMLEVECATLQQELQDMEARLKR 478 (699)
Q Consensus 447 ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r 478 (699)
.+..|++++..|+.+...|++++..++.++.+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888999999999999999999988
No 127
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=29.61 E-value=1.9e+02 Score=24.39 Aligned_cols=48 Identities=21% Similarity=0.216 Sum_probs=23.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 005378 334 LAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRE 381 (699)
Q Consensus 334 ~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s 381 (699)
+++.|..++.+|..|+..+.--.+.++++...+=.+--|+.-|++++.
T Consensus 23 Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~ 70 (75)
T 3a7o_A 23 LQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLS 70 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHH
Confidence 334444555666666655555555555544444444444444444433
No 128
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=28.84 E-value=1.7e+02 Score=27.09 Aligned_cols=76 Identities=24% Similarity=0.292 Sum_probs=33.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhH-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 005378 280 GLSSRLQEYKSENAQLEELLVAERELSR-S--YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALK 356 (699)
Q Consensus 280 RLrK~~~ELkke~aqLEe~l~elqek~~-~--Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~Le 356 (699)
.|.+-++++.++.+.++..+..+.+-.. . -..-..-+|.+|...+.++..+ ++|+..++.++
T Consensus 10 ~l~~KvAElekkv~~lek~lk~~~e~d~e~y~ke~~~~~~qsele~k~aeLe~l---------------eeL~~ki~eL~ 74 (125)
T 2pms_C 10 APQAKIAELENQVHRLEQELKEIDESESEDYAKEGFRAPLQSKLDAKKAKLSKL---------------EELSDKIDELD 74 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTTCC------------CHHHHHHHHHHHHHHHH---------------HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHhHHHHHHHHHHHHHHHHH---------------HHHHhHHHHHH
Confidence 3445555566665555554443321111 0 0000122555555555555444 23555555555
Q ss_pred HHHHHHHHHHHHHH
Q 005378 357 KQAALSEGNLASLQ 370 (699)
Q Consensus 357 qeL~r~k~rLeelq 370 (699)
..+..++..++.++
T Consensus 75 ~kvA~le~e~~~~e 88 (125)
T 2pms_C 75 AEIAKLEDQLKAAE 88 (125)
T ss_dssp HHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555443
No 129
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=28.50 E-value=2.1e+02 Score=23.32 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=29.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005378 334 LAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIM 377 (699)
Q Consensus 334 ~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~ 377 (699)
...+|++-++-|..|..=...+.+++..+...+.+++.++..|.
T Consensus 18 vK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 18 LKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 34456666666667766666777777777777777777776653
No 130
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=28.41 E-value=80 Score=32.48 Aligned_cols=7 Identities=14% Similarity=-0.031 Sum_probs=2.7
Q ss_pred CCCCchh
Q 005378 243 DDPPTKE 249 (699)
Q Consensus 243 ~~k~~~l 249 (699)
.+-+-.+
T Consensus 57 Gq~L~~l 63 (369)
T 4dk0_A 57 GDLLAEI 63 (369)
T ss_dssp SCCCEEC
T ss_pred CCEEEEE
Confidence 3333333
No 131
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=28.28 E-value=1.4e+02 Score=30.25 Aligned_cols=44 Identities=16% Similarity=0.162 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 544 LEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ 587 (699)
Q Consensus 544 le~rl~eLte~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~a~~~~ 587 (699)
+-.|++.++..|...+..|+....|++|+..+|+....++-+.+
T Consensus 169 La~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~ 212 (228)
T 3q0x_A 169 LAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLR 212 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44589999999999999999999999999999999877665443
No 132
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=27.31 E-value=1.5e+02 Score=32.09 Aligned_cols=40 Identities=23% Similarity=0.169 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 290 SENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTK 329 (699)
Q Consensus 290 ke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q 329 (699)
.+...|+.++.+++++...++.++.+++.++..+...+.+
T Consensus 3 ~~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 42 (412)
T 3u06_A 3 SMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ 42 (412)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666555544433
No 133
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=27.26 E-value=3.4e+02 Score=24.33 Aligned_cols=80 Identities=13% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 364 GNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADE 443 (699)
Q Consensus 364 ~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEeenaelseALa~lQrkL~E 443 (699)
..|.++++--+.+|.....+-++ ++++-+++..|+-.+ ++. .++++.++|.+.+
T Consensus 2 dsL~EvEEKyrKAMVsnAQLDNE-Ksal~YqVdlLKD~L----------------------Ee~---eE~~aql~Re~~e 55 (103)
T 4h22_A 2 DSLAEVEEKYKKAMVSNAQLDNE-KTNFMYQVDTLKDML----------------------LEL---EEQLAESRRQYEE 55 (103)
T ss_dssp ------CCTHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH----------------------HHH---HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH----------------------HHH---HHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Q 005378 444 RTAKAGELEQKVAMLEVECATLQQEL 469 (699)
Q Consensus 444 Ek~ra~eLeqQ~smLe~dl~qLkQeL 469 (699)
..+.+.-+...+..|..++..++..|
T Consensus 56 K~re~e~~Kr~~~~L~~~~~~lk~~L 81 (103)
T 4h22_A 56 KNKEFEREKHAHSILQFQFAEVKEAL 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 134
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=27.19 E-value=6.9e+02 Score=27.85 Aligned_cols=17 Identities=24% Similarity=0.184 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005378 388 IQALREELASVERRAEE 404 (699)
Q Consensus 388 lqSLE~eLkslQ~aLe~ 404 (699)
+..+..+++.|+.....
T Consensus 141 l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 141 IQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444443
No 135
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=26.33 E-value=3e+02 Score=23.36 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 005378 346 ETLVSSIDALKKQAALSEGNLASLQMNMESIMRN 379 (699)
Q Consensus 346 ~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~ 379 (699)
..|..++..++..++.+...+..++..+..++..
T Consensus 68 ~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~ 101 (107)
T 1fxk_A 68 EELQEKLETLQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555554443
No 136
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=26.14 E-value=3.2e+02 Score=23.56 Aligned_cols=55 Identities=31% Similarity=0.334 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 005378 294 QLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI 352 (699)
Q Consensus 294 qLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL 352 (699)
.|=+.+++++-++..++++..+-+..|...++++..++ .+|.-+++++..|+..|
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq----~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQ----EQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH----HHHHhhHHHHHHHHHHH
Confidence 34444555666666777766666666666665555433 34555555555555443
No 137
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=25.86 E-value=2.7e+02 Score=22.68 Aligned_cols=70 Identities=10% Similarity=0.183 Sum_probs=36.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 005378 281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAA 360 (699)
Q Consensus 281 LrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~ 360 (699)
|.+.+.+++.+...+-..++.. .-.-++.++..|+..... ..+.+.....+|.+|...|++|+-++.
T Consensus 7 L~~il~eiRaQYE~ia~knr~E--aE~~y~~k~eel~~~~~~-----------~~~~l~~~k~Ei~elrr~iq~L~~el~ 73 (77)
T 3trt_A 7 CTAAMRDVRQQYESVAAKNLQE--AEEWYKSKFADLSEAANR-----------NNDALRQAKQESTEYRRQVQSLTMEVD 73 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666555544432 222333444444433222 222333445566677777777777766
Q ss_pred HHH
Q 005378 361 LSE 363 (699)
Q Consensus 361 r~k 363 (699)
.++
T Consensus 74 slk 76 (77)
T 3trt_A 74 ALK 76 (77)
T ss_dssp HHH
T ss_pred hhc
Confidence 554
No 138
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=25.44 E-value=21 Score=31.20 Aligned_cols=15 Identities=20% Similarity=0.494 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 005378 655 IILLFYLVFVHLFLM 669 (699)
Q Consensus 655 l~~l~Y~vlLHlWVm 669 (699)
|+|++.+++||+|-=
T Consensus 69 l~FIa~VilLHI~gK 83 (87)
T 2ww9_C 69 VGFIFSVIALHLLTK 83 (87)
T ss_dssp HHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhhh
Confidence 567788889999853
No 139
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=25.34 E-value=3.3e+02 Score=23.46 Aligned_cols=37 Identities=14% Similarity=0.206 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 005378 345 IETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRE 381 (699)
Q Consensus 345 i~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e~~s 381 (699)
+..|..++..++..++.+...+..++..+..++..+.
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555554443
No 140
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=25.32 E-value=2.6e+02 Score=22.40 Aligned_cols=28 Identities=21% Similarity=0.147 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005378 285 LQEYKSENAQLEELLVAERELSRSYEAR 312 (699)
Q Consensus 285 ~~ELkke~aqLEe~l~elqek~~~Lq~k 312 (699)
..++..+...|+..+.+|...+..|+.+
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433333333333
No 141
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=25.11 E-value=2.1e+02 Score=24.27 Aligned_cols=39 Identities=10% Similarity=0.117 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 388 IQALREELASVERRAEEERAAHNATKMAAMEREVELEHR 426 (699)
Q Consensus 388 lqSLE~eLkslQ~aLe~E~~aHk~Tk~ea~~Re~~LEee 426 (699)
+..|+.-|..+|.++.+-..+|..++..+..|...||..
T Consensus 9 v~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~ 47 (74)
T 3swf_A 9 VTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKF 47 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666666667777766666666666543
No 142
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=25.02 E-value=16 Score=32.54 Aligned_cols=14 Identities=7% Similarity=0.465 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHH
Q 005378 655 IILLFYLVFVHLFL 668 (699)
Q Consensus 655 l~~l~Y~vlLHlWV 668 (699)
++|++.+++||+|.
T Consensus 78 l~Fi~~Vi~Lhi~~ 91 (96)
T 2wwb_C 78 LLFIASVFMLHIWG 91 (96)
T ss_dssp HHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHhh
Confidence 56777788888874
No 143
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=25.01 E-value=7.9e+02 Score=27.82 Aligned_cols=180 Identities=11% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH---------
Q 005378 355 LKKQAALSEGNLASLQMNMESIMRNREL-TETRMIQALREELA-----------SVERRAEEERAAHNATK--------- 413 (699)
Q Consensus 355 LeqeL~r~k~rLeelq~E~~~L~e~~s~-~Eke~lqSLE~eLk-----------slQ~aLe~E~~aHk~Tk--------- 413 (699)
..+-....+..+......|.......-. .-..+...++..++ .....++.-...|...-
T Consensus 381 ~~~L~~~i~~~~~~~~~~N~~~s~~~C~~ll~~l~~~l~~~i~~g~~~~p~g~~~~~~~~~~~~~~Y~~~~~kg~~~~~v 460 (592)
T 1f5n_A 381 QKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEI 460 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHHHHHHHHHHHSSCCCTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHHHHHHhcCCcccHHHH
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHH
Q 005378 414 -MAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQ 492 (699)
Q Consensus 414 -~ea~~Re~~LEeenaelseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~r~qqk~~~~~~qei~ 492 (699)
.+|+.....+++.--....+|++.++.+.+++.+...++++..+|+...+.+.+-++.-+.....-. +
T Consensus 461 l~~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~-----------~ 529 (592)
T 1f5n_A 461 LQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHL-----------K 529 (592)
T ss_dssp HHHHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHHHHHHHHHH
Q 005378 493 AWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDL 554 (699)
Q Consensus 493 ~leeEl~r~r~~~~~le~~l~~lE~elqkLr~e~~~lq~qleq~~~~~~~ele~rl~eLte~ 554 (699)
+|.+.+++-+.... .+.-..|...+++-.+-+..-|......|..+|..|...
T Consensus 530 ql~~kme~~~~~~~---------~e~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 530 QLTEKMENDRVQLL---------KEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 144
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=24.84 E-value=3.5e+02 Score=24.35 Aligned_cols=16 Identities=19% Similarity=0.461 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 005378 388 IQALREELASVERRAE 403 (699)
Q Consensus 388 lqSLE~eLkslQ~aLe 403 (699)
..+++..|..+++.|.
T Consensus 84 Vsalq~KiaeLKrqLA 99 (107)
T 2k48_A 84 VSTLETKLGELKRQLA 99 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555666665554
No 145
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=24.45 E-value=1.3e+02 Score=25.49 Aligned_cols=40 Identities=18% Similarity=0.090 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005378 281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQEL 320 (699)
Q Consensus 281 LrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL 320 (699)
|..++.+|-...+-.|..+.+|.+.+..-+..+..|+..+
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql 51 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELI 51 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443333333333333333333
No 146
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=24.27 E-value=2.9e+02 Score=22.54 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=6.0
Q ss_pred hHHHHHHHHHHHHHH
Q 005378 306 SRSYEARIKQLEQEL 320 (699)
Q Consensus 306 ~~~Lq~kl~qLQ~EL 320 (699)
++.++.++..||.+-
T Consensus 43 lr~mQ~~lq~LQsen 57 (63)
T 2w6a_A 43 LRKLQREIHKLQAEN 57 (63)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 333344444444433
No 147
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=24.24 E-value=2.4e+02 Score=21.51 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005378 293 AQLEELLVAERELSRSYEARIKQLEQELSVYK 324 (699)
Q Consensus 293 aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ 324 (699)
..||...+++..+...|+.++..||.|--.+|
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLR 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34566556666666666666666666655544
No 148
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=24.02 E-value=1.8e+02 Score=22.11 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005378 346 ETLVSSIDALKKQAALSEGNLASLQMNMESIM 377 (699)
Q Consensus 346 ~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~ 377 (699)
.+|+.+...++.....++.+++.++.|+.-|-
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLR 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 45566666666666666666677776665554
No 149
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=22.77 E-value=74 Score=32.69 Aligned_cols=41 Identities=12% Similarity=0.216 Sum_probs=26.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 005378 338 LAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMR 378 (699)
Q Consensus 338 Laak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e 378 (699)
+..+..++..|..+...|...++.++..+.++..++++|+.
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33455556666666666666666777777777777666654
No 150
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=22.45 E-value=4.6e+02 Score=24.20 Aligned_cols=9 Identities=11% Similarity=-0.112 Sum_probs=4.0
Q ss_pred HHHHhhhhc
Q 005378 258 GLLKTTIST 266 (699)
Q Consensus 258 ~~LrsE~et 266 (699)
..|+.+.+.
T Consensus 25 ~~l~~eN~~ 33 (155)
T 2oto_A 25 IRLRHENKD 33 (155)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444443
No 151
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=22.26 E-value=4.6e+02 Score=25.27 Aligned_cols=46 Identities=17% Similarity=0.333 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 362 SEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAA 408 (699)
Q Consensus 362 ~k~rLeelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aLe~E~~a 408 (699)
++..+.....+++.|...-+-.+.. +..+-.++..++..+..++..
T Consensus 90 Lr~ql~akr~EL~aL~~a~~~Deak-I~aL~~Ei~~Lr~qL~~~R~k 135 (175)
T 3lay_A 90 LRQQLISKRYEYNALLTASSPDTAK-INAVAKEMESLGQKLDEQRVK 135 (175)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCCHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544444555 666777777777777655444
No 152
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=21.94 E-value=4.2e+02 Score=28.95 Aligned_cols=31 Identities=16% Similarity=0.186 Sum_probs=17.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005378 281 LSSRLQEYKSENAQLEELLVAERELSRSYEA 311 (699)
Q Consensus 281 LrK~~~ELkke~aqLEe~l~elqek~~~Lq~ 311 (699)
.++.+++|.....+++..-.+..+....|+.
T Consensus 36 V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~ 66 (411)
T 3ghg_C 36 VDKDLQSLEDILHQVENKTSEVKQLIKAIQL 66 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4455666666666666555555555555544
No 153
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=21.74 E-value=2.5e+02 Score=22.55 Aligned_cols=38 Identities=21% Similarity=0.255 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 005378 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMR 378 (699)
Q Consensus 341 k~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~e 378 (699)
+......|+.+...|..+...++..++.++.++..|..
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555555443
No 154
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=21.45 E-value=3e+02 Score=22.11 Aligned_cols=33 Identities=9% Similarity=0.144 Sum_probs=17.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 303 RELSRSYEARIKQLEQELSVYKSEVTKVESNLA 335 (699)
Q Consensus 303 qek~~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~ 335 (699)
++-...|+.+..++.+.|+.+|..|..++.-++
T Consensus 16 kDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vr 48 (56)
T 2w6b_A 16 KDEVQELRQDNKKMKKSLEEEQRARKDLEKLVR 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444555566666666666655333
No 155
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=21.21 E-value=4.3e+02 Score=23.40 Aligned_cols=49 Identities=20% Similarity=0.378 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 005378 429 EASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLK 477 (699)
Q Consensus 429 elseALa~lQrkL~EEk~ra~eLeqQ~smLe~dl~qLkQeLqd~e~~~~ 477 (699)
..-..+-.+.-.|..++....+-..++..|+-++..|+|+|++..-+.+
T Consensus 43 TCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~~~~~ 91 (99)
T 3ni0_A 43 SCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLRIQKE 91 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666677777777666677788888899999999988864443
No 156
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=20.29 E-value=4.7e+02 Score=29.05 Aligned_cols=23 Identities=4% Similarity=0.029 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005378 310 EARIKQLEQELSVYKSEVTKVES 332 (699)
Q Consensus 310 q~kl~qLQ~EL~~eQ~er~q~es 332 (699)
..+...++.+++.+|+.++....
T Consensus 43 d~~~r~~~~~~~~l~~~rN~~sk 65 (484)
T 3lss_A 43 DKKWRRTQFLTEASKKLINICSK 65 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555444
No 157
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=20.08 E-value=70 Score=23.64 Aligned_cols=16 Identities=25% Similarity=0.569 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHh
Q 005378 659 FYLVFVHLFLMYLLHR 674 (699)
Q Consensus 659 ~Y~vlLHlWVm~vL~~ 674 (699)
.|+.+|-++|+.|||+
T Consensus 17 Ly~GLLlifvlavlFs 32 (37)
T 3arc_L 17 LYLGLLLILVLALLFS 32 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 5888888889988885
Done!