Query 005380
Match_columns 699
No_of_seqs 206 out of 1357
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 23:42:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005380.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005380hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e8f_A Poly(A) RNA polymerase 100.0 8.6E-63 2.9E-67 538.8 31.8 322 371-696 38-377 (405)
2 4fh3_A Poly(A) RNA polymerase 100.0 1.6E-58 5.5E-63 493.0 30.4 315 376-694 15-347 (349)
3 3nyb_A Poly(A) RNA polymerase 100.0 1.4E-55 4.9E-60 468.8 25.7 286 366-685 10-299 (323)
4 3hj4_A Minor editosome-associa 100.0 1.5E-54 5E-59 468.1 22.8 304 375-685 5-367 (384)
5 3pq1_A Poly(A) RNA polymerase; 100.0 1.4E-53 4.8E-58 471.0 27.7 275 375-684 132-437 (464)
6 2ikf_A RNA uridylyl transferas 100.0 3.7E-53 1.3E-57 454.9 23.4 298 375-683 26-349 (353)
7 2b4v_A RNA editing complex pro 100.0 1E-51 3.4E-56 458.0 24.8 299 370-685 13-440 (468)
8 1q79_A Poly(A) polymerase alph 100.0 7.2E-44 2.5E-48 398.9 24.8 276 375-696 36-365 (514)
9 2hhp_A Poly(A) polymerase; tem 100.0 1.7E-43 5.8E-48 397.1 25.1 276 375-696 23-352 (530)
10 1r89_A TRNA nucleotidyltransfe 99.6 2.6E-14 8.9E-19 157.0 23.5 237 379-697 5-258 (437)
11 1px5_A 2'-5'-oligoadenylate sy 99.4 1.7E-11 5.7E-16 131.2 25.1 257 381-684 11-329 (349)
12 4at7_A Interleukin enhancer-bi 98.6 1.9E-06 6.4E-11 92.3 18.0 242 374-684 24-297 (364)
13 1no5_A Hypothetical protein HI 97.8 9.9E-05 3.4E-09 66.6 9.4 43 401-443 13-55 (114)
14 4at7_B NF90, interleukin enhan 97.7 0.0044 1.5E-07 67.0 22.3 230 381-684 16-329 (383)
15 1ylq_A Putative nucleotidyltra 97.6 8.1E-05 2.8E-09 65.3 6.9 43 401-443 3-46 (96)
16 1wot_A Putative minimal nucleo 97.2 0.00048 1.6E-08 60.6 6.0 38 405-443 16-53 (98)
17 2rff_A Putative nucleotidyltra 97.0 0.00077 2.6E-08 60.9 5.9 46 398-443 12-61 (111)
18 4ebj_A Aminoglycoside nucleoti 96.2 0.0052 1.8E-07 63.2 6.2 44 401-444 25-69 (272)
19 1kny_A Kntase, kanamycin nucle 95.9 0.0051 1.7E-07 62.8 4.4 45 399-443 13-59 (253)
20 3jz0_A Lincosamide nucleotidyl 93.2 0.35 1.2E-05 50.6 10.1 92 396-499 22-118 (287)
21 2fmp_A DNA polymerase beta; nu 89.9 1.3 4.4E-05 47.1 10.3 127 399-532 156-292 (335)
22 2bcq_A DNA polymerase lambda; 88.0 2.3 7.8E-05 45.2 10.6 126 399-532 153-286 (335)
23 2ihm_A POL MU, DNA polymerase 80.9 6.1 0.00021 42.4 10.0 63 399-463 160-222 (360)
24 1jms_A Terminal deoxynucleotid 79.4 11 0.00037 40.7 11.4 64 399-463 180-244 (381)
25 3b0x_A DNA polymerase beta fam 68.7 18 0.00061 40.9 10.2 120 399-537 164-284 (575)
26 2pbe_A AAD6, aminoglycoside 6- 64.1 16 0.00056 37.8 8.1 43 400-443 8-53 (294)
27 1jaj_A DNA polymerase beta-lik 63.0 9.1 0.00031 37.1 5.5 117 400-532 9-136 (174)
28 2fcl_A Hypothetical protein TM 54.3 42 0.0014 32.0 8.4 55 401-463 18-76 (169)
29 1v4a_A Glutamate-ammonia-ligas 35.9 56 0.0019 35.7 6.9 44 416-459 155-206 (440)
30 2nrk_A Hypothetical protein GR 31.6 2.2E+02 0.0075 27.1 9.5 119 400-529 21-144 (173)
31 3k7d_A Glutamate-ammonia-ligas 27.7 97 0.0033 34.6 7.1 44 416-459 235-287 (498)
No 1
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=100.00 E-value=8.6e-63 Score=538.83 Aligned_cols=322 Identities=32% Similarity=0.562 Sum_probs=292.9
Q ss_pred chhhhhccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhCCCceEEEecceecCCCCCCCCceEEEeecCCccchHH
Q 005380 371 RADIGRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSE 450 (699)
Q Consensus 371 ~~did~L~~eI~~f~~~l~PT~eE~~~R~~ll~~L~~iI~~~~p~a~V~~FGS~aTGL~lp~SDIDLvL~~~~~~i~k~e 450 (699)
..++++|+.+|.++|+++.||++|.+.|++++++|+++|++.||+++|++|||+++|+++|+|||||+|..+... ...+
T Consensus 38 ~~~~~~L~~~i~~~~~~i~Pt~eE~~~R~~v~~~l~~~i~~~~p~~~v~~fGS~~~G~~~~~SDiDl~v~~~~~~-~~~~ 116 (405)
T 4e8f_A 38 PNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRV-QSDT 116 (405)
T ss_dssp CCSCHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEESHHHHTCCBSSCCEEEEEECCC----CTT
T ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccCCCCCCCCCEEEEEEecCCC-CHHH
Confidence 345778999999999999999999999999999999999999999999999999999999999999999886521 2234
Q ss_pred HHHHHHHHHhcCCCcceEEeeeeeeceEEEe-cccC----CeeEEEEEecchhhhhhHHHHHHhhcChhHHHHHHHHHHH
Q 005380 451 VLLKLADILQSDNLQNVQALTRARVPIVKLM-DPVT----GISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHW 525 (699)
Q Consensus 451 ~L~kLa~iL~s~~~~~V~~I~~ARVPIIKf~-d~~t----gI~VDISfnn~~Gi~nT~LIr~y~~~dPr~r~LvllLK~W 525 (699)
++.++++.|++. ..++..|.+||||||||+ |+.+ |++|||||+|..|+.+|.+++.|.+.+|++|+|+++||+|
T Consensus 117 ~l~~l~~~L~~~-~~~v~~i~~ArVPIIK~~~d~~~g~~~gi~~DIs~~n~~g~~~t~ll~~y~~~~p~~r~Lv~~lK~w 195 (405)
T 4e8f_A 117 IALQFYEELIAE-GFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSSYTKLDARLKPMVLLVKHW 195 (405)
T ss_dssp HHHHHHHHHHHT-TEEEEEEEETTEEEEEEEEESSSSCCTTCCEEEEESCHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-CCeeEEeccCCCcEEEEEeccCCCccCceEEEEeecccchHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 788899999877 668899999999999999 8888 9999999999999999999999999999999999999999
Q ss_pred HHhcCCCCccCCCCChHHHHHHHHHHh-hhcCCCccccccccccccceeecCcccccccchhhhcCCCCCCcccHHHHHH
Q 005380 526 AKSRGVNVTYQGTLSSYAYVLMCIHFL-QQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVW 604 (699)
Q Consensus 526 ak~rgLn~~~~GgLSSYaL~LMVI~FL-Q~~~P~ILP~LQ~l~~~~~~~vdd~~~~f~~~~e~l~~~g~~n~~SLgeLLl 604 (699)
|+.++|++++.||||||+|++|||+|| |...|++||+||++.......+++|+|.|.+++.. .++..|..++|+||+
T Consensus 196 ak~rgl~~~~~GglsSY~l~lmvi~fLqQ~~~ppvlP~Lq~~~~~~~~~~~g~~~~f~~~l~~--~~~~~n~~slg~LL~ 273 (405)
T 4e8f_A 196 AKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLED--IPPSQNYSSLGSLLH 273 (405)
T ss_dssp HHHTTCCCTTTTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGG--SCCCSCCCCHHHHHH
T ss_pred HHHcCCCcCcCCCcChHHHHHHHHHHHHhccCCCcCCchhhcccccccccCCeeeccccchhh--hccccccccHHHHHH
Confidence 999999999999999999999999999 77889999999999888788899999999887542 366778899999999
Q ss_pred HHHHHhhcCCCCCCcEEEec-CCcccccccccccccC---------CCCCcceEEecCCCCCCCccccCCHhhHHHHHHH
Q 005380 605 AFFNYWAYGHDYASNVISVR-TGSTISKQEKDWTRRI---------GNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREE 674 (699)
Q Consensus 605 ~FF~yYs~~FD~~~~vISIr-~G~~isK~ek~w~~~~---------g~~~~~L~IeDPfdp~~NlgrsVs~~~i~~Ir~e 674 (699)
+||+||+.+|||.+.+||++ .|++++|.++.|.+.. ...++.|||+|||++++|+||+|+..++..|+++
T Consensus 274 ~FF~yY~~~Fd~~~~vIsir~~g~~~~K~~k~w~~~~~~~g~~~~~~~~~~~L~IeDPf~~~~Nv~r~vs~~~~~~I~~e 353 (405)
T 4e8f_A 274 GFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGE 353 (405)
T ss_dssp HHHHHHHHTCCTTTBEECSSSTTCCCBHHHHTCCC-------------CCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHH
T ss_pred HHHHHHhcccCCCCcEEEEecCCcccccccccccccccccccccccccCCceEEEECCCCcccccccCCCHHHHHHHHHH
Confidence 99999998899999999999 7889999888997641 1346789999999999999999999999999999
Q ss_pred HHHHHHHhhcC--CCccccccccC
Q 005380 675 FERAAEIMQHD--PNPCVKLFEPY 696 (699)
Q Consensus 675 F~rA~~iL~~~--~n~~~~LfeP~ 696 (699)
|++|+++|++. .++|.+||+|+
T Consensus 354 F~rA~~iL~~~~~~~~w~~Lf~~~ 377 (405)
T 4e8f_A 354 FMAASRLLNSRSYPIPYDSLFEEA 377 (405)
T ss_dssp HHHHHHHHTCSSSSCCGGGGGSCC
T ss_pred HHHHHHHHhhhccCCCHHHHhCcC
Confidence 99999999998 68999999986
No 2
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=100.00 E-value=1.6e-58 Score=493.02 Aligned_cols=315 Identities=32% Similarity=0.597 Sum_probs=271.7
Q ss_pred hccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhCCCceEEEecceecCCCCCCCCceEEEeecCCccchHHHHHHH
Q 005380 376 RLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKL 455 (699)
Q Consensus 376 ~L~~eI~~f~~~l~PT~eE~~~R~~ll~~L~~iI~~~~p~a~V~~FGS~aTGL~lp~SDIDLvL~~~~~~i~k~e~L~kL 455 (699)
.|++.+.++|+++.||++|.+.|+.++++|+.+|++.||+++|++|||++||+++|+||||+||+.+.. .....+..++
T Consensus 15 el~~~~~~l~~~~~pt~~e~~~R~~~~~~l~~~i~~~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~-~~~~~~~~~~ 93 (349)
T 4fh3_A 15 EFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSR-VQSDTIALQF 93 (349)
T ss_dssp HHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHTTCTTCEEEEESHHHHTCCBSSCCEEEEEECCTT-SCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccCCCCCCCCCEEEEEecCCC-CChHHHHHHH
Confidence 345556666999999999999999999999999999999999999999999999999999999987653 3444454555
Q ss_pred HHHHhcCCCcceEEeeeeeeceEEEeccc-----CCeeEEEEEecchhhhhhHHHHHHhhcChhHHHHHHHHHHHHHhcC
Q 005380 456 ADILQSDNLQNVQALTRARVPIVKLMDPV-----TGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRG 530 (699)
Q Consensus 456 a~iL~s~~~~~V~~I~~ARVPIIKf~d~~-----tgI~VDISfnn~~Gi~nT~LIr~y~~~dPr~r~LvllLK~Wak~rg 530 (699)
.+.+... ..+++.|.+||||||||++.. +++.||||+++.+|+++|++|+.|+..+|+||+|+++||+||+.+|
T Consensus 94 ~~~~~~~-~~~~~~i~~ArVPiik~~~~~~~~~~~~~~~Dis~~~~~g~~~t~ll~~~~~~~~~~r~l~~~iK~wak~~~ 172 (349)
T 4fh3_A 94 YEELIAE-GFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQ 172 (349)
T ss_dssp HHHHHHT-TEEEEEEEETTEEEEEEEEESSSSSCTTCCEEEEESCHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHhh-cccceEeeeeeeeeEEEEecccccccccceeecCcCcchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHcC
Confidence 4444433 346778999999999999753 6899999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCChHHHHHHHHHHhhh-cCCCccccccccccccceeecCcccccccchhhhcCCCCCCcccHHHHHHHHHHH
Q 005380 531 VNVTYQGTLSSYAYVLMCIHFLQQ-RRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNY 609 (699)
Q Consensus 531 Ln~~~~GgLSSYaL~LMVI~FLQ~-~~P~ILP~LQ~l~~~~~~~vdd~~~~f~~~~e~l~~~g~~n~~SLgeLLl~FF~y 609 (699)
|++++.|+||||+|++|||+|||+ ..|+++|+++.........+++|+|.|.+..+.+. +..|..++|+||++||+|
T Consensus 173 l~~~~~G~lssy~l~lmvi~fLQ~~~~pp~lP~l~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~n~~slg~LL~~FF~~ 250 (349)
T 4fh3_A 173 INSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIP--PSQNYSSLGSLLHGFFRF 250 (349)
T ss_dssp CCCGGGTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGGSC--CCSCCCCHHHHHHHHHHH
T ss_pred CCCcCCCCCChHHHHHHHHHHHHhccCCCcCchhhhccccccccccCcccccccchhhcc--cccCcccHHHHHHHHHHH
Confidence 999999999999999999999997 56899999987766666778999999988876653 467889999999999999
Q ss_pred hhcCCCCCCcEEEecC-CcccccccccccccCC---------CCCcceEEecCCCCCCCccccCCHhhHHHHHHHHHHHH
Q 005380 610 WAYGHDYASNVISVRT-GSTISKQEKDWTRRIG---------NDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAA 679 (699)
Q Consensus 610 Ys~~FD~~~~vISIr~-G~~isK~ek~w~~~~g---------~~~~~L~IeDPfdp~~NlgrsVs~~~i~~Ir~eF~rA~ 679 (699)
|+.+|||.+.+|+++. +.+++|.++.|..... ...+.|+|+|||+++||+||+|+..++.+|+.+|++|+
T Consensus 251 Y~~~Fd~~~~vIsi~~~~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~l~IeDPf~~~~Nvar~Vs~~~~~~I~~eF~~A~ 330 (349)
T 4fh3_A 251 YAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAAS 330 (349)
T ss_dssp HHHTCCTTTBCBCSSSTTCCCBHHHHTCC---------------CCSSCBBCSSSTTCBGGGGCCHHHHHHHHHHHHHHH
T ss_pred hhhccCCCCceEEecCCCCccchHHhcccccccccCcccccCCCCceEEEECCCCCCCcCCCCCCHHHHHHHHHHHHHHH
Confidence 9988999999999987 4678888888864311 23467999999999999999999999999999999999
Q ss_pred HHhhcC--CCccccccc
Q 005380 680 EIMQHD--PNPCVKLFE 694 (699)
Q Consensus 680 ~iL~~~--~n~~~~Lfe 694 (699)
++|+.. +.+|.+|||
T Consensus 331 ~~L~~~~~~~~~~~lfe 347 (349)
T 4fh3_A 331 RLLNSRSYPIPYDSLFE 347 (349)
T ss_dssp HHHHCCSSSCCGGGGGS
T ss_pred HHHhCcccCCCHHHHhh
Confidence 999875 457889987
No 3
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-55 Score=468.83 Aligned_cols=286 Identities=22% Similarity=0.415 Sum_probs=253.8
Q ss_pred cccccchhhhhccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhCCCceEEEecceecCCCCCCCCceEEEeecCCc
Q 005380 366 WQIECRADIGRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSE 445 (699)
Q Consensus 366 ~~~~c~~did~L~~eI~~f~~~l~PT~eE~~~R~~ll~~L~~iI~~~~p~a~V~~FGS~aTGL~lp~SDIDLvL~~~~~~ 445 (699)
++..++.-.+.|+.||.+|++++.||++|.+.|++++++|+++|++.||+++|++|||+++|+++|+||||++|..+...
T Consensus 10 ~~~~~~~~~~~L~~Ei~~f~~~i~Pt~eE~~~R~~~~~~l~~~~~~~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~ 89 (323)
T 3nyb_A 10 DHSKQKEISDWLTFEIKDFVAYISPSREEIEIRNQTISTIREAVKQLWPDADLHVFGSYSTDLYLPGSDIDCVVTSELGG 89 (323)
T ss_dssp CCTTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHTTCTTCCEEEESTTTTTCCCTTSCEEEEECSSCCG
T ss_pred CccccchHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCccccCCCCCCCCceEEEecCCCC
Confidence 45566677889999999999999999999999999999999999999999999999999999999999999999887644
Q ss_pred cchHHHHHHHHHHHhcCC-CcceEEeeeeeeceEEEecccCCeeEEEEEecchhhhhhHHHHHHhhcChhHHHHHHHHHH
Q 005380 446 INKSEVLLKLADILQSDN-LQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKH 524 (699)
Q Consensus 446 i~k~e~L~kLa~iL~s~~-~~~V~~I~~ARVPIIKf~d~~tgI~VDISfnn~~Gi~nT~LIr~y~~~dPr~r~LvllLK~ 524 (699)
....+.+.++++.|++.+ +.+|++|.+||||||||+|..+|++|||||++.+|+++|++++.|+..+|++|+|+++||+
T Consensus 90 ~~~~~~l~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~~~~g~~~t~li~~~~~~~~~~r~lv~~iK~ 169 (323)
T 3nyb_A 90 KESRNNLYSLASHLKKKNLATEVEVVAKARVPIIKFVEPHSGIHIAVSFERTNGIEAAKLIREWLDDTPGLRELVLIVKQ 169 (323)
T ss_dssp GGHHHHHHHHHHHHHHTTSCSSCEEEESSSCEEEEEEETTTTEEEEEESSCSSTTHHHHHHHHHHHSCTTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhCCCceEEEEEeccCCCEEEEEEcCCCceEEEEecCcHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 345678999999998755 5789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccCCCCChHHHHHHHHHHhhhcCCCccccccccccccceeecCcccccccchhhhcCCCCCCcccHHHHHH
Q 005380 525 WAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVW 604 (699)
Q Consensus 525 Wak~rgLn~~~~GgLSSYaL~LMVI~FLQ~~~P~ILP~LQ~l~~~~~~~vdd~~~~f~~~~e~l~~~g~~n~~SLgeLLl 604 (699)
||++++|++++.||||||+|++||++|||++ |+++|.- ..+..++|+||+
T Consensus 170 wak~r~l~~~~~G~lssy~l~lmvi~fLQ~~-p~~~~~~-----------------------------~~~~~~lg~LL~ 219 (323)
T 3nyb_A 170 FLHARRLNNVHTGGLGGFSIICLVFSFLHMH-PRIITNE-----------------------------IDPKDNLGVLLI 219 (323)
T ss_dssp HHHHTTCSCGGGTCCCHHHHHHHHHHHHHTC-HHHHTTC-----------------------------BCGGGCHHHHHH
T ss_pred HHHHcCCCCccCCCcCHHHHHHHHHHHHHhC-CccCccc-----------------------------CCccccHHHHHH
Confidence 9999999999999999999999999999996 4444420 012468999999
Q ss_pred HHHHHhhcCCCCCCcEEEecCCc--ccccccccccccCC-CCCcceEEecCCCCCCCccccCCHhhHHHHHHHHHHHHHH
Q 005380 605 AFFNYWAYGHDYASNVISVRTGS--TISKQEKDWTRRIG-NDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEI 681 (699)
Q Consensus 605 ~FF~yYs~~FD~~~~vISIr~G~--~isK~ek~w~~~~g-~~~~~L~IeDPfdp~~NlgrsVs~~~i~~Ir~eF~rA~~i 681 (699)
+||+||+.+|||.+.+|+|+.|. +++| +.|..... ...+.|||+||++++||+|+++ +++..|+++|++|+++
T Consensus 220 ~Ff~~Y~~~Fd~~~~~Isv~~g~~~~~~k--~~~~~~~~~~~~~~l~IeDP~~~~~nigr~~--~~~~~I~~~F~~A~~~ 295 (323)
T 3nyb_A 220 EFFELYGKNFGYDDVALGSSDGYPVYFPK--STWSAIQPIKNPFSLAIQDPGDESNNISRGS--FNIRDIKKAFAGAFDL 295 (323)
T ss_dssp HHHHHHHHTCCTTTEEEEESSSCEEEEEG--GGCGGGCSCSCSSSCCBEETTEEEEETTTTC--TTHHHHHHHHHHHHHH
T ss_pred HHHHHhccccCCCCcEEEEecCCcceeeH--HhcccccccCCCceEEEeCCCCCCcccccch--HHHHHHHHHHHHHHHH
Confidence 99999999999999999999876 4555 45754322 2356899999999999999984 7899999999999999
Q ss_pred hhcC
Q 005380 682 MQHD 685 (699)
Q Consensus 682 L~~~ 685 (699)
|++.
T Consensus 296 L~~~ 299 (323)
T 3nyb_A 296 LTNR 299 (323)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9963
No 4
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=100.00 E-value=1.5e-54 Score=468.09 Aligned_cols=304 Identities=24% Similarity=0.396 Sum_probs=251.5
Q ss_pred hhccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhCCCceEEEecceecCCCCCCCCceEEEeecCCc-----cchH
Q 005380 375 GRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSE-----INKS 449 (699)
Q Consensus 375 d~L~~eI~~f~~~l~PT~eE~~~R~~ll~~L~~iI~~~~p~a~V~~FGS~aTGL~lp~SDIDLvL~~~~~~-----i~k~ 449 (699)
.+|++||.+||+++.||++|.+.|..++++|+++|++.||+++|++|||++||+++|+|||||||..+... +.+.
T Consensus 5 ~~lt~EI~dFy~~i~PT~eE~~~R~~vv~~l~~ii~~~~p~~~v~~FGS~~tgl~lp~SDiDlvI~~~~~~~~~~~~~~~ 84 (384)
T 3hj4_A 5 REFIRGMMAHYRASLPPPEHSVVIHELQKRVLDIGMLAVNKAHVELFGSHVSGFCTPHSDADISLTYRNFSPWLQGMERV 84 (384)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHHHHSTTCEEEEESHHHHSCCCTTCCEEEEEECTTCCGGGTTCHHH
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeeeccCCCCCCCCCeeEEEecCCCcccccccchh
Confidence 46999999999999999999999999999999999999999999999999999999999999999886532 2221
Q ss_pred H---H--HHHHHHHHhcCCCcceEEeeeeeeceEEEecccCCeeEEEEEecchhhhhhHHHHHHhhcCh-hHHHHHHHHH
Q 005380 450 E---V--LLKLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDV-RLQQLAFIVK 523 (699)
Q Consensus 450 e---~--L~kLa~iL~s~~~~~V~~I~~ARVPIIKf~d~~tgI~VDISfnn~~Gi~nT~LIr~y~~~dP-r~r~LvllLK 523 (699)
. . +.++++.+...++..|. |.+||||||||+|..+|+.|||||+|..|+.||++|+.|.+.+| ++++|+++||
T Consensus 85 ~~~~~lrll~L~k~~~~~~ie~V~-ii~ARVPIIKf~d~~tgi~~DIS~nn~~gi~ns~ll~~y~~~~p~rlr~LvllvK 163 (384)
T 3hj4_A 85 DEQNNKRMTRFGKEASAMGMEDVR-YIRARIPVVQFTDGVTGIHCDVSIGNIGGVENSKILCAIRQVFPDFYGAYIHLVK 163 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEE-EECSSSCEEEEECTTTCCEEEEEECCHHHHHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhcccCCeeEEe-ecCcccCEEEEEEcCCCeEEEEEecccchHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 1 1 11234444444566665 56999999999999999999999999999999999999999955 7999999999
Q ss_pred HHHHhcCCCCccCCCCChHHHHHHHHHHhhhcCCCccccccccccccc-eeecCcccccccchhhhc---CCCCCCcccH
Q 005380 524 HWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYS-VTVDDIECAYFDQVDKLH---GFGSRNKESI 599 (699)
Q Consensus 524 ~Wak~rgLn~~~~GgLSSYaL~LMVI~FLQ~~~P~ILP~LQ~l~~~~~-~~vdd~~~~f~~~~e~l~---~~g~~n~~SL 599 (699)
+||++++|++++.|+||||+|++|||+|||++ ++||+||++.+.+. +.+++++ +..+..++. +.-+.|+++|
T Consensus 164 ~Wak~rgLn~~~~GgLsSYaL~lMVI~fLQ~~--~vLP~Lq~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~s~N~~sL 239 (384)
T 3hj4_A 164 AWGKAREVIAPERSTFNSFTVTTMALMVLQEL--GLLPVFSKPTGEFGELTVADAE--MLLQEFKLPPIYDSLHDDDEKL 239 (384)
T ss_dssp HHHHHTTSBCGGGTSBCHHHHHHHHHHHHHHH--TSSCCCCCCCSTTSCCCHHHHH--HHHTTCCCCGGGGGCSSCHHHH
T ss_pred HHHHHcCCCCccCCCccHHHHHHHHHHHHhcC--CCCCccccccccCCcccccccH--hhhhhhcCCCCcCcCCCCcccH
Confidence 99999999999999999999999999999997 79999998765432 2233333 222222211 1225688899
Q ss_pred HHH----HHHHHHHhhcCCCCCCcEEEecCCcc----------------cccccccccccC-------------------
Q 005380 600 GRL----VWAFFNYWAYGHDYASNVISVRTGST----------------ISKQEKDWTRRI------------------- 640 (699)
Q Consensus 600 geL----Ll~FF~yYs~~FD~~~~vISIr~G~~----------------isK~ek~w~~~~------------------- 640 (699)
|+| |++||+||+ +|||.+++|||+.++. .+|.++.|.+.+
T Consensus 240 geL~~~lL~~Ff~yY~-~Fdf~~~vISi~~p~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 318 (384)
T 3hj4_A 240 GEAVFFCLQRFAEYYA-KYDFSAGTVSLIHPRRHRTVYERVVRRHLELLGSRKRLEWEKHIAEHKEDGPLDENDFSASMQ 318 (384)
T ss_dssp HHHHHHHHHHHHHHHH-HCCTTTBCBCSSSTTCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhe-ecCCCCCEEEecCCcccccccchhhhhhhhhccchhhhhhhhhhhccccCCCCCCCccccccC
Confidence 999 999999999 8999999999987432 244566775321
Q ss_pred -----CCCCcceEEecCCCCCCCccccCCHhhHHHHHHHHHHHHHHhhcC
Q 005380 641 -----GNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQHD 685 (699)
Q Consensus 641 -----g~~~~~L~IeDPfdp~~NlgrsVs~~~i~~Ir~eF~rA~~iL~~~ 685 (699)
..+++.++||| |+..||+||.|+...+..|+.||+||+++|...
T Consensus 319 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (384)
T 3hj4_A 319 NETTQRPSNSPYVVED-FVNYVNCGRRVQASRVRHIQQEFNRLREMLIDK 367 (384)
T ss_dssp HHHHTSCSSSSCCBBC-TTTCCBTTTTSCGGGHHHHHHHHHHHHHHHTTT
T ss_pred ccccccccccceeeee-eccccccceecCccchhHHHHHHHHHHHHHhcc
Confidence 13578999999 999999999999999999999999999999973
No 5
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-53 Score=471.00 Aligned_cols=275 Identities=23% Similarity=0.465 Sum_probs=219.8
Q ss_pred hhccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhCCCceEEEecceecCCCCCCCCceEEEeecCCcc--------
Q 005380 375 GRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEI-------- 446 (699)
Q Consensus 375 d~L~~eI~~f~~~l~PT~eE~~~R~~ll~~L~~iI~~~~p~a~V~~FGS~aTGL~lp~SDIDLvL~~~~~~i-------- 446 (699)
+.|+.||.+||+++.||++|.+.|..++.+|+++|+..||+++|++|||++|||++|+|||||||..+....
T Consensus 132 ~sl~~EI~~f~~~i~PT~eE~~~R~~vv~~le~ii~~~fP~a~V~~FGS~~tGL~lp~SDIDlvl~~~~~~~~~~~~~~g 211 (464)
T 3pq1_A 132 ESIDDQLNTLLKEFQLTEENTKLRYLTCSLIEDMAAAYFPDCIVRPFGSSVNTFGKLGCDLDMFLDLDETRNLSAHKISG 211 (464)
T ss_dssp SSHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHTTTSTTCEEEEEGGGTSSCCBTTCCEEEEEECC-----CCSCEEC
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCCCccCCCCCCCCeEEEEecCCccccccccccc
Confidence 569999999999999999999999999999999999999999999999999999999999999997653110
Q ss_pred ----------------chHHHHHHHHHHHhc--CCCcceEEeeeeeeceEEEecccCCeeEEEEEecchhhhhhHHHHHH
Q 005380 447 ----------------NKSEVLLKLADILQS--DNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDY 508 (699)
Q Consensus 447 ----------------~k~e~L~kLa~iL~s--~~~~~V~~I~~ARVPIIKf~d~~tgI~VDISfnn~~Gi~nT~LIr~y 508 (699)
...++|..+++.|+. .++.+|+.|.+||||||||+|..+|++|||||+|..|+.||++|+.|
T Consensus 212 ~~~le~~~k~l~seR~~~~~iL~~la~~L~~~~~~~~~v~~I~~ARVPIIKf~~~~tgi~~DIS~nn~~gi~ns~ll~~y 291 (464)
T 3pq1_A 212 NFLMEFQVKNVPSERIATQKILSVLGECLDHFGPGCVGVQKILNARCPLVRFSHQASGFQCALTTNNRIALTSSELLYIY 291 (464)
T ss_dssp C---EECCCCCSCHHHHHHHHHHHHHHHHHHSSTTEEEEEEECSSSSCEEEEEETTTCCEEEEECSCTTHHHHHHHHHHH
T ss_pred chhhhhhhccchhhHHHHHHHHHHHHHHHHhcCCCCceeEEecCCCCCEEEEEEcCCCeEEEEecCCCcHHHHHHHHHHH
Confidence 023578889999986 35789999999999999999999999999999999999999999999
Q ss_pred hhcChhHHHHHHHHHHHHHhcCCCCccCCC-CChHHHHHHHHHHhhhcCCCccccccccccc----cceeecCccccccc
Q 005380 509 AQIDVRLQQLAFIVKHWAKSRGVNVTYQGT-LSSYAYVLMCIHFLQQRRPAILPCLQGMEKT----YSVTVDDIECAYFD 583 (699)
Q Consensus 509 ~~~dPr~r~LvllLK~Wak~rgLn~~~~Gg-LSSYaL~LMVI~FLQ~~~P~ILP~LQ~l~~~----~~~~vdd~~~~f~~ 583 (699)
++.||++|+|+++||+||+.++|++++.|| ||||+|++|||+|||++.|++||+||++.+. ....+++|+|.|++
T Consensus 292 ~~~dprlr~Lvl~vK~Wak~r~Ln~~~~Gg~LsSYsL~lMVI~fLQ~~~ppvLP~Lq~l~~~~~~~~~~~vdg~~~~F~~ 371 (464)
T 3pq1_A 292 GALDSRVRALVFSVRCWARAHSLTSSIPGAWITNFSLTMMVIFFLQRRSPPILPTLDSLKTLADAEDKCVIEGNNCTFVR 371 (464)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTTSSCC--CCSCCHHHHHHHHHHHHHSCC-------CCSHHHHTTC--------------
T ss_pred HHhCccHHHHHHHHHHHHHHhCCCccccCCCcCcHHHHHHHHHHHHccCCCcCCChHHhccccCcccceeeccccccccc
Confidence 999999999999999999999999999998 9999999999999999999999999998632 24568999999999
Q ss_pred chhhhcCCCCCCcccHHHHHHHHHHHhhcCCCCCCcEEEecCCcccccccccccccCCCCCcceEEecCCCCCCCccccC
Q 005380 584 QVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISKQEKDWTRRIGNDRHLICIEDPFEVTHDLGRVV 663 (699)
Q Consensus 584 ~~e~l~~~g~~n~~SLgeLLl~FF~yYs~~FD~~~~vISIr~G~~isK~ek~w~~~~g~~~~~L~IeDPfdp~~NlgrsV 663 (699)
+++.+. ...|+.++|+||++||+||+ +|||.+++||| .+|++++|
T Consensus 372 dl~~l~--~~~N~~slgeLL~gFF~yYa-~FDf~~~vIsI--------------------------------~~Nvs~nV 416 (464)
T 3pq1_A 372 DLSRIK--PSQNTETLELLLKEFFEYFG-NFAXXXXXXXX--------------------------------XXXXXXXV 416 (464)
T ss_dssp ---------CCCCCCHHHHHHHHHHHGG-GCCCCCCCCCC--------------------------------C-------
T ss_pred cHhhcC--CCCCcCCHHHHHHHHHHHHH-hCCCccccccc--------------------------------cccccccc
Confidence 887664 46789999999999999999 79999998887 58999999
Q ss_pred CHhhHHHHHHHHHHHHHHhhc
Q 005380 664 DKFSIKVLREEFERAAEIMQH 684 (699)
Q Consensus 664 s~~~i~~Ir~eF~rA~~iL~~ 684 (699)
+...+++++.++++|+.+|++
T Consensus 417 ~~~~~~r~~~~~r~a~~il~~ 437 (464)
T 3pq1_A 417 SQSQLQKFVDLARESAWILQQ 437 (464)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999996
No 6
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=100.00 E-value=3.7e-53 Score=454.86 Aligned_cols=298 Identities=24% Similarity=0.395 Sum_probs=250.4
Q ss_pred hhccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccee-cCCCCCCCCceEEEeecCC-------cc
Q 005380 375 GRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCA-NSFGVSKSDIDVCLAINDS-------EI 446 (699)
Q Consensus 375 d~L~~eI~~f~~~l~PT~eE~~~R~~ll~~L~~iI~~~~p~a~V~~FGS~a-TGL~lp~SDIDLvL~~~~~-------~i 446 (699)
..|+.++.++++.+.++.+|.+.|++++++|+++|++.||+++|++|||++ +|+++|+||||+||+.+.. +.
T Consensus 26 ~~l~~~l~~~~~~~~~~~~e~~~r~~~~~~l~~~i~~~~p~~~v~~FGS~~vtGl~lp~SDIDl~v~~~~~~~~~~~~~~ 105 (353)
T 2ikf_A 26 AVVGRSLVNSFKQFVSKDLHTRHVDATYRLVLDCVAAVDPLMRLYTFGSTVVYGVHEKGSDVDFVVLNKTDVEDGKGGDA 105 (353)
T ss_dssp HHHHHHHHHHTTTTCC-----CCHHHHHHHHHHHHHHHCTTCEEEEESHHHHHSSCCTTCCEEEEEECHHHHHSTTCCCC
T ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHCCCcEEEEecCccccCCCCCCcceeEEEeecccccccccccc
Confidence 346889999999999999999999999999999999999999999999997 9999999999999976421 00
Q ss_pred -------chHHHHHHHHHHHhcCC-CcceEEeeeeeeceEEEecccCCeeEEEEEecchhhhhhHHHHHHhhcChhHHHH
Q 005380 447 -------NKSEVLLKLADILQSDN-LQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQL 518 (699)
Q Consensus 447 -------~k~e~L~kLa~iL~s~~-~~~V~~I~~ARVPIIKf~d~~tgI~VDISfnn~~Gi~nT~LIr~y~~~dPr~r~L 518 (699)
...+++.+++++|++.. +.+|+.|.+||||||||++ .+|++|||||+|.+|+.+|++++.|+..+|+||+|
T Consensus 106 ~~~~~~~~~~~~l~~l~~~L~~~~~~~~v~~i~~ArVPIiK~~~-~~~i~~Dis~~n~~g~~~t~ll~~~~~~~p~~r~l 184 (353)
T 2ikf_A 106 ATQVAKGLQADILAKLARVIRQKHLSWNVEEVRRTRVPVVRVKG-GGAVDFDITAYRRNGVRNSALLRAYFEQNPPCRWL 184 (353)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHCTTSEEEEECSSSSCEEEEEC-SSSCEEEEEESCCHHHHHHHHHHHHHHHSTTHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHhcCCCCceEEecccceeEEEEEc-CCCcEEEEEecCccHHHHHHHHHHHHHhCccHHHH
Confidence 12468889999998744 5789999999999999998 58999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCccC-CCCChHHHHHHHHHHhhh-cCCCccccccccccccceeecCcccccccchhhhcCCCCCCc
Q 005380 519 AFIVKHWAKSRGVNVTYQ-GTLSSYAYVLMCIHFLQQ-RRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNK 596 (699)
Q Consensus 519 vllLK~Wak~rgLn~~~~-GgLSSYaL~LMVI~FLQ~-~~P~ILP~LQ~l~~~~~~~vdd~~~~f~~~~e~l~~~g~~n~ 596 (699)
+++||+||++++|++++. |+||||+|++|||+|||+ ..+|++|+++.... .++.+.. |.. + .++..+.
T Consensus 185 ~~~iK~wa~~r~l~~~~~gG~lssy~l~lmvi~~LQ~~~~~P~lp~l~~~~~----~~~~~~~-~~~----~-~~~~~~~ 254 (353)
T 2ikf_A 185 SMSIKRWSKQTGLNASVIGGSITSYGFNLMVVYYLLQRNHLQFVPPSTIDVS----RVEPLPP-HLP----L-EEPADEG 254 (353)
T ss_dssp HHHHHHHHHHTTCBTTSTTCCBCHHHHHHHHHHHHHHTTSSCCCCGGGCCGG----GSCSSCC-CCC----C-CCCTTTT
T ss_pred HHHHHHHHHHcCCCCCCCCCCchHHHHHHHHHHHHHhcCCCCCcCccccChh----hccCCCc-CCc----c-ccCCCCc
Confidence 999999999999999999 999999999999999987 45788998864321 1122211 110 1 1234567
Q ss_pred ccHHHHHHHHHHHhhcCCCCCCcEEEecCCcccccccccccccC--------CCCCcceEEecCCCCCCCccccCCHhhH
Q 005380 597 ESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISKQEKDWTRRI--------GNDRHLICIEDPFEVTHDLGRVVDKFSI 668 (699)
Q Consensus 597 ~SLgeLLl~FF~yYs~~FD~~~~vISIr~G~~isK~ek~w~~~~--------g~~~~~L~IeDPfdp~~NlgrsVs~~~i 668 (699)
.++|+||++||+||+.+|||.+.+|+++.|++++|.++.|.... ....+.|+|+|||++++|+|++|+..++
T Consensus 255 ~slg~LL~~Ff~~Y~~~fd~~~~vIsi~~~~~~~k~~~~w~~~~~~~~~~~~~~~~~~l~IeDP~~~~~N~~r~v~~~~~ 334 (353)
T 2ikf_A 255 LELGTQVLDFLHFFLHEFDSDKQVISLNRPGITTKEELDWTKSAEDFARMNGEKVHYQWCIEDPYELNLNVGRNVTPLKR 334 (353)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTTEEECSSSSSCEEHHHHTCSHHHHTTCEETTEECCCSSEEBCSSSTTCBTTTTCCHHHH
T ss_pred ccHHHHHHHHHHHhccccCcCceEEEcCCCcceechhhcccccccccccccCCCCcceEEEECCCCCCCcccCCCCHHHH
Confidence 89999999999999988999999999999999999888887420 1234689999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 005380 669 KVLREEFERAAEIMQ 683 (699)
Q Consensus 669 ~~Ir~eF~rA~~iL~ 683 (699)
..|+++|++|++++-
T Consensus 335 ~~i~~~f~~A~~~~~ 349 (353)
T 2ikf_A 335 DFLRRHLEKARDTAL 349 (353)
T ss_dssp HHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998764
No 7
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=100.00 E-value=1e-51 Score=457.96 Aligned_cols=299 Identities=25% Similarity=0.338 Sum_probs=252.4
Q ss_pred cchhhhhccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhCCCceEEEecce-ecCCCCCCCCceEEEeecCCccch
Q 005380 370 CRADIGRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSC-ANSFGVSKSDIDVCLAINDSEINK 448 (699)
Q Consensus 370 c~~did~L~~eI~~f~~~l~PT~eE~~~R~~ll~~L~~iI~~~~p~a~V~~FGS~-aTGL~lp~SDIDLvL~~~~~~i~k 448 (699)
+++.++.|...|.+......+++++.+.|.+++++|+.+|++.||+++|++|||+ ++|+++|+||||+||+.+......
T Consensus 13 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~l~~~v~~~~p~a~v~~FGS~v~~Gl~lp~SDiDl~~~~~~~~~~~ 92 (468)
T 2b4v_A 13 SPDHYAVWGKAIMAENNRRVGPEHMFRTAIRAQQQLQGLADKWTPDAKVYCCGSMVTYGQMERGSDLDLACMFDDPYPSH 92 (468)
T ss_dssp CHHHHHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEETHHHHHSSCBTTCCEEEEEECSSSSCCH
T ss_pred ChHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeeCchhcCCCCCCCceeEEEecCCCCccc
Confidence 4456788999999999999999999999999999999999999999999999999 699999999999999876422221
Q ss_pred -H--HHHHHHHHHHhcC--C--CcceEEeeeeeeceEEEe----cc----------------------------------
Q 005380 449 -S--EVLLKLADILQSD--N--LQNVQALTRARVPIVKLM----DP---------------------------------- 483 (699)
Q Consensus 449 -~--e~L~kLa~iL~s~--~--~~~V~~I~~ARVPIIKf~----d~---------------------------------- 483 (699)
. ..+.+|++.|++. + +.++++|.+||||||||+ |+
T Consensus 93 ~~~~~~~~~l~~~L~~~~~~~~~~~v~~I~~ArVPIIK~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~ 172 (468)
T 2b4v_A 93 EVQAKRTDKLRTVIKRYVPHYLRNNLLGLTEARTPVVKLRFANDEKVARARYTPLSEEEDRKARTALLDVRNQCVGDNDV 172 (468)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHTTEEEECSSSSCEEEECCCCHHHHHHHHHSCCCHHHHHHHTEEEEEEESCCCCHHHH
T ss_pred hhhHHHHHHHHHHHHHhccccccceeEeccCCCcceEEEEeccccccccccccccccccccccccccccccccccccccc
Confidence 1 2345789999876 5 579999999999999997 21
Q ss_pred ---------------------------------------------------------------------cCCeeEEEEEe
Q 005380 484 ---------------------------------------------------------------------VTGISCDICIN 494 (699)
Q Consensus 484 ---------------------------------------------------------------------~tgI~VDISfn 494 (699)
.+|++|||||+
T Consensus 173 ~~~~~~~~~~n~~~~~~~~~~~~c~~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ld~rf~~~~~gi~~DISfn 252 (468)
T 2b4v_A 173 EYIAEKMGRDNVEGIRVDRTTYGCRIAIQCTSKEQMIEAIGFFPDGKIMTRGMREDYTRDVLDVRFVPEMFMYRWDISFV 252 (468)
T ss_dssp HHHHHHHCGGGEEEEEEEECSSEEEEEEEESSHHHHHHHHTCCCCSSSSCGGGGGGEEEEESCTTSCCGGGSSCEEEESC
T ss_pred cchhhhcccccccccccccccccccceeecccccchhhhhcccccccccccccccccccccccccccccccceEEEEecc
Confidence 14789999998
Q ss_pred cchhhhhhHHHHHHhhcChh-HHHHHHHHHHHHHhcCCCCccCCCCChHHHHHHHHHHhhhc------CCCccccccccc
Q 005380 495 NLLAVVNTKLLRDYAQIDVR-LQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQR------RPAILPCLQGME 567 (699)
Q Consensus 495 n~~Gi~nT~LIr~y~~~dPr-~r~LvllLK~Wak~rgLn~~~~GgLSSYaL~LMVI~FLQ~~------~P~ILP~LQ~l~ 567 (699)
.+|+.||++|+.|++.||+ +|+|+++||+||++++|++++.|+||||+|+||||+|||+. .|+++|++|.+.
T Consensus 253 -~~gi~nS~ll~~y~~~dpr~~r~Lvl~vK~Wak~r~Ln~~~~G~LsSYal~lMVI~fLQ~~~~lP~v~P~vlP~lq~l~ 331 (468)
T 2b4v_A 253 -GYGVKNSYLIRHYLHNGPVAARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYLLVTRQVLWVDPWSLPHPAHLP 331 (468)
T ss_dssp -SHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHTCC-----CCSSCHHHHHHHHHHHHHHTTSSCCCCGGGSCCGGGSC
T ss_pred -hhHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHHhcCcCCCCCcccccchhhcc
Confidence 9999999999999999999 99999999999999999999999999999999999999985 377888888763
Q ss_pred cccceeecCcccccccchhhhcCCCCCCcccHHHHHHHHHHHhhcCCCCCCcEEEecCCccccccccccccc---CCCCC
Q 005380 568 KTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISKQEKDWTRR---IGNDR 644 (699)
Q Consensus 568 ~~~~~~vdd~~~~f~~~~e~l~~~g~~n~~SLgeLLl~FF~yYs~~FD~~~~vISIr~G~~isK~ek~w~~~---~g~~~ 644 (699)
... .| ..+...|..++|+||++||+||+.+|||.+.+||++.|++++|.++.|... .+...
T Consensus 332 ~~~---------~~-------~p~~~~n~~sLg~LL~~FF~yYg~~Fd~~~~vISir~g~~~~K~~~~w~~~~n~~~~~~ 395 (468)
T 2b4v_A 332 RYP---------DF-------SPLYDCDPTELGRLLHGFFIFYAHHFDYEREVVSLNRNRRSYRSDIGWNFPQNKKGTFS 395 (468)
T ss_dssp SSC---------CC-------CCCCCCCHHHHHHHHHHHHHHHHHSSCTTTEEBCSSSSSCEEHHHHTCCCGGGEETTEE
T ss_pred ccc---------CC-------CcccccCccCHHHHHHHHHHHHccccCCCCcEEEecCCcceecccccccccccccCCCc
Confidence 211 01 112345678999999999999999999999999999999999988888642 12234
Q ss_pred cceEEecCCCC----CCCccccCCHhhHHHHHHHHHHHHHHhhcC
Q 005380 645 HLICIEDPFEV----THDLGRVVDKFSIKVLREEFERAAEIMQHD 685 (699)
Q Consensus 645 ~~L~IeDPfdp----~~NlgrsVs~~~i~~Ir~eF~rA~~iL~~~ 685 (699)
+.|||+|||++ ++|+|++|+..++..|+++|++|+++|++.
T Consensus 396 ~~L~IeDPfd~~~~~~~Nvgr~v~~~~~~~I~~eF~~A~~~L~~~ 440 (468)
T 2b4v_A 396 YNFCIEDPYEDVGTGGLNLVRHLHPAKFQLVKQEFLRAAQCMERF 440 (468)
T ss_dssp CSSCBBCSSTTTTTTCCBTTTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred ceEEEECCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 57999999999 999999999999999999999999999863
No 8
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=100.00 E-value=7.2e-44 Score=398.87 Aligned_cols=276 Identities=21% Similarity=0.289 Sum_probs=236.3
Q ss_pred hhccHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHhh----------------CCCceEEEecceecCCCCCCCCce
Q 005380 375 GRLNAPFLAIYES--LIPAEEEKAKQKKLLTLLEKLVCKE----------------WPDARLYLYGSCANSFGVSKSDID 436 (699)
Q Consensus 375 d~L~~eI~~f~~~--l~PT~eE~~~R~~ll~~L~~iI~~~----------------~p~a~V~~FGS~aTGL~lp~SDID 436 (699)
..++.+|.++++. +.||+||.++|++++++|+++|++. .++++|++||||++|+++|+||||
T Consensus 36 ~~~t~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~wv~~v~~~~~~~~~~~~~~~~~v~~FGS~~lG~~~p~SDID 115 (514)
T 1q79_A 36 ALLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADID 115 (514)
T ss_dssp HHHHHHHHHHHGGGTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTTCBCEEEEEHHHHHTCCCTTCCEE
T ss_pred HHhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhcccCCceEEEeeeeccCCCCCCCcee
Confidence 3467778888876 8899999999999999999999852 357999999999999999999999
Q ss_pred EEEeecCCccchHHHHHHHHHHHhc-CCCcceEEeeeeeeceEEEecccCCeeEEEEEecc-------------------
Q 005380 437 VCLAINDSEINKSEVLLKLADILQS-DNLQNVQALTRARVPIVKLMDPVTGISCDICINNL------------------- 496 (699)
Q Consensus 437 LvL~~~~~~i~k~e~L~kLa~iL~s-~~~~~V~~I~~ARVPIIKf~d~~tgI~VDISfnn~------------------- 496 (699)
++|+.+.. ..+.+++..++++|++ ..+.+++.|.+|+||||||++ +|++|||+|++.
T Consensus 116 ~~~v~p~~-~~~~dff~~l~~~L~~~~~v~~v~~I~~A~VPIIK~~~--~gi~vDL~f~~~~~~~~p~~l~l~~~~~L~~ 192 (514)
T 1q79_A 116 ALCVAPRH-VDRSDFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCF--DGIEIDILFARLALQTIPEDLDLRDDSLLKN 192 (514)
T ss_dssp EEEEECTT-SCHHHHTTHHHHHHHTCTTEEEEEEETTSSSCEEEEEE--TTEEEEEEEEECSCSSBCTTCCTTCGGGGTT
T ss_pred EEEecCCc-CCHHHHHHHHHHHHhcCccCceEEEecCCcccEEEEEE--CCeeEEEEEecCCcccCcccccCCchhhhcc
Confidence 99988653 4456788889999986 568899999999999999994 799999999863
Q ss_pred ---------hhhhhhHHHHHHhhcChhHHHHHHHHHHHHHhcCCCCccCCCCChHHHHHHHHHHhhhcCCCccccccccc
Q 005380 497 ---------LAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGME 567 (699)
Q Consensus 497 ---------~Gi~nT~LIr~y~~~dPr~r~LvllLK~Wak~rgLn~~~~GgLSSYaL~LMVI~FLQ~~~P~ILP~LQ~l~ 567 (699)
+|++.+++|..++..++.||.++++||+||++|+||+++.|+||||+|+|||+++||.+ |
T Consensus 193 ld~~~~~slng~r~~d~I~~~vp~~~~fr~llr~IK~Wak~Rgi~~~~~G~lgg~s~~lLVa~~~Ql~-P---------- 261 (514)
T 1q79_A 193 LDIRAIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLY-P---------- 261 (514)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHTTCBCTTTTSBCHHHHHHHHHHHHHHS-T----------
T ss_pred cchhhhhhhhhHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCccccCCccHHHHHHHHHHHHHhC-C----------
Confidence 47778889999999999999999999999999999999999999999999999999986 2
Q ss_pred cccceeecCcccccccchhhhcCCCCCCcccHHHHHHHHHHHhhcCCCCCCcEE--EecCCcccccccccccccCC--CC
Q 005380 568 KTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVI--SVRTGSTISKQEKDWTRRIG--ND 643 (699)
Q Consensus 568 ~~~~~~vdd~~~~f~~~~e~l~~~g~~n~~SLgeLLl~FF~yYs~~FD~~~~vI--SIr~G~~isK~ek~w~~~~g--~~ 643 (699)
..++++||..||+||+ .|||.+.++ .+..|.. ..+.|..+.. ..
T Consensus 262 ----------------------------~~s~~~LL~~FF~~y~-~~dw~~pV~l~~~~~~~l---~~~~w~p~~~~~dr 309 (514)
T 1q79_A 262 ----------------------------NAIASTLVHKFFLVFS-KWEWPNPVLLKQPEECNL---NLPVWDPRVNPSDR 309 (514)
T ss_dssp ----------------------------TCCHHHHHHHHHHHHH-SCCTTSCBCSSCCCCCSS---CCCCCCTTTCGGGG
T ss_pred ----------------------------CCCHHHHHHHHHHHHh-cCCCCCCeEecccCCCCC---CCcccCCccCCcCc
Confidence 1358899999999999 799998765 2333321 2345654321 12
Q ss_pred CcceEEecCCCCCCCccccCCHhhHHHHHHHHHHHHHHhhc---CCCccccccccC
Q 005380 644 RHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQH---DPNPCVKLFEPY 696 (699)
Q Consensus 644 ~~~L~IeDPfdp~~NlgrsVs~~~i~~Ir~eF~rA~~iL~~---~~n~~~~LfeP~ 696 (699)
.+.|+|+||+++.+|+|++|+..++..|++||++|+++|++ ...+|.+||||+
T Consensus 310 ~~~m~IidP~~P~~N~~~nVs~st~~~I~~Ef~rA~~il~~i~~~~~~w~~Lf~~~ 365 (514)
T 1q79_A 310 YHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAP 365 (514)
T ss_dssp GCSSCBBCSSSSCCBTTTTCCHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHTCCC
T ss_pred ccceeEeCCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHhCCc
Confidence 46799999999999999999999999999999999999997 566899999986
No 9
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=100.00 E-value=1.7e-43 Score=397.13 Aligned_cols=276 Identities=20% Similarity=0.325 Sum_probs=236.3
Q ss_pred hhccHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHhh---------CC-------CceEEEecceecCCCCCCCCce
Q 005380 375 GRLNAPFLAIYES--LIPAEEEKAKQKKLLTLLEKLVCKE---------WP-------DARLYLYGSCANSFGVSKSDID 436 (699)
Q Consensus 375 d~L~~eI~~f~~~--l~PT~eE~~~R~~ll~~L~~iI~~~---------~p-------~a~V~~FGS~aTGL~lp~SDID 436 (699)
.+++.+|.++++. +.||+||.+.|++++++|+++|++. .| +++|++|||+++|+++|+||||
T Consensus 23 ~~~~~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~w~~~v~~~~~~~~~~~~~~~~~V~~FGSy~lG~~~p~SDID 102 (530)
T 2hhp_A 23 NKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARDAGGKIFTYGSYRLGVHGPGSDID 102 (530)
T ss_dssp HHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHTBCEEEEEHHHHHTCCCTTCCEE
T ss_pred hhhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhccccCceEEEecccccCCCCCCCcee
Confidence 4567888888888 8899999999999999999999862 12 6999999999999999999999
Q ss_pred EEEeecCCccchHHHHHHHHHHHhc-CCCcceEEeeeeeeceEEEecccCCeeEEEEEecc-------------------
Q 005380 437 VCLAINDSEINKSEVLLKLADILQS-DNLQNVQALTRARVPIVKLMDPVTGISCDICINNL------------------- 496 (699)
Q Consensus 437 LvL~~~~~~i~k~e~L~kLa~iL~s-~~~~~V~~I~~ARVPIIKf~d~~tgI~VDISfnn~------------------- 496 (699)
++|+.+.. +.+.+++..++.+|++ ..+.+++.|..|+||||||+. +|++|||+|++.
T Consensus 103 ~~v~~p~~-~~~~dff~~l~~~L~~~~~v~~v~~I~~A~VPIIK~~~--~gi~vDL~f~~~~~~~ip~~l~l~~~~~L~~ 179 (530)
T 2hhp_A 103 TLVVVPKH-VTREDFFTVFDSLLRERKELDEIAPVPDAFVPIIKIKF--SGISIDLICARLDQPQVPLSLTLSDKNLLRN 179 (530)
T ss_dssp EEEEECTT-CCHHHHHHHHHHHHHTCTTEEEEEEETTSSSCEEEEEE--TTEEEEEEEEECSSSCBCTTCCSCCGGGGTT
T ss_pred EEEecCCc-CCHHHHHHHHHHHHhcCCCCceEEEecCCcccEEEEEE--CCEeeEEEEeccccccCCcccCCCchhhhhc
Confidence 99988753 4556788899999986 467899999999999999994 799999999864
Q ss_pred ---------hhhhhhHHHHHHhhcChhHHHHHHHHHHHHHhcCCCCccCCCCChHHHHHHHHHHhhhcCCCccccccccc
Q 005380 497 ---------LAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGME 567 (699)
Q Consensus 497 ---------~Gi~nT~LIr~y~~~dPr~r~LvllLK~Wak~rgLn~~~~GgLSSYaL~LMVI~FLQ~~~P~ILP~LQ~l~ 567 (699)
+|++.+++|..++..+++||.++++||+||++|+||+++.|+||||+|+|||+++||.+ |
T Consensus 180 ld~~~~~slng~r~~d~I~~~vp~~~~fr~ll~~IK~Wak~Rgl~~~~~G~lgg~~~~~LVa~~lQl~-P---------- 248 (530)
T 2hhp_A 180 LDEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVARICQLY-P---------- 248 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHS-T----------
T ss_pred cchhhhhccchHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCcccccCCcHHHHHHHHHHHHhcC-C----------
Confidence 57888999999999999999999999999999999999999999999999999999985 2
Q ss_pred cccceeecCcccccccchhhhcCCCCCCcccHHHHHHHHHHHhhcCCCCCCcEEEe--cCCcccccccccccccC--CCC
Q 005380 568 KTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISV--RTGSTISKQEKDWTRRI--GND 643 (699)
Q Consensus 568 ~~~~~~vdd~~~~f~~~~e~l~~~g~~n~~SLgeLLl~FF~yYs~~FD~~~~vISI--r~G~~isK~ek~w~~~~--g~~ 643 (699)
..++++||..||+||+ .|||.+.++.. ..|. ...+.|..+. ...
T Consensus 249 ----------------------------~~s~~~LL~~FF~~y~-~~dw~~pV~l~~~~~g~---~~~~~w~p~~~~~d~ 296 (530)
T 2hhp_A 249 ----------------------------NACSAVILNRFFIILS-EWNWPQPVILKPIEDGP---LQVRVWNPKIYAQDR 296 (530)
T ss_dssp ----------------------------TCCHHHHHHHHHHHHH-HCCTTSCEESSCCCCCS---SCSCCCCTTTCHHHH
T ss_pred ----------------------------CCCHHHHHHHHHHHHh-cCCCCCceEecccCCCC---ccccccCcccCCCCC
Confidence 1257899999999999 69999765432 1222 1234564321 112
Q ss_pred CcceEEecCCCCCCCccccCCHhhHHHHHHHHHHHHHHhhc---CCCccccccccC
Q 005380 644 RHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQH---DPNPCVKLFEPY 696 (699)
Q Consensus 644 ~~~L~IeDPfdp~~NlgrsVs~~~i~~Ir~eF~rA~~iL~~---~~n~~~~LfeP~ 696 (699)
.+.|+|+||+++.+|+|++|+..++..|++||++|+++|++ ..++|.+||+|+
T Consensus 297 ~~~m~Ii~P~~P~~N~a~nVs~st~~~I~~Ef~rA~~ll~~i~~~~~~w~~Lf~~~ 352 (530)
T 2hhp_A 297 SHRMPVITPAYPSMCATHNITESTKKVILQEFVRGVQITNDIFSNKKSWANLFEKN 352 (530)
T ss_dssp TCSSCEECSSSSCCBTTTTCCHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHTCCC
T ss_pred ccceeEECCCCCCCccCccCCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHcCCC
Confidence 46899999999999999999999999999999999999997 568999999986
No 10
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=99.62 E-value=2.6e-14 Score=157.03 Aligned_cols=237 Identities=20% Similarity=0.209 Sum_probs=165.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhCCCceEEEecceecCCCCCC-CCceEEEeecCCccchHHHHH----
Q 005380 379 APFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSK-SDIDVCLAINDSEINKSEVLL---- 453 (699)
Q Consensus 379 ~eI~~f~~~l~PT~eE~~~R~~ll~~L~~iI~~~~p~a~V~~FGS~aTGL~lp~-SDIDLvL~~~~~~i~k~e~L~---- 453 (699)
.-+.++.+.+.|+++|.+.-..+.+.|.+.|++ ++ +++...||++.|+++++ |||||.|.++... . .+-|.
T Consensus 5 ~~~~~~l~~i~P~~~E~~~~~~~~~~I~~~L~~-~~-~~v~~~GS~AkgT~Lrg~sDIDIfv~f~~~~-~-~e~l~~~~l 80 (437)
T 1r89_A 5 EILEKALELVIPDEEEVRKGREAEEELRRRLDE-LG-VEYVFVGSYARNTWLKGSLEIDVFLLFPEEF-S-KEELRERGL 80 (437)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHH-HT-CCEEEEHHHHHTCCCTTCCEEEEEEEECTTS-C-HHHHHHHHH
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHh-CC-CeEEEeccccCCCcCCCCCCceEEEEcCCCC-C-HHHHHHHHH
Confidence 346688999999999999999999999999998 43 79999999999999985 8999999987542 2 22222
Q ss_pred -HHHHHHhcCCCcceEEeeeeeeceEEEecccCCeeEEEE--Eec------chhhhhhHHHHHHhhcChh-HHHHHHHHH
Q 005380 454 -KLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDIC--INN------LLAVVNTKLLRDYAQIDVR-LQQLAFIVK 523 (699)
Q Consensus 454 -kLa~iL~s~~~~~V~~I~~ARVPIIKf~d~~tgI~VDIS--fnn------~~Gi~nT~LIr~y~~~dPr-~r~LvllLK 523 (699)
.+.++++. . .+..|.-|-|... .+|++|||. +.- ..++..|.+...|...... ++.+|++||
T Consensus 81 ~~~~e~l~~-----~-~~~ya~hpyV~~~--f~g~~vDVVP~y~v~~g~~~~tavDrtp~H~~fv~~r~~~~~~~VRLLK 152 (437)
T 1r89_A 81 EIGKAVLDS-----Y-EIRYAEHPYVHGV--VKGVEVDVVPCYKLKEPKNIKSAVDRTPFHHKWLEGRIKGKENEVRLLK 152 (437)
T ss_dssp HHHHHHSSS-----E-EEEESSSEEEEEE--ETTEEEEEEEEECCSSSSCCCSHHHHHHHHHHHHTTTSTTCHHHHHHHH
T ss_pred HHHHHHHHH-----h-hhhccCCceEEEE--ecceEEEEEEEEEccCCccccccccCcHHHHHHHHhhhhhhhhHHHHHH
Confidence 22233332 2 2456667877765 358999984 322 1344556788888764322 899999999
Q ss_pred HHHHhcCCCCc--cCCCCChHHHHHHHHHHhhhcCCCccccccccccccceeecCcccccccchhhhcCCCCCCcccHHH
Q 005380 524 HWAKSRGVNVT--YQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGR 601 (699)
Q Consensus 524 ~Wak~rgLn~~--~~GgLSSYaL~LMVI~FLQ~~~P~ILP~LQ~l~~~~~~~vdd~~~~f~~~~e~l~~~g~~n~~SLge 601 (699)
+|++..+++++ +.+|+|||++-||+++|- +...
T Consensus 153 ~f~k~~~~ygse~k~~gfSsYllELLv~~yG---------------------------------------------~f~~ 187 (437)
T 1r89_A 153 GFLKANGIYGAEYKVRGFSGYLCELLIVFYG---------------------------------------------SFLE 187 (437)
T ss_dssp HHHHHTTCBCCSTTTCCBCHHHHHHHHHHHS---------------------------------------------SHHH
T ss_pred HHHHhCCcCCCcccCCCCCHHHHHHHHHHHc---------------------------------------------CHHH
Confidence 99999999886 578999999999999941 0112
Q ss_pred HHHHHHHHhhcCCCCCCcEEEecCCcccccccccccccCCCCCcceEEecCCCCCCCccccCCHhhHHHHHHHHHHHHHH
Q 005380 602 LVWAFFNYWAYGHDYASNVISVRTGSTISKQEKDWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEI 681 (699)
Q Consensus 602 LLl~FF~yYs~~FD~~~~vISIr~G~~isK~ek~w~~~~g~~~~~L~IeDPfdp~~NlgrsVs~~~i~~Ir~eF~rA~~i 681 (699)
+|..+.+ |-- ...|.+.. . ...+ ..+|.|.||.|+++|+|++++..++..|..+ |...
T Consensus 188 vl~~~~~-----w~~-~~~Id~~~-----~-~~~~-------~~PlvViDPvDp~rNVAa~~s~~~~~~~~~~---a~~~ 245 (437)
T 1r89_A 188 TVKNARR-----WTR-RTVIDVAK-----G-EVRK-------GEEFFVVDPVDEKRNVAANLSLDNLARFVHL---CREF 245 (437)
T ss_dssp HHHHHTT-----CCT-TEEEEGGG-----T-EEEE-------CSSCEEEETTEEEEETTTTCCHHHHHHHHHH---HHHH
T ss_pred HHHHHHH-----hCC-CeEEecCC-----C-cccC-------CCCEEEECCCCCCCchhhcCCHHHHHHHHHH---HHHH
Confidence 2222221 111 22343330 0 1111 2469999999999999999988887777644 4455
Q ss_pred hhcCCCccccccccCC
Q 005380 682 MQHDPNPCVKLFEPYV 697 (699)
Q Consensus 682 L~~~~n~~~~LfeP~~ 697 (699)
|+ +|..+.|.|.-
T Consensus 246 l~---~ps~~~f~~~~ 258 (437)
T 1r89_A 246 ME---APSLGFFKPKH 258 (437)
T ss_dssp HH---SCCGGGGSCCC
T ss_pred Hh---CccHHhcCCCC
Confidence 55 66677777653
No 11
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=99.44 E-value=1.7e-11 Score=131.19 Aligned_cols=257 Identities=15% Similarity=0.204 Sum_probs=151.0
Q ss_pred HHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhh-CCC-------ceEEEecceecCCCCC-CCCceEEEeecCCc-cc--
Q 005380 381 FLAIY-ESLIPAEEEKAKQKKLLTLLEKLVCKE-WPD-------ARLYLYGSCANSFGVS-KSDIDVCLAINDSE-IN-- 447 (699)
Q Consensus 381 I~~f~-~~l~PT~eE~~~R~~ll~~L~~iI~~~-~p~-------a~V~~FGS~aTGL~lp-~SDIDLvL~~~~~~-i~-- 447 (699)
+.+|. +.+.|+.++.+.-+..++.|...|++. +.+ .++...||++.|++++ .|||||+|.++... ..
T Consensus 11 l~~fi~~~l~p~~~~~~~i~~~~~~I~~~L~~~~~~~~~~~~~v~~v~~~GSyargT~lrg~sDiDlvV~l~~~~~~~~~ 90 (349)
T 1px5_A 11 LDKFIEDHLLPNTXFRTQVKEAIDIVXRFLKERCFQGTADPVRVSKVVKGGSSGKGTTLRGRSDADLVVFLTKLTSFEDQ 90 (349)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEEEEEC--------CEEEEEEEEEESCSCTTHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhhcccccCCcceEEEEEecCcCCCcccCCCCceeEEEEECCCCchhhH
Confidence 55666 889999999999999999999999885 321 2678899999999998 58999999887532 11
Q ss_pred ---hHHHHHHHHHHHhc----CCCc-ceEEe-eeeeec-eEEEec----ccCCeeEEEEE--ecch--------------
Q 005380 448 ---KSEVLLKLADILQS----DNLQ-NVQAL-TRARVP-IVKLMD----PVTGISCDICI--NNLL-------------- 497 (699)
Q Consensus 448 ---k~e~L~kLa~iL~s----~~~~-~V~~I-~~ARVP-IIKf~d----~~tgI~VDISf--nn~~-------------- 497 (699)
..+++..+.+.|.. ..+. .+++. ..-+.| .|.+.- ...+++|||.- ....
T Consensus 91 ~~~~~~~l~~i~~~L~~~~~~~~~~~~~ev~~~~~~~p~~v~~~~~~~~~~~~~~vDVvPa~~~l~~~~~~~~~~~~~y~ 170 (349)
T 1px5_A 91 LRRRGEFIQEIRRQLEACQREQKFKVTFEVQSPRRENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYV 170 (349)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHCCCSSEEEECCC------CCEEEEEETTTTEEEEEEEEEEECSSCSCCTTSCCCHHHHH
T ss_pred HhhHHHHHHHHHHHHHHhhhhhccccceeEecccccCCceEEEEEEccCcCCceEEEEEEehhhhcccccccCCChHHHH
Confidence 13456666666653 2232 23321 011244 244432 12468899743 3210
Q ss_pred -hh--------------hhhHHHHHHhhc-ChhHHHHHHHHHHHHHhcCCCCccCCCCChHHHHHHHHHHhhhcCCCccc
Q 005380 498 -AV--------------VNTKLLRDYAQI-DVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILP 561 (699)
Q Consensus 498 -Gi--------------~nT~LIr~y~~~-dPr~r~LvllLK~Wak~rgLn~~~~GgLSSYaL~LMVI~FLQ~~~P~ILP 561 (699)
.+ ..+++...|++. ...++.|+++||+|.+..+.. ....+++||+|.+|+++.......
T Consensus 171 ~li~~~~~~~~~g~~~~~~~~~h~~~v~~~~~~~k~lIRLlK~W~~~~~~~-~~~~~~ssy~lELL~~~a~e~~~~---- 245 (349)
T 1px5_A 171 QLIKECKSRGKEGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKT-HGNKLPPQYALELLTVYAWEQGSR---- 245 (349)
T ss_dssp HHHHHHHHHTCTTTTGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHTT-CSSCCCCHHHHHHHHHHHHHHHTC----
T ss_pred HHHhhccccccCccchhcCHHHHHHHHHhCcHHHHHHHHHHHHHHHHhhhc-ccCCCCChHHHHHHHHHHHHhCCC----
Confidence 11 113444445433 347899999999999887642 235789999999999998776410
Q ss_pred cccccccccceeecCcccccccchhhhcCCCCCCcccHHHHHHHHHHHhhcCCCCCCcEEEecCCccccccc---ccccc
Q 005380 562 CLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISKQE---KDWTR 638 (699)
Q Consensus 562 ~LQ~l~~~~~~~vdd~~~~f~~~~e~l~~~g~~n~~SLgeLLl~FF~yYs~~FD~~~~vISIr~G~~isK~e---k~w~~ 638 (699)
....++.+-|..+|++-+ +|....|.... +..... ..+..
T Consensus 246 --------------------------------~~~~~~~~~f~~vle~l~---~~~~~~i~w~~--~y~~~~~~~~~fl~ 288 (349)
T 1px5_A 246 --------------------------------KTDFSTAQGFQTVLELVL---KHQKLCIFWEA--YYDFTNPVVGRCML 288 (349)
T ss_dssp --------------------------------CSSCCHHHHHHHHHHHHH---TGGGCEECCCS--SCCSSSHHHHHHHH
T ss_pred --------------------------------ccCCCHHHHHHHHHHHHH---hCCccceeeec--cccccchhHHhhhh
Confidence 012356788899999877 34433332211 110000 00100
Q ss_pred cCCCCCcceEEecCCCCCCCccccCCHhhHHHHHHHHHHHHHHhhc
Q 005380 639 RIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQH 684 (699)
Q Consensus 639 ~~g~~~~~L~IeDPfdp~~NlgrsVs~~~i~~Ir~eF~rA~~iL~~ 684 (699)
.. -......|.||.++++|+|.+ +...+..+. ..|...|++
T Consensus 289 ~~-l~~~~p~I~DP~dp~~NVa~~-~~~~~~~~~---~~A~~~l~~ 329 (349)
T 1px5_A 289 QQ-LKKPRPVILDPADPTGNVGGG-DTHSWQRLA---QEARVWLGY 329 (349)
T ss_dssp HH-HTSSSCEEBCTTCTTCBTTCS-CHHHHHHHH---HHHHHHTTS
T ss_pred hh-hcCCCCeeeCCCCCCCcccCC-chhhHHHHH---HHHHHHHhc
Confidence 00 001235899999999999987 777776665 566666764
No 12
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A*
Probab=98.55 E-value=1.9e-06 Score=92.34 Aligned_cols=242 Identities=14% Similarity=0.183 Sum_probs=163.8
Q ss_pred hhhccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhC--CC------ceEEEecceecCCCCCCC-CceEEEeecCC
Q 005380 374 IGRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEW--PD------ARLYLYGSCANSFGVSKS-DIDVCLAINDS 444 (699)
Q Consensus 374 id~L~~eI~~f~~~l~PT~eE~~~R~~ll~~L~~iI~~~~--p~------a~V~~FGS~aTGL~lp~S-DIDLvL~~~~~ 444 (699)
-..|++.|++=-..+.||++|+..-..++.+|+.+|.+.. |+ ..|...||++.|+++.++ |+|+||++...
T Consensus 24 d~~~~~~llkr~~~l~Ps~eEq~~v~~lv~kI~~~ld~liv~pg~~e~~L~~V~rVGs~aKgtll~G~~~~dlVvl~k~l 103 (364)
T 4at7_A 24 ETSFSEALLKRNQDLAPNSAEQASILSLVTKINNVIDNLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKIL 103 (364)
T ss_dssp CHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSCEEEEEEEHHHHHTCCCTTCCEEEEEEEESSC
T ss_pred hHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHHHHHHhhhcCCCccccccceeEEeccccCCceecCCCceeEEEEecCC
Confidence 3467888888889999999999999999999999988643 32 368899999999999976 99999988654
Q ss_pred ccch--HHHHHHHHHHHhcCC-CcceE--------EeeeeeeceEEEe-----------cccCCeeEEEEEecchhhhhh
Q 005380 445 EINK--SEVLLKLADILQSDN-LQNVQ--------ALTRARVPIVKLM-----------DPVTGISCDICINNLLAVVNT 502 (699)
Q Consensus 445 ~i~k--~e~L~kLa~iL~s~~-~~~V~--------~I~~ARVPIIKf~-----------d~~tgI~VDISfnn~~Gi~nT 502 (699)
+... ..++.++.+.|+... -..+. .|..+. ..+++. ++..-++..++.....+++.+
T Consensus 104 PT~e~v~~L~~kV~e~L~~q~~~e~~~~~~~e~~~~I~~~~-~~v~i~It~tsp~lrk~dp~~~Ld~~~cl~aLaalRhA 182 (364)
T 4at7_A 104 PTLEAVAALGNKVVESLRAQDPSEVLTMLTNETGFEISSSD-ATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIRHA 182 (364)
T ss_dssp CBHHHHHHHHHHHHHHHHHHCTTSCCEEEEETTEEEEECSS-CEEEEEEEECHHHHHTCCTTTBCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhhccccceeeccCcceEEEecCC-CcEEEEEEeCChhhccCChhHhcCHHHHHHHHHHhhhh
Confidence 3211 124566777666421 11111 111111 111111 111112222333445677888
Q ss_pred HHHHHHhhcChhHHHHHHHHHHHHHhcCCCCccCCCCChHHHHHHHHHHhhhcCCCccccccccccccceeecCcccccc
Q 005380 503 KLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIECAYF 582 (699)
Q Consensus 503 ~LIr~y~~~dPr~r~LvllLK~Wak~rgLn~~~~GgLSSYaL~LMVI~FLQ~~~P~ILP~LQ~l~~~~~~~vdd~~~~f~ 582 (699)
+++++-+. ...++.+++++|..+++. ...+.|+.|++-+|+.+-+-.. +
T Consensus 183 kWfq~na~-~s~v~~lIRIlkDlc~R~----~~w~pL~~waLELL~~~Ai~s~-~------------------------- 231 (364)
T 4at7_A 183 RWFEENAS-QSTVKVLIRLLKDLRIRF----PGFEPLTPWILDLLGHYAVMNN-P------------------------- 231 (364)
T ss_dssp HHHHHHCC-CHHHHHHHHHHHHHHHHC----GGGTTCCHHHHHHHHHHHHHSS-T-------------------------
T ss_pred HHHHhhcc-ccccceeehhhHHHHHhc----CCcCCCCHHHHHHHHHHHHhcC-C-------------------------
Confidence 88887544 477889999999966554 3346899999999998866553 1
Q ss_pred cchhhhcCCCCCCcccHHHHHHHHHHHhhcCCCCCCcEEEecCCcccccccccccccCCCCCcceEEecCCCC-CCCccc
Q 005380 583 DQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISKQEKDWTRRIGNDRHLICIEDPFEV-THDLGR 661 (699)
Q Consensus 583 ~~~e~l~~~g~~n~~SLgeLLl~FF~yYs~~FD~~~~vISIr~G~~isK~ek~w~~~~g~~~~~L~IeDPfdp-~~Nlgr 661 (699)
.....++++.|..+|+.-+. |-.++.. --|.||.+. ..++..
T Consensus 232 ----------~~~~l~~~~afRRVLElLAs-------------Gillp~~--------------~Gi~DPCE~~~~~v~~ 274 (364)
T 4at7_A 232 ----------TRQPLALNVAYRRCLQILAA-------------GLFLPGS--------------VGITDPCESGNFRVHT 274 (364)
T ss_dssp ----------TSSCCCHHHHHHHHHHHHHT-------------TTTSTTB--------------CCCBCTTSSSCCBGGG
T ss_pred ----------CCCCcCHHHHHHHHHHHHHh-------------CcccCCC--------------CCCcCCCCCCCcchhc
Confidence 01235789999999999983 3233221 346799997 577888
Q ss_pred cCCHhhHHHHHHHHHHHHHHhhc
Q 005380 662 VVDKFSIKVLREEFERAAEIMQH 684 (699)
Q Consensus 662 sVs~~~i~~Ir~eF~rA~~iL~~ 684 (699)
.++....+.|....+.+.++|..
T Consensus 275 ~lt~qq~e~it~sAQ~~LRllaf 297 (364)
T 4at7_A 275 VMTLEQQDMVCYTAQTLVRILSH 297 (364)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHh
Confidence 88887778888888888888876
No 13
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=97.75 E-value=9.9e-05 Score=66.60 Aligned_cols=43 Identities=19% Similarity=0.370 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhhCCCceEEEecceecCCCCCCCCceEEEeecC
Q 005380 401 LLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAIND 443 (699)
Q Consensus 401 ll~~L~~iI~~~~p~a~V~~FGS~aTGL~lp~SDIDLvL~~~~ 443 (699)
.++.|..++++.++...+++|||++.|-+.++|||||+|....
T Consensus 13 ~~~~i~~~l~~~~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~ 55 (114)
T 1no5_A 13 ELAIVKTILQQLVPDYTVWAFGSRVKGKAKKYSDLDLAIISEE 55 (114)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEGGGTTTCCCTTCCEEEEEECSS
T ss_pred HHHHHHHHHHHhCCCCEEEEEeccCCCCCCCCCCeEEEEEeCC
Confidence 3455677777777788999999999999999999999998754
No 14
>4at7_B NF90, interleukin enhancer-binding factor 3; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_B* 4at9_B* 4atb_B*
Probab=97.68 E-value=0.0044 Score=67.02 Aligned_cols=230 Identities=16% Similarity=0.178 Sum_probs=143.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhC-------------------------------------CC----ceEE
Q 005380 381 FLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEW-------------------------------------PD----ARLY 419 (699)
Q Consensus 381 I~~f~~~l~PT~eE~~~R~~ll~~L~~iI~~~~-------------------------------------p~----a~V~ 419 (699)
++.=...+-|+++|.+.-++++..++.+++..- .. .-|.
T Consensus 16 vmaKH~~IyP~~eel~avq~~Vs~~EraLK~VSD~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~L~GVM 95 (383)
T 4at7_B 16 VMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGNSELSEAENMDTPPDDESKEGAGEQKAEHMTRTLRGVM 95 (383)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------CCEEEEE
T ss_pred hhhhhcccCCCHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccCccccccccccCCccccccccccccccCCccceeeeee
Confidence 344557789999999999999999998885210 00 1366
Q ss_pred EecceecCCCCCC-CCceEEEeecCCccchHHHHHHHHHHH----hcCC--CcceE-EeeeeeeceEEEecccCCeeEEE
Q 005380 420 LYGSCANSFGVSK-SDIDVCLAINDSEINKSEVLLKLADIL----QSDN--LQNVQ-ALTRARVPIVKLMDPVTGISCDI 491 (699)
Q Consensus 420 ~FGS~aTGL~lp~-SDIDLvL~~~~~~i~k~e~L~kLa~iL----~s~~--~~~V~-~I~~ARVPIIKf~d~~tgI~VDI 491 (699)
-.|+++-|+.+.+ -++||||++...+ ..+++.++++.| +... -..|. ....|.+=| .......+.|-|
T Consensus 96 RVG~laKGlLLkGd~~veLVvlck~kP--T~~ll~~va~~L~~qL~~~t~~~y~v~~~~~ea~i~i--~~~~~p~~~v~I 171 (383)
T 4at7_B 96 RVGLVAKGLLLKGDLDLELVLLCKEKP--TTALLDKVADNLAIQLTTVTEDKYEILQSVDDAAIVI--KNTKEPPLSLTI 171 (383)
T ss_dssp ECHHHHHTCCCTTCCEEEEEEEESSCC--BHHHHHHHHHHHHHHHTTTCCCCCEEEEEGGGTEEEE--ECSSSSCCEEEE
T ss_pred EeceecccceECCCCceeEEEEeCCCC--cHHHHHHHHHHHHHHHhhccCCceEEeecCCcceEEE--ecCCCCCeEEEE
Confidence 7899999999975 5999999886533 345666666555 3211 11121 112221111 111122355555
Q ss_pred EEecc---------------------------------hhhhhhHHHHHHhhcChhHHHHHHHHHHHHHhcCCCCccCCC
Q 005380 492 CINNL---------------------------------LAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGT 538 (699)
Q Consensus 492 Sfnn~---------------------------------~Gi~nT~LIr~y~~~dPr~r~LvllLK~Wak~rgLn~~~~Gg 538 (699)
++.+. .+++.++++++-+..-+....|++++|..+++. ...+.
T Consensus 172 ~lTSp~~re~~~~~~~~~~~~~~dp~d~Ld~~~cl~aLAalRhAkWFqara~~l~s~~ilIRilkdlc~R~----~~~~p 247 (383)
T 4at7_B 172 HLTSPVVREEMEKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRV----PTWGP 247 (383)
T ss_dssp EEECHHHHHHHHHHHTTCCCCCCCCTTBCCHHHHHHHHHHHHHHHHCCCCCTTSTTHHHHHHHHHHHHHHC----GGGGG
T ss_pred EECCcccccchhhcccccccccCChhhcCCHHHHHHHHHHhhhhHHHHHhcccCCCceEEeehhhHHHHhc----CCcCC
Confidence 55432 223333333332232335678888999865554 23357
Q ss_pred CChHHHHHHHHHHhhhcCCCccccccccccccceeecCcccccccchhhhcCCCCCCcccHHHHHHHHHHHhhcCCCCCC
Q 005380 539 LSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYAS 618 (699)
Q Consensus 539 LSSYaL~LMVI~FLQ~~~P~ILP~LQ~l~~~~~~~vdd~~~~f~~~~e~l~~~g~~n~~SLgeLLl~FF~yYs~~FD~~~ 618 (699)
|+.|++-+|+.+-+-... ...++++.|..+|+.-+.
T Consensus 248 L~~waLELL~~~ai~s~~--------------------------------------~~l~~~~afRRVLEllas------ 283 (383)
T 4at7_B 248 LRGWPLELLCEKSIGTAN--------------------------------------RPMGAGEALRRVLECLAS------ 283 (383)
T ss_dssp GTTHHHHHHHHHHHHTSS--------------------------------------SCCCHHHHHHHHHHHHHT------
T ss_pred CcHhHHHHHHHHHhhCCC--------------------------------------CCCCHHHHHHHHHHHHhc------
Confidence 889999999888764311 124689999999999993
Q ss_pred cEEEecCCcccccccccccccCCCCCcceEEecCCC--CCCCccccCCHhhHHHHHHHHHHHHHHhhc
Q 005380 619 NVISVRTGSTISKQEKDWTRRIGNDRHLICIEDPFE--VTHDLGRVVDKFSIKVLREEFERAAEIMQH 684 (699)
Q Consensus 619 ~vISIr~G~~isK~ek~w~~~~g~~~~~L~IeDPfd--p~~NlgrsVs~~~i~~Ir~eF~rA~~iL~~ 684 (699)
|-.++. .-.|.||.+ +.++++ .++....+.|..+.+.+.+++..
T Consensus 284 -------G~lLp~--------------~pgI~DPcEk~pt~~~~-~lt~qq~e~it~sAQ~~LR~~af 329 (383)
T 4at7_B 284 -------GIVMPD--------------GSGIYDPCEKEATDAIG-HLDRQQREDITQSAQHALRLAAF 329 (383)
T ss_dssp -------TTTSTT--------------SCCCBCTTCSSCCBTTT-TCCHHHHHHHHHHHHHHHHHHHT
T ss_pred -------CcccCC--------------CCCccCCCCCCCccccc-cCCHHHHHHHHHHHHHHHHHHhh
Confidence 222211 145779999 778887 67888888899888888888776
No 15
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=97.65 E-value=8.1e-05 Score=65.31 Aligned_cols=43 Identities=30% Similarity=0.421 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhhCCCceEEEecceecCCCCCC-CCceEEEeecC
Q 005380 401 LLTLLEKLVCKEWPDARLYLYGSCANSFGVSK-SDIDVCLAIND 443 (699)
Q Consensus 401 ll~~L~~iI~~~~p~a~V~~FGS~aTGL~lp~-SDIDLvL~~~~ 443 (699)
+++.+...+++.++..++++|||++.|-+.++ |||||+|+.+.
T Consensus 3 ~l~~i~~~l~~~~~~~~v~LFGS~ArG~~~~~~SDiDllV~~~~ 46 (96)
T 1ylq_A 3 HMKEIKEITKKDVQDAEIYLYGSVVEGDYSIGLSDIDVAIVSDV 46 (96)
T ss_dssp HHHHHHHHHHHHCTTCEEEEESHHHHCCSSSCCCSEEEEEECGG
T ss_pred HHHHHHHHHHHHcCCcEEEEEEEEEeCCCCCCCCceEEEEEeCC
Confidence 46778888888898899999999999999999 99999997754
No 16
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=97.17 E-value=0.00048 Score=60.58 Aligned_cols=38 Identities=24% Similarity=0.405 Sum_probs=30.0
Q ss_pred HHHHHHhhCCCceEEEecceecCCCCCCCCceEEEeecC
Q 005380 405 LEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAIND 443 (699)
Q Consensus 405 L~~iI~~~~p~a~V~~FGS~aTGL~lp~SDIDLvL~~~~ 443 (699)
++.+++. ++-..+++|||++.|-+.++|||||+|....
T Consensus 16 i~~l~~~-~~v~~v~LFGS~arG~~~~~SDiDl~V~~~~ 53 (98)
T 1wot_A 16 VLSLCAR-HGAVRVRVFGSVARGEAREDSDLDLLVAFEE 53 (98)
T ss_dssp HHHHHHH-HTCSSCEECSHHHHTCCCTTCCCEEEECCCS
T ss_pred HHHHHHH-cCCcEEEEEccccCCCCCCCCCEEEEEEeCC
Confidence 3444433 4567899999999999999999999997653
No 17
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=97.02 E-value=0.00077 Score=60.93 Aligned_cols=46 Identities=28% Similarity=0.569 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHH---HhhCCC-ceEEEecceecCCCCCCCCceEEEeecC
Q 005380 398 QKKLLTLLEKLV---CKEWPD-ARLYLYGSCANSFGVSKSDIDVCLAIND 443 (699)
Q Consensus 398 R~~ll~~L~~iI---~~~~p~-a~V~~FGS~aTGL~lp~SDIDLvL~~~~ 443 (699)
+..+++.++.++ .+.+++ ..+++|||++.|-+.++|||||+|....
T Consensus 12 ~~~i~~~l~~~~~~l~~~~~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~ 61 (111)
T 2rff_A 12 QIRMLKLAKEIVEEVASSFPNLEEVYIFGSRARGDYLDTSDIDILFVFKG 61 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTEEEEEEESHHHHSCCCTTCCEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHcCCccEEEEEeeeecCCCCCCCCEEEEEEecC
Confidence 344444444444 345655 5799999999999999999999998754
No 18
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A*
Probab=96.24 E-value=0.0052 Score=63.20 Aligned_cols=44 Identities=23% Similarity=0.275 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhhCCC-ceEEEecceecCCCCCCCCceEEEeecCC
Q 005380 401 LLTLLEKLVCKEWPD-ARLYLYGSCANSFGVSKSDIDVCLAINDS 444 (699)
Q Consensus 401 ll~~L~~iI~~~~p~-a~V~~FGS~aTGL~lp~SDIDLvL~~~~~ 444 (699)
.++.+.+.|.+.+++ .+|.+|||++.|-+.++|||||+|++...
T Consensus 25 eL~~ive~L~~~~~~i~~I~LFGS~ARG~~~~~SDIDilVv~~~~ 69 (272)
T 4ebj_A 25 TIARWVDRLREEYADAVAILLKGSYARGDAATWSDIDFDVLVSTQ 69 (272)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEHHHHHTCCCTTCCEEEEEEESST
T ss_pred HHHHHHHHHHHhcCCceEEEEEeceeCCCCCCCCceEEEEEecCC
Confidence 344555555666775 57999999999999999999999988653
No 19
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A
Probab=95.90 E-value=0.0051 Score=62.77 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhhCC--CceEEEecceecCCCCCCCCceEEEeecC
Q 005380 399 KKLLTLLEKLVCKEWP--DARLYLYGSCANSFGVSKSDIDVCLAIND 443 (699)
Q Consensus 399 ~~ll~~L~~iI~~~~p--~a~V~~FGS~aTGL~lp~SDIDLvL~~~~ 443 (699)
..+++.+...+.+.++ -..|.+|||++.|-+.++|||||+|+...
T Consensus 13 ~~~~~~~~~~l~~~~~~~~~~~~lfGS~arg~~~~~SDiD~~v~~~~ 59 (253)
T 1kny_A 13 MKIVHEIKERILDKYGDDVKAIGVYGSLGRQTDGPYSDIEMMCVMST 59 (253)
T ss_dssp HHHHHHHHHHHHHHHGGGEEEEEEEHHHHHTCCCTTCCEEEEEEESS
T ss_pred HHHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCCCCCeeEEEEecC
Confidence 3455566666666776 46799999999999999999999988754
No 20
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A*
Probab=93.19 E-value=0.35 Score=50.60 Aligned_cols=92 Identities=21% Similarity=0.208 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCc-eEEEecceecCCCCCCCCceEEEeecC---CccchHHHHHHHHHHHhcCCCcceEEee
Q 005380 396 AKQKKLLTLLEKLVCKEWPDA-RLYLYGSCANSFGVSKSDIDVCLAIND---SEINKSEVLLKLADILQSDNLQNVQALT 471 (699)
Q Consensus 396 ~~R~~ll~~L~~iI~~~~p~a-~V~~FGS~aTGL~lp~SDIDLvL~~~~---~~i~k~e~L~kLa~iL~s~~~~~V~~I~ 471 (699)
...+.+++.|.+.+++ .+.+ .|.++||+++|-.-..|||||++++.. ........+..++.++-. ..
T Consensus 22 ~~~~e~l~~I~~~~~~-d~~i~av~l~GS~~~~~~D~~SD~Di~~vV~~~~~~~f~~~~Wl~~fG~~~~~--------f~ 92 (287)
T 3jz0_A 22 LKQKELIANVKNLTES-DERITACMMYGSFTKGEGDQYSDIEFYIFLKHSITSNFDSSNWLFDVAPYLML--------YK 92 (287)
T ss_dssp CHHHHHHHHHHHHHHH-CTTEEEEEECSGGGTTCCCTTCCEEEEEEECGGGTTTCCHHHHHHHHCCEEEE--------EE
T ss_pred cCHHHHHHHHHHHHhc-CCCEEEEEEECCccCCCCCCccceeEEEEEcCcchhhhhhHHHHHHhhhhheE--------ee
Confidence 3345567777777665 3344 588999999999899999999998754 223344455555432211 11
Q ss_pred eeeec-eEEEecccCCeeEEEEEecchhh
Q 005380 472 RARVP-IVKLMDPVTGISCDICINNLLAV 499 (699)
Q Consensus 472 ~ARVP-IIKf~d~~tgI~VDISfnn~~Gi 499 (699)
....- ++-| ..|+.||+.|-....+
T Consensus 93 ~~~~~~l~lF---~Dg~riDl~l~~~~~l 118 (287)
T 3jz0_A 93 NEYGTEVVIF---DNLIRGEFHFLSEKDM 118 (287)
T ss_dssp CTTSCEEEEE---TTSCEEEEEEEEGGGG
T ss_pred cccceEEEEe---cCCcEEEEEEeeHHHH
Confidence 11111 2333 3699999999765544
No 21
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=89.91 E-value=1.3 Score=47.13 Aligned_cols=127 Identities=14% Similarity=0.048 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHhhCCCceEEEecceecCCCCCCCCceEEEeecCCccch---HHHHHHHHHHHhcCC-CcceEEeeeee
Q 005380 399 KKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINK---SEVLLKLADILQSDN-LQNVQALTRAR 474 (699)
Q Consensus 399 ~~ll~~L~~iI~~~~p~a~V~~FGS~aTGL~lp~SDIDLvL~~~~~~i~k---~e~L~kLa~iL~s~~-~~~V~~I~~AR 474 (699)
..+.+.|...++...|.+++.+-|||.-|-.+ ..||||+|..+...... ..++..+...|.+.+ +..+......+
T Consensus 156 ~~ia~~i~~~l~~~~~~~~v~i~GS~RRgket-~gDiDilit~~~~~~~~~~~~~l~~~v~~~l~~~~~v~~~l~~g~~k 234 (335)
T 2fmp_A 156 LQMQDIVLNEVKKVDSEYIATVCGSFRRGAES-SGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETK 234 (335)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEECHHHHTTCSE-ESSEEEEEECTTBCSSCBCSSCHHHHHHHHHHHTTSEEEEEEECSSE
T ss_pred HHHHHHHHHHHHhcCCCcEEEeccccccccCc-cCCeEEEEECCCccccccchhhhHHHHHHHHHhCCcceeeeecCCce
Confidence 45667777777888889999999999988766 56999999876321111 134566666666544 33333333334
Q ss_pred eceE-EEeccc-----CCeeEEEEEecchhhhhhHHHHHHhhcChhHHHHHHHHHHHHHhcCCC
Q 005380 475 VPIV-KLMDPV-----TGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVN 532 (699)
Q Consensus 475 VPII-Kf~d~~-----tgI~VDISfnn~~Gi~nT~LIr~y~~~dPr~r~LvllLK~Wak~rgLn 532 (699)
+=+| ++.... .++.|||-+......-.+-+--+= =+...+-++.||+++|+.
T Consensus 235 ~~~v~~l~~~~~~~~~~~~rVDl~~vp~~~~~~aLl~fTG------S~~fnr~lR~~A~~kG~k 292 (335)
T 2fmp_A 235 FMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTG------SDIFNKNMRAHALEKGFT 292 (335)
T ss_dssp EEEEECCCCCTTCCCCCCEEEEEEECCGGGHHHHHHHHHC------CHHHHHHHHHHHHHTTEE
T ss_pred EEEEEEeCCcccccCCCceEEEEEEECHHHHHHHHHHhhC------CHHHHHHHHHHHHHcCCc
Confidence 3322 222111 389999999866554433322111 123446778889888764
No 22
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=87.97 E-value=2.3 Score=45.22 Aligned_cols=126 Identities=13% Similarity=0.129 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhhCCCceEEEecceecCCCCCCCCceEEEeecCCccchHHHHHHHHHHHhcCCC-cceEEe----e-e
Q 005380 399 KKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLADILQSDNL-QNVQAL----T-R 472 (699)
Q Consensus 399 ~~ll~~L~~iI~~~~p~a~V~~FGS~aTGL~lp~SDIDLvL~~~~~~i~k~e~L~kLa~iL~s~~~-~~V~~I----~-~ 472 (699)
..+.+.|...++...|.+.+.+-|||.-|-.+ ..||||+|..+... ....++.++...|.+.++ ..+... . .
T Consensus 153 ~~ia~~i~~~l~~~~~~~~v~i~GS~RRgket-~gDiDilit~~~~~-~~~~ll~~v~~~l~~~~~i~~~l~~~~~~g~~ 230 (335)
T 2bcq_A 153 TEIEQTVQKAAQAFNSGLLCVACGSYRRGKAT-CGDVDVLITHPDGR-SHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQ 230 (335)
T ss_dssp HHHHHHHHHHHHTTCTTCEEEECHHHHTTCSE-ESSEEEEEECTTSS-TTTTCHHHHHHHHHHTTCEEEEEECCTTSTTC
T ss_pred HHHHHHHHHHHHhcCCCcEEEEccccccCCCC-CCCeEEEEecCCch-hhhhHHHHHHHHHHhCCchHHHhhccccCCCC
Confidence 45667777778888889999999999988766 56999999876533 223456666667766443 222111 0 1
Q ss_pred eee-ceEEEec-ccCCeeEEEEEecchhhhhhHHHHHHhhcChhHHHHHHHHHHHHHhcCCC
Q 005380 473 ARV-PIVKLMD-PVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVN 532 (699)
Q Consensus 473 ARV-PIIKf~d-~~tgI~VDISfnn~~Gi~nT~LIr~y~~~dPr~r~LvllLK~Wak~rgLn 532 (699)
.++ =|.++.. ...++.|||-+......-.+-+--+ -=+...+-++.||+++|+.
T Consensus 231 ~k~~~v~~l~~~~~~~~rVDl~~vp~~~~g~ALl~fT------GS~~fnr~lR~~A~~~G~k 286 (335)
T 2bcq_A 231 QKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFT------GSAHFNRSMRALAKTKGMS 286 (335)
T ss_dssp CEEEEEECCSSTTCCCEEEEEEECCGGGHHHHHHHHH------CCHHHHHHHHHHHHHTTCE
T ss_pred ceEEEEEEccCCCCCceEEEEEEECHHHHHHHHHHhh------CCHHHHHHHHHHHHHcCCC
Confidence 122 1112211 1268999999986655443332211 1123446788999998774
No 23
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=80.94 E-value=6.1 Score=42.35 Aligned_cols=63 Identities=24% Similarity=0.266 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhhCCCceEEEecceecCCCCCCCCceEEEeecCCccchHHHHHHHHHHHhcCC
Q 005380 399 KKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLADILQSDN 463 (699)
Q Consensus 399 ~~ll~~L~~iI~~~~p~a~V~~FGS~aTGL~lp~SDIDLvL~~~~~~i~k~e~L~kLa~iL~s~~ 463 (699)
..+.+.|...++...|.+++.+-|||.-|--+ ..||||+|..+.... ...++.++...|.+.+
T Consensus 160 ~~i~~~i~~~l~~~~~~~~v~i~GSyRRgket-~gDvDilit~~~~~~-~~~ll~~v~~~L~~~~ 222 (360)
T 2ihm_A 160 EALQQLIEAAVRQTLPGATVTLTGGFRRGKLQ-GHDVDFLITHPEEGQ-EVGLLPKVMSCLQSQG 222 (360)
T ss_dssp HHHHHHHHHHHHTTCTTCEEEECHHHHTTCSE-ESEEEEEEECSSTTT-TTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCcEEEEccccccCCCc-cCCeEEEEecCChhh-hhhHHHHHHHHHHhCC
Confidence 45667777788888899999999999988766 569999998765432 2246777777776544
No 24
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=79.37 E-value=11 Score=40.75 Aligned_cols=64 Identities=17% Similarity=0.277 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhhCCCceEEEecceecCCCCCCCCceEEEeecCCccch-HHHHHHHHHHHhcCC
Q 005380 399 KKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINK-SEVLLKLADILQSDN 463 (699)
Q Consensus 399 ~~ll~~L~~iI~~~~p~a~V~~FGS~aTGL~lp~SDIDLvL~~~~~~i~k-~e~L~kLa~iL~s~~ 463 (699)
..+.+.|...++..-|.+++.+-|||.-|--+ ..||||+|..+...... ..++.++...|.+.+
T Consensus 180 ~~ia~~i~~~l~~~~~~~~v~i~GSyRRgket-~gDvDilit~~~~~~~~~~~ll~~vv~~L~~~~ 244 (381)
T 1jms_A 180 EAVSMLVKEAVVTFLPDALVTMTGGFRRGKMT-GHDVDFLITSPEATEDEEQQLLHKVTDFWKQQG 244 (381)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEECHHHHTTCSC-BSSEEEEEECTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCcEEEEccccccCCCC-cCCeEEEEeCCCccccchhhHHHHHHHHHHhCC
Confidence 45667777777788899999999999988766 45999999876543221 236667777776544
No 25
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=68.69 E-value=18 Score=40.93 Aligned_cols=120 Identities=15% Similarity=0.114 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHhhCCCceEEEecceecCCCCCCCCceEEEeecCCccchHHHHHHHHHHHhcCC-CcceEEeeeeeece
Q 005380 399 KKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLADILQSDN-LQNVQALTRARVPI 477 (699)
Q Consensus 399 ~~ll~~L~~iI~~~~p~a~V~~FGS~aTGL~lp~SDIDLvL~~~~~~i~k~e~L~kLa~iL~s~~-~~~V~~I~~ARVPI 477 (699)
..+.+.|.+.++..-+.+++.+-||+.-|--+ ..||||+|..+.. . .+.+.|.+.+ +..+......++-+
T Consensus 164 ~~~~~~i~~~l~~~~~~~~~~~~Gs~RRgke~-~gDiD~li~~~~~----~----~v~~~l~~~~~~~~~~~~g~~k~~~ 234 (575)
T 3b0x_A 164 LSLARSLLEAIRALPGVERAELCGSARRYKDT-VGDLDFLVASREG----E----RAVEGFVRLPQVKEVYAKGKERATV 234 (575)
T ss_dssp HHHHHHHHHHHHTSTTCCEEEECHHHHTTCSE-ESSEEEEEECSSH----H----HHHHHHHTSTTEEEEEEECSSEEEE
T ss_pred HHHHHHHHHHHHhCCCCcEEEEccccccCCCc-cCCeEEEEeCCCH----H----HHHHHHHhCcchhhHhhcCCCceEE
Confidence 45566677777777778999999999988765 4599999876542 1 2334444322 22222111222222
Q ss_pred EEEecccCCeeEEEEEecchhhhhhHHHHHHhhcChhHHHHHHHHHHHHHhcCCCCccCC
Q 005380 478 VKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQG 537 (699)
Q Consensus 478 IKf~d~~tgI~VDISfnn~~Gi~nT~LIr~y~~~dPr~r~LvllLK~Wak~rgLn~~~~G 537 (699)
++ ..|+.|||-+......-.+-+--+ -=+...+-++.||+++|+.=+..|
T Consensus 235 -~~---~~~~rvDl~~~~~~~~~~al~~~T------Gs~~~n~~lR~~A~~~g~~l~~~g 284 (575)
T 3b0x_A 235 -FL---KNGLQVDLRVVPPESYGAGLQYLT------GSAAHSIRLRALAQEKGLKLSEYG 284 (575)
T ss_dssp -EE---TTSCEEEEEEECGGGHHHHHHHHH------CCHHHHHHHHHHHHHTTCEEETTE
T ss_pred -Ec---cCCcEEEEEEECHHHHHHHHHHhh------CCHHHHHHHHHHHHHcCCCcchhh
Confidence 22 358999999986655443332211 112344678889988877543333
No 26
>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside 6-adenyltransferase, PSI-2, structural genomics; 2.65A {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
Probab=64.08 E-value=16 Score=37.84 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhhCCCce-EEEecceecCC--CCCCCCceEEEeecC
Q 005380 400 KLLTLLEKLVCKEWPDAR-LYLYGSCANSF--GVSKSDIDVCLAIND 443 (699)
Q Consensus 400 ~ll~~L~~iI~~~~p~a~-V~~FGS~aTGL--~lp~SDIDLvL~~~~ 443 (699)
.+++.|.++.+.. +.++ |.+.||.+++- .-.-||+||++++..
T Consensus 8 em~~~i~~~a~~d-~rI~Av~l~GSr~n~~~~~D~fSDyDi~~vv~d 53 (294)
T 2pbe_A 8 EMMDIFLDFALND-ERIRLVTLEGSRTNRNIPPDNFQDYDISYFVTD 53 (294)
T ss_dssp HHHHHHHHHHHHC-TTEEEEEEC------------CCCEEEEEEESC
T ss_pred HHHHHHHHHHcCC-cCEEEEEEecCCCCCCCCCCCcccceEEEEEcC
Confidence 3555666555442 3444 78899999966 677899999998854
No 27
>1jaj_A DNA polymerase beta-like protein; CIS peptide, viral protein; HET: DNA; NMR {African swine fever virus} SCOP: d.218.1.2 PDB: 1jqr_A*
Probab=63.02 E-value=9.1 Score=37.07 Aligned_cols=117 Identities=11% Similarity=0.060 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHhh-------CCCceEEEecceecCCCCCCCCceEEEeecCCccchHHHHHHHHHHHhc--CC-Cc-ceE
Q 005380 400 KLLTLLEKLVCKE-------WPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLADILQS--DN-LQ-NVQ 468 (699)
Q Consensus 400 ~ll~~L~~iI~~~-------~p~a~V~~FGS~aTGL~lp~SDIDLvL~~~~~~i~k~e~L~kLa~iL~s--~~-~~-~V~ 468 (699)
+++++|+.-+.-. +|++++.+-||+.-|..+- .|||++|..+.. ..+.+.|.+ .+ +. .+.
T Consensus 9 ~~~~~l~~~~~~~~~~~~ik~~g~~v~iaGS~RRgket~-gDiDiLit~~~~--------~~v~~~L~~~~~~~v~~~~l 79 (174)
T 1jaj_A 9 KIVNHLRSRLAFEYNGQLIKILSKNIVAVGSLRREEKML-NDVDLLIIVPEK--------KLLKHVLPNIRIKGLSFSVK 79 (174)
T ss_dssp HHHHHHHHSEEEEETTEEEEECTTTEEEEEHHHHTCSEE-CCEEEEEEESSH--------HHHHTSSSEEEESSCEEEEE
T ss_pred HHHHHHHhhhhHHhhcccccCCCcEEEEeccccCCCCCC-CCEEEEEecCCH--------HHHHHHHHhccCCceeHhHe
Confidence 4555555544322 4688999999999887664 499999987541 133334444 32 22 222
Q ss_pred EeeeeeeceEEEecccCCeeEEEEEecchhhhhhHHHHHHhhcChhHHHHHHHHHHHHHhcCCC
Q 005380 469 ALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVN 532 (699)
Q Consensus 469 ~I~~ARVPIIKf~d~~tgI~VDISfnn~~Gi~nT~LIr~y~~~dPr~r~LvllLK~Wak~rgLn 532 (699)
.....++=+ ++.....++.|||-+........+-+--+=. +....-++.||+++|+.
T Consensus 80 ~~g~~k~~~-~l~~~~~~~rVDl~~vp~~~fg~ALl~fTGS------k~hn~~lR~~A~~kG~~ 136 (174)
T 1jaj_A 80 VCGERKCVL-FIEWEKKTYQLDLFTALAEEKPYAIFHFTGP------VSYLIRIRAALKKKNYK 136 (174)
T ss_dssp EETTTEEEE-EEESSSCCEEEEEEEEETTCHHHHHHHHHSC------HHHHHHHHHHHHHTTEE
T ss_pred ecCCCeEEE-EeCCCCCceEEEEEEeCHHHHHHHHHHhHCC------HHHHHHHHHHHHHcCCC
Confidence 111222211 2321126899999998665544443322211 23346678888887764
No 28
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=54.29 E-value=42 Score=32.04 Aligned_cols=55 Identities=18% Similarity=0.137 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhhC-CCceEEEecceec---CCCCCCCCceEEEeecCCccchHHHHHHHHHHHhcCC
Q 005380 401 LLTLLEKLVCKEW-PDARLYLYGSCAN---SFGVSKSDIDVCLAINDSEINKSEVLLKLADILQSDN 463 (699)
Q Consensus 401 ll~~L~~iI~~~~-p~a~V~~FGS~aT---GL~lp~SDIDLvL~~~~~~i~k~e~L~kLa~iL~s~~ 463 (699)
+...|+.++...- -++...+.||++. |.-.+.-||||.+.. +-..++.++|...+
T Consensus 18 ~~~~L~~i~~~L~~~~V~~~l~Gs~Al~~~G~~~~~~DIDi~i~~--------~da~~~~~~L~~~g 76 (169)
T 2fcl_A 18 YLRVLRXIYDRLXNEXVNWVVTGSLSFALQGVPVEVHDIDIQTDE--------EGAYEIERIFSEFV 76 (169)
T ss_dssp HHHHHHHHHHHHTTSSCCEEEEHHHHHHHTTCCCCCCSEEEEECH--------HHHHHHHHHTGGGE
T ss_pred HHHHHHHHHHHHHhcCCCEEEeHHHHHHHcCCCCCCCccEEEecc--------cCHHHHHHHHHHHh
Confidence 3333444433332 2688899999974 777778899998832 34456677776543
No 29
>1v4a_A Glutamate-ammonia-ligase adenylyltransferase; main alpha helix, DNA polymerase beta motif; 2.00A {Escherichia coli} SCOP: a.24.16.4 d.218.1.9
Probab=35.87 E-value=56 Score=35.73 Aligned_cols=44 Identities=18% Similarity=0.230 Sum_probs=32.5
Q ss_pred ceEEEecceecCCCCCCCCceEEEeecCC--------ccchHHHHHHHHHHH
Q 005380 416 ARLYLYGSCANSFGVSKSDIDVCLAINDS--------EINKSEVLLKLADIL 459 (699)
Q Consensus 416 a~V~~FGS~aTGL~lp~SDIDLvL~~~~~--------~i~k~e~L~kLa~iL 459 (699)
.-|..+||+.-+=-.+.||||++++.+.. .+...+++.++++.+
T Consensus 155 ~aviamGk~Gr~EL~~~SDiDli~l~~~~~~~~~~~~~~~~~~~f~rla~~l 206 (440)
T 1v4a_A 155 LLILGMGKLGGGELNFSSDIDLIFAWPEHGCTQGGRRELDNAQFFTRMGQRL 206 (440)
T ss_dssp CEEEECHHHHTTCCCSSCCEEEEEEECC--------CCSCHHHHHHHHHHHH
T ss_pred EEEEEeccccccCcCCCCCcceEEEeCCCCCCcccccchhHHHHHHHHHHHH
Confidence 67889999999999999999999887632 123445666666544
No 30
>2nrk_A Hypothetical protein GRPB; UPF0157, PFAM04229, glutamate-rich protein, enterococcus FAE PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis} SCOP: d.218.1.14
Probab=31.58 E-value=2.2e+02 Score=27.06 Aligned_cols=119 Identities=11% Similarity=0.036 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHhhCCCceEEEecceec-CCCCCCCCceEEEeecCCccchHHHHHHHHHHHhcCCCcceEEeeeeeec-e
Q 005380 400 KLLTLLEKLVCKEWPDARLYLYGSCAN-SFGVSKSDIDVCLAINDSEINKSEVLLKLADILQSDNLQNVQALTRARVP-I 477 (699)
Q Consensus 400 ~ll~~L~~iI~~~~p~a~V~~FGS~aT-GL~lp~SDIDLvL~~~~~~i~k~e~L~kLa~iL~s~~~~~V~~I~~ARVP-I 477 (699)
+...+|+.++... -++|.=+||++- |+.- .-.|||.|.+..... +..+...|...|+...- ..-+| -
T Consensus 21 ~e~~~l~~~l~~~--~~~I~HIGSTsVpGl~A-KPIIDI~v~V~~~~~-----~~~~~~~L~~~Gy~~~~---e~~~~~r 89 (173)
T 2nrk_A 21 EEAQALKQILKEN--CLKVEHIGSTSVPNLAA-KPIIDFLVIVEEIEK-----VDLLQWEFERIGYEYMG---EFGLSGR 89 (173)
T ss_dssp HHHHHHHHHHGGG--EEEEEEESGGGSTTCCB-CSCEEEEEEESCSGG-----GGGGHHHHHHTTCEECT---TTTSTTE
T ss_pred HHHHHHHHhcCCc--cceEEEECCCCCCCCCc-CCeeEEEeccCCHHH-----HHHHHHHHHHCCCEECC---CCCCCcc
Confidence 3344455544332 278999999984 4443 347777776654221 11233344444432110 00011 0
Q ss_pred EEEe--cccCCeeEEEEEecc-hhhhhhHHHHHHhhcChhHHHHHHHHHHHHHhc
Q 005380 478 VKLM--DPVTGISCDICINNL-LAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSR 529 (699)
Q Consensus 478 IKf~--d~~tgI~VDISfnn~-~Gi~nT~LIr~y~~~dPr~r~LvllLK~Wak~r 529 (699)
.-|. +...-..+-|+.... ..+..--+++.|+..+|..+.-.--+|.=+...
T Consensus 90 ~~f~k~~~~r~~hlHv~~~g~~~~~~~~L~FRDyLr~~p~~~~~Y~~lK~~la~~ 144 (173)
T 2nrk_A 90 RYLRKGPIKRTHHVHIYQFDNTQEILRHLAFRNYLRENPAIATTYGTLKKQLAQA 144 (173)
T ss_dssp EEEEECSSSCCEEEEEEETTCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCceEEEEEEecCChHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHh
Confidence 1111 111234555555544 566777889999999999999999999877655
No 31
>3k7d_A Glutamate-ammonia-ligase adenylyltransferase; nucleotidyl transferase domain, ATP-binding, nucleotide-BIND nucleotidyltransferase; 2.40A {Escherichia coli}
Probab=27.73 E-value=97 Score=34.57 Aligned_cols=44 Identities=20% Similarity=0.175 Sum_probs=32.1
Q ss_pred ceEEEecceecCCCCCCCCceEEEeecCCc---------cchHHHHHHHHHHH
Q 005380 416 ARLYLYGSCANSFGVSKSDIDVCLAINDSE---------INKSEVLLKLADIL 459 (699)
Q Consensus 416 a~V~~FGS~aTGL~lp~SDIDLvL~~~~~~---------i~k~e~L~kLa~iL 459 (699)
.-|..+|++.-+=-...||||++++.+... +...+++.++++.+
T Consensus 235 ~aviamGklGg~EL~~~SDiDlifv~~~~~~~~t~g~~~~~~~~~f~rlaq~l 287 (498)
T 3k7d_A 235 FAVVGYGKLGGWELGYSSDLDLIFLHDCPMDAMTDGEREIDGRQFYLRLAQRI 287 (498)
T ss_dssp EEEEEEHHHHTTCCCTTCCEEEEEEECCCTTCBBSSSSCCBHHHHHHHHHHHH
T ss_pred EEEEeeccccccccCcccccceeeeecCcccccccccccchHHHHHHHHHHHH
Confidence 568899999999999999999999886431 23345666655433
Done!