Query 005378
Match_columns 699
No_of_seqs 165 out of 189
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 23:39:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005378.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005378hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1seta1 a.2.7.1 (A:1-110) Sery 67.2 15 0.0011 30.2 9.6 68 307-377 31-98 (110)
2 d1fxka_ a.2.5.1 (A:) Prefoldin 64.2 35 0.0026 27.9 12.3 29 348-376 70-98 (107)
3 d1fxka_ a.2.5.1 (A:) Prefoldin 61.3 40 0.0029 27.5 11.2 41 335-375 64-104 (107)
4 d1fxkc_ a.2.5.1 (C:) Prefoldin 58.5 48 0.0035 27.6 13.7 35 285-319 3-37 (133)
5 d1seta1 a.2.7.1 (A:1-110) Sery 47.4 45 0.0033 27.1 9.1 14 515-528 40-53 (110)
6 d2ap3a1 a.24.27.1 (A:12-196) H 43.5 75 0.0055 25.4 17.0 13 451-463 149-161 (185)
7 d1cxzb_ a.2.6.1 (B:) Protein k 33.2 54 0.0039 26.5 6.9 62 249-314 19-80 (86)
8 d2axtt1 f.23.34.1 (T:1-30) Pho 31.1 18 0.0013 23.5 2.8 23 656-678 6-28 (30)
9 d1f5na1 a.114.1.1 (A:284-583) 27.1 2.1E+02 0.015 25.6 16.2 148 251-402 151-300 (300)
10 d1qvra2 c.37.1.20 (A:149-535) 26.5 2.5E+02 0.019 27.4 12.5 17 173-189 147-163 (387)
No 1
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=67.18 E-value=15 Score=30.20 Aligned_cols=68 Identities=21% Similarity=0.319 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005378 307 RSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIM 377 (699)
Q Consensus 307 ~~Lq~kl~qLQ~EL~~eQ~er~q~es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~L~ 377 (699)
-.|..+...++.+++.+|+++......+.. .+.+....+..+...+..++..++..+..++.+...+.
T Consensus 31 ~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k---~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~l 98 (110)
T d1seta1 31 LALDREVQELKKRLQEVQTERNQVAKRVPK---APPEEKEALIARGKALGEEAKRLEEALREKEARLEALL 98 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHGGG---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777777776554431 23344555556666666666666666666666555543
No 2
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=64.22 E-value=35 Score=27.86 Aligned_cols=29 Identities=10% Similarity=0.209 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 348 LVSSIDALKKQAALSEGNLASLQMNMESI 376 (699)
Q Consensus 348 Le~RL~~LeqeL~r~k~rLeelq~E~~~L 376 (699)
|..+++.++..++++...+..++.++..+
T Consensus 70 l~~~~e~l~~~i~~l~~q~~~l~~~l~~~ 98 (107)
T d1fxka_ 70 LQEKLETLQLREKTIERQEERVMKKLQEM 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333433333333333333333
No 3
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=61.34 E-value=40 Score=27.51 Aligned_cols=41 Identities=20% Similarity=0.258 Sum_probs=23.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 335 AEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMES 375 (699)
Q Consensus 335 ~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rLeelq~E~~~ 375 (699)
.+........++-+..++..++..+......+.+++...+.
T Consensus 64 ~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l~~ 104 (107)
T d1fxka_ 64 DELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555566666666666666666666666655443
No 4
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=58.48 E-value=48 Score=27.58 Aligned_cols=35 Identities=17% Similarity=0.105 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005378 285 LQEYKSENAQLEELLVAERELSRSYEARIKQLEQE 319 (699)
Q Consensus 285 ~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~E 319 (699)
+++|......+++.+..++.....++..+..++..
T Consensus 3 L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~ 37 (133)
T d1fxkc_ 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEIL 37 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555554444444444433
No 5
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=47.39 E-value=45 Score=27.12 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 005378 515 LEAEVQKMRVEMAA 528 (699)
Q Consensus 515 lE~elqkLr~e~~~ 528 (699)
+..++..|+.+...
T Consensus 40 l~~~~e~l~~~rN~ 53 (110)
T d1seta1 40 LKKRLQEVQTERNQ 53 (110)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444333
No 6
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=43.48 E-value=75 Score=25.40 Aligned_cols=13 Identities=15% Similarity=0.268 Sum_probs=4.6
Q ss_pred HHHHHhhhHHHHH
Q 005378 451 LEQKVAMLEVECA 463 (699)
Q Consensus 451 LeqQ~smLe~dl~ 463 (699)
+..++..++..+.
T Consensus 149 l~~~~~~l~~~~~ 161 (185)
T d2ap3a1 149 VNEKSKAIEQNYK 161 (185)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 7
>d1cxzb_ a.2.6.1 (B:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.19 E-value=54 Score=26.55 Aligned_cols=62 Identities=19% Similarity=0.197 Sum_probs=35.3
Q ss_pred hhhhHHHHHHHHHhhhhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005378 249 EQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIK 314 (699)
Q Consensus 249 lqkQLeE~n~~LrsE~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~ 314 (699)
.+.+|++....||.++. ||-.|-.=+.+|++..+.-++..++++..++.--.++..|..++.
T Consensus 19 ~q~~le~~r~~lr~eI~----KELKIKeGAENL~~attd~kk~~~~V~~eL~~sN~kL~~L~~eL~ 80 (86)
T d1cxzb_ 19 VQQQLELERERLRREIR----KELKLKEGAENLRRATTDLGRSLGPVELLLRGSSRRLDLLHQQLQ 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHhHHHhHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777765 444444456777777665555566666654443333333333333
No 8
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=31.12 E-value=18 Score=23.49 Aligned_cols=23 Identities=13% Similarity=0.452 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc
Q 005378 656 ILLFYLVFVHLFLMYLLHRLQEQ 678 (699)
Q Consensus 656 ~~l~Y~vlLHlWVm~vL~~~~~~ 678 (699)
.+++|.+++-|+.|.|+|+-.|.
T Consensus 6 yv~ifac~i~lfffaiffreppr 28 (30)
T d2axtt1 6 YVFIFACIIALFFFAIFFREPPR 28 (30)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCC
T ss_pred hHHHHHHHHHHHHHHHHhcCCCC
Confidence 46677778888888898886663
No 9
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.11 E-value=2.1e+02 Score=25.58 Aligned_cols=148 Identities=8% Similarity=0.061 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhhhhccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005378 251 DQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKV 330 (699)
Q Consensus 251 kQLeE~n~~LrsE~etl~~ke~qLa~~~aRLrK~~~ELkke~aqLEe~l~elqek~~~Lq~kl~qLQ~EL~~eQ~er~q~ 330 (699)
....+....++.+....-.+-.........+.+....+.....+.+..+..........+.....++.....++..+...
T Consensus 151 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 230 (300)
T d1f5na1 151 RLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKN 230 (300)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHH
Q 005378 331 ESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNL--ASLQMNMESIMRNRELTETRMIQALREELASVERRA 402 (699)
Q Consensus 331 es~~~eaLaak~sEi~eLe~RL~~LeqeL~r~k~rL--eelq~E~~~L~e~~s~~Eke~lqSLE~eLkslQ~aL 402 (699)
+..+..........+..+..++..-...+.....+. ..+......+...+...... ++.++..++..+
T Consensus 231 ~~~~e~~~~~~ee~~~~l~~~~e~e~~~~~~e~~~~~~~~~~e~~~~~~~~~~~~~~~----l~~ei~~Lk~~l 300 (300)
T d1f5na1 231 EQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRI----MKNEIQDLQTKM 300 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH----HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhcC
No 10
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=26.53 E-value=2.5e+02 Score=27.42 Aligned_cols=17 Identities=18% Similarity=0.429 Sum_probs=7.9
Q ss_pred CCCcccccccCCCcccc
Q 005378 173 LPPKEMGIVNEDRIDDA 189 (699)
Q Consensus 173 ~~~~~~~~~~~~~~~~~ 189 (699)
|.--++.++-.-.|-.-
T Consensus 147 L~rg~~~~I~~tT~~ey 163 (387)
T d1qvra2 147 LARGELRLIGATTLDEY 163 (387)
T ss_dssp HHTTCCCEEEEECHHHH
T ss_pred HhCCCcceeeecCHHHH
Confidence 44445555554444333
Done!