BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005380
(699 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O74326|CID11_SCHPO Poly(A) RNA polymerase cid11 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cid11 PE=3 SV=1
Length = 478
Score = 205 bits (522), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 114/315 (36%), Positives = 186/315 (59%), Gaps = 21/315 (6%)
Query: 384 IYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARL--YLYGSCANSFGVSKSDIDVCLAI 441
+Y L P+ EE +++++ + L ++ E DA+L +++GS N+ + +SD+DVC+
Sbjct: 54 LYMRLKPSNEEVSRRQQFVDKLRTILSTEIKDAKLDLFVFGSTENNLAIQQSDVDVCIIT 113
Query: 442 NDSEINKSEVLLKLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVN 501
N S+ S +LA +L S ++ + ++RARVPIVK+ DP I CD+ INN +A +N
Sbjct: 114 NGSKYLNSTC--QLAQLLYSYGMKQIVCVSRARVPIVKIWDPQFDIHCDLNINNDVAKIN 171
Query: 502 TKLLRDYAQIDVRLQQLAFIVKHWAKSRGV-NVTYQGTLSSYAYVLMCIHFLQQRRPAIL 560
TK+LR + ID R++ L I+K+WAK R + + GT++SY M ++FLQ R P IL
Sbjct: 172 TKMLRLFVSIDPRVRPLGLIIKYWAKQRALCDAAGSGTITSYTISCMLVNFLQTRNPPIL 231
Query: 561 PCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSR---NKESIGRLVWAFFNYWAYGHDYA 617
P + + ++ DD + VD + GF + NK S+GRL+ FF Y+ + +Y
Sbjct: 232 PAMLDL-----MSNDDNKMF----VDDIVGFKEKATLNKTSLGRLLIDFFYYYGFSFNYL 282
Query: 618 SNVISVRTGSTISKQEKDWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFER 677
+V+SVR+G+ ++KQEK W + N +C+E+PF +L D S+K L+ EF+R
Sbjct: 283 DSVVSVRSGTVLNKQEKGWAMEVNNS---LCVEEPFNTARNLANTADNPSVKGLQSEFQR 339
Query: 678 AAEIMQHDPNPCVKL 692
A +M + N C +L
Sbjct: 340 AFRLMSEN-NACERL 353
>sp|Q9UT49|CID13_SCHPO Poly(A) RNA polymerase cid13 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cid13 PE=1 SV=1
Length = 578
Score = 190 bits (483), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 182/320 (56%), Gaps = 10/320 (3%)
Query: 373 DIGRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWP--DARLYLYGSCANSFGV 430
D +++ +Y+S+I + ++ + LE+++ KE+P + + L+GS +
Sbjct: 47 DTDLISSQLYELYDSIILNDSGLERRYAFVQKLEQILKKEFPYKNIKTSLFGSTQSLLAS 106
Query: 431 SKSDIDVCLAINDSEINKSEVLLKLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCD 490
+ SDID+C+ + + + + A + L+ V ++ A+VPIVK+ D +SCD
Sbjct: 107 NASDIDLCIITDPPQCAPTTCEVSAA--FARNGLKKVVCISTAKVPIVKVWDSELQLSCD 164
Query: 491 ICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQG-TLSSYAYVLMCI 549
IN ++ +NT+L+R Y D R++ L ++K+WAK R +N +G TL+SY M I
Sbjct: 165 CNINKTISTLNTRLMRSYVLCDPRVRPLIVMIKYWAKRRCLNDAAEGGTLTSYTISCMVI 224
Query: 550 HFLQQRRPAILPCLQGME--KTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFF 607
+FLQ+R P ILP LQ + + S D ++ ++FD D +HGFG +N+ES+G L FF
Sbjct: 225 NFLQKRDPPILPSLQMLPHLQDSSTMTDGLDVSFFDDPDLVHGFGDKNEESLGILFVEFF 284
Query: 608 NYWAYGHDYASNVISVRTGSTISKQEKDWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFS 667
++ Y DY V+S+R G+ +SK+ K W ++ N +C+E+PF + +L D+ +
Sbjct: 285 RFFGYLFDYEHFVLSIRHGTFLSKRAKGWQFQLNN---FLCVEEPFHTSRNLANTADEIT 341
Query: 668 IKVLREEFERAAEIMQHDPN 687
+K ++ EF R ++ ++ N
Sbjct: 342 MKGIQLEFRRVFRLLAYNCN 361
>sp|Q5VYS8|TUT7_HUMAN Terminal uridylyltransferase 7 OS=Homo sapiens GN=ZCCHC6 PE=1 SV=1
Length = 1495
Score = 179 bits (453), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 102/295 (34%), Positives = 167/295 (56%), Gaps = 17/295 (5%)
Query: 377 LNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDID 436
L+ + Y+ P E ++ + LE + +++P +L L+GS N FG +SD+D
Sbjct: 1001 LDQVCIQCYKDFSPTIIEDQAREHIRQNLESFIRQDFPGTKLSLFGSSKNGFGFKQSDLD 1060
Query: 437 VCLAINDSE----INKSEVLLKLADILQSDN-LQNVQALTRARVPIVKLMDPVTGISCDI 491
VC+ IN E ++ + +LA +L+ + L+N+ +T A+VPIVK +G+ DI
Sbjct: 1061 VCMTINGLETAEGLDCVRTIEELARVLRKHSGLRNILPITTAKVPIVKFFHLRSGLEVDI 1120
Query: 492 CINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHF 551
+ N LA+ NT+LL Y+ ID R++ L + +K + K + +G+LSSYAY LM ++F
Sbjct: 1121 SLYNTLALHNTRLLSAYSAIDPRVKYLCYTMKVFTKMCDIGDASRGSLSSYAYTLMVLYF 1180
Query: 552 LQQRRPAILPCLQGM---EKTYSVTVDDIECAYFDQVDKLHGFGS---RNKESIGRLVWA 605
LQQR P ++P LQ + EK + VD +FDQ+D+L + S +N ES+G+L
Sbjct: 1181 LQQRNPPVIPVLQEIYKGEKKPEIFVDGWNIYFFDQIDELPTYWSECGKNTESVGQLWLG 1240
Query: 606 FFNYWAYGHDYASNVISVRTGSTISKQEKDWTRRIGNDRHLICIEDPFEVTHDLG 660
++ D+ +VIS+R S ++ +K WT + I IEDPF++ H+LG
Sbjct: 1241 LLRFYTEEFDFKEHVISIRRKSLLTTFKKQWTSK------YIVIEDPFDLNHNLG 1289
Score = 107 bits (266), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/296 (26%), Positives = 135/296 (45%), Gaps = 42/296 (14%)
Query: 404 LLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLADILQ-SD 462
++E + + PD L LYGS + G SD+++ + + +++ +VLL + + L+ SD
Sbjct: 322 IMENVFQHKLPDCSLRLYGSSCSRLGFKNSDVNIDIQF-PAIMSQPDVLLLVQECLKNSD 380
Query: 463 NLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIV 522
+ +V A ARVP+V + +G+ C + N A + TK L +++ +L L
Sbjct: 381 SFIDVDADFHARVPVVVCREKQSGLLCKVSAGNENACLTTKHLTALGKLEPKLVPLVIAF 440
Query: 523 KHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQG-------MEKTYSVTVD 575
++WAK ++ +G L Y + LM I FLQQR+ +LP G + K + +
Sbjct: 441 RYWAKLCSIDRPEEGGLPPYVFALMAIFFLQQRKEPLLPVYLGSWIEGFSLSKLGNFNLQ 500
Query: 576 DIE--CAYFDQVDKLHGFGSRNKES-------------------------IGRLVWAFFN 608
DIE ++ D G KE +G+L
Sbjct: 501 DIEKDVVIWEHTDSAAGDTGITKEEAPRETPIKRGQVSLILDVKHQPSVPVGQLWVELLR 560
Query: 609 YWAYGHDYASNVISVRTGSTISKQEKDWTRRIGNDRHLICIEDPFEVTHDLGRVVD 664
++A + A VIS+R +S++ KDW ++ I IEDP+ V ++ R ++
Sbjct: 561 FYALEFNLADLVISIRVKELVSRELKDWPKK------RIAIEDPYSVKRNVARTLN 610
>sp|Q5TAX3|TUT4_HUMAN Terminal uridylyltransferase 4 OS=Homo sapiens GN=ZCCHC11 PE=1 SV=3
Length = 1644
Score = 178 bits (451), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 106/304 (34%), Positives = 170/304 (55%), Gaps = 20/304 (6%)
Query: 385 YESLIPAEEEKAKQKKLLTLLEKLVCKEWPD-ARLYLYGSCANSFGVSKSDIDVCLAI-- 441
++ L P E+ ++++L LEK + KE+ + ARL L+GS N FG SD+D+C+ +
Sbjct: 959 FDELSPPCSEQHNREQILIGLEKFIQKEYDEKARLCLFGSSKNGFGFRDSDLDICMTLEG 1018
Query: 442 --NDSEINKSEVLLKLADILQSD-NLQNVQALTRARVPIVKLMDPVTGISCDICINNLLA 498
N ++N E++ LA IL+ L+N+ +T A+VPIVK +G+ DI + N LA
Sbjct: 1019 HENAEKLNCKEIIENLAKILKRHPGLRNILPITTAKVPIVKFEHRRSGLEGDISLYNTLA 1078
Query: 499 VVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPA 558
NT++L YA ID R+Q L + +K +AK + +G+LSSYAY+LM ++FLQQR+P
Sbjct: 1079 QHNTRMLATYAAIDPRVQYLGYTMKVFAKRCDIGDASRGSLSSYAYILMVLYFLQQRKPP 1138
Query: 559 ILPCLQGM---EKTYSVTVDDIECAYFDQVDKLH----GFGSRNKESIGRLVWAFFNYWA 611
++P LQ + ++ VD +FD+ ++L G +N ES+G L ++
Sbjct: 1139 VIPVLQEIFDGKQIPQRMVDGWNAFFFDKTEELKKRLPSLG-KNTESLGELWLGLLRFYT 1197
Query: 612 YGHDYASNVISVRTGSTISKQEKDWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVL 671
D+ VIS+R ++ EK WT + I IEDPF++ H+LG V + +
Sbjct: 1198 EEFDFKEYVISIRQKKLLTTFEKQWTSKC------IAIEDPFDLNHNLGAGVSRKMTNFI 1251
Query: 672 REEF 675
+ F
Sbjct: 1252 MKAF 1255
Score = 104 bits (259), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/320 (24%), Positives = 142/320 (44%), Gaps = 60/320 (18%)
Query: 398 QKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLAD 457
+++++ + K++ P+ L LYGS F + SD+++ + ++N ++L+K+
Sbjct: 376 RQEIVEEMSKVITTFLPECSLRLYGSSLTRFALKSSDVNIDIKF-PPKMNHPDLLIKVLG 434
Query: 458 ILQSDNLQ-NVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQ 516
IL+ + L +V++ A+VP+V D +G+ C + N +A + T LL +I+
Sbjct: 435 ILKKNVLYVDVESDFHAKVPVVVCRDRKSGLLCRVSAGNDMACLTTDLLTALGKIEPVFI 494
Query: 517 QLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQG--MEKTYSVTV 574
L ++WAK ++ G + SY + LM + FLQQR+P +LPCL G +E +
Sbjct: 495 PLVLAFRYWAKLCYIDSQTDGGIPSYCFALMVMFFLQQRKPPLLPCLLGSWIEGFDPKRM 554
Query: 575 DDI-------------EC----------------AYFDQ----------------VDKLH 589
DD EC A DQ + + H
Sbjct: 555 DDFQLKGIVEEKFVKWECNSSSATEKNSIAEENKAKADQPKDDTKKTETDNQSNAMKEKH 614
Query: 590 G-----FGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISKQEKDWTRRIGNDR 644
G + N+ S+G+L ++ VI VR ++++ K+W +R
Sbjct: 615 GKSPLALETPNRVSLGQLWLELLKFYTLDFALEEYVICVRIQDILTRENKNWPKR----- 669
Query: 645 HLICIEDPFEVTHDLGRVVD 664
I IEDPF V ++ R ++
Sbjct: 670 -RIAIEDPFSVKRNVARSLN 688
>sp|B2RX14|TUT4_MOUSE Terminal uridylyltransferase 4 OS=Mus musculus GN=Zcchc11 PE=1 SV=2
Length = 1644
Score = 178 bits (451), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 106/304 (34%), Positives = 170/304 (55%), Gaps = 20/304 (6%)
Query: 385 YESLIPAEEEKAKQKKLLTLLEKLVCKEWPD-ARLYLYGSCANSFGVSKSDIDVCLAI-- 441
++ L P E+ ++++L LEK + KE+ + ARL L+GS N FG SD+D+C+ +
Sbjct: 976 FDELSPPCSEQHNREQILIGLEKFIQKEYDEKARLCLFGSSKNGFGFRDSDLDICMTLEG 1035
Query: 442 --NDSEINKSEVLLKLADILQSD-NLQNVQALTRARVPIVKLMDPVTGISCDICINNLLA 498
N ++N E++ LA IL+ L+N+ +T A+VPIVK +G+ DI + N LA
Sbjct: 1036 HENAEKLNCKEIIENLAKILKRHPGLRNILPITTAKVPIVKFEHRRSGLEGDISLYNTLA 1095
Query: 499 VVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPA 558
NT++L YA ID R+Q L + +K +AK + +G+LSSYAY+LM ++FLQQR+P
Sbjct: 1096 QHNTRMLATYAAIDPRVQYLGYTMKVFAKRCDIGDASRGSLSSYAYILMVLYFLQQRKPP 1155
Query: 559 ILPCLQGM---EKTYSVTVDDIECAYFDQVDKLH----GFGSRNKESIGRLVWAFFNYWA 611
++P LQ + ++ VD +FD+ ++L G +N ES+G L ++
Sbjct: 1156 VIPVLQEIFDGKQIPQRMVDGWNAFFFDKTEELKKRLPSLG-KNTESLGELWLGLLRFYT 1214
Query: 612 YGHDYASNVISVRTGSTISKQEKDWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVL 671
D+ VIS+R ++ EK WT + I IEDPF++ H+LG V + +
Sbjct: 1215 EEFDFKEYVISIRQKKLLTTFEKQWTSKC------IAIEDPFDLNHNLGAGVSRKMTNFI 1268
Query: 672 REEF 675
+ F
Sbjct: 1269 MKAF 1272
Score = 89.7 bits (221), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 86/162 (53%), Gaps = 2/162 (1%)
Query: 405 LEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLADILQSDNL 464
+ K++ P+ L LYGS F + SD+++ + ++N ++L+++ IL+ L
Sbjct: 403 MSKVIMTFLPECSLRLYGSSLTKFALKSSDVNIDIKF-PPKMNHPDLLIQVLGILKKSAL 461
Query: 465 Q-NVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVK 523
+V++ A+VP+V D + + C + N +A + T LL +++ L +
Sbjct: 462 YIDVESDFHAKVPVVVCKDRKSALLCRVSAGNDMACLTTDLLAALGKVEPVFTPLVLAFR 521
Query: 524 HWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQG 565
+WAK ++ G + SY + LM + FLQQR+P +LPCL G
Sbjct: 522 YWAKLCYIDSQTDGGIPSYCFALMVMFFLQQRKPPLLPCLLG 563
>sp|O13833|CID1_SCHPO Poly(A) RNA polymerase protein cid1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=cid1 PE=1 SV=2
Length = 405
Score = 173 bits (438), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 175/329 (53%), Gaps = 22/329 (6%)
Query: 384 IYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAIND 443
+Y + +++E +++ L L + + PDA L +GS + + SD+D+C+ + D
Sbjct: 51 VYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLM-D 109
Query: 444 SEINKSEVLLKLADILQSDNLQNVQALTRARVPIVKLMDPV-----TGISCDICINNLLA 498
S + + L+ + L ++ + + L RAR+PI+KL CDI NN LA
Sbjct: 110 SRVQSDTIALQFYEELIAEGFEG-KFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLA 168
Query: 499 VVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFL-QQRRP 557
+ NT LL Y ++D RL+ + +VKHWAK + +N Y GTLSSY YVLM +++L +P
Sbjct: 169 IHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKP 228
Query: 558 AILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYA 617
+ P L VD + + D+++ + S+N S+G L+ FF ++AY +
Sbjct: 229 PVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIP--PSQNYSSLGSLLHGFFRFYAYKFEPR 286
Query: 618 SNVISVRT-GSTISKQEKDWTR---------RIGNDRHLICIEDPFEVTHDLGRVVDKFS 667
V++ R ++KQEK WT +I DR+++ IEDPFE++H++GR V
Sbjct: 287 EKVVTFRRPDGYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSG 346
Query: 668 IKVLREEFERAAEIM--QHDPNPCVKLFE 694
+ +R EF A+ ++ + P P LFE
Sbjct: 347 LYRIRGEFMAASRLLNSRSYPIPYDSLFE 375
>sp|Q5BLK4|TUT7_MOUSE Terminal uridylyltransferase 7 OS=Mus musculus GN=Zcchc6 PE=1 SV=3
Length = 1491
Score = 173 bits (438), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 166/296 (56%), Gaps = 19/296 (6%)
Query: 377 LNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDID 436
L+ + Y+ P E ++ + LE + +++P +L L+GS N FG +SD+D
Sbjct: 997 LDQVCVQCYKDFSPTIVEDQAREHIRQNLESFIKQDFPGTKLSLFGSSKNGFGFKQSDLD 1056
Query: 437 VCLAINDSE----INKSEVLLKLADILQSDN-LQNVQALTRARVPIVKLMDPVTGISCDI 491
VC+ IN E ++ + +LA +L+ + L+N+ +T A+VPIVK +G+ DI
Sbjct: 1057 VCMTINGHETAEGLDCVRTIEELARVLRKHSGLRNILPITTAKVPIVKFFHLRSGLEVDI 1116
Query: 492 CINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHF 551
+ N LA+ NT+LL Y+ ID R++ L + +K + K + +G+LSSYAY LM ++F
Sbjct: 1117 SLYNTLALHNTRLLSAYSAIDPRVKYLCYTMKVFTKMCDIGDASRGSLSSYAYTLMVLYF 1176
Query: 552 LQQRRPAILPCLQGM---EKTYSVTVDDIECAYFDQVDKLHG----FGSRNKESIGRLVW 604
LQQR P ++P LQ + EK + VD +FDQ+++L +G +N E +G+L
Sbjct: 1177 LQQRSPPVIPVLQEIYKGEKKPEILVDGWNIYFFDQINELPTCWPEYG-KNTEPVGQLWL 1235
Query: 605 AFFNYWAYGHDYASNVISVRTGSTISKQEKDWTRRIGNDRHLICIEDPFEVTHDLG 660
++ D+ +VIS+R S ++ +K WT + I IEDPF++ H+LG
Sbjct: 1236 GLLRFYTEEFDFKEHVISIRRKSLLTTFKKQWTSK------YIVIEDPFDLNHNLG 1285
Score = 110 bits (274), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 137/296 (46%), Gaps = 42/296 (14%)
Query: 404 LLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLADILQ-SD 462
++E + + PD L LYGS + G SD+++ + + +++ +VLL + + L+ SD
Sbjct: 322 VMESVFRHKLPDCSLRLYGSSCSRLGFRDSDVNIDVQF-PAVMSQPDVLLLVQECLKNSD 380
Query: 463 NLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIV 522
+ +V A ARVP+V D +G+ C + N A + TK L +++ RL L
Sbjct: 381 SFIDVDADFHARVPVVVCRDKQSGLLCKVSAGNENAWLTTKHLTALGKLEPRLVPLVIAF 440
Query: 523 KHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQG-------MEKTYSVTVD 575
++WAK ++ +G L Y + LM + FLQQR+ +LP G + K + ++
Sbjct: 441 RYWAKLCSIDRPEEGGLPPYVFALMAVFFLQQRKEPLLPVYLGSWIEEFSLNKLGNFSLK 500
Query: 576 DIE--CAYFDQVDKLHGFGSRNKES-------------------------IGRLVWAFFN 608
D+E ++ D G S KE +G+L
Sbjct: 501 DVEKDSVVWEYTDNSTGDTSSAKEEAPKETAAKKGQVPLTFNIKHQPSVPVGQLWVELLR 560
Query: 609 YWAYGHDYASNVISVRTGSTISKQEKDWTRRIGNDRHLICIEDPFEVTHDLGRVVD 664
++A + A VIS+R IS++ KDW ++ I IEDP+ V ++ R ++
Sbjct: 561 FYALEFNLADLVISIRVKELISRESKDWPKK------RIAIEDPYSVKRNVARTLN 610
>sp|Q6DFA8|GLD2B_XENLA Poly(A) RNA polymerase GLD2-B OS=Xenopus laevis GN=papd4-b PE=1
SV=1
Length = 509
Score = 162 bits (409), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 161/309 (52%), Gaps = 42/309 (13%)
Query: 395 KAKQKKLLTLLEKLVCKE---------WPDARLYLYGSCANSFGVSKSDIDVCLAINDSE 445
+A Q+++ L +K +C+ +P +RLYL GS N FG+ SD D+CL + +
Sbjct: 192 QALQQQVCDLKKKDICRAELQREIQQIFPQSRLYLVGSSLNGFGIRSSDADLCLVLKEEP 251
Query: 446 INKSEVLLKLADILQSDNLQNVQAL-----TRARVPIVKLMDPVTGISCDICINNLLAVV 500
+N++ + +L + + RA+VPIVK D V+G D+ +NN++ +
Sbjct: 252 MNQNTEARHILSLLHKHFYTRLSYIERPQFIRAKVPIVKFRDKVSGAEFDLNVNNVVGIR 311
Query: 501 NTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAIL 560
NT LLR YA +D R++ L ++K WA G+N +GTLSSY VLM +H+LQ IL
Sbjct: 312 NTFLLRTYAYLDKRVRPLVLVIKKWANHHGINDASRGTLSSYTIVLMVLHYLQTLPEPIL 371
Query: 561 PCLQGMEKTYSVTVDDIECAYFDQVDKLH----------GFGSRNKESIGRLVWAFFNYW 610
P LQ K Y EC FD+ +LH F S+N+ +G L+ F Y+
Sbjct: 372 PSLQ---KKYP------EC--FDRTMQLHLVHQAPRNIPQFLSKNETPLGDLLLGFLKYF 420
Query: 611 AYGHDYASNVISVRTGSTISKQEK-DWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIK 669
A D++ ++IS+R + + + +W + IC+E+PF+ ++ V +K
Sbjct: 421 AVEFDWSKDIISLREAKALPRTDDYEWRNKY------ICVEEPFDGSNTARAVYEKQKFD 474
Query: 670 VLREEFERA 678
++R EF +A
Sbjct: 475 LIRAEFLKA 483
>sp|Q0VFA3|GLD2_XENTR Poly(A) RNA polymerase GLD2 OS=Xenopus tropicalis GN=papd4 PE=2
SV=1
Length = 528
Score = 159 bits (403), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 158/309 (51%), Gaps = 42/309 (13%)
Query: 395 KAKQKKLLTLLEKLVCKE---------WPDARLYLYGSCANSFGVSKSDIDVCLAINDSE 445
+A Q+++ L +K +C+ +P +RLYL GS N FG SD D+CL + D
Sbjct: 211 QALQQQVCDLKKKDICRAELQREIQQIFPQSRLYLVGSSLNGFGTRSSDADLCLVLKDEP 270
Query: 446 INKSEVLLKLADILQSDNLQNVQALTR-----ARVPIVKLMDPVTGISCDICINNLLAVV 500
+N+ + +L + + R A+VPIVK D V+G D+ +NN++ +
Sbjct: 271 MNQHTEARHILSLLHKHFYTRLSYIERPQFIKAKVPIVKFRDKVSGAEFDLNVNNVVGIR 330
Query: 501 NTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAIL 560
NT LLR YA I+ R++ L ++K WA G+N +GTLSSY VLM +H+LQ I+
Sbjct: 331 NTFLLRTYAYIENRVRPLVLVIKMWANYHGLNDASRGTLSSYTLVLMALHYLQTLPEPII 390
Query: 561 PCLQGMEKTYSVTVDDIECAYFDQVDKLH----------GFGSRNKESIGRLVWAFFNYW 610
P LQ K Y EC FD +LH + S+N+ +G L+ F Y+
Sbjct: 391 PSLQ---KKYP------EC--FDSTMQLHLVHHAPRNIPKYLSKNETPLGDLLLGFLKYF 439
Query: 611 AYGHDYASNVISVRTGSTISKQEK-DWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIK 669
A D++ ++ISVR + + + +W + IC+E+P++ T+ V ++
Sbjct: 440 AIEFDWSKDIISVREAKALPRSDDYEWRNK------FICVEEPYDRTNTARAVYERQKFD 493
Query: 670 VLREEFERA 678
++R EF RA
Sbjct: 494 MIRAEFLRA 502
>sp|Q641A1|GLD2A_XENLA Poly(A) RNA polymerase GLD2-A OS=Xenopus laevis GN=papd4-a PE=1
SV=1
Length = 509
Score = 159 bits (401), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 101/296 (34%), Positives = 161/296 (54%), Gaps = 31/296 (10%)
Query: 405 LEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINK---SEVLLKLADILQS 461
L++ + + +P +RLYL GS N FG SD D+CL + + +N+ + +L L L
Sbjct: 211 LQREIQQIFPQSRLYLVGSSLNGFGTRISDADLCLVLKEEPMNQHTEATQILGLLHKLFY 270
Query: 462 DNLQNVQAL--TRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLA 519
L ++ L RA+VPIVK D V+G D+ +NN++ + NT LLR YA ++ R++ L
Sbjct: 271 TRLSYIERLQFIRAKVPIVKFRDKVSGAEFDLNVNNVVGIRNTFLLRTYAYLESRVRPLV 330
Query: 520 FIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIEC 579
++K WA G+N +GTLSSY VLM +H+LQ ILP LQ K Y EC
Sbjct: 331 LVIKKWANHHGINDASRGTLSSYTLVLMVLHYLQTLPEPILPSLQ---KKYP------EC 381
Query: 580 AYFD---QVDKLHG-------FGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTI 629
FD Q++ +H + S+N+ +G L+ F Y+A D++ ++ISVR G +
Sbjct: 382 --FDLSMQLNLVHHAPRNIPPYLSKNETPLGDLLLGFLKYFAVEFDWSKDIISVREGKAL 439
Query: 630 SKQEKDWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQHD 685
+ + D+ R IC+E+PF+ T+ V ++ ++R EF +A ++ D
Sbjct: 440 PRSD-DYLWR----NKYICVEEPFDGTNTARAVYERQKFDMIRAEFLKAWGALRDD 490
>sp|Q503I9|GLD2_DANRE Poly(A) RNA polymerase GLD2 OS=Danio rerio GN=papd4 PE=2 SV=1
Length = 489
Score = 155 bits (393), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 98/316 (31%), Positives = 159/316 (50%), Gaps = 18/316 (5%)
Query: 376 RLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDI 435
+L+ L ++ + ++ K++ L+ + K +P A+++L GS N FG SD
Sbjct: 161 KLSQQILNLFFACEQQSDDLEKKESCRAALQTDIQKIFPCAKVFLGGSSLNGFGSRSSDA 220
Query: 436 DVCLAINDSEINKSE----VLLKLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDI 491
D+CL I + +N + VL + +L + L RA+VPIVK D ++G+ D+
Sbjct: 221 DLCLVIEEGPVNHRKDAVYVLSLVRKLLYKLSYIEKPQLIRAKVPIVKFRDRISGVEFDL 280
Query: 492 CINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHF 551
NN + + NT LLR YA ++ R++ L ++K WA +N +GTLSSY VLM +H+
Sbjct: 281 NFNNTVGIRNTFLLRTYAFVEKRVRPLVLVIKKWANHHCINDASRGTLSSYTLVLMVLHY 340
Query: 552 LQQRRPAILPCLQGMEKTYSVTVD---DIECAYFDQVDKLHGFGSRNKESIGRLVWAFFN 608
LQ ++PCLQ + Y D DI D + F SRN+ S+G L F
Sbjct: 341 LQTLPEPVIPCLQ---RDYPTCFDPKMDIHLVPSGPSD-IPAFVSRNQSSLGDLFLGFLR 396
Query: 609 YWAYGHDYASNVISVRTGSTISKQE-KDWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFS 667
Y+A + VISVR T+ K K+W + IC+E+PF T+ V ++
Sbjct: 397 YYATVFKWDKQVISVRMARTLPKSNCKEWKDK------FICVEEPFNRTNTARAVHERMK 450
Query: 668 IKVLREEFERAAEIMQ 683
+ ++ F + ++Q
Sbjct: 451 FEAIKAAFIESHRLLQ 466
>sp|Q91YI6|GLD2_MOUSE Poly(A) RNA polymerase GLD2 OS=Mus musculus GN=Papd4 PE=1 SV=1
Length = 484
Score = 142 bits (359), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 91/322 (28%), Positives = 165/322 (51%), Gaps = 34/322 (10%)
Query: 376 RLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDI 435
+L+ L ++E+ + K++ L++ + +P +RL+L GS N FG SD
Sbjct: 155 KLSQQILELFETCQQQASDLKKKELCRAQLQREIQLLFPQSRLFLVGSSLNGFGARSSDG 214
Query: 436 DVCLAINDS----EINKSEVLLKLADILQSDNLQNVQA------LTRARVPIVKLMDPVT 485
D+CL + + ++N+ + ++ + L RA+VPIVK D V+
Sbjct: 215 DLCLVVKEEPCFFQVNQKTEARHILTLVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVS 274
Query: 486 GISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYV 545
+ D+ +NN + + NT LLR YA ++ R++ L ++K WA +N +GTLSSY+ V
Sbjct: 275 CVEFDLNVNNTVGIRNTFLLRTYAYLENRVRPLVLVIKKWASHHDINDASRGTLSSYSLV 334
Query: 546 LMCIHFLQQRRPAILPCLQGM-EKTYSVTVDDIECAYFDQVDKLHG-------FGSRNKE 597
LM +H+LQ ILP LQ + +++S +V Q+ +H + S+N+
Sbjct: 335 LMVLHYLQTLPEPILPSLQKIYPESFSTSV---------QLHLVHHAPCNVPPYLSKNES 385
Query: 598 SIGRLVWAFFNYWAYGHDYASNVISVRTGSTISK-QEKDWTRRIGNDRHLICIEDPFEVT 656
S+G L+ F Y+A D+ + +ISVR I + + +W + IC+E+PF+ T
Sbjct: 386 SLGDLLLGFLKYYATEFDWNTQMISVREAKAIPRPDDMEWRNK------YICVEEPFDGT 439
Query: 657 HDLGRVVDKFSIKVLREEFERA 678
+ V +K +++++F ++
Sbjct: 440 NTARAVHEKQKFDMIKDQFLKS 461
>sp|Q5U315|GLD2_RAT Poly(A) RNA polymerase GLD2 OS=Rattus norvegicus GN=Papd4 PE=2 SV=1
Length = 484
Score = 142 bits (358), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 91/322 (28%), Positives = 165/322 (51%), Gaps = 34/322 (10%)
Query: 376 RLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDI 435
+L+ L ++E+ + K++ L++ + +P +RL+L GS N FG SD
Sbjct: 155 KLSQQILELFETCQQQASDLKKKELCRAQLQREIQLLFPQSRLFLVGSSLNGFGARSSDG 214
Query: 436 DVCLAINDS----EINKSEVLLKLADILQSDNLQNVQA------LTRARVPIVKLMDPVT 485
D+CL + + ++N+ + ++ + L RA+VPIVK D V+
Sbjct: 215 DLCLVVKEEPCFFQVNQKTEARHILTLVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVS 274
Query: 486 GISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYV 545
+ D+ +NN + + NT LLR YA ++ R++ L ++K WA +N +GTLSSY+ V
Sbjct: 275 CVEFDLNVNNTVGIRNTFLLRTYAYLENRVRPLVLVIKKWASHHEINDASRGTLSSYSLV 334
Query: 546 LMCIHFLQQRRPAILPCLQGM-EKTYSVTVDDIECAYFDQVDKLHG-------FGSRNKE 597
LM +H+LQ ILP LQ + +++S +V Q+ +H + S+N+
Sbjct: 335 LMVLHYLQTLPEPILPSLQKIYPESFSTSV---------QLHLVHHAPCNVPPYLSKNES 385
Query: 598 SIGRLVWAFFNYWAYGHDYASNVISVRTGSTISK-QEKDWTRRIGNDRHLICIEDPFEVT 656
S+G L+ F Y+A D+ + +ISVR I + + +W + IC+E+PF+ T
Sbjct: 386 SLGDLLLGFLKYYATEFDWNTQMISVREAKAIPRPDDMEWRNK------YICVEEPFDGT 439
Query: 657 HDLGRVVDKFSIKVLREEFERA 678
+ V +K +++++F ++
Sbjct: 440 NTARAVHEKQKFDMIKDQFLKS 461
>sp|Q9VD44|GLD2A_DROME Poly(A) RNA polymerase gld-2 homolog A OS=Drosophila melanogaster
GN=Gld2 PE=1 SV=3
Length = 1364
Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/306 (28%), Positives = 151/306 (49%), Gaps = 13/306 (4%)
Query: 382 LAIYESLIPAEEEKAKQK---KLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVC 438
L++++ + +++ + K +L + + K +P LYL GS + FG SD+D+C
Sbjct: 938 LSVWKKFLESQQTRHVYKIKMRLWRAIYTVAMKNYPRYGLYLVGSSISYFGSKCSDMDIC 997
Query: 439 LAIN-----DSEINKSEVLLKLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDICI 493
+ DS + L + ++L N+ L ARVPI++ D + DI
Sbjct: 998 MLACTNPNIDSRMEAVYHLHVMKELLGRTNMFQDFNLIEARVPILRFTDRCHKVEVDINF 1057
Query: 494 NNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQ 553
NN + + NT LL Y+Q+D R++ +A VK WA+ +N T+SSY+ +LM IHFLQ
Sbjct: 1058 NNSVGIRNTHLLYCYSQLDWRVRPMALTVKQWAQYHNINNAKNMTISSYSLMLMVIHFLQ 1117
Query: 554 -QRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAY 612
P +LPCL + + + Y D + + + S N +++G L+ +F +Y++
Sbjct: 1118 VGASPPVLPCLHNLYPEKFGLLQPNDFGYVDMNEVMAPYQSDNSQTLGDLLLSFLHYYSV 1177
Query: 613 GHDYASNVISVRTGSTISKQEKDWTRRIGNDRHL---ICIEDPFEVTHDLGRVVDKFSIK 669
DY IS+R G + + ND H +CIE+PF+ T+ V D + +
Sbjct: 1178 -FDYGKYAISIRVGGVLPIEVCRAATAPKNDIHQWNELCIEEPFDQTNTARSVYDTDTFE 1236
Query: 670 VLREEF 675
++ F
Sbjct: 1237 RIKTIF 1242
>sp|Q6PIY7|GLD2_HUMAN Poly(A) RNA polymerase GLD2 OS=Homo sapiens GN=PAPD4 PE=1 SV=1
Length = 484
Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 163/316 (51%), Gaps = 22/316 (6%)
Query: 376 RLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDI 435
+L+ L ++E+ + K++ T L++ + +P +RL+L GS N FG SD
Sbjct: 155 KLSQQILELFETCQQQISDLKKKELCRTQLQREIQLLFPQSRLFLVGSSLNGFGTRSSDG 214
Query: 436 DVCLAINDS----EINKSEVLLKLADILQSDNLQNVQA------LTRARVPIVKLMDPVT 485
D+CL + + ++N+ + ++ + L RA+VPIVK D V+
Sbjct: 215 DLCLVVKEEPCFFQVNQKTEARHILTLVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVS 274
Query: 486 GISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYV 545
+ D+ +NN++ + NT LLR YA ++ R++ L ++K WA +N +GTLSSY+ V
Sbjct: 275 CVEFDLNVNNIVGIRNTFLLRTYAYLENRVRPLVLVIKKWASHHQINDASRGTLSSYSLV 334
Query: 546 LMCIHFLQQRRPAILPCLQGMEKTYSVTVD-DIECAYFDQVD-KLHGFGSRNKESIGRLV 603
LM +H+LQ ILP LQ K Y + I+ Q + + S+N+ ++G L+
Sbjct: 335 LMVLHYLQTLPEPILPSLQ---KIYPESFSPAIQLHLVHQAPCNVPPYLSKNESNLGDLL 391
Query: 604 WAFFNYWAYGHDYASNVISVRTGSTISKQEK-DWTRRIGNDRHLICIEDPFEVTHDLGRV 662
F Y+A D+ S +ISVR I + + +W + IC+E+PF+ T+ V
Sbjct: 392 LGFLKYYATEFDWNSQMISVREAKAIPRPDGIEWRNK------YICVEEPFDGTNTARAV 445
Query: 663 VDKFSIKVLREEFERA 678
+K +++++F ++
Sbjct: 446 HEKQKFDMIKDQFLKS 461
>sp|Q2HJ44|GLD2_BOVIN Poly(A) RNA polymerase GLD2 OS=Bos taurus GN=PAPD4 PE=2 SV=1
Length = 484
Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 163/316 (51%), Gaps = 22/316 (6%)
Query: 376 RLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDI 435
+L+ L ++E+ + K++ T L++ + +P +RL+L GS N FG SD
Sbjct: 155 KLSQQILELFEACQQQVSDLKKKELCRTELQREIQLLFPQSRLFLVGSSLNGFGTRSSDG 214
Query: 436 DVCLAINDS----EINKSEVLLKLADILQSDNLQNVQA------LTRARVPIVKLMDPVT 485
D+CL + + ++N+ + ++ + L RA+VPIVK D V+
Sbjct: 215 DLCLVVKEEPCFFQVNQKTEARHILTLVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVS 274
Query: 486 GISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYV 545
+ D+ +NN++ + NT LLR YA ++ R++ L ++K WA +N +GTLSSY+ V
Sbjct: 275 CVEFDLNVNNIVGIRNTFLLRTYAYLENRVRPLVLVIKKWASHHDINDASRGTLSSYSLV 334
Query: 546 LMCIHFLQQRRPAILPCLQGMEKTYSVTVD-DIECAYFDQVD-KLHGFGSRNKESIGRLV 603
LM +H+LQ ILP +Q K Y + I+ Q + + S+N+ ++G L+
Sbjct: 335 LMVLHYLQTLPEPILPSIQ---KIYPESFSPSIQLHLVHQAPCNVPPYLSKNESNLGDLL 391
Query: 604 WAFFNYWAYGHDYASNVISVRTGSTISKQEK-DWTRRIGNDRHLICIEDPFEVTHDLGRV 662
F Y+A D+ S +ISVR I + + +W + IC+E+PF+ T+ V
Sbjct: 392 LGFLKYYATEFDWNSQMISVREAKAIPRPDGIEWRNK------YICVEEPFDGTNTARAV 445
Query: 663 VDKFSIKVLREEFERA 678
+K +++++F ++
Sbjct: 446 HEKQKFDMIKDQFLKS 461
>sp|O17087|GLD2_CAEEL Poly(A) RNA polymerase gld-2 OS=Caenorhabditis elegans GN=gld-2
PE=1 SV=2
Length = 1113
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 94/355 (26%), Positives = 162/355 (45%), Gaps = 55/355 (15%)
Query: 385 YESLIPAEEEKAKQK-KLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAIND 443
Y + + +E ++K L +L + +P + LY+ GS N FG + SD+D+CL I +
Sbjct: 556 YHNKVSQTDEMLQRKLHLRDMLYTAISPVFPLSGLYVVGSSLNGFGNNSSDMDLCLMITN 615
Query: 444 SEI---NKSEVLLKLA-DILQSDNLQNVQALTRARVPIVKL--MDPVTGISCDICINNLL 497
++ N + V+L L LQ + Q L A+VPI+++ P I+ D+ NN +
Sbjct: 616 KDLDQKNDAVVVLNLILSTLQYEKFVESQKLILAKVPILRINFAAPFDDITVDLNANNSV 675
Query: 498 AVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRP 557
A+ NT LL Y+ D R++ L +VK WAK +G+N + + +SY+ VLM IHFLQ
Sbjct: 676 AIRNTHLLCYYSSYDWRVRPLVSVVKEWAKRKGINDANKSSFTSYSLVLMVIHFLQCGPT 735
Query: 558 AILPCL-QGMEKTYSVTVD----DIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAY 612
+LP L Q +S VD ++ A + D + S K ++G L+ F +Y+A
Sbjct: 736 KVLPNLQQSYPNRFSNKVDVRTLNVTMALEEVADDIDQSLSE-KTTLGELLIGFLDYYAN 794
Query: 613 GHDYASNVISVRTGSTISKQEKDWTRRIGNDRH--------------------------- 645
+Y + IS+R G + + +I ++
Sbjct: 795 EFNYDRDAISIRQGRRVERAALAVRPKIHSNSEGDKETPPPSSSASTSSIHNGGTPGIPM 854
Query: 646 ---------------LICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQHD 685
+CIE+PF ++ + D+ + +++ F A +QH+
Sbjct: 855 HHSISNPHFWRSQWRCVCIEEPFTNSNTAHSIYDEMVFEAIKKAFREAHGELQHN 909
>sp|Q9VYS4|GLD2B_DROME Poly(A) RNA polymerase gld-2 homolog B OS=Drosophila melanogaster
GN=wisp PE=1 SV=1
Length = 1373
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 139/292 (47%), Gaps = 28/292 (9%)
Query: 417 RLYLYGSCANSFGVSKSDIDVCL------------------AINDSEINKSEVLLKLADI 458
R+ L GS FG SDID+CL N+ +L +
Sbjct: 1012 RICLVGSTITGFGTDSSDIDMCLLPEQGVHPHQHQYHQHHHFHNEKRTEALIILTLFNAV 1071
Query: 459 LQSDNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQL 518
L+ + L ARVPI++ D GI D+ NN + + NT LL+ YAQ+D R + L
Sbjct: 1072 LKDTEVFQDFNLIEARVPILRFKDISNGIEVDLNFNNCVGIKNTYLLQLYAQMDWRTRPL 1131
Query: 519 AFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQR-RPAILPCLQGM--EKTYSVTVD 575
IVK WA+ +N + T+SSY+ VLM +H+LQ P +LPCL + EK +
Sbjct: 1132 VVIVKLWAQYHDINDAKRMTISSYSLVLMVLHYLQHACVPHVLPCLHSLYPEK---FQLG 1188
Query: 576 DIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISKQEKD 635
+C D ++ + + + N +++G + FF Y++ D+ + IS+RTG +
Sbjct: 1189 QQDCLDLDLIEPIEPYQALNTQTLGEHLLGFFKYYS-TFDFRNFAISIRTGGVLPVSTCR 1247
Query: 636 WTRRIGNDRHL---ICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQH 684
+ ND + + IE+PF++++ V D + + ++ F +A + H
Sbjct: 1248 MAKSPKNDVYQWKELNIEEPFDLSNTARSVYDGPTFERVKAVFLISARRLDH 1299
>sp|Q4KMD7|STPAP_DANRE Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Danio
rerio GN=tut1 PE=2 SV=1
Length = 797
Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 96/354 (27%), Positives = 168/354 (47%), Gaps = 50/354 (14%)
Query: 322 DDESELKNDTHERNDKKHRNS--RDKEIRSDNRGKRLLSQRMRNL-KWQIE-CRADIGRL 377
D ++ L H+ N K R KE + +RGK+ + +L K E C+A +
Sbjct: 102 DVQTTLAQPQHQLNGLKLRVKPREKKEFKLASRGKQDCKNTLISLDKLNFELCKA--MSV 159
Query: 378 NAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDV 437
N + ESL + EK + L+ LL+++ + +PD ++ +GS N+FG+ D+D+
Sbjct: 160 NEQIQKVVESLELKDNEKKVRDLLVQLLQEVFTEFFPDCQIVPFGSSVNTFGLHSCDLDL 219
Query: 438 CLAINDSEI----------------------------------NKSEVLLKLADILQS-- 461
L + ++++ + +E+L +A IL+
Sbjct: 220 FLDLENTKVFQARAKSSEQTGENQSEDCRSEDSILSDIDLSTASPAEILELVAVILRKCV 279
Query: 462 DNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFI 521
+ VQAL+ AR+P+VK + DI INN LAV NTK L+ + ID RL+ L +
Sbjct: 280 PGVHKVQALSTARLPVVKFSHKELNLQGDITINNRLAVRNTKFLQLCSGIDSRLRPLVYT 339
Query: 522 VKHWAKSRGVNVTYQG---TLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIE 578
++ WAK + + G L++YA L+ I FLQ R P +LP + + K + ++
Sbjct: 340 IRLWAKQKQLAGNLSGPGPLLNNYALTLLVIFFLQNRDPPVLPSVNQL-KNMACEEEECA 398
Query: 579 CAYFDQVDKLHGFG---SRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTI 629
+D F S+N E + L++ FF +++ D+ ++V+S+R G +
Sbjct: 399 IEEWDCTFPSQPFSVPPSKNTEDLCTLLFGFFTFYS-KFDFPASVVSLRDGHVL 451
>sp|O13798|CID16_SCHPO Caffeine-induced protein 16 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=cid16 PE=4 SV=1
Length = 1202
Score = 109 bits (272), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 141/283 (49%), Gaps = 27/283 (9%)
Query: 416 ARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLADILQS---DNLQNVQALTR 472
++ +GS SD+D L I S+ E LL D ++S + NV +
Sbjct: 922 VKIACFGSYRTGLMTKNSDLD--LVIYSSK----EALLPYYDRVKSIIKNEFSNVMPIRG 975
Query: 473 ARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVN 532
AR+PI+K I CD+ +NLL + N+ L+ +Y+ ID R++ L +VK+WA +R ++
Sbjct: 976 ARIPIIKFTGQY-NIHCDLSFDNLLPIHNSDLILNYSLIDERVKTLLMLVKYWASNRLID 1034
Query: 533 VTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDD-----IECAYFDQVDK 587
T+ SSY + +M I +LQQ ILP LQ + YS V D + C + +
Sbjct: 1035 KTHHAFPSSYTWCIMVIFYLQQIPEPILPNLQKLSTQYSKIVRDNDYGNVNCWFNRDTEC 1094
Query: 588 LHGFGSRNKESIGRLVWAFFNYWA----YGHDYASNVISVRTGSTISKQEKDWTRRIGND 643
G + +++I L+ FF Y+ Y D+ + +I + + S + ++ ++ D
Sbjct: 1095 YRGSMQKGRKNIALLLRGFFCYYGLTTQYSFDWEAYMIDI-SSSQLKRKSTEF-----KD 1148
Query: 644 RHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQHDP 686
+ + DPF +L + + + S+KV+R E ERA I+ DP
Sbjct: 1149 CPFVVL-DPFLKKKNLTKALTQKSVKVVRYELERACRILS-DP 1189
>sp|Q9NVV4|PAPD1_HUMAN Poly(A) RNA polymerase, mitochondrial OS=Homo sapiens GN=MTPAP PE=1
SV=1
Length = 582
Score = 102 bits (255), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 149/325 (45%), Gaps = 45/325 (13%)
Query: 393 EEKAKQKKL-LTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSE------ 445
EE K + L +L+E + +PD + +GS N+FG D+D+ L ++++
Sbjct: 201 EENTKLRYLTCSLIEDMAAAYFPDCIVRPFGSSVNTFGKLGCDLDMFLDLDETRNLSAHK 260
Query: 446 ------------------INKSEVLLKLADILQ--SDNLQNVQALTRARVPIVKLMDPVT 485
I ++L L + L VQ + AR P+V+ +
Sbjct: 261 ISGNFLMEFQVKNVPSERIATQKILSVLGECLDHFGPGCVGVQKILNARCPLVRFSHQAS 320
Query: 486 GISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGT-LSSYAY 544
G CD+ NN +A+ +++LL Y +D R++ L F V+ WA++ + + G +++++
Sbjct: 321 GFQCDLTTNNRIALTSSELLYIYGALDSRVRALVFSVRCWARAHSLTSSIPGAWITNFSL 380
Query: 545 VLMCIHFLQQRRPAILPCLQGMEKTY----SVTVDDIECAYFDQVDKLHGFGSRNKESIG 600
+M I FLQ+R P ILP L ++ ++ C + + ++ S+N E++
Sbjct: 381 TMMVIFFLQRRSPPILPTLDSLKTLADAEDKCVIEGNNCTFVRDLSRIK--PSQNTETLE 438
Query: 601 RLVWAFFNYWAYGHDYASNVISVRTGSTISKQEKDWTRRIGNDRHLICIEDPFEVTHDLG 660
L+ FF Y+ + N I++R G +K D + I++PFE + ++
Sbjct: 439 LLLKEFFEYFG-NFAFDKNSINIRQGREQNKP----------DSSPLYIQNPFETSLNIS 487
Query: 661 RVVDKFSIKVLREEFERAAEIMQHD 685
+ V + ++ + +A I+Q +
Sbjct: 488 KNVSQSQLQKFVDLARESAWILQQE 512
>sp|Q9UTN3|CID14_SCHPO Poly(A) RNA polymerase cid14 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cid14 PE=1 SV=2
Length = 684
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 93/399 (23%), Positives = 177/399 (44%), Gaps = 60/399 (15%)
Query: 289 LGLDKR--RENGPGYSQGGDDMDDFGEDLVDSLLPDDESELKNDTHERNDKKHRNSRDK- 345
LG+ KR R+ P + + ++ DF + D +DE + ND + N+ ++S+++
Sbjct: 132 LGIPKREGRKTNPVHDKAVENNSDFIK--FDWNSDEDEDSVSNDKSKNNESLKKSSKNEI 189
Query: 346 ---------------EIRSDNRGKRLLSQRM--RNLKW--QIECRADIGRL-NAPFLAIY 385
E NR ++ + + ++ W Q + ++ R+ + L
Sbjct: 190 PGFMRQRGRFFHEANEKSDSNRKRKRQAYELDSQSCPWHRQYKVEREVSRIFHQDILHFI 249
Query: 386 ESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSE 445
+ + P EE A +K L++ + + V ++WPD LY++GS + SD+D+ + +
Sbjct: 250 DYITPTPEEHAVRKTLVSRINQAVLQKWPDVSLYVFGSFETKLYLPTSDLDLVIISPEHH 309
Query: 446 INKSEV-LLKLADILQSDNLQN-VQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTK 503
++ + LA L+ L + VQ +T A VPI+K +DP+T + DI N +
Sbjct: 310 YRGTKKDMFVLAHHLKKLKLASEVQVITTANVPIIKFVDPLTKVHVDISFNQPGGLKTCL 369
Query: 504 LLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCL 563
++ + + L+ L I+KH+ R +N + G LSSYA V + + FLQ + P
Sbjct: 370 VVNGFMKKYPALRPLVIIIKHFLNMRALNEVFLGGLSSYAIVCLVVSFLQ-----LHP-- 422
Query: 564 QGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISV 623
+L R +++ G L+ F + Y + I+V
Sbjct: 423 -----------------------RLSTGSMREEDNFGVLLLEFLELYGKQFYYDAVGIAV 459
Query: 624 RTGS-TISKQEKDWTRRIGNDRHLICIEDPFEVTHDLGR 661
G SK++ W + N +L+ I+DP + +D+ +
Sbjct: 460 HNGGFYFSKKKMGWLK--PNQPYLLSIQDPVDFQNDVSK 496
>sp|Q9D0D3|PAPD1_MOUSE Poly(A) RNA polymerase, mitochondrial OS=Mus musculus GN=Mtpap PE=2
SV=1
Length = 585
Score = 100 bits (250), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/327 (23%), Positives = 150/327 (45%), Gaps = 49/327 (14%)
Query: 393 EEKAKQKKL-LTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDS------- 444
EE + + L +L+E + +P + +GS N+FG D+D+ L ++++
Sbjct: 204 EENIRLRHLTCSLIEDIAAAYFPSCVIRPFGSSVNTFGKLGCDLDMFLDLDETGKLDVHK 263
Query: 445 -----------------EINKSEVLLKLADILQSDNL----QNVQALTRARVPIVKLMDP 483
I ++L + + L DN VQ + AR P+V+
Sbjct: 264 NTGNFFMEFQVKNVPSERIATQKILSVIGECL--DNFGPGCVGVQKILNARCPLVRFSHQ 321
Query: 484 VTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGT-LSSY 542
+G CD+ NN +A+ +++LL Y +D R++ L F V+ WA++ + + G ++++
Sbjct: 322 GSGFQCDLTANNSIALKSSELLYIYGSLDSRVRALVFSVRCWARAHSLTSSIPGAWITNF 381
Query: 543 AYVLMCIHFLQQRRPAILPCLQGMEKTYSV----TVDDIECAYFDQVDKLHGFGSRNKES 598
+ +M I FLQ+R P ILP L ++ ++ C + V+K+ G N E+
Sbjct: 382 SLTVMVIFFLQRRSPPILPTLDSLKSIADAEDRCILEGNNCTFVQDVNKIQPSG--NTET 439
Query: 599 IGRLVWAFFNYWAYGHDYASNVISVRTGSTISKQEKDWTRRIGNDRHLICIEDPFEVTHD 658
+ L+ FF Y+ + N I++R G +K D + I++PFE + +
Sbjct: 440 LELLIKEFFEYFG-NFAFNKNSINIRQGREQNKP----------DSSPLYIQNPFETSLN 488
Query: 659 LGRVVDKFSIKVLREEFERAAEIMQHD 685
+ + V + ++ E +A I++ +
Sbjct: 489 ISKNVSQSQLQKFVELARDSAWILEQE 515
>sp|Q5XG87|PAPD7_HUMAN DNA polymerase sigma OS=Homo sapiens GN=PAPD7 PE=1 SV=2
Length = 542
Score = 99.4 bits (246), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 76/310 (24%), Positives = 137/310 (44%), Gaps = 46/310 (14%)
Query: 390 PAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKS 449
P EE A +++++ +E +V WP A + ++GS + + SDID+ + K
Sbjct: 3 PCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVV------FGKW 56
Query: 450 E--VLLKLADILQSDNLQ---NVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKL 504
E L L L+ N+ +++ L +A VPI+KL D T + DI N V +
Sbjct: 57 ERPPLQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEF 116
Query: 505 LRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQ 564
+++Y + L L ++K + R +N + G +SSY+ +LM I FLQ
Sbjct: 117 IKNYMKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQ----------- 165
Query: 565 GMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVR 624
++D R E++G L+ FF + +Y I ++
Sbjct: 166 ----------------LHPRID-----ARRADENLGMLLVEFFELYGRNFNYLKTGIRIK 204
Query: 625 T-GSTISKQEKDWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQ 683
G+ I+K+E G ++CIEDP +D+GR + +++ F+ A ++
Sbjct: 205 EGGAYIAKEEIMKAMTSGYRPSMLCIEDPLLPGNDVGR--SSYGAMQVKQVFDYAYIVLS 262
Query: 684 HDPNPCVKLF 693
H +P + +
Sbjct: 263 HAVSPLARSY 272
>sp|Q6PB75|PAPD7_MOUSE DNA polymerase sigma OS=Mus musculus GN=Papd7 PE=2 SV=1
Length = 542
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/310 (24%), Positives = 137/310 (44%), Gaps = 46/310 (14%)
Query: 390 PAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKS 449
P EE A +++++ +E +V WP A + ++GS + + SDID+ + K
Sbjct: 3 PCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVV------FGKW 56
Query: 450 E--VLLKLADILQSDNLQ---NVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKL 504
E L L L+ N+ +++ L +A VPI+KL D T + DI N V +
Sbjct: 57 ERPPLQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEF 116
Query: 505 LRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQ 564
+++Y + L L ++K + R +N + G +SSY+ +LM I FLQ
Sbjct: 117 IKNYMKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQ----------- 165
Query: 565 GMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVR 624
++D R E++G L+ FF + +Y I ++
Sbjct: 166 ----------------LHPRID-----ARRADENLGMLLVEFFELYGRNFNYLKTGIRIK 204
Query: 625 T-GSTISKQEKDWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQ 683
G+ I+K+E G ++CIEDP +D+GR + +++ F+ A ++
Sbjct: 205 EGGAYIAKEEIMKAMTSGYRPSMLCIEDPLLPGNDVGR--SSYGAMQVKQVFDYAYIVLS 262
Query: 684 HDPNPCVKLF 693
H +P + +
Sbjct: 263 HAVSPLARSY 272
>sp|Q68ED3|PAPD5_MOUSE PAP-associated domain-containing protein 5 OS=Mus musculus GN=Papd5
PE=2 SV=2
Length = 633
Score = 93.2 bits (230), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 73/315 (23%), Positives = 134/315 (42%), Gaps = 44/315 (13%)
Query: 384 IYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCL--AI 441
YE + P EE+ + ++++ +E ++ + WP A + ++GS + SDID+ +
Sbjct: 141 FYEYMSPRPEEEKMRMEVVSRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLVVFGKW 200
Query: 442 NDSEINKSEVLLKLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVN 501
+ + E L+ + D+ V+ L +A VPI+KL D T + DI N V
Sbjct: 201 ENLPLWTLEEALRKHKVADEDS---VKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRA 257
Query: 502 TKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQ--QRRPAI 559
L++D+ + L L ++K + R +N + G + SY+ LM + FLQ R A
Sbjct: 258 ADLIKDFTKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHPREDAC 317
Query: 560 LPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASN 619
+P + G L+ FF + +Y
Sbjct: 318 IP----------------------------------NTNYGVLLIEFFELYGRHFNYLKT 343
Query: 620 VISVRT-GSTISKQEKDWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERA 678
I ++ GS ++K E G ++ IEDP + +D+GR + +++ F+ A
Sbjct: 344 GIRIKDGGSYVAKDEVQKNMLDGYRPSMLYIEDPLQPGNDVGR--SSYGAMQVKQAFDYA 401
Query: 679 AEIMQHDPNPCVKLF 693
++ H +P K +
Sbjct: 402 YVVLSHAVSPIAKYY 416
>sp|Q8NDF8|PAPD5_HUMAN PAP-associated domain-containing protein 5 OS=Homo sapiens GN=PAPD5
PE=1 SV=2
Length = 572
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/315 (23%), Positives = 133/315 (42%), Gaps = 44/315 (13%)
Query: 384 IYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCL--AI 441
YE + P EE+ + +++ +E ++ + WP A + ++GS + SDID+ +
Sbjct: 127 FYEYMSPRPEEEKMRMEVVNRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLVVFGKW 186
Query: 442 NDSEINKSEVLLKLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVN 501
+ + E L+ + D+ V+ L +A VPI+KL D T + DI N V
Sbjct: 187 ENLPLWTLEEALRKHKVADEDS---VKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRA 243
Query: 502 TKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQ--QRRPAI 559
L++D+ + L L ++K + R +N + G + SY+ LM + FLQ R A
Sbjct: 244 ADLIKDFTKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHPREDAC 303
Query: 560 LPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASN 619
+P + G L+ FF + +Y
Sbjct: 304 IP----------------------------------NTNYGVLLIEFFELYGRHFNYLKT 329
Query: 620 VISVRT-GSTISKQEKDWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERA 678
I ++ GS ++K E G ++ IEDP + +D+GR + +++ F+ A
Sbjct: 330 GIRIKDGGSYVAKDEVQKNMLDGYRPSMLYIEDPLQPGNDVGR--SSYGAMQVKQAFDYA 387
Query: 679 AEIMQHDPNPCVKLF 693
++ H +P K +
Sbjct: 388 YVVLSHAVSPIAKYY 402
>sp|P53632|PAP2_YEAST Poly(A) RNA polymerase protein 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PAP2 PE=1 SV=1
Length = 584
Score = 87.0 bits (214), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 74/309 (23%), Positives = 141/309 (45%), Gaps = 45/309 (14%)
Query: 390 PAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKS 449
P+ EE + + ++ + + V + WPDA L+++GS + + SDID + SE+
Sbjct: 192 PSREEIEIRNQTISTIREAVKQLWPDADLHVFGSYSTDLYLPGSDIDCVVT---SELGGK 248
Query: 450 EV---LLKLADILQSDNLQN-VQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLL 505
E L LA L+ NL V+ + +ARVPI+K ++P +GI D+ + KL+
Sbjct: 249 ESRNNLYSLASHLKKKNLATEVEVVAKARVPIIKFVEPHSGIHIDVSFERTNGIEAAKLI 308
Query: 506 RDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQG 565
R++ L++L IVK + +R +N + G L ++ + + FL P I+
Sbjct: 309 REWLDDTPGLRELVLIVKQFLHARRLNNVHTGGLGGFSIICLVFSFLHM-HPRIIT---- 363
Query: 566 MEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRT 625
+++D K+++G L+ FF + Y +
Sbjct: 364 -----------------NEIDP--------KDNLGVLLIEFFELYGKNFGYDDVALGSSD 398
Query: 626 GSTISKQEKDWT--RRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQ 683
G + + W+ + I N L I+DP + ++++ R F+I+ +++ F A +++
Sbjct: 399 GYPVYFPKSTWSAIQPIKNPFSL-AIQDPGDESNNISR--GSFNIRDIKKAFAGAFDLLT 455
Query: 684 HDPNPCVKL 692
N C +L
Sbjct: 456 ---NRCFEL 461
>sp|Q1JPD6|STPAP_BOVIN Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Bos taurus
GN=TUT1 PE=2 SV=1
Length = 871
Score = 87.0 bits (214), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 121/235 (51%), Gaps = 17/235 (7%)
Query: 435 IDVCLAINDSEINKSEVLLKLADILQS--DNLQNVQALTRARVPIVKLMDPVTGISCDIC 492
+++ A+ + +L + IL+ + VQ + AR P+VK +G+ DI
Sbjct: 324 VELAEALKGEKAEGGAMLELVGSILRGCVPGVYRVQTVPSARCPVVKFCHRPSGLHGDIS 383
Query: 493 INNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFL 552
++N LA+ N++ L +++D R++ L + ++ WA+ RG++ + L++YA L+ I+FL
Sbjct: 384 LSNRLALHNSRFLSLCSELDGRVRPLVYTLRCWAQGRGLSGSGP-LLNNYALTLLVIYFL 442
Query: 553 QQRRPAILPCLQGMEKTYS--VTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYW 610
Q R P +LP + + + V VD +C++ +L S NKE + L+ FF+
Sbjct: 443 QTRDPPVLPTVSQLTQKAGEQVEVDGWDCSFPRDASRLE--PSTNKEPLSSLLAQFFSCV 500
Query: 611 AYGHDYASNVISVRTGSTIS-----KQEKDWTRRIGNDRHLICIEDPFEVTHDLG 660
+ D +++S+R G +S R+G + ++DPF+++H++
Sbjct: 501 SC-WDLRGSLLSLREGQALSVAGGLPSNLSEGLRLGP----MNLQDPFDLSHNVA 550
>sp|D2HS90|STPAP_AILME Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Ailuropoda
melanoleuca GN=TUT1 PE=3 SV=1
Length = 869
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 126/252 (50%), Gaps = 11/252 (4%)
Query: 435 IDVCLAINDSEINKSEVLLKLADILQS--DNLQNVQALTRARVPIVKLMDPVTGISCDIC 492
+++ A++ + +L + IL+ + VQ + AR P+VK +G+ D+
Sbjct: 323 LELAEALSGEKTEGVAMLELVGSILRGCVPGVYRVQTVPSARRPVVKFCHRPSGLHGDVS 382
Query: 493 INNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFL 552
++N LA+ N++ L +++D R++ L + ++ WA+ RG++ + LS+YA L+ I+FL
Sbjct: 383 LSNRLALHNSRFLSLCSELDGRVRPLVYTLRCWAQGRGLSGSGP-LLSNYALTLLVIYFL 441
Query: 553 QQRRPAILPCLQGMEKTYS----VTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFN 608
Q R P +LP + + + V VD +C++ L S NKE + L+ FF+
Sbjct: 442 QTRDPPVLPTVSQLTQKAGEGEQVEVDGWDCSFPRDASGLE--PSTNKEPLSSLLAQFFS 499
Query: 609 YWAYGHDYASNVISVRTGSTISKQEKDWTRRIGNDR-HLICIEDPFEVTHDLGRVVDKFS 667
+ D +++S+R G + + R R + ++DPF+++H++ V
Sbjct: 500 CVSC-WDLRGSLLSLREGQALPVAGDLPSNRWEGLRLGPMNLQDPFDLSHNVAANVTSRV 558
Query: 668 IKVLREEFERAA 679
L+ + AA
Sbjct: 559 AGRLQNSCQAAA 570
>sp|A9JTS5|STPAP_XENTR Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Xenopus
tropicalis GN=tut1 PE=2 SV=1
Length = 843
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 120/241 (49%), Gaps = 22/241 (9%)
Query: 434 DIDVCLAINDSEINKSEVLLKLADILQS--DNLQNVQALTRARVPIVKLMDPVTGISCDI 491
D DV ++ ++ E+L + +L+ + VQ++ AR P++ +G+ D+
Sbjct: 285 DEDVTPGLSLKGLSSEEILEVVGKVLRHCVPGVHGVQSVPTARRPVIHFQHKTSGLRGDV 344
Query: 492 CINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQG---TLSSYAYVLMC 548
+NN LA+ N+ LR + +D R+ QL + V++WA+ + G L++YA L+
Sbjct: 345 TLNNRLALRNSSFLRLCSDLDARVPQLVYTVRYWARVNQLAGNPFGGGPLLNNYALTLLV 404
Query: 549 IHFLQQRRPAILPCLQGMEKTYS----VTVDDIECAYFDQVDKLHGFGSRNKESIGRLVW 604
FLQ R P +LP L + + + +D +C++ ++ G N++S+ L+
Sbjct: 405 FFFLQTRNPPVLPTLVHLREETANEVPQVIDGWDCSFPSDPAQVKESG--NQQSLSSLLS 462
Query: 605 AFFNYWAYGHDYASNVISVRTGSTI----SKQEKDWTR--RIGNDRHLICIEDPFEVTHD 658
FF+++A D ++ G TI S W+ R+G + I+DPFE++H+
Sbjct: 463 EFFSFYA-SLDLHLLILCPCNGLTIPLPFSSPPPAWSEGFRLGP----LNIQDPFELSHN 517
Query: 659 L 659
+
Sbjct: 518 V 518
>sp|Q3MHT4|STPAP_RAT Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Rattus
norvegicus GN=Tut1 PE=2 SV=1
Length = 866
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 129/262 (49%), Gaps = 19/262 (7%)
Query: 429 GVSKSDIDVCLAINDSEINKSEVLLKLADILQS--DNLQNVQALTRARVPIVKLMDPVTG 486
G + ++++ A D + + VL + IL+ + VQ + AR P+VK +G
Sbjct: 319 GKHRKELELAEASKDEKEEATAVLELVGSILRGCVPGVYRVQTVPSARRPVVKFCHRPSG 378
Query: 487 ISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVL 546
+ DI ++N LA+ N++ L +++D R++ L + ++ WA+ G++ L++YA L
Sbjct: 379 LHGDISLSNRLALYNSRFLNLCSEMDSRVRPLVYTLRCWAQHNGLS-GGGPLLNNYALTL 437
Query: 547 MCIHFLQQRRPAILPCLQGMEKTYS----VTVDDIECAYFDQVDKLHGFGSRNKESIGRL 602
+ I+FLQ R P +LP + + + V VD +C++ +L S N E + L
Sbjct: 438 LVIYFLQTRDPPVLPTVAQLTQRSGEGEQVEVDGWDCSFPKDASRLE--PSTNVEPLSSL 495
Query: 603 VWAFFNYWAYGHDYASNVISVRTGSTISKQ----EKDWT-RRIGNDRHLICIEDPFEVTH 657
+ FF+ + D + +++S+R G + W R+G + ++DPF+++H
Sbjct: 496 LAQFFSCVSC-WDLSGSLLSLREGQALMVAGGLPSDLWEGLRLGP----MNLQDPFDLSH 550
Query: 658 DLGRVVDKFSIKVLREEFERAA 679
++ V K L+ AA
Sbjct: 551 NVAANVTSRVAKRLQSSCGAAA 572
>sp|Q9HFW3|TRF5_ASHGO Poly(A) RNA polymerase protein 1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=TRF5
PE=3 SV=1
Length = 626
Score = 83.6 bits (205), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 130/284 (45%), Gaps = 40/284 (14%)
Query: 413 WPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLADILQSDNLQN-VQALT 471
WPDA L+ +GS A + SDID + + + L LA L+ + L V +
Sbjct: 231 WPDANLHCFGSYATDLYLPGSDIDCVVNSKSGDKDNKNALYSLASYLKRNGLATQVSVIA 290
Query: 472 RARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGV 531
+ARVPI+K ++P + I D+ V K++R + L++L IVK + +R +
Sbjct: 291 KARVPIIKFVEPASQIHIDLSFERTNGVEAAKIIRGWLHDTPGLRELVLIVKQFLHARRL 350
Query: 532 NVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGF 591
N + G L ++ + + FL+ P I+ C DIE
Sbjct: 351 NDVHIGGLGGFSIICLAYSFLKL-HPRII-CR------------DIEPL----------- 385
Query: 592 GSRNKESIGRLVWAFFNYWA--YGHDYASNVISVRTGSTISKQEK-DWTRRIGNDRHLIC 648
+++G L+ FF + +G+D +S S I+K+E + TR + +L+
Sbjct: 386 -----QNLGVLLIDFFELYGKNFGYDDVGIAVSEGDASYINKKEYPELTRNLRGTFNLV- 439
Query: 649 IEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQHDPNPCVKL 692
I+DP + +++ R F+I+ +++ F A E++ N C +L
Sbjct: 440 IQDPGDPANNISR--GSFNIRDIKKAFAGAFELLT---NRCFEL 478
>sp|Q9H6E5|STPAP_HUMAN Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Homo
sapiens GN=TUT1 PE=1 SV=2
Length = 874
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 107/203 (52%), Gaps = 17/203 (8%)
Query: 467 VQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWA 526
VQ + AR P+VK +G+ D+ ++N LA+ N++ L +++D R++ L + ++ WA
Sbjct: 358 VQTVPSARRPVVKFCHRPSGLHGDVSLSNRLALHNSRFLSLCSELDGRVRPLVYTLRCWA 417
Query: 527 KSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYS----VTVDDIECAYF 582
+ RG++ + LS+YA L+ I+FLQ R P +LP + + + V VD +C++
Sbjct: 418 QGRGLSGSGP-LLSNYALTLLVIYFLQTRDPPVLPTVSQLTQKAGEGEQVEVDGWDCSFP 476
Query: 583 DQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISKQ----EKDWTR 638
+L S N E + L+ FF+ + D +++S+R G + W
Sbjct: 477 RDASRLE--PSINVEPLSSLLAQFFSCVSC-WDLRGSLLSLREGQALPVAGGLPSNLWEG 533
Query: 639 -RIGNDRHLICIEDPFEVTHDLG 660
R+G + ++DPF+++H++
Sbjct: 534 LRLGP----LNLQDPFDLSHNVA 552
>sp|O74518|CID12_SCHPO Poly(A) RNA polymerase cid12 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cid12 PE=1 SV=1
Length = 336
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 141/337 (41%), Gaps = 49/337 (14%)
Query: 353 GKRLLSQRMRNLKWQIECRADIGRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKE 412
GK LL + ++ W E +D NA + E + P EE +K LL L+ + +
Sbjct: 2 GKVLL--ELHSVPWNEEGLSD----NARLYSFLEFVSPKIEELKYRKLLLEKLQTHIREV 55
Query: 413 WPDARLYLYGSCANSFGVSKSDIDVCL-AINDSEINKSEVLLKLADILQSDNLQNVQALT 471
DA L +YGS +S SD+DV L + E+ K V + L L +D +
Sbjct: 56 VLDAELQVYGSMYIGTTLSISDVDVSLKSPRVGELEKRRVTMVLRKYLDAD----ADFHS 111
Query: 472 RARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGV 531
ARVP + L+D V+GI D+ N A +L + Y + +L ++KHW R +
Sbjct: 112 SARVPRINLVD-VSGIGVDLTFGNDKACRTAELQKAYNEEHPIFGRLLMLLKHWLFERDL 170
Query: 532 NVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGF 591
+ G ++S A M I +L+ R H
Sbjct: 171 ENVHHGGIASCALSYMLIGWLEMR--------------------------------FHKK 198
Query: 592 GSRNK-ESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISKQEKDWTRRIGNDRHLICIE 650
G ++ + I L+ FF +W Y V+ TG + K +K W + +L+ IE
Sbjct: 199 GIDSEVQPIRALLQKFFYFWGVEWTYELFVLRPLTGQIVPKLQKGWLNEV--QPNLLSIE 256
Query: 651 DPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQHDPN 687
DP + +D+G+ F I +++ F +A + D
Sbjct: 257 DPIDRNNDIGK--QSFQISMIKAAFVASANELLSDKT 291
>sp|G5EFL0|GLD4_CAEEL Poly(A) RNA polymerase gld-4 OS=Caenorhabditis elegans GN=gld-4
PE=1 SV=1
Length = 845
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 90/184 (48%), Gaps = 3/184 (1%)
Query: 373 DIGRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDA--RLYLYGSCANSFGV 430
+I L+ + +Y + P E E + K+ + V + W ++ ++GS + +
Sbjct: 76 NIQGLHEEIVDMYHWIKPNEIESRLRTKVFEKVRDSVLRRWKQKTIKISMFGSLRTNLFL 135
Query: 431 SKSDIDVCLAINDSEINKSEVLLKLADILQSDNL-QNVQALTRARVPIVKLMDPVTGISC 489
SDIDV + +D + L + A L++DN+ ++V A VPIVK++D T +S
Sbjct: 136 PTSDIDVLVECDDWVGTPGDWLAETARGLEADNIAESVMVYGGAFVPIVKMVDRDTRLSI 195
Query: 490 DICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCI 549
DI N + V + + ++ L ++K + R +N T+ G LSSY VL+ +
Sbjct: 196 DISFNTVQGVRAASYIAKVKEEFPLIEPLVLLLKQFLHYRNLNQTFTGGLSSYGLVLLLV 255
Query: 550 HFLQ 553
+F Q
Sbjct: 256 NFFQ 259
>sp|Q8R3F9|STPAP_MOUSE Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Mus
musculus GN=Tut1 PE=1 SV=1
Length = 869
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 90/175 (51%), Gaps = 9/175 (5%)
Query: 440 AINDSEINKSEVLLKLADILQS--DNLQNVQALTRARVPIVKLMDPVTGISCDICINNLL 497
A D + + VL + IL+ + VQ + AR P+VK +G+ D+ ++N L
Sbjct: 332 ASKDEKEEAAAVLELVGSILRGCVPGVYRVQTVPSARRPVVKFCHRPSGLHGDVSLSNRL 391
Query: 498 AVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRP 557
A+ N++ L +++D R++ L + ++ WA+ G++ L++YA L+ I+FLQ R P
Sbjct: 392 ALYNSRFLNLCSEMDGRVRPLVYTLRCWAQHNGLS-GGGPLLNNYALTLLVIYFLQTRDP 450
Query: 558 AILPCLQGMEKTYS----VTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFN 608
+LP + + + V VD +C++ +L S N E + L+ FF+
Sbjct: 451 PVLPTVAQLTQRAGEGEQVEVDGWDCSFPKDASRLE--PSTNVEPLSSLLAQFFS 503
Score = 35.0 bits (79), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 41/78 (52%)
Query: 368 IECRADIGRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANS 427
++ A+ + A + + E +E E+ + ++ L++++ + +P ++ +GS NS
Sbjct: 150 VQALAEAADVGAQMVKLVELRELSEAERQLRNLVVALMQEVFTEFFPGCVVHPFGSTVNS 209
Query: 428 FGVSKSDIDVCLAINDSE 445
F V D+D+ L + D E
Sbjct: 210 FDVHGCDLDLFLDMGDME 227
>sp|P48561|TRF5_YEAST Poly(A) RNA polymerase protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TRF5 PE=1 SV=2
Length = 642
Score = 73.6 bits (179), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/305 (21%), Positives = 132/305 (43%), Gaps = 37/305 (12%)
Query: 390 PAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKS 449
P++ E + + + L + V + W DA L+++GS A + SDID + + +
Sbjct: 189 PSKNEIKCRNRTIDKLRRAVKELWSDADLHVFGSFATDLYLPGSDIDCVVNSRNRDKEDR 248
Query: 450 EVLLKLADILQSDNLQ-NVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDY 508
+ +LA L++ L ++ + + RVPI+K ++P + + D+ + KL+R++
Sbjct: 249 NYIYELARHLKNKGLAIRMEVIVKTRVPIIKFIEPQSQLHIDVSFERTNGLEAAKLIREW 308
Query: 509 AQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEK 568
+ L++L I+K + SR +N + G L + + + FL P I K
Sbjct: 309 LRDSPGLRELVLIIKQFLHSRRLNNVHTGGLGGFTVICLVYSFLNM-HPRI--------K 359
Query: 569 TYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGST 628
+ + V D ++G L+ FF + Y IS+ G
Sbjct: 360 SNDIDVLD---------------------NLGVLLIDFFELYGKNFGYDDVAISISDGYA 398
Query: 629 ISKQEKDW-TRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQHDPN 687
+ W T + + I+DP + +++ R F++K +++ F A E++ N
Sbjct: 399 SYIPKSCWRTLEPSRSKFSLAIQDPGDPNNNISR--GSFNMKDIKKAFAGAFELL---VN 453
Query: 688 PCVKL 692
C +L
Sbjct: 454 KCWEL 458
>sp|Q9R0L6|PCM1_MOUSE Pericentriolar material 1 protein OS=Mus musculus GN=Pcm1 PE=1 SV=2
Length = 2025
Score = 33.5 bits (75), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 34/113 (30%)
Query: 19 EFLLSLLQKPQQHPQAP-------------------PHQTPPQQPSLPNDPAVA---AVG 56
+ L L+++ QHP+ P P P Q +L N P +
Sbjct: 1074 QMLTELMRQQNQHPEKPRSKERGSSASHPSSPNLFCPFSFPTQPVNLFNLPGFTNFPSFA 1133
Query: 57 PTINFQPQWPSNGCDL-----PPTWPRTPLPLN------FLGFPQNPWASSST 98
P +NF P +PSN D PT + PL N ++ FP+ P+ SSS+
Sbjct: 1134 PGMNFSPLFPSNFGDFSQNVSTPTEQQQPLAQNPSGKTEYMAFPK-PFESSSS 1185
>sp|Q8ZTC3|CCA_PYRAE CCA-adding enzyme OS=Pyrobaculum aerophilum (strain ATCC 51768 /
IM2 / DSM 7523 / JCM 9630 / NBRC 100827) GN=cca PE=3
SV=1
Length = 419
Score = 33.5 bits (75), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 385 YESLIPAEEEKAKQKKLLTLLEKLVCKEWP----DARLYLYGSCA-NSFGVSKSDIDVCL 439
Y+ +IP+EEE+ + +++ +++LV + DA + +YGS A ++ + DID+ +
Sbjct: 12 YKLVIPSEEEEKRIREVTQKVKRLVSQIIEEGGIDALVDVYGSGARGTWLPGQRDIDIFV 71
Query: 440 AINDSEINKSEVLLKLADILQSDNLQNVQALTRARVPIVKL 480
+ND I +V+ L + L AL A+ P V L
Sbjct: 72 VLNDRRIKPEDVVKILTSRFTTLGLN--WALRYAQHPYVSL 110
>sp|A1RS16|CCA_PYRIL CCA-adding enzyme OS=Pyrobaculum islandicum (strain DSM 4184 / JCM
9189) GN=cca PE=3 SV=1
Length = 418
Score = 33.5 bits (75), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 56/113 (49%), Gaps = 9/113 (7%)
Query: 385 YESLIPAEEEKAKQKKLLTLLEKLVC----KEWPDARLYLYGSCANSFGV-SKSDIDVCL 439
Y+ + P+EEE+ + KK+ ++ L+ K +A + +YGS A S + + DID+ +
Sbjct: 12 YKLVTPSEEEERELKKVTEKVKALIADAINKYGIEAEIGVYGSSARSTWLPGQRDIDIFI 71
Query: 440 AINDSEINKSEVLLKLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDIC 492
+ + IN +V+ L+ + ++ A+ P + L+ V G D+
Sbjct: 72 VLTNRNINIKDVITLLSRYFSERGVT--WSMRYAQHPYLSLL--VDGYEVDVV 120
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 281,586,117
Number of Sequences: 539616
Number of extensions: 12924691
Number of successful extensions: 41641
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 172
Number of HSP's that attempted gapping in prelim test: 40844
Number of HSP's gapped (non-prelim): 742
length of query: 699
length of database: 191,569,459
effective HSP length: 125
effective length of query: 574
effective length of database: 124,117,459
effective search space: 71243421466
effective search space used: 71243421466
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)